PeakID (cmd=annotatePeaks.pl DBA_MYC2DB_diffbind_reportLvC2_contrast_all.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
12.2915-7	chr2	219858502	219859001	+	0	NA	promoter-TSS (NM_057094)	promoter-TSS (NM_057094)	-624	NM_057093	1412	Hs.415790	NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
0.510982-24	chr6	6007756	6008255	+	0	NA	promoter-TSS (NM_016588)	promoter-TSS (NM_016588)	-167	NM_001278710	51299	Hs.103291	NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
1.22053-29	chr7	139931386	139931885	+	0	NA	Intergenic	MIRc|SINE|MIR	54574	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
0.15923-23	chr22	19650884	19651383	+	0	NA	Intergenic	Intergenic	-50854	NM_002688	5413	Hs.728762	NM_002688	ENSG00000184702	SEPT5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1	septin 5	protein-coding
0.163737-7	chr11	48131347	48131846	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	13262	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
2.95849-10	chr15	72668163	72668662	+	0	NA	promoter-TSS (NR_027262)	promoter-TSS (NR_027262)	-42	NR_027262	80072	Hs.591113	NM_025005	ENSG00000260339	HEXA-AS1	C15orf34	HEXA antisense RNA 1	ncRNA
19.9568-6	chr3	128036510	128037009	+	0	NA	intron (NM_021937, intron 4 of 6)	L2b|LINE|L2	-145678	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
0.145735-9	chr14	32670656	32671155	+	0	NA	promoter-TSS (NR_125730).3	promoter-TSS (NR_125730).3	-346	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
25.544	chr16	47921432	47921931	+	0	NA	promoter-TSS (NR_110649)	promoter-TSS (NR_110649)	-640	NR_110649	100507534	Hs.407601	NR_110649	ENSG00000261325	LOC100507534	-	uncharacterized LOC100507534	ncRNA
9.62574-20	chr20	47264977	47265476	+	0	NA	intron (NM_020820, intron 25 of 39)	L1MC5|LINE|L1	179194	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
0.414361-27	chr6	133561784	133562730	+	0	NA	promoter-TSS (NM_172105)	promoter-TSS (NM_172105)	-238	NM_172103	2070	Hs.596680	NM_004100	ENSG00000112319	EYA4	CMD1J|DFNA10	EYA transcriptional coactivator and phosphatase 4	protein-coding
16.9037-4	chr16	27700849	27701348	+	0	NA	intron (NM_015202, intron 8 of 27)	MLT1H2|LTR|ERVL-MaLR	139630	NM_015202	23247	Hs.460459	NM_015202	ENSG00000047578	KIAA0556	JBTS26	KIAA0556	protein-coding
29.6257-2	chr8	37698797	37699296	+	0	NA	exon (NM_032777, exon 19 of 19)	exon (NM_032777, exon 19 of 19)	8385	NM_018310	55290	Hs.709301	NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor subunit	protein-coding
7.01147-21	chr3	131748638	131749137	+	0	NA	intron (NM_001289112, intron 1 of 15)	intron (NM_001289112, intron 1 of 15)	5399	NM_130808	131034	Hs.199877	NM_130808	ENSG00000196353	CPNE4	COPN4|CPN4	copine 4	protein-coding
3.22393-18	chr19	18744033	18744532	+	0	NA	Intergenic	Intergenic	-3493	NM_001345984	55295	Hs.250632	NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
7.90485-3	chr2	170711807	170712306	+	0	NA	intron (NM_172070, intron 1 of 38)	SVA_B|Other|Other	28038	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
24.9485-2	chr7	8383125	8383624	+	0	NA	TTS (NR_125740)	TTS (NR_125740)	-81132	NM_004968	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
8.86057-13	chr4	155081902	155082401	+	0	NA	Intergenic	Intergenic	230298	NM_017639	54798	Hs.655664	NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
10.8725-4	chr4	55523255	55524506	+	0	NA	promoter-TSS (NM_000222)	promoter-TSS (NM_000222)	-215	NM_001093772	3815	Hs.479754	NM_000222	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	KIT proto-oncogene receptor tyrosine kinase	protein-coding
1.4691-14	chr14	69515142	69515641	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	68992	NR_073422	161159	Hs.603341	NR_073422	ENSG00000259062	ACTN1-AS1	C14orf84	ACTN1 antisense RNA 1	ncRNA
2.08309-7	chrX	44318689	44319188	+	0	NA	Intergenic	Intergenic	83283	NM_173794	139341	Hs.7549	NM_173794	ENSG00000069509	FUNDC1	-	FUN14 domain containing 1	protein-coding
2.29148	chr2	85153926	85154425	+	0	NA	Intergenic	Intergenic	21412	NM_021103	9168	Hs.446574	NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
0.310503-26	chr8	6631383	6631882	+	0	NA	Intergenic	Intergenic	-28871	NR_039807	100616372		NR_039807	ENSG00000283386	MIR4659B	-	microRNA 4659b	ncRNA
9.1364-29	chr8	68282282	68282781	+	0	NA	intron (NR_136223, intron 2 of 2)	MER67B|LTR|ERV1	26462	NR_136223	102724708	Hs.636330	NR_136223		LOC102724708	-	uncharacterized LOC102724708	ncRNA
14.5842-6	chr4	36114994	36115493	+	0	NA	intron (NM_015230, intron 26 of 32)	intron (NM_015230, intron 26 of 32)	-130495	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
1.02373-6	chr19	58609411	58609910	+	0	NA	promoter-TSS (NM_001145543)	promoter-TSS (NM_001145543)	70	NM_023926	65982	Hs.235390	NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
0.00434512-35	chr2	121153535	121154034	+	0	NA	Intergenic	Intergenic	50066	NM_002193	3625	Hs.1735	NM_002193	ENSG00000163083	INHBB	-	inhibin beta B subunit	protein-coding
0.15923-29	chr12	130966956	130967455	+	0	NA	intron (NM_015347, intron 2 of 18)	L2a|LINE|L2	35205	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
7.56962-18	chr1	36794246	36794745	+	0	NA	Intergenic	MIRb|SINE|MIR	-4740	NM_018166	55194	Hs.87016	NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
0.428718-21	chr20	23762956	23763455	+	0	NA	Intergenic	Intergenic	-31631	NM_001898	1469	Hs.123114	NM_001898	ENSG00000170373	CST1	-	cystatin SN	protein-coding
0.0305075-64	chrX	154254973	154255472	+	0	NA	exon (NM_023934, exon 1 of 5)	exon (NM_023934, exon 1 of 5)	158	NM_023934	65991	Hs.356050	NM_023934	ENSG00000165775	FUNDC2	DC44|HCBP6|HCC3|PD03104	FUN14 domain containing 2	protein-coding
3.01899-17	chr10	102107458	102107957	+	0	NA	intron (NM_005063, intron 1 of 5)	CpG	935	NM_005063	6319	Hs.558396	NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
12.1325-3	chr22	44568577	44569076	+	0	NA	promoter-TSS (NM_001137605)	promoter-TSS (NM_001137605)	-10	NM_001137605	64098	Hs.658995	NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
1.10138-8	chr19	4607035	4607534	+	0	NA	Intergenic	CpG	-32243	NM_152362	126282	Hs.465643	NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
2.79014	chr3	111804937	111805436	+	0	NA	promoter-TSS (NM_024616)	promoter-TSS (NM_024616)	4	NM_001171747	79669	Hs.434247	NM_024616	ENSG00000114529	C3orf52	TTMP	chromosome 3 open reading frame 52	protein-coding
12.5181-2	chr19	1977009	1977508	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-22710	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
0.419142-9	chr12	48394718	48395217	+	0	NA	intron (NM_001844, intron 1 of 53)	intron (NM_001844, intron 1 of 53)	3318	NM_001844	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
0.209071-7	chr2	114384215	114384714	+	0	NA	promoter-TSS (NM_013412)	promoter-TSS (NM_013412)	251	NR_024529	118433	Hs.595056	NR_000029		RPL23AP7	RPL23AL1|RPL23A_6_267|bA395L14.9	ribosomal protein L23a pseudogene 7	pseudo
9.24453-23	chr1	42119131	42119630	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-169026	NM_001302269	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
1.98596-5	chr2	75874021	75874520	+	0	NA	exon (NM_014763, exon 2 of 6)	exon (NM_014763, exon 2 of 6)	361	NM_014763	9801	Hs.44024	NM_014763	ENSG00000115364	MRPL19	L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15	mitochondrial ribosomal protein L19	protein-coding
0.899095-16	chrX	128369648	128370147	+	0	NA	Intergenic	Intergenic	287585	NM_001282875	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
2.11832-3	chr21	46066752	46067251	+	0	NA	exon (NM_198692, exon 1 of 1)	exon (NM_198692, exon 1 of 1)	670	NM_198692	386678	Hs.58076	NM_198692	ENSG00000243489	KRTAP10-11	KAP10.11|KAP18.11|KRTAP18-11|KRTAP18.11	keratin associated protein 10-11	protein-coding
16.4589-2	chr4	35134524	35135023	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1093258	NR_125902	101928622	Hs.631687	NR_125902	ENSG00000250954	LOC101928622	-	uncharacterized LOC101928622	ncRNA
12.4185	chr3	138465952	138466451	+	0	NA	intron (NM_006219, intron 2 of 21)	Tigger2b_Pri|DNA|TcMar-Tigger	12000	NM_006219	5291	Hs.239818	NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
2.62013-6	chr12	7261646	7262145	+	0	NA	promoter-TSS (NM_001297640)	promoter-TSS (NM_001297640)	-21	NM_001297643	51279	Hs.631730	NM_016546	ENSG00000139178	C1RL	C1RL1|C1RLP|C1r-LP|CLSPa	complement C1r subcomponent like	protein-coding
0.798767-19	chr17	76209992	76210491	+	0	NA	promoter-TSS (NM_001168)	promoter-TSS (NM_001168)	-36	NM_001012270	332	Hs.744872	NM_001168	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
0.846002-7	chr5	18807535	18808034	+	0	NA	Intergenic	LTR43|LTR|ERV1	1000401	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
3.90406-11	chr2	83017381	83017880	+	0	NA	Intergenic	LTR1D|LTR|ERV1	-66297	NR_033423	1720	Hs.169235	NR_033423		DHFRP3	-	dihydrofolate reductase pseudogene 3	pseudo
0.301184-26	chr7	97680351	97680850	+	0	NA	Intergenic	Intergenic	-55597	NM_014916	22853	Hs.444179	NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
2.9073-2	chr8	126443294	126444058	+	0	NA	promoter-TSS (NM_001282985)	promoter-TSS (NM_001282985)	-775	NM_001282985	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
0.352691-15	chr1	188611725	188612224	+	0	NA	Intergenic	MER50C|LTR|ERV1	1199214	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
15.7675-16	chr2	179773465	179773964	+	0	NA	intron (NM_173648, intron 7 of 23)	intron (NM_173648, intron 7 of 23)	-101564	NM_001267550	7273	Hs.134602	NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD	titin	protein-coding
1.81774-8	chr1	876432	876931	+	0	NA	exon (NM_152486, exon 8 of 14)	exon (NM_152486, exon 8 of 14)	15560	NM_152486	148398	Hs.335293	NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
5.85027-7	chr2	65140313	65140812	+	0	NA	intron (NR_036586, intron 1 of 2)	intron (NR_036586, intron 1 of 2)	19019	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	ncRNA
11.7393-3	chr9	27665086	27665585	+	0	NA	Intergenic	LTR9|LTR|ERV1	-91471	NM_145005	203228	Hs.493639	NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENNL72|FTDALS|FTDALS1	chromosome 9 open reading frame 72	protein-coding
0.390538-12	chr9	84002486	84002985	+	0	NA	Intergenic	Intergenic	301715	NM_005077	7088	Hs.197320	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	transducin like enhancer of split 1	protein-coding
6.47817-6	chr8	103819567	103820066	+	0	NA	Intergenic	Intergenic	56612	NM_001301668	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	AZI|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
15.6703-4	chr19	18701283	18701782	+	0	NA	intron (NM_001100419, intron 3 of 4)	intron (NM_001100419, intron 3 of 4)	2037	NM_001100419	55049	Hs.655317	NM_017967	ENSG00000006015	C19orf60	-	chromosome 19 open reading frame 60	protein-coding
9.87163-9	chr15	57425413	57425912	+	0	NA	intron (NM_001322156, intron 6 of 21)	intron (NM_001322156, intron 6 of 21)	-85966	NM_001306219	6938	Hs.511504	NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20	transcription factor 12	protein-coding
6.96804-6	chr5	1512684	1513183	+	0	NA	intron (NM_024830, intron 1 of 13)	L2b|LINE|L2	-1962	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
3.78824-2	chr9	135124434	135124933	+	0	NA	Intergenic	Intergenic	87349	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
0.589858-15	chr3	50329674	50330173	+	0	NA	TTS (NM_003549)	TTS (NM_003549)	103	NM_006764	7866	Hs.315177	NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
59.2082-2	chr8	128926432	128926931	+	0	NA	intron (NR_003367, intron 2 of 8)	L1MB5|LINE|L1	34288	NR_103558	641384	Hs.629674	NM_001037234	ENSG00000280055	TMEM75	-	transmembrane protein 75	ncRNA
1.87755	chr3	64474915	64475414	+	0	NA	Intergenic	Intergenic	-71858	NR_110151	101929335	Hs.476604	NR_110150	ENSG00000241158	ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
7.35182-9	chr18	54536299	54536798	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	202802	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
11.5677	chr10	17925619	17926118	+	0	NA	intron (NM_002438, intron 4 of 29)	intron (NM_002438, intron 4 of 29)	38761	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
8.50781-3	chr8	67551171	67551670	+	0	NA	intron (NM_025054, intron 2 of 2)	AluJb|SINE|Alu	-25936	NM_001080416	4603	Hs.445898	NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
0.0921731-31	chr17	43099142	43099641	+	0	NA	Intergenic	CpG	29494	NM_001288655	79877	Hs.463148	NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
0.0568285-12	chr2	192555628	192556127	+	0	NA	intron (NR_131917, intron 1 of 2)	intron (NR_131917, intron 1 of 2)	970	NR_131917	105747689	Hs.104972	NR_131917		LOC105747689	-	uncharacterized LOC105747689	ncRNA
0.624821-4	chr1	71546122	71546621	+	0	NA	promoter-TSS (NR_046217)	promoter-TSS (NR_046217)	601	NM_005455	9406	Hs.194718	NM_005455	ENSG00000132485	ZRANB2	ZIS|ZIS1|ZIS2|ZNF265	zinc finger RANBP2-type containing 2	protein-coding
13.1426-3	chr1	235022731	235023230	+	0	NA	Intergenic	Intergenic	76766	NR_125945	101927851	Hs.520684	NR_125945	ENSG00000238005	LOC101927851	-	uncharacterized LOC101927851	ncRNA
0.15923-25	chr19	51339079	51339578	+	0	NA	intron (NR_131203, intron 2 of 2)	CpG	-4549	NM_001277081	55554	Hs.567535	NM_017509	ENSG00000174562	KLK15	ACO|HSRNASPH	kallikrein related peptidase 15	protein-coding
0.783135-29	chr20	34042484	34042983	+	0	NA	promoter-TSS (NR_031620)	promoter-TSS (NR_031620)	-165	NM_001319138	8200	Hs.1573	NM_000557	ENSG00000125965	GDF5	BDA1C|BMP-14|BMP14|CDMP1|LAP-4|LAP4|OS5|SYM1B|SYNS2	growth differentiation factor 5	protein-coding
0.245682-15	chr17	62493309	62493808	+	0	NA	promoter-TSS (NM_007215)	promoter-TSS (NM_007215)	-374	NM_007215	11232	Hs.437009	NM_007215	ENSG00000256525	POLG2	HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
3.77786-11	chr4	185088747	185089246	+	0	NA	intron (NM_153343, intron 1 of 7)	intron (NM_153343, intron 1 of 7)	50118	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
14.6597-3	chr20	30300291	30300790	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-8770	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
0.899095-11	chr3	195681225	195681724	+	0	NA	Intergenic	CpG	35676	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex flavoprotein subunit A pseudogene 1	pseudo
0.371573-22	chr19	35611359	35611858	+	0	NA	intron (NM_001136009, intron 4 of 5)	MER113|DNA|hAT-Charlie	-1996	NR_106947	102466205		NR_106947	ENSG00000089356	MIR6887	hsa-mir-6887	microRNA 6887	ncRNA
29.6257-3	chr5	112567897	112568749	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	62289	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
3.30683-13	chrX	142747265	142747764	+	0	NA	Intergenic	Intergenic	-23588	NM_001184749	139065	Hs.272284	NM_173078	ENSG00000179542	SLITRK4	-	SLIT and NTRK like family member 4	protein-coding
0.644927-5	chr6	103775081	103775580	+	0	NA	Intergenic	Intergenic	1532091	NM_001321083	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
1.01824-4	chr12	27167589	27168088	+	0	NA	promoter-TSS (NM_016551)	promoter-TSS (NM_016551)	-499	NM_016551	51768	Hs.438641	NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
2.64401	chr18	22745103	22745602	+	0	NA	intron (NM_015461, intron 5 of 7)	intron (NM_015461, intron 5 of 7)	186862	NM_001308225	25925	Hs.116935	NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding
2.52588-9	chr22	50657732	50658231	+	0	NA	intron (NM_020461, intron 18 of 24)	intron (NM_020461, intron 18 of 24)	18573	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
0.0261362-51	chr21	47240411	47240910	+	0	NA	Intergenic	Intergenic	15673	NR_038876	100129027	Hs.689591	NR_038876	ENSG00000205424	LOC100129027	-	uncharacterized LOC100129027	ncRNA
13.0892-4	chr1	165254545	165255044	+	0	NA	intron (NM_177398, intron 3 of 8)	intron (NM_177398, intron 3 of 8)	70684	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
1.33713-9	chr14	37130341	37130840	+	0	NA	intron (NM_006194, intron 1 of 4)	intron (NM_006194, intron 1 of 4)	3817	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
0.550241-20	chr6	167596304	167596803	+	0	NA	TTS (NM_001145121)	TTS (NM_001145121)	12472	NM_001145121	401285	Hs.691976	NM_001013683	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
2.93282-2	chr15	70393679	70394178	+	0	NA	Intergenic	Intergenic	-3672	NM_001282980	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
12.993-3	chr3	34688491	34688990	+	0	NA	Intergenic	AluJr|SINE|Alu	746775	NR_110817	101928135	Hs.550715	NR_110817		LOC101928135	-	uncharacterized LOC101928135	ncRNA
1.79799-14	chr16	31105794	31106293	+	0	NA	exon (NM_024006, exon 1 of 3)	exon (NM_024006, exon 1 of 3)	277	NM_024006	79001	Hs.324844	NM_024006	ENSG00000167397	VKORC1	EDTP308|MST134|MST576|VKCFD2|VKOR	vitamin K epoxide reductase complex subunit 1	protein-coding
9.62574-27	chr2	57687906	57688405	+	0	NA	Intergenic	L2a|LINE|L2	-446631	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
3.18759-18	chr19	36184625	36185124	+	0	NA	Intergenic	LTR41|LTR|ERVL	-10515	NM_001316903	27033	Hs.99430	NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538	zinc finger and BTB domain containing 32	protein-coding
2.58848-15	chr6	126589191	126589690	+	0	NA	Intergenic	Intergenic	-71495	NM_001286525	387103	Hs.486401	NM_001012507	ENSG00000203760	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
6.16185-7	chr17	55391269	55391768	+	0	NA	intron (NM_170721, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	57144	NM_170721	124540	Hs.658922	NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
1.20904-3	chr9	37464886	37465385	+	0	NA	intron (NM_014872, intron 1 of 1)	CpG	272	NM_014872	9925	Hs.161276	NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
1.81115-14	chr20	44680515	44681014	+	0	NA	intron (NM_020708, intron 18 of 25)	MIRb|SINE|MIR	22943	NM_020708	57468	Hs.21413	NM_020708	ENSG00000124140	SLC12A5	EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
0.15923-37	chr14	23835244	23835743	+	0	NA	promoter-TSS (NM_001277174)	promoter-TSS (NM_001277174)	-651	NM_005864	10278	Hs.24587	NM_005864	ENSG00000100842	EFS	CAS3|CASS3|EFS1|EFS2|HEFS|SIN	embryonal Fyn-associated substrate	protein-coding
0.609802-19	chr15	55818588	55819087	+	0	NA	Intergenic	L1PA15|LINE|L1	-18405	NM_130810	161582	Hs.126403	NM_130810	ENSG00000256061	DYX1C1	CILD25|DNAAF4|DYX1|DYXC1|EKN1|RD	dyslexia susceptibility 1 candidate 1	protein-coding
1.70053-8	chrX	69343275	69343774	+	0	NA	Intergenic	SVA_B|Other|Other	-9794	NM_001551	3476	Hs.496267	NM_001551	ENSG00000089289	IGBP1	ALPHA-4|IBP1	immunoglobulin (CD79A) binding protein 1	protein-coding
19.6658-2	chr16	79100329	79100828	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	534044	NM_001031804	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
1.59267-11	chr8	6419323	6419822	+	0	NA	intron (NM_001118887, intron 1 of 8)	intron (NM_001118887, intron 1 of 8)	1212	NM_001118888	285	Hs.583870	NM_001147	ENSG00000091879	ANGPT2	AGPT2|ANG2	angiopoietin 2	protein-coding
0.352691-14	chr10	98883387	98883886	+	0	NA	intron (NM_003061, intron 4 of 36)	intron (NM_003061, intron 4 of 36)	21123	NR_038330	100505540	Hs.568878	NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
0.0217692-13	chr15	83968189	83968688	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-14970	NM_001717	646	Hs.459153	NM_001717	ENSG00000169594	BNC1	BNC|BSN1|HsT19447	basonuclin 1	protein-coding
5.01689-6	chr6	151212937	151213436	+	0	NA	intron (NM_015440, intron 7 of 27)	intron (NM_015440, intron 7 of 27)	25717	NM_001242768	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
6.49752-6	chr15	75992340	75992839	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	12600	NM_001897	1464	Hs.513044	NM_001897	ENSG00000173546	CSPG4	HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
10.6601	chr10	29935212	29935711	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-11560	NM_021738	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
1.2436-22	chr5	180287410	180287909	+	0	NA	intron (NM_152283, intron 1 of 2)	intron (NM_152283, intron 1 of 2)	627	NM_001172638	643836	Hs.509227	NM_152283	ENSG00000196670	ZFP62	ZET|ZNF755	ZFP62 zinc finger protein	protein-coding
6.25252-6	chr2	91846260	91846759	+	0	NA	intron (NR_027238, intron 1 of 3)	intron (NR_027238, intron 1 of 3)	1466	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
4.31798-19	chr1	173836561	173837490	+	0	NA	promoter-TSS (NR_003941)	promoter-TSS (NR_003941)	100	NR_002578	60674	Hs.531856	NR_002578	ENSG00000234741	GAS5	NCRNA00030|SNHG2	growth arrest specific 5 (non-protein coding)	ncRNA
13.8722	chr17	78587278	78587777	+	0	NA	intron (NM_001163034, intron 1 of 29)	intron (NM_001163034, intron 1 of 29)	68902	NM_020761	57521	Hs.133044	NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
18.3863-12	chr2	172917370	172917869	+	0	NA	intron (NM_001322279, intron 1 of 9)	intron (NM_001322279, intron 1 of 9)	-32589	NM_178120	1745	Hs.407015	NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
0.222764-21	chr1	117452819	117453318	+	0	NA	intron (NM_020440, intron 1 of 8)	CpG	523	NM_020440	5738	Hs.418093	NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
2.24754-11	chr16	84346571	84347070	+	0	NA	intron (NM_021197, intron 2 of 6)	CpG-9571	18508	NM_021197	58189	Hs.36688	NM_021197	ENSG00000103175	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
1.34896-10	chr11	47663939	47664438	+	0	NA	promoter-TSS (NM_001317231)	promoter-TSS (NM_001317231)	18	NM_001317232	23788	Hs.269944	NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
0.443122-7	chr1	246958484	246958983	+	0	NA	Intergenic	Intergenic	5814	NR_015422	149134	Hs.720494	NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
0.199966-8	chr3	140224026	140224525	+	0	NA	TTS (NR_108084)	TTS (NR_108084)	3356	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
3.50665-8	chr22	43420943	43421442	+	0	NA	Intergenic	Intergenic	-10008	NM_001184970	11252	Hs.162877	NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
1.27844-17	chr2	235877015	235877514	+	0	NA	intron (NM_014521, intron 1 of 5)	L1M5|LINE|L1	16636	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
1.02923-19	chr15	99240420	99240919	+	0	NA	intron (NM_000875, intron 1 of 20)	intron (NM_000875, intron 1 of 20)	-46219	NR_126453	104472848	Hs.349049	NR_126453		IRAIN	IGF1R-AS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
13.0103-4	chr17	25821156	25821655	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	22369	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
7.52027-5	chr4	24474378	24474877	+	0	NA	promoter-TSS (NM_001330751)	promoter-TSS (NM_001330751)	-175	NM_001330751	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
11.3253	chr3	171822169	171822668	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	64074	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
9.66576-16	chr4	1941717	1942216	+	0	NA	3' UTR (NM_007331, exon 11 of 11)	3' UTR (NM_007331, exon 11 of 11)	-34397	NR_003004	677770	Hs.676951	NR_003004	ENSG00000249784	SCARNA22	ACA11	small Cajal body-specific RNA 22	ncRNA
0.867161-4	chr7	107103499	107103998	+	0	NA	intron (NM_181733, intron 6 of 20)	intron (NM_181733, intron 6 of 20)	-6754	NM_005295	2845	Hs.657277	NM_005295	ENSG00000172209	GPR22	-	G protein-coupled receptor 22	protein-coding
0.0612309-3	chr22	19705468	19705967	+	0	NA	promoter-TSS (NR_037612)	promoter-TSS (NR_037612)	-241	NM_001009939	5413	Hs.728762	NM_002688	ENSG00000184702	SEPT5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1	septin 5	protein-coding
0.824945-7	chr7	73251149	73251648	+	0	NA	intron (NM_152559, intron 5 of 5)	SVA_F|Other|Other	5457	NM_152559	155368	Hs.647042	NM_152559	ENSG00000165171	WBSCR27	-	Williams Beuren syndrome chromosome region 27	protein-coding
21.3847	chr21	27864482	27864981	+	0	NA	intron (NM_052954, intron 2 of 3)	intron (NM_052954, intron 2 of 3)	80992	NM_001320768	116159	Hs.37445	NM_052954	ENSG00000166265	CYYR1	C21orf95	cysteine and tyrosine rich 1	protein-coding
9.66576-6	chr1	229478452	229478951	+	0	NA	promoter-TSS (NM_145257)	promoter-TSS (NM_145257)	-13	NM_145257	126731	Hs.585011	NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
2.16811-12	chr8	38501120	38501619	+	0	NA	Intergenic	AluJb|SINE|Alu	-42594	NR_003129	286140	Hs.512071	NR_003129		RNF5P1	-	ring finger protein 5 pseudogene 1	pseudo
0.675262-6	chr3	139166879	139167378	+	0	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	28224	NM_004164	5948	Hs.655516	NM_004164	ENSG00000114113	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2	protein-coding
6.53647-3	chr7	128330017	128330516	+	0	NA	Intergenic	SVA_C|Other|Other	17928	NM_001290254	346653	Hs.445236	NM_001012454	ENSG00000205085	FAM71F2	FAM137B	family with sequence similarity 71 member F2	protein-coding
6.73664-13	chr22	31573387	31573886	+	0	NA	intron (NR_024212, intron 1 of 5)	intron (NR_024212, intron 1 of 5)	17498	NM_001135825	91445	Hs.517553	NM_152267	ENSG00000138942	RNF185	-	ring finger protein 185	protein-coding
0.0261362-17	chr5	14744023	14744522	+	0	NA	intron (NM_054027, intron 7 of 11)	intron (NM_054027, intron 7 of 11)	31469	NR_046285	100130744	Hs.660550	NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
0.0656377-3	chr3	9130560	9131059	+	0	NA	intron (NM_001033117, intron 3 of 21)	L2b|LINE|L2	-103368	NR_121664	101927416	Hs.475364	NR_121663	ENSG00000228723	SRGAP3-AS2	-	SRGAP3 antisense RNA 2	ncRNA
0.0656377-4	chr21	36261017	36261516	+	0	NA	promoter-TSS (NM_001122607)	promoter-TSS (NM_001122607)	-279	NM_001122607	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
1.34896-7	chr12	1100020	1100519	+	0	NA	promoter-TSS (NR_027949)	promoter-TSS (NR_027949)	-105	NR_027948	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
2.79014-20	chr1	151168703	151169202	+	0	NA	Intergenic	Intergenic	-2068	NM_001330689	8394	Hs.655131	NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
2.19683-3	chr9	74061677	74062176	+	0	NA	Intergenic	CpG	321874	NM_013390	23670	Hs.494146	NM_013390	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
3.95774-17	chr1	32230107	32230606	+	0	NA	promoter-TSS (NM_001294335)	promoter-TSS (NM_001294335)	-692	NM_001294335	576	Hs.524138	NM_001703	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
2.29885-5	chr10	71993015	71993514	+	0	NA	promoter-TSS (NM_021129)	promoter-TSS (NM_021129)	-74	NM_021129	5464	Hs.437403	NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	pyrophosphatase (inorganic) 1	protein-coding
0.0966115-11	chr7	102921280	102921779	+	0	NA	promoter-TSS (NR_003561)	promoter-TSS (NR_003561)	-616	NR_027768	349152	Hs.732579	NM_182634	ENSG00000170629	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
0.0130484-14	chr19	39220215	39220714	+	0	NA	TTS (NM_144691)	TTS (NM_144691)	14650	NM_144691	147968	Hs.731775	NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
1.64309	chr3	50860562	50861061	+	0	NA	intron (NM_004947, intron 2 of 52)	SVA_D|Other|Other	148139	NM_004947	1795	Hs.476284	NM_004947	ENSG00000088538	DOCK3	MOCA|PBP	dedicator of cytokinesis 3	protein-coding
0.400052-4	chr1	219859031	219859530	+	0	NA	Intergenic	Intergenic	-128614	NR_135822	102723886	Hs.525963	NR_135822		LOC102723886	-	uncharacterized LOC102723886	ncRNA
0.824945-9	chr19	13266262	13266761	+	0	NA	TTS (NM_004907)	TTS (NM_004907)	5229	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
6.34512-12	chr9	139953210	139953709	+	0	NA	Intergenic	Intergenic	-4956	NM_203468	954	Hs.123036	NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
3.21482-6	chr2	132430150	132430649	+	0	NA	Intergenic	Intergenic	35801	NR_108087	101927994	Hs.635757	NR_108087	ENSG00000224559	LINC01087	-	long intergenic non-protein coding RNA 1087	ncRNA
7.42321-6	chr1	178614516	178615015	+	0	NA	Intergenic	Intergenic	-32119	NR_039622	100616328		NR_039622	ENSG00000266417	MIR4424	-	microRNA 4424	ncRNA
3.19664-10	chr6	64940328	64940827	+	0	NA	exon (NM_001142800, exon 31 of 43)	exon (NM_001142800, exon 31 of 43)	584146	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
7.77284-3	chr13	96600862	96601361	+	0	NA	intron (NM_020121, intron 13 of 38)	THE1C|LTR|ERVL-MaLR	104625	NM_020121	55757	Hs.193226	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
1.79142-10	chr4	143861743	143862242	+	0	NA	Intergenic	Intergenic	-94304	NM_003866	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
18.8606-5	chr2	159901482	159901981	+	0	NA	intron (NM_033394, intron 2 of 26)	AluSx|SINE|Alu	76585	NM_033394	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
17.2354-2	chr8	58982466	58982965	+	0	NA	intron (NM_147189, intron 3 of 4)	intron (NM_147189, intron 3 of 4)	75602	NM_147189	90362	Hs.154652	NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
1.18045-6	chr9	69381447	69381946	+	0	NA	promoter-TSS (NM_001098805)	promoter-TSS (NM_001098805)	-285	NM_001098805	728747	Hs.645502	NM_001098805	ENSG00000172014	ANKRD20A4	-	ankyrin repeat domain 20 family member A4	protein-coding
1.02373	chr6	108124796	108125295	+	0	NA	intron (NM_198081, intron 1 of 7)	SVA_D|Other|Other	20476	NM_198081	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
0.154727-3	chr4	168998116	168998615	+	0	NA	Intergenic	Intergenic	-15323	NM_007193	11199	Hs.188401	NM_007193	ENSG00000109511	ANXA10	ANX14	annexin A10	protein-coding
2.74905-6	chr20	45834071	45834570	+	0	NA	Intergenic	L2b|LINE|L2	38711	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
1.51195-6	chr9	108639957	108640456	+	0	NA	Intergenic	Intergenic	183400	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
0.070049-37	chr12	54753189	54753688	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	4832	NM_020370	53831	Hs.306199	NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
0.109954-16	chr8	81243833	81244332	+	0	NA	Intergenic	Intergenic	90458	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
3.86158-2	chr13	44883929	44884428	+	0	NA	Intergenic	Intergenic	-63608	NM_001346980	387923	Hs.377972	NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
0.11441-15	chr19	48825064	48825563	+	0	NA	Intergenic	CpG	-1981	NM_144577	93233	Hs.112645	NM_144577	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
4.03403	chr19	29894716	29895215	+	0	NA	intron (NR_040029, intron 3 of 9)	intron (NR_040029, intron 3 of 9)	121694	NR_040029	284395	Hs.631601	NR_040029	ENSG00000264515	LOC284395	-	uncharacterized LOC284395	ncRNA
0.141246-19	chr10	14920233	14920732	+	0	NA	promoter-TSS (NM_001193424)	promoter-TSS (NM_001193424)	-300	NR_034181	79723	Hs.554883	NM_024670	ENSG00000152455	SUV39H2	KMT1B	suppressor of variegation 3-9 homolog 2	protein-coding
0.00434512-28	chr12	101062631	101063130	+	0	NA	Intergenic	Intergenic	75484	NM_001303131	283431	Hs.20575	NM_174942	ENSG00000139354	GAS2L3	G2L3	growth arrest specific 2 like 3	protein-coding
1.53045-15	chr17	48255600	48256099	+	0	NA	Intergenic	Intergenic	-6012	NR_024192	373861	Hs.25934	NM_194072		HILS1	H1.9	histone linker H1 domain, spermatid-specific 1 (pseudogene)	pseudo
2.58061-14	chr1	205782443	205782942	+	0	NA	promoter-TSS (NM_173854)	promoter-TSS (NM_173854)	-368	NM_173854	254428	Hs.20274	NM_173854	ENSG00000133065	SLC41A1	MgtE	solute carrier family 41 member 1	protein-coding
11.0237-2	chr4	48188991	48189490	+	0	NA	intron (NM_003215, intron 2 of 17)	SVA_B|Other|Other	-52967	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
0.634863-8	chr19	1470373	1470872	+	0	NA	3' UTR (NM_005883, exon 15 of 15)	3' UTR (NM_005883, exon 15 of 15)	8606	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
1.38466-14	chr6	103570763	103571262	+	0	NA	Intergenic	L1MDa|LINE|L1	1724151	NM_021956	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
0.222764-16	chr1	28844469	28845169	+	0	NA	promoter-TSS (NM_001269)	promoter-TSS (NM_001269)	74	NM_001269	1104	Hs.469723	NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I|SNHG3-RCC1	regulator of chromosome condensation 1	protein-coding
4.86782-10	chr16	30546902	30547401	+	0	NA	promoter-TSS (NM_001305018)	promoter-TSS (NM_001305018)	-860	NM_023931	65988	Hs.592032	NM_023931	ENSG00000169955	ZNF747	-	zinc finger protein 747	protein-coding
0.809219-17	chr19	38827374	38827873	+	0	NA	intron (NM_001330496, intron 1 of 27)	G-rich|Low_complexity|Low_complexity	1180	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding
2.37321	chr2	232581885	232582384	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	4110	NR_128710	103504734		NR_128710	ENSG00000283475	MIR1244-4	hsa-mir-1244-4	microRNA 1244-4	ncRNA
20.9691-4	chr1	203610105	203610604	+	0	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	14439	NM_001001396	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
3.44862-12	chr17	872143	872642	+	0	NA	intron (NM_022463, intron 1 of 7)	MIR|SINE|MIR	10606	NM_022463	64359	Hs.527989	NM_022463	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
0.357404-19	chr22	43438371	43438870	+	0	NA	intron (NR_125362, intron 2 of 2)	intron (NR_125362, intron 2 of 2)	4029	NR_125362	100506679	Hs.706553	NR_125362	ENSG00000230319	LOC100506679	-	uncharacterized LOC100506679	ncRNA
0.93665-5	chr10	32635853	32636352	+	0	NA	promoter-TSS (NR_104160)	promoter-TSS (NR_104160)	44	NM_001272004	80314	Hs.167805	NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
19.8716	chr2	162291052	162291551	+	0	NA	Intergenic	L1PA15|LINE|L1	18696	NM_006593	10716	Hs.210862	NM_006593	ENSG00000136535	TBR1	TBR-1|TES-56	T-box, brain 1	protein-coding
0.798767-15	chr16	4443024	4443523	+	0	NA	intron (NR_145128, intron 7 of 27)	intron (NR_145128, intron 7 of 27)	21424	NM_138440	114990	Hs.372579	NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
18.4771	chr1	118643486	118643985	+	0	NA	intron (NM_206996, intron 5 of 48)	L2c|LINE|L2	84113	NM_206996	200162	Hs.528821	NM_206996	ENSG00000155761	SPAG17	CT143|PF6	sperm associated antigen 17	protein-coding
29.1721-3	chr1	159897736	159898235	+	0	NA	exon (NM_020789, exon 19 of 21)	exon (NM_020789, exon 19 of 21)	-2653	NM_003564	8407	Hs.517168	NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
2.70026-7	chr3	97199022	97199521	+	0	NA	intron (NM_173655, intron 7 of 12)	SVA_B|Other|Other	40834	NM_001278300	285220	Hs.272208	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
7.07744-4	chr1	29737009	29737508	+	0	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	-60632	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LINC01756	-	long intergenic non-protein coding RNA 1756	ncRNA
3.80907-2	chr6	20404276	20404775	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	615	NM_001243076	1871	Hs.269408	NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
2.51037-2	chr15	75660127	75660626	+	0	NA	intron (NM_001256494, intron 2 of 25)	intron (NM_001256494, intron 2 of 25)	592	NM_006715	4123	Hs.26232	NM_006715	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
20.4964-3	chr12	120826383	120827131	+	0	NA	Intergenic	MIRc|SINE|MIR	-19774	NM_002442	4440	Hs.158311	NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
6.32644-4	chr4	173314243	173314742	+	0	NA	intron (NM_001034845, intron 5 of 12)	intron (NM_001034845, intron 5 of 12)	295576	NR_125895	101928314	Hs.566023	NR_125894		LOC101928314	-	uncharacterized LOC101928314	ncRNA
6.86133-3	chr6	120184738	120185237	+	0	NA	Intergenic	Intergenic	-151338	NR_036098	100422951		NR_036098	ENSG00000265725	MIR3144	mir-3144	microRNA 3144	ncRNA
4.17937-10	chr7	137284664	137285163	+	0	NA	intron (NM_001321709, intron 11 of 33)	AluJb|SINE|Alu	246165	NM_001321709	9162	Hs.242947	NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding
6.59556	chr2	197036142	197036641	+	0	NA	promoter-TSS (NM_004226)	promoter-TSS (NM_004226)	-55	NM_004226	9262	Hs.88297	NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
6.61544-5	chr16	89574436	89574935	+	0	NA	promoter-TSS (NM_199367)	promoter-TSS (NM_199367)	-111	NM_003119	6687	Hs.185597	NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding
7.42321-11	chr4	99064014	99064513	+	0	NA	exon (NM_174952, exon 1 of 11)	exon (NM_174952, exon 1 of 11)	128	NM_174952	285555	Hs.680226	NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
21.9586	chr20	11266493	11266992	+	0	NA	Intergenic	Intergenic	-12711	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
6.8403-5	chr15	70386921	70387420	+	0	NA	promoter-TSS (NM_001282982)	promoter-TSS (NM_001282982)	-46	NM_001282982	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
0.301184-4	chr5	179189084	179189583	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	29482	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
6.16185-16	chr1	207925945	207926444	+	0	NA	intron (NM_172350, intron 1 of 9)	intron (NM_172350, intron 1 of 9)	811	NM_172361	4179	Hs.510402	NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
17.5696-6	chr3	8597275	8597774	+	0	NA	intron (NM_001278234, intron 3 of 4)	MER58A|DNA|hAT-Charlie	-15944	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312	long intergenic non-protein coding RNA 312	ncRNA
0.589858-34	chr3	133103211	133103710	+	0	NA	intron (NM_023943, intron 4 of 5)	intron (NM_023943, intron 4 of 5)	-15379	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
1.92465-7	chr21	47205547	47206046	+	0	NA	Intergenic	SVA_D|Other|Other	50537	NR_038876	100129027	Hs.689591	NR_038876	ENSG00000205424	LOC100129027	-	uncharacterized LOC100129027	ncRNA
11.986	chr20	10309966	10310465	+	0	NA	Intergenic	Intergenic	102358	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
1.55523-4	chr16	23521576	23522075	+	0	NA	promoter-TSS (NM_015044)	promoter-TSS (NM_015044)	-10	NM_015044	23062	Hs.460336	NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
5.05845-8	chr14	21776795	21777294	+	0	NA	intron (NM_020366, intron 6 of 23)	LTR9B|LTR|ERV1	20908	NM_020366	57096	Hs.126035	NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding
0.570004-7	chr8	105235232	105235731	+	0	NA	promoter-TSS (NM_001282882)	promoter-TSS (NM_001282882)	-82	NM_001282882	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
17.9588-8	chr3	194815922	194816421	+	0	NA	intron (NR_104188, intron 2 of 3)	intron (NR_104188, intron 2 of 3)	854	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
24.2946	chr9	116693543	116694042	+	0	NA	intron (NM_001318040, intron 1 of 13)	intron (NM_001318040, intron 1 of 13)	55230	NM_001318042	114991	Hs.349208	NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
1.81115-24	chr19	35707720	35708219	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	11659	NM_152481	148109	Hs.128069	NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
1.26098-9	chr3	135969646	135970145	+	0	NA	intron (NM_000532, intron 1 of 14)	intron (NM_000532, intron 1 of 14)	728	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase beta subunit	protein-coding
3.06273-13	chr3	22266642	22267141	+	0	NA	Intergenic	LTR16C|LTR|ERVL	268260	NR_046876	100874221	Hs.160616	NR_046876	ENSG00000223351	ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
9.87163-17	chr17	80250462	80250961	+	0	NA	promoter-TSS (NR_135639)	promoter-TSS (NR_135639)	-21	NR_135639	101929511	Hs.147682	NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
5.22879-26	chr5	78208195	78208694	+	0	NA	intron (NM_198709, intron 5 of 7)	intron (NM_198709, intron 5 of 7)	73322	NM_198709	411	Hs.149103	NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
0.366845-9	chr7	121036248	121036747	+	0	NA	promoter-TSS (NM_014888)	promoter-TSS (NM_014888)	-75	NM_001040020	10447	Hs.434053	NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	family with sequence similarity 3 member C	protein-coding
12.2915-3	chr9	23551365	23551864	+	0	NA	intron (NR_121602, intron 13 of 27)	intron (NR_121602, intron 13 of 27)	120783	NR_121602	101929563	Hs.533220	NR_121602		LOC101929563	-	uncharacterized LOC101929563	ncRNA
3.87216-6	chr1	911376	911875	+	0	NA	exon (NM_001291366, exon 4 of 4)	exon (NM_001291366, exon 4 of 4)	5872	NM_001291366	84808	Hs.271462	NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
33.2975	chr12	26775435	26775934	+	0	NA	intron (NM_002223, intron 24 of 56)	intron (NM_002223, intron 24 of 56)	210447	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
1.7134-12	chr14	72398831	72399330	+	0	NA	promoter-TSS (NR_135235)	promoter-TSS (NR_135235)	-76	NM_001204424	9628	Hs.509872	NM_004296	ENSG00000182732	RGS6	GAP|HA117|S914	regulator of G-protein signaling 6	protein-coding
0.510982-17	chr14	35180305	35180804	+	0	NA	non-coding (NR_028131, exon 4 of 4)	non-coding (NR_028131, exon 4 of 4)	2469	NM_021914	1073	Hs.180141	NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
3.30683-11	chr12	107380699	107381198	+	0	NA	promoter-TSS (NM_025198)	promoter-TSS (NM_025198)	-4	NM_001033050	80298	Hs.5009	NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
1.19186-44	chr10	48426846	48427345	+	0	NA	intron (NM_004962, intron 2 of 2)	intron (NM_004962, intron 2 of 2)	-10223	NM_016204	2658	Hs.279463	NM_016204	ENSG00000263761	GDF2	BMP-9|BMP9|HHT5	growth differentiation factor 2	protein-coding
0.163737	chr13	46421378	46421877	+	0	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	4219	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
13.279-8	chr8	94573515	94574014	+	0	NA	intron (NR_033858, intron 6 of 10)	intron (NR_033858, intron 6 of 10)	138897	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
1.94499-2	chr2	147956097	147956596	+	0	NA	Intergenic	Intergenic	611721	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
14.3533	chr18	46986824	46987323	+	0	NA	promoter-TSS (NM_017653)	promoter-TSS (NM_017653)	6	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
1.43271-33	chr8	17658003	17658502	+	0	NA	5' UTR (NM_001001925, exon 1 of 14)	5' UTR (NM_001001925, exon 1 of 14)	174	NM_001001924	57509	Hs.7946	NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
8.06875-2	chr7	94261878	94262377	+	0	NA	intron (NM_001346717, intron 1 of 9)	intron (NM_001346717, intron 1 of 9)	23394	NM_001346719	8910	Hs.371199	NM_003919	ENSG00000127990	SGCE	DYT11|ESG|epsilon-SG	sarcoglycan epsilon	protein-coding
2.13249-2	chr2	25513741	25514240	+	0	NA	intron (NM_022552, intron 3 of 22)	intron (NM_022552, intron 3 of 22)	37600	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
1.13509-4	chr12	87863637	87864136	+	0	NA	Intergenic	MER4D1|LTR|ERV1	139370	NR_135020	105369879	Hs.552351	NR_135020		LOC105369879	-	uncharacterized LOC105369879	ncRNA
1.53045-3	chr10	111643862	111644361	+	0	NA	intron (NM_020383, intron 8 of 20)	intron (NM_020383, intron 8 of 20)	38893	NM_001324136	7511	Hs.390623	NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
2.62013-22	chr3	154146588	154147087	+	0	NA	exon (NM_001038705, exon 1 of 4)	exon (NM_001038705, exon 1 of 4)	667	NM_001038705	344758	Hs.688231	NM_001038705	ENSG00000174948	GPR149	IEDA|PGR10	G protein-coupled receptor 149	protein-coding
15.5909-3	chr2	50353936	50354435	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-152844	NM_001320156	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
6.51695-14	chr13	101326575	101327518	+	0	NA	5' UTR (NM_001079669, exon 1 of 18)	5' UTR (NM_001079669, exon 1 of 18)	143	NM_001286453	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
0.32452-22	chr12	30741493	30741992	+	0	NA	Intergenic	L1PA4|LINE|L1	88436	NM_001190995	10526	Hs.505136	NM_006390	ENSG00000133704	IPO8	RANBP8	importin 8	protein-coding
5.55955-10	chr3	196737851	196738350	+	0	NA	intron (NM_005929, intron 9 of 15)	intron (NM_005929, intron 9 of 15)	8323	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1	MELTF antisense RNA 1	ncRNA
17.0115	chr7	129193919	129194418	+	0	NA	Intergenic	Intergenic	51848	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
14.1117-3	chr8	130984424	130984923	+	0	NA	intron (NR_046360, intron 1 of 14)	AluJo|SINE|Alu	-32522	NM_001330612	51571	Hs.126941	NM_016623	ENSG00000153310	FAM49B	BM-009|L1	family with sequence similarity 49 member B	protein-coding
4.22508-6	chr2	206753825	206754324	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	196832	NM_017759	54891	Hs.445036	NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
6.07303-4	chr2	158022101	158022600	+	0	NA	Intergenic	MER52A|LTR|ERV1	-91760	NM_014568	11227	Hs.269027	NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
0.268721-19	chr5	40823525	40824024	+	0	NA	Intergenic	LTR41|LTR|ERVL	5470	NR_037665	100506548	Hs.80545	NR_037665		LOC100506548	-	uncharacterized LOC100506548	ncRNA
0.423927-16	chr4	91494095	91494594	+	0	NA	intron (NM_001145065, intron 5 of 10)	L1MA6|LINE|L1	338162	NM_207491	401145	Hs.654735	NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding
2.5649-7	chr4	58039765	58040264	+	0	NA	intron (NR_034081, intron 1 of 4)	SVA_D|Other|Other	-63463	NM_001553	3490	Hs.479808	NM_001553	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin like growth factor binding protein 7	protein-coding
2.96709-8	chr2	120124190	120124689	+	0	NA	promoter-TSS (NM_001322331)	promoter-TSS (NM_001322331)	-35	NM_001322332	130355	Hs.99488	NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
0.0524306-15	chr7	45194163	45194662	+	0	NA	Intergenic	Intergenic	-2955	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
7.16699-3	chr2	226264123	226264622	+	0	NA	Intergenic	Intergenic	-1230	NM_020864	57624	Hs.224409	NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
4.14539-7	chr10	43048059	43048558	+	0	NA	promoter-TSS (NR_026777)	promoter-TSS (NR_026777)	10	NR_026777	100129482	Hs.278064	NR_026777	ENSG00000234420	ZNF37BP	KOX21|ZNF37B	zinc finger protein 37B, pseudogene	pseudo
2.55707-9	chr20	50956477	50956976	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-148202	NM_199427	55734	Hs.473082	NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
0.231917-22	chr14	104544244	104544743	+	0	NA	Intergenic	LTR41|LTR|ERVL	-7530	NM_001080464	374569	Hs.146239	NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT	asparaginase	protein-coding
4.14539-13	chr18	19321488	19321987	+	0	NA	exon (NM_020774, exon 1 of 21)	exon (NM_020774, exon 1 of 21)	447	NM_020774	57534	Hs.140903	NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	mindbomb E3 ubiquitin protein ligase 1	protein-coding
0.127808-21	chrX	107511544	107512043	+	0	NA	intron (NM_001847, intron 3 of 44)	intron (NM_001847, intron 3 of 44)	169867	NM_001287759	1288	Hs.145586	NM_001847	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3|DFNX6	collagen type IV alpha 6 chain	protein-coding
9.1364-25	chr19	10349007	10349506	+	0	NA	Intergenic	MIR|SINE|MIR	-7308	NM_004230	9294	Hs.655405	NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
0.545314-19	chr2	241796690	241797189	+	0	NA	Intergenic	Intergenic	-11223	NM_000030	189	Hs.144567	NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6	alanine-glyoxylate aminotransferase	protein-coding
7.67004-6	chr9	107573155	107573654	+	0	NA	intron (NM_005502, intron 28 of 49)	intron (NM_005502, intron 28 of 49)	47382	NR_130759	55335	Hs.429294	NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
0.2365-7	chr11	114692223	114692722	+	0	NA	Intergenic	Intergenic	143272	NM_182495	120406	Hs.446760	NM_182495	ENSG00000204361	NXPE2	FAM55B	neurexophilin and PC-esterase domain family member 2	protein-coding
0.329203-6	chr13	63507871	63508370	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-126628	NR_120403	100874176	Hs.402083	NR_047029		LINC00448	-	long intergenic non-protein coding RNA 448	ncRNA
2.54145-4	chr4	185304587	185305086	+	0	NA	Intergenic	Intergenic	-1376	NR_125933	102723766	Hs.432281	NR_125933	ENSG00000249096	LOC102723766	-	uncharacterized LOC102723766	ncRNA
3.8934-3	chr16	88012920	88013419	+	0	NA	intron (NM_001173540, intron 2 of 12)	intron (NM_001173540, intron 2 of 12)	9545	NM_001173543	54971	Hs.461705	NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
0.700704-10	chr11	121336983	121337482	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	14320	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
8.47712-2	chr1	27901743	27902242	+	0	NA	intron (NM_001029882, intron 1 of 6)	CpG	28013	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	MRD25	AT-hook DNA binding motif containing 1	protein-coding
32.4336	chr2	69026635	69027134	+	0	NA	intron (NM_014882, intron 3 of 9)	intron (NM_014882, intron 3 of 9)	24951	NM_001166276	9938	Hs.531807	NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
2.59637-3	chr3	166785183	166785682	+	0	NA	Intergenic	Intergenic	168961	NR_135545	105374194		NR_135545		LOC105374194	inv3q26.1	uncharacterized LOC105374194	ncRNA
25.3462	chr4	114328582	114329081	+	0	NA	Intergenic	Intergenic	255393	NR_107049	102465878		NR_107049	ENSG00000275810	MIR8082	hsa-mir-8082	microRNA 8082	ncRNA
5.48214	chr11	118592158	118592657	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-42026	NM_001301065	11181	Hs.129712	NM_007180	ENSG00000118094	TREH	TRE|TREA	trehalase	protein-coding
1.29011-2	chr1	38412477	38412976	+	0	NA	promoter-TSS (NM_005540)	promoter-TSS (NM_005540)	3	NM_005540	3633	Hs.449942	NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
15.5909	chr6	158448731	158449230	+	0	NA	intron (NM_003898, intron 2 of 26)	intron (NM_003898, intron 2 of 26)	10900	NM_001178088	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
18.2102-4	chrX	90377224	90377723	+	0	NA	Intergenic	Intergenic	-312124	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	poly(A) binding protein cytoplasmic 5	protein-coding
0.172766	chr11	66623808	66624307	+	0	NA	promoter-TSS (NM_024036)	promoter-TSS (NM_024036)	-819	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
2.09012-5	chr3	195908066	195908565	+	0	NA	Intergenic	MIR|SINE|MIR	29985	NM_001039617	131540	Hs.111591	NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type containing 19	protein-coding
5.78396-9	chr2	99486277	99486776	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	66158	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
7.37549-12	chr5	66892738	66893237	+	0	NA	Intergenic	L1PA16|LINE|L1	-196054	NR_130779	101928858	Hs.334066	NR_130779	ENSG00000249364	LOC101928858	-	uncharacterized LOC101928858	ncRNA
0.428718-16	chr2	127932431	127932930	+	0	NA	Intergenic	Intergenic	30663	NM_001001665	339761	Hs.407639	NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
0.315171-12	chr9	43915238	43915737	+	0	NA	non-coding (NR_111893, exon 22 of 24)	non-coding (NR_111893, exon 22 of 24)	230291	NR_111893	643827	Hs.521495	NM_001012280		CNTNAP3P2	-	contactin associated protein-like 3 pseudogene 2	pseudo
0.619809-5	chr5	73937013	73937512	+	0	NA	promoter-TSS (NM_003633)	promoter-TSS (NM_003633)	-13	NM_001256574	8507	Hs.104925	NM_003633	ENSG00000171617	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1	protein-coding
5.85027-8	chr7	157903870	157904369	+	0	NA	intron (NM_130842, intron 8 of 21)	intron (NM_130842, intron 8 of 21)	256842	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
3.26058-4	chr6	160248286	160248785	+	0	NA	Intergenic	Intergenic	27254	NM_173516	154197	Hs.349077	NM_173516	ENSG00000146453	PNLDC1	-	PARN like, ribonuclease domain containing 1	protein-coding
37.5449	chr14	51862053	51862552	+	0	NA	Intergenic	Intergenic	62191	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	-	long intergenic non-protein coding RNA 640	ncRNA
3.12471-5	chr12	111945457	111945956	+	0	NA	intron (NM_001310123, intron 12 of 21)	SVA_D|Other|Other	73040	NM_001291424	10019	Hs.506784	NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
3.99027-30	chr8	138427030	138427529	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-1448	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
4.84126-2	chr13	95363321	95364230	+	0	NA	exon (NM_007084, exon 1 of 1)	exon (NM_007084, exon 1 of 1)	1022	NM_007084	11166	Hs.187577	NM_007084	ENSG00000125285	SOX21	SOX25	SRY-box 21	protein-coding
2.18963-10	chr2	185556830	185557329	+	0	NA	intron (NM_194250, intron 1 of 3)	intron (NM_194250, intron 1 of 3)	93986	NM_194250	91752	Hs.159528	NM_194250	ENSG00000170396	ZNF804A	C2orf10	zinc finger protein 804A	protein-coding
1.70696-4	chr2	7410011	7410510	+	0	NA	Intergenic	Intergenic	-151132	NR_038432	100506274	Hs.177930	NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
1.70696-15	chr9	38371373	38371872	+	0	NA	Intergenic	Intergenic	-21039	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
3.00162-14	chr2	204450080	204450579	+	0	NA	Intergenic	Intergenic	-50270	NM_001329728	65059	Hs.471162	NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
6.05548-8	chr17	53644907	53645406	+	0	NA	Intergenic	Intergenic	-145815	NM_012329	23531	Hs.463483	NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
0.132283-35	chr7	6205649	6206148	+	0	NA	intron (NM_004227, intron 9 of 12)	intron (NM_004227, intron 9 of 12)	61348	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
0.352691	chr1	46016209	46016708	+	0	NA	promoter-TSS (NM_001202413)	promoter-TSS (NM_001202413)	3	NM_006066	10327	Hs.474584	NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
2.97569-14	chr7	150475709	150476208	+	0	NA	Intergenic	Intergenic	21663	NM_001101312	28959	Hs.647090	NM_014020	ENSG00000106565	TMEM176B	LR8|MS4B2	transmembrane protein 176B	protein-coding
3.87216-2	chr16	83932832	83933331	+	0	NA	exon (NM_012213, exon 1 of 5)	exon (NM_012213, exon 1 of 5)	351	NM_012213	23417	Hs.644610	NM_012213	ENSG00000103150	MLYCD	MCD	malonyl-CoA decarboxylase	protein-coding
1.66216-9	chr15	80352040	80352539	+	0	NA	promoter-TSS (NM_001242913)	promoter-TSS (NM_001242913)	17	NM_001242913	54469	Hs.596679	NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
0.34328-10	chr9	137000645	137001144	+	0	NA	promoter-TSS (NM_017588)	promoter-TSS (NM_017588)	-316	NM_017588	11091	Hs.397638	NM_017588	ENSG00000196363	WDR5	BIG-3|CFAP89|SWD3	WD repeat domain 5	protein-coding
5.0307-2	chr21	32767420	32767919	+	0	NA	intron (NM_003253, intron 2 of 28)	intron (NM_003253, intron 2 of 28)	163621	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
0.231917-47	chr1	45769310	45769809	+	0	NA	promoter-TSS (NR_024270)	promoter-TSS (NR_024270)	-23	NR_024270	400752	Hs.334348	NR_024270	ENSG00000281912	LINC01144	-	long intergenic non-protein coding RNA 1144	ncRNA
0.118872-5	chr19	19471822	19472321	+	0	NA	Intergenic	L1MB5|LINE|L1	-24571	NM_017660	54815	Hs.118964	NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
30.8884	chr1	64768434	64768933	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	99382	NM_152489	148581	Hs.388746	NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U (putative)	protein-coding
1.39662	chr7	107724321	107724820	+	0	NA	intron (NM_001318048, intron 14 of 17)	intron (NM_001318048, intron 14 of 17)	46231	NM_001318048	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
1.62412-6	chr11	62359281	62359780	+	0	NA	promoter-TSS (NM_022830)	promoter-TSS (NM_022830)	-421	NM_022830	64852	Hs.728983	NM_022830	ENSG00000149016	TUT1	PAPD2|RBM21|STARPAP|TUTase|URLC6	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding
30.4769	chr3	63761260	63761759	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-43532	NR_026866	132200	Hs.506386	NM_138808	ENSG00000163632	C3orf49	-	chromosome 3 open reading frame 49	ncRNA
0.101054-26	chr8	53162709	53163208	+	0	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	56036	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
0.385789-11	chr9	14271068	14271567	+	0	NA	intron (NM_001190737, intron 2 of 10)	intron (NM_001190737, intron 2 of 10)	42728	NM_005596	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
1.83759	chr6	92820114	92820613	+	0	NA	Intergenic	LTR56|LTR|ERV1	-420217	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
0.305841-12	chr8	12990600	12991099	+	0	NA	promoter-TSS (NM_006094)	promoter-TSS (NM_006094)	-40	NM_006094	10395	Hs.134296	NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
7.44727-6	chr6	33421756	33422255	+	0	NA	promoter-TSS (NM_152735)	promoter-TSS (NM_152735)	-351	NM_152735	221504	Hs.591805	NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
1.85087-6	chr5	14153119	14153618	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	9557	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
4.20216-2	chr6	28891535	28892034	+	0	NA	promoter-TSS (NM_006510)	promoter-TSS (NM_006510)	-16	NM_006510	5987	Hs.440382	NM_006510	ENSG00000204713	TRIM27	RFP|RNF76	tripartite motif containing 27	protein-coding
14.023-4	chr19	15749509	15750008	+	0	NA	Intergenic	Intergenic	-1949	NM_000896	4051	Hs.106242	NM_000896	ENSG00000186529	CYP4F3	CPF3|CYP4F|LTB4H	cytochrome P450 family 4 subfamily F member 3	protein-coding
3.42944	chr11	70049102	70049601	+	0	NA	promoter-TSS (NM_003824)	promoter-TSS (NM_003824)	82	NM_003824	8772	Hs.86131	NM_003824	ENSG00000168040	FADD	GIG3|MORT1	Fas associated via death domain	protein-coding
0.123337-31	chr3	126233707	126234206	+	0	NA	intron (NM_144639, intron 1 of 19)	intron (NM_144639, intron 1 of 19)	2660	NM_144639	131669	Hs.331148	NM_144639	ENSG00000159650	UROC1	HMFN0320|UROCD	urocanate hydratase 1	protein-coding
0.741724	chr9	38057727	38058226	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	11234	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
18.2391-3	chr8	73494283	73494782	+	0	NA	intron (NM_004770, intron 2 of 2)	MER70A|LTR|ERVL	44906	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
4.63442-7	chr16	85393878	85394377	+	0	NA	Intergenic	Intergenic	-54196	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
7.01147-20	chr7	113552919	113553418	+	0	NA	intron (NM_002711, intron 1 of 3)	intron (NM_002711, intron 1 of 3)	5914	NM_002711	5506	Hs.458309	NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding
3.40084-7	chr2	220407958	220408457	+	0	NA	promoter-TSS (NM_001303098)	promoter-TSS (NM_001303098)	-178	NM_001303098	130612	Hs.446664	NM_001005209	ENSG00000188760	TMEM198	TMEM198A	transmembrane protein 198	protein-coding
1.93142-7	chr3	122283263	122283762	+	0	NA	promoter-TSS (NM_001146106)	promoter-TSS (NM_001146106)	11	NM_001146103	83666	Hs.518200	NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
4.85452-7	chr1	11022513	11023012	+	0	NA	intron (NM_001170754, intron 5 of 12)	MIR|SINE|MIR	19332	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
14.2829-2	chrX	48330477	48330976	+	0	NA	Intergenic	Intergenic	-2082	NM_033518	92745	Hs.195155	NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
10.4576	chr17	46695838	46696337	+	0	NA	Intergenic	Intergenic	-3786	NM_024016	3218	Hs.514292	NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
16.9897-2	chr3	151487778	151488277	+	0	NA	promoter-TSS (NR_026915)	promoter-TSS (NR_026915)	-217	NR_026915	201651	Hs.383050	NR_026915	ENSG00000240602	AADACP1	-	arylacetamide deacetylase pseudogene 1	pseudo
2.57275-7	chr2	236462147	236462646	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	48001	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
0.172766-36	chr3	156892522	156893021	+	0	NA	Intergenic	CpG	-14222	NM_001308185	57018	Hs.4859	NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
1.49967-11	chr1	94343966	94344465	+	0	NA	intron (NM_014597, intron 1 of 6)	intron (NM_014597, intron 1 of 6)	547	NM_014597	30836	Hs.85769	NM_014597	ENSG00000067334	DNTTIP2	ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2	deoxynucleotidyltransferase terminal interacting protein 2	protein-coding
13.7986-5	chr4	567175	567674	+	0	NA	Intergenic	Intergenic	-51939	NM_001145291	5158	Hs.623810	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
0.990869-20	chr5	73871452	73871951	+	0	NA	Intergenic	Intergenic	-38900	NR_126354	104310351	Hs.582291	NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA
0.118872-47	chrX	133594232	133594731	+	0	NA	intron (NM_000194, intron 1 of 8)	CpG	306	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
0.2365-2	chr2	178196640	178197139	+	0	NA	non-coding (NR_026966, exon 4 of 9)	non-coding (NR_026966, exon 4 of 9)	-18279	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
4.89455-4	chr11	10315608	10316107	+	0	NA	promoter-TSS (NM_030962)	promoter-TSS (NM_030962)	-103	NM_030962	81846	Hs.577252	NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
0.47692-30	chr22	46474469	46474968	+	0	NA	Intergenic	Intergenic	-7159	NR_027033	400931	Hs.235838	NM_207477	ENSG00000197182	MIRLET7BHG	linc-Ppara	MIRLET7B host gene	ncRNA
2.82329-8	chr1	12841558	12842057	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	6816	NM_001080830	390999	Hs.156406	NM_001080830	ENSG00000116726	PRAMEF12	-	PRAME family member 12	protein-coding
0.757207	chr16	33569322	33569821	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2273	NR_130772	104644205	Hs.742548	NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
1.6813-11	chr6	44191333	44191832	+	0	NA	5' UTR (NM_001078177, exon 1 of 14)	5' UTR (NM_001078177, exon 1 of 14)	219	NM_001078177	2030	Hs.25450	NM_004955	ENSG00000112759	SLC29A1	ENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
0.91515-26	chr19	45616868	45617367	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	20686	NM_019121	284352	Hs.285363	NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
2.24026-9	chr22	25048560	25049059	+	0	NA	intron (NR_024593, intron 1 of 5)	intron (NR_024593, intron 1 of 5)	6305	NR_024593	646074	Hs.531306	NM_001025230		POM121L10P	-	POM121 transmembrane nucleoporin like 10, pseudogene	pseudo
2.33587-3	chr8	95566158	95566657	+	0	NA	promoter-TSS (NM_015496)	promoter-TSS (NM_015496)	-661	NM_183009	25962	Hs.202238	NM_015496	ENSG00000164944	KIAA1429	MSTP054|fSAP121	KIAA1429	protein-coding
63.4679-2	chr7	108102032	108102531	+	0	NA	Intergenic	Intergenic	-5440	NM_005010	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
0.472076-24	chr11	46958036	46958535	+	0	NA	promoter-TSS (NM_001003676)	promoter-TSS (NM_001003676)	45	NM_001003676	79096	Hs.368296	NM_024113	ENSG00000149179	C11orf49	-	chromosome 11 open reading frame 49	protein-coding
0.736576-29	chr12	132312681	132313180	+	0	NA	promoter-TSS (NM_016155)	promoter-TSS (NM_016155)	-8	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
0.227338-15	chr4	188527598	188528097	+	0	NA	intron (NR_110436, intron 2 of 2)	intron (NR_110436, intron 2 of 2)	65948	NR_110436	100506272	Hs.508163	NR_110436	ENSG00000250590	LOC100506272	-	uncharacterized LOC100506272	ncRNA
3.26058-5	chr11	65029114	65029613	+	0	NA	promoter-TSS (NM_002689)	promoter-TSS (NM_002689)	40	NM_002689	23649	Hs.201897	NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
4.89455-5	chr14	59950586	59951085	+	0	NA	promoter-TSS (NM_001098625)	promoter-TSS (NM_001098625)	238	NR_138575	112849	Hs.729061	NM_144581	ENSG00000126790	L3HYPDH	C14orf149	trans-L-3-hydroxyproline dehydratase	protein-coding
2.51812-2	chr9	112859200	112859699	+	0	NA	intron (NM_001198656, intron 1 of 4)	SVA_D|Other|Other	-28332	NM_001136562	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding
1.33713-10	chr11	78365122	78365621	+	0	NA	3' UTR (NM_001098816, exon 34 of 34)	3' UTR (NM_001098816, exon 34 of 34)	-79462	NM_001243251	79731	Hs.503389	NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
7.37549-7	chr9	134050773	134051272	+	0	NA	intron (NM_005085, intron 23 of 35)	intron (NM_005085, intron 23 of 35)	-14480	NM_001318325	8021	Hs.654530	NM_005085	ENSG00000126883	NUP214	CAIN|CAN	nucleoporin 214	protein-coding
1.36677-8	chr7	73892379	73892878	+	0	NA	intron (NM_001199207, intron 1 of 26)	intron (NM_001199207, intron 1 of 26)	24508	NM_005685	9569	Hs.647056	NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
32.9757	chr1	162946298	162946797	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-91849	NM_001102445	5999	Hs.386726	NM_005613	ENSG00000117152	RGS4	RGP4|SCZD9	regulator of G-protein signaling 4	protein-coding
0.118872-51	chr13	43881864	43882363	+	0	NA	intron (NM_017993, intron 11 of 16)	intron (NM_017993, intron 11 of 16)	-140875	NR_120399	100874130	Hs.738887	NR_120399		ENOX1-AS2	-	ENOX1 antisense RNA 2	ncRNA
0.0305075-47	chr6	4775832	4776331	+	0	NA	promoter-TSS (NM_004824)	promoter-TSS (NM_004824)	-599	NM_004824	9425	Hs.269092	NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y-like	protein-coding
29.393-7	chr1	157329307	157329806	+	0	NA	Intergenic	MIRc|SINE|MIR	192754	NM_031281	83416	Hs.415950	NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
4.60924-3	chr11	128754499	128754998	+	0	NA	Intergenic	Intergenic	-6565	NM_000890	3762	Hs.444595	NM_000890	ENSG00000120457	KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium voltage-gated channel subfamily J member 5	protein-coding
1.56767-11	chr15	41047258	41047757	+	0	NA	promoter-TSS (NM_001323894)	promoter-TSS (NM_001323894)	27	NM_018145	55177	Hs.511067	NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
0.123337-10	chr15	93374928	93375427	+	0	NA	Intergenic	Intergenic	36463	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
1.81774-5	chr15	47476123	47476622	+	0	NA	promoter-TSS (NM_001198999)	promoter-TSS (NM_001198999)	-31	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
2.96709-6	chr11	67371268	67371767	+	0	NA	non-coding (NR_130935, exon 3 of 3)	non-coding (NR_130935, exon 3 of 3)	2660	NR_130935	100505621	Hs.382074	NM_173578	ENSG00000184224	C11orf72	-	chromosome 11 open reading frame 72	ncRNA
9.28118-4	chr21	39082757	39083256	+	0	NA	intron (NM_002240, intron 3 of 3)	intron (NM_002240, intron 3 of 3)	205735	NM_002240	3763	Hs.626242	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium voltage-gated channel subfamily J member 6	protein-coding
21.2494	chr5	43631368	43631867	+	0	NA	intron (NM_001331026, intron 6 of 20)	intron (NM_001331026, intron 6 of 20)	-28285	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
16.517	chr3	52070369	52070868	+	0	NA	Intergenic	Intergenic	19843	NM_001947	1849	Hs.591664	NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
11.4935-2	chr5	53452397	53452896	+	0	NA	intron (NM_019087, intron 2 of 4)	intron (NM_019087, intron 2 of 4)	-81233	NR_039664	100616233		NR_039664	ENSG00000265421	MIR4459	-	microRNA 4459	ncRNA
6.51695-3	chr1	29557203	29557702	+	0	NA	promoter-TSS (NM_001024732)	promoter-TSS (NM_001024732)	18	NM_016011	51102	Hs.183646	NM_016011	ENSG00000116353	MECR	CGI-63|FASN2B|NRBF1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding
0.0833099-22	chr15	49338521	49339020	+	0	NA	promoter-TSS (NM_014701)	promoter-TSS (NM_014701)	-10	NM_001193489	9728	Hs.9997	NM_014701	ENSG00000138593	SECISBP2L	SBP2L|SLAN	SECIS binding protein 2 like	protein-coding
3.95774	chr1	26662963	26663462	+	0	NA	exon (NM_001039775, exon 12 of 20)	exon (NM_001039775, exon 12 of 20)	17409	NM_001039775	55057	Hs.128738	NM_017977	ENSG00000176092	AIM1L	CRYBG2	absent in melanoma 1-like	protein-coding
11.1634-2	chr2	33651559	33652058	+	0	NA	Intergenic	Intergenic	8225	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
12.6761-8	chr1	17287167	17287666	+	0	NA	exon (NM_014675, exon 27 of 37)	exon (NM_014675, exon 27 of 37)	19757	NM_001135248	4237	Hs.389137	NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar associated protein 2	protein-coding
2.78189	chr6	73331755	73332254	+	0	NA	exon (NM_001160132, exon 1 of 14)	exon (NM_001160132, exon 1 of 14)	433	NM_001160133	56479	Hs.445324	NM_019842	ENSG00000185760	KCNQ5	Kv7.5	potassium voltage-gated channel subfamily Q member 5	protein-coding
0.268721	chr2	201770346	201770845	+	0	NA	Intergenic	Intergenic	13954	NM_001142356	60491	Hs.145284	NM_021824	ENSG00000196290	NIF3L1	ALS2CR1|CALS-7|MDS015	NGG1 interacting factor 3 like 1	protein-coding
0.070049-44	chr21	43171697	43172196	+	0	NA	intron (NM_020639, intron 2 of 7)	intron (NM_020639, intron 2 of 7)	-4945	NR_106872	102465488		NR_106872	ENSG00000275166	MIR6814	hsa-mir-6814	microRNA 6814	ncRNA
1.2436-3	chr11	8710284	8710783	+	0	NA	3' UTR (NM_000990, exon 5 of 5)	3' UTR (NM_000990, exon 5 of 5)	3547	NR_002977	677826	Hs.745552	NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
1.06793-12	chr1	65720320	65720819	+	0	NA	Intergenic	CpG	-9808	NM_001256865	9829	Hs.647643	NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
1.77832-3	chr9	123349671	123350170	+	0	NA	Intergenic	Intergenic	-7472	NM_018249	55755	Hs.269560	NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
5.51294-8	chr16	19708157	19708656	+	0	NA	intron (NM_001300743, intron 26 of 27)	intron (NM_001300743, intron 26 of 27)	-19372	NM_001305121	124152	Hs.460217	NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
5.70248-12	chr1	28969497	28969996	+	0	NA	promoter-TSS (NM_001135218)	promoter-TSS (NM_001135218)	-142	NM_005644	6883	Hs.530251	NM_005644	ENSG00000120656	TAF12	TAF2J|TAFII20	TATA-box binding protein associated factor 12	protein-coding
0.33389-4	chr2	230932849	230933348	+	0	NA	intron (NM_152527, intron 1 of 4)	CpG	617	NM_152527	151473	Hs.504317	NM_152527	ENSG00000163053	SLC16A14	MCT14	solute carrier family 16 member 14	protein-coding
2.51037-5	chr16	68678876	68679375	+	0	NA	5' UTR (NM_001317195, exon 1 of 16)	5' UTR (NM_001317195, exon 1 of 16)	386	NM_001317195	1001	Hs.191842	NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
0.809219-25	chr15	91409411	91409910	+	0	NA	Intergenic	Intergenic	-2162	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
0.0656377-7	chr9	75695128	75695627	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-71270	NM_000700	301	Hs.494173	NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
1.95861-13	chr12	104323681	104324180	+	0	NA	promoter-TSS (NR_037425)	promoter-TSS (NR_037425)	59	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
0.268721-46	chr8	56792847	56793346	+	0	NA	intron (NM_002350, intron 1 of 12)	CpG	710	NM_001111097	4067	Hs.491767	NM_002350	ENSG00000254087	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
7.37549-16	chr6	33385720	33386219	+	0	NA	promoter-TSS (NM_001014840)	promoter-TSS (NM_001014840)	96	NM_001014433	51596	Hs.520070	NM_015921	ENSG00000112514	CUTA	ACHAP|C6orf82	cutA divalent cation tolerance homolog	protein-coding
10.1728-2	chr10	72727677	72728176	+	0	NA	Intergenic	MIRc|SINE|MIR	29116	NR_134313	105378349	Hs.119164	NR_134313	ENSG00000259267	LOC105378349	-	uncharacterized LOC105378349	ncRNA
0.47692-19	chr3	184279081	184279580	+	0	NA	promoter-TSS (NM_004443)	promoter-TSS (NM_004443)	-257	NM_004443	2049	Hs.2913	NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
9.50782-21	chr3	78777866	78778365	+	0	NA	intron (NM_002941, intron 5 of 30)	intron (NM_002941, intron 5 of 30)	290494	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding
2.0621-7	chr9	33523324	33524183	+	0	NA	promoter-TSS (NM_001244752)	promoter-TSS (NM_001244752)	-658	NM_001244752	441459	Hs.493710	NM_001013728	ENSG00000230453	ANKRD18B	bA255A11.3|bA255A11.5	ankyrin repeat domain 18B	protein-coding
2.79014-14	chr7	130560017	130560516	+	0	NA	Intergenic	Intergenic	1303	NR_029503	407021		NR_029503	ENSG00000226380	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
0.0305075-6	chr2	50452036	50452535	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	122607	NM_001330091	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
0.0392635-29	chr6	141642461	141642960	+	0	NA	Intergenic	L1M3d|LINE|L1	637759	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
1.43271-24	chr11	35413685	35414184	+	0	NA	intron (NM_001252652, intron 1 of 11)	intron (NM_001252652, intron 1 of 11)	27171	NM_004171	6506	Hs.502338	NM_004171	ENSG00000110436	SLC1A2	EAAT2|EIEE41|GLT-1|HBGT	solute carrier family 1 member 2	protein-coding
4.55932-11	chr16	77272467	77272966	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	39367	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
1.07349-12	chr12	51611837	51612336	+	0	NA	promoter-TSS (NR_026893)	promoter-TSS (NR_026893)	-547	NR_026893	5463	Hs.555886	NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
0.520764-7	chrX	95940448	95940947	+	0	NA	intron (NM_007309, intron 1 of 26)	intron (NM_007309, intron 1 of 26)	1035	NM_006729	1730	Hs.226483	NM_006729	ENSG00000147202	DIAPH2	DIA|DIA2|DRF2|POF|POF2	diaphanous related formin 2	protein-coding
1.91114-11	chr20	35724003	35724502	+	0	NA	exon (NM_002895, exon 1 of 22)	exon (NM_002895, exon 1 of 22)	366	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
1.53045-6	chr19	4457613	4458112	+	0	NA	promoter-TSS (NM_025241)	promoter-TSS (NM_025241)	-71	NM_025241	80700	Hs.435255	NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
9.17215-5	chr17	80477034	80477533	+	0	NA	promoter-TSS (NM_004514)	promoter-TSS (NM_004514)	-311	NM_004514	3607	Hs.591140	NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
4.77556-10	chr11	74854076	74854575	+	0	NA	Intergenic	Intergenic	-7707	NM_001145212	11309	Hs.7884	NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
2.66001-24	chr7	6746342	6746841	+	0	NA	promoter-TSS (NM_006956)	promoter-TSS (NM_006956)	-25	NM_006956	7559	Hs.431471	NM_006956	ENSG00000164631	ZNF12	GIOT-3|HZF11|KOX3|ZNF325	zinc finger protein 12	protein-coding
0.736576-14	chr4	7367188	7367687	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	55260	NR_039961	100616471		NR_039961	ENSG00000264658	MIR4798	-	microRNA 4798	ncRNA
0.227338-25	chr2	106458848	106459347	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-9107	NM_001004720	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
0.0921731-8	chr13	50656010	50656953	+	0	NA	non-coding (NR_109974, exon 1 of 7)	non-coding (NR_109974, exon 1 of 7)	176	NR_002605	10301	Hs.591229	NM_005887	ENSG00000176124	DLEU1	BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1	ncRNA
1.01275	chr20	43017010	43017509	+	0	NA	intron (NR_109949, intron 2 of 3)	intron (NR_109949, intron 2 of 3)	7087	NR_109949	101927219	Hs.655919	NR_109949	ENSG00000229005	HNF4A-AS1	uc002xlx	HNF4A antisense RNA 1	ncRNA
21.3906	chr9	77113220	77113719	+	0	NA	promoter-TSS (NR_125791)	promoter-TSS (NR_125791)	0	NR_125791	103752585	Hs.635501	NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA
7.52027-8	chr9	139022556	139023055	+	0	NA	Intergenic	L2b|LINE|L2	-12074	NM_152833	90120	Hs.287411	NM_152833	ENSG00000238227	C9orf69	-	chromosome 9 open reading frame 69	protein-coding
0.181814-19	chr2	43055945	43056444	+	0	NA	Intergenic	Intergenic	-36443	NM_012205	23498	Hs.368805	NM_012205	ENSG00000162882	HAAO	3-HAO|HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
17.3755-4	chr16	58789921	58790420	+	0	NA	Intergenic	Intergenic	-21909	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
0.501223-14	chrX	118918784	118919283	+	0	NA	Intergenic	Intergenic	2414	NR_002584	26779	Hs.675255	NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
0.0877392-16	chr7	75544091	75544590	+	0	NA	promoter-TSS (NM_000941)	promoter-TSS (NM_000941)	-80	NM_000941	5447	Hs.354056	NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
50.9583	chr6	99104514	99105013	+	0	NA	Intergenic	Intergenic	-177817	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
6.92504-10	chr4	171938635	171939134	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-22869	NR_038838	100506122	Hs.434205	NR_038838	ENSG00000248872	LOC100506122	-	uncharacterized LOC100506122	ncRNA
0.675262-12	chr9	93195223	93195722	+	0	NA	intron (NR_109795, intron 1 of 2)	intron (NR_109795, intron 1 of 2)	299	NR_109795	101927873	Hs.598482	NR_109795	ENSG00000231107	LINC01508	-	long intergenic non-protein coding RNA 1508	ncRNA
12.7409	chr13	48637432	48637931	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-13592	NR_046511	100873965	Hs.616241	NR_046511	ENSG00000229111	MED4-AS1	MED4-AS	MED4 antisense RNA 1	ncRNA
1.53663-3	chr3	119099471	119099970	+	0	NA	intron (NM_020754, intron 3 of 11)	intron (NM_020754, intron 3 of 11)	-58113	NR_046748	100874246	Hs.607097	NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
20.7314-4	chr2	190538983	190539482	+	0	NA	Intergenic	CpG	-1479	NM_144708	150709	Hs.60772	NM_144708	ENSG00000151687	ANKAR	-	ankyrin and armadillo repeat containing	protein-coding
2.71646-5	chr19	55972915	55973414	+	0	NA	promoter-TSS (NM_001136201)	promoter-TSS (NM_001136201)	-115	NM_024710	79763	Hs.467306	NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
15.7675-12	chr6	151432709	151433208	+	0	NA	Intergenic	Intergenic	116634	NR_125868	102723831	Hs.684425	NR_125868		LOC102723831	-	uncharacterized LOC102723831	ncRNA
1.85087-4	chr6	42847304	42847803	+	0	NA	non-coding (NR_134563, exon 1 of 6)	non-coding (NR_134563, exon 1 of 6)	199	NM_198486	285855	Hs.520133	NM_198486	ENSG00000146223	RPL7L1	dJ475N16.4	ribosomal protein L7 like 1	protein-coding
2.44125-17	chr8	97970925	97971424	+	0	NA	intron (NR_125390, intron 2 of 2)	intron (NR_125390, intron 2 of 2)	313719	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
0.0261362-11	chr17	80288162	80288661	+	0	NA	intron (NM_003004, intron 1 of 4)	intron (NM_003004, intron 1 of 4)	3510	NM_003004	6398	Hs.558009	NM_003004	ENSG00000141574	SECTM1	K12	secreted and transmembrane 1	protein-coding
2.19683-14	chr11	118965521	118966020	+	0	NA	exon (NM_002105, exon 1 of 1)	exon (NM_002105, exon 1 of 1)	407	NM_002105	3014	Hs.477879	NM_002105	ENSG00000188486	H2AFX	H2A.X|H2A/X|H2AX	H2A histone family member X	protein-coding
0.264104-11	chr20	55966030	55966529	+	0	NA	promoter-TSS (NM_017495)	promoter-TSS (NM_017495)	-175	NM_183425	55544	Hs.236361	NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
3.24222-8	chr8	100939805	100940304	+	0	NA	Intergenic	SVA_C|Other|Other	-33812	NM_004374	1345	Hs.351875	NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
0.0833099-19	chrUn_gl000225	36831	37330	+	0	NA	NA	CpG	NA	NA								
7.67004-2	chr18	72920113	72920920	+	0	NA	intron (NM_175907, intron 1 of 1)	CpG	787	NM_175907	284273	Hs.465433	NM_175907	ENSG00000180011	ZADH2	PRG-3	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
4.97573-2	chr6	151634083	151634582	+	0	NA	intron (NM_005100, intron 3 of 4)	intron (NM_005100, intron 3 of 4)	-12334	NM_144497	9590	Hs.371240	NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
0.94744-6	chr8	105142214	105142713	+	0	NA	intron (NM_014677, intron 17 of 21)	intron (NM_014677, intron 17 of 21)	-93100	NM_001282882	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
0.624821-22	chr7	45616638	45617137	+	0	NA	intron (NM_021116, intron 1 of 19)	intron (NM_021116, intron 1 of 19)	2762	NM_021116	107	Hs.192215	NM_021116	ENSG00000164742	ADCY1	AC1|DFNB44	adenylate cyclase 1	protein-coding
2.9243-5	chr4	184644231	184644730	+	0	NA	Intergenic	Intergenic	64060	NM_021942	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding
7.47147-3	chr3	23881936	23882435	+	0	NA	intron (NM_001202476, intron 2 of 4)	L1MEc|LINE|L1	30251	NM_001202476	7324	Hs.164853	NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
0.00869459-11	chr12	125389248	125389747	+	0	NA	Intergenic	Intergenic	10090	NM_021009	7316	Hs.520348	NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
12.2113	chr11	61723112	61723611	+	0	NA	non-coding (NR_134580, exon 4 of 11)	non-coding (NR_134580, exon 4 of 11)	6005	NM_001300787	7439	Hs.524910	NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
7.03335-3	chr17	69457545	69458044	+	0	NA	Intergenic	Intergenic	-259474	NR_104152	101928165	Hs.407613	NR_104152	ENSG00000260785	CASC17	LINC00600	cancer susceptibility candidate 17 (non-protein coding)	ncRNA
1.85752-9	chr6	39901957	39902456	+	0	NA	promoter-TSS (NM_001075098)	promoter-TSS (NM_001075098)	84	NM_001075098	4337	Hs.357128	NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCODA	molybdenum cofactor synthesis 1	protein-coding
3.16953-2	chr17	60805069	60805568	+	0	NA	intron (NM_001288780, intron 7 of 10)	intron (NM_001288780, intron 7 of 10)	78696	NM_001100875	162333	Hs.665663	NM_152598	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane associated ring-CH-type finger 10	protein-coding
5.05845-17	chr1	10092698	10093197	+	0	NA	promoter-TSS (NM_001105562)	promoter-TSS (NM_001105562)	-94	NM_006048	10277	Hs.593974	NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
0.199966-7	chr16	81664143	81664642	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	19439	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
3.87216-11	chr2	28789525	28790024	+	0	NA	intron (NR_138141, intron 1 of 35)	CpG	550	NR_138141	151056	Hs.444933	NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
3.85103-8	chr16	25118243	25118742	+	0	NA	intron (NR_120306, intron 1 of 2)	CpG	4384	NR_120306	102723510	Hs.569596	NR_120306		LCMT1-AS1	-	LCMT1 antisense RNA 1	ncRNA
2.07608-17	chr3	47821895	47822394	+	0	NA	intron (NM_003074, intron 1 of 27)	L2a|LINE|L2	1261	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
9.28118-3	chr15	23748782	23749281	+	0	NA	Intergenic	MER61F|LTR|ERV1	-56641	NM_001304388	283685		NM_182561	ENSG00000174450	GOLGA6L2	CT105	golgin A6 family-like 2	protein-coding
1.64944	chr11	7678405	7678904	+	0	NA	Intergenic	Intergenic	15468	NM_001302827	51700	Hs.414362	NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
0.2365-8	chrX	152094723	152095222	+	0	NA	intron (NM_001178109, intron 11 of 21)	intron (NM_001178109, intron 11 of 21)	8563	NM_001178113	7739	Hs.16622	NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 (LIM domain)	protein-coding
3.44862-4	chr22	22067266	22067765	+	0	NA	intron (NR_130910, intron 1 of 4)	L1MB3|LINE|L1	22608	NM_013313	29799	Hs.517436	NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
18.9279-6	chr10	16715442	16715941	+	0	NA	intron (NM_152724, intron 7 of 7)	intron (NM_152724, intron 7 of 7)	143762	NM_012425	6251	Hs.524161	NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
7.37549-11	chr4	184063675	184064174	+	0	NA	intron (NM_024949, intron 1 of 22)	intron (NM_024949, intron 1 of 22)	43461	NM_024949	80014	Hs.333179	NM_024949	ENSG00000151718	WWC2	BOMB	WW and C2 domain containing 2	protein-coding
4.68521-4	chr5	17218799	17219298	+	0	NA	intron (NM_006317, intron 1 of 1)	intron (NM_006317, intron 1 of 1)	1378	NM_006317	10409	Hs.201641	NM_006317	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant membrane attached signal protein 1	protein-coding
28.6967	chr5	133238207	133238706	+	0	NA	Intergenic	Intergenic	-10912	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
5.60667-2	chr2	23203166	23203665	+	0	NA	Intergenic	Intergenic	-404883	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
3.86158-3	chr11	73587672	73588171	+	0	NA	promoter-TSS (NM_001267803)	promoter-TSS (NM_001267803)	-31	NM_016565	51287	Hs.475387	NM_016565	ENSG00000181924	COA4	CHCHD8|CMC3|E2IG2	cytochrome c oxidase assembly factor 4 homolog	protein-coding
0.127808-4	chr17	38497942	38498441	+	0	NA	promoter-TSS (NM_001024809)	promoter-TSS (NM_001024809)	-80	NM_001024809	5914	Hs.654583	NM_000964	ENSG00000131759	RARA	NR1B1|RAR	retinoic acid receptor alpha	protein-coding
7.9588-15	chr4	2979149	2979648	+	0	NA	intron (NM_001004056, intron 1 of 14)	MLT1J1|LTR|ERVL-MaLR	14055	NM_182982	2868	Hs.32959	NM_005307	ENSG00000125388	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
4.89455-2	chr3	34254913	34255412	+	0	NA	Intergenic	Intergenic	415099	NM_001256192	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
0.51587-18	chr16	85608620	85609119	+	0	NA	Intergenic	Intergenic	-36160	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
0.0612309-36	chr4	186225998	186226497	+	0	NA	intron (NM_001317781, intron 6 of 18)	MER20|DNA|hAT-Charlie	73905	NM_018409	55805	Hs.558513	NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
1.02923-8	chr20	4980458	4981319	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	1257	NM_005116	9962	Hs.516866	NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2|hSVCT2	solute carrier family 23 member 2	protein-coding
0.168249-21	chr12	109951591	109952090	+	0	NA	intron (NM_183415, intron 18 of 27)	L3|LINE|CR1	36412	NM_001270450	89910	Hs.374067	NM_130466	ENSG00000151148	UBE3B	BPIDS|KOS	ubiquitin protein ligase E3B	protein-coding
4.64706-5	chr11	92440233	92440732	+	0	NA	intron (NM_001008781, intron 3 of 24)	intron (NM_001008781, intron 3 of 24)	208312	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
9.46922-8	chr6	92362835	92363334	+	0	NA	intron (NR_104154, intron 2 of 3)	intron (NR_104154, intron 2 of 3)	37062	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
2.41088-6	chr1	148928067	148928566	+	0	NA	promoter-TSS (NR_027355)	promoter-TSS (NR_027355)	3	NR_027355	645166	Hs.744183	NR_027354		LOC645166	-	lymphocyte-specific protein 1 pseudogene	pseudo
0.985417	chr1	18029923	18030422	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-51636	NM_030812	81569	Hs.2149	NM_030812	ENSG00000117148	ACTL8	CT57	actin like 8	protein-coding
0.472076-18	chr8	142111123	142111622	+	0	NA	Intergenic	Intergenic	-27348	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
0.788339-13	chr17	30918018	30918517	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	104162	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
0.268721-24	chr22	46498587	46499086	+	0	NA	intron (NR_110479, intron 3 of 4)	intron (NR_110479, intron 3 of 4)	-9793	NR_029478	406883		NR_029478	ENSG00000197182	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
9.20819-2	chr13	103249000	103249499	+	0	NA	promoter-TSS (NM_003291)	promoter-TSS (NM_003291)	-37	NM_003291	7174	Hs.432424	NM_003291	ENSG00000134900	TPP2	TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
1.30768-2	chr6	154553565	154554064	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	97401	NM_001130699	26034	Hs.146100	NM_015553	ENSG00000074706	IPCEF1	PIP3-E	interaction protein for cytohesin exchange factors 1	protein-coding
0.315171-16	chr14	37666918	37667811	+	0	NA	intron (NM_138731, intron 1 of 13)	CpG	246	NM_138731	145282	Hs.660396	NM_138731	ENSG00000151338	MIPOL1	CCDC193	mirror-image polydactyly 1	protein-coding
1.24939-8	chr8	140612967	140613466	+	0	NA	non-coding (NR_104210, exon 4 of 4)	non-coding (NR_104210, exon 4 of 4)	102083	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
21.831	chr11	128414501	128415000	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	18713	NR_120581	101929517	Hs.562320	NR_120581	ENSG00000254588	LOC101929517	-	uncharacterized LOC101929517	ncRNA
0.685421-10	chr9	109494158	109494657	+	0	NA	Intergenic	Intergenic	116068	NR_104145	100996590	Hs.147110	NR_104145	ENSG00000234323	LINC01505	-	long intergenic non-protein coding RNA 1505	ncRNA
15.8838-3	chr2	22045312	22045811	+	0	NA	Intergenic	Intergenic	-112037	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
0.809219-13	chr2	162107343	162107842	+	0	NA	non-coding (NR_110593, exon 2 of 4)	non-coding (NR_110593, exon 2 of 4)	3562	NR_110593	101929512	Hs.666488	NR_110593		LOC101929512	-	uncharacterized LOC101929512	ncRNA
4.23659-5	chr15	67438480	67438979	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	8370	NM_001145103	4088	Hs.727986	NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
1.51195-15	chr22	20199500	20199999	+	0	NA	Intergenic	Intergenic	5894	NR_026919	150197	Hs.635544	NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
4.81486-10	chr7	33932954	33933453	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-11320	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
0.861861-3	chr4	120992368	120992867	+	0	NA	Intergenic	Intergenic	-4604	NM_002358	4085	Hs.591697	NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	MAD2 mitotic arrest deficient-like 1 (yeast)	protein-coding
11.3136-2	chr7	139913702	139914201	+	0	NA	Intergenic	Intergenic	36890	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
0.877779-4	chr15	41522827	41523326	+	0	NA	promoter-TSS (NM_001286441)	promoter-TSS (NM_001286441)	-121	NM_152596	161829	Hs.307999	NM_152596	ENSG00000178997	EXD1	EXDL1	exonuclease 3'-5' domain containing 1	protein-coding
3.57535	chr9	97791099	97791598	+	0	NA	intron (NM_032823, intron 11 of 14)	intron (NM_032823, intron 11 of 14)	-36284	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
0.0612309-37	chr8	28590806	28591305	+	0	NA	intron (NR_073468, intron 2 of 4)	AluJr4|SINE|Alu	32065	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
1.37869-49	chr5	1701444	1701943	+	0	NA	Intergenic	Intergenic	7290	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	ncRNA
1.0902-5	chr11	114951944	114952443	+	0	NA	Intergenic	Intergenic	-252103	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
0.136762-13	chr4	176356495	176356994	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	352083	NM_001261448	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
1.35489-22	chr2	27579213	27580059	+	0	NA	promoter-TSS (NM_001318909)	promoter-TSS (NM_001318909)	265	NM_001035521	2976	Hs.75782	NM_001521	ENSG00000115207	GTF3C2	TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
2.0412-5	chr18	48165021	48165520	+	0	NA	intron (NM_001292039, intron 1 of 4)	MIRb|SINE|MIR	78786	NM_001292040	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
1.18045-20	chr2	206950199	206950698	+	0	NA	intron (NM_017759, intron 1 of 10)	CpG	458	NM_017759	54891	Hs.445036	NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
4.44906-9	chr8	140774718	140775217	+	0	NA	intron (NM_031466, intron 21 of 22)	MamRep434|DNA|TcMar-Tigger	-59668	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
15.1999-6	chr11	61263453	61263952	+	0	NA	Intergenic	Intergenic	-12366	NR_039708	100616470		NR_039708	ENSG00000266006	MIR4488	mir-4488	microRNA 4488	ncRNA
1.18615-2	chr2	167231583	167232082	+	0	NA	intron (NM_002977, intron 1 of 26)	intron (NM_002977, intron 1 of 26)	665	NM_002977	6335	Hs.439145	NM_002977	ENSG00000169432	SCN9A	ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP	sodium voltage-gated channel alpha subunit 9	protein-coding
2.46417-7	chr10	99447020	99447519	+	0	NA	promoter-TSS (NM_021732)	promoter-TSS (NM_021732)	-254	NM_021732	60370	Hs.23918	NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
0.447935-5	chr2	107405587	107406086	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	96633	NR_136313	84620	Hs.98265	NM_032528	ENSG00000144057	ST6GAL2	SIAT2|ST6GalII	ST6 beta-galactoside alpha-2,6-sialyltransferase 2	protein-coding
0.496351-55	chr16	85482486	85482985	+	0	NA	Intergenic	Intergenic	-142804	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
0.0305075-70	chr20	19583229	19583728	+	0	NA	intron (NM_020689, intron 6 of 16)	intron (NM_020689, intron 6 of 16)	-283687	NM_001242581	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
2.98432-11	chr1	223885976	223886475	+	0	NA	Intergenic	Intergenic	-3070	NM_001146068	824	Hs.350899	NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
19.6257-3	chr10	48562741	48563240	+	0	NA	Intergenic	Intergenic	-123852	NM_004962	2662	Hs.2171	NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
14.8017-2	chr17	21189611	21190110	+	0	NA	intron (NM_145109, intron 1 of 11)	intron (NM_145109, intron 1 of 11)	-1488	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
0.560111-7	chr14	36969412	36969911	+	0	NA	intron (NR_138596, intron 1 of 4)	intron (NR_138596, intron 1 of 4)	13329	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
5.62249-12	chr20	34207259	34207758	+	0	NA	exon (NM_001317931, exon 10 of 12)	exon (NM_001317931, exon 10 of 12)	3702	NM_001317931	6676	Hs.123159	NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
1.87087-11	chr10	102791540	102792039	+	0	NA	promoter-TSS (NM_001195263)	promoter-TSS (NM_001195263)	793	NM_030971	81855	Hs.283844	NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3	sideroflexin 3	protein-coding
0.070049-36	chr7	157256625	157257124	+	0	NA	Intergenic	Intergenic	-2051	NR_110157	101927914	Hs.623826	NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
21.9382	chr3	69343710	69344209	+	0	NA	intron (NM_015123, intron 4 of 22)	intron (NM_015123, intron 4 of 22)	91496	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
4.02305-2	chrX	113952334	113952833	+	0	NA	intron (NM_001256760, intron 3 of 6)	AluJb|SINE|Alu	2933	NR_031578	100302153		NR_031578	ENSG00000221710	MIR1298	MIRN1298|hsa-mir-1298	microRNA 1298	ncRNA
1.11259-16	chr16	58879351	58879850	+	0	NA	Intergenic	SVA_D|Other|Other	-111339	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
2.13249-3	chr19	9938165	9938664	+	0	NA	promoter-TSS (NM_001048241)	promoter-TSS (NM_001048241)	-142	NM_001048241	59286	Hs.534477	NM_024292	ENSG00000198258	UBL5	HUB1	ubiquitin like 5	protein-coding
2.8735-10	chr16	89778129	89778628	+	0	NA	non-coding (NR_036480, exon 1 of 4)	non-coding (NR_036480, exon 1 of 4)	114	NR_036480	100128881	Hs.666282	NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
0.48177-10	chrX	128976758	128977257	+	0	NA	intron (NM_001008222, intron 1 of 9)	intron (NM_001008222, intron 1 of 9)	554	NM_001008222	51114	Hs.193566	NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type containing 9	protein-coding
17.2584-3	chr11	57043976	57044475	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-39298	NR_027991	187	Hs.438311	NM_005161	ENSG00000134817	APLNR	AGTRL1|APJ|APJR|HG11	apelin receptor	protein-coding
1.33713-3	chr17	63319085	63319584	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-134325	NR_131984	105827617		NR_131984	ENSG00000263520	CRAT40	-	cervical cancer-associated transcript 40	ncRNA
2.03426-2	chr12	104295500	104295999	+	0	NA	intron (NR_027249, intron 4 of 15)	intron (NR_027249, intron 4 of 15)	28240	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
0.496351-14	chr22	22652376	22652875	+	0	NA	intron (NR_027293, intron 1 of 10)	intron (NR_027293, intron 1 of 10)	162	NR_027293	96610	Hs.449601	NM_080926	ENSG00000236850	BMS1P20	IGL|IGLV|IGLV1	BMS1, ribosome biogenesis factor pseudogene 20	pseudo
4.63442-4	chr13	24370691	24371190	+	0	NA	intron (NM_005932, intron 16 of 18)	intron (NM_005932, intron 16 of 18)	-92088	NM_001014442	542767	Hs.642624	NM_001014442		C1QTNF9B-AS1	PCOTH	C1QTNF9B antisense RNA 1	protein-coding
1.59267-6	chr5	140602668	140603167	+	0	NA	5' UTR (NM_018934, exon 1 of 1)	5' UTR (NM_018934, exon 1 of 1)	1019	NM_018934	56122	Hs.658497	NM_018934	ENSG00000120327	PCDHB14	PCDH-BETA14	protocadherin beta 14	protein-coding
0.414361-10	chr13	39679162	39679661	+	0	NA	Intergenic	Intergenic	66963	NM_001017370	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
5.95166-5	chr3	148110548	148111047	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-304861	NM_009585	185	Hs.477887	NM_000685	ENSG00000144891	AGTR1	AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R	angiotensin II receptor type 1	protein-coding
39.0658	chr5	37886245	37886744	+	0	NA	Intergenic	Intergenic	12967	NM_001278094	100861519	Hs.536820	NM_001278094	ENSG00000248587	GDNF-AS1	GDNFOS	GDNF antisense RNA 1 (head to head)	protein-coding
2.29148-8	chr14	105879020	105879519	+	0	NA	3' UTR (NM_001195082, exon 4 of 4)	3' UTR (NM_001195082, exon 4 of 4)	6807	NR_125384	100507437	Hs.676548	NR_125384	ENSG00000251602	LOC100507437	-	uncharacterized LOC100507437	ncRNA
2.48721	chr16	85470847	85471346	+	0	NA	Intergenic	Intergenic	-131165	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
7.52027-2	chr22	38714179	38714678	+	0	NA	promoter-TSS (NM_001894)	promoter-TSS (NM_001894)	-339	NM_001894	1454	Hs.474833	NM_001894	ENSG00000213923	CSNK1E	CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
1.71985-14	chr2	20412756	20413255	+	0	NA	intron (NM_001006946, intron 2 of 5)	intron (NM_001006946, intron 2 of 5)	11922	NM_002997	6382	Hs.224607	NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
1.51195-2	chr20	44849385	44849884	+	0	NA	intron (NM_021248, intron 4 of 11)	MLT1H2|LTR|ERVL-MaLR	87503	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
1.31356-11	chrUn_gl000225	131748	132247	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
0.259491-5	chr17	60215493	60215992	+	0	NA	Intergenic	CpG	-73099	NM_005121	9969	Hs.282678	NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
4.00117-11	chr11	3400206	3400705	+	0	NA	promoter-TSS (NR_040083)	promoter-TSS (NR_040083)	-3	NR_046381	7748	Hs.386294	NM_007152	ENSG00000005801	ZNF195	HRF1|ZNFP104	zinc finger protein 195	protein-coding
0.0744648-25	chr10	114859237	114859736	+	0	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	54372	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
2.36572-5	chr13	56925081	56925580	+	0	NA	Intergenic	Intergenic	-789722	NM_001130407	729250	Hs.525056	NM_001130407	ENSG00000234278	PRR20E	-	proline rich 20E	protein-coding
0.491485-14	chr15	85553527	85554026	+	0	NA	intron (NM_002605, intron 1 of 21)	intron (NM_002605, intron 1 of 21)	28571	NM_173454	5151	Hs.9333	NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
0.0436481-12	chr5	179159925	179160424	+	0	NA	exon (NM_014757, exon 1 of 5)	exon (NM_014757, exon 1 of 5)	323	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
3.04518-2	chr1	59762285	59762784	+	0	NA	promoter-TSS (NM_001113411)	promoter-TSS (NM_001113411)	-91	NM_001113411	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
3.01899-22	chr17	37309039	37309538	+	0	NA	Intergenic	Intergenic	-1386	NM_020405	57125	Hs.125036	NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
28.1816	chr4	100244777	100245276	+	0	NA	Intergenic	Intergenic	-2427	NM_001286650	125	Hs.4	NM_000668	ENSG00000196616	ADH1B	ADH2|HEL-S-117	alcohol dehydrogenase 1B (class I), beta polypeptide	protein-coding
0.530567-14	chr1	112281071	112281570	+	0	NA	intron (NM_198926, intron 1 of 1)	CpG	726	NM_019099	55924	Hs.193406	NM_019099	ENSG00000197852	FAM212B	C1orf183	family with sequence similarity 212 member B	protein-coding
25.8503	chr21	16930185	16930684	+	0	NA	Intergenic	LTR9|LTR|ERV1	-171910	NM_013396	29761	Hs.743994	NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
1.59894-20	chr7	2652669	2653168	+	0	NA	3' UTR (NM_001287501, exon 20 of 20)	3' UTR (NM_001287501, exon 20 of 20)	-18685	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
8.69666-10	chr14	57969253	57969752	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-8921	NM_001283060	55195	Hs.659706	NM_018168	ENSG00000100557	C14orf105	-	chromosome 14 open reading frame 105	protein-coding
0.25028-13	chr12	30917109	30917938	+	0	NA	intron (NR_135046, intron 1 of 1)	intron (NR_135046, intron 1 of 1)	9515	NR_135046	645485	Hs.232332	NR_135046	ENSG00000246331	LOC645485	-	uncharacterized LOC645485	ncRNA
1.45694-4	chr22	38653735	38654234	+	0	NA	intron (NM_012264, intron 1 of 8)	intron (NM_012264, intron 1 of 8)	14686	NM_001195071	25829	Hs.182626	NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256	transmembrane protein 184B	protein-coding
7.90485-6	chr20	58670441	58671177	+	0	NA	intron (NR_109918, intron 2 of 4)	MLT1K|LTR|ERVL-MaLR	8068	NR_109916	729296	Hs.534781	NR_109916		LOC729296	-	uncharacterized LOC729296	ncRNA
0.0921731-17	chr9	113017729	113018228	+	0	NA	intron (NM_001244938, intron 1 of 3)	CpG	942	NM_003329	7295	Hs.435136	NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1	thioredoxin	protein-coding
3.96856-9	chr18	39535467	39535966	+	0	NA	intron (NM_001308020, intron 1 of 23)	intron (NM_001308020, intron 1 of 23)	553	NM_002647	5289	Hs.464971	NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
4.41291-5	chr9	43133656	43134155	+	0	NA	promoter-TSS (NM_001012421).2	promoter-TSS (NM_001012421).2	-361	NM_001012421	441430	Hs.632663	NM_001012421	ENSG00000183148	ANKRD20A2	-	ankyrin repeat domain 20 family member A2	protein-coding
2.29885-6	chr6	110138636	110139135	+	0	NA	intron (NM_014845, intron 22 of 22)	intron (NM_014845, intron 22 of 22)	-64466	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
1.82435-29	chr3	132254858	132255357	+	0	NA	intron (NM_001329126, intron 56 of 56)	FRAM|SINE|Alu	-60974	NM_016557	51554	Hs.310512	NM_016557	ENSG00000129048	ACKR4	CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
6.79854	chr15	90836525	90837024	+	0	NA	Intergenic	Intergenic	-27783	NR_102428	10519	Hs.715556	NM_006384	ENSG00000185043	CIB1	CIB|CIBP|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
0.409586-2	chr5	10307516	10308015	+	0	NA	5' UTR (NM_138809, exon 1 of 6)	5' UTR (NM_138809, exon 1 of 6)	403	NM_138809	134147	Hs.192586	NM_138809	ENSG00000164237	CMBL	JS-1	carboxymethylenebutenolidase homolog	protein-coding
1.63043-10	chr12	4558869	4559368	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-4338	NM_020996	2251	Hs.166015	NM_020996	ENSG00000111241	FGF6	HBGF-6|HST2	fibroblast growth factor 6	protein-coding
15.3165-3	chr8	25140810	25141309	+	0	NA	intron (NM_024940, intron 5 of 51)	intron (NM_024940, intron 5 of 51)	-61859	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
1.88425-23	chr17	37356059	37356558	+	0	NA	promoter-TSS (NM_000981)	promoter-TSS (NM_000981)	-228	NM_000981	6143	Hs.381061	NM_000981	ENSG00000108298	RPL19	L19	ribosomal protein L19	protein-coding
0.268721-42	chr17	16944402	16944901	+	0	NA	Intergenic	L2a|LINE|L2	-1423	NM_015134	23164	Hs.462341	NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
0.680339-22	chr2	128158806	128159305	+	0	NA	Intergenic	MIRb|SINE|MIR	-16941	NM_000312	5624	Hs.224698	NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
0.0744648-15	chr6	138550858	138551357	+	0	NA	intron (NM_020340, intron 5 of 33)	intron (NM_020340, intron 5 of 33)	-11480	NM_021635	59351	Hs.302016	NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
3.19664-6	chr6	16158121	16158620	+	0	NA	Intergenic	Intergenic	16583	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
0.555173-2	chr5	1868954	1869453	+	0	NA	Intergenic	Intergenic	-12521	NR_104602	101929034	Hs.128032	NR_104602	ENSG00000250417	LINC02116	-	long intergenic non-protein coding RNA 2116	ncRNA
0.0833099-36	chr8	131314613	131315112	+	0	NA	intron (NM_001247996, intron 4 of 30)	intron (NM_001247996, intron 4 of 30)	-6083	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
5.14279-7	chr3	79647842	79648341	+	0	NA	intron (NM_002941, intron 1 of 30)	L1PBa|LINE|L1	91054	NR_037488	100500877		NR_037488	ENSG00000265193	MIR3923	-	microRNA 3923	ncRNA
8.09668-9	chr3	169478202	169478701	+	0	NA	Intergenic	MER77B|LTR|ERVL	4397	NR_001566	7012	Hs.436182	NR_001566	ENSG00000270141	TERC	DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR	telomerase RNA component	ncRNA
0.338583-37	chr1	161427690	161428189	+	0	NA	Intergenic	CpG	-47266	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
0.268721-23	chr10	182907	183406	+	0	NA	intron (NM_001202464, intron 1 of 13)	intron (NM_001202464, intron 1 of 13)	1732	NM_001202464	10771	Hs.292265	NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
5.25784-16	chr3	130466296	130466795	+	0	NA	promoter-TSS (NM_014602)	promoter-TSS (NM_014602)	-849	NM_014602	30849	Hs.149032	NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
0.227338-28	chr6	136669180	136669679	+	0	NA	intron (NM_001198618, intron 16 of 17)	MamRep1527|LTR|LTR	-58440	NM_001077440	9774	Hs.486542	NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
2.24026-8	chr15	34635034	34635533	+	0	NA	promoter-TSS (NM_001284292)	promoter-TSS (NM_001284292)	79	NM_018648	55505	Hs.14317	NM_018648	ENSG00000182117	NOP10	DKCB1|NOLA3|NOP10P	NOP10 ribonucleoprotein	protein-coding
13.6552-3	chr8	140254850	140255349	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-328850	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
6.8403-7	chr17	16931386	16932372	+	0	NA	Intergenic	Intergenic	-14195	NM_015134	23164	Hs.462341	NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
0.535477-16	chr1	175098870	175099369	+	0	NA	intron (NM_022093, intron 15 of 18)	intron (NM_022093, intron 15 of 18)	62125	NM_022093	63923	Hs.156369	NM_022093	ENSG00000120332	TNN	TN-W	tenascin N	protein-coding
11.2436-2	chr13	112282679	112283178	+	0	NA	intron (NR_135814, intron 1 of 1)	intron (NR_135814, intron 1 of 1)	34572	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
0.996329-21	chr12	103790922	103791421	+	0	NA	intron (NM_001099336, intron 3 of 5)	MER1B|DNA|hAT-Charlie	98617	NM_001278419	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
1.43271-20	chr12	102270753	102271252	+	0	NA	promoter-TSS (NM_018370)	promoter-TSS (NM_018370)	-103	NM_018370	55332	Hs.525634	NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
0.958256-5	chr5	1235410	1235909	+	0	NA	exon (NM_182632, exon 4 of 12)	exon (NM_182632, exon 4 of 12)	10189	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
1.2436-9	chr22	42665554	42666053	+	0	NA	promoter-TSS (NR_036498)	promoter-TSS (NR_036498)	44	NR_036498	388906	Hs.730075	NR_036498	ENSG00000182057	OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
0.296531-16	chr16	82215029	82215528	+	0	NA	Intergenic	MIR|SINE|MIR	-11449	NM_005792	10200	Hs.344400	NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
0.496351-53	chr19	39342293	39342792	+	0	NA	intron (NM_001005335, intron 1 of 12)	CpG-13673	437	NM_001005335	3191	Hs.644906	NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
10.5012-4	chr2	174529664	174530163	+	0	NA	Intergenic	Intergenic	299034	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
2.1467	chr6	119763793	119764292	+	0	NA	Intergenic	Intergenic	48425	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
15.1428-3	chr5	2239979	2240478	+	0	NA	Intergenic	Intergenic	72087	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
3.29754-19	chr6	49893688	49894187	+	0	NA	Intergenic	Intergenic	23220	NM_001166478	403339	Hs.558270	NM_001166478	ENSG00000214643	DEFB133	-	defensin beta 133	protein-coding
0.555173	chr11	88070621	88071120	+	0	NA	promoter-TSS (NM_001814)	promoter-TSS (NM_001814)	85	NM_001814	1075	Hs.128065	NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
2.66803-2	chr2	219193926	219194425	+	0	NA	intron (NR_125777, intron 2 of 3)	intron (NR_125777, intron 2 of 3)	6273	NM_022572	25953	Hs.98475	NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2	paroxysmal nonkinesigenic dyskinesia	protein-coding
0.76756-19	chr22	50969811	50970310	+	0	NA	exon (NM_001014440, exon 3 of 7)	exon (NM_001014440, exon 3 of 7)	948	NM_001014440	440836	Hs.531314	NM_001014440	ENSG00000177989	ODF3B	ODF3L3	outer dense fiber of sperm tails 3B	protein-coding
0.665127-5	chrX	38662437	38663363	+	0	NA	5' UTR (NM_021242, exon 2 of 3)	5' UTR (NM_021242, exon 2 of 3)	236	NR_046706	100874211	Hs.662789	NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
5.21434-3	chr1	156554539	156555038	+	0	NA	intron (NM_001105669, intron 6 of 9)	intron (NM_001105669, intron 6 of 9)	3631	NM_001105669	164118	Hs.447851	NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
0.93665-10	chr2	118943292	118943791	+	0	NA	intron (NR_144530, intron 1 of 2)	intron (NR_144530, intron 1 of 2)	421	NR_144530	100506797	Hs.116176	NR_144530		LOC100506797	-	uncharacterized LOC100506797	ncRNA
4.30626-9	chr11	88687668	88688167	+	0	NA	intron (NM_000842, intron 2 of 8)	intron (NM_000842, intron 2 of 8)	93323	NM_001143831	2915	Hs.147361	NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
0.245682-7	chr7	141615303	141615802	+	0	NA	Intergenic	Intergenic	-3124	NM_001001656	130075	Hs.690171	NM_001001656	ENSG00000258083	OR9A4	-	olfactory receptor family 9 subfamily A member 4	protein-coding
0.48177-12	chr17	64344633	64345132	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	45956	NM_002737	5578	Hs.531704	NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PRKACA	protein kinase C alpha	protein-coding
66.5758-2	chr5	53965979	53966478	+	0	NA	intron (NR_104658, intron 1 of 2)	LTR88a|LTR|Gypsy?	32924	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
12.0412	chr8	6405027	6405526	+	0	NA	intron (NM_001118887, intron 1 of 8)	intron (NM_001118887, intron 1 of 8)	15508	NM_001118888	285	Hs.583870	NM_001147	ENSG00000091879	ANGPT2	AGPT2|ANG2	angiopoietin 2	protein-coding
3.93619-16	chr6	96008890	96009389	+	0	NA	intron (NR_104136, intron 2 of 2)	LTR5_Hs|LTR|ERVK	16188	NR_104136	101927288	Hs.616643	NR_047502	ENSG00000261366	MANEA-AS1	-	MANEA antisense RNA 1 (head to head)	ncRNA
0.414361	chr7	102714837	102716104	+	0	NA	promoter-TSS (NM_145032)	promoter-TSS (NM_145032)	142	NM_001161011	83787	Hs.287412	NM_031905	ENSG00000170632	ARMC10	PNAS-112|PNAS112|PSEC0198|SVH	armadillo repeat containing 10	protein-coding
0.277972-7	chr7	30721424	30721923	+	0	NA	intron (NM_001202475, intron 2 of 12)	CpG-24189	468	NM_001202482	1395	Hs.546246	NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
12.5964-7	chr17	60969017	60969516	+	0	NA	Intergenic	Intergenic	-52310	NR_030363	693218		NR_030363	ENSG00000207552	MIR633	MIRN633|hsa-mir-633	microRNA 633	ncRNA
4.28291-7	chr4	116066441	116066940	+	0	NA	Intergenic	Intergenic	-31658	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding
4.88117-2	chr5	997122	997621	+	0	NA	promoter-TSS (NR_104614)	promoter-TSS (NR_104614)	84	NR_104615	100506688	Hs.532063	NM_001242737	ENSG00000215246	LOC100506688	-	uncharacterized LOC100506688	ncRNA
0.381045	chr22	44207958	44208457	+	0	NA	promoter-TSS (NM_022785)	promoter-TSS (NM_022785)	10	NM_022785	64800	Hs.658996	NM_022785	ENSG00000186976	EFCAB6	DJBP|HSCBCIP1|dJ185D5.1	EF-hand calcium binding domain 6	protein-coding
26.4589	chr1	236081298	236081797	+	0	NA	Intergenic	Intergenic	-34539	NR_102436	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
9.78811	chr18	77793713	77794685	+	0	NA	promoter-TSS (NM_001305564)	promoter-TSS (NM_001305564)	-147	NM_024805	79863	Hs.728931	NM_024805	ENSG00000101546	RBFA	C18orf22|HsT169	ribosome binding factor A (putative)	protein-coding
19.6658-4	chr7	75843553	75844052	+	0	NA	intron (NM_001291831, intron 1 of 16)	intron (NM_001291831, intron 1 of 16)	12591	NM_001110199	222183	Hs.511025	NM_001039212	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
2.71646-6	chr8	1926050	1926549	+	0	NA	intron (NM_014867, intron 1 of 1)	L1PA10|LINE|L1	4255	NM_014867	9920	Hs.5333	NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
2.8567-5	chr6	118228720	118229702	+	0	NA	intron (NM_001029858, intron 1 of 7)	CpG	522	NM_001029858	222553	Hs.654841	NM_001029858	ENSG00000196376	SLC35F1	C6orf169|dJ230I3.1	solute carrier family 35 member F1	protein-coding
3.22393-22	chr20	5549623	5550122	+	0	NA	intron (NM_019593, intron 12 of 19)	intron (NM_019593, intron 12 of 19)	41800	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
6.81937-6	chr2	193759203	193759702	+	0	NA	Intergenic	SVA_B|Other|Other	144881	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
3.30683-4	chr14	46167619	46168118	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-365494	NR_102702	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
19.5861-8	chr8	41685813	41686312	+	0	NA	intron (NM_001142446, intron 1 of 42)	CpG	-30922	NM_020475	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
1.37869-33	chr16	4714860	4715359	+	0	NA	exon (NM_015246, exon 7 of 17)	exon (NM_015246, exon 7 of 17)	-6210	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
17.6195-6	chr7	47223676	47224175	+	0	NA	Intergenic	L1ME3D|LINE|L1	397817	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
0.680339-7	chr10	102825853	102826352	+	0	NA	promoter-TSS (NR_135068)	promoter-TSS (NR_135068)	46	NR_135068	81621	Hs.534859	NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
0.287242	chr15	89973829	89974328	+	0	NA	Intergenic	CpG	52805	NR_015411	254559	Hs.136313	NR_015411	ENSG00000255571	MIR9-3HG	LINC00925	MIR9-3 host gene	ncRNA
1.77178-11	chr6	91530141	91530640	+	0	NA	Intergenic	Intergenic	-233370	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
0.624821-2	chr10	61047438	61047937	+	0	NA	intron (NM_001347846, intron 6 of 13)	MIR3|SINE|MIR	74665	NM_001166698	220965	Hs.607594	NM_198215	ENSG00000148541	FAM13C	FAM13C1	family with sequence similarity 13 member C	protein-coding
6.42065-2	chr1	206808525	206809024	+	0	NA	promoter-TSS (NM_003582)	promoter-TSS (NM_003582)	-107	NM_001004023	8444	Hs.164267	NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
5.11449-5	chr18	74513899	74514398	+	0	NA	intron (NR_040024, intron 2 of 2)	CpG	20103	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	ncRNA
8.60121-10	chr8	76319070	76319569	+	0	NA	promoter-TSS (NM_001330561)	promoter-TSS (NM_001330561)	-586	NM_001330561	3174	Hs.241529	NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	hepatocyte nuclear factor 4 gamma	protein-coding
25.544-4	chr8	126591614	126592113	+	0	NA	Intergenic	Intergenic	147412	NM_001282985	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
2.1254-16	chr9	36870849	36871348	+	0	NA	intron (NM_001280549, intron 6 of 7)	intron (NM_001280549, intron 6 of 7)	-6793	NR_039766	100616278		NR_039766	ENSG00000264922	MIR4540	-	microRNA 4540	ncRNA
0.639892-7	chr18	57181336	57181835	+	0	NA	intron (NM_133459, intron 2 of 10)	intron (NM_133459, intron 2 of 10)	-155077	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
5.08638-6	chr2	152953789	152954288	+	0	NA	intron (NM_001145798, intron 2 of 12)	intron (NM_001145798, intron 2 of 12)	1365	NM_001330113	785	Hs.120725	NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
7.09965-4	chr4	35066776	35067275	+	0	NA	Intergenic	MamRep605|Unknown|Unknown	-1025510	NR_125902	101928622	Hs.631687	NR_125902	ENSG00000250954	LOC101928622	-	uncharacterized LOC101928622	ncRNA
4.68521-2	chrX	9982353	9982852	+	0	NA	Intergenic	CpG	-1193	NM_015691	55841	Hs.527524	NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
1.73925-5	chr1	93912694	93913193	+	0	NA	promoter-TSS (NM_001164473)	promoter-TSS (NM_001164473)	-745	NM_001164473	54874	Hs.134060	NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
2.9243-4	chr6	159075492	159075991	+	0	NA	intron (NM_001242395, intron 2 of 15)	MIR|SINE|MIR	4695	NM_001009991	94120	Hs.436977	NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
0.510982-8	chr7	70095963	70096462	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-501311	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
4.52225-12	chr10	126218627	126219126	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	68535	NM_001167880	64077	Hs.527748	NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
0.0877392-46	chr13	25592734	25593233	+	0	NA	Intergenic	CpG	-50376	NR_026730	646405	Hs.620592	NM_001126062		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
1.59894-15	chr12	6387763	6388262	+	0	NA	Intergenic	CpG	-31590	NM_018173	55200	Hs.631660	NM_018173	ENSG00000008323	PLEKHG6	MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
1.37272-9	chr2	239007042	239007541	+	0	NA	non-coding (NR_037904, exon 19 of 19)	non-coding (NR_037904, exon 19 of 19)	-1660	NM_194312	339768	Hs.127724	NM_194312	ENSG00000144488	ESPNL	-	espin-like	protein-coding
1.53045-18	chr4	83349899	83350398	+	0	NA	intron (NM_001207000, intron 1 of 6)	CpG	1230	NR_003249	9987	Hs.527105	NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
2.57275-11	chr2	109403083	109403582	+	0	NA	exon (NM_144978, exon 1 of 15)	exon (NM_144978, exon 1 of 15)	126	NR_130121	165055	Hs.362702	NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
0.0833099-15	chr3	174867417	174867916	+	0	NA	intron (NM_207015, intron 2 of 13)	intron (NM_207015, intron 2 of 13)	-34634	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
4.90797-4	chr5	22250632	22251131	+	0	NA	intron (NM_004061, intron 3 of 14)	L2|LINE|L2	-36972	NM_001317228	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
3.40084-25	chr11	122932043	122932542	+	0	NA	intron (NM_153201, intron 1 of 7)	CpG	751	NM_153201	3312	Hs.180414	NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
0.0261362-48	chr5	35617698	35618197	+	0	NA	promoter-TSS (NM_144722)	promoter-TSS (NM_144722)	-42	NM_024867	79925	Hs.298863	NM_024867	ENSG00000152582	SPEF2	CT122|KPL2	sperm flagellar 2	protein-coding
4.20216-6	chr5	38465515	38466014	+	0	NA	TTS (NM_182798)	TTS (NM_182798)	20186	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
23.5853-2	chr2	18432563	18433062	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	309147	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
0.809219-24	chrX	48755539	48756038	+	0	NA	promoter-TSS (NM_001167992)	promoter-TSS (NM_001167992)	13	NM_001167992	10084	Hs.534384	NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
2.34331-3	chr8	127748229	127748728	+	0	NA	Intergenic	MIRb|SINE|MIR	-177767	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding
0.798767-24	chr21	29073270	29073769	+	0	NA	Intergenic	Intergenic	-21179	NR_024357	54088	Hs.570434	NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113	long intergenic non-protein coding RNA 113	ncRNA
0.2365-17	chr4	119321389	119321888	+	0	NA	Intergenic	Intergenic	-47716	NM_003619	8492	Hs.445857	NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine 12	protein-coding
0.231917-42	chr7	68235612	68236111	+	0	NA	Intergenic	Intergenic	750621	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
1.2436-12	chr8	81077309	81077808	+	0	NA	intron (NR_105035, intron 1 of 6)	L1MC|LINE|L1	5877	NR_105036	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
4.54693	chr14	93260342	93260841	+	0	NA	promoter-TSS (NM_005113)	promoter-TSS (NM_005113)	15	NM_005113	9950	Hs.104320	NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
0.491485-23	chr14	45553049	45553548	+	0	NA	promoter-TSS (NM_017922)	promoter-TSS (NM_017922)	-4	NM_017922	55015	Hs.274337	NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
0.376307-6	chr16	82672778	82673277	+	0	NA	exon (NM_001220488, exon 2 of 15)	exon (NM_001220488, exon 2 of 15)	12628	NM_001220491	1012	Hs.654386	NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
5.68636	chr7	138044586	138045085	+	0	NA	Intergenic	LTR56|LTR|ERV1	-100244	NM_015905	8805	Hs.490287	NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
4.89455-11	chr5	41835702	41836201	+	0	NA	intron (NM_000436, intron 7 of 16)	intron (NM_000436, intron 7 of 16)	-34181	NR_046635	100874002	Hs.375537	NR_046635	ENSG00000248668	OXCT1-AS1	-	OXCT1 antisense RNA 1	ncRNA
7.56962-4	chr7	127422995	127423494	+	0	NA	intron (NM_014390, intron 10 of 23)	intron (NM_014390, intron 10 of 23)	131201	NM_014390	27044	Hs.122523	NM_014390	ENSG00000197157	SND1	TDRD11|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
1.82435-6	chr22	39541579	39542078	+	0	NA	intron (NM_175709, intron 2 of 5)	CpG	6827	NM_175709	23492	Hs.356416	NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
5.80044-14	chr2	96675571	96676070	+	0	NA	promoter-TSS (NR_003698)	promoter-TSS (NR_003698)	-479	NR_003698	729234	Hs.720108	NR_003698	ENSG00000231584	FAHD2CP	-	fumarylacetoacetate hydrolase domain containing 2C, pseudogene	pseudo
3.03644-11	chr18	53967413	53967912	+	0	NA	Intergenic	Intergenic	-162895	NR_040025	100505474	Hs.662191	NR_040025	ENSG00000267712	LINC01539	-	long intergenic non-protein coding RNA 1539	ncRNA
0.296531-97	chr4	79089076	79089575	+	0	NA	intron (NM_001166133, intron 2 of 41)	intron (NM_001166133, intron 2 of 41)	110601	NM_001166133	80144	Hs.369448	NM_020875	ENSG00000138759	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
3.87216-5	chr17	49029303	49029802	+	0	NA	Intergenic	Intergenic	-84213	NM_001243877	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
0.101054-32	chr9	131625838	131626337	+	0	NA	intron (NM_001287390, intron 1 of 14)	intron (NM_001287390, intron 1 of 14)	18267	NM_001122671	883	Hs.495250	NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
0.282604-15	chr18	74580452	74580951	+	0	NA	exon (NM_007345, exon 4 of 31)	exon (NM_007345, exon 4 of 31)	44585	NM_007345	7776	Hs.719137	NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
9.95679	chr8	86089248	86089747	+	0	NA	promoter-TSS (NR_134311)	promoter-TSS (NR_134311)	-122	NM_001951	1875	Hs.445758	NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
2.94992-4	chr9	112719292	112719791	+	0	NA	intron (NM_147150, intron 6 of 9)	intron (NM_147150, intron 6 of 9)	-91337	NM_001004065	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding
10.3953	chr16	364755	365254	+	0	NA	intron (NM_003502, intron 2 of 10)	intron (NM_003502, intron 2 of 10)	31886	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
7.01147-7	chrX	34099392	34099891	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	50806	NM_203408	158724	Hs.143268	NM_203408	ENSG00000185448	FAM47A	-	family with sequence similarity 47 member A	protein-coding
14.3771-10	chr17	21902752	21903251	+	0	NA	Intergenic	SST1|Satellite|centr	-1061	NR_027084	284124	Hs.310247	NR_027084	ENSG00000276399	FLJ36000	-	uncharacterized FLJ36000	ncRNA
0.291884-7	chr17	73029741	73030240	+	0	NA	intron (NR_110835, intron 1 of 7)	intron (NR_110835, intron 1 of 7)	1328	NR_110835	23510	Hs.514468	NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
13.4199-8	chr18	54540916	54541415	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	198185	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
0.00869459-19	chrX	69307684	69308183	+	0	NA	Intergenic	Intergenic	25592	NM_207320	139562	Hs.447381	NM_207320	ENSG00000189401	OTUD6A	DUBA2|HSHIN6	OTU deubiquitinase 6A	protein-coding
2.74905-7	chr8	103818364	103818863	+	0	NA	Intergenic	Intergenic	57815	NM_001301668	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	AZI|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
0.79355	chr3	49449372	49449871	+	0	NA	promoter-TSS (NM_022171)	promoter-TSS (NM_022171)	-18	NM_022171	6988	Hs.517962	NM_022171	ENSG00000145022	TCTA	-	T-cell leukemia translocation altered	protein-coding
6.57577-2	chr19	36231432	36231931	+	0	NA	intron (NR_144338, intron 2 of 4)	CpG-13529	1670	NR_144340	79713	Hs.352548	NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
1.17475-22	chr5	14155581	14156080	+	0	NA	intron (NM_007118, intron 1 of 56)	L1MC4|LINE|L1	12019	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
4.63442-6	chr15	75952515	75953014	+	0	NA	Intergenic	Intergenic	11416	NM_001318146	257364	Hs.8705	NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
8.23909-9	chr18	158056	158555	+	0	NA	promoter-TSS (NM_005151)	promoter-TSS (NM_005151)	-178	NM_001037334	9097	Hs.464416	NM_005151	ENSG00000101557	USP14	TGT	ubiquitin specific peptidase 14	protein-coding
29.393-4	chr22	40401320	40401819	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	10616	NM_138435	113828	Hs.197680	NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
10.0745	chr11	15589978	15590477	+	0	NA	Intergenic	Intergenic	-75204	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
4.41291-3	chr9	312881	313380	+	0	NA	intron (NM_001193536, intron 5 of 46)	L4|LINE|RTE	40082	NM_001190458	81704	Hs.132599	NM_203447	ENSG00000107099	DOCK8	HEL-205|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
2.54925-4	chr15	30852224	30852723	+	0	NA	Intergenic	Intergenic	-12285	NR_026858	89838	Hs.574255	NR_026858	ENSG00000261279	ULK4P1	D-X|FAM7A1	ULK4 pseudogene 1	pseudo
0.0261362-39	chr13	39611613	39612112	+	0	NA	promoter-TSS (NM_001012754)	promoter-TSS (NM_001012754)	351	NM_025138	80209	Hs.318526	NM_025138	ENSG00000120685	PROSER1	C13orf23	proline and serine rich 1	protein-coding
6.8403-10	chr1	165811959	165812458	+	0	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	15476	NM_012474	7371	Hs.458360	NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
2.24026-20	chr15	100026623	100027122	+	0	NA	Intergenic	Intergenic	-79261	NM_001171894	4205	Hs.268675	NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
2.66803-10	chr6	18585299	18585798	+	0	NA	Intergenic	Intergenic	13533	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
3.76751-3	chr18	46729696	46730195	+	0	NA	intron (NM_017653, intron 13 of 16)	SVA_F|Other|Other	-153807	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
0.0305075-17	chr1	143250902	143251401	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-48912	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
0.736576-25	chr10	8095289	8095788	+	0	NA	promoter-TSS (NR_024256)	promoter-TSS (NR_024256)	-91	NR_024256	399717	Hs.158992	NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
8.69666-5	chr5	101919464	101919963	+	0	NA	intron (NR_047462, intron 1 of 1)	intron (NR_047462, intron 1 of 1)	2641	NR_047462	100861468	Hs.519483	NR_047462	ENSG00000250958	LINC00492	-	long intergenic non-protein coding RNA 492	ncRNA
0.700704-3	chr9	128651356	128651855	+	0	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	141127	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
0.195421-28	chr8	73180297	73180796	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-16677	NR_033867	392232	Hs.454043	NR_033867		LOC392232	-	transient receptor potential cation channel subfamily A member 1 pseudogene	pseudo
0.716041-13	chr9	133326820	133327319	+	0	NA	intron (NM_000050, intron 2 of 15)	MIRb|SINE|MIR	6975	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
11.5864	chr7	25399148	25399647	+	0	NA	Intergenic	Intergenic	-131292	NM_022150	64111	Hs.60473	NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
1.51195-11	chr8	22298208	22298707	+	0	NA	promoter-TSS (NM_001243974)	promoter-TSS (NM_001243974)	-26	NM_001243975	5533	Hs.731683	NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
1.73277-23	chr19	6373275	6373774	+	0	NA	intron (NM_032306, intron 1 of 3)	CpG	1080	NM_032306	84266	Hs.111099	NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
1.61151-4	chr7	33434891	33435390	+	0	NA	intron (NM_001033604, intron 18 of 21)	intron (NM_001033604, intron 18 of 21)	265988	NM_014451	27241	Hs.372360	NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
17.9588-7	chrX	152682181	152682680	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-1351	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
10.575-3	chr7	141931487	141931986	+	0	NA	Intergenic	LTR1B|LTR|ERV1	15150	NR_024346	100289017	Hs.641504	NR_024346	ENSG00000240268	MOXD2P	MOXD2	monooxygenase, DBH-like 2, pseudogene	pseudo
0.94744-18	chr12	86690	87189	+	0	NA	intron (NR_130745, intron 2 of 10)	intron (NR_130745, intron 2 of 10)	13214	NR_130745	100288778	Hs.459573	NR_130745	ENSG00000226210	LOC100288778	-	WAS protein family homolog 1 pseudogene	pseudo
1.27844-12	chr1	25830162	25830661	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-39665	NM_015627	26119	Hs.590911	NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding
2.26214-12	chr15	75797335	75797834	+	0	NA	intron (NM_002833, intron 7 of 12)	SVA_D|Other|Other	-49460	NM_001145357	25942	Hs.513039	NM_015477	ENSG00000169375	SIN3A	WITKOS	SIN3 transcription regulator family member A	protein-coding
3.75718-7	chr2	207096246	207096745	+	0	NA	intron (NR_104359, intron 1 of 5)	intron (NR_104359, intron 1 of 5)	-13724	NM_001261453	2825	Hs.184907	NM_005279	ENSG00000183671	GPR1	-	G protein-coupled receptor 1	protein-coding
3.49692-7	chr14	93285365	93285864	+	0	NA	intron (NM_005113, intron 7 of 12)	L2c|LINE|L2	25038	NM_005113	9950	Hs.104320	NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
0.245682-6	chr10	103874657	103875156	+	0	NA	promoter-TSS (NM_003893)	promoter-TSS (NM_003893)	-183	NM_003893	8861	Hs.454418	NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
0.400052-16	chr11	129149486	129149985	+	0	NA	Intergenic	CpG	-87642	NM_001142685	9743	Hs.440379	NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
11.4388	chr14	69560506	69561005	+	0	NA	intron (NM_001284206, intron 5 of 8)	intron (NM_001284206, intron 5 of 8)	58561	NM_001284207	8816	Hs.509780	NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
5.8838-8	chr21	15538933	15539432	+	0	NA	intron (NM_001303001, intron 4 of 7)	L1PA3|LINE|L1	40088	NM_198996	149998	Hs.139907	NM_145317	ENSG00000188992	LIPI	CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta	lipase I	protein-coding
4.59671-4	chr2	97622994	97623493	+	0	NA	intron (NM_001122646, intron 6 of 16)	intron (NM_001122646, intron 6 of 16)	29058	NM_001122646	51252	Hs.107922	NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
1.4752-10	chr2	44706498	44706997	+	0	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	117704	NM_024766	79823	Hs.468349	NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
0.268721-10	chr7	41982580	41983079	+	0	NA	Intergenic	Intergenic	-240123	NM_002192	3624	Hs.28792	NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin beta A subunit	protein-coding
0.310503-30	chr5	106209175	106209674	+	0	NA	intron (NR_104671, intron 2 of 3)	LTR18A|LTR|ERVL	137291	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
2.18963-2	chr1	67895928	67896925	+	0	NA	promoter-TSS (NM_015640)	promoter-TSS (NM_015640)	-303	NM_001018067	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
3.29754	chr3	128735164	128735663	+	0	NA	intron (NM_024768, intron 2 of 7)	intron (NM_024768, intron 2 of 7)	14941	NM_024768	79825	Hs.134807	NM_024768	ENSG00000114654	EFCC1	C3orf73|CCDC48	EF-hand and coiled-coil domain containing 1	protein-coding
1.33713-4	chr7	149322469	149322968	+	0	NA	promoter-TSS (NR_027788)	promoter-TSS (NR_027788)	-837	NR_027789	79970	Hs.520785	NM_024910	ENSG00000133624	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
11.0073-3	chr2	85673935	85674434	+	0	NA	Intergenic	Intergenic	28130	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
5.78396-4	chr2	172756997	172757496	+	0	NA	Intergenic	SVA_D|Other|Other	-6430	NR_047549	8604	Hs.470608	NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|EIEE39	solute carrier family 25 member 12	protein-coding
0.888424-4	chr2	178128064	178128563	+	0	NA	5' UTR (NM_001313904, exon 1 of 5)	5' UTR (NM_001313904, exon 1 of 5)	546	NM_001313901	4780	Hs.744006	NM_006164	ENSG00000116044	NFE2L2	HEBP1|NRF2	nuclear factor, erythroid 2 like 2	protein-coding
20.4964-7	chr12	72967922	72968421	+	0	NA	intron (NM_013381, intron 10 of 18)	intron (NM_013381, intron 10 of 18)	-300882	NR_026836	283392	Hs.363603	NM_001025457	ENSG00000236333	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
0.777937-4	chr7	158239990	158240489	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	85266	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
0.0833099-23	chr5	179718982	179719481	+	0	NA	promoter-TSS (NM_139070)	promoter-TSS (NM_139070)	-160	NM_001135044	5601	Hs.484371	NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
0.496351-21	chr20	47973076	47973575	+	0	NA	Intergenic	Intergenic	76105	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
0.105502-15	chr22	20144426	20144925	+	0	NA	Intergenic	Intergenic	-7244	NM_001243537	388849	Hs.454905	NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
1.36677-21	chr22	50587312	50587811	+	0	NA	intron (NM_001164106, intron 1 of 8)	intron (NM_001164106, intron 1 of 8)	2077	NM_001164106	54456	Hs.62880	NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	Mov10 RISC complex RNA helicase like 1	protein-coding
1.00179-9	chr16	46966670	46967169	+	0	NA	Intergenic	Intergenic	40706	NM_005880	10294	Hs.368078	NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
0.145735-29	chr15	92092686	92093185	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	86366	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
1.04577-5	chr2	216745611	216746110	+	0	NA	Intergenic	LTR85c|LTR|Gypsy?	-37601	NR_037195	646324	Hs.655713	NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
0.385789-15	chr13	31038527	31039026	+	0	NA	promoter-TSS (NM_001313892)	promoter-TSS (NM_001313892)	-312	NM_001313892	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
0.893756-4	chr12	52702088	52702587	+	0	NA	exon (NM_001320198, exon 11 of 11)	exon (NM_001320198, exon 11 of 11)	12845	NM_002282	3889	Hs.720768	NM_002282	ENSG00000170523	KRT83	HB3|Hb-3|KRTHB3	keratin 83	protein-coding
11.2436-3	chr11	20509812	20510311	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	100985	NM_001145167	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
1.50581-3	chr6	31670719	31671218	+	0	NA	promoter-TSS (NM_001177515).2	promoter-TSS (NM_001177515).2	-118	NR_033488	7920	Hs.388188	NM_021160	ENSG00000204427	ABHD16A	BAT5|D6S82E|NG26|PP199	abhydrolase domain containing 16A	protein-coding
2.89883-4	chr11	27461605	27462104	+	0	NA	intron (NM_018490, intron 1 of 17)	intron (NM_018490, intron 1 of 17)	-31424	NR_131170	105376671	Hs.568999	NR_131169	ENSG00000254862	LOC105376671	lnc-BBOX1-1	uncharacterized LOC105376671	ncRNA
1.02923-5	chr2	70844579	70845078	+	0	NA	Intergenic	Intergenic	-63681	NM_001099691	7039	Hs.170009	NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
13.4104-2	chr2	48812852	48813351	+	0	NA	intron (NM_001198594, intron 1 of 7)	intron (NM_001198594, intron 1 of 7)	5375	NM_001198594	286749	Hs.732016	NM_172311	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
3.41989-6	chr11	128603488	128603987	+	0	NA	intron (NM_002017, intron 1 of 8)	intron (NM_002017, intron 1 of 8)	-37819	NR_038908	100507392	Hs.657715	NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA	ncRNA
0.680339-27	chr15	31557981	31558480	+	0	NA	Intergenic	Intergenic	-35176	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
1.19758-13	chr7	45026238	45026737	+	0	NA	promoter-TSS (NR_003697)	promoter-TSS (NR_003697)	-228	NR_003697	285958	Hs.25892	NR_003697	ENSG00000232956	SNHG15	C7orf40|Linc-Myo1g|MYO1GUT	small nucleolar RNA host gene 15	ncRNA
3.41989-5	chr15	102506080	102506579	+	0	NA	non-coding (NR_003659, exon 2 of 11)	non-coding (NR_003659, exon 2 of 11)	5313	NR_003659	374666	Hs.459573	NM_199163		WASH3P	FAM39DP	WAS protein family homolog 3 pseudogene	pseudo
1.33122-10	chr10	115615759	115616258	+	0	NA	intron (NM_198514, intron 1 of 10)	intron (NM_198514, intron 1 of 10)	1617	NM_198514	374354	Hs.369924	NM_198514	ENSG00000196865	NHLRC2	-	NHL repeat containing 2	protein-coding
4.85452-6	chr11	45826354	45826853	+	0	NA	promoter-TSS (NM_018389)	promoter-TSS (NM_018389)	-38	NM_018389	55343	Hs.12211	NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
2.79014-2	chr6	13874032	13874531	+	0	NA	Intergenic	Intergenic	-50396	NM_001165034	221687	Hs.111164	NM_152737	ENSG00000180537	RNF182	-	ring finger protein 182	protein-coding
0.942041-2	chr11	6280291	6281286	+	0	NA	promoter-TSS (NM_176875)	promoter-TSS (NM_176875)	-116	NM_176875	887	Hs.203	NM_176875	ENSG00000110148	CCKBR	CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
2.80669-16	chr2	50371155	50371654	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-170063	NM_001320156	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
14.437-8	chr7	16835241	16835740	+	0	NA	intron (NM_006408, intron 6 of 7)	L3|LINE|CR1	9248	NM_006408	10551	Hs.530009	NM_006408	ENSG00000106541	AGR2	AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2	anterior gradient 2, protein disulphide isomerase family member	protein-coding
1.37869-32	chr15	72689530	72690029	+	0	NA	promoter-TSS (NM_001080462)	promoter-TSS (NM_001080462)	-889	NM_001080462	338949	Hs.446069	NM_001080462	ENSG00000187806	TMEM202	-	transmembrane protein 202	protein-coding
5.34617-5	chr21	45751785	45752284	+	0	NA	intron (NM_004928, intron 4 of 6)	intron (NM_004928, intron 4 of 6)	6187	NM_001271442	755	Hs.517331	NM_004928	ENSG00000160226	C21orf2	LRRC76|YF5/A2	chromosome 21 open reading frame 2	protein-coding
5.05845-20	chr8	140290634	140291133	+	0	NA	Intergenic	Intergenic	-364634	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
0.996329-19	chr10	113516186	113516685	+	0	NA	Intergenic	Intergenic	427102	NM_020918	57678	Hs.42586	NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
7.21246-13	chr1	246765517	246766016	+	0	NA	intron (NM_152609, intron 2 of 10)	MLT1F2|LTR|ERVL-MaLR	36127	NM_001139459	163882	Hs.368353	NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
1.15205	chr7	56131788	56132287	+	0	NA	TTS (NM_001009186)	TTS (NM_001009186)	120	NM_001146333	25870	Hs.279696	NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
0.731433-7	chr12	10875102	10875601	+	0	NA	intron (NM_001145426, intron 1 of 8)	CpG	602	NM_001145426	8531	Hs.221889	NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
7.69551-11	chr4	152653354	152653853	+	0	NA	intron (NM_004564, intron 2 of 12)	SVA_C|Other|Other	28572	NM_004564	5188	Hs.119316	NM_004564	ENSG00000059691	GATB	HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
1.12946-6	chr11	506155	506654	+	0	NA	intron (NM_203387, intron 1 of 10)	CpG	417	NM_002939	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
1.4691-5	chr15	27790635	27791134	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-384418	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
1.50581-21	chr1	22826924	22827423	+	0	NA	intron (NM_001330398, intron 3 of 15)	intron (NM_001330398, intron 3 of 15)	48829	NM_001083621	9923	Hs.418966	NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
1.02373-15	chr5	109594125	109594624	+	0	NA	Intergenic	Intergenic	255242	NR_031644	100302159		NR_031644	ENSG00000221436	MIR548F3	MIR548F-3|MIRN548F3|hsa-mir-548f-3	microRNA 548f-3	ncRNA
0.594835-3	chr15	100107278	100107777	+	0	NA	intron (NM_001130926, intron 1 of 9)	intron (NM_001130926, intron 1 of 9)	1394	NM_001130926	4205	Hs.268675	NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
0.0966115-18	chr2	219210429	219210928	+	0	NA	3' UTR (NM_015488, exon 10 of 10)	3' UTR (NM_015488, exon 10 of 10)	4044	NR_106868	102466197		NR_106868	ENSG00000278524	MIR6810	hsa-mir-6810	microRNA 6810	ncRNA
0.0130484-46	chr6	139349426	139349925	+	0	NA	promoter-TSS (NM_021243)	promoter-TSS (NM_021243)	-144	NM_021243	58527	Hs.600861	NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
0.700704-6	chr2	10465900	10466399	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	-4140	NM_001258357	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
1.61151-5	chr11	119438874	119439373	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	-143428	NM_001311162	7070	Hs.644697	NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
23.7059	chr2	104474567	104475066	+	0	NA	Intergenic	Intergenic	549974	NR_037885	100287010	Hs.694603	NR_037885		LOC100287010	-	uncharacterized LOC100287010	ncRNA
9.20819-12	chr8	30720697	30721196	+	0	NA	Intergenic	L1M4c|LINE|L1	-14413	NM_031271	56154	Hs.458316	NM_031271	ENSG00000133863	TEX15	CT42	testis expressed 15, meiosis and synapsis associated	protein-coding
8.12479-4	chr1	233334077	233334576	+	0	NA	intron (NM_014801, intron 15 of 33)	HAL1|LINE|L1	97133	NM_014801	80003	Hs.370605	NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex homolog 2 (Drosophila)	protein-coding
6.34512-8	chr8	580783	581282	+	0	NA	intron (NM_001303100, intron 5 of 5)	intron (NM_001303100, intron 5 of 5)	-85251	NM_175075	157695	Hs.289293	NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
3.22393-12	chr19	36048950	36049449	+	0	NA	intron (NM_000704, intron 10 of 21)	CpG-13517	5361	NM_000704	495	Hs.36992	NM_000704	ENSG00000105675	ATP4A	ATP6A	ATPase H+/K+ transporting alpha subunit	protein-coding
0.186345-8	chr6	74225343	74226204	+	0	NA	3' UTR (NM_001402, exon 8 of 8)	3' UTR (NM_001402, exon 8 of 8)	2388	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
10.0612	chr3	192734165	192734664	+	0	NA	Intergenic	Intergenic	-98464	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
27.167-2	chr18	48724338	48724837	+	0	NA	promoter-TSS (NM_016626)	promoter-TSS (NM_016626)	-536	NM_016626	51320	Hs.465144	NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
7.03335-9	chr6	110648924	110649423	+	0	NA	intron (NM_001123364, intron 1 of 4)	intron (NM_001123364, intron 1 of 4)	30302	NM_001123364	728464	Hs.722171	NM_001123364	ENSG00000053328	METTL24	C6orf186|dJ71D21.2	methyltransferase like 24	protein-coding
0.213631-2	chr14	77690493	77690992	+	0	NA	intron (NM_020431, intron 5 of 23)	MLT1K|LTR|ERVL-MaLR	-41819	NR_031661	100302236		NR_031661	ENSG00000221754	MIR1260A	MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a	microRNA 1260a	ncRNA
3.9794-10	chr16	30418400	30418899	+	0	NA	promoter-TSS (NM_001142305)	promoter-TSS (NM_001142305)	-86	NM_001142305	51333	Hs.148584	NM_016643	ENSG00000179965	ZNF771	DSC43	zinc finger protein 771	protein-coding
3.0103-4	chr18	26541515	26542014	+	0	NA	Intergenic	LTR41|LTR|ERVL	-784354	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
9.87163	chr17	7738113	7738612	+	0	NA	Intergenic	CpG	-4873	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine demethylase 6B	protein-coding
1.61151	chr11	117328050	117328549	+	0	NA	intron (NM_020693, intron 19 of 32)	intron (NM_020693, intron 19 of 32)	129728	NM_014956	22897	Hs.504009	NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
0.15923-3	chr14	49045016	49045515	+	0	NA	Intergenic	L1PA6|LINE|L1	-781048	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
0.609802-29	chr2	236528484	236528983	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	114338	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
18.2391-2	chr19	19391310	19391809	+	0	NA	intron (NM_172231, intron 8 of 13)	intron (NM_172231, intron 8 of 13)	-7485	NM_001001524	53345	Hs.531624	NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
17.4715	chr2	209421122	209421621	+	0	NA	intron (NR_136588, intron 1 of 5)	L1PA16|LINE|L1	14004	NR_136588	101927960	Hs.159960	NR_136588		LOC101927960	-	uncharacterized LOC101927960	ncRNA
18.7615-5	chr7	33745142	33745641	+	0	NA	Intergenic	Intergenic	-199132	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
1.0902-2	chr11	18033640	18034139	+	0	NA	intron (NM_012139, intron 1 of 10)	intron (NM_012139, intron 1 of 10)	820	NR_104040	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
1.86419-13	chr7	33344277	33344776	+	0	NA	intron (NM_001033604, intron 9 of 21)	SVA_A|Other|Other	175374	NM_014451	27241	Hs.372360	NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
11.4509-7	chr8	49320382	49320881	+	0	NA	Intergenic	Intergenic	-143496	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
4.4855-9	chr14	77373006	77373505	+	0	NA	Intergenic	Intergenic	-52726	NR_133913	105370578	Hs.574184	NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
6.81937-13	chr19	39893033	39893532	+	0	NA	Intergenic	CpG	-4205	NM_003407	7538	Hs.534052	NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
0.0436481-19	chr3	27525683	27526182	+	0	NA	promoter-TSS (NM_001321108)	promoter-TSS (NM_001321108)	-21	NR_135543	9497	Hs.250072	NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
2.61219-2	chr11	8703606	8704105	+	0	NA	promoter-TSS (NM_000990)	promoter-TSS (NM_000990)	-140	NM_000990	6157	Hs.523463	NM_000990	ENSG00000166441	RPL27A	L27A	ribosomal protein L27a	protein-coding
1.88425-22	chr2	46398907	46399406	+	0	NA	intron (NM_005400, intron 14 of 14)	intron (NM_005400, intron 14 of 14)	-125385	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
1.89767-20	chr7	157066172	157066671	+	0	NA	Intergenic	Intergenic	-63289	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
0.25028-23	chr6	157802891	157803390	+	0	NA	exon (NM_024630, exon 1 of 9)	exon (NM_024630, exon 1 of 9)	583	NM_153746	79683	Hs.596214	NM_024630	ENSG00000175048	ZDHHC14	NEW1CP	zinc finger DHHC-type containing 14	protein-coding
7.9588-6	chr8	134310350	134310849	+	0	NA	Intergenic	Intergenic	-1052	NM_001135242	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
1.58641	chr17	1302644	1303143	+	0	NA	intron (NR_024058, intron 1 of 6)	CpG	663	NR_024058	7531	Hs.513851	NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
2.52588-20	chr17	33469084	33469583	+	0	NA	promoter-TSS (NM_001014445)	promoter-TSS (NM_001014445)	1	NM_018096	54475	Hs.85570	NM_018096	ENSG00000073536	NLE1	Nle	notchless homolog 1	protein-coding
1.88425-10	chr5	36877908	36878407	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	1296	NM_133433	25836	Hs.481927	NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL, cohesin loading factor	protein-coding
5.67031-7	chr19	42461868	42462367	+	0	NA	intron (NM_006423, intron 3 of 4)	intron (NM_006423, intron 3 of 4)	1411	NM_006423	10567	Hs.11417	NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
14.034-5	chr18	69723218	69723717	+	0	NA	Intergenic	Intergenic	-274005	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
0.90444-3	chr3	13118899	13119398	+	0	NA	Intergenic	Intergenic	-4531	NM_001134382	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
5.81699-3	chr2	62532134	62532633	+	0	NA	Intergenic	Intergenic	89727	NM_001319075	10678	Hs.173203	NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
10-3	chr15	57846517	57847016	+	0	NA	Intergenic	Intergenic	-37336	NR_104369	145781	Hs.437256	NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
3.04518-5	chr17	60098036	60098535	+	0	NA	intron (NM_005121, intron 8 of 29)	SVA_D|Other|Other	44358	NM_005121	9969	Hs.282678	NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
11.9044-3	chr1	117014878	117015377	+	0	NA	intron (NR_125973, intron 2 of 3)	intron (NR_125973, intron 2 of 3)	6321	NR_125972	101929023	Hs.668091	NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
1.4752-14	chrX	107137240	107137739	+	0	NA	TTS (NR_110395)	TTS (NR_110395)	41721	NR_110395	101928335	Hs.657090	NR_110395	ENSG00000236064	LOC101928335	-	uncharacterized LOC101928335	ncRNA
1.45087	chr12	13332607	13333106	+	0	NA	Intergenic	Intergenic	-16746	NM_001423	2012	Hs.719042	NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
23.1336-2	chr8	59697064	59697563	+	0	NA	Intergenic	Intergenic	-124909	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
4.36519-9	chr9_gl000199_random	52474	52973	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
1.37272-15	chr1	197644670	197645427	+	0	NA	intron (NM_144977, intron 3 of 15)	intron (NM_144977, intron 3 of 15)	99575	NM_144977	163486	Hs.125056	NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
1.50581-12	chr6	56904781	56905280	+	0	NA	Intergenic	L1M1|LINE|L1	-6300	NM_020931	57691	Hs.709521	NM_020931	ENSG00000168116	KIAA1586	-	KIAA1586	protein-coding
9.1364-5	chr2	179971153	179971652	+	0	NA	3' UTR (NM_178123, exon 18 of 18)	3' UTR (NM_178123, exon 18 of 18)	-56616	NM_173648	285025	Hs.324341	NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
11.6622-3	chr2	2594871	2595370	+	0	NA	Intergenic	L1M1|LINE|L1	-260035	NM_015025	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
25.6225-3	chr8	17472196	17472695	+	0	NA	intron (NM_006207, intron 3 of 6)	MIR|SINE|MIR	38503	NM_006207	5157	Hs.458573	NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
7.72113-7	chr9	10825502	10826001	+	0	NA	Intergenic	L1PREC2|LINE|L1	212545	NR_110696	101929428	Hs.434446	NR_110696	ENSG00000226717	PTPRD-AS2	-	PTPRD antisense RNA 2 (head to head)	ncRNA
11.2668	chr3	15382535	15383034	+	0	NA	5' UTR (NM_001018009, exon 1 of 9)	5' UTR (NM_001018009, exon 1 of 9)	117	NM_001018009	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
7.16699-4	chr8	21881361	21881860	+	0	NA	promoter-TSS (NM_001286680)	promoter-TSS (NM_001286680)	-11	NM_001286680	10361	Hs.131055	NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
7.12198-5	chr9	125630584	125631083	+	0	NA	intron (NM_001100588, intron 9 of 20)	SVA_D|Other|Other	11765	NR_003071	692206	Hs.693253	NR_003071	ENSG00000212447	SNORD90	HBII-295	small nucleolar RNA, C/D box 90	snoRNA
2.82329-6	chr11	17375000	17375499	+	0	NA	intron (NM_001202439, intron 1 of 4)	CpG	1940	NM_001202439	374383	Hs.146274	NM_001009913	ENSG00000188211	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
0.0744648-4	chr5	6632975	6633474	+	0	NA	promoter-TSS (NM_001324322)	promoter-TSS (NM_001324322)	-211	NM_001047	6715	Hs.552	NM_001047	ENSG00000145545	SRD5A1	S5AR 1	steroid 5 alpha-reductase 1	protein-coding
7.52027-4	chr7	28612872	28613371	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-112477	NM_001011666	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
3.58526-10	chr11	18415762	18416261	+	0	NA	promoter-TSS (NR_028500)	promoter-TSS (NR_028500)	75	NM_001165415	3939	Hs.2795	NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
0.172766-18	chr4	122228904	122229403	+	0	NA	Intergenic	Intergenic	73028	NM_198179	84109	Hs.368977	NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
0.0524306-4	chr19	18527073	18528069	+	0	NA	Intergenic	L2c|LINE|L2	-2575	NM_032627	170463	Hs.515259	NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
6.53647-5	chr7	123672235	123672734	+	0	NA	exon (NM_001136002, exon 1 of 1)	exon (NM_001136002, exon 1 of 1)	1039	NM_001136002	730130	Hs.450249	NM_001136002	ENSG00000234224	TMEM229A	-	transmembrane protein 229A	protein-coding
3.49692	chr3	140998068	140998567	+	0	NA	exon (NM_001037172, exon 4 of 6)	exon (NM_001037172, exon 4 of 6)	-44738	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
8.18156-2	chr8	145692213	145692712	+	0	NA	exon (NM_145754, exon 3 of 17)	exon (NM_145754, exon 3 of 17)	742	NM_145754	90990	Hs.528713	NM_145754	ENSG00000167702	KIFC2	-	kinesin family member C2	protein-coding
0.390538-10	chr5	10761093	10761592	+	0	NA	promoter-TSS (NM_001291963)	promoter-TSS (NM_001291963)	45	NM_004394	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
0.227338-8	chr13	100620221	100620720	+	0	NA	intron (NM_033132, intron 1 of 1)	CpG	3708	NM_033132	85416	Hs.508570	NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
7.93174-13	chr8	96145625	96146124	+	0	NA	promoter-TSS (NM_024613)	promoter-TSS (NM_024613)	-75	NM_024613	79666	Hs.29724	NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
0.268721-30	chr2	60127742	60128241	+	0	NA	Intergenic	Intergenic	482180	NR_132991	106660609	Hs.565545	NR_132991	ENSG00000223929	MIR4432HG	-	MIR4432 host gene	ncRNA
11.7783	chr5	1168146	1168645	+	0	NA	Intergenic	L1M5|LINE|L1	10325	NR_109911	101928857	Hs.593732	NR_109911	ENSG00000249201	CTD-3080P12.3	-	uncharacterized LOC101928857	ncRNA
0.109954-30	chr17	17545011	17545510	+	0	NA	Intergenic	Intergenic	35742	NR_131243	105371564	Hs.369680	NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2 (non-protein coding)	ncRNA
0.231917-5	chr2	192543418	192543917	+	0	NA	intron (NM_001031716, intron 1 of 5)	intron (NM_001031716, intron 1 of 5)	805	NR_045623	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
2.48721-5	chr20	46377586	46378085	+	0	NA	intron (NM_198596, intron 2 of 20)	MLT1J|LTR|ERVL-MaLR	36973	NM_018837	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
4.37707-10	chr1	33774311	33774810	+	0	NA	intron (NM_001080438, intron 4 of 4)	SVA_B|Other|Other	12139	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGB3S|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
8.09668-7	chr5	42886749	42887248	+	0	NA	Intergenic	Intergenic	-74974	NM_005410	6414	Hs.275775	NM_005410	ENSG00000250722	SELENOP	SELP|SEPP|SEPP1|SeP	selenoprotein P	protein-coding
0.0921731-41	chr4	20250084	20250583	+	0	NA	Intergenic	Intergenic	-3195	NM_001289135	9353	Hs.29802	NM_004787	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit guidance ligand 2	protein-coding
1.37869-38	chr12	64615806	64616305	+	0	NA	promoter-TSS (NM_152440)	promoter-TSS (NM_152440)	21	NM_001300940	144577	Hs.444671	NM_152440	ENSG00000174206	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
0.599818-17	chr3	150803820	150804319	+	0	NA	promoter-TSS (NM_053002)	promoter-TSS (NM_053002)	-516	NM_053002	116931	Hs.744234	NM_053002	ENSG00000144893	MED12L	NOPAR|TNRC11L|TRALP|TRALPUSH	mediator complex subunit 12 like	protein-coding
0.736576-22	chr19	49457833	49458332	+	0	NA	promoter-TSS (NM_138764)	promoter-TSS (NM_138764)	-35	NM_004324	581	Hs.624291	NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
5.22879-13	chr1	223682054	223682553	+	0	NA	Intergenic	Intergenic	115588	NM_152610	164127	Hs.192090	NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
8.79426-12	chr12	10510291	10510790	+	0	NA	Intergenic	L1P3|LINE|L1	-5828	NR_120430	101928100	Hs.638425	NR_120430	ENSG00000245648	LOC101928100	-	uncharacterized LOC101928100	ncRNA
1.00727-10	chr4	54966698	54967197	+	0	NA	exon (NM_133267, exon 1 of 2)	exon (NM_133267, exon 1 of 2)	699	NM_133267	170825	Hs.371899	NM_133267	ENSG00000180613	GSX2	GSH2	GS homeobox 2	protein-coding
1.50581-15	chr20	48227510	48228009	+	0	NA	Intergenic	Intergenic	-43052	NM_000961	5740	Hs.302085	NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
0.452752-10	chr5	121851814	121852313	+	0	NA	Intergenic	Intergenic	-37281	NR_051996	153163	Hs.679757	NR_051996	ENSG00000250328	MGC32805	-	uncharacterized LOC153163	ncRNA
5.37602-5	chr2	119392370	119392869	+	0	NA	Intergenic	Intergenic	-32077	NR_110272	101927709	Hs.274529	NR_110272		LOC101927709	-	uncharacterized LOC101927709	ncRNA
3.40084-10	chr3	122710541	122711040	+	0	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	1330	NM_001256346	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
1.70696-13	chr11	71497782	71498281	+	0	NA	promoter-TSS (NM_152563)	promoter-TSS (NM_152563)	-526	NM_018172	55199	Hs.567527	NM_018172	ENSG00000158483	FAM86C1	FAM86C	family with sequence similarity 86 member C1	protein-coding
2.00659-13	chr1	162792102	162792601	+	0	NA	Intergenic	CpG	31859	NM_001304513	51478	Hs.492925	NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
12.0135	chr1	40220734	40221233	+	0	NA	non-coding (NR_036543, exon 10 of 10)	non-coding (NR_036543, exon 10 of 10)	16037	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
0.496351-35	chr9	130214206	130214705	+	0	NA	promoter-TSS (NM_000976)	promoter-TSS (NM_000976)	-79	NM_001005374	90678	Hs.495188	NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
0.428718-31	chr1	245861955	245862454	+	0	NA	exon (NM_018012, exon 14 of 15)	exon (NM_018012, exon 14 of 15)	543917	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
0.254883-17	chr17	73257615	73258114	+	0	NA	promoter-TSS (NM_014001)	promoter-TSS (NM_014001)	115	NM_015971	51081	Hs.71787	NM_015971	ENSG00000125445	MRPS7	MRP-S|MRP-S7|RP-S7|RPMS7|S7mt|bMRP27a	mitochondrial ribosomal protein S7	protein-coding
1.51195-3	chr10	69597674	69598173	+	0	NA	promoter-TSS (NM_021800)	promoter-TSS (NM_021800)	14	NM_021800	56521	Hs.260720	NM_021800	ENSG00000108176	DNAJC12	JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
0.996329-24	chr17	5046547	5047046	+	0	NA	intron (NM_004505, intron 17 of 29)	SVA_D|Other|Other	15109	NM_004505	9098	Hs.448851	NM_004505	ENSG00000129204	USP6	HRP1|TRE17|TRE2|TRESMCR|Tre-2|USP6-short	ubiquitin specific peptidase 6	protein-coding
0.90444-9	chr16	69352000	69352499	+	0	NA	intron (NM_013245, intron 3 of 10)	intron (NM_013245, intron 3 of 10)	6962	NM_013245	27183	Hs.128420	NM_013245	ENSG00000132612	VPS4A	SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
1.17475	chr1	60280009	60280508	+	0	NA	promoter-TSS (NM_015888)	promoter-TSS (NM_015888)	-275	NM_015888	51361	Hs.378836	NM_015888	ENSG00000134709	HOOK1	HK1	hook microtubule tethering protein 1	protein-coding
0.560111-19	chr4	82646111	82646610	+	0	NA	Intergenic	Intergenic	-253278	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
0.181814-16	chr15	75487702	75488201	+	0	NA	Intergenic	Intergenic	-6270	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
9.1364-7	chr5	73653546	73654045	+	0	NA	Intergenic	LTR53|LTR|ERVL	35484	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
0.788339-8	chr3	27763583	27764082	+	0	NA	5' UTR (NM_005442, exon 1 of 6)	5' UTR (NM_005442, exon 1 of 6)	374	NM_005442	8320	Hs.591663	NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
1.48742-5	chr1	167740209	167740708	+	0	NA	intron (NM_001146191, intron 2 of 2)	SVA_A|Other|Other	49271	NM_001146191	9019	Hs.493919	NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
3.95774-5	chr16	81129489	81130346	+	0	NA	promoter-TSS (NM_004483)	promoter-TSS (NM_004483)	63	NR_033249	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H	protein-coding
2.0204-15	chr5	94890547	94891046	+	0	NA	promoter-TSS (NM_198150)	promoter-TSS (NM_198150)	-29	NM_198150	153642	Hs.585051	NM_198150	ENSG00000164291	ARSK	TSULF	arylsulfatase family member K	protein-coding
0.254883-18	chr2	20615176	20615675	+	0	NA	Intergenic	L1PBa|LINE|L1	-31407	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
1.31356-3	chr16	2932458	2932957	+	0	NA	promoter-TSS (NM_001142499)	promoter-TSS (NM_001142499)	-489	NM_001142499	114984	Hs.534525	NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
0.177288-22	chr1	149605378	149605877	+	0	NA	promoter-TSS (NR_125392)	promoter-TSS (NR_125392)	-290	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
8.63279-8	chr21	37270461	37270960	+	0	NA	Intergenic	SVA_D|Other|Other	11967	NR_144547	54036	Hs.228809	NR_144547		PPP1R2P2	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2	pseudo
1.19758-14	chr8	57581505	57582004	+	0	NA	Intergenic	Intergenic	-109372	NR_038236	100507632	Hs.583755	NR_038236	ENSG00000246430	LINC00968	-	long intergenic non-protein coding RNA 968	ncRNA
3.01899-18	chr10	88854988	88855487	+	0	NA	promoter-TSS (NM_001318905)	promoter-TSS (NM_001318905)	284	NM_019054	54537	Hs.500419	NM_019054	ENSG00000122376	FAM35A	FAM35A1|bA163M19.1	family with sequence similarity 35 member A	protein-coding
15.7675-10	chr8	102169704	102170203	+	0	NA	Intergenic	Intergenic	48007	NM_016096	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
1.09579-23	chr7	100066808	100067307	+	0	NA	intron (NR_130119, intron 3 of 4)	intron (NR_130119, intron 3 of 4)	-5163	NM_001004323	402573	Hs.632306	NM_001004323	ENSG00000185955	C7orf61	-	chromosome 7 open reading frame 61	protein-coding
2.30623-8	chr18	20378916	20379415	+	0	NA	Intergenic	Intergenic	-12365	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
4.25969-21	chr20	31112584	31113083	+	0	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	15071	NR_110619	101929698	Hs.638392	NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
5.37602-4	chr21	44312753	44313252	+	0	NA	promoter-TSS (NM_001001503)	promoter-TSS (NM_001001503)	-376	NM_021075	4731	Hs.473937	NM_021075	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	NADH:ubiquinone oxidoreductase subunit V3	protein-coding
0.0305075-13	chrX	122994119	122994618	+	0	NA	intron (NR_037916, intron 1 of 5)	intron (NR_037916, intron 1 of 5)	351	NR_037916	331	Hs.356076	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
2.99296-7	chr17	77644358	77644857	+	0	NA	Intergenic	Intergenic	36451	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA
3.69572-7	chr2	74756141	74756640	+	0	NA	promoter-TSS (NM_013247)	promoter-TSS (NM_013247)	-142	NM_013247	27429	Hs.469045	NM_013247	ENSG00000115317	HTRA2	MGCA8|OMI|PARK13|PRSS25	HtrA serine peptidase 2	protein-coding
2.06908-5	chr9	140317312	140317811	+	0	NA	promoter-TSS (NM_006647)	promoter-TSS (NM_006647)	153	NM_017820	54932	Hs.495553	NM_017820	ENSG00000187609	EXD3	mut-7	exonuclease 3'-5' domain containing 3	protein-coding
4.76254-16	chr9	74930491	74930990	+	0	NA	TTS (NR_110953)	TTS (NR_110953)	10388	NR_110953	100507540	Hs.54957	NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
5.90067-11	chr9	14991895	14992394	+	0	NA	Intergenic	HAL1|LINE|L1	-1181	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
0.329203-12	chrX	100645965	100646464	+	0	NA	promoter-TSS (NM_001287344)	promoter-TSS (NM_001287344)	336	NM_001199974	100529097	Hs.432485	NM_001199973		RPL36A-HNRNPH2	-	RPL36A-HNRNPH2 readthrough	protein-coding
2.51812-6	chr8	34385495	34385994	+	0	NA	Intergenic	SVA_D|Other|Other	-255695	NR_125746	103689844	Hs.590682	NR_125746	ENSG00000254344	LINC01288	TCONS_00014671	long intergenic non-protein coding RNA 1288	ncRNA
4.1005	chr4	63806605	63807104	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-779371	NR_110595	101927186	Hs.723269	NR_110595		ADGRL3-AS1	LPHN3-AS1	adhesion G protein-coupled receptor L3 antisense RNA 1	ncRNA
0.979971-25	chr12	121974002	121974501	+	0	NA	intron (NM_032590, intron 6 of 22)	intron (NM_032590, intron 6 of 22)	44113	NM_001005366	84678	Hs.524800	NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
18.4771-3	chr15	78351787	78352286	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	17958	NM_015079	23102	Hs.567426	NM_015079	ENSG00000167202	TBC1D2B	-	TBC1 domain family member 2B	protein-coding
0.996329-15	chr7	100167521	100168020	+	0	NA	Intergenic	CpG	3500	NM_001168682	100316904	Hs.633863	NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
2.60428-7	chr1	6052383	6052882	+	0	NA	promoter-TSS (NR_111987)	promoter-TSS (NR_111987)	-99	NM_001291593	261734	Hs.462348	NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
2.05512	chr15	70288882	70289381	+	0	NA	Intergenic	Intergenic	82676	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
5.18557-5	chr1	117462411	117462910	+	0	NA	intron (NM_020440, intron 1 of 8)	intron (NM_020440, intron 1 of 8)	10115	NM_020440	5738	Hs.418093	NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
11.7587	chr3	177551081	177551580	+	0	NA	intron (NR_110826, intron 1 of 2)	intron (NR_110826, intron 1 of 2)	16677	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
0.123337-18	chr1	113051113	113051612	+	0	NA	promoter-TSS (NM_024494)	promoter-TSS (NM_024494)	-8	NM_024494	7482	Hs.258575	NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
0.25028-44	chr5	24232892	24233391	+	0	NA	Intergenic	Intergenic	281684	NR_131245	439936	Hs.638078	NR_131245	ENSG00000248874	C5orf17	-	chromosome 5 open reading frame 17	ncRNA
1.4752-17	chr10	43903066	43903565	+	0	NA	promoter-TSS (NM_001098206)	promoter-TSS (NM_001098206)	-16	NM_001098206	3185	Hs.808	NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
7.37549-14	chr1	231474936	231475435	+	0	NA	intron (NM_001010984, intron 1 of 3)	intron (NM_001010984, intron 1 of 3)	1503	NM_001010984	83932	Hs.554892	NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
0.376307-2	chr13	99229543	99230042	+	0	NA	promoter-TSS (NM_001286649)	promoter-TSS (NM_001286649)	-387	NM_001286649	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
0.273344-10	chr13	98081944	98082443	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4282	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
10.8672	chrX	18895507	18896006	+	0	NA	Intergenic	L1MA9|LINE|L1	-12658	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
13.536-3	chr6	67649754	67650253	+	0	NA	Intergenic	Intergenic	-1115240	NR_125869	102723883	Hs.566528	NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
2.96709-21	chr20	14563373	14563872	+	0	NA	intron (NR_104193, intron 1 of 4)	intron (NR_104193, intron 1 of 4)	28592	NR_104193	140848	Hs.570367	NR_104193	ENSG00000227927	MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1	ncRNA
2.73273-2	chr3	138161060	138161559	+	0	NA	intron (NM_031913, intron 1 of 22)	intron (NM_031913, intron 1 of 22)	7894	NM_001322831	83850	Hs.477711	NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
0.680339-39	chr9	112810442	112810941	+	0	NA	promoter-TSS (NM_001004065)	promoter-TSS (NM_001004065)	-187	NM_001004065	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding
6.14394-10	chr5	37791338	37791837	+	0	NA	Intergenic	MamRep605|Unknown|Unknown	43337	NM_001278098	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
0.736576-9	chr8	138367888	138368387	+	0	NA	Intergenic	LTR16A|LTR|ERVL	57694	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
21.343	chr11	34676311	34676810	+	0	NA	intron (NM_012153, intron 6 of 8)	intron (NM_012153, intron 6 of 8)	22549	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
3.16953-6	chr8	142438384	142438883	+	0	NA	intron (NM_032611, intron 4 of 4)	intron (NM_032611, intron 4 of 4)	7145	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
0.48177-31	chr1	162760640	162761139	+	0	NA	intron (NM_016371, intron 1 of 8)	intron (NM_016371, intron 1 of 8)	397	NM_001304513	51478	Hs.492925	NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
3.93619-6	chr16	1128448	1128947	+	0	NA	promoter-TSS (NR_027242)	promoter-TSS (NR_027242)	34	NR_027242	146336	Hs.250557	NM_182510	ENSG00000261713	SSTR5-AS1	-	SSTR5 antisense RNA 1	ncRNA
15.1999-2	chr10	118458797	118459296	+	0	NA	intron (NM_001330164, intron 5 of 12)	intron (NM_001330164, intron 5 of 12)	-29263	NM_001330142	143379	Hs.121347	NM_144661	ENSG00000165863	C10orf82	-	chromosome 10 open reading frame 82	protein-coding
1.21478-13	chr16	2581778	2582277	+	0	NA	promoter-TSS (NM_001048212)	promoter-TSS (NM_001048212)	-21	NR_036139	100422974		NR_036139	ENSG00000266232	MIR3178	mir-3178	microRNA 3178	ncRNA
0.245682-26	chr14	94236425	94236924	+	0	NA	intron (NM_178013, intron 3 of 4)	L2a|LINE|L2	18092	NM_178013	145270	Hs.432401	NM_178004	ENSG00000175785	PRIMA1	PRIMA	proline rich membrane anchor 1	protein-coding
0.127808	chr4	187476238	187476987	+	0	NA	5' UTR (NM_005958, exon 1 of 2)	5' UTR (NM_005958, exon 1 of 2)	109	NM_005958	4543	Hs.243467	NM_005958	ENSG00000168412	MTNR1A	MEL-1A-R|MT1	melatonin receptor 1A	protein-coding
7.56962-13	chr9	133342761	133343260	+	0	NA	intron (NM_000050, intron 7 of 15)	intron (NM_000050, intron 7 of 15)	22916	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
1.85752-12	chr7	150854642	150855141	+	0	NA	intron (NM_001098834, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	9744	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
3.24222-5	chr16	53583751	53584250	+	0	NA	Intergenic	Intergenic	-46784	NM_001308325	64400	Hs.380897	NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
3.08919-6	chr4	153857041	153857540	+	0	NA	intron (NR_136614, intron 1 of 1)	CpG	699	NR_136614	729870	Hs.310357	NR_136614		LOC729870	-	uncharacterized LOC729870	ncRNA
0.584886-12	chr14	63744247	63744746	+	0	NA	intron (NM_020663, intron 2 of 4)	intron (NM_020663, intron 2 of 4)	41097	NM_145171	122876	Hs.375028	NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone beta 5	protein-coding
2.54925-3	chr17	5972178	5972677	+	0	NA	Intergenic	Intergenic	-1507	NM_015253	23302	Hs.370166	NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
16.8403-3	chr15	78973874	78974373	+	0	NA	Intergenic	Intergenic	-40536	NM_000750	1143	Hs.624178	NM_000750	ENSG00000117971	CHRNB4	-	cholinergic receptor nicotinic beta 4 subunit	protein-coding
0.0966115	chr8	142441526	142442025	+	0	NA	3' UTR (NM_007079, exon 4 of 4)	3' UTR (NM_007079, exon 4 of 4)	10287	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
2.70026-2	chr12	108962531	108963030	+	0	NA	non-coding (NR_135127, exon 7 of 7)	non-coding (NR_135127, exon 7 of 7)	7541	NM_001301140	23479	Hs.615131	NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
19.6257-2	chr12	26439023	26439522	+	0	NA	Intergenic	Intergenic	90766	NM_005086	8082	Hs.183428	NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
6.61544	chr8	81080930	81081429	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	2256	NR_105036	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
1.6877-2	chr2	149894850	149895349	+	0	NA	5' UTR (NM_001317003, exon 1 of 6)	5' UTR (NM_001317003, exon 1 of 6)	118	NM_001317005	130576	Hs.357567	NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
9.39302-25	chr9	92219608	92220107	+	0	NA	promoter-TSS (NM_006705)	promoter-TSS (NM_006705)	-70	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
2.18245-9	chr3	9975086	9975585	+	0	NA	promoter-TSS (NM_015513)	promoter-TSS (NM_015513)	-189	NM_015513	78987	Hs.9383	NM_015513	ENSG00000163703	CRELD1	AVSD2|CIRRIN	cysteine rich with EGF like domains 1	protein-coding
0.0392635-34	chr7	130581650	130582149	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	16170	NR_110472	378805	Hs.150556	NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
0.0261362-56	chr12	62828572	62829071	+	0	NA	Intergenic	Intergenic	-31776	NM_001278471	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
0.428718	chr9	120175059	120175558	+	0	NA	intron (NM_014010, intron 1 of 21)	CpG	2009	NM_014010	23245	Hs.601562	NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
0.2365-29	chr4	159777937	159778436	+	0	NA	intron (NM_001346043, intron 8 of 15)	intron (NM_001346043, intron 8 of 15)	50940	NM_001323916	57600	Hs.652441	NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
0.639892-6	chr20	31330990	31331489	+	0	NA	5' UTR (NM_001099339, exon 1 of 9)	5' UTR (NM_001099339, exon 1 of 9)	575	NM_053041	149951	Hs.408427	NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
2.71646-11	chr12	65174681	65175180	+	0	NA	promoter-TSS (NM_001330188)	promoter-TSS (NM_001330188)	-43	NM_001330188	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
0.291884-29	chr11	34284866	34285365	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	94440	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
0.218195-3	chr9	81641127	81641626	+	0	NA	Intergenic	L2|LINE|L2	119205	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
11.1351-5	chr8	33454962	33455883	+	0	NA	promoter-TSS (NM_001305116)	promoter-TSS (NM_001305116)	-107	NM_001305116	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
1.17475-24	chrX	107513475	107513974	+	0	NA	intron (NM_001847, intron 3 of 44)	MLT1H|LTR|ERVL-MaLR	167936	NM_001287759	1288	Hs.145586	NM_001847	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3|DFNX6	collagen type IV alpha 6 chain	protein-coding
20.1547-2	chr6	166248018	166248517	+	0	NA	Intergenic	Intergenic	-152772	NR_027284	441177	Hs.708964	NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
13.019-5	chr3	116559731	116560230	+	0	NA	Intergenic	Intergenic	9234	NR_039649	100616485		NR_039649	ENSG00000265433	MIR4447	-	microRNA 4447	ncRNA
0.963675-8	chr7	155090039	155090538	+	0	NA	exon (NM_001346590, exon 2 of 7)	exon (NM_001346590, exon 2 of 7)	806	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
0.195421-24	chr16	56623178	56623677	+	0	NA	5' UTR (NM_005954, exon 1 of 3)	5' UTR (NM_005954, exon 1 of 3)	160	NM_005954	4504	Hs.73133	NM_005954	ENSG00000087250	MT3	GIF|GIFB|GRIF|ZnMT3	metallothionein 3	protein-coding
2.36572-16	chr6	168490318	168490817	+	0	NA	Intergenic	Intergenic	-8330	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
0.0788851-20	chr19	50528706	50529205	+	0	NA	promoter-TSS (NM_001006656)	promoter-TSS (NM_001006656)	-150	NM_016440	51231	Hs.443330	NM_016440	ENSG00000105053	VRK3	-	vaccinia related kinase 3	protein-coding
8.99629-12	chr11	8669775	8670274	+	0	NA	exon (NM_014818, exon 4 of 20)	exon (NM_014818, exon 4 of 20)	10359	NM_014818	9866	Hs.130836	NM_014818	ENSG00000166436	TRIM66	C11orf29|TIF1D|TIF1DELTA	tripartite motif containing 66	protein-coding
17.5696-3	chr14	100511589	100512088	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-19913	NM_016337	51466	Hs.125867	NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
15.6384-2	chr2	126737340	126737839	+	0	NA	Intergenic	Intergenic	-675922	NM_016815	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
10.9205-6	chr8	141458534	141459033	+	0	NA	intron (NM_031466, intron 2 of 22)	intron (NM_031466, intron 2 of 22)	9078	NM_001160372	83696	Hs.654911	NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex 9	protein-coding
3.75718-3	chr19	18314141	18314640	+	0	NA	intron (NM_002866, intron 1 of 4)	CpG	484	NM_002866	5864	Hs.27744	NM_002866	ENSG00000105649	RAB3A	-	RAB3A, member RAS oncogene family	protein-coding
1.02923-12	chr14	56386082	56386581	+	0	NA	Intergenic	SVA_B|Other|Other	-122939	NR_026797	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
9.82967-9	chr1	205197568	205198067	+	0	NA	promoter-TSS (NM_001242925)	promoter-TSS (NM_001242925)	-242	NM_001242925	9911	Hs.6360	NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
14.5842-7	chr2	129067091	129067590	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	8831	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
3.8934-2	chr5	139126748	139127247	+	0	NA	Intergenic	CpG	-1189	NR_105052	101929696	Hs.147408	NR_105052	ENSG00000249131	PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
1.83096-11	chrX	2410434	2410933	+	0	NA	intron (NM_001171136, intron 1 of 1).2	MLT1D|LTR|ERVL-MaLR	7897	NM_001171135	9189	Hs.131452	NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
3.29754-6	chr4	32133364	32133863	+	0	NA	intron (NR_125936, intron 1 of 2)	Tigger2|DNA|TcMar-Tigger	-109569	NR_134682	105377651	Hs.581935	NR_134682		LOC105377651	-	uncharacterized LOC105377651	ncRNA
1.35489-21	chr1	166136186	166136685	+	0	NA	promoter-TSS (NM_001320302)	promoter-TSS (NM_001320302)	-443	NR_135199	149297	Hs.22930	NM_001017961	ENSG00000188859	FAM78B	-	family with sequence similarity 78 member B	protein-coding
0.856568-2	chr9	134615245	134615744	+	0	NA	promoter-TSS (NM_001304275)	promoter-TSS (NM_001304275)	-163	NM_001304275	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
4.67246-14	chr1	235292038	235292537	+	0	NA	promoter-TSS (NM_014765)	promoter-TSS (NM_014765)	-31	NM_014765	9804	Hs.533192	NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
0.245682-2	chr8	41470193	41470692	+	0	NA	exon (NM_178819, exon 8 of 13)	exon (NM_178819, exon 8 of 13)	34436	NM_152568	157848		NM_152568	ENSG00000165066	NKX6-3	NKX6.3	NK6 homeobox 3	protein-coding
1.0902-13	chr7	123725128	123725627	+	0	NA	Intergenic	Intergenic	-51854	NM_001136002	730130	Hs.450249	NM_001136002	ENSG00000234224	TMEM229A	-	transmembrane protein 229A	protein-coding
11.7263-2	chr3	122839247	122839746	+	0	NA	intron (NM_006810, intron 8 of 16)	L2|LINE|L2	-41145	NR_106960	102465667		NR_106960	ENSG00000065485	MIR7110	hsa-mir-7110	microRNA 7110	ncRNA
5.157	chr14	34550818	34551317	+	0	NA	Intergenic	Intergenic	-130783	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
1.07905-24	chr9	135996882	135997381	+	0	NA	promoter-TSS (NM_006266)	promoter-TSS (NM_006266)	-494	NM_001271776	5900	Hs.106185	NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
9.66576-24	chr1	50576294	50576793	+	0	NA	intron (NM_001324215, intron 1 of 5)	intron (NM_001324215, intron 1 of 5)	1255	NM_001324213	1996	Hs.213050	NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
12.1467	chr9	128211453	128211952	+	0	NA	intron (NM_001006617, intron 10 of 11)	intron (NM_001006617, intron 10 of 11)	150533	NM_001282681	26130	Hs.42376	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
12.7901-3	chr21	34411771	34412270	+	0	NA	Intergenic	Intergenic	13804	NM_005806	10215	Hs.176977	NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte lineage transcription factor 2	protein-coding
7.37549-19	chr1	110714965	110715464	+	0	NA	intron (NM_001010898, intron 3 of 11)	intron (NM_001010898, intron 3 of 11)	22078	NM_001010898	388662	Hs.128382	NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
0.438316-4	chr17	77809823	77810322	+	0	NA	intron (NM_003655, intron 3 of 4)	intron (NM_003655, intron 3 of 4)	3141	NM_003655	8535	Hs.405046	NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
4.71083-4	chr17	77042901	77043400	+	0	NA	intron (NM_198593, intron 3 of 3)	intron (NM_198593, intron 3 of 3)	12769	NM_198593	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
0.419142-19	chr2	168150370	168150869	+	0	NA	Intergenic	CpG	106826	NM_001199145	129446	Hs.73680	NM_152381	ENSG00000163092	XIRP2	CMYA3	xin actin binding repeat containing 2	protein-coding
1.75874-22	chr4	7075254	7075753	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-5566	NM_025196	80273	Hs.443723	NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
1.52427-19	chr12	48276799	48277298	+	0	NA	intron (NM_000376, intron 1 of 9)	intron (NM_000376, intron 1 of 9)	21766	NM_001017536	7421	Hs.524368	NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D (1,25- dihydroxyvitamin D3) receptor	protein-coding
3.15155-14	chr9	135421573	135422072	+	0	NA	intron (NM_207417, intron 6 of 6)	intron (NM_207417, intron 6 of 6)	-36171	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
0.909791	chr1	156561506	156562005	+	0	NA	exon (NM_144772, exon 1 of 6)	exon (NM_144772, exon 1 of 6)	197	NM_144772	128240	Hs.528320	NM_144772	ENSG00000163382	NAXE	AIBP|APOA1BP|PEBEL|YJEFN1	NAD(P)HX epimerase	protein-coding
8.56985-2	chr15	82922776	82923275	+	0	NA	intron (NR_045529, intron 23 of 23).2	intron (NR_045529, intron 23 of 23).2	16172	NM_001322400	647042	Hs.454625	NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family-like 10	protein-coding
3.31614-7	chr4	39699322	39699821	+	0	NA	promoter-TSS (NM_005339)	promoter-TSS (NM_005339)	-93	NM_001111112	3093	Hs.50308	NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
4.02305	chr6	97345522	97346021	+	0	NA	promoter-TSS (NM_001323258)	promoter-TSS (NM_001323258)	-4	NM_014165	29078	Hs.512144	NM_014165	ENSG00000123545	NDUFAF4	C6orf66|HRPAP20|HSPC125|My013|bA22L21.1	NADH:ubiquinone oxidoreductase complex assembly factor 4	protein-coding
0.273344-9	chr11	122531835	122532334	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	5686	NM_032873	84959	Hs.444075	NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
1.57391-16	chr8	59721021	59721520	+	0	NA	intron (NM_014729, intron 7 of 8)	intron (NM_014729, intron 7 of 8)	-148866	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
1.51195-21	chr6	114292319	114292818	+	0	NA	promoter-TSS (NR_073443)	promoter-TSS (NR_073443)	-209	NM_001527	3066	Hs.3352	NM_001527	ENSG00000196591	HDAC2	HD2|RPD3|YAF1	histone deacetylase 2	protein-coding
1.29011-3	chr8	140289442	140289941	+	0	NA	Intergenic	Intergenic	-363442	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
6.81937-10	chr13	37631467	37631966	+	0	NA	intron (NM_001278481, intron 1 of 24)	AluJb|SINE|Alu	1908	NM_001278482	55578	Hs.435815	NM_017569	ENSG00000102710	SUPT20H	C13|C13orf19|FAM48A|FP757|P38IP|SPT20	SPT20 homolog, SAGA complex component	protein-coding
0.899095-6	chr4	76555299	76555798	+	0	NA	5' UTR (NM_001330724, exon 1 of 14)	5' UTR (NM_001330724, exon 1 of 14)	176	NM_001330724	8999	Hs.591698	NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
15.1999-5	chr9	22682399	22682898	+	0	NA	non-coding (NR_038977, exon 3 of 6)	non-coding (NR_038977, exon 3 of 6)	36449	NR_038977	441389		NR_038977	ENSG00000234840	LINC01239	-	long intergenic non-protein coding RNA 1239	ncRNA
2.13959-3	chr17	79925772	79926271	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-6964	NM_178493	147111	Hs.106137	NM_178493	ENSG00000185269	NOTUM	hNOTUM	NOTUM, palmitoleoyl-protein carboxylesterase	protein-coding
3.99027-16	chr7	122628593	122629092	+	0	NA	Intergenic	Intergenic	6912	NM_016945	50833	Hs.272395	NM_016945	ENSG00000128519	TAS2R16	T2R16	taste 2 receptor member 16	protein-coding
0.409586-15	chr19	3642921	3643420	+	0	NA	intron (NM_001195733, intron 13 of 16)	intron (NM_001195733, intron 13 of 16)	-16357	NM_021231	58509	Hs.128425	NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
4.52225-3	chr9	72288977	72289476	+	0	NA	Intergenic	L2b|LINE|L2	-1951	NM_001163	320	Hs.171939	NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
1.10138	chr2	176957187	176957686	+	0	NA	promoter-TSS (NM_000523)	promoter-TSS (NM_000523)	-96	NM_000523	3239	Hs.152414	NM_000523	ENSG00000128714	HOXD13	BDE|BDSD|HOX4I|SPD|SPD1	homeobox D13	protein-coding
3.30683-8	chr12	1930228	1930727	+	0	NA	intron (NM_001039029, intron 1 of 4)	intron (NM_001039029, intron 1 of 4)	1044	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
0.48177-37	chr1	36562574	36563073	+	0	NA	3' UTR (NM_005202, exon 4 of 4)	3' UTR (NM_005202, exon 4 of 4)	8370	NM_017825	54936	Hs.18021	NM_017825	ENSG00000116863	ADPRHL2	ARH3	ADP-ribosylhydrolase like 2	protein-coding
29.393-3	chr14	73213027	73213526	+	0	NA	intron (NM_012074, intron 3 of 9)	intron (NM_012074, intron 3 of 9)	146081	NM_001280544	8110	Hs.162868	NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4	double PHD fingers 3	protein-coding
0.352691-5	chr19	8219650	8220149	+	0	NA	Intergenic	Intergenic	-5169	NM_032447	84467	Hs.370362	NM_032447	ENSG00000142449	FBN3	-	fibrillin 3	protein-coding
7.30487-4	chr14	77782150	77782649	+	0	NA	intron (NM_013382, intron 1 of 20)	intron (NM_013382, intron 1 of 20)	4826	NM_013382	29954	Hs.132989	NM_013382	ENSG00000009830	POMT2	LGMD2N|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
0.301184-16	chr2	122018347	122018846	+	0	NA	intron (NM_014553, intron 2 of 14)	intron (NM_014553, intron 2 of 14)	24182	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
8.96196-16	chr7	25991546	25992045	+	0	NA	Intergenic	Intergenic	-2189	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
1.86419-2	chr10	30637678	30638177	+	0	NA	intron (NM_018109, intron 1 of 8)	intron (NM_018109, intron 1 of 8)	340	NM_018109	55149	Hs.173946	NM_018109	ENSG00000107951	MTPAP	PAPD1|SPAX4	mitochondrial poly(A) polymerase	protein-coding
3.43902-6	chr8	17270819	17271318	+	0	NA	promoter-TSS (NM_004686)	promoter-TSS (NM_004686)	-28	NM_004686	9108	Hs.625674	NM_004686	ENSG00000003987	MTMR7	-	myotubularin related protein 7	protein-coding
2.13959-9	chr12	12837238	12837737	+	0	NA	intron (NM_006143, intron 2 of 3)	intron (NM_006143, intron 2 of 3)	11634	NM_006143	2842	Hs.657862	NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
1.53663-11	chr2	10426950	10427449	+	0	NA	Intergenic	Intergenic	-15831	NM_002149	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
0.545314-5	chr11	36500283	36500782	+	0	NA	Intergenic	Intergenic	31331	NM_145803	7189	Hs.444172	NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
3.16953-4	chr15	101458128	101458627	+	0	NA	non-coding (NR_135831, exon 1 of 2)	non-coding (NR_135831, exon 1 of 2)	-1043	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine rich repeat kinase 1	protein-coding
5.22879-16	chr9	120971619	120972118	+	0	NA	Intergenic	Intergenic	505415	NM_138557	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
13.536-2	chr1	121127359	121127858	+	0	NA	intron (NM_001271870, intron 4 of 5)	intron (NM_001271870, intron 4 of 5)	12157	NR_104189	100873165	Hs.568525	NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
2.29148-13	chr20	30605954	30606453	+	0	NA	intron (NM_080625, intron 4 of 8)	intron (NM_080625, intron 4 of 8)	7958	NM_080625	140706	Hs.382151	NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffolding protein	protein-coding
12.7654-2	chr19	19335870	19336369	+	0	NA	intron (NM_004386, intron 6 of 14)	CpG-13339	13337	NM_004386	1463	Hs.169047	NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
0.501223-16	chr8	11321922	11322421	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	2105	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	family with sequence similarity 167 member A	protein-coding
13.4199-2	chr22	50686122	50686621	+	0	NA	exon (NM_001159286, exon 12 of 19)	exon (NM_001159286, exon 12 of 19)	-2971	NM_020461	85378	Hs.336431	NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex associated protein 6	protein-coding
2.66001-11	chr17	62774684	62775183	+	0	NA	non-coding (NR_027487, exon 3 of 3)	non-coding (NR_027487, exon 3 of 3)	-1944	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
5.21434-7	chr6	90885474	90885973	+	0	NA	intron (NM_021813, intron 4 of 8)	MER74B|LTR|ERVL	120904	NM_001170794	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
0.496351-46	chr17	61850850	61851349	+	0	NA	promoter-TSS (NM_020198)	promoter-TSS (NM_020198)	-11	NM_020198	57003	Hs.202011	NM_020198	ENSG00000108588	CCDC47	GK001|MSTP041	coiled-coil domain containing 47	protein-coding
0.0833099-46	chr8	90368810	90369309	+	0	NA	Intergenic	Intergenic	400880	NR_125822	101929709	Hs.651324	NR_125822	ENSG00000251136	LOC101929709	-	uncharacterized LOC101929709	ncRNA
0.414361-33	chr20	30410031	30410530	+	0	NA	intron (NM_033118, intron 4 of 12)	intron (NM_033118, intron 4 of 12)	3102	NM_033118	85366	Hs.86092	NM_033118	ENSG00000101306	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
5.70248	chr2	37577933	37578432	+	0	NA	intron (NM_012413, intron 1 of 6)	intron (NM_012413, intron 1 of 6)	6429	NM_012413	25797	Hs.79033	NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
1.75224-6	chr6	143117717	143118216	+	0	NA	intron (NM_006734, intron 2 of 9)	Tigger2b_Pri|DNA|TcMar-Tigger	148372	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
0.172766-39	chr1	175161250	175161749	+	0	NA	intron (NM_001162894, intron 1 of 3)	intron (NM_001162894, intron 1 of 3)	450	NM_001162895	9674	Hs.518138	NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
3.9794-14	chr11	62389383	62389882	+	0	NA	promoter-TSS (NM_001288721)	promoter-TSS (NM_001288721)	15	NM_012200	26229	Hs.502759	NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
2.35824-14	chr3	160939531	160940030	+	0	NA	intron (NM_015938, intron 1 of 15)	intron (NM_015938, intron 1 of 15)	702	NM_015938	51068	Hs.598836	NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
0.736576-19	chr2	182486665	182487164	+	0	NA	intron (NM_001030311, intron 1 of 13)	intron (NM_001030311, intron 1 of 13)	34920	NM_001030313	375298	Hs.732358	NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
1.33122-5	chr11	76510132	76510631	+	0	NA	Intergenic	CpG	7585	NM_001318477	25987	Hs.8361	NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
19.7881-4	chr5	173509167	173509666	+	0	NA	intron (NM_015980, intron 3 of 4)	intron (NM_015980, intron 3 of 4)	36809	NM_015980	51617	Hs.559412	NM_015980	ENSG00000170091	HMP19	-	HMP19 protein	protein-coding
2.60428-4	chr12	21298111	21298610	+	0	NA	intron (NM_006446, intron 2 of 14)	AluJb|SINE|Alu	14232	NM_006446	10599	Hs.449738	NM_006446	ENSG00000134538	SLCO1B1	HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6	solute carrier organic anion transporter family member 1B1	protein-coding
0.154727-11	chr20	30945998	30946497	+	0	NA	promoter-TSS (NM_015338)	promoter-TSS (NM_015338)	100	NM_001164603	171023	Hs.374043	NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	additional sex combs like 1, transcriptional regulator	protein-coding
7.01147-2	chr8	54342194	54342693	+	0	NA	Intergenic	Intergenic	-178186	NM_001318497	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
1.29011-18	chr14	100963527	100964026	+	0	NA	intron (NM_024515, intron 4 of 6)	intron (NM_024515, intron 4 of 6)	70631	NM_001159531	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
3.86158-5	chr6	43739015	43739907	+	0	NA	promoter-TSS (NM_001287044)	promoter-TSS (NM_001287044)	-261	NM_001287044	7422	Hs.73793	NM_003376	ENSG00000112715	VEGFA	MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
4.27128-19	chr2	217704343	217704842	+	0	NA	Intergenic	L2a|LINE|L2	20190	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
1.88425-27	chr7	141438038	141438537	+	0	NA	promoter-TSS (NM_001256510)	promoter-TSS (NM_001256510)	-120	NM_001256510	6742	Hs.490394	NM_003143	ENSG00000106028	SSBP1	Mt-SSB|SOSS-B1|SSBP|mtSSB	single stranded DNA binding protein 1	protein-coding
2.03426-6	chr18	35583871	35584370	+	0	NA	Intergenic	LTR1B|LTR|ERV1	347022	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
10-7	chr9	134141509	134142317	+	0	NA	intron (NM_033387, intron 1 of 1)	L2b|LINE|L2	9993	NM_033387	286336	Hs.143878	NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
1.07349-9	chr5	122435041	122435540	+	0	NA	intron (NM_001136239, intron 2 of 7)	CpG	10449	NM_001136239	93166	Hs.135118	NM_001136239	ENSG00000061455	PRDM6	KMT8C|PDA3|PRISM	PR/SET domain 6	protein-coding
9.87163-22	chr1	3590830	3591329	+	0	NA	intron (NM_005427, intron 1 of 13)	intron (NM_005427, intron 1 of 13)	-16157	NM_001126241	7161	Hs.192132	NM_005427	ENSG00000078900	TP73	P73	tumor protein p73	protein-coding
13.6351-2	chr10	116852679	116853178	+	0	NA	promoter-TSS (NM_001276282)	promoter-TSS (NM_001276282)	-196	NM_207303	26033	Hs.501127	NM_207303	ENSG00000107518	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin like 1	protein-coding
1.16339-6	chr1	169862223	169862722	+	0	NA	intron (NM_181093, intron 1 of 13)	CpG	628	NM_181093	57147	Hs.435560	NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
0.925886	chr5	110074381	110074880	+	0	NA	promoter-TSS (NM_138773)	promoter-TSS (NM_138773)	-43	NM_001303249	91137	Hs.75639	NM_138773	ENSG00000164209	SLC25A46	HMSN6B	solute carrier family 25 member 46	protein-coding
1.31944-19	chr16	30103112	30103611	+	0	NA	promoter-TSS (NM_004608)	promoter-TSS (NM_004608)	-156	NM_004608	6911	Hs.198301	NM_004608	ENSG00000149922	TBX6	SCDO5	T-box 6	protein-coding
0.231917-36	chr3	71993640	71994139	+	0	NA	Intergenic	Intergenic	155717	NR_104116	285286	Hs.559386	NR_104116	ENSG00000241163	LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
1.24939-12	chr1	61338238	61338737	+	0	NA	Intergenic	Intergenic	-47231	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
2.97569-18	chr4	26858982	26859481	+	0	NA	Intergenic	CpG	2635	NR_134675	105374546	Hs.548859	NR_134673		LOC105374546	-	uncharacterized LOC105374546	ncRNA
5.45155-3	chr2	192380264	192380763	+	0	NA	Intergenic	Intergenic	-162285	NR_045622	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
5.90067-9	chr16	29624828	29625327	+	0	NA	promoter-TSS (NR_135317)	promoter-TSS (NR_135317)	-39	NR_135317	440354	Hs.552700	NR_002473		SMG1P2	-	SMG1P2, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 2	pseudo
0.25028-33	chr2	8822843	8823342	+	0	NA	intron (NM_002166, intron 2 of 2)	intron (NM_002166, intron 2 of 2)	979	NM_002166	3398	Hs.180919	NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2, HLH protein	protein-coding
8.69666-6	chrX	136998217	136998716	+	0	NA	Intergenic	Intergenic	350120	NM_003413	7547	Hs.111227	NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
0.118872-24	chr12	25053399	25053898	+	0	NA	intron (NM_001178092, intron 1 of 8)	AluSx|SINE|Alu	1674	NM_001178094	586	Hs.438993	NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
2.58061-20	chr15	69590953	69591452	+	0	NA	promoter-TSS (NM_017705)	promoter-TSS (NM_017705)	-92	NM_017705	54852	Hs.591096	NM_017705	ENSG00000137819	PAQR5	MPRG	progestin and adipoQ receptor family member 5	protein-coding
30.0349-4	chr3	37823823	37824322	+	0	NA	intron (NM_002207, intron 25 of 27)	intron (NM_002207, intron 25 of 27)	79199	NR_110531	101928153	Hs.657314	NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
14.1567-4	chr7	36320095	36320594	+	0	NA	intron (NM_030636, intron 3 of 7)	intron (NM_030636, intron 3 of 7)	86438	NM_001199707	23366	Hs.6224	NM_015314	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
0.94744-2	chr14	107074402	107074901	+	0	NA	Intergenic	Intergenic	-18065	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
18.041	chr13	24027283	24027782	+	0	NA	Intergenic	Intergenic	-16119	NR_038995	100506697	Hs.50118	NR_038995	ENSG00000232977	LINC00327	NCRNA00327	long intergenic non-protein coding RNA 327	ncRNA
0.8302-8	chr8	27441067	27441566	+	0	NA	Intergenic	Intergenic	26952	NR_106902	102465508		NR_106902	ENSG00000120885	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
8.21023-2	chr15	92555151	92555650	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	157870	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
4.30626-7	chr11	124743732	124744231	+	0	NA	exon (NM_022370, exon 12 of 28)	exon (NM_022370, exon 12 of 28)	8676	NM_022370	64221	Hs.435621	NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
0.0261362-38	chr1	244534478	244534977	+	0	NA	intron (NM_001276349, intron 2 of 3)	intron (NM_001276349, intron 2 of 3)	18790	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
1.11821-18	chrX	39966496	39966995	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-27857	-10026	NM_001123385	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
0.34328-24	chr2	20814260	20814759	+	0	NA	Intergenic	Intergenic	-22201	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
0.2365-28	chr15	100535585	100536084	+	0	NA	intron (NM_139057, intron 19 of 21)	intron (NM_139057, intron 19 of 21)	188606	NR_135737	400464	Hs.187134	NM_001013670	ENSG00000259363	LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
1.50581-26	chr3	146261643	146262142	+	0	NA	intron (NM_021105, intron 1 of 8)	intron (NM_021105, intron 1 of 8)	736	NM_021105	5359	Hs.130759	NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
0.291884-36	chr15	63892834	63893333	+	0	NA	promoter-TSS (NR_034080)	promoter-TSS (NR_034080)	-57	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
0.0656377-13	chr1	32281419	32281918	+	0	NA	promoter-TSS (NM_001281988)	promoter-TSS (NM_001281988)	-16	NM_001281987	90853	Hs.62604	NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
0.5061-12	chr11	111749024	111749523	+	0	NA	promoter-TSS (NM_022761)	promoter-TSS (NM_022761)	-675	NM_001330371	64776	Hs.17546	NM_022761	ENSG00000137720	C11orf1	-	chromosome 11 open reading frame 1	protein-coding
10.013-3	chr11	126498909	126499408	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-23515	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
0.168249-12	chr5	38548380	38548879	+	0	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	8119	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
19.3554	chr22	19839577	19840076	+	0	NA	5' UTR (NM_024627, exon 3 of 3)	5' UTR (NM_024627, exon 3 of 3)	2545	NM_024627	79680	Hs.105642	NM_024627	ENSG00000215012	C22orf29	BOP	chromosome 22 open reading frame 29	protein-coding
7.67004-7	chr2	155556606	155557105	+	0	NA	TTS (NM_001260510)	TTS (NM_001260510)	1762	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding
1.52427-4	chr12	69928163	69928662	+	0	NA	intron (NM_001278356, intron 3 of 8)	intron (NM_001278356, intron 3 of 8)	-50091	NR_037476	100500868		NR_037476	ENSG00000283677	MIR3913-2	mir-3913-2	microRNA 3913-2	ncRNA
1.45694-19	chr18	55597634	55598133	+	0	NA	Intergenic	Intergenic	-113727	NM_015277	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
13.5754-2	chr9	79277366	79277865	+	0	NA	intron (NM_001308047, intron 9 of 17)	intron (NM_001308047, intron 9 of 17)	29716	NM_001308051	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding
3.27902-3	chr15	75986872	75987371	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	18068	NM_001897	1464	Hs.513044	NM_001897	ENSG00000173546	CSPG4	HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
0.404816-12	chr1	177882698	177883197	+	0	NA	Intergenic	Intergenic	56103	NM_033127	89866	Hs.149540	NM_033127	ENSG00000120341	SEC16B	LZTR2|PGPR-p117|RGPR|SEC16S	SEC16 homolog B, endoplasmic reticulum export factor	protein-coding
0.0436481-30	chr5	110559669	110560168	+	0	NA	promoter-TSS (NM_001323377)	promoter-TSS (NM_001323377)	-17	NM_001323376	814	Hs.438801	NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
6.81937-5	chr2	181572419	181572918	+	0	NA	intron (NR_104325, intron 1 of 5)	intron (NR_104325, intron 1 of 5)	15837	NR_104322	101669767		NR_104319	ENSG00000281131	SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)	ncRNA
11.7653	chr4	40858930	40859429	+	0	NA	promoter-TSS (NM_001166054)	promoter-TSS (NM_001166054)	-7	NM_001166051	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
8.96196-13	chr1	168908713	168909212	+	0	NA	intron (NR_104091, intron 3 of 4)	intron (NR_104091, intron 3 of 4)	147281	NR_104091	101978719	Hs.517849	NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
4.19075-8	chr11	73694356	73694855	+	0	NA	promoter-TSS (NM_003355)	promoter-TSS (NM_003355)	-716	NM_003355	7351	Hs.80658	NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
10.9098-3	chr1	203810220	203810719	+	0	NA	intron (NM_001319238, intron 14 of 19)	SVA_B|Other|Other	-20244	NM_003094	6635	Hs.334612	NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
5.62249-3	chr18	70104312	70104811	+	0	NA	Intergenic	UCON5|Unknown|Unknown	107162	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
1.54902-16	chr3	45732097	45732596	+	0	NA	intron (NM_001319073, intron 2 of 20)	intron (NM_001319073, intron 2 of 20)	1613	NM_001319072	22908	Hs.156509	NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding
0.2365-3	chr2	40140828	40141327	+	0	NA	Intergenic	Intergenic	-3697	NR_038441	100128590	Hs.744988	NR_038441	ENSG00000227028	SLC8A1-AS1	-	SLC8A1 antisense RNA 1	ncRNA
2.15383-3	chr7	111201496	111202426	+	0	NA	5' UTR (NM_032549, exon 1 of 6)	5' UTR (NM_032549, exon 1 of 6)	386	NM_032549	83943	Hs.655722	NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding
0.101054-15	chr3	119187512	119188011	+	0	NA	promoter-TSS (NM_152305)	promoter-TSS (NM_152305)	-24	NM_152305	56983	Hs.231750	NM_152305	ENSG00000163389	POGLUT1	C3orf9|CLP46|KDELCL1|KTELC1|LGMD2Z|MDS010|MDSRP|Rumi|hCLP46	protein O-glucosyltransferase 1	protein-coding
8.23909-8	chr17	41534009	41534508	+	0	NA	Intergenic	Intergenic	12084	NR_031751	100313779		NR_031751	ENSG00000267151	MIR2117	-	microRNA 2117	ncRNA
3.37242-6	chr22	43507100	43507599	+	0	NA	intron (NM_001197, intron 1 of 4)	CpG	595	NM_001197	638	Hs.475055	NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
0.883098-11	chr14	59655964	59656463	+	0	NA	intron (NM_001270520, intron 1 of 24)	CpG	832	NM_001270520	23002	Hs.19156	NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
2.9243-11	chr19	12170289	12170788	+	0	NA	Intergenic	Intergenic	-4976	NM_001136501	284391	Hs.646391	NM_001136501	ENSG00000223547	ZNF844	-	zinc finger protein 844	protein-coding
1.25518-8	chr2	19547568	19548067	+	0	NA	promoter-TSS (NR_039914)	promoter-TSS (NR_039914)	-373	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
4.78862-12	chr8	48078877	48079376	+	0	NA	Intergenic	Intergenic	-21804	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
2.34331-8	chr6	107987335	107987834	+	0	NA	Intergenic	Intergenic	66016	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
1.56145-4	chr10	88726285	88726784	+	0	NA	Intergenic	Intergenic	-1654	NM_006829	10974	Hs.642660	NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
3.90406	chr6	97371930	97372429	+	0	NA	promoter-TSS (NM_001286251)	promoter-TSS (NM_001286251)	-317	NR_104421	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
1.7134-6	chr16	23193668	23194167	+	0	NA	promoter-TSS (NM_001039)	promoter-TSS (NM_001039)	-123	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	sodium channel epithelial 1 gamma subunit	protein-coding
4.23659-3	chr1	197238108	197238607	+	0	NA	intron (NR_047564, intron 1 of 11)	intron (NR_047564, intron 1 of 11)	1023	NM_201253	23418	Hs.126135	NM_012076	ENSG00000134376	CRB1	LCA8|RP12	crumbs 1, cell polarity complex component	protein-coding
1.17475-17	chr16	1020779	1021278	+	0	NA	promoter-TSS (NM_022773)	promoter-TSS (NM_022773)	-44	NR_033646	64788	Hs.71912	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
3.05395-13	chr5	139127356	139127855	+	0	NA	Intergenic	CpG	-1797	NR_105052	101929696	Hs.147408	NR_105052	ENSG00000249131	PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
0.154727-17	chr3	196014847	196015346	+	0	NA	promoter-TSS (NM_005017)	promoter-TSS (NM_005017)	-473	NM_005017	5130	Hs.135997	NM_005017	ENSG00000161217	PCYT1A	CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1, choline, alpha	protein-coding
13.9903-4	chr3	183059310	183059809	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	86498	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
17.5696-4	chr9	4009051	4009550	+	0	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	110654	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
0.419142-41	chr1	42636541	42637040	+	0	NA	Intergenic	Intergenic	-6395	NM_033553	2980	Hs.778	NM_033553	ENSG00000197273	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A	protein-coding
1.77178-5	chr15	92887391	92887890	+	0	NA	Intergenic	Intergenic	-49477	NM_001330416	8128	Hs.302341	NM_006011	ENSG00000140557	ST8SIA2	HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
2.8567-3	chr19	37803585	37804084	+	0	NA	promoter-TSS (NR_138103)	promoter-TSS (NR_138103)	95	NR_138103	284459	Hs.657027	NM_181786	ENSG00000181666	HKR1	ZNF875	HKR1, GLI-Kruppel zinc finger family member	protein-coding
1.53663-38	chr17	21226202	21226701	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	35103	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
0.0174066-18	chr1	247495478	247495977	+	0	NA	promoter-TSS (NM_032752)	promoter-TSS (NM_032752)	-485	NM_032752	84838	Hs.168677	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
3.53596-6	chr1	1838781	1839280	+	0	NA	Intergenic	Intergenic	-7236	NM_138705	163688	Hs.85902	NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
0.48177-48	chr5	52284621	52285559	+	0	NA	promoter-TSS (NM_002203)	promoter-TSS (NM_002203)	-66	NR_073104	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
0.736576-26	chr3	75442392	75442891	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	41625	NR_024241	692099	Hs.591652	NR_024241	ENSG00000244026	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
3.64516-2	chr19	22763585	22764084	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-15225	NR_033899	440518	Hs.568223	NR_033899	ENSG00000269332	GOLGA2P9	-	golgin A2 pseudogene 9	pseudo
9.66576-12	chr11	67309643	67310142	+	0	NA	Intergenic	Intergenic	-18993	NM_001318496	51475	Hs.278984	NM_016366	ENSG00000167791	CABP2	DFNB93	calcium binding protein 2	protein-coding
10.7624-6	chr6	34163951	34164450	+	0	NA	Intergenic	CpG	-40377	NM_145903	3159	Hs.518805	NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
5.12862-11	chr2	33737032	33737531	+	0	NA	intron (NM_001139488, intron 2 of 17)	intron (NM_001139488, intron 2 of 17)	-1661	NM_015376	25780	Hs.143674	NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
7.28158-13	chr9	94537575	94538074	+	0	NA	intron (NM_004560, intron 2 of 8)	intron (NM_004560, intron 2 of 8)	-139197	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
4.82804-3	chr20	32627991	32628490	+	0	NA	intron (NM_007367, intron 2 of 8)	intron (NM_007367, intron 2 of 8)	-8685	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
2.03426-9	chr7	22396134	22396633	+	0	NA	intron (NM_012294, intron 1 of 25)	CpG	150	NM_012294	9771	Hs.174768	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
1.49967-10	chr16	23595092	23595591	+	0	NA	intron (NM_005003, intron 3 of 4)	SVA_C|Other|Other	12298	NM_005003	4706	Hs.189716	NM_005003	ENSG00000004779	NDUFAB1	ACP|FASN2A|SDAP	NADH:ubiquinone oxidoreductase subunit AB1	protein-coding
6.9897-13	chr20	25019249	25019748	+	0	NA	intron (NM_032501, intron 2 of 13)	intron (NM_032501, intron 2 of 13)	-6156	NM_001252676	84532	Hs.529353	NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
5.157-11	chr7	530011	530510	+	0	NA	Intergenic	Intergenic	29221	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
0.942041-3	chr12	12418485	12418984	+	0	NA	intron (NM_002336, intron 1 of 22)	intron (NM_002336, intron 1 of 22)	1077	NM_002336	4040	Hs.584775	NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding
1.19186-31	chr3	169341725	169342224	+	0	NA	intron (NM_004991, intron 1 of 16)	intron (NM_004991, intron 1 of 16)	39589	NM_001205194	2122	Hs.744090	NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
5.78396-7	chr7	55506198	55506697	+	0	NA	Intergenic	L2a|LINE|L2	73306	NM_018697	55915	Hs.595384	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like 2	protein-coding
0.867161-10	chr7	22599389	22599888	+	0	NA	Intergenic	Intergenic	-3318	NR_038393	100506178	Hs.668122	NR_038393	ENSG00000232759	LOC100506178	-	uncharacterized LOC100506178	ncRNA
6.7162-3	chrX	133419311	133419810	+	0	NA	Intergenic	SVA_B|Other|Other	48483	NM_001101357	347475	Hs.679431	NM_001101357	ENSG00000203952	CCDC160	-	coiled-coil domain containing 160	protein-coding
2.66001-10	chr16	80607557	80608056	+	0	NA	Intergenic	Intergenic	-1101	NR_104666	101928276	Hs.149769	NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
4.7237-16	chr4	45444449	45444948	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	681384	NM_173536	2565	Hs.375051	NM_173536	ENSG00000163285	GABRG1	-	gamma-aminobutyric acid type A receptor gamma1 subunit	protein-coding
0.268721-8	chr14	77227936	77228435	+	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	-50	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
19.0309	chr2	171318912	171319591	+	0	NA	intron (NM_001083615, intron 23 of 33)	intron (NM_001083615, intron 23 of 33)	-111798	NR_110576	101929753	Hs.534101	NR_110576		LOC101929753	-	uncharacterized LOC101929753	ncRNA
0.0877392-23	chr6	109803701	109804631	+	0	NA	intron (NM_001164313, intron 1 of 1)	CpG	274	NM_001164313	9841	Hs.409876	NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
0.305841-30	chr1	104677765	104678264	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	62369	NR_033990	100129138	Hs.514487	NR_033990	ENSG00000215869	LOC100129138	-	THAP domain containing, apoptosis associated protein 3 pseudogene	pseudo
1.67491-26	chr14	51410765	51411462	+	0	NA	exon (NM_002863, exon 1 of 20)	exon (NM_002863, exon 1 of 20)	135	NM_001163940	5836	Hs.282417	NM_002863	ENSG00000100504	PYGL	GSD6	glycogen phosphorylase L	protein-coding
4.86782-6	chr13	102681146	102681645	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	16959	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA
2.35077-9	chr11	101565880	101566379	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-111470	NM_004621	7225	Hs.159003	NM_004621	ENSG00000137672	TRPC6	FSGS2|TRP6	transient receptor potential cation channel subfamily C member 6	protein-coding
2.78189-5	chr6	34292474	34292973	+	0	NA	intron (NM_001202470, intron 6 of 8)	intron (NM_001202470, intron 6 of 8)	67734	NM_006703	11165	Hs.188882	NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
1.22053-10	chr8	84643489	84643988	+	0	NA	Intergenic	MER52A|LTR|ERV1	327745	NR_122034	103352670	Hs.399852	NR_122034	ENSG00000253898	LINC01419	LVCAT7|TCONS_00014497	long intergenic non-protein coding RNA 1419	ncRNA
0.101054-30	chr3	186542343	186542842	+	0	NA	intron (NR_125409, intron 1 of 3)	intron (NR_125409, intron 1 of 3)	718	NR_125409	102724699	Hs.518476	NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
0.296531-109	chr8	128558203	128558702	+	0	NA	Intergenic	MIRb|SINE|MIR	-64068	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
0.376307	chr6	7727751	7728250	+	0	NA	intron (NM_001718, intron 1 of 6)	CpG	1668	NM_001718	654	Hs.285671	NM_001718	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
7.47147-10	chr19	36422270	36422769	+	0	NA	Intergenic	CpG	-5503	NM_024509	79414	Hs.143792	NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
14.3415	chr4	152786380	152786879	+	0	NA	Intergenic	Intergenic	-104454	NM_004564	5188	Hs.119316	NM_004564	ENSG00000059691	GATB	HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
3.64516-7	chr11	130764201	130764700	+	0	NA	intron (NR_144939, intron 9 of 11)	intron (NR_144939, intron 9 of 11)	21932	NM_001347924	399979	Hs.444024	NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
0.070049-18	chr17	73126925	73127424	+	0	NA	TTS (NM_001304271)	TTS (NM_001304271)	716	NM_001252377	30833	Hs.67201	NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
1.6877-11	chr8	40759744	40760243	+	0	NA	Intergenic	Intergenic	-4650	NM_024645	79698	Hs.591850	NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
2.06908-3	chr7	157561408	157561907	+	0	NA	intron (NM_130843, intron 11 of 21)	intron (NM_130843, intron 11 of 21)	-85620	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
3.37242-21	chr9	80646026	80646525	+	0	NA	promoter-TSS (NM_002072)	promoter-TSS (NM_002072)	90	NM_002072	2776	Hs.269782	NM_002072	ENSG00000156052	GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
7.67004-5	chr6	9250980	9251479	+	0	NA	Intergenic	Intergenic	598787	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
7.01147-14	chr15	41062458	41062957	+	0	NA	exon (NM_001130448, exon 1 of 1)	exon (NM_001130448, exon 1 of 1)	548	NM_001130448	643338	Hs.631715	NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
2.45652-5	chr17	79678716	79679215	+	0	NA	promoter-TSS (NM_001270888)	promoter-TSS (NM_001270888)	-301	NM_012140	1468	Hs.548187	NM_012140	ENSG00000183048	SLC25A10	DIC	solute carrier family 25 member 10	protein-coding
1.59267-10	chr5	65017087	65017586	+	0	NA	promoter-TSS (NM_020726)	promoter-TSS (NM_020726)	605	NM_019072	54557	Hs.482301	NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat containing beta	protein-coding
85.4821	chr8	120119597	120120096	+	0	NA	3' UTR (NM_001324095, exon 8 of 8)	3' UTR (NM_001324095, exon 8 of 8)	-38825	NR_134297	101927513	Hs.676598	NR_134297	ENSG00000254278	LOC101927513	-	uncharacterized LOC101927513	ncRNA
4.27128-2	chr1	222790847	222791346	+	0	NA	promoter-TSS (NM_001324062)	promoter-TSS (NM_001324062)	-348	NM_001324063	375056	Hs.118474	NM_198551	ENSG00000154305	MIA3	ARNT|D320|TANGO|TANGO1|UNQ6077	MIA family member 3, ER export factor	protein-coding
0.705811	chr14	62646049	62646548	+	0	NA	Intergenic	Intergenic	-39607	NR_104063	101954204	Hs.607093	NR_104063	ENSG00000259142	LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA
0.0833099-21	chr19	12684665	12685164	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-22558	NM_144976	163050	Hs.655615	NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
0.310503-34	chr9	103518467	103518966	+	0	NA	Intergenic	Intergenic	178355	NM_001018116	347273	Hs.99004	NM_001018116	ENSG00000170681	MURC	CAVIN4|cavin-4	muscle related coiled-coil protein	protein-coding
5.55955-9	chr9	14322714	14323213	+	0	NA	intron (NM_001190738, intron 1 of 8)	CpG	-8918	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
2.98432-13	chr17	7107562	7108061	+	0	NA	intron (NM_001321075, intron 2 of 19)	intron (NM_001321075, intron 2 of 19)	676	NM_001321077	1742	Hs.463928	NM_001365	ENSG00000132535	DLG4	PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
2.26945-12	chr13	56127847	56128346	+	0	NA	Intergenic	Intergenic	379507	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	ncRNA
2.95849-8	chr5	1831614	1832113	+	0	NA	Intergenic	Intergenic	24819	NR_104602	101929034	Hs.128032	NR_104602	ENSG00000250417	LINC02116	-	long intergenic non-protein coding RNA 2116	ncRNA
3.85103-11	chr1	193027559	193028058	+	0	NA	promoter-TSS (NM_001173524)	promoter-TSS (NM_001173524)	715	NM_001199261	51377	Hs.145469	NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
0.101054-25	chr1	184004781	184005280	+	0	NA	intron (NM_001303421, intron 1 of 11)	intron (NM_001303421, intron 1 of 11)	1874	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
0.0392635-6	chr12	133021931	133022430	+	0	NA	Intergenic	Intergenic	-44977	NM_001142641	57666	Hs.411138	NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
1.19186	chr5	14200123	14200622	+	0	NA	intron (NM_007118, intron 1 of 56)	L2b|LINE|L2	56561	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
4.41291-4	chr11	125495349	125495848	+	0	NA	promoter-TSS (NR_045205)	promoter-TSS (NR_045205)	279	NM_001330427	1111	Hs.24529	NM_001274	ENSG00000149554	CHEK1	CHK1	checkpoint kinase 1	protein-coding
0.296531-12	chr20	49189438	49190259	+	0	NA	intron (NM_002827, intron 4 of 9)	intron (NM_002827, intron 4 of 9)	-12475	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
4.52225-2	chr3	143563035	143563534	+	0	NA	intron (NM_173653, intron 1 of 15)	intron (NM_173653, intron 1 of 15)	4089	NM_173653	285195	Hs.302257	NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
1.02923-7	chr20	43104792	43105291	+	0	NA	intron (NM_001039199, intron 1 of 4)	MIRb|SINE|MIR	515	NM_001039199	79183	Hs.283869	NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
21.3787	chr8	38388135	38388634	+	0	NA	Intergenic	Intergenic	-2204	NM_001303531	389649	Hs.546586	NM_207412	ENSG00000196166	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
25.5752-2	chr11	45533109	45533608	+	0	NA	Intergenic	Intergenic	140410	NR_122071	399886	Hs.559970	NR_122071	ENSG00000255267	LOC399886	-	uncharacterized LOC399886	ncRNA
15.7025-3	chr7	16397502	16398001	+	0	NA	intron (NM_001101417, intron 2 of 8)	LTR41|LTR|ERVL	63196	NM_001101417	729920	Hs.636502	NM_001101417	ENSG00000214960	ISPD	MDDGA7|MDDGC7|Nip|hCG_1745121	isoprenoid synthase domain containing	protein-coding
2.47184-2	chr15	78680026	78680525	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	47609	NM_004378	1381	Hs.346950	NM_004378	ENSG00000166426	CRABP1	CRABP|CRABP-I|CRABPI|RBP5	cellular retinoic acid binding protein 1	protein-coding
1.15771-21	chr2	27272697	27273196	+	0	NA	intron (NR_046730, intron 1 of 1)	CpG	186	NR_046730	100874031	Hs.132725	NR_046730	ENSG00000231636	AGBL5-AS1	-	AGBL5 antisense RNA 1	ncRNA
1.89767-6	chr6	144978605	144979104	+	0	NA	intron (NM_007124, intron 50 of 73)	intron (NM_007124, intron 50 of 73)	252063	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
0.101054-21	chr4	26856231	26856730	+	0	NA	Intergenic	Intergenic	5386	NR_134675	105374546	Hs.548859	NR_134673		LOC105374546	-	uncharacterized LOC105374546	ncRNA
10.2228-6	chr9	122998157	122998656	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	8922	NR_029604	406939		NR_029604	ENSG00000207814	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
12.0971	chr7	3615272	3615771	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	274441	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
0.540393-9	chr5	102149853	102150352	+	0	NA	intron (NM_001319943, intron 1 of 26)	intron (NM_001319943, intron 1 of 26)	-51425	NM_000919	5066	Hs.369430	NM_000919	ENSG00000145730	PAM	PAL|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
0.0217692-19	chr1	201642938	201643437	+	0	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	25737	NM_020443	89796	Hs.585374	NM_020443	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
0.241089-24	chr3	179650802	179651301	+	0	NA	intron (NM_001256750, intron 1 of 14)	intron (NM_001256750, intron 1 of 14)	33726	NR_110060	101928790	Hs.667247	NR_110059	ENSG00000244302	PEX5L-AS2	-	PEX5L antisense RNA 2	ncRNA
7.74691-8	chr11	9405918	9406806	+	0	NA	exon (NM_006391, exon 1 of 25)	exon (NM_006391, exon 1 of 25)	193	NM_006391	10527	Hs.744911	NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
12.7654	chr16	73650116	73650615	+	0	NA	Intergenic	Intergenic	229661	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LINC01568	-	long intergenic non-protein coding RNA 1568	ncRNA
1.67491-25	chr8	70906764	70907263	+	0	NA	Intergenic	Intergenic	76549	NM_024504	63978	Hs.736037	NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
11.4509-6	chr10	134120325	134120824	+	0	NA	5' UTR (NM_001318879, exon 1 of 12)	5' UTR (NM_001318879, exon 1 of 12)	152	NM_001318879	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
0.254883-28	chr9	131181160	131181659	+	0	NA	promoter-TSS (NM_001286760)	promoter-TSS (NM_001286760)	-30	NM_001286760	51148	Hs.495230	NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
2.66001-12	chr2	68452277	68452776	+	0	NA	intron (NM_000945, intron 1 of 5)	MLT1E3|LTR|ERVL-MaLR	27125	NM_000945	5534	Hs.280604	NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
3.41035-24	chr21	45845373	45845872	+	0	NA	promoter-TSS (NR_109964)	promoter-TSS (NR_109964)	-176	NR_109964	101928607	Hs.666176	NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
1.46302	chr5	33806694	33807193	+	0	NA	intron (NM_030955, intron 2 of 23)	L2|LINE|L2	85354	NM_030955	81792	Hs.12680	NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
0.338583-22	chr4	140876662	140877161	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	198322	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
0.472076-27	chr14	104009186	104009685	+	0	NA	Intergenic	Intergenic	13926	NM_152307	115708	Hs.525610	NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
2.74088	chr1	86682432	86682931	+	0	NA	Intergenic	SVA_F|Other|Other	-60560	NM_152890	255631	Hs.659516	NM_152890	ENSG00000171502	COL24A1	-	collagen type XXIV alpha 1 chain	protein-coding
0.69051	chr6	37484158	37484657	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	9283	NR_126057	100505530	Hs.582978	NM_001039791		LOC100505530	-	uncharacterized LOC100505530	ncRNA
3.60514-6	chr17	6543793	6544292	+	0	NA	promoter-TSS (NM_032731)	promoter-TSS (NM_032731)	-180	NM_032731	84817	Hs.408236	NM_032731	ENSG00000129235	TXNDC17	TRP14|TXNL5	thioredoxin domain containing 17	protein-coding
0.48177-47	chr20	23648955	23649454	+	0	NA	Intergenic	Intergenic	20458	NM_001899	1472	Hs.654549	NM_001899	ENSG00000101441	CST4	-	cystatin S	protein-coding
0.145735-18	chr10	21604163	21604662	+	0	NA	Intergenic	L2a|LINE|L2	141181	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
2.26214-5	chr11	1051008	1051507	+	0	NA	intron (NM_001323425, intron 1 of 3)	intron (NM_001323425, intron 1 of 3)	1479	NM_001323425	101927503	Hs.436626	NM_001323425		LOC101927503	-	uncharacterized LOC101927503	protein-coding
0.347983-3	chr3	23986499	23986998	+	0	NA	promoter-TSS (NM_001145425)	promoter-TSS (NM_001145425)	-3	NM_005126	9975	Hs.37288	NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
0.639892-14	chrX	150250691	150251190	+	0	NA	Intergenic	CpG	-85754	NR_036256	100422930		NR_036256	ENSG00000265789	MIR4330	-	microRNA 4330	ncRNA
9.50782-12	chr3	114305031	114305530	+	0	NA	intron (NR_121662, intron 3 of 6)	intron (NR_121662, intron 3 of 6)	37773	NM_001164347	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
11.8977	chr2	153322393	153322892	+	0	NA	intron (NM_052905, intron 1 of 25)	intron (NM_052905, intron 1 of 25)	130891	NM_052905	114793	Hs.654630	NM_052905	ENSG00000157827	FMNL2	FHOD2	formin like 2	protein-coding
5.867-7	chr9	91933839	91934338	+	0	NA	intron (NM_001282690, intron 1 of 16)	intron (NM_001282690, intron 1 of 16)	322	NM_001282690	79048	Hs.59804	NM_024077	ENSG00000187742	SECISBP2	SBP2	SECIS binding protein 2	protein-coding
2.99296-21	chr1	204224197	204224696	+	0	NA	intron (NM_014935, intron 9 of 22)	intron (NM_014935, intron 9 of 22)	-41226	NM_198447	127845	Hs.532401	NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b	golgi transport 1A	protein-coding
2.08309-2	chr16	57770407	57770906	+	0	NA	intron (NM_005886, intron 1 of 19)	intron (NM_005886, intron 1 of 19)	996	NM_005886	10300	Hs.275675	NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
1.37272-18	chr14	96504922	96505421	+	0	NA	promoter-TSS (NM_001252507)	promoter-TSS (NM_001252507)	-490	NM_001289139	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
13.279-3	chr5	157327619	157328118	+	0	NA	Intergenic	L1MD2|LINE|L1	-41685	NM_014666	9685	Hs.644000	NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
0.47692-16	chr20	2853308	2853807	+	0	NA	promoter-TSS (NM_080840)	promoter-TSS (NM_080840)	-585	NM_080840	5786	Hs.269577	NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase, receptor type A	protein-coding
1.61781-4	chr19	38663848	38664347	+	0	NA	intron (NM_015073, intron 15 of 21)	intron (NM_015073, intron 15 of 21)	50793	NM_001135155	8193	Hs.631576	NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	double PHD fingers 1	protein-coding
2.51037-10	chr22	30987705	30988204	+	0	NA	promoter-TSS (NM_014303)	promoter-TSS (NM_014303)	-27	NM_001243225	23481	Hs.517543	NM_014303	ENSG00000100029	PES1	PES	pescadillo ribosomal biogenesis factor 1	protein-coding
0.798767-20	chr13	34392522	34393021	+	0	NA	intron (NM_181558, intron 1 of 8)	L2a|LINE|L2	565	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
1.81774-15	chr14	26302823	26303322	+	0	NA	Intergenic	Intergenic	763888	NM_006491	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
7.12198-3	chr3	142106503	142107002	+	0	NA	intron (NM_019001, intron 20 of 41)	MSTB1|LTR|ERVL-MaLR	60152	NM_019001	54464	Hs.435103	NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
1.48742-6	chr20	61342937	61343436	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	2997	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
11.7457-6	chr16	30751610	30752109	+	0	NA	TTS (NM_006662)	TTS (NM_006662)	347	NM_001256829	100862671	Hs.667372	NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
0.639892-12	chr5	60139602	60140375	+	0	NA	5' UTR (NM_024930, exon 1 of 9)	5' UTR (NM_024930, exon 1 of 9)	113	NM_001104558	79993	Hs.274256	NM_024930	ENSG00000164181	ELOVL7	-	ELOVL fatty acid elongase 7	protein-coding
0.75204-3	chr3	149530662	149531161	+	0	NA	5' UTR (NM_007282, exon 1 of 11)	5' UTR (NM_007282, exon 1 of 11)	436	NM_183381	11342	Hs.12333	NM_007282	ENSG00000082996	RNF13	RZF	ring finger protein 13	protein-coding
2.17527-7	chr9	88649782	88650281	+	0	NA	intron (NM_177937, intron 8 of 9)	intron (NM_177937, intron 8 of 9)	64479	NM_016548	51280	Hs.494337	NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
10.2319	chr15	71326916	71327415	+	0	NA	intron (NM_017691, intron 14 of 15)	L1PA10|LINE|L1	80674	NM_001102658	196993	Hs.646533	NM_001102658	ENSG00000225362	CT62	-	cancer/testis antigen 62	protein-coding
1.28427	chr5	98263674	98264173	+	0	NA	promoter-TSS (NR_036530)	promoter-TSS (NR_036530)	-915	NR_036530	100289230	Hs.552095	NR_036530		LOC100289230	-	uncharacterized LOC100289230	ncRNA
0.419142-22	chr6	32040772	32041271	+	0	NA	intron (NM_019105, intron 12 of 43).2	intron (NM_019105, intron 12 of 43).2	-27116	NM_032470	7148	Hs.485104	NM_019105	ENSG00000168477	TNXB	EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
5.8838-6	chr12	54718505	54719340	+	0	NA	promoter-TSS (NR_073424)	promoter-TSS (NR_073424)	48	NM_016057	22818	Hs.505652	NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	coatomer protein complex subunit zeta 1	protein-coding
0.366845-16	chr22	23035197	23035696	+	0	NA	Intergenic	Intergenic	46664	NM_199127	91227	Hs.450000	NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
11.9111-2	chr19	5587435	5587934	+	0	NA	intron (NM_014649, intron 20 of 20)	intron (NM_014649, intron 20 of 20)	-19639	NR_027064	257000	Hs.515575	NM_153375	ENSG00000223573	TINCR	LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16	tissue differentiation-inducing non-protein coding RNA	ncRNA
29.8297-2	chr15	93808114	93808613	+	0	NA	Intergenic	Charlie13b|DNA|hAT-Charlie	-175920	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
16.4397-3	chr1	170697072	170697571	+	0	NA	intron (NM_022716, intron 3 of 3)	intron (NM_022716, intron 3 of 3)	64008	NM_022716	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
0.0436481-32	chr7	1025736	1026235	+	0	NA	intron (NM_017781, intron 4 of 8)	intron (NM_017781, intron 4 of 8)	3150	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
0.213631-17	chr6	170465544	170466043	+	0	NA	Intergenic	Intergenic	-10073	NR_125878	102724511	Hs.550045	NR_125878		LOC102724511	-	uncharacterized LOC102724511	ncRNA
3.7059-7	chr7	127645057	127645556	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	7744	NR_027330	27099	Hs.657377	NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
3.17855-8	chr11	19836571	19837070	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	-55191	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
0.301184-21	chr20	62588553	62589052	+	0	NA	TTS (NR_027287)	TTS (NR_027287)	-1002	NM_017859	54963	Hs.504998	NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
7.79892-4	chr18	40194534	40195033	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	428150	NR_046458	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
18.8941-5	chr5	38492428	38492927	+	0	NA	intron (NM_001127671, intron 14 of 19)	intron (NM_001127671, intron 14 of 19)	47099	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
0.2365-21	chr4	46650048	46650547	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-258212	NM_001286827	2555	Hs.48372	NM_000807	ENSG00000151834	GABRA2	-	gamma-aminobutyric acid type A receptor alpha2 subunit	protein-coding
3.18759-13	chr1	50546784	50547283	+	0	NA	intron (NM_001324208, intron 1 of 6)	intron (NM_001324208, intron 1 of 6)	-22549	NM_001144776	1996	Hs.213050	NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
1.51195-33	chr1	200064127	200064626	+	0	NA	intron (NM_001276464, intron 4 of 6)	AluJr|SINE|Alu	52423	NM_001276464	2494	Hs.33446	NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
10.1457	chr13	108295108	108295607	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-111761	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
0.385789-33	chr12	58937357	58937856	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-47878	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
6.94649-3	chr2	20555828	20556327	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-5466	NM_015317	23369	Hs.467824	NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
0.90444-13	chr2	54837807	54838306	+	0	NA	intron (NM_003128, intron 3 of 35)	Tigger2|DNA|TcMar-Tigger	52525	NM_178313	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
0.746879-9	chr14	20746460	20746959	+	0	NA	Intergenic	Intergenic	27444	NM_138376	91875	Hs.98553	NM_138376	ENSG00000136319	TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
13.0016-2	chr11	79002826	79003325	+	0	NA	intron (NM_001098816, intron 2 of 33)	intron (NM_001098816, intron 2 of 33)	110078	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
6.94649-12	chr1	62649112	62649611	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-11113	NM_019079	54596	Hs.685462	NM_019079	ENSG00000240563	L1TD1	ECAT11	LINE1 type transposase domain containing 1	protein-coding
3.19664-8	chr22	31741477	31741976	+	0	NA	5' UTR (NM_032050, exon 1 of 4)	5' UTR (NM_032050, exon 1 of 4)	523	NM_032051	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
3.33482	chr1	247335093	247335592	+	0	NA	promoter-TSS (NM_001243740)	promoter-TSS (NM_001243740)	-23	NM_001297569	7678	Hs.421238	NM_003431	ENSG00000196418	ZNF124	HZF-16|HZF16|ZK7	zinc finger protein 124	protein-coding
0.496351-13	chr11	8247113	8247612	+	0	NA	intron (NM_002315, intron 3 of 3)	intron (NM_002315, intron 3 of 3)	38063	NR_073006	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
9.39302-9	chr14	93040443	93040942	+	0	NA	intron (NM_024832, intron 2 of 9)	LTR9|LTR|ERV1	-1887	NM_001319987	79890	Hs.326822	NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
0.132283-23	chr6	144536959	144537458	+	0	NA	Intergenic	CpG	65554	NM_003764	8676	Hs.118958	NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
3.47754-3	chr17	21191355	21191854	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	256	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
9.35542-13	chr11	31499015	31499514	+	0	NA	intron (NM_144981, intron 1 of 6)	intron (NM_144981, intron 1 of 6)	31911	NM_001304274	196294	Hs.502223	NM_144981	ENSG00000148950	IMMP1L	IMMP1|IMP1|IMP1-LIKE	inner mitochondrial membrane peptidase subunit 1	protein-coding
7.16699-22	chr20	43334817	43335316	+	0	NA	Intergenic	Intergenic	-8419	NM_001323370	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
3.37242-2	chr8	130036062	130036561	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	217175	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
1.61151-11	chrX	16737360	16737859	+	0	NA	promoter-TSS (NM_032796)	promoter-TSS (NM_032796)	-98	NR_033181	94056	Hs.744256	NM_032796	ENSG00000169895	SYAP1	PRO3113	synapse associated protein 1	protein-coding
3.8405-24	chr2	239197302	239197801	+	0	NA	promoter-TSS (NM_022817)	promoter-TSS (NM_022817)	-344	NM_022817	8864	Hs.58756	NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian clock 2	protein-coding
3.81952-13	chr11	118910256	118910755	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-8889	NM_001164278	2542	Hs.719203	NM_001467	ENSG00000137700	SLC37A4	G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
0.0966115-23	chr1	249238331	249238830	+	0	NA	Intergenic	TAR1|Satellite|telo	38138	NM_001017434	267002	Hs.602037	NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
0.231917-17	chrX	149862138	149862637	+	0	NA	intron (NM_001306144, intron 1 of 15)	intron (NM_001306144, intron 1 of 15)	550	NM_003828	8776	Hs.347187	NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
0.680339-26	chr3	165554683	165555182	+	0	NA	intron (NR_137636, intron 1 of 4)	intron (NR_137636, intron 1 of 4)	328	NM_000055	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
18.0688-2	chr10	73565717	73566216	+	0	NA	exon (NM_022124, exon 55 of 68)	exon (NM_022124, exon 55 of 68)	-5674	NM_001171936	64072	Hs.656032	NM_022124	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin related 23	protein-coding
2.58061-13	chr2	236567398	236567897	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	153252	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
17.8252	chr12	1944931	1945430	+	0	NA	3' UTR (NM_001163925, exon 5 of 5)	3' UTR (NM_001163925, exon 5 of 5)	15747	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
0.0568285-3	chr12	14867299	14867798	+	0	NA	Intergenic	LTR9|LTR|ERV1	-18029	NM_004963	2984	Hs.524278	NM_004963	ENSG00000070019	GUCY2C	DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR	guanylate cyclase 2C	protein-coding
0.736576-33	chr20	13202371	13202870	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	202	NM_080826	140862	Hs.559353	NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
0.070049-5	chr7	73894869	73895368	+	0	NA	intron (NM_001199207, intron 1 of 26)	intron (NM_001199207, intron 1 of 26)	26998	NM_005685	9569	Hs.647056	NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
6.55608-13	chr1	227133126	227133625	+	0	NA	intron (NM_020247, intron 1 of 14)	intron (NM_020247, intron 1 of 14)	5437	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
20.1863-2	chr11	113969555	113970054	+	0	NA	intron (NM_001018011, intron 2 of 6)	intron (NM_001018011, intron 2 of 6)	38516	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
6.75718-14	chr20	25300770	25301269	+	0	NA	intron (NM_001042472, intron 3 of 12)	intron (NM_001042472, intron 3 of 12)	70599	NM_001042472	26090	Hs.441550	NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2	abhydrolase domain containing 12	protein-coding
0.685421-17	chr2	111490056	111490555	+	0	NA	5' UTR (NM_001142807, exon 1 of 18)	5' UTR (NM_001142807, exon 1 of 18)	155	NM_001142807	55289	Hs.253320	NM_018308	ENSG00000153093	ACOXL	-	acyl-CoA oxidase-like	protein-coding
0.634863	chr11	65479208	65479707	+	0	NA	promoter-TSS (NM_006388)	promoter-TSS (NM_006388)	-16	NM_006388	10524	Hs.397010	NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
0.629839	chr14	42592495	42592994	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	516685	NR_144388	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
10.1278-2	chr10	51903240	51903739	+	0	NA	Intergenic	L2a|LINE|L2	75841	NM_001005751	387680	Hs.365286	NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
0.282604-12	chr12	65950410	65950909	+	0	NA	non-coding (NR_135033, exon 2 of 3)	non-coding (NR_135033, exon 2 of 3)	432	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
1.82435-19	chr3	179803052	179803551	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-48460	NM_016559	51555	Hs.235331	NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding
2.94136-2	chr6	54584334	54584833	+	0	NA	Intergenic	Intergenic	-126986	NM_001010872	222584	Hs.152423	NM_001010872	ENSG00000168143	FAM83B	C6orf143	family with sequence similarity 83 member B	protein-coding
0.835461-12	chr3	93801119	93801618	+	0	NA	intron (NM_022072, intron 2 of 5)	Helitron3Na_Mam|RC|Helitron	-19301	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
20.4964-5	chr1	206577587	206578086	+	0	NA	intron (NM_001170637, intron 5 of 19)	intron (NM_001170637, intron 5 of 19)	20469	NR_120535	100996712	Hs.497575	NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
6.75718-12	chr8	117767679	117768178	+	0	NA	exon (NM_003756, exon 1 of 8)	exon (NM_003756, exon 1 of 8)	134	NM_003756	8667	Hs.492599	NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
5.01689-2	chr8	9912392	9913272	+	0	NA	intron (NM_012331, intron 1 of 5)	MER5C1|DNA|hAT-Charlie	1053	NM_001135670	4482	Hs.490981	NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
2.11832	chr14	47509579	47510078	+	0	NA	intron (NM_001113498, intron 7 of 16)	intron (NM_001113498, intron 7 of 16)	302621	NR_103766	161357	Hs.436380	NM_182830	ENSG00000139915	MDGA2	MAMDC1|c14_5286	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
0.726296-10	chr15	89899921	89900420	+	0	NA	Intergenic	Intergenic	-4640	NR_133001	254559	Hs.136313	NR_015411	ENSG00000255571	MIR9-3HG	LINC00925	MIR9-3 host gene	ncRNA
0.979971-23	chr15	41709303	41709802	+	0	NA	intron (NM_015138, intron 1 of 17)	CpG	250	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
12.7819	chr2	52021579	52022078	+	0	NA	intron (NR_135237, intron 6 of 10)	L1PB1|LINE|L1	-575958	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA
0.00434512-49	chr5	158768864	158769363	+	0	NA	intron (NR_037889, intron 2 of 4)	intron (NR_037889, intron 2 of 4)	10587	NR_037889	285626	Hs.449275	NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
16.1979-2	chr10	15429398	15429897	+	0	NA	Intergenic	FRAM|SINE|Alu	-16589	NM_001010924	221061	Hs.66762	NM_001010924	ENSG00000148468	FAM171A1	C10orf38	family with sequence similarity 171 member A1	protein-coding
1.9382-5	chr6	151771864	151772363	+	0	NA	intron (NM_017909, intron 1 of 11)	SVA_D|Other|Other	1203	NM_001271937	55005	Hs.486835	NM_017909	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog	protein-coding
4.74955-7	chr5	172661979	172662478	+	0	NA	promoter-TSS (NM_004387)	promoter-TSS (NM_004387)	87	NM_004387	1482	Hs.54473	NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
2.66001-32	chr13	95272462	95272961	+	0	NA	intron (NM_180989, intron 5 of 8)	intron (NM_180989, intron 5 of 8)	18607	NM_180989	160897	Hs.439363	NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
3.10691-5	chr13	113862754	113863253	+	0	NA	promoter-TSS (NM_001320655)	promoter-TSS (NM_001320655)	-5	NM_001278514	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
5.22879-20	chr1	31326876	31327375	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	54355	NM_014654	9672	Hs.158287	NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
1.30768-12	chr20	6032917	6033416	+	0	NA	exon (NM_152611, exon 2 of 5)	exon (NM_152611, exon 2 of 5)	1560	NM_152611	164312	Hs.149133	NM_152611	ENSG00000125872	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
1.10138-3	chr5	177659379	177659878	+	0	NA	non-coding (NR_103510, exon 1 of 14)	non-coding (NR_103510, exon 1 of 14)	195	NM_001278346	85007	Hs.248746	NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
2.58061-12	chr16	12008941	12009440	+	0	NA	intron (NM_001130007, intron 1 of 14)	CpG	635	NM_001130006	2935	Hs.528780	NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
9.50782-13	chr14	69388737	69389236	+	0	NA	intron (NM_001130005, intron 2 of 20)	intron (NM_001130005, intron 2 of 20)	57097	NM_001130005	87	Hs.235750	NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
3.00162-8	chr7	12107043	12107542	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-143556	NM_001134232	54664	Hs.396358	NM_018374	ENSG00000106460	TMEM106B	-	transmembrane protein 106B	protein-coding
8.53872-2	chr18	74844150	74844649	+	0	NA	intron (NM_001025100, intron 1 of 3)	CpG	375	NM_001025101	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
1.58015-3	chr16	75285348	75285847	+	0	NA	promoter-TSS (NM_001170717)	promoter-TSS (NM_001170717)	-71	NM_014567	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
3.10691-2	chr17	49031570	49032069	+	0	NA	Intergenic	Intergenic	-86480	NM_001243877	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
4.25969-3	chr14	100625784	100626283	+	0	NA	promoter-TSS (NM_206918)	promoter-TSS (NM_206918)	-21	NM_206918	123099	Hs.159643	NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
0.452752-2	chr8	113819041	113819540	+	0	NA	intron (NM_052900, intron 11 of 68)	LTR35|LTR|ERV1	163568	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	ncRNA
4.80172-3	chr6	36953966	36954465	+	0	NA	non-coding (NR_130739, exon 1 of 12)	non-coding (NR_130739, exon 1 of 12)	112	NM_014341	23787	Hs.485262	NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
3.85103-18	chr1	144491596	144492095	+	0	NA	intron (NM_001278267, intron 52 of 130)	CpG	120874	NR_003242	767846	Hs.657186	NR_003242	ENSG00000270392	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
0.79355-34	chr22	28206437	28206936	+	0	NA	Intergenic	Intergenic	-9200	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
4.25969-4	chr8	145136999	145137498	+	0	NA	promoter-TSS (NM_003801)	promoter-TSS (NM_003801)	-276	NM_003801	8733	Hs.627962	NM_003801	ENSG00000197858	GPAA1	GAA1|hGAA1	glycosylphosphatidylinositol anchor attachment 1	protein-coding
0.920515-13	chr6	140247096	140247595	+	0	NA	Intergenic	Intergenic	-50111	NR_121622	100507477	Hs.179213	NR_121622	ENSG00000236013	LOC100507477	-	uncharacterized LOC100507477	ncRNA
11.4752-2	chr2	160644630	160645129	+	0	NA	intron (NM_001198760, intron 33 of 37)	Tigger3a|DNA|TcMar-Tigger	9887	NM_001198763	9936	Hs.130014	NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
1.37869-19	chr19	5826417	5826916	+	0	NA	intron (NM_004558, intron 1 of 1)	intron (NM_004558, intron 1 of 1)	2853	NM_004558	4902	Hs.234775	NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
1.19186-22	chr13	53824383	53824882	+	0	NA	Intergenic	Intergenic	-98597	NR_125788	102723875	Hs.149083	NR_125788		LINC01065	-	long intergenic non-protein coding RNA 1065	ncRNA
7.61954-15	chr9	92762138	92762637	+	0	NA	Intergenic	Intergenic	23430	NR_036253	100422963		NR_036253	ENSG00000263967	MIR4290	-	microRNA 4290	ncRNA
2.82329-7	chr16	8165429	8165928	+	0	NA	Intergenic	SVA_D|Other|Other	422150	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
5.12862-10	chr2	151889077	151889576	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	229063	NM_198557	375287	Hs.302442	NM_198557	ENSG00000184898	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
10.5601	chr14	36325211	36325710	+	0	NA	intron (NM_032352, intron 4 of 9)	intron (NM_032352, intron 4 of 9)	29863	NM_032352	84312	Hs.525299	NM_032352	ENSG00000100916	BRMS1L	BRMS1	breast cancer metastasis-suppressor 1-like	protein-coding
0.680339-17	chr14	61927972	61928471	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	108691	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
17.8516-5	chr12	110400213	110400712	+	0	NA	intron (NM_001135213, intron 10 of 18)	intron (NM_001135213, intron 10 of 18)	33732	NM_001135213	9815	Hs.434996	NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
5.34617-2	chr8	8637101	8637600	+	0	NA	Intergenic	Intergenic	77684	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
0.872467-5	chrX	107556110	107556609	+	0	NA	intron (NM_001847, intron 2 of 44)	intron (NM_001847, intron 2 of 44)	125301	NM_001287759	1288	Hs.145586	NM_001847	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3|DFNX6	collagen type IV alpha 6 chain	protein-coding
3.8934-11	chr4	166033369	166033868	+	0	NA	intron (NM_001100389, intron 1 of 5)	CpG	406	NM_001100389	201931	Hs.704511	NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
4.53457-8	chr15	92548376	92548875	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	151095	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
4.76254-7	chr8	143705249	143705748	+	0	NA	Intergenic	Intergenic	-9665	NM_015193	23237	Hs.40888	NM_015193	ENSG00000198576	ARC	Arg3.1	activity regulated cytoskeleton associated protein	protein-coding
0.639892-4	chr3	107243833	107244332	+	0	NA	intron (NM_001276286, intron 1 of 16)	GC_rich|Low_complexity|Low_complexity	2299	NM_001276286	56987	Hs.124366	NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX, HMG-box containing	protein-coding
16.0555-2	chr2	240168378	240168877	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-51474	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
9.35542-6	chr18	57604881	57605380	+	0	NA	Intergenic	Intergenic	37938	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
0.0305075-49	chr5	156441600	156442099	+	0	NA	Intergenic	SVA_D|Other|Other	43403	NM_012206	26762	Hs.129711	NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
20.8513-2	chr5	122790633	122791132	+	0	NA	Intergenic	Intergenic	-31596	NM_153223	153241	Hs.483209	NM_153223	ENSG00000168944	CEP120	CCDC100|SRTD13	centrosomal protein 120	protein-coding
1.50581-19	chr3	120067880	120068379	+	0	NA	promoter-TSS (NM_001099678)	promoter-TSS (NM_001099678)	57	NM_001099678	116064	Hs.518084	NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
0.0392635-18	chr6	24774921	24775420	+	0	NA	promoter-TSS (NM_001251989)	promoter-TSS (NM_001251989)	11	NM_015895	51053	Hs.234896	NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin, DNA replication inhibitor	protein-coding
17.122	chr12	133128079	133128578	+	0	NA	intron (NM_001142641, intron 5 of 16)	intron (NM_001142641, intron 5 of 16)	-30255	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
0.788339-25	chr4	43133930	43134429	+	0	NA	Intergenic	Intergenic	238896	NM_001080476	389207	Hs.162559	NM_001080476	ENSG00000215203	GRXCR1	DFNB25|PPP1R88	glutaredoxin and cysteine rich domain containing 1	protein-coding
12.993-6	chr14	96828287	96828786	+	0	NA	intron (NM_018036, intron 1 of 41)	intron (NM_018036, intron 1 of 41)	1202	NM_018036	55102	Hs.168241	NM_018036	ENSG00000066739	ATG2B	C14orf103	autophagy related 2B	protein-coding
9.74694	chr17	19451000	19451499	+	0	NA	intron (NM_018242, intron 3 of 16)	intron (NM_018242, intron 3 of 16)	-9624	NR_003025	677885	Hs.658450	NR_003025	ENSG00000239149	SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
0.990869-6	chr11	126310857	126311356	+	0	NA	intron (NM_032531, intron 10 of 16)	intron (NM_032531, intron 10 of 16)	35029	NM_001254759	6484	Hs.591947	NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
1.82435-16	chr7	25299193	25299692	+	0	NA	Intergenic	Intergenic	-31337	NM_022150	64111	Hs.60473	NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
21.512	chr18	71559233	71559732	+	0	NA	Intergenic	Intergenic	255517	NM_152676	201456	Hs.664011	NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
0.0217692-20	chr2	45235725	45236224	+	0	NA	exon (NM_016932, exon 1 of 2)	exon (NM_016932, exon 1 of 2)	568	NM_016932	10736	Hs.101937	NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
0.0174066-6	chr12	109167506	109168005	+	0	NA	Intergenic	Intergenic	-42429	NM_014325	23603	Hs.330384	NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
3.9794-8	chr10	92969773	92970272	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-9886	NM_001256549	84333	Hs.500512	NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
0.0877392-10	chr14	55369750	55370249	+	0	NA	promoter-TSS (NM_000161)	promoter-TSS (NM_000161)	-457	NM_001024070	2643	Hs.86724	NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
1.44481-2	chr10	566265	566764	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	121204	NR_049884	100847086		NR_049884	ENSG00000263511	MIR5699	mir-5699	microRNA 5699	ncRNA
2.80669-14	chr11	123172286	123172785	+	0	NA	Intergenic	CpG	79685	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
1.22053-7	chr5	58335171	58335670	+	0	NA	promoter-TSS (NM_001197221)	promoter-TSS (NM_001197221)	-81	NM_001197221	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
11.1351-3	chrX	5920113	5920612	+	0	NA	intron (NM_001282145, intron 4 of 6)	intron (NM_001282145, intron 4 of 6)	-224037	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
12.0343-6	chr18	55469554	55470053	+	0	NA	intron (NM_005603, intron 1 of 27)	CpG	524	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
0.5061-20	chr6	68055830	68056329	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-709164	NR_125869	102723883	Hs.566528	NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
11.9382	chr4	130256957	130257456	+	0	NA	Intergenic	Intergenic	239924	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
2.95849-5	chr2	97466591	97467090	+	0	NA	intron (NM_020184, intron 5 of 6)	intron (NM_020184, intron 5 of 6)	2825	NR_036074	100422928		NR_036074	ENSG00000264157	MIR3127	mir-3127	microRNA 3127	ncRNA
3.94695-7	chr1	65731192	65732083	+	0	NA	intron (NM_014787, intron 1 of 18)	CpG	1260	NM_014787	9829	Hs.647643	NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
10.7624-7	chr4	5942124	5942623	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-17318	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	mir-378d-1	microRNA 378d-1	ncRNA
6.07303-8	chr11	6643416	6643915	+	0	NA	exon (NM_003737, exon 21 of 21)	exon (NM_003737, exon 21 of 21)	-2973	NM_000391	1200	Hs.523454	NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
23.1426-2	chrX	38496587	38497086	+	0	NA	intron (NM_004615, intron 1 of 7)	intron (NM_004615, intron 1 of 7)	76105	NM_004615	7102	Hs.441664	NM_004615	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b	tetraspanin 7	protein-coding
1.85087-5	chr22	30039270	30039769	+	0	NA	intron (NM_181833, intron 4 of 4)	SVA_D|Other|Other	39974	NM_181829	4771	Hs.187898	NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH	neurofibromin 2	protein-coding
1.53663-19	chr7	44529999	44530498	+	0	NA	5' UTR (NM_015332, exon 1 of 6)	5' UTR (NM_015332, exon 1 of 6)	137	NM_015332	23386	Hs.488171	NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
1.95861-4	chr3	43964575	43965074	+	0	NA	Intergenic	Intergenic	-190880	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
2.8735-4	chr2	25453045	25453544	+	0	NA	Intergenic	Intergenic	21706	NM_001320893	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
2.17527-5	chr5	138893012	138893511	+	0	NA	Intergenic	Intergenic	-30886	NM_198282	340061	Hs.379754	NM_198282	ENSG00000184584	TMEM173	ERIS|MITA|MPYS|NET23|SAVI|STING|hMITA|hSTING	transmembrane protein 173	protein-coding
3.79864-7	chr7	133162543	133163042	+	0	NA	intron (NM_001037126, intron 8 of 9)	intron (NM_001037126, intron 8 of 9)	187157	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
7.72113-15	chr2	36407790	36408289	+	0	NA	Intergenic	SVA_D|Other|Other	174674	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
0.209071-9	chr8	53626277	53626776	+	0	NA	intron (NM_001083617, intron 1 of 23)	CpG	500	NM_014781	9821	Hs.196102	NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
0.0305075-14	chr2	47795503	47796002	+	0	NA	intron (NM_022055, intron 1 of 1)	intron (NM_022055, intron 1 of 1)	1718	NM_022055	56660	Hs.591586	NM_022055	ENSG00000184261	KCNK12	K2p12.1|THIK-2|THIK2	potassium two pore domain channel subfamily K member 12	protein-coding
12.8233	chr10	119017185	119017684	+	0	NA	intron (NM_003054, intron 10 of 15)	intron (NM_003054, intron 10 of 15)	16850	NM_003054	6571	Hs.596992	NM_003054	ENSG00000165646	SLC18A2	SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
16.2893	chr1	151812074	151812573	+	0	NA	intron (NM_001136003, intron 1 of 1)	CpG	710	NM_001136003	100191040	Hs.694717	NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding
40.6854	chr10	81104358	81104857	+	0	NA	Intergenic	Intergenic	-2613	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
4.7237-14	chr4	57410731	57411230	+	0	NA	intron (NM_001256475, intron 1 of 8)	CpG	14205	NM_001256475	100506564	Hs.573073	NM_001256475	ENSG00000249693	THEGL	-	theg spermatid protein-like	protein-coding
2.30623-4	chr9	107321835	107322334	+	0	NA	Intergenic	L1PB1|LINE|L1	-9365	NM_001004483	138802	Hs.553599	NM_001004483	ENSG00000186943	OR13C8	OR37H|OR9-10	olfactory receptor family 13 subfamily C member 8	protein-coding
4.27128-13	chr12	68042452	68042951	+	0	NA	5' UTR (NM_006482, exon 1 of 3)	5' UTR (NM_006482, exon 1 of 3)	189	NM_003583	8445	Hs.173135	NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
10.6702	chr8	98877797	98878296	+	0	NA	Intergenic	Intergenic	-3203	NM_001317748	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
4.31798-4	chr21	42793299	42793798	+	0	NA	intron (NM_001144925, intron 1 of 18)	LTR5_Hs|LTR|ERVK	1063	NM_001144925	4599	Hs.517307	NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA	MX dynamin like GTPase 1	protein-coding
1.06793-10	chr2	65283575	65284074	+	0	NA	intron (NR_134966, intron 1 of 5)	CpG	329	NM_001319100	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
0.15923-26	chr3	40566094	40566593	+	0	NA	promoter-TSS (NM_001098414)	promoter-TSS (NM_001098414)	-26	NM_198484	285268	Hs.19977	NM_198484	ENSG00000172888	ZNF621	-	zinc finger protein 621	protein-coding
0.48177-29	chr9	35051267	35051766	+	0	NA	Intergenic	Intergenic	9047	NM_001287391	138724	Hs.148250	NM_203299	ENSG00000174038	C9orf131	-	chromosome 9 open reading frame 131	protein-coding
5.05845-3	chr9	82186376	82186875	+	0	NA	promoter-TSS (NM_001282748)	promoter-TSS (NM_001282748)	-63	NM_007005	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
4.37707-5	chr11	120894500	120894999	+	0	NA	promoter-TSS (NM_001130047)	promoter-TSS (NM_001130047)	-54	NM_001130047	219899	Hs.504136	NM_152715	ENSG00000154114	TBCEL	El|LRRC35	tubulin folding cofactor E like	protein-coding
0.783135-25	chr6	158552907	158553406	+	0	NA	intron (NM_032861, intron 8 of 16)	intron (NM_032861, intron 8 of 16)	36156	NM_032861	84947	Hs.154706	NM_032861	ENSG00000122335	SERAC1	-	serine active site containing 1	protein-coding
5.67031-2	chr15	39522635	39523134	+	0	NA	Intergenic	Intergenic	-19986	NM_207445	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
0.872467	chr9	1051793	1052292	+	0	NA	exon (NM_181872, exon 2 of 4)	exon (NM_181872, exon 2 of 4)	1422	NM_181872	10655	Hs.59506	NM_006557	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
0.700704-11	chr4	89978073	89978572	+	0	NA	promoter-TSS (NM_014883)	promoter-TSS (NM_014883)	24	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
11.8243	chr10	105836522	105837021	+	0	NA	intron (NM_000494, intron 4 of 55)	intron (NM_000494, intron 4 of 55)	8867	NM_000494	1308	Hs.117938	NM_000494	ENSG00000065618	COL17A1	BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1	collagen type XVII alpha 1 chain	protein-coding
9.17215-20	chr9	112171092	112171591	+	0	NA	intron (NM_001145369, intron 11 of 20)	MER58A|DNA|hAT-Charlie	8722	NR_026918	5774	Hs.436429	NM_002829	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
2.29885-9	chr8	22014267	22014766	+	0	NA	promoter-TSS (NM_139278)	promoter-TSS (NM_139278)	-172	NM_139278	203190	Hs.33470	NM_139278	ENSG00000168481	LGI3	LGIL4	leucine rich repeat LGI family member 3	protein-coding
7.90485-12	chr18	60104599	60105098	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	-85810	NM_017742	54877	Hs.114191	NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
5.27244	chr18	31803359	31803858	+	0	NA	promoter-TSS (NM_001198548)	promoter-TSS (NM_001198548)	-93	NM_003787	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
22.233-2	chr3	83927037	83927536	+	0	NA	Intergenic	Intergenic	991440	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
0.310503-7	chr3	59594029	59594528	+	0	NA	Intergenic	Intergenic	472575	NM_001320901	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
1.70053-26	chr17	70382703	70383202	+	0	NA	Intergenic	Intergenic	44000	NR_135222	146795	Hs.651743	NR_135222	ENSG00000264026	LINC02003	-	long intergenic non-protein coding RNA 2003	ncRNA
4.76254-10	chr8	117778929	117779428	+	0	NA	intron (NM_032334, intron 1 of 2)	intron (NM_032334, intron 1 of 2)	436	NM_032334	84294	Hs.86970	NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23, small subunit processome component	protein-coding
0.264104-10	chr7	106061855	106062354	+	0	NA	Intergenic	MIR|SINE|MIR	-136466	NM_005746	10135	Hs.489615	NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
2.94136-4	chr13	59999369	59999868	+	0	NA	Intergenic	Intergenic	-587234	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
22.8567-3	chr8	74226516	74227357	+	0	NA	intron (NR_125388, intron 5 of 5)	intron (NR_125388, intron 5 of 5)	20099	NM_172037	157506	Hs.244940	NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding
5.70248-9	chr18	2976092	2976591	+	0	NA	intron (NM_014646, intron 1 of 19)	intron (NM_014646, intron 1 of 19)	-29720	NR_026659	727896	Hs.673126	NR_026659		LOC727896	-	cysteine and histidine rich domain containing 1 pseudogene	pseudo
10.2549-3	chr9	34475216	34475715	+	0	NA	intron (NM_001281428, intron 1 of 19)	intron (NM_001281428, intron 1 of 19)	16715	NM_012144	27019	Hs.112667	NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD	dynein axonemal intermediate chain 1	protein-coding
0.245682-38	chr17	55333606	55334105	+	0	NA	promoter-TSS (NM_001322251)	promoter-TSS (NM_001322251)	-76	NM_138962	124540	Hs.658922	NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
2.04815	chr1	218633173	218633672	+	0	NA	intron (NR_031644, intron 2 of 6)	intron (NR_031644, intron 2 of 6)	17454	NR_125715	103611157	Hs.133379	NR_125715	ENSG00000281453	TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
40.4672	chr3	25519687	25520186	+	0	NA	intron (NM_001290217, intron 2 of 7)	MamRep137|DNA|TcMar?	20135	NM_001290217	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
14.8545	chr3	143462988	143463487	+	0	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	104136	NM_173653	285195	Hs.302257	NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
2.57275-9	chr14	88490716	88491215	+	0	NA	promoter-TSS (NR_046094)	promoter-TSS (NR_046094)	71	NR_046094	283587	Hs.525513	NR_046094	ENSG00000258867	LINC01146	-	long intergenic non-protein coding RNA 1146	ncRNA
1.15771-18	chr16	58162544	58163043	+	0	NA	intron (NM_013242, intron 1 of 5)	CpG	503	NM_013242	29105	Hs.532755	NM_013242	ENSG00000070761	CFAP20	C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
0.486625-16	chr6	52516766	52517265	+	0	NA	Intergenic	L1MD2|LINE|L1	-12184	NR_024403	730101	Hs.7921	NR_024403	ENSG00000216775	LOC730101	-	uncharacterized LOC730101	ncRNA
4.67246-13	chr2	165698862	165699361	+	0	NA	promoter-TSS (NM_001278458)	promoter-TSS (NM_001278458)	-433	NM_001278460	22837	Hs.470457	NM_014900	ENSG00000082438	COBLL1	COBLR1	cordon-bleu WH2 repeat protein like 1	protein-coding
0.070049-31	chr4	77617206	77617705	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	120751	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
0.34328-11	chr6	66416928	66417427	+	0	NA	promoter-TSS (NM_001142800)	promoter-TSS (NM_001142800)	-59	NM_001142801	346007	Hs.25067	NM_198283	ENSG00000188107	EYS	C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1	eyes shut homolog (Drosophila)	protein-coding
1.82435-5	chr8	82276710	82277209	+	0	NA	Intergenic	Intergenic	82760	NM_002677	5375	Hs.571512	NM_002677	ENSG00000147588	PMP2	FABP8|M-FABP|MP2|P2	peripheral myelin protein 2	protein-coding
15.0307	chr9	112723507	112724006	+	0	NA	intron (NM_147150, intron 6 of 9)	intron (NM_147150, intron 6 of 9)	-87122	NM_001004065	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding
3.30683-12	chr7	148553328	148553827	+	0	NA	intron (NM_001203248, intron 1 of 19)	L1MC3|LINE|L1	27024	NM_001203249	2146	Hs.444082	NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
2.05512-6	chr3	15325581	15326080	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	30139	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
1.53663-39	chr16	53573686	53574185	+	0	NA	Intergenic	SVA_D|Other|Other	-36719	NM_001308325	64400	Hs.380897	NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
0.268721-14	chr17	8277458	8277957	+	0	NA	intron (NM_001304947, intron 1 of 1)	SVA_B|Other|Other	2322	NM_001304947	124751	Hs.304604	NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
0.315171-19	chr6	138483173	138483672	+	0	NA	intron (NM_020340, intron 1 of 33)	CpG	369	NM_020340	57221	Hs.194408	NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding
6.32644-6	chr7	148308599	148309098	+	0	NA	intron (NM_145304, intron 1 of 2)	LTR1B|LTR|ERV1	21191	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
10.752	chr1	40635829	40636328	+	0	NA	intron (NM_012421, intron 1 of 7)	AluJb|SINE|Alu	9037	NM_012421	6018	Hs.205627	NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	rearranged L-myc fusion	protein-coding
4.65974-4	chr4	96282015	96282514	+	0	NA	intron (NM_003728, intron 1 of 15)	intron (NM_003728, intron 1 of 15)	188097	NM_003728	8633	Hs.388565	NM_003728	ENSG00000182168	UNC5C	UNC5H3	unc-5 netrin receptor C	protein-coding
0.376307-18	chr2	208195525	208196024	+	0	NA	Intergenic	Intergenic	-61626	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
10.1909-2	chr1	212005180	212005679	+	0	NA	intron (NR_135818, intron 2 of 2)	intron (NR_135818, intron 2 of 2)	1126	NR_135820	102723727	Hs.147656	NR_135818	ENSG00000229258	LOC102723727	-	uncharacterized LOC102723727	ncRNA
28.2102	chr1	223101468	223101967	+	0	NA	intron (NM_032890, intron 2 of 9)	intron (NM_032890, intron 2 of 9)	113286	NM_032890	84976	Hs.528817	NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
12.1968-7	chr15	84041328	84041827	+	0	NA	Intergenic	Intergenic	-74403	NM_001324183	6457	Hs.270055	NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
2.66001-20	chr3	128880855	128881354	+	0	NA	Intergenic	Intergenic	-1031	NM_020701	57461	Hs.512661	NM_020701	ENSG00000240682	ISY1	FSAP33	ISY1 splicing factor homolog	protein-coding
9.31814-2	chr3	179667847	179668346	+	0	NA	intron (NM_001256750, intron 1 of 14)	L1PA5|LINE|L1	23912	NM_001256756	51555	Hs.235331	NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding
0.8302-14	chr3	159599521	159600020	+	0	NA	intron (NM_001197113, intron 6 of 10)	MLT1H|LTR|ERVL-MaLR	42120	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
0.675262-29	chr7	95951308	95951807	+	0	NA	promoter-TSS (NM_001160210)	promoter-TSS (NM_001160210)	-98	NR_027662	10165	Hs.489190	NM_014251	ENSG00000004864	SLC25A13	ARALAR2|CITRIN|CTLN2	solute carrier family 25 member 13	protein-coding
4.7237-20	chr1	74059014	74059513	+	0	NA	Intergenic	Intergenic	287410	NR_110677	101927295	Hs.436589	NR_110676	ENSG00000233973	LINC01360	-	long intergenic non-protein coding RNA 1360	ncRNA
28.2102-3	chr7	66927787	66928286	+	0	NA	Intergenic	Intergenic	127073	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
2.82329-25	chr15	66678827	66679326	+	0	NA	promoter-TSS (NM_002755)	promoter-TSS (NM_002755)	-135	NM_002755	5604	Hs.145442	NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
1.46302-7	chr5	104917901	104918400	+	0	NA	Intergenic	L1PB1|LINE|L1	482975	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
0.25028-11	chr3	149689210	149689709	+	0	NA	promoter-TSS (NM_053024)	promoter-TSS (NM_053024)	393	NR_036538	646903	Hs.632559	NR_036538		LOC646903	-	uncharacterized LOC646903	ncRNA
0.0130484-24	chr2	151341667	151342166	+	0	NA	intron (NM_005168, intron 3 of 5)	CpG	2293	NM_001254738	390	Hs.6838	NM_005168	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
0.655015-5	chr14	60716943	60717442	+	0	NA	5' UTR (NM_177951, exon 2 of 4)	5' UTR (NM_177951, exon 2 of 4)	1226	NM_021003	5494	Hs.130036	NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
21.8376	chr18	68948815	68949314	+	0	NA	Intergenic	LTR9|LTR|ERV1	297128	NR_038326	100505776	Hs.202072	NR_038325	ENSG00000260676	LINC01541	UTAT39	long intergenic non-protein coding RNA 1541	ncRNA
4.38899-7	chr3	133014025	133014524	+	0	NA	intron (NM_001282865, intron 2 of 3)	MIRc|SINE|MIR	-38309	NR_110812	101927455	Hs.570550	NR_110812	ENSG00000251011	TMEM108-AS1	-	TMEM108 antisense RNA 1	ncRNA
8.66461-11	chr9	38404211	38404710	+	0	NA	Intergenic	Intergenic	11799	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
12.5104-3	chr6	9455916	9456415	+	0	NA	Intergenic	Intergenic	803723	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
0.136762-7	chr4	136339399	136339898	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	469600	NR_103762	100507528	Hs.518987	NR_103762	ENSG00000248330	LINC00613	-	long intergenic non-protein coding RNA 613	ncRNA
0.599818-35	chr3	183851761	183852260	+	0	NA	promoter-TSS (NM_003907)	promoter-TSS (NM_003907)	-800	NM_003907	8893	Hs.283551	NM_003907	ENSG00000145191	EIF2B5	CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM	eukaryotic translation initiation factor 2B subunit epsilon	protein-coding
2.49492-3	chr5	157897917	157898416	+	0	NA	Intergenic	Intergenic	-61385	NR_109888	101927697	Hs.483960	NR_109888	ENSG00000276778	LOC101927697	-	uncharacterized LOC101927697	ncRNA
1.97911-8	chr18	58081295	58081794	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-41543	NM_005912	4160	Hs.532833	NM_005912	ENSG00000166603	MC4R	-	melanocortin 4 receptor	protein-coding
0.491485-5	chr6	15509021	15509520	+	0	NA	intron (NM_004973, intron 12 of 17)	intron (NM_004973, intron 12 of 17)	154019	NM_032122	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
1.63043	chr16	58027154	58027653	+	0	NA	Intergenic	Intergenic	-6100	NM_001330568	79650	Hs.408702	NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
0.163737-22	chr20	61887536	61888035	+	0	NA	non-coding (NR_024389, exon 1 of 1)	non-coding (NR_024389, exon 1 of 1)	-1893	NM_152864	128414	Hs.46627	NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	Sodium/potassium transporting ATPase interacting 4	protein-coding
3.77786-4	chr11	118493885	118494384	+	0	NA	intron (NM_001144758, intron 4 of 22)	intron (NM_001144758, intron 4 of 22)	15828	NM_001144758	23187	Hs.504062	NM_015157	ENSG00000019144	PHLDB1	LL5A	pleckstrin homology like domain family B member 1	protein-coding
7.9588-9	chr8	144654774	144655273	+	0	NA	promoter-TSS (NM_001100878)	promoter-TSS (NM_001100878)	-95	NM_001100878	642475	Hs.531406	NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
3.01899	chr20	15127456	15127955	+	0	NA	intron (NM_080676, intron 5 of 16)	intron (NM_080676, intron 5 of 16)	-49799	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
4.36519-23	chr6	127718321	127718820	+	0	NA	Intergenic	LTR14B|LTR|ERVK	-53816	NM_018479	55862	Hs.486410	NM_018479	ENSG00000093144	ECHDC1	HEL-S-76|MMCD|dJ351K20.2	ethylmalonyl-CoA decarboxylase 1	protein-coding
29.1009	chr5	37938126	37938625	+	0	NA	Intergenic	Intergenic	-10218	NR_134262	105374729	Hs.150642	NR_134262	ENSG00000251518	LINC02110	-	long intergenic non-protein coding RNA 2110	ncRNA
9.10095-8	chr12	28093643	28094142	+	0	NA	Intergenic	Intergenic	29002	NM_198964	5744	Hs.591159	NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
0.296531-127	chr9_gl000199_random	137973	138472	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
7.4958-11	chr6	87948348	87948847	+	0	NA	intron (NM_015021, intron 5 of 7)	SVA_C|Other|Other	83328	NM_015021	23036	Hs.485892	NM_015021	ENSG00000188994	ZNF292	Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
3.64516-12	chr9	136242787	136243286	+	0	NA	promoter-TSS (NR_103997)	promoter-TSS (NR_103997)	1	NM_001280791	6836	Hs.512465	NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
0.665127-9	chr2	238803219	238803718	+	0	NA	intron (NM_001308353, intron 3 of 3)	intron (NM_001308353, intron 3 of 3)	35281	NM_001308353	10267	Hs.471783	NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
2.94136	chr4	125200887	125201386	+	0	NA	Intergenic	Intergenic	278453	NR_110838	101927087	Hs.518966	NR_110838	ENSG00000261083	LOC101927087	-	uncharacterized LOC101927087	ncRNA
1.37869-34	chr5	32041485	32041984	+	0	NA	intron (NM_178140, intron 7 of 24)	SVA_A|Other|Other	-105469	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
4.81486-5	chr7	129984872	129985371	+	0	NA	intron (NM_001127442, intron 1 of 10)	intron (NM_001127442, intron 1 of 10)	491	NM_001318223	93979	Hs.567642	NM_080385	ENSG00000158525	CPA5	-	carboxypeptidase A5	protein-coding
4.42493-11	chr13	103499765	103500264	+	0	NA	intron (NM_000123, intron 1 of 14)	intron (NM_000123, intron 1 of 14)	1823	NM_000123	2073	Hs.258429	NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
1.96543-3	chr14	55768306	55768805	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	29683	NM_152231	55030	Hs.525348	NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
1.41463-15	chr10	115323074	115323573	+	0	NA	intron (NM_004132, intron 1 of 12)	intron (NM_004132, intron 1 of 12)	10586	NM_004132	3026	Hs.422542	NM_004132	ENSG00000148702	HABP2	FSAP|HABP|HGFAL|NMTC5|PHBP	hyaluronan binding protein 2	protein-coding
15.6543-2	chr6	36099270	36099769	+	0	NA	intron (NR_072996, intron 2 of 9)	intron (NR_072996, intron 2 of 9)	1258	NM_002754	5603	Hs.178695	NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
2.80669-13	chr8	29815794	29816293	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1179	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
1.51195-30	chr3	127842258	127842757	+	0	NA	exon (NM_001319084, exon 1 of 10)	exon (NM_001319084, exon 1 of 10)	164	NM_003707	8607	Hs.272822	NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
3.41035-19	chr1	110785869	110786652	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	32924	NM_004978	3749	Hs.153521	NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
33.7366	chr2	192087136	192087635	+	0	NA	Intergenic	LTR86B1|LTR|ERVL	-22617	NM_001161819	4430	Hs.439620	NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
1.11259-8	chr3	158508967	158509466	+	0	NA	Intergenic	Intergenic	-10499	NM_001167903	64747	Hs.58663	NM_022736	ENSG00000118855	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
0.400052-11	chr1	78148274	78148773	+	0	NA	promoter-TSS (NM_015534)	promoter-TSS (NM_015534)	-180	NM_015534	26009	Hs.480506	NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
2.48721-12	chr2	172750673	172751172	+	0	NA	promoter-TSS (NM_003705)	promoter-TSS (NM_003705)	-106	NR_047549	8604	Hs.470608	NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|EIEE39	solute carrier family 25 member 12	protein-coding
0.589858-36	chr6	74224086	74224585	+	0	NA	Intergenic	AluSc8|SINE|Alu	3826	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
16.2709	chr3	176505273	176505772	+	0	NA	Intergenic	MER61D|LTR|ERV1	29267	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
3.80907-5	chr2	7200260	7200759	+	0	NA	Intergenic	Intergenic	17502	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
4.19075-9	chr7	35734990	35735489	+	0	NA	promoter-TSS (NM_022373)	promoter-TSS (NM_022373)	423	NR_136255	101930085	Hs.599851	NR_136255	ENSG00000271122	LOC101930085	-	uncharacterized LOC101930085	ncRNA
0.680339-12	chr1	117911230	117911729	+	0	NA	intron (NM_006699, intron 1 of 12)	intron (NM_006699, intron 1 of 12)	1394	NM_006699	10905	Hs.435938	NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
0.619809-6	chr16	58061358	58061857	+	0	NA	intron (NM_002428, intron 1 of 9)	intron (NM_002428, intron 1 of 9)	2137	NM_002428	4324	Hs.80343	NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
26.6555	chr3	139812621	139813120	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	158843	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
0.123337-47	chr4	48965028	48965527	+	0	NA	Intergenic	Intergenic	-22988	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
0.985417-6	chr7	81991496	81991995	+	0	NA	intron (NM_000722, intron 1 of 38)	intron (NM_000722, intron 1 of 38)	81377	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
4.14539	chr4	86744452	86744951	+	0	NA	intron (NM_001042669, intron 1 of 7)	intron (NM_001042669, intron 1 of 7)	-4345	NM_001287805	83478	Hs.444229	NM_031305	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
3.26979-2	chr1	33529080	33529579	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-17385	NM_001293562	113451	Hs.101807	NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
11.4086	chr9	86594323	86594822	+	0	NA	intron (NM_031262, intron 1 of 16)	CpG	614	NM_001318186	3190	Hs.522257	NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
1.73925-15	chr10	36173462	36173961	+	0	NA	Intergenic	Intergenic	106481	NR_110138	102578074		NR_110138	ENSG00000280719	PCAT5	LINC01452|TPCAT-10-36067	prostate cancer associated transcript 5 (non-protein coding)	ncRNA
4.92144-12	chr2	241759758	241760257	+	0	NA	promoter-TSS (NM_001320705)	promoter-TSS (NM_001320705)	-282	NM_004321	547	Hs.516802	NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
1.67491	chr9	72287867	72288366	+	0	NA	promoter-TSS (NM_001163)	promoter-TSS (NM_001163)	-841	NM_001163	320	Hs.171939	NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
4.73661	chr19	42800155	42800654	+	0	NA	TTS (NM_001304815)	TTS (NM_001304815)	-5880	NM_199285	284338	Hs.585901	NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
1.77178	chr19	45908791	45909290	+	0	NA	promoter-TSS (NM_012099)	promoter-TSS (NM_012099)	-427	NM_001297590	10849	Hs.710495	NM_012099	ENSG00000117877	CD3EAP	ASE-1|ASE1|CAST|PAF49	CD3e molecule associated protein	protein-coding
15.391-2	chr20	36573740	36574239	+	0	NA	TTS (NM_080607)	TTS (NM_080607)	42490	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
2.13959-13	chr2	30734490	30734989	+	0	NA	intron (NM_001304445, intron 3 of 7)	HAL1|LINE|L1	64647	NM_001304446	253558	Hs.468048	NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
0.25028-6	chr6	147193170	147193669	+	0	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-68459	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
8.06875	chrX	130461707	130462206	+	0	NA	Intergenic	SVA_D|Other|Other	-38553	NM_001170961	3547	Hs.22111	NM_001555	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	immunoglobulin superfamily member 1	protein-coding
2.83162-8	chr9	6948419	6948918	+	0	NA	intron (NM_015061, intron 8 of 21)	SVA_C|Other|Other	191027	NR_130707	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
0.675262-17	chr1	243893646	243894145	+	0	NA	intron (NM_001206729, intron 2 of 13)	MER52A|LTR|ERV1	112689	NM_181690	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
2.54145-11	chr3	9895815	9896314	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10362	NM_001142547	285367	Hs.33719	NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridylate synthase domain containing 3	protein-coding
0.15923-20	chr10	27389384	27389883	+	0	NA	promoter-TSS (NM_001256053)	promoter-TSS (NM_001256053)	-206	NM_014915	22852	Hs.361041	NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain 26	protein-coding
1.88425-17	chr2	200323902	200324401	+	0	NA	intron (NM_001172517, intron 2 of 11)	CpG-15850	-1332	NR_134967	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
2.62013-15	chr14	83294065	83294564	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-1204909	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
9.87163-7	chr20	47219866	47220365	+	0	NA	Intergenic	Intergenic	224305	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
60.4624-3	chr14	21072065	21072947	+	0	NA	intron (NR_122043, intron 4 of 4)	HERVL18-int|LTR|ERVL	-13524	NM_001024822	493901	Hs.729466	NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
5.54396-6	chr5	68710790	68711289	+	0	NA	promoter-TSS (NM_001244734)	promoter-TSS (NM_001244734)	100	NM_001038603	153562	Hs.657687	NM_144724	ENSG00000152939	MARVELD2	DFNB49|MARVD2|MRVLDC2|Tric	MARVEL domain containing 2	protein-coding
17.8781-2	chr2	238583345	238583844	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-17213	NM_001137551	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
1.54282-14	chr20	4065856	4066355	+	0	NA	Intergenic	Intergenic	-63321	NM_001270691	54498	Hs.433337	NM_175839	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
0.329203-14	chr3	127293778	127294277	+	0	NA	TTS (NR_106883)	TTS (NR_106883)	147	NR_106883	102466199		NR_106883	ENSG00000275067	MIR6825	hsa-mir-6825	microRNA 6825	ncRNA
1.19186-25	chr3	128336382	128336881	+	0	NA	Intergenic	CpG	33088	NM_002950	6184	Hs.518244	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
0.746879-4	chr21	42218652	42219151	+	0	NA	non-coding (NR_073202, exon 1 of 33)	non-coding (NR_073202, exon 1 of 33)	138	NR_073202	1826	Hs.397800	NM_001389	ENSG00000171587	DSCAM	CHD2|CHD2-42|CHD2-52	DS cell adhesion molecule	protein-coding
0.101054-41	chr13	30969490	30969989	+	0	NA	Intergenic	Intergenic	-21688	NR_024464	100188949	Hs.439791	NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
3.85103-31	chr1	180123698	180124547	+	0	NA	exon (NM_002826, exon 1 of 12)	exon (NM_002826, exon 1 of 12)	154	NM_001004128	5768	Hs.744925	NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
0.94744-21	chr15	65597165	65597664	+	0	NA	Intergenic	AluSz|SINE|Alu	-18233	NM_017851	54956	Hs.30634	NM_017851	ENSG00000138617	PARP16	ARTD15|C15orf30|pART15	poly(ADP-ribose) polymerase family member 16	protein-coding
0.315171-11	chr13	96032846	96033345	+	0	NA	Intergenic	MER66C|LTR|ERV1	-52758	NM_001160100	9071	Hs.534377	NM_006984	ENSG00000134873	CLDN10	CPETRL3|OSP-L	claudin 10	protein-coding
3.99027-3	chr12	27486252	27486751	+	0	NA	intron (NM_001248005, intron 1 of 13)	CpG	714	NM_001248003	56938	Hs.445447	NM_020183	ENSG00000029153	ARNTL2	BMAL2|CLIF|MOP9|PASD9|bHLHe6	aryl hydrocarbon receptor nuclear translocator like 2	protein-coding
0.245682-25	chr3	197687175	197687674	+	0	NA	promoter-TSS (NM_001323028)	promoter-TSS (NM_001323028)	353	NR_026787	89782	Hs.518540	NM_033029	ENSG00000185621	LMLN	GP63|INV|IX14|MSP	leishmanolysin like peptidase	protein-coding
0.254883-6	chr11	63684602	63685101	+	0	NA	promoter-TSS (NM_173587)	promoter-TSS (NM_173587)	-535	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
0.550241-32	chr2	70142411	70142910	+	0	NA	intron (NM_002357, intron 1 of 5)	CpG	487	NM_001202514	4084	Hs.468908	NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
2.44125-9	chr1	44457055	44457554	+	0	NA	promoter-TSS (NM_152499)	promoter-TSS (NM_152499)	24	NM_152499	149473	Hs.632394	NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
6.16185-18	chr13	102228782	102229281	+	0	NA	intron (NM_001271754, intron 3 of 10)	intron (NM_001271754, intron 3 of 10)	86728	NM_001271756	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
9.78811-8	chr20	33950926	33951425	+	0	NA	intron (NM_199487, intron 6 of 8)	intron (NM_199487, intron 6 of 8)	48770	NM_001184977	55245	Hs.726290	NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
0.629839-18	chr17	40075133	40075946	+	0	NA	promoter-TSS (NM_001303274)	promoter-TSS (NM_001303274)	-264	NM_001303275	47	Hs.387567	NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
0.530567-4	chr6	31869903	31870402	+	0	NA	promoter-TSS (NM_181842)	promoter-TSS (NM_181842)	-383	NM_181842	221527	Hs.234027	NM_181842	ENSG00000204366	ZBTB12	Bat9|C6orf46|D6S59E|G10|NG35	zinc finger and BTB domain containing 12	protein-coding
18.729-3	chr18	74409468	74409967	+	0	NA	Intergenic	Intergenic	7731	NR_122073	400661	Hs.514963	NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
1.58015-7	chr4_gl000193_random	78655	79154	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	9471	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
0.385789-28	chr14	46699657	46700156	+	0	NA	intron (NR_102702, intron 3 of 3)	intron (NR_102702, intron 3 of 3)	166544	NR_102701	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
0.11441-11	chr17	34091081	34091580	+	0	NA	exon (NM_145272, exon 2 of 3)	exon (NM_145272, exon 2 of 3)	3414	NM_145272	146853	Hs.127194	NM_145272	ENSG00000270806	C17orf50	-	chromosome 17 open reading frame 50	protein-coding
0.381045-12	chr8	6754246	6754745	+	0	NA	Intergenic	Intergenic	-18966	NM_005218	1672	Hs.32949	NM_005218	ENSG00000164825	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin beta 1	protein-coding
18.7615-3	chr1	166458780	166459663	+	0	NA	Intergenic	Intergenic	-113932	NR_002925	116123	Hs.348539	NM_138784	ENSG00000215834	FMO9P	-	flavin containing monooxygenase 9 pseudogene	pseudo
0.535477-15	chr6	136486975	136487474	+	0	NA	intron (NM_018945, intron 8 of 12)	intron (NM_018945, intron 8 of 12)	84249	NM_138419	113115	Hs.121536	NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
1.89767-19	chr16	70624260	70624759	+	0	NA	intron (NM_001172771, intron 1 of 6)	intron (NM_001172771, intron 1 of 6)	10711	NM_152456	146433	Hs.461214	NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
0.209071-25	chrX	15872765	15873264	+	0	NA	5' UTR (NM_003916, exon 1 of 5)	5' UTR (NM_003916, exon 1 of 5)	123	NM_003916	8905	Hs.121592	NM_003916	ENSG00000182287	AP1S2	DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor related protein complex 1 sigma 2 subunit	protein-coding
0.680339-8	chr2	17759610	17760109	+	0	NA	intron (NM_003385, intron 1 of 3)	intron (NM_003385, intron 1 of 3)	38052	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin like 1	protein-coding
10.8513	chr20	61411720	61412219	+	0	NA	Intergenic	MER67C|LTR|ERV1	-3761	NR_046224	100652730	Hs.254951	NR_046224		LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
12.1968	chr6	106993800	106994299	+	0	NA	intron (NM_001624, intron 11 of 19)	MLT1K|LTR|ERVL-MaLR	34319	NM_001624	202	Hs.724262	NM_001624	ENSG00000112297	AIM1	CRYBG1|ST4	absent in melanoma 1	protein-coding
2.29148-7	chr22	41864655	41865154	+	0	NA	promoter-TSS (NM_001098)	promoter-TSS (NM_001098)	-196	NM_032758	84844	Hs.474980	NM_032758	ENSG00000100410	PHF5A	INI|Rds3|SAP14b|SF3B7|SF3b14b|bK223H9.2	PHD finger protein 5A	protein-coding
8.44664-5	chr2	163357393	163357892	+	0	NA	intron (NM_173162, intron 5 of 7)	intron (NM_173162, intron 5 of 7)	156751	NM_001330271	25801	Hs.377894	NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
2.58848-2	chr9	37079399	37079898	+	0	NA	promoter-TSS (NR_036592)	promoter-TSS (NR_036592)	-245	NR_036592	100506710	Hs.446271	NR_036592	ENSG00000281649	EBLN3P	EBLN3	endogenous Bornavirus-like nucleoprotein 3, pseudogene	pseudo
3.56547-9	chr19	56166575	56167074	+	0	NA	intron (NM_001012478, intron 1 of 11)	CpG-14459	1408	NM_001012478	11338	Hs.528007	NM_007279	ENSG00000063244	U2AF2	U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
2.49492-4	chr17	40950466	40950965	+	0	NA	promoter-TSS (NM_173478)	promoter-TSS (NM_173478)	28	NM_001040431	28958	Hs.16059	NM_001040431	ENSG00000183978	COA3	CCDC56|COX25|HSPC009|MITRAC12	cytochrome c oxidase assembly factor 3	protein-coding
0.899095-5	chrX	17565736	17566235	+	0	NA	intron (NR_135631, intron 1 of 1)	MLT1H2|LTR|ERVL-MaLR	11263	NR_046632	100873920	Hs.584577	NR_046632		NHS-AS1	-	NHS antisense RNA 1	ncRNA
9.24453-20	chr11	9594868	9595367	+	0	NA	promoter-TSS (NM_003390)	promoter-TSS (NM_003390)	-111	NM_003390	7465	Hs.249441	NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
3.77786-3	chr3	111793473	111794206	+	0	NA	intron (NM_001042575, intron 12 of 15)	intron (NM_001042575, intron 12 of 15)	-11343	NM_024616	79669	Hs.434247	NM_024616	ENSG00000114529	C3orf52	TTMP	chromosome 3 open reading frame 52	protein-coding
2.38824-4	chr2	17699683	17700182	+	0	NA	promoter-TSS (NM_001099218)	promoter-TSS (NM_001099218)	-226	NM_001099218	729475	Hs.515802	NM_001099218	ENSG00000214842	RAD51AP2	-	RAD51 associated protein 2	protein-coding
1.4691-12	chr7	72350369	72350868	+	0	NA	intron (NM_001257190, intron 1 of 15)	CpG	712	NM_001257190	9883	Hs.655217	NM_172020	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
0.105502-4	chr17	78549136	78549635	+	0	NA	intron (NM_001163034, intron 1 of 29)	intron (NM_001163034, intron 1 of 29)	30760	NM_020761	57521	Hs.133044	NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
9.66576-13	chr9	140140150	140140649	+	0	NA	intron (NM_001001710, intron 1 of 6)	MIRb|SINE|MIR	1845	NM_001001710	401565	Hs.522530	NM_001001710	ENSG00000188163	FAM166A	HSD46	family with sequence similarity 166 member A	protein-coding
0.877779-21	chr1	79083164	79083663	+	0	NA	Intergenic	LTR41|LTR|ERVL	-2654	NM_006820	10964	Hs.744918	NM_006820	ENSG00000137959	IFI44L	C1orf29|GS3686	interferon induced protein 44 like	protein-coding
3.83-5	chr13	77903112	77903611	+	0	NA	Intergenic	Intergenic	-2184	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|Phr	MYC binding protein 2, E3 ubiquitin protein ligase	protein-coding
0.366845-4	chr2	207630187	207630686	+	0	NA	promoter-TSS (NR_104261)	promoter-TSS (NR_104261)	-163	NM_001330223	130752	Hs.147816	NM_206892	ENSG00000138400	MDH1B	RP11-95H11	malate dehydrogenase 1B	protein-coding
13.0627-4	chr11	134255924	134256423	+	0	NA	intron (NM_018644, intron 3 of 6)	intron (NM_018644, intron 3 of 6)	25639	NM_018644	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
0.0921731-19	chr1	15394	15893	+	0	NA	intron (NR_024540, intron 9 of 10)	intron (NR_024540, intron 9 of 10)	1793	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
2.54925	chr6	78359946	78360445	+	0	NA	5' UTR (NM_001282136, exon 1 of 5)	5' UTR (NM_001282136, exon 1 of 5)	204	NM_001282136	101928601	Hs.544538	NM_001282136	ENSG00000269964	MEI4	-	meiotic double-stranded break formation protein 4	protein-coding
8.96196-15	chr16	146878	147377	+	0	NA	intron (NM_001039476, intron 6 of 11)	intron (NM_001039476, intron 6 of 11)	18958	NM_002434	4350	Hs.459596	NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
10.5208	chr15	92544624	92545123	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	147343	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
10.4239-4	chr2	11538761	11539260	+	0	NA	intron (NR_047499, intron 1 of 2)	ERV3-16A3_I-int|LTR|ERVL	4903	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	ncRNA
6.19789-5	chrX	84824653	84825152	+	0	NA	Intergenic	Intergenic	-190154	NM_024921	79983	Hs.267038	NM_024921	ENSG00000124429	POF1B	POF|POF2B	premature ovarian failure, 1B	protein-coding
1.33122-25	chr2	54749758	54750257	+	0	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-6352	NR_002229	56969	Hs.657366	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
1.10698-18	chr2	68546268	68546767	+	0	NA	exon (NM_001111101, exon 1 of 3)	exon (NM_001111101, exon 1 of 3)	666	NM_001111101	25927	Hs.212885	NM_015463	ENSG00000119865	CNRIP1	C2orf32|CRIP1	cannabinoid receptor interacting protein 1	protein-coding
5.60667	chr7	155133989	155134488	+	0	NA	Intergenic	Intergenic	26390	NR_103545	338436	Hs.521326	NR_103545	ENSG00000204960	BLACE	-	B-cell acute lymphoblastic leukemia expressed	ncRNA
0.996329-17	chr19	12807163	12807662	+	0	NA	promoter-TSS (NM_032301)	promoter-TSS (NM_032301)	43	NM_032301	84261	Hs.515154	NM_032301	ENSG00000132004	FBXW9	Fbw9	F-box and WD repeat domain containing 9	protein-coding
18.6328	chr5	1339418	1339917	+	0	NA	intron (NM_030782, intron 3 of 16)	CpG	5518	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
2.29148-16	chr19	56111483	56111982	+	0	NA	promoter-TSS (NM_032836)	promoter-TSS (NM_032836)	26	NM_153219	147807	Hs.440291	NM_153219	ENSG00000171443	ZNF524	-	zinc finger protein 524	protein-coding
6.96804-7	chr1	202240002	202240501	+	0	NA	intron (NM_001017404, intron 4 of 15)	intron (NM_001017404, intron 4 of 15)	56968	NM_001017404	59352	Hs.497402	NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
11.2668-2	chr13	52531553	52532052	+	0	NA	intron (NM_001005918, intron 5 of 16)	intron (NM_001005918, intron 5 of 16)	53828	NM_000053	540	Hs.492280	NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
0.594835-26	chr6	167368908	167369407	+	0	NA	intron (NM_003730, intron 1 of 8)	intron (NM_003730, intron 1 of 8)	920	NM_003730	8635	Hs.529989	NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
0.296531-25	chr3	162316214	162316713	+	0	NA	Intergenic	LTR14B|LTR|ERVK	704626	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
3.17855-11	chr12	104682401	104682900	+	0	NA	intron (NM_001261445, intron 1 of 14)	CpG	2190	NM_182743	7296	Hs.654922	NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
2.9243-12	chr5	1130592	1131091	+	0	NA	Intergenic	Intergenic	-18669	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
0.819697-4	chrX	48379861	48380360	+	0	NA	promoter-TSS (NM_006579)	promoter-TSS (NM_006579)	-54	NM_006579	10682	Hs.30619	NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	emopamil binding protein (sterol isomerase)	protein-coding
0.545314-13	chr13	37573243	37573742	+	0	NA	promoter-TSS (NM_001142364)	promoter-TSS (NM_001142364)	12	NM_013338	29880	Hs.507769	NM_013338	ENSG00000120697	ALG5	bA421P11.2	ALG5, dolichyl-phosphate beta-glucosyltransferase	protein-coding
1.35489-32	chr8	115566556	115567055	+	0	NA	Intergenic	LTR75|LTR|ERVL	1113434	NM_001282902	7227	Hs.657018	NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
0.486625	chr16	75797951	75798450	+	0	NA	Intergenic	Intergenic	116565	NM_018975	54386	Hs.301419	NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
3.32547-5	chr13	113596942	113597441	+	0	NA	Intergenic	Intergenic	25761	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
1.02923-3	chr5	176905880	176906379	+	0	NA	Intergenic	Intergenic	-5435	NM_004395	1627	Hs.130316	NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
1.79799-20	chr4	150637428	150637927	+	0	NA	Intergenic	MER52A|LTR|ERV1	-361749	NM_001040261	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
13.3442-2	chr14	68036344	68036843	+	0	NA	intron (NM_020715, intron 8 of 28)	intron (NM_020715, intron 8 of 28)	30424	NM_004569	5283	Hs.553497	NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
0.419142-15	chr7	29153853	29154352	+	0	NA	intron (NM_019029, intron 2 of 12)	AluJr|SINE|Alu	-10547	NR_120523	101928168	Hs.666750	NR_120523	ENSG00000106069	LOC101928168	-	uncharacterized LOC101928168	ncRNA
5.22879-23	chr14	82890214	82890713	+	0	NA	Intergenic	Intergenic	-801058	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
19.6658-3	chr11	875703	876202	+	0	NA	intron (NM_001142675, intron 10 of 12)	intron (NM_001142675, intron 10 of 12)	31506	NM_001025237	7106	Hs.654836	NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
6.9897-23	chr12	6976944	6977443	+	0	NA	promoter-TSS (NM_001258026)	promoter-TSS (NM_001258026)	-85	NM_001258026	7167	Hs.524219	NM_000365	ENSG00000111669	TPI1	HEL-S-49|TIM|TPI|TPID	triosephosphate isomerase 1	protein-coding
1.20904-8	chr20	62526049	62526548	+	0	NA	promoter-TSS (NM_025219)	promoter-TSS (NM_025219)	-157	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
2.37321-2	chr14	101023987	101024486	+	0	NA	intron (NM_020836, intron 2 of 6)	L2|LINE|L2	10171	NM_001159531	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
2.27678-13	chr5	65440326	65440825	+	0	NA	promoter-TSS (NM_139168)	promoter-TSS (NM_139168)	-88	NM_139168	140890	Hs.49367	NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
5.157-2	chr4	57333859	57334358	+	0	NA	intron (NM_001267722, intron 1 of 16)	CpG	346	NM_001267722	6731	Hs.237825	NM_006947	ENSG00000174780	SRP72	BMFF|BMFS1|HEL103	signal recognition particle 72	protein-coding
0.851282-9	chr4	90860625	90861524	+	0	NA	intron (NM_007351, intron 6 of 7)	intron (NM_007351, intron 6 of 7)	45022	NM_007351	22915	Hs.268107	NM_007351	ENSG00000138722	MMRN1	ECM|EMILIN4|GPIa*|MMRN	multimerin 1	protein-coding
1.26679-9	chr9	92864496	92864995	+	0	NA	Intergenic	Intergenic	-60964	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
0.310503-41	chr3	167779310	167779809	+	0	NA	intron (NM_014498, intron 1 of 15)	L1ME3A|LINE|L1	34154	NM_001308155	27333	Hs.143600	NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
0.525663-8	chr3	142945636	142946135	+	0	NA	Intergenic	Intergenic	107267	NM_004267	9435	Hs.8786	NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
0.291884-19	chr5	51293748	51294247	+	0	NA	Intergenic	Intergenic	-614831	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
18.3863-9	chr18	63102786	63103285	+	0	NA	Intergenic	Intergenic	-314453	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
4.13413-5	chr8	121944895	121945394	+	0	NA	Intergenic	Intergenic	-120835	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
0.150229-4	chr18	31733603	31734102	+	0	NA	intron (NM_001198546, intron 1 of 9)	MLT1J1|LTR|ERVL-MaLR	68582	NM_001198547	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
0.574959-9	chr7	137583787	137584286	+	0	NA	intron (NM_001318246, intron 8 of 11)	intron (NM_001318246, intron 8 of 11)	33698	NM_001318246	64764	Hs.490273	NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
0.472076-25	chr20	36156227	36156726	+	0	NA	promoter-TSS (NM_001167822)	promoter-TSS (NM_001167822)	-143	NM_001167820	10904	Hs.472651	NM_006698	ENSG00000166619	BLCAP	BC10	bladder cancer associated protein	protein-coding
15.5909-2	chr16	10821904	10822403	+	0	NA	Intergenic	Intergenic	-15490	NM_002484	4682	Hs.81469	NM_002484	ENSG00000103274	NUBP1	NBP|NBP1|NBP35	nucleotide binding protein 1	protein-coding
0.209071-15	chr7	73620802	73621301	+	0	NA	Intergenic	Intergenic	-3036	NM_014146	7462	Hs.741249	NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T-cells family member 2	protein-coding
3.54578-6	chr10	88428357	88428856	+	0	NA	intron (NM_001080115, intron 1 of 6)	intron (NM_001080115, intron 1 of 6)	180	NM_001080115	11155	Hs.657271	NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
0.390538-16	chr1	205464443	205464942	+	0	NA	Intergenic	Intergenic	-8992	NM_212502	5129	Hs.445402	NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
0.245682-30	chr13	35515839	35516338	+	0	NA	promoter-TSS (NM_015678)	promoter-TSS (NM_015678)	-336	NM_015678	26960	Hs.491172	NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
0.952845-30	chr7	54856267	54856766	+	0	NA	intron (NR_110040, intron 2 of 2)	MIRb|SINE|MIR	29510	NR_110040	100996654	Hs.127991	NR_110040		LOC100996654	-	uncharacterized LOC100996654	ncRNA
2.18245-14	chr2	232468828	232469327	+	0	NA	Intergenic	Intergenic	11502	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
0.0261362-47	chr2	53746940	53747439	+	0	NA	Intergenic	Intergenic	-247731	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding
2.05512-5	chr8	128738270	128738769	+	0	NA	intron (NR_117102, intron 1 of 3)	intron (NR_117102, intron 1 of 3)	7694	NR_117102	100270680	Hs.333720	NR_117101	ENSG00000249375	CASC11	CARLo-7|LINC00990|TCONS_00014535	cancer susceptibility candidate 11 (non-protein coding)	ncRNA
1.84422-9	chr19	42618005	42618504	+	0	NA	intron (NM_001207025, intron 5 of 13)	intron (NM_001207025, intron 5 of 13)	18371	NM_001207026	5452	Hs.147381	NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
2.30623-10	chr4	119757511	119758010	+	0	NA	promoter-TSS (NM_001318066)	promoter-TSS (NM_001318066)	-409	NM_001318066	9871	Hs.189641	NM_014822	ENSG00000150961	SEC24D	CLCRP2	SEC24 homolog D, COPII coat complex component	protein-coding
0.705811-11	chr3	168626139	168626638	+	0	NA	intron (NR_109989, intron 3 of 4)	intron (NR_109989, intron 3 of 4)	6655	NR_109989	100507661	Hs.65918	NR_109989	ENSG00000242268	LINC02082	-	long intergenic non-protein coding RNA 2082	ncRNA
0.433514-9	chr14	55878280	55878779	+	0	NA	promoter-TSS (NM_014924)	promoter-TSS (NM_014924)	47	NM_014924	22863	Hs.414809	NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
0.177288-12	chr2	137005726	137006225	+	0	NA	Intergenic	Intergenic	-130250	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
17.9317	chr12	79409849	79410348	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-29335	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
3.17855-12	chr13	100575079	100575578	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	34091	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA
3.35358-3	chr3	118479821	118480320	+	0	NA	intron (NR_135547, intron 1 of 3)	intron (NR_135547, intron 1 of 3)	49610	NR_135547	105374060	Hs.99062	NR_135547		LOC105374060	-	uncharacterized LOC105374060	ncRNA
3.6251-5	chr17	73905427	73905926	+	0	NA	TTS (NM_001319193)	TTS (NM_001319193)	-4495	NM_032478	64978	Hs.442609	NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding
1.21478-12	chr6	77571045	77571544	+	0	NA	Intergenic	Intergenic	602445	NM_000863	3351	Hs.123016	NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
17.986-3	chr13	25299297	25299796	+	0	NA	Intergenic	Intergenic	-38755	NM_031277	56163	Hs.97464	NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
0.438316-3	chr6	72129530	72130029	+	0	NA	promoter-TSS (NR_121615)	promoter-TSS (NR_121615)	669	NR_121612	79940	Hs.368337	NR_026807		LINC00472	C6orf155	long intergenic non-protein coding RNA 472	ncRNA
2.35077-12	chr2	109889481	109889980	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	40351	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
6.49752-3	chr6	27804883	27805382	+	0	NA	TTS (NM_003510)	TTS (NM_003510)	985	NM_003510	8330	Hs.734717	NM_003510	ENSG00000275221	HIST1H2AK	H2A/d|H2AFD	histone cluster 1 H2A family member k	protein-coding
17.8781-7	chr2	205130286	205131011	+	0	NA	Intergenic	Intergenic	-279868	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
1.37272-26	chr2	152684786	152685285	+	0	NA	promoter-TSS (NM_012097)	promoter-TSS (NM_012097)	-26	NM_177985	26225	Hs.470233	NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
22.815-3	chr1	53948432	53948931	+	0	NA	Intergenic	Intergenic	23609	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
0.34328-29	chr11	33750719	33751218	+	0	NA	intron (NM_000611, intron 1 of 3)	L1PA7|LINE|L1	-6470	NM_001127227	966	Hs.278573	NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule	protein-coding
30.7263-4	chr1	211722639	211723138	+	0	NA	Intergenic	Intergenic	29211	NM_021194	7779	Hs.519469	NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
8.01343-7	chr20	30144895	30145394	+	0	NA	intron (NM_178580, intron 8 of 12)	intron (NM_178580, intron 8 of 12)	15922	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
6.42065-8	chr8	57091351	57091850	+	0	NA	intron (NM_001114634, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	32259	NM_001114635	5324	Hs.14968	NM_002655	ENSG00000181690	PLAG1	PSA|SGPA|ZNF912	PLAG1 zinc finger	protein-coding
0.419142-47	chr16	31226070	31226569	+	0	NA	TTS (NM_152901)	TTS (NM_152901)	977	NM_001008274	493829	Hs.661859	NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
0.0656377-8	chr16	10746869	10747368	+	0	NA	intron (NM_144674, intron 5 of 6)	intron (NM_144674, intron 5 of 6)	41684	NM_144674	146279	Hs.143519	NM_144674	ENSG00000153060	TEKT5	CT149	tektin 5	protein-coding
0.395292-10	chr15	41218125	41218624	+	0	NA	Intergenic	CpG	-3157	NM_019074	54567	Hs.511076	NM_019074	ENSG00000128917	DLL4	AOS6|hdelta2	delta like canonical Notch ligand 4	protein-coding
15.9517	chr9	10014779	10015278	+	0	NA	intron (NM_002839, intron 4 of 45)	intron (NM_002839, intron 4 of 45)	215636	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
1.12946-16	chrX	3631318	3631817	+	0	NA	5' UTR (NM_005044, exon 1 of 9)	5' UTR (NM_005044, exon 1 of 9)	108	NM_005044	5613	Hs.390788	NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase, X-linked	protein-coding
14.1567-2	chr2	99487140	99487639	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	65295	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
2.06908-7	chr13	32711361	32711860	+	0	NA	intron (NM_023037, intron 11 of 60)	intron (NM_023037, intron 11 of 60)	-105834	NR_103839	100507099	Hs.536364	NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
8.32683-10	chr2	213414765	213415264	+	0	NA	Intergenic	Intergenic	-11662	NM_001042599	2066	Hs.390729	NM_005235	ENSG00000178568	ERBB4	ALS19|HER4|p180erbB4	erb-b2 receptor tyrosine kinase 4	protein-coding
1.81115-12	chr1	218518411	218518910	+	0	NA	promoter-TSS (NM_003238)	promoter-TSS (NM_003238)	34	NM_003238	7042	Hs.133379	NM_003238	ENSG00000092969	TGFB2	G-TSF|LDS4|TGF-beta2	transforming growth factor beta 2	protein-coding
1.11259-3	chr7	152033812	152034311	+	0	NA	intron (NM_170606, intron 2 of 58)	intron (NM_170606, intron 2 of 58)	99029	NM_170606	58508	Hs.647120	NM_021230	ENSG00000055609	KMT2C	HALR|MLL3	lysine methyltransferase 2C	protein-coding
15.7675-15	chr9	107644491	107644990	+	0	NA	intron (NM_005502, intron 5 of 49)	intron (NM_005502, intron 5 of 49)	45787	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
0.15923-8	chr15	44069509	44070008	+	0	NA	promoter-TSS (NM_025165)	promoter-TSS (NM_025165)	-256	NM_025165	80237	Hs.706346	NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
3.95774-6	chr7	128864363	128864862	+	0	NA	promoter-TSS (NM_001130720)	promoter-TSS (NM_001130720)	-243	NM_001130720	23382	Hs.600789	NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
1.82435-7	chr7	157483261	157483760	+	0	NA	intron (NM_130843, intron 11 of 21)	CpG	-116396	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
21.2726	chr10	133774994	133775493	+	0	NA	Intergenic	Intergenic	20274	NM_004052	664	Hs.144873	NM_004052	ENSG00000176171	BNIP3	NIP3	BCL2 interacting protein 3	protein-coding
1.29596-8	chr20	57032373	57032872	+	0	NA	Intergenic	Intergenic	57372	NR_130908	164284	Hs.119286	NM_153360	ENSG00000198768	APCDD1L	-	APC down-regulated 1 like	protein-coding
4.97573-3	chr7	127035162	127035661	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-2633	NM_176814	168850	Hs.159006	NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
9.74694-12	chr12	66993605	66994104	+	0	NA	intron (NM_021150, intron 1 of 23)	intron (NM_021150, intron 1 of 23)	79071	NM_021150	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
18.1531-2	chr6	169004010	169004509	+	0	NA	intron (NM_001166412, intron 8 of 12)	L2a|LINE|L2	162428	NM_001166412	64094	Hs.487200	NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
0.0305075-54	chr4	130351644	130352143	+	0	NA	Intergenic	Intergenic	334611	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
0.070049-47	chr17	48073908	48074407	+	0	NA	Intergenic	CpG	-1569	NM_005220	1747	Hs.134194	NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
5.22879-14	chr4	157219277	157219776	+	0	NA	Intergenic	Intergenic	-344478	NM_001334	1519	Hs.75262	NM_001334	ENSG00000256043	CTSO	CTSO1	cathepsin O	protein-coding
1.85752-2	chr6	7777193	7777692	+	0	NA	intron (NM_001718, intron 1 of 6)	intron (NM_001718, intron 1 of 6)	51110	NM_001718	654	Hs.285671	NM_001718	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
0.145735-20	chr2	70994160	70994659	+	0	NA	intron (NM_017482, intron 1 of 12)	intron (NM_017482, intron 1 of 12)	438	NM_001185054	119	Hs.66187	NM_001617	ENSG00000075340	ADD2	ADDB	adducin 2	protein-coding
1.72631-7	chr11	17413806	17414305	+	0	NA	TTS (NM_000352)	TTS (NM_000352)	-3177	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
6.1261-2	chr22	49809643	49810142	+	0	NA	intron (NR_110522, intron 2 of 2)	SVA_C|Other|Other	127222	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
4.34152-2	chr17	33446386	33446885	+	0	NA	non-coding (NR_037712, exon 1 of 8)	non-coding (NR_037712, exon 1 of 8)	253	NR_037712	5892	Hs.631757	NM_002878	ENSG00000185379	RAD51D	BROVCA4|R51H3|RAD51L3|TRAD	RAD51 paralog D	protein-coding
0.93665-13	chr17	8023866	8024365	+	0	NA	3' UTR (NM_032580, exon 4 of 4)	3' UTR (NM_032580, exon 4 of 4)	-1881	NM_001165960	59344	Hs.232770	NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
0.268721-25	chrX	52950320	52950819	+	0	NA	Intergenic	CpG	22484	NM_001099684	727866	Hs.6451	NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
2.83162	chr8	141264156	141264655	+	0	NA	intron (NM_031466, intron 15 of 22)	LTR53|LTR|ERVL	-153771	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
3.53596-11	chr14	48974063	48974562	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-710095	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
1.50581-30	chr12	57028610	57029109	+	0	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	1304	NM_013449	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
0.649968-41	chrY	2360449	2360948	+	0	NA	intron (NM_001171136, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	7882	NM_001171135	9189	Hs.131452	NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
2.8735-2	chr11	26127277	26127776	+	0	NA	Intergenic	L1PA16|LINE|L1	-83144	NM_001313726	63982	Hs.91791	NM_031418	ENSG00000134343	ANO3	C11orf25|DYT23|DYT24|GENX-3947|TMEM16C	anoctamin 3	protein-coding
2.19683-10	chr2	153192444	153192943	+	0	NA	intron (NM_052905, intron 1 of 25)	CpG	942	NM_052905	114793	Hs.654630	NM_052905	ENSG00000157827	FMNL2	FHOD2	formin like 2	protein-coding
1.87087-7	chr1	169395475	169395974	+	0	NA	intron (NM_001300968, intron 2 of 6)	intron (NM_001300968, intron 2 of 6)	988	NM_021179	57821	Hs.567557	NM_021179	ENSG00000117477	CCDC181	C1orf114	coiled-coil domain containing 181	protein-coding
0.259491	chr12	64063084	64063583	+	0	NA	promoter-TSS (NM_173812)	promoter-TSS (NM_173812)	-979	NM_173812	283417	Hs.533644	NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
20.9044	chr5	34010344	34010843	+	0	NA	intron (NR_037951, intron 6 of 8)	L1MA4A|LINE|L1	-2373	NM_001167595	23600	Hs.508343	NM_014324	ENSG00000242110	AMACR	AMACRD|CBAS4|P504S|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
2.02732-6	chr3	61235558	61236057	+	0	NA	intron (NM_002012, intron 1 of 9)	intron (NM_002012, intron 1 of 9)	1328	NM_001320900	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
8.86057-3	chr18	43918696	43919195	+	0	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	4758	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
17.9048-3	chr6	138538471	138538970	+	0	NA	3' UTR (NM_021635, exon 1 of 1)	3' UTR (NM_021635, exon 1 of 1)	907	NM_021635	59351	Hs.302016	NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
1.38466-10	chr13	100623371	100623870	+	0	NA	exon (NM_033132, exon 1 of 2)	exon (NM_033132, exon 1 of 2)	558	NM_033132	85416	Hs.508570	NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
5.867-4	chr11	75479326	75479825	+	0	NA	promoter-TSS (NM_001253891)	promoter-TSS (NM_001253891)	117	NR_046090	283214	Hs.591972	NR_046090	ENSG00000247867	LOC283214	-	uncharacterized LOC283214	ncRNA
2.44125-16	chr7	127031978	127032477	+	0	NA	5' UTR (NM_176814, exon 1 of 6)	5' UTR (NM_176814, exon 1 of 6)	551	NM_176814	168850	Hs.159006	NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
9.66576-10	chr11	82218760	82219259	+	0	NA	Intergenic	MIRb|SINE|MIR	-104054	NR_120571	101928989	Hs.145117	NR_120571	ENSG00000245832	MIR4300HG	-	MIR4300 host gene	ncRNA
0.963675-2	chrX	9510710	9511209	+	0	NA	intron (NM_001139468, intron 3 of 17)	intron (NM_001139468, intron 3 of 17)	77758	NM_005647	6907	Hs.495656	NM_005647	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin beta like 1X-linked	protein-coding
2.88193-16	chr9	117050616	117051115	+	0	NA	intron (NM_032888, intron 42 of 60)	intron (NM_032888, intron 42 of 60)	-34438	NM_000607	5004	Hs.522356	NM_000607	ENSG00000229314	ORM1	AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
0.47692-20	chr3	127871967	127872466	+	0	NA	promoter-TSS (NM_021937)	promoter-TSS (NM_021937)	-84	NM_021937	60678	Hs.477498	NM_021937	ENSG00000132394	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA specific	protein-coding
33.4008	chr13	95600092	95600591	+	0	NA	Intergenic	Intergenic	-11954	NR_047487	100861544	Hs.48706	NR_047487	ENSG00000260962	LINC00557	-	long intergenic non-protein coding RNA 557	ncRNA
6.28932-9	chr1	29524006	29524505	+	0	NA	intron (NM_016011, intron 7 of 9)	intron (NM_016011, intron 7 of 9)	-15618	NM_005626	6429	Hs.469970	NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
16.038-2	chr1	112498302	112498801	+	0	NA	intron (NM_004980, intron 2 of 7)	MIR|SINE|MIR	33226	NM_004980	3752	Hs.666367	NM_004980	ENSG00000171385	KCND3	BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22	potassium voltage-gated channel subfamily D member 3	protein-coding
6.9897-8	chr6	28659788	28660287	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-37785	NR_135285	387055	Hs.369401	NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
0.204516-9	chr9	108781223	108781722	+	0	NA	Intergenic	Intergenic	324666	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
23.0539	chr5	144738318	144738817	+	0	NA	Intergenic	Intergenic	476365	NM_205846	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
4.80172-8	chr4	170968249	170968748	+	0	NA	Intergenic	SVA_D|Other|Other	-14319	NR_125890	9848	Hs.593942	NM_021647	ENSG00000198948	MFAP3L	NYD-sp9	microfibrillar associated protein 3 like	protein-coding
2.99296-25	chr13	76123301	76124061	+	0	NA	promoter-TSS (NM_001287394)	promoter-TSS (NM_001287394)	65	NM_001270952	7347	Hs.162241	NM_006002	ENSG00000118939	UCHL3	UCH-L3	ubiquitin C-terminal hydrolase L3	protein-coding
4.08935-10	chr14	96572318	96572817	+	0	NA	Intergenic	Intergenic	66906	NM_001252507	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
0.979971-20	chr17	16331369	16331868	+	0	NA	intron (NM_016113, intron 8 of 14)	intron (NM_016113, intron 8 of 14)	-10683	NR_027174	125144	Hs.368934	NM_152350	ENSG00000175061	LRRC75A-AS1	C17orf45|C17orf76-AS1|FAM211A-AS1|NCRNA00188|TSAP19	LRRC75A antisense RNA 1	ncRNA
7.56962-3	chr5	6424401	6424900	+	0	NA	Intergenic	Intergenic	-24086	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
38.1248-2	chr17	53253109	53253608	+	0	NA	Intergenic	Intergenic	-88963	NM_002126	3131	Hs.196952	NM_002126	ENSG00000108924	HLF	-	HLF, PAR bZIP transcription factor	protein-coding
7.56962-15	chr18	1018025	1018524	+	0	NA	Intergenic	Intergenic	113077	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
51.549	chr13	80376830	80377329	+	0	NA	Intergenic	Intergenic	-1442	NR_125785	102724076	Hs.208617	NR_125785	ENSG00000229011	LINC01038	-	long intergenic non-protein coding RNA 1038	ncRNA
16.6959-3	chr19	5035280	5035779	+	0	NA	intron (NM_015015, intron 3 of 22)	intron (NM_015015, intron 3 of 22)	66405	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding
15.867	chrX	14369989	14370488	+	0	NA	Intergenic	Intergenic	107851	NR_110506	286480	Hs.567831	NR_110506		UBE2E4P	UbcM2	ubiquitin conjugating enzyme E2 E4 pseudogene	pseudo
11.9791	chr20	35887968	35888467	+	0	NA	Intergenic	MIR3|SINE|MIR	-2906	NM_001184731	2691	Hs.37023	NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
5.27244-10	chr11	86481198	86481697	+	0	NA	Intergenic	SVA_C|Other|Other	-20654	NM_001293180	11098	Hs.25338	NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine 23	protein-coding
0.772745-3	chr1	226160799	226161298	+	0	NA	Intergenic	Intergenic	26018	NM_152608	163859	Hs.520192	NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
0.101054-35	chr1	156721499	156721998	+	0	NA	promoter-TSS (NM_001319187)	promoter-TSS (NM_001319187)	-205	NM_004494	3068	Hs.743948	NM_004494	ENSG00000143321	HDGF	HMG1L2	hepatoma-derived growth factor	protein-coding
1.21478-9	chrX	23685317	23686188	+	0	NA	exon (NM_006406, exon 1 of 7)	exon (NM_006406, exon 1 of 7)	107	NM_006406	10549	Hs.83383	NM_006406	ENSG00000123131	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
0.132283-31	chr15	22968457	22968956	+	0	NA	intron (NM_001033028, intron 6 of 15)	intron (NM_001033028, intron 6 of 15)	12951	NM_001033028	23191	Hs.26704	NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
1.36083-9	chr20	3792296	3792795	+	0	NA	intron (NR_109859, intron 3 of 3)	intron (NR_109859, intron 3 of 3)	3404	NR_109859	101929125	Hs.744106	NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
0.0305075-38	chr3	123686058	123686557	+	0	NA	Intergenic	LTR84b|LTR|ERVL	-6052	NM_001308317	64770	Hs.645028	NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
4.03403-2	chr8	144588669	144589168	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	34702	NM_015117	23144	Hs.521915	NM_015117	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
0.181814-32	chr10	89802108	89802607	+	0	NA	Intergenic	Intergenic	179162	NM_001304717	5728	Hs.500466	NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
28.8273-2	chr13	39675406	39675905	+	0	NA	Intergenic	Intergenic	63207	NM_001017370	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
0.555173-16	chr7	65338199	65338698	+	0	NA	exon (NM_173517, exon 1 of 3)	exon (NM_173517, exon 1 of 3)	362	NM_173517	154807	Hs.427232	NM_173517	ENSG00000196715	VKORC1L1	-	vitamin K epoxide reductase complex subunit 1 like 1	protein-coding
3.32547-8	chr6	64344981	64345480	+	0	NA	promoter-TSS (NM_001290259)	promoter-TSS (NM_001290259)	-477	NM_001290259	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
9.1364-26	chr22	44901741	44902240	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-7985	NM_032287	84247	Hs.744991	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	leucine zipper down-regulated in cancer 1 like	protein-coding
0.861861-2	chr7	99177595	99178094	+	0	NA	Intergenic	CpG	-17845	NM_001195542	100289187	Hs.729333	NM_001195541		GS1-259H13.2	-	transmembrane protein 225-like	protein-coding
6.16185-9	chr19	35411046	35411545	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	6435	NR_110749	102723513	Hs.149702	NR_110749		ZNF30-AS1	-	ZNF30 antisense RNA 1	ncRNA
0.438316-10	chr12	80581484	80581983	+	0	NA	Intergenic	Intergenic	-21500	NM_173591	283310	Hs.723594	NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin like	protein-coding
0.376307-33	chr5	51856139	51856638	+	0	NA	Intergenic	Intergenic	-227386	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
0.619809-11	chr2	111505959	111506458	+	0	NA	intron (NM_001142807, intron 1 of 17)	intron (NM_001142807, intron 1 of 17)	16058	NM_001142807	55289	Hs.253320	NM_018308	ENSG00000153093	ACOXL	-	acyl-CoA oxidase-like	protein-coding
4.43697	chr1_gl000192_random	543512	544011	+	0	NA	Intergenic	Intergenic	-75078	NR_120328	102724558	Hs.712738	NR_120328		CH17-408M7.1	-	uncharacterized LOC102724558	ncRNA
0.428718-20	chr20	10220570	10221069	+	0	NA	intron (NM_001322906, intron 2 of 8)	MLT1E1A|LTR|ERVL-MaLR	-20665	NR_040710	100131208	Hs.658178	NR_040710	ENSG00000227906	SNAP25-AS1	-	SNAP25 antisense RNA 1	ncRNA
29.4692	chr2	1597311	1597810	+	0	NA	Intergenic	Intergenic	150759	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
30.2457	chr3	140775624	140776123	+	0	NA	intron (NM_080862, intron 1 of 2)	intron (NM_080862, intron 1 of 2)	5629	NM_080862	92369	Hs.655112	NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
0.888424-3	chr13	79979760	79980259	+	0	NA	promoter-TSS (NR_038991)	promoter-TSS (NR_038991)	347	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
0.920515-4	chr6	132271657	132272156	+	0	NA	intron (NM_001901, intron 2 of 4)	CpG	612	NM_001901	1490	Hs.410037	NM_001901	ENSG00000118523	CTGF	CCN2|HCS24|IGFBP8|NOV2	connective tissue growth factor	protein-coding
0.550241-13	chr2	7177774	7178273	+	0	NA	intron (NM_014746, intron 8 of 8)	intron (NM_014746, intron 8 of 8)	39988	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
1.82435-27	chr14	23770735	23771234	+	0	NA	exon (NM_001276318, exon 2 of 5)	exon (NM_001276318, exon 2 of 5)	1073	NM_001276318	90673	Hs.601513	NM_001276318	ENSG00000235194	PPP1R3E	-	protein phosphatase 1 regulatory subunit 3E	protein-coding
9.95679-4	chr3	87317868	87318367	+	0	NA	intron (NM_001122757, intron 2 of 5)	intron (NM_001122757, intron 2 of 5)	7620	NM_001122757	5449	Hs.591654	NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
8.26814-15	chr22	35696408	35696907	+	0	NA	intron (NR_024194, intron 1 of 14)	intron (NR_024194, intron 1 of 14)	860	NM_001135732	10043	Hs.474705	NM_005488	ENSG00000100284	TOM1	-	target of myb1 membrane trafficking protein	protein-coding
3.28827-12	chr20	60795200	60795699	+	0	NA	promoter-TSS (NM_007232)	promoter-TSS (NM_007232)	-126	NM_007232	11255	Hs.251399	NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
1.57391-2	chrX	141877235	141877734	+	0	NA	Intergenic	L1MC1|LINE|L1	-236220	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	SPANX family member N4	protein-coding
10.7624-4	chr12	74653754	74654253	+	0	NA	intron (NR_038300, intron 3 of 6)	MER11D|LTR|ERVK	32408	NR_038300	100507377	Hs.455715	NR_038300	ENSG00000251138	LOC100507377	-	uncharacterized LOC100507377	ncRNA
3.74688-10	chr6	31763348	31763847	+	0	NA	5' UTR (NM_006295, exon 1 of 30).5	5' UTR (NM_006295, exon 1 of 30).5	115	NM_006295	7407	Hs.520026	NM_006295	ENSG00000204394	VARS	G7A|VARS1|VARS2	valyl-tRNA synthetase	protein-coding
2.76544-4	chr21	47307044	47307543	+	0	NA	intron (NM_001130141, intron 1 of 12)	MIR|SINE|MIR	37418	NM_020528	54039	Hs.474049	NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3	poly(rC) binding protein 3	protein-coding
1.37272-5	chr17	63096638	63097137	+	0	NA	promoter-TSS (NR_110801)	promoter-TSS (NR_110801)	-43	NR_110801	100507002	Hs.729924	NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
5.25784-7	chr18	60191597	60192096	+	0	NA	intron (NR_126534, intron 1 of 14)	CpG-11852	1188	NR_126534	54877	Hs.114191	NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
1.40261-7	chr7	32929937	32930436	+	0	NA	intron (NM_015483, intron 1 of 3)	intron (NM_015483, intron 1 of 3)	1282	NM_015483	25948	Hs.372541	NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
0.0524306-14	chr11	111845669	111846168	+	0	NA	3' UTR (NM_001278542, exon 6 of 6)	3' UTR (NM_001278542, exon 6 of 6)	-2115	NM_033425	85458	Hs.655626	NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
5.46682-3	chr11	26298302	26298801	+	0	NA	intron (NM_001313726, intron 1 of 27)	intron (NM_001313726, intron 1 of 27)	11003	NR_132968	105376599	Hs.125537	NR_132968	ENSG00000254819	LOC105376599	-	uncharacterized LOC105376599	ncRNA
2.16811-2	chr16	4643005	4643504	+	0	NA	exon (NM_001145011, exon 12 of 16)	exon (NM_001145011, exon 12 of 16)	21673	NM_145253	124402	Hs.513313	NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
0.985417-4	chr12	88660633	88661132	+	0	NA	Intergenic	Intergenic	124809	NM_181783	160418	Hs.331268	NM_181783	ENSG00000139324	TMTC3	LIS8|SMILE	transmembrane and tetratricopeptide repeat containing 3	protein-coding
0.545314-20	chr1	234478367	234478866	+	0	NA	Intergenic	Intergenic	30533	NR_125962	101927765	Hs.596703	NR_125961	ENSG00000231663	LOC101927765	-	uncharacterized LOC101927765	ncRNA
2.66001-27	chr13	85682476	85682975	+	0	NA	intron (NR_126383, intron 1 of 5)	LTR28|LTR|ERV1	39467	NR_126383	104355140		NR_126383	ENSG00000226370	LINC00375	-	long intergenic non-protein coding RNA 375	ncRNA
0.33389	chr6	56614345	56614844	+	0	NA	intron (NM_001144769, intron 4 of 96)	intron (NM_001144769, intron 4 of 96)	93869	NM_183380	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
23.1605-2	chr17	5015007	5015506	+	0	NA	promoter-TSS (NR_135658)	promoter-TSS (NR_135658)	26	NR_135658	101928000	Hs.660048	NR_135657	ENSG00000234327	LOC101928000	-	uncharacterized LOC101928000	ncRNA
16.6154	chr2	114393953	114394452	+	0	NA	intron (NM_007082, intron 5 of 9)	MLT1G3|LTR|ERVL-MaLR	8071	NM_001306160	11159	Hs.446425	NM_007082	ENSG00000144134	RABL2A	-	RAB, member of RAS oncogene family-like 2A	protein-coding
2.27678-8	chr15	42175318	42175817	+	0	NA	exon (NM_016642, exon 8 of 68)	exon (NM_016642, exon 8 of 68)	-9408	NR_135681	105370792	Hs.627877	NR_135681		LOC105370792	-	uncharacterized LOC105370792	ncRNA
1.08463-5	chr19	11534264	11534763	+	0	NA	intron (NM_001302453, intron 8 of 12)	intron (NM_001302453, intron 8 of 12)	-4495	NM_001035223	57139	Hs.375142	NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
7.85156-8	chr2	128407183	128407682	+	0	NA	intron (NM_001161416, intron 2 of 2)	intron (NM_001161416, intron 2 of 2)	-1604	NM_001256542	55679	Hs.469881	NM_017980	ENSG00000072163	LIMS2	LGMD2W|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
2.33587-2	chr15	43885864	43886363	+	0	NA	promoter-TSS (NR_135748)	promoter-TSS (NR_135748)	81	NR_135752	1159	Hs.741420	NM_020990	ENSG00000237289	CKMT1B	CKMT|CKMT1|UMTCK	creatine kinase, mitochondrial 1B	protein-coding
0.555173-30	chr17	19045665	19046164	+	0	NA	intron (NM_001129778, intron 3 of 3)	intron (NM_001129778, intron 3 of 3)	15132	NM_001129778	400581	Hs.647426	NM_001129778	ENSG00000189152	GRAPL	-	GRB2 related adaptor protein like	protein-coding
0.231917-29	chr19	46320269	46320768	+	0	NA	intron (NM_004819, intron 23 of 26)	intron (NM_004819, intron 23 of 26)	-1913	NM_030785	81492	Hs.146544	NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
35.2578	chr11	15772343	15772842	+	0	NA	Intergenic	Intergenic	107161	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
18.729	chr11	74036629	74037128	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-14157	NM_001288748	283208	Hs.660541	NM_182904	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase subunit alpha 3	protein-coding
0.985417-9	chr20	18568276	18569213	+	0	NA	exon (NM_001318043, exon 1 of 5)	exon (NM_001318043, exon 1 of 5)	207	NM_001318043	92675	Hs.659442	NM_080820	ENSG00000125821	DTD1	C20orf88|DUE-B|DUEB|HARS2|pqn-68	D-tyrosyl-tRNA deacylase 1	protein-coding
0.231917-18	chr2	160568530	160569029	+	0	NA	promoter-TSS (NM_001282805)	promoter-TSS (NM_001282805)	167	NR_110586	29994	Hs.470369	NM_013450	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain 2B	protein-coding
1.23782	chr22	45705593	45706092	+	0	NA	promoter-TSS (NM_017911)	promoter-TSS (NM_017911)	57	NM_017911	55007	Hs.265018	NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
22.8316	chr2	5935834	5936333	+	0	NA	Intergenic	L1PA10|LINE|L1	103284	NM_003108	6664	Hs.432638	NM_003108	ENSG00000176887	SOX11	MRD27	SRY-box 11	protein-coding
14.7366	chr8	101450409	101450908	+	0	NA	Intergenic	Intergenic	55667	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
5.85027-10	chr16	11730140	11730639	+	0	NA	Intergenic	LTR9|LTR|ERV1	-31900	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
12.8567-2	chr8	145048886	145049385	+	0	NA	intron (NM_000445, intron 2 of 32)	CpG-26192	-1438	NM_201378	5339	Hs.434248	NM_000445	ENSG00000178209	PLEC	EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
0.209071-10	chr11	62323824	62324323	+	0	NA	Intergenic	Intergenic	3705	NR_037427	100500804		NR_037427		MIR3654	-	microRNA 3654	ncRNA
0.851282-15	chr6	92406948	92407447	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-7051	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
3.00162-10	chr14	50469962	50470461	+	0	NA	non-coding (NR_126496, exon 1 of 5)	non-coding (NR_126496, exon 1 of 5)	3026	NR_126496	283551	Hs.292580	NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
2.39578-13	chr19	48165310	48165809	+	0	NA	intron (NM_015711, intron 1 of 14)	MLT1H|LTR|ERVL-MaLR	-51042	NM_014601	30846	Hs.744963	NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
1.74574-8	chr8	36957370	36957869	+	0	NA	Intergenic	Intergenic	-21852	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
0.0174066-22	chr3	160993720	160994219	+	0	NA	Intergenic	L1PBa|LINE|L1	54891	NM_015938	51068	Hs.598836	NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
50.1368	chr5	125055539	125056038	+	0	NA	Intergenic	Intergenic	226834	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
1.75874-9	chr12	56094383	56094882	+	0	NA	intron (NM_001144996, intron 4 of 24)	intron (NM_001144996, intron 4 of 24)	7054	NM_002206	3679	Hs.524484	NM_002206	ENSG00000135424	ITGA7	-	integrin subunit alpha 7	protein-coding
23.9686-2	chr4	89922121	89922620	+	0	NA	intron (NM_014883, intron 3 of 23)	intron (NM_014883, intron 3 of 23)	55976	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
4.698	chr2	217497450	217498325	+	0	NA	promoter-TSS (NM_000597)	promoter-TSS (NM_000597)	-240	NM_000597	3485	Hs.438102	NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding
17.0774-3	chr12	3669157	3669656	+	0	NA	intron (NM_001256536, intron 4 of 9)	intron (NM_001256536, intron 4 of 9)	-67421	NR_126055	100129223	Hs.586788	NR_126055		THCAT155	-	thyroid cancer-associated transcript 155	ncRNA
2.16811-3	chr1	245675734	245676233	+	0	NA	intron (NM_018012, intron 4 of 14)	intron (NM_018012, intron 4 of 14)	357696	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
3.56547-15	chr9	33263579	33264455	+	0	NA	promoter-TSS (NM_001195536)	promoter-TSS (NM_001195536)	742	NM_001172415	573	Hs.377484	NM_004323	ENSG00000107262	BAG1	BAG-1|HAP|RAP46	BCL2 associated athanogene 1	protein-coding
12.8567-3	chr16	68484709	68485208	+	0	NA	Intergenic	Intergenic	-2549	NM_018667	55512	Hs.368421	NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
14.5593-3	chr3	138178450	138178949	+	0	NA	intron (NM_031913, intron 5 of 22)	intron (NM_031913, intron 5 of 22)	25284	NM_001322831	83850	Hs.477711	NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
0.310503-40	chr17	72209385	72209884	+	0	NA	promoter-TSS (NR_026914)	promoter-TSS (NR_026914)	-62	NM_032646	94015	Hs.27935	NM_032646	ENSG00000141540	TTYH2	C17orf29	tweety family member 2	protein-coding
1.15771-31	chr1	146705297	146705796	+	0	NA	Intergenic	SVA_D|Other|Other	-8316	NM_001144829	2330	Hs.642706	NM_001461	ENSG00000131781	FMO5	-	flavin containing monooxygenase 5	protein-coding
3.29754-10	chr9	107690265	107690764	+	0	NA	promoter-TSS (NM_005502)	promoter-TSS (NM_005502)	13	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
3.85103-4	chr2	20591643	20592142	+	0	NA	Intergenic	Intergenic	-41281	NM_015317	23369	Hs.467824	NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
8.50781-9	chr2	217214026	217214525	+	0	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	22475	NM_020814	57574	Hs.170388	NM_020814	ENSG00000144583	MARCH4	MARCH-IV|RNF174	membrane associated ring-CH-type finger 4	protein-coding
7.28158-3	chr3	176888051	176888550	+	0	NA	intron (NM_001321194, intron 1 of 16)	intron (NM_001321194, intron 1 of 16)	25972	NM_001321193	79718	Hs.714201	NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	transducin beta like 1 X-linked receptor 1	protein-coding
12.0135-6	chr5	71674611	71675110	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	58666	NM_001284405	79810	Hs.126906	NM_024754	ENSG00000049883	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
9.74694-8	chr4	185297178	185297677	+	0	NA	intron (NR_125934, intron 2 of 5)	L1MC4|LINE|L1	6033	NR_125934	102723766	Hs.432281	NR_125933	ENSG00000249096	LOC102723766	-	uncharacterized LOC102723766	ncRNA
0.996329-34	chr10	50602986	50603485	+	0	NA	intron (NM_001276451, intron 2 of 6)	CpG	827	NM_001276451	644168	Hs.534530	NM_001080520	ENSG00000165606	DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
0.788339-23	chr3	9004749	9005248	+	0	NA	intron (NM_020165, intron 1 of 12)	CpG	161	NM_020165	56852	Hs.375684	NM_020165	ENSG00000070950	RAD18	RNF73	RAD18, E3 ubiquitin protein ligase	protein-coding
4.78862-4	chr10	81166730	81167229	+	0	NA	intron (NM_153367, intron 2 of 3)	intron (NM_153367, intron 2 of 3)	38404	NM_153367	219654	Hs.523080	NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
0.0744648-3	chr17	17653162	17653661	+	0	NA	intron (NM_030665, intron 2 of 5)	MLT1J2|LTR|ERVL-MaLR	16205	NR_130894	100861516	Hs.624874	NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
10.7469-8	chr2	47572055	47572554	+	0	NA	promoter-TSS (NR_110208)	promoter-TSS (NR_110208)	-91	NR_110208	101927043	Hs.515976	NR_110207	ENSG00000234690	LOC101927043	-	uncharacterized LOC101927043	ncRNA
0.25028	chr12	125667727	125668226	+	0	NA	Intergenic	Intergenic	118063	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
3.15155-13	chrUn_gl000215	164072	164571	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	95807	NR_128718	103504736		NR_128718	ENSG00000278618	MIR8069-2	hsa-mir-8069-2	microRNA 8069-2	ncRNA
3.37242-7	chr11	66822437	66822936	+	0	NA	Intergenic	Intergenic	-1603	NM_014578	29984	Hs.15114	NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
2.86509-3	chr8	12612083	12612582	+	0	NA	exon (NM_001329976, exon 1 of 12)	exon (NM_001329976, exon 1 of 12)	619	NR_138255	91694	Hs.180178	NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
5.78396-12	chr12	3186054	3186553	+	0	NA	promoter-TSS (NM_001168320)	promoter-TSS (NM_001168320)	-218	NM_001168320	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
3.12471-7	chr2	183506978	183507477	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-73541	NR_073367	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
13.439-3	chr3	165638807	165639306	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-83796	NR_137636	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
11.5614-2	chr3	77517179	77517678	+	0	NA	intron (NM_001128929, intron 1 of 24)	intron (NM_001128929, intron 1 of 24)	370265	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
1.91789-7	chr12	124994291	124994790	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	57470	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
0.376307-21	chr9	133773359	133773858	+	0	NA	Intergenic	Intergenic	-1409	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
8.23909-11	chr15	101668425	101668924	+	0	NA	Intergenic	Intergenic	123463	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
2.77366-6	chr2	75787892	75788391	+	0	NA	promoter-TSS (NM_001135032)	promoter-TSS (NM_001135032)	-49	NM_001135032	84141	Hs.302346	NM_032181	ENSG00000115363	EVA1A	FAM176A|TMEM166	eva-1 homolog A, regulator of programmed cell death	protein-coding
1.60522-14	chr20	39801663	39802162	+	0	NA	intron (NM_182811, intron 27 of 31)	intron (NM_182811, intron 27 of 31)	4249	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
0.291884-17	chr2	220117824	220118323	+	0	NA	non-coding (NR_003063, exon 1 of 4)	non-coding (NR_003063, exon 1 of 4)	108	NR_003063	80086	Hs.664469	NR_003063	ENSG00000243910	TUBA4B	TUBA4	tubulin alpha 4b	pseudo
0.695604-7	chrX	102565644	102566143	+	0	NA	promoter-TSS (NM_001168399)	promoter-TSS (NM_001168399)	-10	NM_001168399	84707	Hs.398989	NM_032621	ENSG00000133134	BEX2	BEX1|DJ79P11.1	brain expressed X-linked 2	protein-coding
5.90067-5	chr1	9687002	9687501	+	0	NA	Intergenic	CpG	-24539	NM_005026	5293	Hs.518451	NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|P110DELTA|PI3K|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
0.423927-4	chr5	151204918	151205417	+	0	NA	intron (NM_001146040, intron 8 of 8)	intron (NM_001146040, intron 8 of 8)	-53430	NR_132345	100652758	Hs.587054	NM_001278082		LOC100652758	-	uncharacterized LOC100652758	ncRNA
0.25028-12	chr20	412000	412499	+	0	NA	non-coding (NR_136659, exon 12 of 12)	non-coding (NR_136659, exon 12 of 12)	23555	NM_006462	10616	Hs.29546	NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
1.9044-18	chr3	192635013	192635512	+	0	NA	intron (NM_178496, intron 1 of 1)	CpG	688	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
2.13959-19	chr22	51167831	51168330	+	0	NA	intron (NM_033517, intron 21 of 21)	intron (NM_033517, intron 21 of 21)	8517	NR_134637	105373100	Hs.475243	NR_134637	ENSG00000225929	LOC105373100	-	uncharacterized LOC105373100	ncRNA
0.0348833-6	chrX	14057317	14057816	+	0	NA	Intergenic	Intergenic	-9531	NM_001042479	54960	Hs.592237	NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
0.0833099-17	chr17	68291764	68292263	+	0	NA	Intergenic	Intergenic	126337	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium voltage-gated channel subfamily J member 2	protein-coding
3.40084-6	chr6	33378329	33378828	+	0	NA	promoter-TSS (NM_024165).2	promoter-TSS (NM_024165).2	-195	NM_002636	5252	Hs.166204	NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
0.0174066-15	chr7	90234316	90234815	+	0	NA	intron (NM_001287135, intron 2 of 14)	intron (NM_001287135, intron 2 of 14)	8889	NM_001287135	5218	Hs.258576	NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding
1.44481-8	chr5	153989843	153990342	+	0	NA	Intergenic	CpG	-14460	NR_036094	100422950		NR_036094	ENSG00000264760	MIR3141	mir-3141	microRNA 3141	ncRNA
10.4096-3	chr11	60637670	60638169	+	0	NA	exon (NM_207341, exon 4 of 12)	exon (NM_207341, exon 4 of 12)	2904	NM_207341	22917	Hs.172130	NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1	zona pellucida glycoprotein 1	protein-coding
1.00727	chr2	175613530	175614029	+	0	NA	intron (NM_001039523, intron 8 of 9)	intron (NM_001039523, intron 8 of 9)	15421	NM_001039523	1134	Hs.434479	NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
4.54693-3	chr6	43337222	43337721	+	0	NA	promoter-TSS (NM_014345)	promoter-TSS (NM_014345)	-290	NM_014345	24149	Hs.509718	NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
15.2433-2	chr1	64475231	64475730	+	0	NA	intron (NM_001083592, intron 2 of 6)	intron (NM_001083592, intron 2 of 6)	102408	NR_110666	101927034	Hs.680824	NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
0.877779-7	chr22	46449170	46449669	+	0	NA	promoter-TSS (NR_027034)	promoter-TSS (NR_027034)	-307	NR_027034	150381	Hs.659113	NR_027034		PRR34-AS1	-	PRR34 antisense RNA 1	ncRNA
0.390538-14	chr6	110679091	110679590	+	0	NA	exon (NM_001123364, exon 1 of 5)	exon (NM_001123364, exon 1 of 5)	135	NM_001123364	728464	Hs.722171	NM_001123364	ENSG00000053328	METTL24	C6orf186|dJ71D21.2	methyltransferase like 24	protein-coding
0.438316-26	chr7	116312055	116312554	+	0	NA	promoter-TSS (NM_001324402)	promoter-TSS (NM_001324402)	-109	NM_001324402	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
10.8355-3	chr17	7298037	7298536	+	0	NA	promoter-TSS (NM_001201576)	promoter-TSS (NM_001201576)	-124	NM_001201576	57048	Hs.534591	NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
0.695604-2	chr17	77783778	77784277	+	0	NA	Intergenic	CpG	-13112	NM_020649	57332	Hs.387258	NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
0.199966-9	chr2	9695694	9696193	+	0	NA	promoter-TSS (NM_003183)	promoter-TSS (NM_003183)	6	NM_003183	6868	Hs.404914	NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
3.8934-5	chr11	17494542	17495041	+	0	NA	intron (NM_001287174, intron 2 of 38)	intron (NM_001287174, intron 2 of 38)	3601	NM_000352	6833	Hs.54470	NM_000352	ENSG00000006071	ABCC8	ABC36|HHF1|HI|HRINS|MRP8|PHHI|SUR|SUR1|SUR1delta2|TNDM2	ATP binding cassette subfamily C member 8	protein-coding
0.132283-9	chr8	142326753	142327252	+	0	NA	Intergenic	Intergenic	-23646	NR_024441	731779	Hs.586414	NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
12.0343	chr1	22534332	22534831	+	0	NA	Intergenic	Intergenic	-58151	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA
0.996329-2	chr14	81397119	81397618	+	0	NA	intron (NM_152446, intron 1 of 23)	Charlie3|DNA|hAT-Charlie	8516	NM_152446	145508	Hs.162889	NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
0.190881-26	chrUn_gl000212	88002	88501	+	0	NA	Intergenic	Intergenic	64202	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
0.347983-4	chr10	88724197	88724696	+	0	NA	Intergenic	Intergenic	-3742	NM_006829	10974	Hs.642660	NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
1.12946-5	chr9	80346836	80347335	+	0	NA	intron (NM_002072, intron 5 of 6)	intron (NM_002072, intron 5 of 6)	-83853	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
6.75718-6	chr11	76644283	76644782	+	0	NA	intron (NM_001300955, intron 2 of 9)	SVA_D|Other|Other	72615	NM_001300955	55331	Hs.23862	NM_018367	ENSG00000078124	ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
0.0305075-12	chr4	24471820	24472319	+	0	NA	intron (NM_001330752, intron 1 of 13)	CpG	2383	NM_001330752	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
1.19186-39	chr1	4108026	4108525	+	0	NA	Intergenic	Intergenic	107603	NR_040065	728716	Hs.668359	NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
0.0877392-18	chr2	208633896	208634395	+	0	NA	promoter-TSS (NM_003468)	promoter-TSS (NM_003468)	-2	NM_003468	7855	Hs.17631	NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5	frizzled class receptor 5	protein-coding
12.5414-2	chr4	125991863	125992362	+	0	NA	Intergenic	Intergenic	-245455	NM_024582	79633	Hs.563205	NM_024582	ENSG00000196159	FAT4	CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
1.26098-18	chr1	160001140	160002003	+	0	NA	5' UTR (NM_145167, exon 1 of 1)	5' UTR (NM_145167, exon 1 of 1)	212	NM_145167	93183	Hs.552810	NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
2.38072-2	chr17	4401813	4402312	+	0	NA	promoter-TSS (NM_001124758)	promoter-TSS (NM_001124758)	-76	NM_001124758	124976	Hs.22824	NM_001124758	ENSG00000183018	SPNS2	-	sphingolipid transporter 2	protein-coding
0.0877392-45	chr15	65822803	65823302	+	0	NA	exon (NM_016395, exon 1 of 11)	exon (NM_016395, exon 1 of 11)	225	NM_016395	51495	Hs.512973	NM_016395	ENSG00000074696	HACD3	B-IND1|BIND1|HSPC121|PTPLAD1	3-hydroxyacyl-CoA dehydratase 3	protein-coding
0.319843-5	chr4	65404883	65405382	+	0	NA	Intergenic	Intergenic	-129954	NM_001010874	253017	Hs.227752	NM_001010874	ENSG00000205678	TECRL	CPVT3|GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
15.4975-2	chr2	21499015	21499514	+	0	NA	Intergenic	Intergenic	152406	NM_001306137	100129278	Hs.651096	NM_001306137	ENSG00000218819	TDRD15	-	tudor domain containing 15	protein-coding
49.8297	chr12	7638997	7639496	+	0	NA	exon (NM_004244, exon 10 of 17)	exon (NM_004244, exon 10 of 17)	17168	NM_203416	9332	Hs.504641	NM_004244	ENSG00000177575	CD163	M130|MM130|SCARI1	CD163 molecule	protein-coding
6.94649-11	chr7	105477993	105478492	+	0	NA	intron (NM_020725, intron 2 of 11)	intron (NM_020725, intron 2 of 11)	38789	NM_152749	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
12.8904-2	chr12	683878	684377	+	0	NA	intron (NM_016533, intron 1 of 3)	MIRc|SINE|MIR	11525	NR_134624	105369595	Hs.504422	NR_134624		LOC105369595	-	uncharacterized LOC105369595	ncRNA
6.96804-10	chr11	13904459	13904958	+	0	NA	Intergenic	Intergenic	41702	NR_135052	101928132	Hs.568970	NR_135052	ENSG00000254438	LOC101928132	-	uncharacterized LOC101928132	ncRNA
1.73925-9	chr12	125322731	125323230	+	0	NA	intron (NM_001082959, intron 1 of 11)	intron (NM_001082959, intron 1 of 11)	25539	NM_005505	949	Hs.731377	NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
0.624821-10	chr12	65174013	65174512	+	0	NA	promoter-TSS (NM_001330188)	promoter-TSS (NM_001330188)	-711	NM_001330188	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
2.29148-17	chr15	75230175	75230674	+	0	NA	promoter-TSS (NM_004255)	promoter-TSS (NM_004255)	71	NM_004255	9377	Hs.401903	NM_004255	ENSG00000178741	COX5A	COX|COX-VA|VA	cytochrome c oxidase subunit 5A	protein-coding
0.48177-27	chr11	60691686	60692185	+	0	NA	promoter-TSS (NM_017870)	promoter-TSS (NM_017870)	22	NM_017870	54972	Hs.118552	NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
6.28932-13	chr7	7778170	7778669	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-20181	NM_002947	6119	Hs.487540	NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
3.61511-2	chr11	57103118	57103617	+	0	NA	promoter-TSS (NM_003146)	promoter-TSS (NM_003146)	-16	NM_003146	6749	Hs.523680	NM_003146	ENSG00000149136	SSRP1	FACT|FACT80|T160	structure specific recognition protein 1	protein-coding
1.40862-4	chr11	12714651	12715150	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	18931	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
2.97569-16	chr4	169120311	169120810	+	0	NA	Intergenic	Intergenic	106872	NM_007193	11199	Hs.188401	NM_007193	ENSG00000109511	ANXA10	ANX14	annexin A10	protein-coding
2.02732-14	chr6	160081768	160082267	+	0	NA	Intergenic	SVA_D|Other|Other	32343	NM_001024466	6648	Hs.487046	NM_000636	ENSG00000112096	SOD2	IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2, mitochondrial	protein-coding
0.213631-21	chr4	150954995	150955494	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-44182	NM_001040261	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
1.22629-21	chr13	37478308	37478807	+	0	NA	intron (NM_005905, intron 1 of 5)	intron (NM_005905, intron 1 of 5)	15852	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
0.419142-3	chr19	19453461	19453960	+	0	NA	intron (NM_015329, intron 9 of 18)	intron (NM_015329, intron 9 of 18)	22080	NM_015329	23383	Hs.654939	NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
27.5696	chr16	81514511	81515010	+	0	NA	intron (NM_198390, intron 1 of 20)	L2a|LINE|L2	-14194	NM_030629	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
1.56145-3	chr7	148762134	148762633	+	0	NA	Intergenic	Intergenic	25486	NM_152411	136051	Hs.729572	NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
2.32102-2	chr13	40229529	40230028	+	0	NA	promoter-TSS (NM_020751)	promoter-TSS (NM_020751)	14	NR_026745	57511	Hs.507805	NM_020751	ENSG00000133103	COG6	CDG2L|COD2|SHNS	component of oligomeric golgi complex 6	protein-coding
0.0921731-35	chr6	17987861	17988360	+	0	NA	promoter-TSS (NM_001105566)	promoter-TSS (NM_001105566)	-256	NM_001105566	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
1.30182-10	chr3	195162489	195162988	+	0	NA	intron (NM_012287, intron 1 of 22)	intron (NM_012287, intron 1 of 22)	1079	NM_012287	23527	Hs.593373	NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
1.09579-6	chr22	42016123	42017389	+	0	NA	promoter-TSS (NM_001288978)	promoter-TSS (NM_001288978)	305	NM_015704	27351	Hs.570455	NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|PPPDE2	desumoylating isopeptidase 1	protein-coding
15.0864	chr1	94166167	94166666	+	0	NA	intron (NM_001261408, intron 3 of 13)	intron (NM_001261408, intron 3 of 13)	-19022	NM_003567	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
3.69572-5	chr2	36650249	36650748	+	0	NA	intron (NM_016441, intron 2 of 16)	intron (NM_016441, intron 2 of 16)	67128	NM_016441	51232	Hs.699247	NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
2.28413-8	chr14	101018896	101019395	+	0	NA	intron (NM_020836, intron 2 of 6)	intron (NM_020836, intron 2 of 6)	15262	NM_001159531	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
10.2411-3	chrX	33982259	33982758	+	0	NA	Intergenic	L1PA15|LINE|L1	167939	NM_203408	158724	Hs.143268	NM_203408	ENSG00000185448	FAM47A	-	family with sequence similarity 47 member A	protein-coding
0.486625-17	chr7	6941564	6942063	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-75887	NM_198097	221960	Hs.567779	NM_198097	ENSG00000146574	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
20.2045	chr20	52972143	52972642	+	0	NA	Intergenic	L2c|LINE|L2	-119619	NM_001294161	55816	Hs.473133	NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
1.75224-5	chr10	114543400	114543899	+	0	NA	intron (NM_001318205, intron 7 of 7)	intron (NM_001318205, intron 7 of 7)	-39606	NR_120684	103344931	Hs.458447	NR_120684	ENSG00000260917	LOC103344931	-	uncharacterized LOC103344931	ncRNA
5.55955-4	chr18	74332138	74332637	+	0	NA	non-coding (NR_120419, exon 1 of 2)	non-coding (NR_120419, exon 1 of 2)	653	NR_120419	400660	Hs.131718	NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
8.21023	chr8	27805826	27806325	+	0	NA	intron (NM_173833, intron 3 of 8)	intron (NM_173833, intron 3 of 8)	44294	NM_173833	286133	Hs.591833	NM_173833	ENSG00000168079	SCARA5	NET33|Tesr	scavenger receptor class A member 5	protein-coding
1.37869-44	chr5	43105350	43105849	+	0	NA	Intergenic	Intergenic	-15346	NM_001330707	7690	Hs.535804	NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
3.6251-2	chrX	37545625	37546124	+	0	NA	intron (NM_021083, intron 1 of 2)	intron (NM_021083, intron 1 of 2)	865	NM_021083	7504	Hs.78919	NM_021083	ENSG00000047597	XK	KX|NA|NAC|X1k|XKR1	X-linked Kx blood group	protein-coding
11.5802	chr6	26687271	26687770	+	0	NA	Intergenic	tRNA-Ala-GCY|tRNA|tRNA	-27540	NM_001242798	79692	Hs.126280	NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
16.1618	chr3	97439109	97439608	+	0	NA	intron (NM_001080448, intron 15 of 17)	intron (NM_001080448, intron 15 of 17)	-44007	NR_136595	84100	Hs.373801	NM_032146	ENSG00000113966	ARL6	BBS3|RP55	ADP ribosylation factor like GTPase 6	protein-coding
0.409586-29	chr4	131484342	131484841	+	0	NA	Intergenic	Intergenic	-791958	NR_110753	101927282	Hs.407480	NR_110753	ENSG00000246876	LOC101927282	-	uncharacterized LOC101927282	ncRNA
3.00162-11	chr3	50418585	50419084	+	0	NA	intron (NM_001005505, intron 6 of 37)	intron (NM_001005505, intron 6 of 37)	16069	NR_111913	11068	Hs.149443	NM_007022	ENSG00000114395	CYB561D2	101F6|TSP10|XXcos-LUCA11.4	cytochrome b561 family member D2	protein-coding
1.80456-8	chr4	29985388	29985887	+	0	NA	Intergenic	L1M1|LINE|L1	-736393	NM_032456	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
1.07905-14	chr6	108498411	108498910	+	0	NA	intron (NM_003269, intron 4 of 8)	intron (NM_003269, intron 4 of 8)	9433	NM_001286102	7101	Hs.157688	NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
2.64401-2	chr1	219833060	219833559	+	0	NA	Intergenic	Intergenic	-102643	NR_135822	102723886	Hs.525963	NR_135822		LOC102723886	-	uncharacterized LOC102723886	ncRNA
0.301184-12	chr15	33603035	33603534	+	0	NA	promoter-TSS (NR_120327)	promoter-TSS (NR_120327)	121	NM_001243996	6263	Hs.709373	NM_001036	ENSG00000198838	RYR3	RYR-3	ryanodine receptor 3	protein-coding
4.65974-3	chr1	167242618	167243117	+	0	NA	intron (NM_002697, intron 1 of 15)	intron (NM_002697, intron 1 of 15)	52744	NR_037163	5451	Hs.283402	NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
0.070049-29	chr8	21988830	21989329	+	0	NA	promoter-TSS (NM_005144)	promoter-TSS (NM_005144)	-514	NM_005144	55806	Hs.272367	NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR, lysine demethylase and nuclear receptor corepressor	protein-coding
8.29738-2	chr17	75773243	75773742	+	0	NA	Intergenic	SVA_E|Other|Other	-48851	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
7.07744-8	chr9	35646816	35647315	+	0	NA	non-coding (NR_135130, exon 2 of 2)	non-coding (NR_135130, exon 2 of 2)	798	NR_135130	101926948	Hs.639412	NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
19.1721	chr5	111910143	111910642	+	0	NA	Intergenic	Intergenic	-53741	NR_104672	102467214	Hs.124613	NR_104672		LOC102467214	-	uncharacterized LOC102467214	ncRNA
10.4915-2	chr9	27371404	27371903	+	0	NA	intron (NM_024761, intron 2 of 3)	MER102c|DNA|hAT-Charlie	-74516	NM_020641	54586	Hs.163070	NM_020641	ENSG00000120160	EQTN	AFAF|C9orf11|SPACA8	equatorin	protein-coding
0.395292-9	chr7	89874434	89874933	+	0	NA	5' UTR (NM_001160138, exon 1 of 23)	5' UTR (NM_001160138, exon 1 of 23)	195	NM_001160138	79846	Hs.521014	NM_024788	ENSG00000105792	CFAP69	C7orf63|FAP69	cilia and flagella associated protein 69	protein-coding
0.132283-7	chr1	229698914	229699413	+	0	NA	Intergenic	Intergenic	-4721	NM_012089	23456	Hs.17614	NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	ATP binding cassette subfamily B member 10	protein-coding
2.30623-11	chr18	2524866	2525365	+	0	NA	Intergenic	L1PA10|LINE|L1	46387	NM_001308401	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
4.59671-8	chr1	180897653	180898152	+	0	NA	intron (NM_020950, intron 4 of 8)	L2c|LINE|L2	15589	NM_020950	57710	Hs.734816	NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
4.58421-9	chr8	74268534	74269033	+	0	NA	promoter-TSS (NR_125388)	promoter-TSS (NR_125388)	-87	NR_125388	101926926	Hs.640090	NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA
1.58015-12	chr3	185303622	185304121	+	0	NA	promoter-TSS (NM_021627)	promoter-TSS (NM_021627)	-160	NM_021627	59343	Hs.401388	NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
0.856568-18	chr7	30927250	30927749	+	0	NA	intron (NM_032222, intron 17 of 17)	intron (NM_032222, intron 17 of 17)	-23810	NM_198098	358	Hs.76152	NM_000385	ENSG00000240583	AQP1	AQP-CHIP|CHIP28|CO	aquaporin 1 (Colton blood group)	protein-coding
5.98599	chr8	144679149	144679648	+	0	NA	promoter-TSS (NM_032862)	promoter-TSS (NM_032862)	185	NM_001330646	1936	Hs.333388	NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
7.98603-11	chr10	1496563	1497062	+	0	NA	intron (NM_018702, intron 1 of 9)	L1MB3|LINE|L1	-72013	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
2.76544-3	chr7	34149760	34150259	+	0	NA	intron (NM_133468, intron 14 of 15)	intron (NM_133468, intron 14 of 15)	205486	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
10.2365-3	chr18	62401471	62401970	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-474430	NR_033983	400654	Hs.434235	NR_033983	ENSG00000266952	LINC01538	-	long intergenic non-protein coding RNA 1538	ncRNA
7.05534-6	chr20	47470028	47470527	+	0	NA	Intergenic	MIRc|SINE|MIR	-25857	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
1.00179-13	chr9	139426809	139427308	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-12980	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
1.35489-8	chr20	10125793	10126292	+	0	NA	intron (NR_040710, intron 2 of 4)	intron (NR_040710, intron 2 of 4)	-73404	NM_001322907	6616	Hs.167317	NM_003081	ENSG00000132639	SNAP25	CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2	synaptosome associated protein 25	protein-coding
0.296531-4	chr12	131589113	131589612	+	0	NA	intron (NM_001330497, intron 16 of 25)	intron (NM_001330497, intron 16 of 25)	-60194	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
9.62574-11	chr17	28850790	28851289	+	0	NA	3' UTR (NM_004871, exon 9 of 9)	3' UTR (NM_004871, exon 9 of 9)	-35545	NM_015594	26083	Hs.241421	NM_015594	ENSG00000266733	TBC1D29	-	TBC1 domain family member 29	protein-coding
6.30784-19	chr8	102167411	102167910	+	0	NA	Intergenic	Intergenic	50300	NM_016096	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
1.55523-2	chr22	18484053	18484552	+	0	NA	intron (NM_015241, intron 1 of 31)	CpG	-20575	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
2.41088-4	chr3	160281885	160282384	+	0	NA	intron (NM_002268, intron 1 of 16)	intron (NM_002268, intron 1 of 16)	1242	NM_002268	3840	Hs.467866	NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
0.819697-2	chr7	40096842	40097341	+	0	NA	intron (NM_003718, intron 7 of 13)	MLT1J1|LTR|ERVL-MaLR	77160	NM_138701	136647	Hs.654989	NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20|TTD4	M-phase specific PLK1 interacting protein	protein-coding
0.0833099-47	chr5	136640082	136640581	+	0	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	176445	NR_134246	105379192	Hs.124611	NR_134246		LOC105379192	-	uncharacterized LOC105379192	ncRNA
0.291884-44	chr8	140969611	140970110	+	0	NA	intron (NM_031466, intron 19 of 22)	intron (NM_031466, intron 19 of 22)	140774	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
1.9044-7	chr13	95619725	95620224	+	0	NA	Intergenic	CpG	7679	NR_047487	100861544	Hs.48706	NR_047487	ENSG00000260962	LINC00557	-	long intergenic non-protein coding RNA 557	ncRNA
2.21126	chr11	62609204	62609703	+	0	NA	Intergenic	Intergenic	-1825	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
9.17215-12	chr9	15240896	15241395	+	0	NA	intron (NM_152574, intron 2 of 19)	L3|LINE|CR1	9053	NM_001168342	158219	Hs.563630	NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
0.545314-12	chr5	1290899	1291398	+	0	NA	intron (NM_198253, intron 2 of 15)	CpG	4014	NM_001193376	7015	Hs.492203	NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
0.172766-15	chr1	217696460	217696959	+	0	NA	intron (NM_018040, intron 5 of 9)	SVA_D|Other|Other	107735	NM_018040	55105	Hs.362343	NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30	G-patch domain containing 2	protein-coding
14.6218-2	chr2	198478068	198478567	+	0	NA	intron (NM_144629, intron 7 of 8)	intron (NM_144629, intron 7 of 8)	62267	NM_144629	130132	Hs.591615	NM_144629	ENSG00000162944	RFTN2	C2orf11|Raftlin-2	raftlin family member 2	protein-coding
0.400052-47	chr10	129652182	129652681	+	0	NA	Intergenic	Intergenic	38780	NM_152311	119467	Hs.242014	NM_152311	ENSG00000180745	CLRN3	TMEM12|USH3AL1	clarin 3	protein-coding
0.599818-18	chr13	20207476	20207975	+	0	NA	promoter-TSS (NM_017520)	promoter-TSS (NM_017520)	-63	NM_017520	54737	Hs.269654	NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
15.9688-8	chr5	45090755	45091254	+	0	NA	Intergenic	Intergenic	281977	NM_016640	10884	Hs.124165	NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
18.3268-7	chr3	173030786	173031285	+	0	NA	Intergenic	Intergenic	-85203	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
7.01147-8	chr6	122211480	122211979	+	0	NA	Intergenic	Intergenic	455006	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
3.00162-13	chr5	16418465	16418964	+	0	NA	intron (NR_104625, intron 7 of 8)	intron (NR_104625, intron 7 of 8)	22497	NR_104625	101929505	Hs.639360	NR_104625	ENSG00000248150	LINC02150	-	long intergenic non-protein coding RNA 2150	ncRNA
0.579919-8	chr3	46106767	46107266	+	0	NA	Intergenic	Intergenic	-38037	NM_005283	2829	Hs.128375	NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
24.5346	chr5	7337460	7337959	+	0	NA	Intergenic	Intergenic	10381	NR_134277	101929261	Hs.308202	NR_134277	ENSG00000250668	LINC02123	-	long intergenic non-protein coding RNA 2123	ncRNA
23.2514	chr8	59942972	59943471	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	88546	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
8.21023-9	chr3	129608921	129609420	+	0	NA	intron (NM_001128224, intron 1 of 5)	intron (NM_001128224, intron 1 of 5)	3249	NM_001128224	23023	Hs.477547	NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
6.07303-5	chr3	8019260	8019759	+	0	NA	intron (NR_110131, intron 2 of 3)	intron (NR_110131, intron 2 of 3)	38485	NR_110131	101927394	Hs.517767	NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
0.132283-33	chr9	112118280	112118779	+	0	NA	Intergenic	Intergenic	-35285	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
3.63512-28	chr1	114446981	114447480	+	0	NA	promoter-TSS (NM_001319947)	promoter-TSS (NM_001319947)	-11	NM_001319947	64858	Hs.591412	NM_022836	ENSG00000118655	DCLRE1B	APOLLO|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
4.78862-5	chr2	16706660	16707159	+	0	NA	Intergenic	LTR41B|LTR|ERVL	140225	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding
24.4733-5	chr3	127567986	127568675	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-26237	NM_001003794	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
0.920515-23	chr13	101166991	101167490	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	18816	NM_033110	87769	Hs.350868	NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
0.213631-22	chr19	18111599	18112098	+	0	NA	promoter-TSS (NM_001025604)	promoter-TSS (NM_001025604)	-93	NM_001025604	27106	Hs.515249	NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
0.0612309-8	chr11	77741516	77742015	+	0	NA	intron (NM_001203261, intron 2 of 2)	intron (NM_001203261, intron 2 of 2)	-7445	NM_023930	65987	Hs.709780	NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding
0.227338-17	chr7	66949121	66949620	+	0	NA	Intergenic	Intergenic	148407	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
32.5493-3	chr2	23904195	23904694	+	0	NA	intron (NM_052920, intron 5 of 13)	intron (NM_052920, intron 5 of 13)	245540	NM_001242338	54454	Hs.467862	NM_017552	ENSG00000119778	ATAD2B	-	ATPase family, AAA domain containing 2B	protein-coding
28.4771	chr9	97733606	97734105	+	0	NA	intron (NM_032823, intron 8 of 14)	intron (NM_032823, intron 8 of 14)	-93777	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
0.920515-10	chr12	11783103	11783602	+	0	NA	Intergenic	Intergenic	-19436	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
21.4086-2	chr9	82080039	82080538	+	0	NA	Intergenic	Intergenic	-106400	NM_007005	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
10.2365-2	chr8	98788460	98788959	+	0	NA	intron (NM_018407, intron 1 of 6)	CpG	900	NM_018407	55353	Hs.492314	NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
0.877779-20	chr6	43957348	43957847	+	0	NA	Intergenic	Intergenic	-10740	NM_153246	221416	Hs.531926	NM_153246	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
3.27902	chr19	47730210	47730709	+	0	NA	promoter-TSS (NR_036159)	promoter-TSS (NR_036159)	-183	NR_036159	100422832		NR_036159	ENSG00000105327	MIR3191	mir-3191	microRNA 3191	ncRNA
0.390538-24	chr13	52470359	52470858	+	0	NA	Intergenic	Intergenic	34524	NM_001346075	83446	Hs.120573	NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
21.107	chr2	29970839	29971338	+	0	NA	intron (NM_004304, intron 1 of 28)	intron (NM_004304, intron 1 of 28)	173389	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
0.48177-34	chr15	59664034	59664533	+	0	NA	intron (NM_004998, intron 1 of 27)	CpG	788	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
0.888424-20	chr11	62623290	62623789	+	0	NA	promoter-TSS (NR_003098)	promoter-TSS (NR_003098)	55	NM_001012664	6520	Hs.502769	NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
1.49967-15	chr10	106028554	106029053	+	0	NA	promoter-TSS (NR_039702)	promoter-TSS (NR_039702)	172	NM_183239	119391	Hs.107384	NM_183239	ENSG00000065621	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
2.89883-19	chr7	158832615	158833114	+	0	NA	intron (NM_001304522, intron 4 of 10)	intron (NM_001304522, intron 4 of 10)	31819	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
2.84833-9	chr4	17513234	17513733	+	0	NA	intron (NM_000320, intron 1 of 6)	CpG	374	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
0.141246-18	chr20	62490097	62490596	+	0	NA	Intergenic	Intergenic	-2220	NM_080622	140701	Hs.266774	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
1.11259-13	chr13	111967571	111968070	+	0	NA	promoter-TSS (NM_001303133)	promoter-TSS (NM_001303133)	-712	NM_001303133	121793	Hs.210677	NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
1.06793-8	chr22	27168113	27168612	+	0	NA	intron (NR_110543, intron 2 of 5)	SVA_F|Other|Other	99556	NR_110543	102724827	Hs.642767	NR_110543		MIATNB	-	MIAT neighbor (non-protein coding)	ncRNA
7.82516-7	chr1	209203746	209204245	+	0	NA	Intergenic	Intergenic	-294806	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
4.11168-7	chr7	123649383	123649882	+	0	NA	intron (NR_133947, intron 3 of 4)	MSTB|LTR|ERVL-MaLR	14956	NR_133947	105375483	Hs.435972	NR_133947	ENSG00000241345	LOC105375483	-	uncharacterized LOC105375483	ncRNA
0.888424-26	chr1	155214585	155215084	+	0	NA	promoter-TSS (NM_001171811)	promoter-TSS (NM_001171811)	-181	NM_001005742	2629	Hs.282997	NM_000157	ENSG00000177628	GBA	GBA1|GCB|GLUC	glucosylceramidase beta	protein-coding
0.0788851-3	chr11	57405377	57405876	+	0	NA	Intergenic	Intergenic	-3045	NR_029673	406919		NR_029673	ENSG00000208009	MIR130A	MIRN130A|miRNA130A|mir-130a	microRNA 130a	ncRNA
0.385789-23	chr11	113576826	113577325	+	0	NA	promoter-TSS (NR_110047)	promoter-TSS (NR_110047)	20	NM_001288752	80975	Hs.46720	NM_030770	ENSG00000166682	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding
23.9794	chr19	34801329	34801828	+	0	NA	intron (NM_014686, intron 2 of 13)	intron (NM_014686, intron 2 of 13)	-54067	NM_001289789	2821	Hs.466471	NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
10.6098-2	chr9	38018876	38019375	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	50085	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
0.985417-11	chr8	117560389	117560888	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	-103701	NR_136278	105375713		NR_136278		LOC105375713	-	uncharacterized LOC105375713	ncRNA
1.00179-2	chr2	152855434	152855933	+	0	NA	intron (NM_001145798, intron 2 of 12)	intron (NM_001145798, intron 2 of 12)	-25083	NM_001330115	785	Hs.120725	NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
4.01209-4	chr6	93003974	93004473	+	0	NA	Intergenic	Intergenic	-604077	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
1.62412-2	chr14	103394546	103395045	+	0	NA	exon (NM_030943, exon 4 of 12)	exon (NM_030943, exon 4 of 12)	5802	NM_030943	81693	Hs.534494	NM_030943	ENSG00000166126	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
5.08638-5	chr10	78744463	78744962	+	0	NA	intron (NM_001322838, intron 19 of 29)	intron (NM_001322838, intron 19 of 29)	96910	NR_120655	101929328	Hs.664552	NR_120655	ENSG00000236467	KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
1.99971-2	chr22	37447492	37447991	+	0	NA	promoter-TSS (NM_001282686)	promoter-TSS (NM_001282686)	-35	NM_001282684	79734	Hs.517597	NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
7.56962-22	chr18	8870542	8871041	+	0	NA	Intergenic	Intergenic	153422	NM_015210	23255	Hs.707920	NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
9.914-7	chr6	75915504	75916003	+	0	NA	promoter-TSS (NM_004370)	promoter-TSS (NM_004370)	-130	NM_004370	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|UCMD2	collagen type XII alpha 1 chain	protein-coding
14.437-3	chr2	127100673	127101172	+	0	NA	Intergenic	Intergenic	-312589	NM_016815	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
8.21023-11	chr7	70440838	70441337	+	0	NA	Intergenic	Intergenic	-156436	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
15.1145	chr8	86089849	86090755	+	0	NA	intron (NM_001951, intron 1 of 7)	intron (NM_001951, intron 1 of 7)	683	NM_001083588	1875	Hs.445758	NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
1.18045-5	chr7	150652665	150653408	+	0	NA	promoter-TSS (NM_001204798)	promoter-TSS (NM_001204798)	-119	NM_172057	3757	Hs.647099	NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
9.1364-21	chr19	13796317	13796816	+	0	NA	Intergenic	Intergenic	-46008	NM_001320564	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
0.118872-61	chr1	183203726	183204225	+	0	NA	intron (NM_018891, intron 15 of 21)	intron (NM_018891, intron 15 of 21)	48801	NM_005562	3918	Hs.591484	NM_005562	ENSG00000058085	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2	laminin subunit gamma 2	protein-coding
0.9691-7	chr3	114597266	114597765	+	0	NA	intron (NM_001164343, intron 3 of 11)	intron (NM_001164343, intron 3 of 11)	5635	NR_126422	104413890	Hs.612732	NR_126422	ENSG00000239946	ZBTB20-AS3	-	ZBTB20 antisense RNA 3	ncRNA
6.73664-5	chr22	16200117	16201032	+	0	NA	intron (NR_132385, intron 2 of 2)	CpG	-7565	NR_122113	503637	Hs.744284	NR_122113	ENSG00000206195	DUXAP8	-	double homeobox A pseudogene 8	pseudo
3.76751-5	chr5	174905677	174906176	+	0	NA	intron (NM_001322981, intron 1 of 9)	CpG	425	NM_001322977	94081	Hs.369440	NM_022754	ENSG00000164466	SFXN1	TCC	sideroflexin 1	protein-coding
2.41088-3	chr1	226111712	226112211	+	0	NA	promoter-TSS (NM_001271681)	promoter-TSS (NM_001271681)	79	NM_013328	29920	Hs.654718	NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase family member 2	protein-coding
1.31944-6	chr7	106765787	106766286	+	0	NA	intron (NM_002736, intron 3 of 10)	intron (NM_002736, intron 3 of 10)	-43370	NM_001244262	26959	Hs.162032	NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
0.560111-20	chr2	188364689	188365188	+	0	NA	intron (NM_001032281, intron 2 of 6)	MIRb|SINE|MIR	-51917	NM_001271751	10203	Hs.470882	NM_005795	ENSG00000064989	CALCRL	CGRPR|CRLR	calcitonin receptor like receptor	protein-coding
6.00326-10	chr17	18885304	18885803	+	0	NA	intron (NM_001039999, intron 3 of 5)	intron (NM_001039999, intron 3 of 5)	22507	NM_001039999	644815	Hs.710727	NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
7.93174-7	chr3	181029715	181030214	+	0	NA	intron (NR_075093, intron 2 of 4)	intron (NR_075093, intron 2 of 4)	80439	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
0.264104-5	chr15	31555923	31556646	+	0	NA	Intergenic	Intergenic	-33230	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
4.11168-8	chr22	30819949	30820448	+	0	NA	3' UTR (NM_012429, exon 12 of 12)	3' UTR (NM_012429, exon 12 of 12)	-1413	NM_001003704	51537	Hs.713636	NM_016498	ENSG00000242114	MTFP1	HSPC242|MTP18	mitochondrial fission process 1	protein-coding
22.2548-3	chr4	65732319	65732818	+	0	NA	Intergenic	Intergenic	137650	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
9.62574-3	chr14	100288043	100288542	+	0	NA	intron (NM_001008707, intron 1 of 22)	X3_LINE|LINE|RTE-BovB	28547	NM_001008707	2009	Hs.12451	NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
8.23909	chr13	100702556	100703055	+	0	NA	Intergenic	MER61C|LTR|ERV1	38392	NR_132422	105370333	Hs.186291	NR_132422	ENSG00000274605	LOC105370333	-	uncharacterized LOC105370333	ncRNA
9.66576-18	chr8	145597255	145597754	+	0	NA	promoter-TSS (NR_134307)	promoter-TSS (NR_134307)	-200	NM_174922	203054	Hs.283374	NM_174922	ENSG00000173137	ADCK5	-	aarF domain containing kinase 5	protein-coding
12.7084-4	chr3	141688467	141688966	+	0	NA	intron (NM_001178139, intron 9 of 12)	intron (NM_001178139, intron 9 of 12)	30513	NM_001178140	7029	Hs.379018	NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
3.8405	chr16	89940344	89940843	+	0	NA	intron (NM_014972, intron 1 of 17)	CpG	599	NM_014972	22980	Hs.415342	NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
3.39135-5	chr3	32943377	32943876	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49440	NM_005508	1233	Hs.184926	NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
2.54145-6	chr1	212873745	212874244	+	0	NA	promoter-TSS (NM_018664)	promoter-TSS (NM_018664)	-667	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
12.7246-8	chr6	34063459	34063958	+	0	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	10051	NM_001256813	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
1.06238	chr11	36766029	36766528	+	0	NA	Intergenic	Intergenic	-146449	NM_001243786	5897	Hs.714519	NM_000536	ENSG00000175097	RAG2	RAG-2	recombination activating 2	protein-coding
3.41989-7	chr10	75173374	75173873	+	0	NA	intron (NM_004034, intron 1 of 13)	CpG	220	NM_001156	310	Hs.631827	NM_001156	ENSG00000138279	ANXA7	ANX7|SNX|SYNEXIN	annexin A7	protein-coding
1.86419-14	chr10	104404542	104405041	+	0	NA	exon (NM_030912, exon 1 of 6)	exon (NM_030912, exon 1 of 6)	539	NR_144321	81603	Hs.336810	NM_030912	ENSG00000171206	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding
19.8716-5	chr5	11918692	11919191	+	0	NA	Intergenic	Intergenic	-14786	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
1.23205-3	chr13	67897814	67898313	+	0	NA	Intergenic	Intergenic	-48456	NR_130792	100874145	Hs.508194	NR_130792	ENSG00000230040	LINC00364	-	long intergenic non-protein coding RNA 364	ncRNA
4.698-8	chr4	143768295	143768794	+	0	NA	promoter-TSS (NM_001331040)	promoter-TSS (NM_001331040)	-856	NM_003866	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
6.6354-4	chr6	19302275	19302774	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-121813	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
0.594835-24	chr17	7184573	7185072	+	0	NA	promoter-TSS (NM_001042)	promoter-TSS (NM_001042)	-232	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
1.88425-16	chr7	140098087	140098586	+	0	NA	promoter-TSS (NM_001287498)	promoter-TSS (NM_001287498)	14	NM_001287498	84255	Hs.446021	NM_032295	ENSG00000157800	SLC37A3	-	solute carrier family 37 member 3	protein-coding
1.26098-15	chr13	78492825	78493324	+	0	NA	promoter-TSS (NM_003991)	promoter-TSS (NM_003991)	-108	NM_003991	1910	Hs.82002	NM_000115	ENSG00000136160	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
7.42321-5	chr22	36932765	36933264	+	0	NA	Intergenic	Intergenic	-7737	NM_003753	8664	Hs.55682	NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
1.77178-12	chrX	138821031	138821530	+	0	NA	intron (NM_173694, intron 27 of 29)	intron (NM_173694, intron 27 of 29)	-30899	NM_001171876	4168	Hs.387262	NM_005369	ENSG00000101977	MCF2	ARHGEF21|DBL	MCF.2 cell line derived transforming sequence	protein-coding
0.296531-122	chr9_gl000199_random	104506	105005	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
9.58607	chr15	94774099	94774598	+	0	NA	Intergenic	Intergenic	-67082	NM_001159643	55784	Hs.33368	NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
2.99296-26	chr6	33818613	33819112	+	0	NA	Intergenic	Intergenic	45822	NR_038989	100507584	Hs.547104	NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
0.856568-17	chr20	277839	278338	+	0	NA	promoter-TSS (NM_033089)	promoter-TSS (NM_033089)	-116	NM_033089	85364	Hs.28608	NM_033089	ENSG00000247315	ZCCHC3	C20orf99	zinc finger CCHC-type containing 3	protein-coding
7.01147-10	chr11	15096010	15096509	+	0	NA	5' UTR (NM_000728, exon 2 of 5)	5' UTR (NM_000728, exon 2 of 5)	1113	NM_000728	797	Hs.534305	NM_000728	ENSG00000175868	CALCB	CALC2|CGRP-II|CGRP2	calcitonin related polypeptide beta	protein-coding
0.457575-8	chr4	71467062	71467561	+	0	NA	exon (NM_016519, exon 6 of 13)	exon (NM_016519, exon 6 of 13)	9336	NM_016519	258	Hs.272396	NM_016519	ENSG00000178522	AMBN	AI1F	ameloblastin	protein-coding
6.42065-4	chr1	46989573	46990072	+	0	NA	Intergenic	L2c|LINE|L2	-14546	NR_038403	100507423	Hs.601863	NR_038403	ENSG00000269956	MKNK1-AS1	-	MKNK1 antisense RNA 1	ncRNA
2.17527-11	chr7	64407620	64408119	+	0	NA	Intergenic	CpG	43545	NM_015852	51351	Hs.250693	NM_015852	ENSG00000152926	ZNF117	H-plk|HPF9	zinc finger protein 117	protein-coding
0.996329-38	chr6	138909982	138910481	+	0	NA	Intergenic	Intergenic	-16563	NM_020464	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
0.070049-59	chr13	115105162	115105661	+	0	NA	Intergenic	Intergenic	-5988	NR_126391	104355150	Hs.569217	NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
3.53596-21	chr21	44527520	44528019	+	0	NA	promoter-TSS (NM_001320651)	promoter-TSS (NM_001320651)	-53	NM_001320646	102724594	Hs.365116	NM_001320646	ENSG00000275895	U2AF1L5	-	U2 small nuclear RNA auxiliary factor 1 like 5	protein-coding
0.357404-20	chr3	112769987	112770486	+	0	NA	Intergenic	Intergenic	-31656	NM_001319112	25871	Hs.591288	NM_015412	ENSG00000163608	NEPRO	C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
2.89883-3	chr6	138356110	138356609	+	0	NA	Intergenic	Intergenic	72301	NM_022121	64065	Hs.201446	NM_022121	ENSG00000112378	PERP	KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1	PERP, TP53 apoptosis effector	protein-coding
4.01209-15	chr11	12271063	12271562	+	0	NA	intron (NM_001282666, intron 16 of 18)	intron (NM_001282666, intron 16 of 18)	-37135	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
0.273344-15	chr6	5036395	5036894	+	0	NA	intron (NR_126018, intron 1 of 1)	intron (NR_126018, intron 1 of 1)	6438	NR_126019	100129461	Hs.131700	NR_126015	ENSG00000272142	LYRM4-AS1	-	LYRM4 antisense RNA 1	ncRNA
17.2816-2	chr12	131993929	131994428	+	0	NA	Intergenic	Intergenic	162163	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
0.798767-29	chr2	42588702	42589201	+	0	NA	promoter-TSS (NM_001319038)	promoter-TSS (NM_001319038)	-568	NM_001319040	9167	Hs.339639	NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
0.599818-27	chr12	92458732	92459231	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	76508	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
3.65523-5	chr17	76124517	76125016	+	0	NA	5' UTR (NM_001321185, exon 1 of 20)	5' UTR (NM_001321185, exon 1 of 20)	109	NM_001127198	11322	Hs.632227	NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P	transmembrane channel like 6	protein-coding
24.2481	chr17	18893634	18894133	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	14177	NM_001039999	644815	Hs.710727	NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
1.64309-3	chr3	139108337	139108836	+	0	NA	promoter-TSS (NM_004766)	promoter-TSS (NM_004766)	-59	NR_121609	100507291	Hs.97661	NR_121608	ENSG00000248932	LOC100507291	-	uncharacterized LOC100507291	ncRNA
0.0656377-17	chr20	4856254	4856753	+	0	NA	intron (NM_203327, intron 9 of 16)	intron (NM_203327, intron 9 of 16)	-52212	NM_014737	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
1.13509-7	chr13	71297774	71298273	+	0	NA	Intergenic	L3|LINE|CR1	-291250	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
0.419142-21	chr20	30795428	30795927	+	0	NA	promoter-TSS (NM_015352)	promoter-TSS (NM_015352)	-19	NM_172236	23509	Hs.472409	NM_015352	ENSG00000101346	POFUT1	DDD2|FUT12|O-FUT|O-Fuc-T|O-FucT-1|OFUCT1	protein O-fucosyltransferase 1	protein-coding
11.5181	chr5	172198231	172198730	+	0	NA	promoter-TSS (NM_004417)	promoter-TSS (NM_004417)	-277	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
7.93174-5	chr4	2537549	2538048	+	0	NA	Intergenic	CpG	66618	NM_001185009	6047	Hs.66394	NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
1.19186-24	chr3	156229892	156230391	+	0	NA	intron (NM_172159, intron 8 of 13)	intron (NM_172159, intron 8 of 13)	41773	NM_001308205	6747	Hs.518346	NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
0.329203-9	chr2	74425400	74425899	+	0	NA	promoter-TSS (NM_006636)	promoter-TSS (NM_006636)	-41	NR_027405	10797	Hs.469030	NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
3.34419-9	chr15	79484906	79485405	+	0	NA	intron (NR_038997, intron 1 of 1)	intron (NR_038997, intron 1 of 1)	-16975	NR_029705	406960		NR_029705	ENSG00000207695	MIR184	EDICT|MIRN184|miR-184	microRNA 184	ncRNA
0.680339-40	chr8	38440700	38441199	+	0	NA	Intergenic	Intergenic	17826	NR_003129	286140	Hs.512071	NR_003129		RNF5P1	-	ring finger protein 5 pseudogene 1	pseudo
0.181814-24	chr1	11088	11587	+	0	NA	promoter-TSS (NR_046018)	promoter-TSS (NR_046018)	-537	NR_046018	100287102	Hs.618434	NR_046018	ENSG00000223972	DDX11L1	-	DEAD/H-box helicase 11 like 1	pseudo
6.67562-6	chr6	33683922	33684421	+	0	NA	Intergenic	Intergenic	-4643	NM_032340	84300	Hs.732448	NM_032340	ENSG00000137288	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
38.4771	chr3	10463664	10464163	+	0	NA	intron (NM_001330611, intron 2 of 21)	intron (NM_001330611, intron 2 of 21)	-27667	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
24.0121	chr8	18037026	18037525	+	0	NA	intron (NM_001291962, intron 2 of 5)	intron (NM_001291962, intron 2 of 5)	9304	NM_001291962	9	Hs.591847	NM_000662	ENSG00000171428	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1	protein-coding
10.9313-3	chr12	84993268	84993767	+	0	NA	Intergenic	Intergenic	313091	NM_182767	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
7.79892-3	chr8	130952248	130952747	+	0	NA	promoter-TSS (NR_046359)	promoter-TSS (NR_046359)	-346	NM_001330612	51571	Hs.126941	NM_016623	ENSG00000153310	FAM49B	BM-009|L1	family with sequence similarity 49 member B	protein-coding
0.409586-20	chr6	105612155	105612654	+	0	NA	intron (NM_022361, intron 1 of 3)	intron (NM_022361, intron 1 of 3)	11726	NR_024539	64208	Hs.458336	NM_022361	ENSG00000132429	POPDC3	POP3|bA355M14.1	popeye domain containing 3	protein-coding
0.665127-3	chrX	135228743	135229242	+	0	NA	promoter-TSS (NM_001449)	promoter-TSS (NM_001449)	131	NR_027621	2273	Hs.435369	NM_001449	ENSG00000022267	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
1.45087-14	chr9_gl000199_random	153486	153985	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5.85027	chr6	43214113	43214612	+	0	NA	5' UTR (NM_032538, exon 2 of 15)	5' UTR (NM_032538, exon 2 of 15)	2944	NM_032538	84630	Hs.485436	NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
10.3574-2	chr4	48906058	48906557	+	0	NA	intron (NM_152398, intron 2 of 5)	AluJr|SINE|Alu	2538	NM_001014446	132299	Hs.95835	NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
1.48742-3	chr7	73157196	73157695	+	0	NA	Intergenic	Intergenic	-4248	NM_001301058	83451	Hs.647045	NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding
0.352691-7	chr12	56693676	56694175	+	0	NA	intron (NM_004077, intron 1 of 10)	CpG	250	NM_004077	1431	Hs.743252	NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
3.85103-2	chr6	20699581	20700080	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	165142	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
0.8302-16	chr15	34629304	34629803	+	0	NA	promoter-TSS (NM_133647)	promoter-TSS (NM_133647)	408	NM_001042494	9990	Hs.510939	NM_005135	ENSG00000140199	SLC12A6	ACCPN|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
0.376307-19	chr14	105964356	105964855	+	0	NA	intron (NM_001134876, intron 6 of 6)	intron (NM_001134876, intron 6 of 6)	7019	NM_001134875	283643	Hs.720306	NM_173608	ENSG00000185347	C14orf80	-	chromosome 14 open reading frame 80	protein-coding
0.0174066-17	chr2	220288631	220289130	+	0	NA	intron (NM_001927, intron 7 of 8)	intron (NM_001927, intron 7 of 8)	5781	NM_001927	1674	Hs.594952	NM_001927	ENSG00000175084	DES	CSM1|CSM2|LGMD2R	desmin	protein-coding
0.79355-4	chr2	96192357	96192856	+	0	NA	Intergenic	CpG	-42127	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
3.81952-10	chr6	109786881	109787380	+	0	NA	promoter-TSS (NM_001286613)	promoter-TSS (NM_001286613)	41	NM_001286613	64780	Hs.33476	NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
0.76756-12	chr7	95704714	95705213	+	0	NA	intron (NM_001278422, intron 13 of 15)	intron (NM_001278422, intron 13 of 15)	144105	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
8.76148-7	chr9	126235476	126235975	+	0	NA	intron (NM_024820, intron 13 of 20)	intron (NM_024820, intron 13 of 20)	12176	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
0.329203-17	chr20	62762683	62763182	+	0	NA	Intergenic	Intergenic	-24748	NM_005286	2832	Hs.248118	NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
19.5468	chr5	22152835	22153334	+	0	NA	TTS (NR_003921)	TTS (NR_003921)	10623	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	pro-melanin concentrating hormone like 1 (pseudogene)	pseudo
3.1158-3	chr9	125026768	125027267	+	0	NA	non-coding (NR_027125, exon 1 of 7)	non-coding (NR_027125, exon 1 of 7)	126	NM_033117	92400	Hs.415842	NM_033117	ENSG00000119446	RBM18	-	RNA binding motif protein 18	protein-coding
1.04025-11	chr3	111258418	111258917	+	0	NA	Intergenic	Intergenic	-2259	NR_134917	10225	Hs.142023	NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
3.63512-15	chr2	56242795	56243294	+	0	NA	intron (NR_126406, intron 1 of 2)	intron (NR_126406, intron 1 of 2)	-15114	NR_030623	100126319		NR_030623	ENSG00000211520	MIR216B	MIRN216B|mir-216b	microRNA 216b	ncRNA
2.54145-3	chr2	127955310	127955809	+	0	NA	intron (NM_001001665, intron 4 of 7)	intron (NM_001001665, intron 4 of 7)	7784	NM_001001665	339761	Hs.407639	NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
6.73664-8	chr6	83047337	83047836	+	0	NA	Intergenic	Intergenic	-25337	NM_006670	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
1.14639-12	chr11	4203201	4203700	+	0	NA	Intergenic	Intergenic	-4932	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	ncRNA
16.5561-4	chr6	137322360	137322859	+	0	NA	3' UTR (NM_001278722, exon 7 of 7)	3' UTR (NM_001278722, exon 7 of 7)	-8241	NR_027994	100294720	Hs.520412	NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed 1	ncRNA
3.17855-6	chr13	21290959	21291458	+	0	NA	intron (NM_138284, intron 2 of 2)	intron (NM_138284, intron 2 of 2)	13726	NM_138284	53342	Hs.655142	NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
2.24026-18	chr1	46750737	46751236	+	0	NA	intron (NM_006369, intron 4 of 9)	intron (NM_006369, intron 4 of 9)	18052	NM_006369	10489	Hs.144941	NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
2.43364-12	chr8	69242944	69243443	+	0	NA	5' UTR (NM_001195639, exon 1 of 7)	5' UTR (NM_001195639, exon 1 of 7)	236	NM_001195639	116328	Hs.491941	NM_052958	ENSG00000165084	C8orf34	VEST-1|VEST1	chromosome 8 open reading frame 34	protein-coding
1.44481-5	chr7	130131210	130131709	+	0	NA	promoter-TSS (NM_001253900)	promoter-TSS (NM_001253900)	289	NM_177525	4232	Hs.270978	NM_002402	ENSG00000106484	MEST	PEG1	mesoderm specific transcript	protein-coding
0.070049-42	chr5	132948094	132948593	+	0	NA	promoter-TSS (NM_015082)	promoter-TSS (NM_015082)	-120	NM_015082	23105	Hs.483390	NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
12.3433	chr4	166755223	166755722	+	0	NA	Intergenic	Intergenic	-38938	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
1.18045-2	chr12	56513033	56513532	+	0	NA	intron (NM_001303125, intron 2 of 2)	intron (NM_001303125, intron 2 of 2)	938	NM_001303125	84872	Hs.632706	NM_032786	ENSG00000135482	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding
1.36083-10	chr11	72128964	72129463	+	0	NA	intron (NM_001258394, intron 2 of 17)	intron (NM_001258394, intron 2 of 17)	16515	NM_001258392	81570	Hs.523877	NM_030813	ENSG00000162129	CLPB	ANKCLB|HSP78|MEGCANN|MGCA7|SKD3	ClpB homolog, mitochondrial AAA ATPase chaperonin	protein-coding
4.36519-16	chr21	37535779	37536278	+	0	NA	promoter-TSS (NM_005128)	promoter-TSS (NM_005128)	-811	NM_005128	9980	Hs.204575	NM_005128	ENSG00000142197	DOPEY2	21orf5|C21orf5	dopey family member 2	protein-coding
1.45694-10	chr12	23237536	23238035	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-90785	NR_120471	101928441	Hs.129111	NR_120471	ENSG00000256321	LOC101928441	-	uncharacterized LOC101928441	ncRNA
0.2365-19	chr7	86688893	86689392	+	0	NA	promoter-TSS (NM_001142749)	promoter-TSS (NM_001142749)	-128	NM_001142749	222223	Hs.208093	NM_152748	ENSG00000164659	KIAA1324L	EIG121L	KIAA1324 like	protein-coding
3.63512-18	chr17	17942338	17942837	+	0	NA	promoter-TSS (NM_145691)	promoter-TSS (NM_145691)	-24	NM_024052	79018	Hs.187422	NM_024052	ENSG00000141034	GID4	C17orf39|VID24	GID complex subunit 4 homolog	protein-coding
7.72113-13	chrX	73387516	73388015	+	0	NA	intron (NR_028379, intron 5 of 6)	SVA_D|Other|Other	50531	NR_030398	693122		NR_030398	ENSG00000202566	MIR421	MIRN421|hsa-mir-421	microRNA 421	ncRNA
0.118872-52	chrX	47049890	47050389	+	0	NA	promoter-TSS (NM_153280)	promoter-TSS (NM_153280)	-60	NM_153280	7317	Hs.533273	NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X	ubiquitin like modifier activating enzyme 1	protein-coding
10.5998	chr4	26175178	26175677	+	0	NA	Intergenic	L2c|LINE|L2	-145905	NM_005349	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
11.8243-3	chr21	40278925	40279424	+	0	NA	intron (NR_120405, intron 2 of 3)	intron (NR_120405, intron 2 of 3)	31179	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA
2.53366-2	chr13	79980309	79980808	+	0	NA	promoter-TSS (NM_001286632)	promoter-TSS (NM_001286632)	114	NR_038991	100505538	Hs.600720	NR_038991	ENSG00000227354	RBM26-AS1	-	RBM26 antisense RNA 1	ncRNA
2.21126-6	chr6	89692353	89692852	+	0	NA	Intergenic	Intergenic	-19254	NM_001286426	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
4.14539-3	chr3	15901333	15901832	+	0	NA	promoter-TSS (NM_015199)	promoter-TSS (NM_015199)	-529	NM_015199	23243	Hs.335239	NM_015199	ENSG00000206560	ANKRD28	PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
4.25969-17	chr7	22925360	22925859	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	29377	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
0.555173-29	chr9	66463084	66463583	+	0	NA	intron (NR_121647, intron 2 of 4)	intron (NR_121647, intron 2 of 4)	6044	NR_121647	103352539	Hs.351215	NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
0.925886-8	chr1	245973962	245974461	+	0	NA	intron (NM_001167740, intron 10 of 11)	intron (NM_001167740, intron 10 of 11)	606503	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
17.6195	chr6	148262135	148262634	+	0	NA	Intergenic	Intergenic	-331028	NM_001346505	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
3.01899-12	chr5	19180416	19180915	+	0	NA	Intergenic	Intergenic	705716	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
3.06273-6	chr2	122494268	122494767	+	0	NA	promoter-TSS (NM_032390)	promoter-TSS (NM_032390)	-14	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
0.204516-8	chr9	133322569	133323068	+	0	NA	intron (NM_054012, intron 1 of 14)	intron (NM_054012, intron 1 of 14)	2724	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
0.0305075-34	chr19	50934752	50935251	+	0	NA	TTS (NM_001243998)	TTS (NM_001243998)	-1159	NM_004533	4606	Hs.85937	NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF	myosin binding protein C, fast type	protein-coding
15.3313-3	chr6	144736104	144736603	+	0	NA	intron (NM_007124, intron 2 of 73)	Tigger3b|DNA|TcMar-Tigger	9562	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
11.6368	chr5	38316846	38317345	+	0	NA	intron (NM_152403, intron 1 of 21)	intron (NM_152403, intron 1 of 21)	-26007	NR_046219	100852408	Hs.570954	NR_046219	ENSG00000248730	EGFLAM-AS4	-	EGFLAM antisense RNA 4	ncRNA
0.840728-6	chr1	234852576	234853075	+	0	NA	Intergenic	Intergenic	-6964	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
1.19186-34	chr20	19256332	19256831	+	0	NA	intron (NR_024564, intron 2 of 7)	intron (NR_024564, intron 2 of 7)	8659	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	ncRNA
0.520764-5	chr4	87989862	87990361	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	61958	NM_005935	4299	Hs.480190	NM_005935	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family member 1	protein-coding
1.42065-18	chr14	102430548	102431047	+	0	NA	promoter-TSS (NM_001376)	promoter-TSS (NM_001376)	-68	NM_001376	1778	Hs.614080	NM_001376	ENSG00000197102	DYNC1H1	CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
0.47692-15	chr14	101180465	101180964	+	0	NA	Intergenic	Intergenic	-12488	NM_001317172	8788	Hs.116631	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta like non-canonical Notch ligand 1	protein-coding
36.6154-3	chr7	15085739	15086238	+	0	NA	Intergenic	Intergenic	-204913	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
2.62807-3	chr13	99495006	99495505	+	0	NA	intron (NM_015296, intron 38 of 55)	intron (NM_015296, intron 38 of 55)	10917	NR_046663	100874096	Hs.578066	NR_046663	ENSG00000229918	DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
3.34419-10	chr14	57524493	57524992	+	0	NA	Intergenic	Intergenic	-210864	NM_018229	55745	Hs.597349	NM_018229	ENSG00000053770	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor related protein complex 5 mu 1 subunit	protein-coding
0.428718-25	chr7	157691945	157692444	+	0	NA	intron (NM_130843, intron 10 of 21)	intron (NM_130843, intron 10 of 21)	44917	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
0.535477-2	chr2	1128213	1128712	+	0	NA	intron (NM_018968, intron 4 of 16)	intron (NM_018968, intron 4 of 16)	-181384	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA
7.07744-7	chr1	84367156	84367655	+	0	NA	intron (NM_024686, intron 18 of 20)	L2a|LINE|L2	-40726	NR_119375	101927587	Hs.621230	NR_119375	ENSG00000233008	LINC01725	-	long intergenic non-protein coding RNA 1725	ncRNA
5.27244-6	chr3	41348382	41348881	+	0	NA	intron (NR_136342, intron 33 of 34)	SVA_D|Other|Other	107689	NM_001904	1499	Hs.476018	NM_001904	ENSG00000168036	CTNNB1	CTNNB|MRD19|armadillo	catenin beta 1	protein-coding
0.624821-9	chr13	67231559	67232058	+	0	NA	intron (NM_020403, intron 2 of 3)	intron (NM_020403, intron 2 of 3)	-167493	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
1.45087-11	chr3	170136670	170137169	+	0	NA	exon (NM_005602, exon 1 of 3)	exon (NM_005602, exon 1 of 3)	266	NM_005602	5010	Hs.31595	NM_005602	ENSG00000013297	CLDN11	OSP|OTM	claudin 11	protein-coding
4.50997	chr4	122198688	122199187	+	0	NA	Intergenic	Intergenic	-50316	NM_001244764	79931	Hs.208206	NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
1.60522	chr8	41480350	41480849	+	0	NA	3' UTR (NM_178819, exon 13 of 13)	3' UTR (NM_178819, exon 13 of 13)	24279	NM_152568	157848		NM_152568	ENSG00000165066	NKX6-3	NKX6.3	NK6 homeobox 3	protein-coding
0.301184-5	chr8	37494728	37495227	+	0	NA	Intergenic	Intergenic	-58292	NM_025069	80139	Hs.288042	NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
0.798767-7	chr4	162694039	162694538	+	0	NA	intron (NM_020116, intron 5 of 15)	L1PB|LINE|L1	-249597	NR_125888	101928052	Hs.647993	NR_125888	ENSG00000249419	LOC101928052	-	uncharacterized LOC101928052	ncRNA
0.649968-4	chr1	156571084	156571583	+	0	NA	promoter-TSS (NM_182679)	promoter-TSS (NM_182679)	-54	NM_182679	54865	Hs.193832	NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4	protein-coding
0.462403-7	chr17	73285023	73285522	+	0	NA	intron (NM_001126121, intron 1 of 7)	CpG	258	NM_001126121	60386	Hs.514470	NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
1.92465-20	chr16	77756155	77756654	+	0	NA	promoter-TSS (NM_001105663)	promoter-TSS (NM_001105663)	15	NM_001243660	283927	Hs.282665	NM_001105663	ENSG00000140876	NUDT7	-	nudix hydrolase 7	protein-coding
3.94695-5	chr4	141072911	141073410	+	0	NA	intron (NM_018717, intron 1 of 5)	CpG	2073	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
1.29596-24	chr6	149887038	149887537	+	0	NA	promoter-TSS (NM_138785)	promoter-TSS (NM_138785)	-241	NM_138785	116254	Hs.438872	NM_138785	ENSG00000055211	GINM1	C6orf72|dJ12G14.2	glycoprotein integral membrane 1	protein-coding
3.41989-3	chr20	10491801	10492300	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	76099	NM_001009608	128710	Hs.668782	NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
0.525663-2	chr14	89771527	89772026	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	111678	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
0.127808-35	chr15	63334391	63334890	+	0	NA	promoter-TSS (NM_001301244)	promoter-TSS (NM_001301244)	-198	NM_001018020	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
1.39662-16	chr17	46048393	46048892	+	0	NA	intron (NM_176096, intron 1 of 13)	CpG	320	NM_001278198	80279	Hs.20157	NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
0.814455-2	chr5	23208942	23209441	+	0	NA	Intergenic	LTR41|LTR|ERVL	-298527	NM_020227	56979	Hs.283096	NM_020227	ENSG00000164256	PRDM9	KMT8B|MEISETZ|MSBP3|PFM6|ZNF899	PR/SET domain 9	protein-coding
18.4164-2	chr3	71081089	71081588	+	0	NA	intron (NM_032682, intron 11 of 20)	intron (NM_032682, intron 11 of 20)	32736	NM_001244813	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
0.599818-24	chr5	167014714	167015213	+	0	NA	intron (NM_001122679, intron 2 of 28)	intron (NM_001122679, intron 2 of 28)	-166978	NM_001080428	57451	Hs.631957	NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2|ten-2	teneurin transmembrane protein 2	protein-coding
0.655015-3	chr1	202252434	202252933	+	0	NA	intron (NM_021636, intron 6 of 17)	intron (NM_021636, intron 6 of 17)	58411	NM_014176	29089	Hs.5199	NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
1.15771-22	chr3	30054350	30054849	+	0	NA	Intergenic	Intergenic	-78952	NR_046556	100873977	Hs.581453	NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
1.67491-2	chr10	18429106	18430249	+	0	NA	promoter-TSS (NM_001167945)	promoter-TSS (NM_001167945)	-65	NM_201572	783	Hs.59093	NM_000724	ENSG00000165995	CACNB2	CACNLB2|CAVB2|MYSB	calcium voltage-gated channel auxiliary subunit beta 2	protein-coding
0.428718-7	chr5	10627297	10628261	+	0	NA	intron (NM_001164440, intron 2 of 3)	intron (NM_001164440, intron 2 of 3)	63344	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
2.02732-11	chr6	133874718	133875217	+	0	NA	intron (NR_109982, intron 5 of 8)	intron (NR_109982, intron 5 of 8)	-267318	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
0.305841-15	chr1	53098523	53099022	+	0	NA	promoter-TSS (NR_135157)	promoter-TSS (NR_135157)	-244	NR_135156	348378	Hs.424589	NM_001042693	ENSG00000182183	FAM159A	PRO7171|WWLS2783	family with sequence similarity 159 member A	protein-coding
15.0585	chr12	63310745	63311244	+	0	NA	intron (NM_020700, intron 1 of 9)	intron (NM_020700, intron 1 of 9)	17671	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
5.33132-2	chr18	56074401	56074900	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-43656	NR_029667	406906		NR_029667	ENSG00000267391	MIR122	MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122	microRNA 122	ncRNA
5.98599-10	chr1	148929472	148929971	+	0	NA	promoter-TSS (NR_027354)	promoter-TSS (NR_027354)	-684	NR_027354	645166	Hs.744183	NR_027354		LOC645166	-	lymphocyte-specific protein 1 pseudogene	pseudo
19.2812-2	chr19	30162555	30163054	+	0	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	6477	NM_024310	79156	Hs.466383	NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
14.8945-4	chr2	220648881	220649380	+	0	NA	Intergenic	LTR1B|LTR|ERV1	122156	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
5.25784-17	chrX	13212321	13212820	+	0	NA	Intergenic	Intergenic	-116201	NR_046087	100093698	Hs.643612	NR_046087	ENSG00000231216	GS1-600G8.3	-	unknown transcript	ncRNA
1.58641-4	chr6	32500246	32500745	+	0	NA	Intergenic	SVA_B|Other|Other	-2489	NM_002125	3127	Hs.485130	NM_002125	ENSG00000198502	HLA-DRB5	-	major histocompatibility complex, class II, DR beta 5	protein-coding
3.54578	chr9	135645364	135645863	+	0	NA	intron (NM_152572, intron 11 of 12)	CpG	-99825	NM_138620	64794	Hs.660767	NM_022779	ENSG00000125485	DDX31	PPP1R25	DEAD-box helicase 31	protein-coding
8.35647-3	chr20	5131200	5131699	+	0	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	24042	NM_003818	8760	Hs.126857	NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
0.665127-7	chr11	122930914	122931413	+	0	NA	intron (NM_153201, intron 3 of 7)	intron (NM_153201, intron 3 of 7)	1880	NM_153201	3312	Hs.180414	NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
1.17475-14	chr6	124288885	124289384	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	164143	NM_001300738	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
0.371573-8	chr6	6694505	6695004	+	0	NA	Intergenic	LTR1|LTR|ERV1	-71695	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
1.43271-4	chr2	217547175	217547674	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	12848	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
0.685421-5	chr1	112024155	112024654	+	0	NA	Intergenic	Intergenic	7913	NM_001300834	128346	Hs.288010	NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
1.31944-2	chr10	12237932	12238431	+	0	NA	promoter-TSS (NM_014142)	promoter-TSS (NM_014142)	-38	NM_001321647	11164	Hs.555956	NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hNUDT5	nudix hydrolase 5	protein-coding
0.560111-21	chr5	37837387	37837886	+	0	NA	intron (NM_000514, intron 1 of 2)	CpG	-1707	NM_001190468	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
3.60514-8	chr8	139434978	139435477	+	0	NA	intron (NM_015912, intron 1 of 19)	L1PA15|LINE|L1	73838	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135 member B	protein-coding
0.404816-14	chr3	33173016	33173515	+	0	NA	intron (NM_006371, intron 4 of 6)	intron (NM_006371, intron 4 of 6)	17815	NM_006371	10491	Hs.517888	NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
8.96196-11	chr17	80454881	80455380	+	0	NA	Intergenic	CpG	-22464	NM_004514	3607	Hs.591140	NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
32.4949	chr1	55804073	55804572	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	113008	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
10.0745-2	chr22	46748890	46749389	+	0	NA	intron (NM_018006, intron 7 of 10)	intron (NM_018006, intron 7 of 10)	17841	NM_001282785	55687	Hs.439524	NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1|TRNT1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding
7.85156-16	chr12	123856944	123857443	+	0	NA	Intergenic	SVA_A|Other|Other	-7437	NM_018183	55206	Hs.7012	NM_018183	ENSG00000139697	SBNO1	MOP3|Sno	strawberry notch homolog 1	protein-coding
0.291884-28	chr14	91835812	91836311	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	48127	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
16.7778-4	chr18	70359671	70360170	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-148197	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
0.163737-21	chr12	3647535	3648034	+	0	NA	intron (NM_019854, intron 1 of 9)	intron (NM_019854, intron 1 of 9)	-45799	NR_126055	100129223	Hs.586788	NR_126055		THCAT155	-	thyroid cancer-associated transcript 155	ncRNA
9.17215-9	chr13	95966588	95967087	+	0	NA	Intergenic	Intergenic	-13137	NM_005845	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
1.30768-9	chr19	18539178	18539677	+	0	NA	intron (NM_001009998, intron 4 of 16)	intron (NM_001009998, intron 4 of 16)	8692	NM_001253389	51477	Hs.405873	NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
11.4935	chr21	43737467	43737966	+	0	NA	Intergenic	Intergenic	-2010	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
6.42065-7	chr11	20385045	20385916	+	0	NA	promoter-TSS (NM_001098522)	promoter-TSS (NM_001098522)	77	NM_001098522	10553	Hs.90753	NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
11.7457-7	chr9	118017024	118017523	+	0	NA	intron (NM_017418, intron 2 of 7)	intron (NM_017418, intron 2 of 7)	113176	NM_017418	50514	Hs.148841	NM_017418	ENSG00000173077	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
5.22879-11	chr8	70633039	70633538	+	0	NA	intron (NM_001146009, intron 3 of 7)	MLT1J|LTR|ERVL-MaLR	112116	NM_001146009	81796	Hs.152460	NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
12.6122-4	chr6	3518340	3518839	+	0	NA	Intergenic	Intergenic	-61796	NM_001286456	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
0.0612309-35	chr20	45891304	45891803	+	0	NA	intron (NM_001281783, intron 11 of 21)	intron (NM_001281783, intron 11 of 21)	-55693	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
0.231917-9	chr1	197884319	197884818	+	0	NA	intron (NM_001014434, intron 1 of 5)	intron (NM_001014434, intron 1 of 5)	-1949	NM_020204	56956	Hs.442578	NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
4.36519-13	chr9	136941220	136941719	+	0	NA	Intergenic	SVA_B|Other|Other	-8328	NM_007371	8019	Hs.522472	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
3.78824-3	chr4	124951310	124951809	+	0	NA	Intergenic	Intergenic	256140	NR_027106	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
4.05607-12	chr19	12885726	12886225	+	0	NA	intron (NM_013312, intron 1 of 22)	CpG	459	NM_013312	29911	Hs.30792	NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
0.94744-4	chr14	50582878	50583377	+	0	NA	TTS (NM_006939)	TTS (NM_006939)	170	NM_024558	79609	Hs.558541	NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
0.366845-11	chrX	51636352	51636851	+	0	NA	promoter-TSS (NM_006986)	promoter-TSS (NM_006986)	-97	NM_006986	9500	Hs.5258	NM_006986	ENSG00000179222	MAGED1	DLXIN-1|NRAGE	MAGE family member D1	protein-coding
0.204516-14	chr17	48643080	48643579	+	0	NA	intron (NM_001256325, intron 1 of 35)	intron (NM_001256325, intron 1 of 35)	-3860	NR_038439	253962	Hs.558704	NR_038439	ENSG00000250107	CACNA1G-AS1	-	CACNA1G antisense RNA 1	ncRNA
0.0392635-36	chr2	162275117	162275616	+	0	NA	intron (NM_006593, intron 3 of 5)	CpG	2761	NM_006593	10716	Hs.210862	NM_006593	ENSG00000136535	TBR1	TBR-1|TES-56	T-box, brain 1	protein-coding
25.0031	chr5	14296767	14297266	+	0	NA	intron (NM_007118, intron 6 of 56)	intron (NM_007118, intron 6 of 56)	153205	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
2.09012-4	chr16	89355753	89356252	+	0	NA	intron (NR_045839, intron 8 of 9)	intron (NR_045839, intron 8 of 9)	-6534	NR_136339	105371414	Hs.657381	NR_136339		LOC105371414	-	uncharacterized LOC105371414	ncRNA
0.268721-56	chr10	45921538	45922037	+	0	NA	intron (NM_001256154, intron 6 of 12)	intron (NM_001256154, intron 6 of 12)	26782	NR_120674	102724323	Hs.559151	NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
1.37869-5	chr1	183885029	183885528	+	0	NA	intron (NM_001297670, intron 15 of 17)	intron (NM_001297670, intron 15 of 17)	111063	NM_001297671	23179	Hs.497148	NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
7.4958-7	chr16	82203542	82204395	+	0	NA	promoter-TSS (NM_005792)	promoter-TSS (NM_005792)	-139	NM_005792	10200	Hs.344400	NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
3.74688-5	chr22	20726745	20727244	+	0	NA	Intergenic	L1M3de|LINE|L1	-21411	NR_046282	7625	Hs.517418	NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
11.6622-4	chr18	20715116	20715615	+	0	NA	promoter-TSS (NM_001100619)	promoter-TSS (NM_001100619)	-362	NM_001100619	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
9.35542-2	chr6	151215947	151216446	+	0	NA	intron (NM_015440, intron 7 of 27)	intron (NM_015440, intron 7 of 27)	28727	NM_001242768	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
0.33389-13	chr3	190591827	190592326	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-3643	NR_024343	100170222	Hs.717310	NR_024343		SNAR-I	snaR-3	small ILF3/NF90-associated RNA I	snRNA
1.03474-17	chr13	115060493	115060992	+	0	NA	intron (NM_023011, intron 7 of 9)	intron (NM_023011, intron 7 of 9)	13683	NM_080687	65110	Hs.533855	NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding
0.132283	chr9	104453901	104454400	+	0	NA	intron (NM_133445, intron 1 of 8)	MIRb|SINE|MIR	46712	NM_133445	116443	Hs.654783	NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
10.6148-4	chr5	167894963	167895462	+	0	NA	intron (NM_015238, intron 22 of 22)	intron (NM_015238, intron 22 of 22)	-18251	NM_002887	5917	Hs.654907	NM_002887	ENSG00000113643	RARS	ArgRS|DALRD1|HLD9	arginyl-tRNA synthetase	protein-coding
3.18759	chr8	26428632	26429131	+	0	NA	intron (NM_001197293, intron 1 of 13)	intron (NM_001197293, intron 1 of 13)	-6459	NM_001386	1808	Hs.593187	NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
0.305841-5	chr13	98085159	98085658	+	0	NA	Intergenic	CpG	-1067	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
3.24222-11	chr1	232018976	232019475	+	0	NA	intron (NM_001164541, intron 9 of 9)	intron (NM_001164541, intron 9 of 9)	-42355	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
0.545314-23	chr2	182549283	182549782	+	0	NA	Intergenic	Intergenic	-4140	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
0.296531-105	chr8	86770620	86771119	+	0	NA	Intergenic	L1PA5|LINE|L1	5259	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog-like 2, pseudogene	pseudo
19.3554-2	chr17	27476340	27476839	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-9192	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
10.0656-3	chr11	32134688	32135650	+	0	NA	Intergenic	Intergenic	22692	NM_002901	5954	Hs.97887	NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
9.87163-13	chr16	82676639	82677138	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	16489	NM_001220491	1012	Hs.654386	NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
0.154727-7	chr1	203185237	203185736	+	0	NA	non-coding (NR_045784, exon 13 of 13)	non-coding (NR_045784, exon 13 of 13)	13374	NM_003465	1118	Hs.201688	NM_003465	ENSG00000133063	CHIT1	CHI3|CHIT|CHITD	chitinase 1	protein-coding
3.47754-8	chr7	912894	913393	+	0	NA	3' UTR (NM_001171944, exon 17 of 17)	3' UTR (NM_001171944, exon 17 of 17)	-3048	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|CGI-20|TRC35	golgi to ER traffic protein 4	protein-coding
0.145735-13	chr4	2937068	2937567	+	0	NA	promoter-TSS (NR_015453)	promoter-TSS (NR_015453)	44	NR_015453	317648	Hs.398178	NR_015453	ENSG00000249673	NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
0.227338-14	chr12	13251015	13251514	+	0	NA	intron (NM_001206842, intron 1 of 5)	intron (NM_001206842, intron 1 of 5)	-2524	NM_031289	83445	Hs.240053	NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
114.134	chr8	128836318	128836817	+	0	NA	intron (NR_003367, intron 1 of 8)	MIRb|SINE|MIR	28359	NR_031609	100302185		NR_031609	ENSG00000249859	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
3.08919-3	chr12	102224586	102225085	+	0	NA	promoter-TSS (NM_024312)	promoter-TSS (NM_024312)	-190	NM_024312	79158	Hs.46850	NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase alpha and beta subunits	protein-coding
2.13959-10	chr8	128366224	128366723	+	0	NA	intron (NR_117099, intron 3 of 3)	intron (NR_117099, intron 3 of 3)	-46171	NR_109834	101805488	Hs.745578	NR_109834	ENSG00000280997	CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2 (non-protein coding)	ncRNA
18.5699-2	chr5	131594773	131595272	+	0	NA	intron (NM_003687, intron 1 of 6)	intron (NM_003687, intron 1 of 6)	1671	NM_003687	8572	Hs.424312	NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
0.070049-26	chr13	115000170	115000669	+	0	NA	promoter-TSS (NM_001318517)	promoter-TSS (NM_001318517)	99	NM_001330104	8881	Hs.374127	NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
26.6354	chr8	8729450	8729949	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	21432	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
2.79841-3	chr6	52416564	52417430	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	24865	NM_012288	9697	Hs.520182	NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
0.254883-8	chr20	42839302	42839801	+	0	NA	promoter-TSS (NR_038339)	promoter-TSS (NR_038339)	-5	NM_016470	51526	Hs.75798	NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
0.675262-14	chr6	135996958	135997457	+	0	NA	intron (NR_026805, intron 3 of 3)	intron (NR_026805, intron 3 of 3)	-175627	NM_018945	27115	Hs.744230	NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
6.30784-8	chr7	138005480	138005979	+	0	NA	Intergenic	MER61A|LTR|ERV1	-139350	NM_015905	8805	Hs.490287	NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
1.42065	chr18	22006454	22006953	+	0	NA	promoter-TSS (NM_018439)	promoter-TSS (NM_018439)	94	NM_018439	55364	Hs.515317	NM_018439	ENSG00000154059	IMPACT	RWDD5	impact RWD domain protein	protein-coding
3.36299-9	chr19	11413720	11414219	+	0	NA	intron (NM_001282510, intron 3 of 5)	SVA_D|Other|Other	7154	NM_001282509	26526	Hs.579784	NM_012466	ENSG00000130167	TSPAN16	TM-8|TM4-B|TM4SF16	tetraspanin 16	protein-coding
10.2228	chr10	35979494	35979993	+	0	NA	Intergenic	Intergenic	-49381	NM_031866	8325	Hs.302634	NM_031866	ENSG00000177283	FZD8	FZ-8|hFZ8	frizzled class receptor 8	protein-coding
0.783135-12	chr7	83057203	83057702	+	0	NA	intron (NM_001178129, intron 4 of 16)	intron (NM_001178129, intron 4 of 16)	213295	NM_001178129	9723	Hs.528721	NM_012431	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	semaphorin 3E	protein-coding
1.53663-10	chr12	42631887	42632386	+	0	NA	promoter-TSS (NM_001320080)	promoter-TSS (NM_001320080)	34	NM_001190980	10138	Hs.649195	NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
0.0261362-9	chr18	64771845	64772344	+	0	NA	Intergenic	Intergenic	23273	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
0.409586-42	chr11	27742054	27742553	+	0	NA	promoter-TSS (NM_170732)	promoter-TSS (NM_170732)	23	NM_001143805	627	Hs.502182	NM_001709	ENSG00000176697	BDNF	ANON2|BULN2	brain derived neurotrophic factor	protein-coding
7.74691-17	chr19	14582895	14583394	+	0	NA	TTS (NM_000955)	TTS (NM_000955)	3030	NM_000955	5731	Hs.159360	NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
10.5799-2	chr7	146380571	146381070	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	413881	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
0.0833099-34	chr22	18893521	18894020	+	0	NA	promoter-TSS (NM_005675)	promoter-TSS (NM_005675)	34	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
1.37869-24	chr8	134300314	134300813	+	0	NA	intron (NM_006096, intron 1 of 15)	intron (NM_006096, intron 1 of 15)	8984	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
2.93282-3	chr1	192454814	192455313	+	0	NA	Intergenic	MamSINE1|SINE|tRNA	-89794	NM_002922	5996	Hs.75256	NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G-protein signaling 1	protein-coding
2.58848-16	chr1	10532396	10532895	+	0	NA	promoter-TSS (NM_004401)	promoter-TSS (NM_004401)	-32	NM_213566	1676	Hs.484782	NM_004401	ENSG00000160049	DFFA	DFF-45|DFF1|ICAD	DNA fragmentation factor subunit alpha	protein-coding
0.649968-26	chr19	2235252	2235751	+	0	NA	TTS (NR_106847)	TTS (NR_106847)	424	NR_106847	102466736		NR_106847	ENSG00000104886	MIR6789	hsa-mir-6789	microRNA 6789	ncRNA
4.50997-3	chr2	228718577	228719076	+	0	NA	Intergenic	Intergenic	-17266	NM_178821	164781	Hs.424594	NM_178821	ENSG00000123977	DAW1	ODA16|WDR69	dynein assembly factor with WD repeats 1	protein-coding
0.94744-9	chr17	76409251	76409750	+	0	NA	intron (NR_110601, intron 6 of 8)	intron (NR_110601, intron 6 of 8)	34801	NR_110602	9489	Hs.654671	NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
0.404816	chr22	23412057	23412556	+	0	NA	promoter-TSS (NM_002073)	promoter-TSS (NM_002073)	-363	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	-	G protein subunit alpha z	protein-coding
0.423927-17	chr7	102158136	102158635	+	0	NA	promoter-TSS (NM_001277335)	promoter-TSS (NM_001277335)	-161	NM_001277335	100271927	Hs.530089	NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
53.4486	chr5	31944716	31945215	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	-8700	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
0.685421-18	chr2	20424298	20424797	+	0	NA	intron (NM_001006946, intron 2 of 5)	CpG	380	NM_002997	6382	Hs.224607	NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
0.685421-3	chr1	33726056	33726555	+	0	NA	intron (NM_152493, intron 1 of 8)	intron (NM_152493, intron 1 of 8)	4131	NM_152493	149076	Hs.743358	NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
7.23538-5	chr8	110659762	110660261	+	0	NA	3' UTR (NM_001317989, exon 2 of 2)	3' UTR (NM_001317989, exon 2 of 2)	1121	NM_017786	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
2.62013-20	chr9	131315025	131315524	+	0	NA	intron (NM_003127, intron 1 of 55)	CpG	437	NM_001195532	6709	Hs.372331	NM_003127	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
1.9044	chr11	66360079	66360578	+	0	NA	promoter-TSS (NM_005125)	promoter-TSS (NM_005125)	226	NM_018219	55231	Hs.121072	NM_018219	ENSG00000182791	CCDC87	-	coiled-coil domain containing 87	protein-coding
4.77556-5	chr10	75351609	75352108	+	0	NA	promoter-TSS (NM_001320437)	promoter-TSS (NM_001320437)	-750	NR_135249	159195	Hs.657355	NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
4.7237-3	chr8	62612449	62612948	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	-10290	NM_020164	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
59.2082	chr2	134595179	134595678	+	0	NA	Intergenic	Intergenic	-269397	NM_207363	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK associated protein 5	protein-coding
2.94136-3	chr12	66569035	66569534	+	0	NA	Intergenic	SVA_A|Other|Other	-5432	NM_016056	51643	Hs.505934	NM_016056	ENSG00000155957	TMBIM4	CGI-119|GAAP|LFG4|S1R|ZPRO	transmembrane BAX inhibitor motif containing 4	protein-coding
18.2681-7	chr18	54528319	54528818	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	209952	NM_052834	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
1.59267-3	chr16	84771850	84772349	+	0	NA	intron (NR_073577, intron 2 of 11)	intron (NR_073577, intron 2 of 11)	38544	NM_005153	9100	Hs.136778	NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
2.32102-6	chr1	110881251	110881750	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	293	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	ncRNA
3.39135-2	chr8	91696229	91696728	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-38345	NM_001146273	169200	Hs.567759	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
3.08919	chr6	99939912	99940411	+	0	NA	intron (NM_032929, intron 5 of 7)	intron (NM_032929, intron 5 of 7)	23091	NM_001346021	85015	Hs.143410	NM_032929	ENSG00000123552	USP45	-	ubiquitin specific peptidase 45	protein-coding
3.40084	chrX	51023332	51023831	+	0	NA	Intergenic	SVA_D|Other|Other	-51502	NM_153183	170685	Hs.375178	NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3-alpha|DIPP3a	nudix hydrolase 10	protein-coding
1.70053-12	chr19	1081991	1082941	+	0	NA	intron (NM_001321232, intron 19 of 22)	(CTGGGG)n|Simple_repeat|Simple_repeat	5833	NM_001282334	23526	Hs.465521	NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
0.11441-9	chr20	6809425	6809924	+	0	NA	Intergenic	Intergenic	60929	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
37.7989-2	chrX	107468207	107468706	+	0	NA	intron (NM_001847, intron 3 of 44)	intron (NM_001847, intron 3 of 44)	133559	NR_135608	115201	Hs.8763	NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2	autophagy related 4A cysteine peptidase	protein-coding
10.2826-3	chrUn_gl000222	83847	84346	+	0	NA	Intergenic	CpG	-2745	NR_040005	401074	Hs.528540	NR_040004	ENSG00000242516	LINC00960	-	long intergenic non-protein coding RNA 960	ncRNA
15.9688-2	chr14	77477519	77478018	+	0	NA	Intergenic	MIR|SINE|MIR	17274	NM_024496	64207	Hs.179260	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein like	protein-coding
1.16339-16	chr7	54907232	54907731	+	0	NA	Intergenic	Intergenic	80475	NR_110040	100996654	Hs.127991	NR_110040		LOC100996654	-	uncharacterized LOC100996654	ncRNA
0.123337-42	chr20	34638672	34639171	+	0	NA	promoter-TSS (NR_027451)	promoter-TSS (NR_027451)	-39	NR_027451	647979	Hs.743232	NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
4.86782-7	chr10	96122447	96122946	+	0	NA	promoter-TSS (NM_022451)	promoter-TSS (NM_022451)	37	NM_022451	64318	Hs.74899	NM_022451	ENSG00000173145	NOC3L	AD24|C10orf117|FAD24	NOC3 like DNA replication regulator	protein-coding
0.00869459	chr5	96196720	96197219	+	0	NA	Intergenic	Intergenic	-14674	NR_137637	64167	Hs.482910	NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
4.7237-13	chr3	102973144	102973643	+	0	NA	Intergenic	SVA_D|Other|Other	269567	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
2.13959-7	chr6	52281284	52281783	+	0	NA	Intergenic	Intergenic	-3461	NR_033327	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
3.67543-7	chr8	72170393	72170892	+	0	NA	intron (NM_172060, intron 9 of 15)	intron (NM_172060, intron 9 of 15)	98104	NM_172059	2138	Hs.444971	NM_000503	ENSG00000104313	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
6.14394-6	chr9	131144350	131144849	+	0	NA	intron (NM_030914, intron 2 of 4)	intron (NM_030914, intron 2 of 4)	-10301	NR_039815	100616335		NR_039815	ENSG00000283335	MIR219B	MIR2964A|hsa-mir-219b|mir-219b	microRNA 219b	ncRNA
1.10698	chr2	201244330	201244829	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	70906	NM_001282744	26010	Hs.120323	NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
0.0921731-30	chr2	233287610	233288109	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	16307	NM_031313	251	Hs.333509	NM_031313	ENSG00000163286	ALPPL2	ALPG|ALPPL|GCAP	alkaline phosphatase, placental like 2	protein-coding
7.42321	chr16	76617301	76617800	+	0	NA	Intergenic	Intergenic	-51345	NR_110934	101928203	Hs.737035	NR_110934	ENSG00000250514	LINC02125	-	long intergenic non-protein coding RNA 2125	ncRNA
2.96709-16	chr7	50107563	50108062	+	0	NA	intron (NM_007009, intron 3 of 7)	HERV15-int|LTR|ERV1	25048	NM_007009	11055	Hs.388841	NM_007009	ENSG00000042813	ZPBP	ZPBP1	zona pellucida binding protein	protein-coding
0.555173-22	chr17	36862212	36862711	+	0	NA	intron (NM_005937, intron 1 of 19)	intron (NM_005937, intron 1 of 19)	588	NM_005937	4302	Hs.91531	NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger domain containing	protein-coding
5.48214-7	chr1	165098730	165099229	+	0	NA	Intergenic	Intergenic	226499	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
3.85103-3	chr22	18808126	18808625	+	0	NA	Intergenic	Intergenic	-28901	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
34.7108	chr16	49576149	49576648	+	0	NA	intron (NM_001330533, intron 3 of 5)	intron (NM_001330533, intron 3 of 5)	-23902	NR_144553	1596	Hs.684517	NR_144553		ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
28.7615	chr13	92601137	92601636	+	0	NA	intron (NM_004466, intron 6 of 7)	intron (NM_004466, intron 6 of 7)	403074	NR_120382	100873970	Hs.567269	NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
2.62013	chrY	2575298	2575797	+	0	NA	intron (NM_001122898, intron 1 of 8).2	intron (NM_001122898, intron 1 of 8).2	16373	NR_135623	4267	Hs.653349	NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule	protein-coding
5.22879-12	chr2	120022647	120023146	+	0	NA	3' UTR (NM_018234, exon 6 of 6)	3' UTR (NM_018234, exon 6 of 6)	-16249	NR_046721	100874111	Hs.704682	NR_046721	ENSG00000229867	STEAP3-AS1	-	STEAP3 antisense RNA 1	ncRNA
4.78862-6	chr17	19043847	19044346	+	0	NA	intron (NM_001129778, intron 3 of 3)	intron (NM_001129778, intron 3 of 3)	13314	NM_001129778	400581	Hs.647426	NM_001129778	ENSG00000189152	GRAPL	-	GRB2 related adaptor protein like	protein-coding
0.338583-28	chr16	85683201	85683700	+	0	NA	intron (NM_014615, intron 3 of 15)	intron (NM_014615, intron 3 of 15)	36608	NM_001278184	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
4.31798-13	chr2	121437749	121438248	+	0	NA	Intergenic	Intergenic	-116869	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
0.486625-13	chr16	30968303	30968802	+	0	NA	promoter-TSS (NM_014712)	promoter-TSS (NM_014712)	-63	NM_014712	9739	Hs.297483	NM_014712	ENSG00000099381	SETD1A	KMT2F|Set1|Set1A	SET domain containing 1A	protein-coding
4.25969-20	chr8	142427699	142428198	+	0	NA	Intergenic	CpG	-3540	NM_007079	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
4.12289-3	chr4	699435	699934	+	0	NA	5' UTR (NM_001317836, exon 1 of 12)	5' UTR (NM_001317836, exon 1 of 12)	154	NM_006315	10336	Hs.144309	NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
0.0966115-13	chr9	132403467	132403966	+	0	NA	intron (NM_017873, intron 1 of 5)	intron (NM_017873, intron 1 of 5)	732	NM_177999	140459	Hs.125037	NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
3.1158-5	chr14	75762677	75763176	+	0	NA	non-coding (NR_038421, exon 3 of 3)	non-coding (NR_038421, exon 3 of 3)	1819	NR_038421	731223	Hs.534624	NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
39.2082	chr9	114200707	114201206	+	0	NA	intron (NM_001080398, intron 7 of 50)	intron (NM_001080398, intron 7 of 50)	46069	NM_001080398	23392	Hs.368255	NM_001080398	ENSG00000136813	KIAA0368	ECM29	KIAA0368	protein-coding
9.70616-6	chr9	133510186	133510685	+	0	NA	intron (NM_003934, intron 17 of 18)	intron (NM_003934, intron 17 of 18)	8751	NR_106915	102465515		NR_106915	ENSG00000277713	MIR6856	hsa-mir-6856	microRNA 6856	ncRNA
3.85103-33	chr7	138423396	138423895	+	0	NA	intron (NM_130840, intron 14 of 20)	intron (NM_130840, intron 14 of 20)	35137	NM_130841	50617	Hs.98967	NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
3.43902-18	chr9	116163444	116163943	+	0	NA	promoter-TSS (NM_000031)	promoter-TSS (NM_000031)	-75	NM_001003945	210	Hs.1227	NM_000031	ENSG00000148218	ALAD	ALADH|PBGS	aminolevulinate dehydratase	protein-coding
0.990869-22	chr11	75873663	75874162	+	0	NA	Intergenic	Intergenic	43662	NM_004626	7481	Hs.108219	NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
0.287242-7	chr9	128138381	128139290	+	0	NA	Intergenic	Intergenic	77666	NM_001282681	26130	Hs.42376	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
0.428718-12	chr1	168053941	168054440	+	0	NA	3' UTR (NM_001267609, exon 7 of 7)	3' UTR (NM_001267609, exon 7 of 7)	51484	NM_001267612	23432	Hs.271809	NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
0.952845-16	chr20	49115828	49116327	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-10781	NM_002827	5770	Hs.417549	NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
3.72634-10	chr19	39997535	39998034	+	0	NA	exon (NM_203486, exon 7 of 9)	exon (NM_203486, exon 7 of 9)	-7969	NM_182704	348303	Hs.319284	NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
3.05395-16	chr6	144539562	144540061	+	0	NA	Intergenic	Intergenic	68157	NM_003764	8676	Hs.118958	NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
0.25028-7	chr14	58893612	58894111	+	0	NA	promoter-TSS (NR_130751)	promoter-TSS (NR_130751)	99	NR_130752	26520	Hs.440525	NM_012460	ENSG00000100575	TIMM9	TIM9|TIM9A	translocase of inner mitochondrial membrane 9	protein-coding
2.54145-5	chr11	44456267	44456766	+	0	NA	Intergenic	Intergenic	-124800	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
1.99283-2	chr4	166793553	166794052	+	0	NA	promoter-TSS (NM_001204760)	promoter-TSS (NM_001204760)	-608	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
4.06714-2	chr2	211495582	211496081	+	0	NA	intron (NM_001122634, intron 11 of 27)	intron (NM_001122634, intron 11 of 27)	13536	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
0.282604-4	chr7	86165613	86166112	+	0	NA	Intergenic	MER50|LTR|ERV1	-107368	NM_000840	2913	Hs.590575	NM_000840	ENSG00000198822	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate metabotropic receptor 3	protein-coding
14.1005	chr9	72695307	72695806	+	0	NA	intron (NM_001347990, intron 2 of 11)	intron (NM_001347990, intron 2 of 11)	37059	NR_125850	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
12.8651	chr5	133223894	133224393	+	0	NA	Intergenic	Intergenic	-25225	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
2.93282-9	chr4	76439338	76439837	+	0	NA	promoter-TSS (NM_001317791)	promoter-TSS (NM_001317791)	53	NM_001278537	25898	Hs.48297	NM_015436	ENSG00000163743	RCHY1	ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363	ring finger and CHY zinc finger domain containing 1	protein-coding
0.76238-9	chr2	207308575	207309074	+	0	NA	intron (NM_003812, intron 1 of 25)	CpG	456	NM_003812	8745	Hs.370287	NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
2.63603-8	chr12	27294949	27295448	+	0	NA	Intergenic	Intergenic	-59743	NM_001080406	728858	Hs.334003	NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
1.80456-7	chr9	81310399	81310898	+	0	NA	Intergenic	Intergenic	398657	NM_021154	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
7.72113-10	chr11	18143082	18143581	+	0	NA	intron (NM_054031, intron 1 of 2)	SVA_D|Other|Other	829	NM_054031	117195	Hs.380177	NM_054031	ENSG00000179826	MRGPRX3	GPCR|MRGX3|SNSR1|SNSR2	MAS related GPR family member X3	protein-coding
17.2354	chr6	69436137	69436636	+	0	NA	intron (NM_001704, intron 3 of 31)	intron (NM_001704, intron 3 of 31)	90754	NM_001704	577	Hs.13261	NM_001704	ENSG00000135298	ADGRB3	BAI3	adhesion G protein-coupled receptor B3	protein-coding
0.199966-10	chr2	95953568	95954067	+	0	NA	intron (NM_001165977, intron 20 of 23)	intron (NM_001165977, intron 20 of 23)	-9255	NM_013434	30818	Hs.437376	NM_013434	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	potassium voltage-gated channel interacting protein 3	protein-coding
2.8567-4	chr12	77015213	77015712	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-61873	NM_001003712	114882	Hs.430849	NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
0.91515-23	chr14	94492385	94492884	+	0	NA	promoter-TSS (NM_023112)	promoter-TSS (NM_023112)	-90	NM_023112	78990	Hs.278815	NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
12.8819-5	chr17	21295905	21296404	+	0	NA	intron (NM_021012, intron 1 of 2)	intron (NM_021012, intron 1 of 2)	-12294	NM_001194958	100134444	Hs.200629	NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium voltage-gated channel subfamily J member 18	protein-coding
2.27678-9	chr4	186063964	186064463	+	0	NA	promoter-TSS (NM_001151)	promoter-TSS (NM_001151)	-204	NM_001151	291	Hs.246506	NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
0.172766-22	chr2	98652945	98653444	+	0	NA	Intergenic	Intergenic	-40840	NM_015348	23505	Hs.469376	NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
0.90444-2	chr16	85091055	85091554	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	-5514	NM_001286565	9764	Hs.301658	NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
5.01689-11	chr14	77614842	77615341	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-6957	NM_174976	283576	Hs.525485	NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type containing 22	protein-coding
1.11259-6	chr3	105247220	105247719	+	0	NA	intron (NM_001243280, intron 3 of 14)	L1PA13|LINE|L1	161912	NM_001243281	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
0.409586-41	chr4	82136585	82137084	+	0	NA	promoter-TSS (NM_001282485)	promoter-TSS (NM_001282485)	-563	NM_006259	5593	Hs.232044	NM_006259	ENSG00000138669	PRKG2	PRKGR2|cGK2|cGKII	protein kinase, cGMP-dependent, type II	protein-coding
5.46682	chr1	113261266	113261765	+	0	NA	Intergenic	CpG	-1674	NM_182759	284467	Hs.439116	NM_182759	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 member A3, C-C motif chemokine like	protein-coding
3.46787-3	chr3	150629478	150629977	+	0	NA	Intergenic	Intergenic	32296	NM_052995	7401	Hs.745448	NM_052995	ENSG00000163646	CLRN1	RP61|USH3|USH3A	clarin 1	protein-coding
7.47147-7	chr20	7684483	7684982	+	0	NA	Intergenic	Intergenic	236361	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
5.22879	chr6	29596359	29596858	+	0	NA	promoter-TSS (NM_021903).3	promoter-TSS (NM_021903).3	-603	NM_021903	2550	Hs.167017	NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
1.73277-12	chr7	50629742	50630241	+	0	NA	intron (NM_001082971, intron 1 of 14)	intron (NM_001082971, intron 1 of 14)	-1223	NM_000790	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
14.2597-3	chr8	128904924	128905423	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	55796	NR_103558	641384	Hs.629674	NM_001037234	ENSG00000280055	TMEM75	-	transmembrane protein 75	ncRNA
1.15771-35	chrX	153657081	153657580	+	0	NA	promoter-TSS (NR_103768)	promoter-TSS (NR_103768)	352	NM_001183	537	Hs.6551	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	ATPase H+ transporting accessory protein 1	protein-coding
0.172766-30	chr2	62683933	62684432	+	0	NA	Intergenic	CpG	49422	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
0.520764-9	chr1	37945147	37945646	+	0	NA	promoter-TSS (NR_106790)	promoter-TSS (NR_106790)	-435	NR_106790	102465438		NR_106790	ENSG00000163874	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
17.6955-3	chr15	48354312	48354811	+	0	NA	Intergenic	Intergenic	-58608	NM_205850	283652	Hs.710240	NM_205850	ENSG00000188467	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 member 5	protein-coding
8.18156-6	chr1	32405350	32405849	+	0	NA	Intergenic	Intergenic	-1611	NM_080391	8073	Hs.470477	NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
4.40093-5	chr2	47254265	47254764	+	0	NA	intron (NM_020458, intron 14 of 19)	intron (NM_020458, intron 14 of 19)	-85520	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
3.21482-9	chr2	200320111	200320610	+	0	NA	intron (NR_134967, intron 2 of 4)	intron (NR_134967, intron 2 of 4)	2459	NM_001172509	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
55.9176	chr6	52217223	52217722	+	0	NA	Intergenic	Intergenic	-9454	NM_133367	85315	Hs.239388	NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
0.736576-36	chr20	55925974	55926473	+	0	NA	promoter-TSS (NM_003610)	promoter-TSS (NM_003610)	78	NM_003610	8480	Hs.371698	NM_003610	ENSG00000101146	RAE1	MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
2.27678-7	chr9	21991548	21992047	+	0	NA	intron (NM_058195, intron 1 of 2)	intron (NM_058195, intron 1 of 2)	2693	NM_058195	1029	Hs.512599	NM_000077	ENSG00000147889	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
0.371573-5	chr15	99091311	99091810	+	0	NA	Intergenic	CpG	-33949	NM_182562	283777	Hs.668070	NM_182562	ENSG00000185087	FAM169B	-	family with sequence similarity 169 member B	protein-coding
0.920515-14	chr19	18029818	18030317	+	0	NA	Intergenic	SVA_D|Other|Other	-13757	NM_001136203	115098	Hs.100043	NM_138442	ENSG00000007080	CCDC124	-	coiled-coil domain containing 124	protein-coding
2.00659-8	chr20	62580491	62580990	+	0	NA	intron (NM_017859, intron 1 of 14)	intron (NM_017859, intron 1 of 14)	1787	NM_001193379	54963	Hs.504998	NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
0.888424-44	chr4	94237717	94238216	+	0	NA	intron (NM_001286838, intron 7 of 14)	intron (NM_001286838, intron 7 of 14)	-512112	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
1.4752-12	chr14	105379693	105380192	+	0	NA	Intergenic	L1MEd|LINE|L1	-11211	NM_001308174	122618	Hs.407101	NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
23.1605	chr14	95120403	95120902	+	0	NA	Intergenic	MIRb|SINE|MIR	13590	NR_015340	388007	Hs.527795	NR_015340	ENSG00000187483	SERPINA13P	SERPINA13|UNQ6121	serpin family A member 13, pseudogene	pseudo
0.545314-16	chr17	17506744	17507243	+	0	NA	Intergenic	Intergenic	-11976	NM_001267552	10400	Hs.714193	NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
0.33389-14	chr4	8157757	8158256	+	0	NA	intron (NM_001130083, intron 1 of 20)	intron (NM_001130083, intron 1 of 20)	2553	NM_001130085	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
2.71646-16	chrX	135829665	135830164	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	19637	NM_001306177	9459	Hs.522795	NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
5.62249-17	chr10	133775907	133776406	+	0	NA	Intergenic	Intergenic	19361	NM_004052	664	Hs.144873	NM_004052	ENSG00000176171	BNIP3	NIP3	BCL2 interacting protein 3	protein-coding
4.52225-4	chr8	22436252	22436751	+	0	NA	exon (NM_021630, exon 1 of 10)	exon (NM_021630, exon 1 of 10)	247	NM_021630	64236	Hs.632034	NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
0.245682-40	chr14	60386501	60387000	+	0	NA	intron (NR_075071, intron 1 of 32)	CpG	319	NR_075071	341883	Hs.666245	NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	pseudo
14.9485-13	chr4	37797363	37797862	+	0	NA	Intergenic	LTR56|LTR|ERV1	-30670	NM_018290	55276	Hs.23363	NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
1.6813-6	chr8	104383452	104383951	+	0	NA	promoter-TSS (NM_138455)	promoter-TSS (NM_138455)	-42	NM_138455	115908	Hs.405614	NM_138455	ENSG00000164932	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
2.20404-3	chr11	27222928	27223427	+	0	NA	intron (NR_125766, intron 2 of 4)	intron (NR_125766, intron 2 of 4)	17138	NR_125768	103695435	Hs.196133	NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
12.1681	chr1	68178799	68179517	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	28298	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
14.6725	chr4	176303305	176303804	+	0	NA	Intergenic	L1MDa|LINE|L1	405273	NM_001261448	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
0.594835-20	chr6	154831526	154832025	+	0	NA	promoter-TSS (NM_173515)	promoter-TSS (NM_173515)	-22	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding
5.10042-9	chr8	139829002	139829501	+	0	NA	intron (NM_152888, intron 7 of 64)	MIRb|SINE|MIR	96998	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
6.77781-10	chr11	10413356	10413855	+	0	NA	intron (NR_103765, intron 2 of 3)	LTR5_Hs|LTR|ERVK	-58263	NM_001172431	272	Hs.501890	NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
2.36572-14	chr20	18720446	18720945	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	-41343	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA
0.899095-4	chr22	27240880	27241379	+	0	NA	Intergenic	Intergenic	-58126	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000235271	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
6.65546-3	chr19	47357242	47357741	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-3239	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 sigma 1 subunit	protein-coding
1.71985-4	chr7	20687715	20688214	+	0	NA	intron (NM_178559, intron 2 of 18)	MamRep1161|DNA|TcMar	998	NM_001163942	340273	Hs.404102	NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP binding cassette subfamily B member 5	protein-coding
4.4855-4	chr7	121902252	121902751	+	0	NA	Intergenic	Intergenic	-41211	NR_036484	154860	Hs.664204	NR_036484	ENSG00000230316	FEZF1-AS1	-	FEZF1 antisense RNA 1	ncRNA
0.665127-4	chr13	53174199	53174698	+	0	NA	Intergenic	CpG	-17157	NM_001011725	144983	Hs.447506	NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1-like 2	protein-coding
19.3554-4	chr18	31385429	31385928	+	0	NA	Intergenic	Intergenic	227137	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
2.55707-12	chr16	82504350	82504849	+	0	NA	Intergenic	Intergenic	-155800	NM_001220489	1012	Hs.654386	NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
0.070049-40	chr18	44710964	44711463	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-8468	NM_016097	51124	Hs.130917	NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
2.48721-7	chr3	132855115	132855614	+	0	NA	intron (NM_001282865, intron 1 of 3)	intron (NM_001282865, intron 1 of 3)	11699	NM_001282865	66000	Hs.191616	NM_023943	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
0.395292-6	chr5	32218088	32218587	+	0	NA	Intergenic	Intergenic	-43912	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
4.49772-12	chr15	96945556	96946055	+	0	NA	Intergenic	Intergenic	69236	NM_001145157	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
3.66532-6	chr9	5442353	5442852	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-4665	NM_018465	55848	Hs.584242	NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
40.9637	chr4	169991070	169991569	+	0	NA	Intergenic	Intergenic	-59851	NM_032783	84869	Hs.659311	NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
13.6351	chr17	72956718	72957217	+	0	NA	intron (NM_030630, intron 6 of 18)	intron (NM_030630, intron 6 of 18)	-9817	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
0.390538-2	chr13	73991116	73991615	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	-147016	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
9.62574-30	chr3	44911815	44912314	+	0	NA	Intergenic	Intergenic	-4034	NM_003241	7047	Hs.438265	NM_003241	ENSG00000163810	TGM4	TGP|hTGP	transglutaminase 4	protein-coding
13.7263-2	chr2	225450227	225450726	+	0	NA	promoter-TSS (NM_001257197)	promoter-TSS (NM_001257197)	-362	NM_003590	8452	Hs.372286	NM_003590	ENSG00000036257	CUL3	CUL-3|PHA2E	cullin 3	protein-coding
0.560111-18	chr5	1125032	1125531	+	0	NA	Intergenic	Intergenic	-13109	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
12.5414-4	chr2	12216807	12217306	+	0	NA	intron (NR_110196, intron 2 of 5)	MLT1I|LTR|ERVL-MaLR	69814	NR_110198	100506457	Hs.197824	NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
4.65974-13	chr1	23520795	23521294	+	0	NA	5' UTR (NM_000864, exon 1 of 1)	5' UTR (NM_000864, exon 1 of 1)	178	NM_000864	3352	Hs.121482	NM_000864	ENSG00000179546	HTR1D	5-HT1D|HT1DA|HTR1DA|HTRL|RDC4	5-hydroxytryptamine receptor 1D	protein-coding
13.9147-2	chr11	82420202	82420701	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	24455	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
11.0513	chr4	89514031	89514530	+	0	NA	intron (NM_001318505, intron 1 of 8)	CpG	706	NM_001271602	8916	Hs.35804	NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
0.530567-13	chr16	3550665	3551164	+	0	NA	promoter-TSS (NM_015041)	promoter-TSS (NM_015041)	-17	NM_001330454	23059	Hs.155995	NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
18.0688-4	chr13	24024407	24024906	+	0	NA	Intergenic	Intergenic	-16789	NM_014363	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
3.63512-21	chr14	42691965	42692795	+	0	NA	Intergenic	Intergenic	616321	NR_144388	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
7.16699-9	chr14	52396581	52397080	+	0	NA	intron (NM_001243773, intron 2 of 3)	intron (NM_001243773, intron 2 of 3)	-11541	NR_126331	102723604	Hs.667541	NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
3.56547-3	chr9	99181262	99181761	+	0	NA	promoter-TSS (NM_153695)	promoter-TSS (NM_153695)	-842	NM_153695	195828	Hs.494557	NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
3.67543-5	chr6	31774396	31774895	+	0	NA	5' UTR (NM_021177, exon 1 of 5).5	5' UTR (NM_021177, exon 1 of 5).5	116	NM_021177	57819	Hs.103106	NM_021177	ENSG00000204392	LSM2	C6orf28|G7B|YBL026W|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
0.798767-14	chr3	15671579	15672078	+	0	NA	intron (NM_001281724, intron 2 of 5)	intron (NM_001281724, intron 2 of 5)	28352	NM_001281725	686	Hs.444197	NM_000060	ENSG00000169814	BTD	-	biotinidase	protein-coding
0.231917-25	chr22	41697340	41697839	+	0	NA	promoter-TSS (NM_017590)	promoter-TSS (NM_017590)	82	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
0.190881-20	chr19	13095921	13096420	+	0	NA	Intergenic	Intergenic	-10414	NM_002501	4784	Hs.257970	NM_002501	ENSG00000008441	NFIX	CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
14.6344-2	chr8	10191866	10192658	+	0	NA	intron (NM_001199729, intron 6 of 6)	CpG	-139813	NR_120604	101929191	Hs.595262	NR_120604	ENSG00000253641	LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
3.49692-22	chr18	60377556	60378055	+	0	NA	Intergenic	MER135|DNA|DNA	-4867	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
2.54145-12	chr17	55334764	55335263	+	0	NA	intron (NM_170721, intron 2 of 9)	intron (NM_170721, intron 2 of 9)	639	NM_170721	124540	Hs.658922	NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
8.76148-14	chr4	4764992	4765491	+	0	NA	intron (NR_125892, intron 1 of 2)	intron (NR_125892, intron 1 of 2)	1754	NR_125892	101928279	Hs.586152	NR_125892		LOC101928279	-	uncharacterized LOC101928279	ncRNA
1.35489-25	chr21	45186758	45187257	+	0	NA	Intergenic	Intergenic	9249	NM_000100	1476	Hs.695	NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
1.77178-15	chr11	134145817	134146316	+	0	NA	promoter-TSS (NM_001080407)	promoter-TSS (NM_001080407)	-209	NM_001080407	112937	Hs.721382	NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
3.13364-3	chr6	42981558	42982057	+	0	NA	promoter-TSS (NM_057161)	promoter-TSS (NM_057161)	-34	NR_040101	116138	Hs.412468	NM_057161	ENSG00000124702	KLHDC3	PEAS|dJ20C7.3	kelch domain containing 3	protein-coding
3.15155-15	chr16	89410448	89410947	+	0	NA	intron (NR_045839, intron 2 of 9)	MIRc|SINE|MIR	23156	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
9.50782-10	chr16	52028353	52028852	+	0	NA	Intergenic	Intergenic	79245	NM_001242473	388276	Hs.534669	NM_001242473		C16orf97	-	chromosome 16 open reading frame 97	protein-coding
15.1999-4	chr6	123439795	123440294	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	122928	NM_001010852	134829	Hs.486361	NM_001010852	ENSG00000146352	CLVS2	C6orf212|C6orf213|RLBP1L2|bA160A10.4	clavesin 2	protein-coding
0.213631-7	chr3	42003614	42004113	+	0	NA	promoter-TSS (NM_017886)	promoter-TSS (NM_017886)	69	NM_001322501	54986	Hs.656192	NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
27.0997	chr14	89852390	89852889	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	30815	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
1.83096-12	chr5	24747518	24748017	+	0	NA	Intergenic	LTR14B|LTR|ERVK	92925	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	ncRNA
2.83997-5	chr9	21990998	21991497	+	0	NA	intron (NM_058195, intron 1 of 2)	MER30|DNA|hAT-Charlie	3243	NM_058195	1029	Hs.512599	NM_000077	ENSG00000147889	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
18.6967-2	chr10	50747450	50747949	+	0	NA	promoter-TSS (NM_000124)	promoter-TSS (NM_000124)	-115	NM_001277059	2074	Hs.49063	NM_000124	ENSG00000225830	ERCC6	ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1	ERCC excision repair 6, chromatin remodeling factor	protein-coding
2.15383-2	chr12	65218840	65219339	+	0	NA	intron (NM_015279, intron 1 of 11)	CpG	737	NM_001330186	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
4.93495-3	chr16	16213812	16214311	+	0	NA	intron (NM_004996, intron 23 of 30)	intron (NM_004996, intron 23 of 30)	103267	NM_001171	368	Hs.442182	NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
7.54487-9	chr9	110455921	110456420	+	0	NA	Intergenic	Intergenic	-204169	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
1.27844-4	chr7	26628074	26628573	+	0	NA	Intergenic	Intergenic	-49167	NM_001145531	285941	Hs.413394	NM_001145531		C7orf71	-	chromosome 7 open reading frame 71	protein-coding
11.4448-2	chr4	184420435	184420934	+	0	NA	intron (NR_033995, intron 1 of 2)	intron (NR_033995, intron 1 of 2)	4984	NR_033995	389247	Hs.385787	NR_033995		LOC389247	-	uncharacterized LOC389247	ncRNA
2.66803-6	chr5	142388596	142389095	+	0	NA	intron (NM_015071, intron 11 of 22)	intron (NM_015071, intron 11 of 22)	-140370	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
25.6067	chr7	148198704	148199203	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-88704	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
3.59519	chr14	63775353	63775852	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	9991	NM_145171	122876	Hs.375028	NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone beta 5	protein-coding
0.296531-79	chr15	69110348	69110847	+	0	NA	intron (NM_006305, intron 1 of 6)	CpG	2664	NM_006305	8125	Hs.458747	NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
0.0261362-37	chr2	73459737	73460236	+	0	NA	intron (NR_144358, intron 1 of 4)	intron (NR_144358, intron 1 of 4)	426	NM_032319	84279	Hs.61268	NM_032319	ENSG00000135617	PRADC1	C2orf7|PAP21	protease associated domain containing 1	protein-coding
0.0130484-25	chr5	112073842	112074341	+	0	NA	5' UTR (NM_001127510, exon 2 of 17)	5' UTR (NM_001127510, exon 2 of 17)	535	NM_001127510	324	Hs.158932	NM_000038	ENSG00000134982	APC	BTPS2|DP2|DP2.5|DP3|GS|PPP1R46	APC, WNT signaling pathway regulator	protein-coding
2.66803-4	chr14	103995364	103995863	+	0	NA	intron (NM_152307, intron 1 of 3)	CpG	104	NM_152307	115708	Hs.525610	NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
0.649968-11	chr2	148436932	148437431	+	0	NA	Intergenic	MIR|SINE|MIR	-164905	NM_001278580	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
0.070049-34	chr11	64764292	64764791	+	0	NA	promoter-TSS (NM_138456)	promoter-TSS (NM_138456)	-24	NM_138456	116071	Hs.124840	NM_138456	ENSG00000168062	BATF2	SARI	basic leucine zipper ATF-like transcription factor 2	protein-coding
3.5164	chr6	19632850	19633349	+	0	NA	Intergenic	Intergenic	171891	NR_134651	100506885	Hs.346489	NR_134649	ENSG00000228412	LOC100506885	-	uncharacterized LOC100506885	ncRNA
0.433514-7	chr8	96902696	96903195	+	0	NA	Intergenic	Intergenic	57631	NR_036611	100500773	Hs.741582	NR_036611		LOC100500773	-	serine and arginine rich splicing factor 3 pseudogene	pseudo
0.496351-27	chrX	154612275	154612774	+	0	NA	TTS (NR_036260)	TTS (NR_036260)	323	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	ncRNA
0.385789-46	chr3	150804699	150805198	+	0	NA	intron (NM_053002, intron 1 of 42)	CpG-19059	363	NM_053002	116931	Hs.744234	NM_053002	ENSG00000144893	MED12L	NOPAR|TNRC11L|TRALP|TRALPUSH	mediator complex subunit 12 like	protein-coding
1.59894-25	chr17	66057523	66058022	+	0	NA	Intergenic	Intergenic	25696	NM_001320611	3838	Hs.594238	NM_002266	ENSG00000182481	KPNA2	IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
1.06238-7	chr6	53476137	53476636	+	0	NA	Intergenic	Intergenic	-16792	NR_125841	101927171	Hs.334005	NR_125841	ENSG00000235899	LINC01564	TCONS_00011314|XLOC_005327	long intergenic non-protein coding RNA 1564	ncRNA
8.47712-12	chr6	80340691	80341190	+	0	NA	5' UTR (NM_031469, exon 1 of 4)	5' UTR (NM_031469, exon 1 of 4)	118	NM_031469	83699	Hs.302772	NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
19.0658-4	chr11	112263870	112264369	+	0	NA	Intergenic	Intergenic	-88836	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
8.96196-5	chr12	125053078	125053577	+	0	NA	Intergenic	Intergenic	-1317	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
8.23909-6	chr11	120785269	120785768	+	0	NA	intron (NM_001282470, intron 12 of 19)	L2c|LINE|L2	-20012	NR_132790	101929227	Hs.627156	NR_132790	ENSG00000250493	LOC101929227	-	uncharacterized LOC101929227	ncRNA
5.59091-13	chr5	159739451	159739950	+	0	NA	promoter-TSS (NM_024565)	promoter-TSS (NM_024565)	-93	NM_001308173	79616	Hs.14070	NM_024565	ENSG00000135083	CCNJL	-	cyclin J like	protein-coding
2.26945-13	chr8	31496518	31497017	+	0	NA	promoter-TSS (NM_013962)	promoter-TSS (NM_013962)	-501	NM_013962	3084	Hs.453951	NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
4.68521-5	chr3	103852430	103852929	+	0	NA	Intergenic	LTR9|LTR|ERV1	93426	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
0.491485-13	chr12	125218908	125219407	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	129362	NM_005505	949	Hs.731377	NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
0.675262-32	chr1	179560619	179561118	+	0	NA	promoter-TSS (NM_001199089)	promoter-TSS (NM_001199089)	111	NM_001199085	163589	Hs.197354	NM_173533	ENSG00000162782	TDRD5	TUDOR3	tudor domain containing 5	protein-coding
0.639892-5	chrX	140271181	140271680	+	0	NA	promoter-TSS (NM_012317)	promoter-TSS (NM_012317)	-31	NM_012317	23641	Hs.45231	NM_012317	ENSG00000182195	LDOC1	BCUR1|Mar7|Mart7	leucine zipper down-regulated in cancer 1	protein-coding
11.9382-2	chr1	10089310	10089809	+	0	NA	Intergenic	SVA_D|Other|Other	-3482	NM_006048	10277	Hs.593974	NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
5.867-12	chr16	67232817	67233772	+	0	NA	TTS (NM_001950)	TTS (NM_001950)	266	NM_024712	79767	Hs.377416	NM_024712	ENSG00000102890	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
0.952845	chr16	86840296	86840795	+	0	NA	Intergenic	Intergenic	84848	NR_135182	102724344	Hs.585769	NR_135182	ENSG00000261175	LOC102724344	-	uncharacterized LOC102724344	ncRNA
10.3012-2	chr20	30249293	30249792	+	0	NA	Intergenic	Intergenic	23851	NM_032609	84701	Hs.277101	NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
1.53663-14	chr1	181064839	181065338	+	0	NA	Intergenic	Intergenic	7450	NM_016545	51278	Hs.15725	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
36.0033	chr7	31347490	31347989	+	0	NA	Intergenic	Intergenic	32799	NM_022728	63974	Hs.45152	NM_022728	ENSG00000164600	NEUROD6	Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2	neuronal differentiation 6	protein-coding
3.00162-3	chr2	233740777	233741567	+	0	NA	non-coding (NR_144371, exon 3 of 3)	non-coding (NR_144371, exon 3 of 3)	682	NR_144372	389084	Hs.657509	NM_206895	ENSG00000182600	C2orf82	ASCL830|UNQ830	chromosome 2 open reading frame 82	protein-coding
0.649968-9	chr13	21100346	21100845	+	0	NA	promoter-TSS (NM_015974)	promoter-TSS (NM_015974)	-583	NM_015974	51084	Hs.370703	NM_015974	ENSG00000165475	CRYL1	GDH|HEL30|lambda-CRY	crystallin lambda 1	protein-coding
0.695604-9	chr6	35527467	35527966	+	0	NA	Intergenic	LTR13|LTR|ERVK	-47001	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
1.43271-14	chr7	100119782	100120281	+	0	NA	Intergenic	SVA_D|Other|Other	-16803	NM_006076	3268	Hs.521083	NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
1.63043-13	chr2	169128669	169129168	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-24813	NM_013233	27347	Hs.276271	NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
4.17937-6	chr7	22434268	22434767	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-37984	NM_012294	9771	Hs.174768	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
0.296531-133	chr9_gl000199_random	168786	169285	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.34328-16	chr3	195913606	195914105	+	0	NA	Intergenic	Intergenic	24445	NM_001039617	131540	Hs.111591	NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type containing 19	protein-coding
2.41088-7	chr20	34359788	34360287	+	0	NA	intron (NM_016436, intron 1 of 17)	CpG	114	NM_016436	51230	Hs.517044	NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
11.8709	chr4	111775302	111775801	+	0	NA	Intergenic	Intergenic	-212272	NM_153427	5308	Hs.643588	NM_000325	ENSG00000164093	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
13.9254-2	chr2	73815162	73815661	+	0	NA	intron (NM_015120, intron 16 of 22)	intron (NM_015120, intron 16 of 22)	54126	NM_003960	9027	Hs.14637	NM_003960	ENSG00000144035	NAT8	ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510	N-acetyltransferase 8 (putative)	protein-coding
0.222764-13	chr11	55825181	55825680	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	27535	NM_001001921	219447	Hs.553625	NM_001001921	ENSG00000181785	OR5AS1	OR11-168	olfactory receptor family 5 subfamily AS member 1	protein-coding
0.649968-12	chrX	102469788	102470287	+	0	NA	promoter-TSS (NM_001080425)	promoter-TSS (NM_001080425)	17	NM_001127688	56271	Hs.184736	NM_001080425	ENSG00000102409	BEX4	BEXL1	brain expressed X-linked 4	protein-coding
7.64472-5	chr5	143447417	143447916	+	0	NA	Intergenic	Intergenic	102612	NM_001271732	81555	Hs.372050	NM_030799	ENSG00000145817	YIPF5	FinGER5|SB140|SMAP-5|SMAP5|YIP1A	Yip1 domain family member 5	protein-coding
1.87755-5	chr10	111682715	111683214	+	0	NA	promoter-TSS (NM_001324136)	promoter-TSS (NM_001324136)	40	NM_001324136	7511	Hs.390623	NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
1.27261-9	chr1	178063277	178063776	+	0	NA	promoter-TSS (NR_027982)	promoter-TSS (NR_027982)	-398	NR_027982	100302401	Hs.736117	NR_027982	ENSG00000224687	RASAL2-AS1	-	RASAL2 antisense RNA 1	ncRNA
7.93174-2	chr5	3557440	3557939	+	0	NA	Intergenic	Intergenic	-21481	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LINC01019	-	long intergenic non-protein coding RNA 1019	ncRNA
0.510982-20	chr12	94286612	94287111	+	0	NA	intron (NR_135147, intron 3 of 3)	intron (NR_135147, intron 3 of 3)	50521	NR_135017	105369911	Hs.577495	NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
15.0864-2	chr1	30457024	30457523	+	0	NA	Intergenic	Intergenic	53186	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
0.94744-11	chr3	72305219	72305718	+	0	NA	Intergenic	Intergenic	105060	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
1.88425-26	chr7	90909423	90909922	+	0	NA	Intergenic	Intergenic	15889	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
34.1908	chr5	8614384	8614883	+	0	NA	Intergenic	Intergenic	153595	NR_039663	100616142		NR_039663	ENSG00000247516	MIR4458	mir-4458	microRNA 4458	ncRNA
3.69572-3	chrX	155136885	155137384	+	0	NA	intron (NM_001185183, intron 5 of 6)	SVA_D|Other|Other	26191	NR_033715	6845	Hs.24167	NM_005638	ENSG00000124333	VAMP7	SYBL1|TI-VAMP|TIVAMP|VAMP-7	vesicle associated membrane protein 7	protein-coding
7.25842-2	chr7	152371861	152372360	+	0	NA	intron (NM_005431, intron 1 of 2)	MER58A|DNA|hAT-Charlie	1140	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	FANCU	X-ray repair cross complementing 2	protein-coding
5.11449-3	chr14	49067909	49068408	+	0	NA	Intergenic	SVA_B|Other|Other	-803941	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
17.0553-3	chr5	145895492	145895991	+	0	NA	promoter-TSS (NM_194251)	promoter-TSS (NM_194251)	-65	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
9.66576-5	chr19	4296440	4296939	+	0	NA	intron (NM_001308232, intron 1 of 3)	intron (NM_001308232, intron 1 of 3)	5739	NM_144615	126259	Hs.263928	NM_144615	ENSG00000167664	TMIGD2	CD28H|IGPR-1|IGPR1	transmembrane and immunoglobulin domain containing 2	protein-coding
8.29738-7	chr11	5955982	5956481	+	0	NA	Intergenic	SVA_F|Other|Other	-12346	NM_001003443	390083	Hs.553741	NM_001003443	ENSG00000184478	OR56A3	OR56A2P|OR56A3P|OR56A6	olfactory receptor family 56 subfamily A member 3	protein-coding
13.3724-2	chr5	149998157	149998656	+	0	NA	intron (NM_001166209, intron 2 of 2)	intron (NM_001166209, intron 2 of 2)	1200	NM_001166209	11346	Hs.435228	NM_007286	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
4.73661-4	chr16	4421546	4422045	+	0	NA	promoter-TSS (NM_138440)	promoter-TSS (NM_138440)	-54	NM_138440	114990	Hs.372579	NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
1.59894-13	chr3	166403068	166403567	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-213154	NR_135545	105374194		NR_135545		LOC105374194	inv3q26.1	uncharacterized LOC105374194	ncRNA
0.268721-45	chr20	32320347	32320846	+	0	NA	intron (NR_104259, intron 1 of 13)	intron (NR_104259, intron 1 of 13)	1030	NM_032819	84905	Hs.516989	NM_032819	ENSG00000131061	ZNF341	-	zinc finger protein 341	protein-coding
0.118872-16	chr14	100811976	100812475	+	0	NA	intron (NM_173701, intron 7 of 10)	intron (NM_173701, intron 7 of 10)	22546	NM_207117	283600	Hs.108268	NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
0.0130484-23	chrX	133683569	133684068	+	0	NA	promoter-TSS (NR_038998)	promoter-TSS (NR_038998)	-236	NR_038998	100506757	Hs.130961	NR_038998		LINC00629	LINC00629A|LINC00629B|LINC00629C|LINC00629D	long intergenic non-protein coding RNA 629	ncRNA
10.57-3	chr14	75454719	75455218	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-14644	NM_014239	8892	Hs.409137	NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B subunit beta	protein-coding
0.48177-28	chr9	127052230	127052971	+	0	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	-1650	NM_001166170	10783	Hs.197071	NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
10.2228-8	chr16	84122175	84122674	+	0	NA	intron (NM_003791, intron 8 of 22)	intron (NM_003791, intron 8 of 22)	28124	NM_003791	8720	Hs.75890	NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
0.599818-28	chr11	66257047	66257546	+	0	NA	intron (NM_005700, intron 6 of 17)	MLT1G3|LTR|ERVL-MaLR	-9576	NR_120586	101928069	Hs.523816	NR_120586	ENSG00000255517	LOC101928069	-	uncharacterized LOC101928069	ncRNA
0.985417-5	chr14	25275336	25275835	+	0	NA	Intergenic	MIRb|SINE|MIR	-172110	NM_004131	3002	Hs.1051	NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
0.809219-19	chr10	102124535	102125034	+	0	NA	TTS (NM_005063)	TTS (NM_005063)	-8549	NR_026762	90271	Hs.628088	NR_026762		OLMALINC	C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS	oligodendrocyte maturation-associated long intergenic non-coding RNA	ncRNA
0.555173-10	chr5	50259301	50259800	+	0	NA	Intergenic	Intergenic	6471	NR_104653	100287592	Hs.519298	NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
16.3639-2	chr14	59298605	59299104	+	0	NA	intron (NR_110547, intron 1 of 5)	intron (NR_110547, intron 1 of 5)	3848	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
6.09065-6	chr1	144859629	144860128	+	0	NA	exon (NM_001198832, exon 40 of 46)	exon (NM_001198832, exon 40 of 46)	72487	NM_001002811	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
0.510982-27	chr5	22650558	22651057	+	0	NA	intron (NM_004061, intron 1 of 14)	intron (NM_004061, intron 1 of 14)	202924	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
16.925	chr18	13440839	13441338	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	-13555	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
6.16185-10	chr8	104117527	104118026	+	0	NA	Intergenic	Intergenic	-35145	NM_024812	79870	Hs.533446	NM_024812	ENSG00000164929	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding
2.18963-7	chr22	28949870	28950369	+	0	NA	intron (NM_001145418, intron 2 of 22)	SVA_D|Other|Other	94262	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
2.47184-7	chr1	210413054	210413553	+	0	NA	intron (NM_019605, intron 3 of 3)	intron (NM_019605, intron 3 of 3)	-5837	NR_024337	574036	Hs.446946	NR_024337	ENSG00000203706	SERTAD4-AS1	C1orf133	SERTAD4 antisense RNA 1	ncRNA
0.788339-15	chr12	72665825	72666324	+	0	NA	promoter-TSS (NM_013381)	promoter-TSS (NM_013381)	-455	NM_013381	29953	Hs.199814	NM_013381	ENSG00000072657	TRHDE	PAP-II|PGPEP2|TRH-DE	thyrotropin releasing hormone degrading enzyme	protein-coding
1.31944-14	chr1	32698477	32698976	+	0	NA	intron (NR_026850, intron 5 of 6)	AluSx|SINE|Alu	8585	NR_026850	339483	Hs.471067	NR_026850		MTMR9LP	MTMR9L	myotubularin related protein 9-like, pseudogene	pseudo
0.452752-7	chr21	46101964	46102463	+	0	NA	promoter-TSS (NM_181686)	promoter-TSS (NM_181686)	-135	NM_181686	353332	Hs.688628	NM_181686	ENSG00000187175	KRTAP12-1	KAP12.1|KRTAP12.1	keratin associated protein 12-1	protein-coding
7.56962-19	chr8	11204790	11205289	+	0	NA	intron (NR_001578, intron 1 of 8)	CpG	7893	NR_001578	157739	Hs.583896	NR_001578	ENSG00000154316	TDH	SDR14E1P	L-threonine dehydrogenase (pseudogene)	pseudo
2.96709	chr17	16556767	16557266	+	0	NA	intron (NM_020787, intron 1 of 5)	CpG	151	NM_020787	57547	Hs.128078	NM_020787	ENSG00000197566	ZNF624	-	zinc finger protein 624	protein-coding
0.32452-23	chr5	49963014	49963513	+	0	NA	promoter-TSS (NM_001331028)	promoter-TSS (NM_001331028)	-117	NM_001331028	79668	Hs.369581	NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
6.81937-9	chr17_gl000205_random	87996	88495	+	0	NA	Intergenic	Intergenic	-28378	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
0.0261362-24	chr6	3444522	3445021	+	0	NA	intron (NM_021945, intron 1 of 10)	intron (NM_021945, intron 1 of 10)	476	NM_021945	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
5.78396-11	chr14	77924626	77925125	+	0	NA	promoter-TSS (NM_001193314)	promoter-TSS (NM_001193314)	502	NM_012111	10598	Hs.204041	NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|hAha1|p38	activator of HSP90 ATPase activity 1	protein-coding
0.136762-14	chr5	128241133	128241632	+	0	NA	Intergenic	Intergenic	-59438	NM_001317984	28965	Hs.49765	NM_014031	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	solute carrier family 27 member 6	protein-coding
4.02305-7	chr21	15653727	15654226	+	0	NA	intron (NR_003087, intron 2 of 5)	LTR5_Hs|LTR|ERVK	7856	NR_003087	150000	Hs.366575	NM_138726	ENSG00000243064	ABCC13	ABCC13P|C21orf73|PRED6	ATP binding cassette subfamily C member 13 (pseudogene)	pseudo
1.54902-14	chr7	2429478	2429977	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13468	NM_001243795	55501	Hs.744987	NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
0.985417-18	chr7	150129952	150130451	+	0	NA	promoter-TSS (NR_034033)	promoter-TSS (NR_034033)	-541	NR_034033	285972	Hs.647110	NR_034033	ENSG00000242258	LINC00996	-	long intergenic non-protein coding RNA 996	ncRNA
31.2901-3	chr14	37325489	37325988	+	0	NA	intron (NM_030631, intron 2 of 9)	intron (NM_030631, intron 2 of 9)	95858	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
7.01147-11	chr2	173701077	173701576	+	0	NA	intron (NM_001100397, intron 1 of 27)	intron (NM_001100397, intron 1 of 27)	15011	NM_001100397	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
9.0309-13	chr17	35838199	35838698	+	0	NA	Intergenic	Intergenic	-11503	NM_007026	11072	Hs.91448	NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
13.8828-2	chr20	557710	558209	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	32951	NM_004609	6939	Hs.437	NM_004609	ENSG00000125878	TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15 (basic helix-loop-helix)	protein-coding
0.0305075-37	chr17	35969304	35969803	+	0	NA	promoter-TSS (NM_001163547)	promoter-TSS (NM_001163547)	-67	NM_007247	11276	Hs.594647	NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
20.2045-8	chr21	29697811	29698310	+	0	NA	Intergenic	L1MDa|LINE|L1	-97074	NR_126012	101927973	Hs.570414	NR_126012	ENSG00000236532	LINC01695	-	long intergenic non-protein coding RNA 1695	ncRNA
0.400052-44	chr12	49625928	49626427	+	0	NA	intron (NM_001303114, intron 1 of 3)	intron (NM_001303114, intron 1 of 3)	4468	NM_001303116	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
1.20904-17	chr10	135075140	135075639	+	0	NA	TTS (NM_001164489)	TTS (NM_001164489)	-14000	NR_108079	101927671	Hs.741766	NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
6.8403-8	chr18	25510524	25511023	+	0	NA	Intergenic	Intergenic	105776	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
5.157-6	chr6	74634937	74635436	+	0	NA	Intergenic	SVA_B|Other|Other	-143981	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
10.9151-2	chr12	12929152	12929651	+	0	NA	intron (NM_001130415, intron 1 of 1)	intron (NM_001130415, intron 1 of 1)	-9140	NM_030817	81575	Hs.23388	NM_030817	ENSG00000178878	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
8.66461-7	chr8	79812419	79812918	+	0	NA	Intergenic	Intergenic	-94910	NM_001199886	3574	Hs.591873	NM_000880	ENSG00000104432	IL7	IL-7	interleukin 7	protein-coding
0.809219	chr9	134268279	134268778	+	0	NA	Intergenic	MIRb|SINE|MIR	-36949	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
6.77781-11	chr5	156315779	156316278	+	0	NA	Intergenic	L1PA11|LINE|L1	38479	NR_038443	153743	Hs.567727	NM_206858	ENSG00000231989	PPP1R2P3	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 3	pseudo
2.55707-13	chr13	113807933	113808432	+	0	NA	Intergenic	Intergenic	-4786	NM_003891	8858	Hs.1011	NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
6.73664-9	chr1	87797111	87797610	+	0	NA	intron (NM_006769, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	3209	NM_006769	8543	Hs.436792	NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
0.268721-35	chr2	223573922	223574421	+	0	NA	intron (NM_058165, intron 5 of 5)	intron (NM_058165, intron 5 of 5)	37714	NM_058165	116255	Hs.344090	NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
0.428718-32	chr1	230880759	230881258	+	0	NA	Intergenic	Intergenic	-2122	NM_016452	10753	Hs.498021	NM_006615	ENSG00000135773	CAPN9	GC36|nCL-4	calpain 9	protein-coding
0.163737-29	chrX	154299529	154300028	+	0	NA	promoter-TSS (NM_001018024)	promoter-TSS (NM_001018024)	83	NM_001018055	79184	Hs.558537	NM_024332	ENSG00000185515	BRCC3	BRCC36|C6.1A|CXorf53	BRCA1/BRCA2-containing complex subunit 3	protein-coding
0.00869459-8	chr9	136344060	136344559	+	0	NA	promoter-TSS (NM_001145099)	promoter-TSS (NM_001145099)	-33	NM_017585	11182	Hs.244378	NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
17.986-2	chr6	138038476	138038975	+	0	NA	Intergenic	Intergenic	21449	NR_121618	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
5.36107-6	chr13	38938187	38938686	+	0	NA	Intergenic	SVA_B|Other|Other	14528	NM_016617	51569	Hs.643655	NM_016617	ENSG00000120686	UFM1	BM-002|C13orf20	ubiquitin fold modifier 1	protein-coding
1.44481-17	chr16	29623783	29624282	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	1006	NR_135317	440354	Hs.552700	NR_002473		SMG1P2	-	SMG1P2, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 2	pseudo
0.123337-2	chr16	188415	188914	+	0	NA	promoter-TSS (NM_001243248)	promoter-TSS (NM_001243248)	33	NM_001243248	8131	Hs.19699	NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
0.649968-21	chr8	80524797	80525787	+	0	NA	intron (NM_007029, intron 1 of 4)	CpG	2243	NM_001199214	11075	Hs.521651	NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
12.7901-2	chr2	9949075	9949574	+	0	NA	Intergenic	Intergenic	-34247	NM_001318977	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
0.467237-3	chr20	1757480	1757979	+	0	NA	intron (NR_037142, intron 2 of 3)	intron (NR_037142, intron 2 of 3)	2663	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
3.36299-4	chr10	50887386	50887885	+	0	NA	promoter-TSS (NM_001042427)	promoter-TSS (NM_001042427)	-49	NM_182554	282966	Hs.131287	NM_182554	ENSG00000178645	C10orf53	-	chromosome 10 open reading frame 53	protein-coding
0.195421-4	chr11	60762046	60762545	+	0	NA	intron (NM_001254751, intron 1 of 10)	intron (NM_001254751, intron 1 of 10)	23182	NR_045638	923	Hs.744366	NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
19.5861-2	chr14	32799833	32800332	+	0	NA	intron (NM_004274, intron 1 of 13)	intron (NM_004274, intron 1 of 13)	1603	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
12.5026	chr11	35571261	35571760	+	0	NA	Intergenic	Intergenic	-19662	NM_001282675	25891	Hs.55044	NM_015430	ENSG00000149090	PAMR1	DKFZP586H2123|FP938|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
1.4813-8	chr1	75698922	75699421	+	0	NA	intron (NM_001320285, intron 14 of 25)	intron (NM_001320285, intron 14 of 25)	98604	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
4.78862-10	chr9	139923214	139923713	+	0	NA	promoter-TSS (NM_212533)	promoter-TSS (NM_212533)	-89	NM_212533	20	Hs.421202	NM_001606	ENSG00000107331	ABCA2	ABC2	ATP binding cassette subfamily A member 2	protein-coding
0.76756	chr19	3387696	3388195	+	0	NA	intron (NM_005597, intron 2 of 8)	intron (NM_005597, intron 2 of 8)	21380	NM_001245004	4782	Hs.170131	NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
12.2621-3	chr6	112013860	112014359	+	0	NA	intron (NM_002037, intron 12 of 13)	intron (NM_002037, intron 12 of 13)	27156	NM_153047	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
4.14539-12	chr11	125184732	125185231	+	0	NA	intron (NM_022062, intron 2 of 12)	intron (NM_022062, intron 2 of 12)	150422	NM_022062	63876	Hs.278564	NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
29.1721	chr9	100740962	100741461	+	0	NA	Intergenic	Intergenic	-4278	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
4.65974-10	chr20	47846325	47846824	+	0	NA	intron (NM_017895, intron 8 of 20)	intron (NM_017895, intron 8 of 20)	-10742	NM_001319135	6780	Hs.596704	NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
10.1637	chr10	103602815	103603314	+	0	NA	intron (NM_014591, intron 1 of 9)	intron (NM_014591, intron 1 of 9)	613	NM_173191	30819	Hs.97044	NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
3.6251-6	chr7	29481737	29482236	+	0	NA	intron (NM_001293071, intron 5 of 11)	intron (NM_001293071, intron 5 of 11)	-37342	NM_001293075	1124	Hs.654611	NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
11.549-4	chr8	10697305	10697804	+	0	NA	promoter-TSS (NM_001284356)	promoter-TSS (NM_001284356)	18	NR_125432	101929229	Hs.129800	NR_125432		LOC101929229	-	uncharacterized LOC101929229	ncRNA
3.99027-26	chr22	37595247	37595746	+	0	NA	Intergenic	(CCGAG)n|Simple_repeat|Simple_repeat	-11166	NM_182486	114904	Hs.22011	NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
32.3508-2	chr20	24945778	24946277	+	0	NA	intron (NM_020531, intron 8 of 8)	L2|LINE|L2	16161	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
18.2974-5	chr7	18929058	18929557	+	0	NA	intron (NM_178425, intron 21 of 24)	intron (NM_178425, intron 21 of 24)	227988	NM_000474	7291	Hs.66744	NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
0.296531-63	chr14	50360614	50361113	+	0	NA	exon (NM_001663, exon 2 of 2)	exon (NM_001663, exon 2 of 2)	1127	NM_001663	382	Hs.525330	NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
0.296531-48	chr5	14871751	14872250	+	0	NA	promoter-TSS (NM_054027)	promoter-TSS (NM_054027)	-113	NM_054027	56172	Hs.156727	NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
0.48177-17	chr19	14093832	14094331	+	0	NA	exon (NM_002918, exon 4 of 21)	exon (NM_002918, exon 4 of 21)	23053	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
29.7062-3	chr18	57055387	57055886	+	0	NA	Intergenic	Intergenic	-29128	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
12.1396	chr16	58664154	58664653	+	0	NA	promoter-TSS (NM_016284)	promoter-TSS (NM_016284)	-613	NM_206999	23019	Hs.460923	NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|NOT1|NOT1H	CCR4-NOT transcription complex subunit 1	protein-coding
1.83096-9	chrX	101462827	101463326	+	0	NA	Intergenic	Intergenic	-7204	NM_001277423	100996648	Hs.737538	NM_001277423	ENSG00000215029	TCP11X2	-	t-complex 11 family, X-linked 2	protein-coding
3.07153-6	chr10	93169066	93169565	+	0	NA	promoter-TSS (NM_001284274)	promoter-TSS (NM_001284274)	-727	NM_182765	143279	Hs.596096	NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
1.14074-8	chr8	129665517	129666016	+	0	NA	Intergenic	L3|LINE|CR1	-88841	NR_121672	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
3.87216-7	chr3	68836157	68836656	+	0	NA	intron (NM_182522, intron 3 of 5)	intron (NM_182522, intron 3 of 5)	145355	NM_182522	151647	Hs.187873	NM_182522	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	family with sequence similarity 19 member A4, C-C motif chemokine like	protein-coding
1.67491-7	chr7	28032266	28032765	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-187561	NR_034097	100128081	Hs.434307	NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
0.530567-8	chr15	41953870	41954369	+	0	NA	intron (NM_001164273, intron 1 of 23)	CpG	1509	NM_001080541	23269	Hs.187569	NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MGA, MAX dimerization protein	protein-coding
4.68521-9	chr11	12088478	12088977	+	0	NA	Intergenic	Intergenic	36305	NR_135109	105376554	Hs.523483	NR_135109	ENSG00000254486	LOC105376554	-	uncharacterized LOC105376554	ncRNA
2.61219-9	chr15	44067518	44068017	+	0	NA	exon (NM_025165, exon 5 of 11)	exon (NM_025165, exon 5 of 11)	-1527	NM_001199877	10169	Hs.424126	NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
6.14394-3	chr1	52647947	52648446	+	0	NA	intron (NM_007324, intron 1 of 17)	SVA_D|Other|Other	40430	NM_004799	9372	Hs.532345	NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
8.15309-7	chr3	179372096	179372595	+	0	NA	intron (NM_003940, intron 1 of 20)	intron (NM_003940, intron 1 of 20)	1412	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
0.545314-9	chr20	50211489	50211988	+	0	NA	Intergenic	Intergenic	-32368	NM_001258292	4773	Hs.744148	NM_012340	ENSG00000101096	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells 2	protein-coding
0.496351-18	chr7	102257116	102257615	+	0	NA	promoter-TSS (NM_006989)	promoter-TSS (NM_006989)	-160	NM_001079877	10156	Hs.530089	NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
7.61954-24	chr4	2263756	2264255	+	0	NA	promoter-TSS (NM_006454)	promoter-TSS (NM_006454)	-266	NM_006454	10608	Hs.655020	NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
5.00313-11	chr1	32403863	32404362	+	0	NA	promoter-TSS (NM_080391)	promoter-TSS (NM_080391)	-124	NM_080391	8073	Hs.470477	NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
10.0789	chr4	139660821	139661320	+	0	NA	Intergenic	SVA_C|Other|Other	272730	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
4.76254-13	chr1	154973446	154973945	+	0	NA	Intergenic	CpG	-1411	NR_046206	51043	Hs.729279	NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX	zinc finger and BTB domain containing 7B	protein-coding
1.33122-21	chr18	63455540	63456039	+	0	NA	intron (NM_001317214, intron 2 of 10)	intron (NM_001317214, intron 2 of 10)	37901	NM_001317214	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
10.6148-5	chr1	48474572	48475071	+	0	NA	Intergenic	L3|LINE|CR1	-12259	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
6.17983-3	chr18	43753300	43753799	+	0	NA	promoter-TSS (NM_001008239)	promoter-TSS (NM_001008239)	-439	NM_145055	147339	Hs.116486	NM_145055	ENSG00000152242	C18orf25	ARKL1|RNF111L1	chromosome 18 open reading frame 25	protein-coding
32.9328-2	chr14	93566926	93567425	+	0	NA	intron (NM_001142593, intron 2 of 10)	intron (NM_001142593, intron 2 of 10)	15089	NM_001142594	3705	Hs.308122	NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
2.93282-8	chr6	147525651	147526150	+	0	NA	promoter-TSS (NR_034115)	promoter-TSS (NR_034115)	-150	NR_034115	729178	Hs.557608	NR_034115		STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
10.2182	chr13	31181960	31182459	+	0	NA	intron (NM_001313893, intron 1 of 4)	MLT1F|LTR|ERVL-MaLR	9525	NM_001313893	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
0.00434512-25	chr7	50535620	50536119	+	0	NA	intron (NM_001082971, intron 12 of 14)	CpG	-17765	NM_001287494	63979	Hs.137516	NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
4.71083-3	chr21	39498678	39499177	+	0	NA	intron (NR_026839, intron 2 of 2)	intron (NR_026839, intron 2 of 2)	5382	NR_026838	84677	Hs.733345	NM_032589	ENSG00000198054	DSCR8	C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2	Down syndrome critical region 8	ncRNA
5.39102-12	chr22	24316519	24317018	+	0	NA	promoter-TSS (NM_001084392)	promoter-TSS (NM_001084392)	-88	NM_001084392	1652	Hs.656723	NM_001355	ENSG00000099977	DDT	DDCT	D-dopachrome tautomerase	protein-coding
10-5	chr10	69568325	69568824	+	0	NA	intron (NM_021800, intron 3 of 4)	intron (NM_021800, intron 3 of 4)	29363	NM_021800	56521	Hs.260720	NM_021800	ENSG00000108176	DNAJC12	JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
2.43364-8	chr2	44222921	44223420	+	0	NA	promoter-TSS (NM_133259)	promoter-TSS (NM_133259)	-26	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine rich pentatricopeptide repeat containing	protein-coding
0.579919-10	chr6	126146063	126146562	+	0	NA	intron (NM_001199621, intron 2 of 14)	AluJr4|SINE|Alu	-6308	NR_126386	104355145	Hs.590370	NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
2.53366-8	chr1	91487417	91487916	+	0	NA	promoter-TSS (NM_016620)	promoter-TSS (NM_016620)	146	NM_201269	84146	Hs.173001	NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
0.649968-17	chr3	194054398	194054897	+	0	NA	Intergenic	CpG	17410	NM_001291988	1370	Hs.528368	NM_001309	ENSG00000178772	CPN2	ACBP	carboxypeptidase N subunit 2	protein-coding
5.49751-4	chr12	19282713	19283212	+	0	NA	intron (NM_001143821, intron 1 of 27)	CpG	336	NM_001143821	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
5.24329-3	chr6	28554754	28555253	+	0	NA	5' UTR (NM_052923, exon 1 of 4)	5' UTR (NM_052923, exon 1 of 4)	109	NM_052923	114821	Hs.176980	NM_052923	ENSG00000232040	ZBED9	Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	zinc finger BED-type containing 9	protein-coding
22.1896	chr12	2591200	2591699	+	0	NA	intron (NM_001129830, intron 5 of 47)	intron (NM_001129830, intron 5 of 47)	189937	NR_046579	100874235	Hs.667644	NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
2.35824-5	chr3	69129244	69129743	+	0	NA	promoter-TSS (NM_003968)	promoter-TSS (NM_003968)	31	NM_003968	9039	Hs.154320	NM_003968	ENSG00000144744	UBA3	NAE2|UBE1C|hUBA3	ubiquitin like modifier activating enzyme 3	protein-coding
0.127808-22	chr1	38492244	38492743	+	0	NA	Intergenic	Intergenic	14109	NM_016037	51118	Hs.472038	NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11, small subunit processome component homolog (S. cerevisiae)	protein-coding
0.273344-7	chr2	10552465	10552964	+	0	NA	intron (NM_134421, intron 3 of 5)	MLT1J2|LTR|ERVL-MaLR	34261	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
14.8945-3	chr8	99129199	99129698	+	0	NA	promoter-TSS (NM_005836)	promoter-TSS (NM_005836)	-30	NM_005836	10247	Hs.18426	NM_005836	ENSG00000132541	RIDA	HRSP12|P14.5|PSP|UK114	reactive intermediate imine deaminase A homolog	protein-coding
25.2433	chr9	77661785	77662284	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-18688	NR_135282	138199	Hs.567688	NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
29.8716	chr13	111277164	111277663	+	0	NA	intron (NR_040104, intron 3 of 8)	CpG	9482	NM_001242881	55739	Hs.408324	NM_018210	ENSG00000213995	NAXD	CARKD|LP3298	NAD(P)HX dehydratase	protein-coding
0.296531-136	chr6	112484417	112484916	+	0	NA	intron (NM_001105206, intron 13 of 38)	L2a|LINE|L2	-73131	NR_121193	101927640	Hs.510007	NR_121193		LOC101927640	-	uncharacterized LOC101927640	ncRNA
14.7496	chr16	74848807	74849306	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-40327	NM_024306	79152	Hs.461329	NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
0.409586-19	chr22	18041232	18041731	+	0	NA	Intergenic	SVA_F|Other|Other	-1658	NM_001303484	83733	Hs.282982	NM_031481	ENSG00000182902	SLC25A18	GC2	solute carrier family 25 member 18	protein-coding
5.05845-23	chr2	75005566	75006065	+	0	NA	Intergenic	Intergenic	-53967	NM_000189	3099	Hs.406266	NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
1.45087-4	chr3	67375563	67376062	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	99924	NR_036234	100422941		NR_036234	ENSG00000283298	MIR4272	-	microRNA 4272	ncRNA
1.26098-10	chr7	100787179	100787678	+	0	NA	Intergenic	Intergenic	-10258	NM_001283	1174	Hs.489365	NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 sigma 1 subunit	protein-coding
0.76756-26	chr2	145196494	145196993	+	0	NA	intron (NM_001171653, intron 2 of 8)	intron (NM_001171653, intron 2 of 8)	-80438	NR_040248	100303491	Hs.560789	NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
0.680339-4	chr11	44899234	44899733	+	0	NA	intron (NM_130783, intron 2 of 8)	intron (NM_130783, intron 2 of 8)	72276	NM_001318384	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
1.17475-2	chr5	176797657	176798156	+	0	NA	exon (NM_006480, exon 11 of 15)	exon (NM_006480, exon 11 of 15)	13062	NM_006480	10636	Hs.9347	NM_006480	ENSG00000169220	RGS14	-	regulator of G-protein signaling 14	protein-coding
5.9346-2	chr12	93559156	93559655	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	-8737	NR_120492	102724933	Hs.663947	NR_120492	ENSG00000258171	LOC102724933	-	uncharacterized LOC102724933	ncRNA
1.15771-36	chr17	77804507	77805006	+	0	NA	Intergenic	Intergenic	8457	NM_003655	8535	Hs.405046	NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
7.42321-14	chr1	42468134	42468633	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	33213	NR_038261	59269	Hs.403972	NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
2.0621	chr1	27240493	27240992	+	0	NA	promoter-TSS (NM_021969)	promoter-TSS (NM_021969)	-175	NM_021969	8431	Hs.427055	NM_021969	ENSG00000131910	NR0B2	SHP|SHP1	nuclear receptor subfamily 0 group B member 2	protein-coding
31.5058	chr17	68657337	68657836	+	0	NA	Intergenic	Intergenic	491910	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium voltage-gated channel subfamily J member 2	protein-coding
0.0966115-20	chr5	539298	539797	+	0	NA	Intergenic	Intergenic	-3550	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
15.4212	chr9	17532458	17532957	+	0	NA	Intergenic	Intergenic	-46245	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
0.996329-5	chr2	27526169	27526668	+	0	NA	intron (NM_032546, intron 4 of 9)	AluSx3|SINE|Alu	4895	NM_003353	7349	Hs.534363	NM_003353	ENSG00000163794	UCN	UI|UROC	urocortin	protein-coding
3.93619-2	chr6	149092301	149092800	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	24279	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
0.163737-23	chr4	147162950	147163685	+	0	NA	Intergenic	Intergenic	66482	NM_007080	11157	Hs.190520	NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
3.90406-10	chr3	194411600	194412514	+	0	NA	Intergenic	Intergenic	5435	NM_153690	131583	Hs.435080	NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
2.64401-6	chr4	134890563	134891062	+	0	NA	Intergenic	Intergenic	232091	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein cytoplasmic 4 like	protein-coding
0.467237-5	chr2	126737877	126738376	+	0	NA	Intergenic	Intergenic	-675385	NM_016815	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
0.624821-8	chrX	54466272	54466998	+	0	NA	promoter-TSS (NM_058163)	promoter-TSS (NM_058163)	-173	NM_001346789	90121	Hs.522662	NM_058163	ENSG00000158526	TSR2	DBA14|DT1P1A10|WGG1	TSR2, ribosome maturation factor	protein-coding
0.472076-35	chr5	180237113	180237612	+	0	NA	promoter-TSS (NM_001114618)	promoter-TSS (NM_001114618)	-225	NM_001114617	4245	Hs.519818	NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	protein-coding
11.2668-3	chr20	1154305	1154804	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	10563	NM_018354	55321	Hs.516834	NM_018354	ENSG00000125895	TMEM74B	C20orf46	transmembrane protein 74B	protein-coding
4.28291-10	chr1	207494612	207495111	+	0	NA	promoter-TSS (NM_001300902)	promoter-TSS (NM_001300902)	44	NM_001300902	1604	Hs.126517	NM_000574	ENSG00000196352	CD55	CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
0.0261362-26	chr11	122086022	122086521	+	0	NA	intron (NR_137179, intron 2 of 4)	intron (NR_137179, intron 2 of 4)	-12454	NR_024430	399959	Hs.44098	NR_024430		MIR100HG	AGD1|linc-NeD125|lncRNA-N2	mir-100-let-7a-2 cluster host gene	ncRNA
7.35182-7	chr18	43912987	43913486	+	0	NA	promoter-TSS (NR_046357)	promoter-TSS (NR_046357)	-951	NR_046357	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
2.26214	chr4	146540260	146540759	+	0	NA	promoter-TSS (NM_172250)	promoter-TSS (NM_172250)	-31	NM_172250	166785	Hs.452864	NM_172250	ENSG00000151611	MMAA	cblA	methylmalonic aciduria (cobalamin deficiency) cblA type	protein-coding
5.9176-7	chr22	21609393	21609892	+	0	NA	Intergenic	Intergenic	-27072	NR_024583	29797	Hs.396963	NM_001029950		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin like 8, pseudogene	pseudo
5.40608-2	chr18	60905837	60906336	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	80527	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
0.783135-6	chr20	2215469	2215968	+	0	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	28144	NM_001287682	388780	Hs.132163	NM_001287682		LOC388780	-	uncharacterized LOC388780	protein-coding
1.30768-13	chr12	85863177	85863676	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	189390	NM_006982	8092	Hs.41683	NM_006982	ENSG00000180318	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding
1.63043-7	chr9	21803060	21803559	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	674	NM_002451	4507	Hs.193268	NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
19.4692-2	chr7	146067159	146067658	+	0	NA	intron (NM_014141, intron 1 of 23)	AluSz|SINE|Alu	253955	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
0.888424-29	chr6	1390443	1390942	+	0	NA	promoter-TSS (NR_106778)	promoter-TSS (NR_106778)	-46	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
0.127808-18	chr12	64845592	64846091	+	0	NA	promoter-TSS (NM_013254)	promoter-TSS (NM_013254)	1	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	FTDALS4|NAK|T2K	TANK binding kinase 1	protein-coding
1.53663-18	chr18	73347058	73347557	+	0	NA	Intergenic	Intergenic	77051	NR_134646	100505853	Hs.146758	NR_134646	ENSG00000261194	LINC01898	-	long intergenic non-protein coding RNA 1898	ncRNA
0.609802-8	chr7	100026653	100027152	+	0	NA	promoter-TSS (NM_017984)	promoter-TSS (NM_017984)	-352	NM_019606	56257	Hs.178011	NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
5.33132-12	chr9	33721982	33722481	+	0	NA	Intergenic	Intergenic	16183	NR_109755	101929688	Hs.372465	NR_109755	ENSG00000233776	LINC01251	-	long intergenic non-protein coding RNA 1251	ncRNA
1.7134-8	chr6	151712749	151713248	+	0	NA	promoter-TSS (NM_020861)	promoter-TSS (NM_020861)	-163	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
5.30178	chr17	8076226	8076725	+	0	NA	3' UTR (NM_032354, exon 5 of 5)	3' UTR (NM_032354, exon 5 of 5)	3239	NM_183065	84314	Hs.513933	NM_032354	ENSG00000179029	TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding
1.56767-10	chr2	25142274	25142773	+	0	NA	intron (NM_004036, intron 1 of 21)	CpG	363	NM_001320613	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC-III|AC3	adenylate cyclase 3	protein-coding
13.8195-3	chr4	124521044	124521543	+	0	NA	Intergenic	Intergenic	-52647	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
3.92545-2	chr4	154266726	154267225	+	0	NA	intron (NR_045605, intron 1 of 9)	intron (NR_045605, intron 1 of 9)	1174	NR_045605	84057	Hs.294088	NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
1.69411-5	chr8	85516870	85517369	+	0	NA	intron (NM_001100391, intron 2 of 8)	intron (NM_001100391, intron 2 of 8)	-101043	NM_001287244	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
0.809219-20	chr4	4996705	4997204	+	0	NA	Intergenic	Intergenic	24243	NM_018659	54360	Hs.13872	NM_018659	ENSG00000170891	CYTL1	C17|C4orf4	cytokine like 1	protein-coding
2.22573-3	chr4	76649410	76649909	+	0	NA	promoter-TSS (NM_003715)	promoter-TSS (NM_003715)	-47	NM_001290049	8615	Hs.744877	NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
0.496351-9	chr12	131200835	131201334	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	122735	NM_194356	2054	Hs.437585	NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
0.118872-17	chr6	148881022	148881521	+	0	NA	Intergenic	CpG	50984	NM_001346509	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
18.3268-2	chr4	158217790	158218289	+	0	NA	intron (NM_001083620, intron 2 of 15)	L2c|LINE|L2	76219	NM_001083620	2891	Hs.32763	NM_000826	ENSG00000120251	GRIA2	GLUR2|GLURB|GluA2|GluR-K2|HBGR2	glutamate ionotropic receptor AMPA type subunit 2	protein-coding
2.70026	chrX	21758979	21759478	+	0	NA	intron (NR_045617, intron 3 of 5)	intron (NR_045617, intron 3 of 5)	17050	NR_045617	23676	Hs.86492	NM_014332	ENSG00000091482	SMPX	DFN6|DFNX4	small muscle protein, X-linked	protein-coding
5.31653-7	chr18	56815364	56815863	+	0	NA	intron (NM_033280, intron 1 of 5)	intron (NM_033280, intron 1 of 5)	8524	NM_033280	90701	Hs.45107	NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
1.88425-2	chr15	40975951	40976450	+	0	NA	Intergenic	SVA_D|Other|Other	11103	NR_040058	100505648	Hs.586876	NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1 (head to head)	ncRNA
1.01275-5	chr1	188457099	188457598	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	1044588	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
21.3312	chr2	46566746	46567551	+	0	NA	intron (NM_001430, intron 1 of 15)	MLT1A0|LTR|ERVL-MaLR	42607	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
2.79014-17	chr21	35571759	35572258	+	0	NA	Intergenic	Intergenic	19030	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
1.12383-4	chr12	111685985	111686484	+	0	NA	intron (NM_015267, intron 3 of 21)	intron (NM_015267, intron 3 of 21)	-55712	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
1.07905-10	chr13	31440779	31441278	+	0	NA	Intergenic	Intergenic	-15671	NR_103813	440132	Hs.729493	NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
21.2436-2	chr7	157644359	157644858	+	0	NA	intron (NM_130843, intron 11 of 21)	intron (NM_130843, intron 11 of 21)	-2669	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
0.604807-9	chr2	128284425	128284924	+	0	NA	promoter-TSS (NM_017969)	promoter-TSS (NM_017969)	-587	NM_017969	55677	Hs.469879	NM_017969	ENSG00000163166	IWS1	-	IWS1, SUPT6H interacting protein	protein-coding
1.22053-23	chr1	33343330	33343829	+	0	NA	Intergenic	MIRb|SINE|MIR	-5486	NM_001171941	252995	Hs.524234	NM_153756	ENSG00000160097	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
2.66001-30	chr8	26434677	26435176	+	0	NA	promoter-TSS (NM_001244604)	promoter-TSS (NM_001244604)	-414	NM_001386	1808	Hs.593187	NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
1.10138-5	chr6	125283132	125283631	+	0	NA	promoter-TSS (NM_001286398)	promoter-TSS (NM_001286398)	-310	NR_136734	154214	Hs.12876	NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding
0.695604-8	chr20	21076819	21077318	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-29556	NM_001163023	55857	Hs.187635	NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
2.35077-11	chr6	125905632	125906131	+	0	NA	Intergenic	Intergenic	-89618	NR_038906	643623	Hs.520367	NR_038906	ENSG00000224506	LOC643623	-	uncharacterized LOC643623	ncRNA
0.070049-65	chr2	74641410	74641909	+	0	NA	exon (NM_001145054, exon 4 of 4)	exon (NM_001145054, exon 4 of 4)	3185	NM_001145054	388963	Hs.445377	NM_001145054	ENSG00000159239	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
0.609802-25	chr17	28804150	28804649	+	0	NA	promoter-TSS (NM_004871)	promoter-TSS (NM_004871)	-27	NM_004871	9527	Hs.462680	NM_004871	ENSG00000108587	GOSR1	GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28	golgi SNAP receptor complex member 1	protein-coding
6.38272-8	chr16	1660580	1661079	+	0	NA	TTS (NR_135176)	TTS (NR_135176)	1280	NM_014714	9742	Hs.389438	NM_014714	ENSG00000187535	IFT140	MZSDS|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140	protein-coding
0.496351-40	chr12	26279277	26279776	+	0	NA	Intergenic	CpG	-1523	NM_030762	79365	Hs.177841	NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
0.0612309-14	chr6	129857684	129858183	+	0	NA	Intergenic	Intergenic	173437	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
1.49354-6	chr15	76078453	76078952	+	0	NA	Intergenic	Intergenic	-24046	NR_036198	100423035		NR_036198	ENSG00000261043	MIR4313	-	microRNA 4313	ncRNA
6.88246-9	chr6	33290962	33291461	+	0	NA	promoter-TSS (NM_001141969)	promoter-TSS (NM_001141969)	-418	NM_001141970	1616	Hs.336916	NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1	death domain associated protein	protein-coding
3.49692-14	chr9	67042018	67042517	+	0	NA	Intergenic	Intergenic	-10195	NR_046175	286297	Hs.645503	NR_046175		LOC286297	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
2.45652	chr7	65669307	65669806	+	0	NA	promoter-TSS (NM_003596)	promoter-TSS (NM_003596)	-703	NM_003596	8460	Hs.421194	NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
0.409586-40	chr1	1850038	1850537	+	0	NA	intron (NM_178545, intron 3 of 4)	CpG	453	NM_178545	339456	Hs.123423	NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
1.37869-27	chr1	161431503	161432002	+	0	NA	Intergenic	CpG	-43453	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
6.81937	chr20	50825647	50826146	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-17372	NM_199427	55734	Hs.473082	NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
1.26098-4	chr6	133833449	133833948	+	0	NA	intron (NR_109982, intron 6 of 8)	intron (NR_109982, intron 6 of 8)	271061	NM_001301013	2070	Hs.596680	NM_004100	ENSG00000112319	EYA4	CMD1J|DFNA10	EYA transcriptional coactivator and phosphatase 4	protein-coding
0.783135-31	chr20	4790318	4790817	+	0	NA	intron (NM_014737, intron 2 of 11)	LTR16A1|LTR|ERVL	5202	NM_170774	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
0.634863-3	chr2	222436662	222437161	+	0	NA	exon (NM_004438, exon 1 of 18)	exon (NM_004438, exon 1 of 18)	167	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
4.38899-8	chr18	43678248	43678747	+	0	NA	promoter-TSS (NM_004046)	promoter-TSS (NM_004046)	-178	NM_001257334	498	Hs.298280	NM_004046	ENSG00000152234	ATP5A1	ATP5A|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	protein-coding
5.867-6	chr5	31291575	31292074	+	0	NA	intron (NM_004932, intron 2 of 11)	intron (NM_004932, intron 2 of 11)	98062	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
6.30784-18	chr14	62161770	62162269	+	0	NA	promoter-TSS (NM_181054)	promoter-TSS (NM_181054)	-100	NM_001530	3091	Hs.597216	NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 alpha subunit	protein-coding
0.428718-24	chr11	27223657	27224156	+	0	NA	intron (NR_125766, intron 2 of 4)	MIRb|SINE|MIR	16409	NR_125768	103695435	Hs.196133	NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
0.241089-32	chrX	129039774	129040273	+	0	NA	promoter-TSS (NM_001166221)	promoter-TSS (NM_001166221)	-74	NM_006649	10813	Hs.458598	NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|dJ537K23.3	UTP14A small subunit processome component	protein-coding
20.3058	chr3	71592419	71592918	+	0	NA	promoter-TSS (NM_001244816)	promoter-TSS (NM_001244816)	40	NM_001244816	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
12.1396-2	chr7	80023028	80023527	+	0	NA	Intergenic	Intergenic	-19522	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
5.62249-9	chr12	14922767	14923266	+	0	NA	TTS (NM_175054)	TTS (NM_175054)	1049	NM_175054	121504	Hs.745457	NM_175054	ENSG00000197837	HIST4H4	H4/p	histone cluster 4 H4	protein-coding
13.1426-2	chr4	129731994	129732493	+	0	NA	promoter-TSS (NM_001287441)	promoter-TSS (NM_001287441)	-182	NM_001287441	79960	Hs.12420	NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
1.51195-22	chr2	101767636	101768135	+	0	NA	promoter-TSS (NR_135594)	promoter-TSS (NR_135594)	24	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding
2.30623-14	chr8	123791306	123791805	+	0	NA	Intergenic	Intergenic	-2346	NM_014943	22882	Hs.377090	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
11.5927-2	chr6	43597565	43598064	+	0	NA	promoter-TSS (NM_019096)	promoter-TSS (NM_019096)	535	NM_001003690	9587	Hs.122346	NM_014628	ENSG00000124688	MAD2L1BP	CMT2	MAD2L1 binding protein	protein-coding
1.09579-20	chr20	3766698	3767197	+	0	NA	promoter-TSS (NM_001287516)	promoter-TSS (NM_001287516)	390	NM_001810	1059	Hs.516855	NM_001810	ENSG00000125817	CENPB	-	centromere protein B	protein-coding
5.81699-11	chr9	137570565	137571064	+	0	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	-26125	NR_138049	414316	Hs.571561	NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
3.05395-10	chr1	68786027	68786526	+	0	NA	Intergenic	MIR3|SINE|MIR	-87992	NM_024911	79971	Hs.647659	NM_024911	ENSG00000116729	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
1.26098-11	chr14	89972994	89973493	+	0	NA	intron (NM_001085471, intron 1 of 6)	SVA_D|Other|Other	-69317	NR_024620	29018	Hs.673124	NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
5.54396-2	chr1	15727083	15727582	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-9059	NM_024329	79180	Hs.465374	NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
0.296531-104	chr8	86562355	86562854	+	0	NA	Intergenic	MIR|SINE|MIR	5301	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog-like 2, pseudogene	pseudo
0.118872-15	chrX	152662641	152663140	+	0	NA	Intergenic	Intergenic	-20891	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
4.31798-15	chr11	118530075	118530574	+	0	NA	intron (NM_007180, intron 11 of 14)	intron (NM_007180, intron 11 of 14)	15606	NR_106773	102466719		NR_106773	ENSG00000019144	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
0.741724-9	chr17	27055588	27056087	+	0	NA	promoter-TSS (NM_178170)	promoter-TSS (NM_178170)	5	NM_178170	284086	Hs.448468	NM_178170	ENSG00000160602	NEK8	JCK|NEK12A|NPHP9|RHPD2	NIMA related kinase 8	protein-coding
2.98432-14	chr9	34138313	34138812	+	0	NA	Intergenic	SVA_D|Other|Other	-11791	NM_015397	25853	Hs.493750	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
14.6471	chr9	79339949	79340448	+	0	NA	intron (NM_001308047, intron 6 of 17)	intron (NM_001308047, intron 6 of 17)	-32867	NM_001308050	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding
1.84422-7	chr7	21583108	21583819	+	0	NA	intron (NM_001277115, intron 1 of 81)	intron (NM_001277115, intron 1 of 81)	630	NM_001277115	8701	Hs.520245	NM_001277115	ENSG00000105877	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein axonemal heavy chain 11	protein-coding
3.43902-14	chr9	19127227	19127726	+	0	NA	non-coding (NR_038064, exon 1 of 7)	non-coding (NR_038064, exon 1 of 7)	128	NM_001122	123	Hs.3416	NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
1.78486-13	chr7	12443067	12443566	+	0	NA	non-coding (NR_144534, exon 1 of 30)	non-coding (NR_144534, exon 1 of 30)	251	NR_144534	221806	Hs.669526	NM_001135924	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding
0.296531-71	chr19	6279838	6280337	+	0	NA	promoter-TSS (NM_005934)	promoter-TSS (NM_005934)	-128	NM_005934	4298	Hs.10095	NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1, super elongation complex subunit	protein-coding
2.61219-7	chr4	1283274	1283773	+	0	NA	promoter-TSS (NR_123716)	promoter-TSS (NR_123716)	-116	NM_001017405	10296	Hs.139896	NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|PIG5	macrophage erythroblast attacher	protein-coding
8.26814-23	chr13	42832770	42833269	+	0	NA	Intergenic	MER61C|LTR|ERV1	-13270	NM_016248	11215	Hs.105105	NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
0.555173-15	chr16	2318083	2318582	+	0	NA	promoter-TSS (NR_132988)	promoter-TSS (NR_132988)	81	NM_001286627	10921	Hs.355643	NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
32.9328-3	chr14	96231346	96231845	+	0	NA	Intergenic	Intergenic	-51062	NM_021966	8115	Hs.2484	NM_021966	ENSG00000100721	TCL1A	TCL1	T-cell leukemia/lymphoma 1A	protein-coding
0.070049-35	chr7	119912805	119913304	+	0	NA	promoter-TSS (NM_012281)	promoter-TSS (NM_012281)	-668	NM_012281	3751	Hs.654739	NM_012281	ENSG00000184408	KCND2	KV4.2|RK5	potassium voltage-gated channel subfamily D member 2	protein-coding
8.60121-7	chr15	42424605	42425104	+	0	NA	Intergenic	MIRb|SINE|MIR	23985	NM_213600	255189	Hs.231873	NM_213600	ENSG00000168907	PLA2G4F	PLA2G4FZ	phospholipase A2 group IVF	protein-coding
0.93665-2	chr17	78589176	78589675	+	0	NA	intron (NM_001163034, intron 1 of 29)	intron (NM_001163034, intron 1 of 29)	70800	NM_020761	57521	Hs.133044	NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
0.400052-28	chr17	21837206	21837705	+	0	NA	Intergenic	Intergenic	12085	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27E5	FAM27L	family with sequence similarity E5	ncRNA
2.52588-3	chr1	41385112	41385611	+	0	NA	Intergenic	Intergenic	-57343	NM_133467	163732	Hs.355820	NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
1.14639-6	chr15	91446866	91447365	+	0	NA	promoter-TSS (NR_135504)	promoter-TSS (NR_135504)	-305	NR_135504	4122	Hs.116459	NM_006122	ENSG00000196547	MAN2A2	MANA2X	mannosidase alpha class 2A member 2	protein-coding
1.83096-7	chr1	95006962	95007461	+	0	NA	5' UTR (NM_001993, exon 1 of 6)	5' UTR (NM_001993, exon 1 of 6)	202	NM_001178096	2152	Hs.62192	NM_001993	ENSG00000117525	F3	CD142|TF|TFA	coagulation factor III, tissue factor	protein-coding
0.856568-13	chr2	1370337	1370836	+	0	NA	intron (NM_018968, intron 16 of 16)	intron (NM_018968, intron 16 of 16)	-46647	NM_001206744	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
2.38824-10	chr7	1851987	1852486	+	0	NA	Intergenic	Intergenic	31653	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
7.35182-12	chr9	139516046	139516545	+	0	NA	Intergenic	Intergenic	-4662	NR_135288	401561	Hs.609301	NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
0.376307-22	chr1	87800932	87801431	+	0	NA	intron (NM_006769, intron 2 of 4)	CpG	7030	NM_006769	8543	Hs.436792	NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
24.034-4	chr5	170187065	170187564	+	0	NA	Intergenic	Intergenic	-23409	NM_001291985	2568	Hs.26225	NM_014211	ENSG00000094755	GABRP	-	gamma-aminobutyric acid type A receptor pi subunit	protein-coding
4.28291-2	chr10	135121160	135121659	+	0	NA	promoter-TSS (NM_145806)	promoter-TSS (NM_145806)	-984	NR_130127	118472	Hs.422113	NM_145806	ENSG00000198546	ZNF511	-	zinc finger protein 511	protein-coding
0.282604-18	chr7	155249906	155250405	+	0	NA	promoter-TSS (NM_001427)	promoter-TSS (NM_001427)	-669	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
8.56985-6	chr13	100632895	100633394	+	0	NA	promoter-TSS (NM_007129)	promoter-TSS (NM_007129)	-882	NM_007129	7546	Hs.653700	NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
3.61511-4	chr2	110744269	110744768	+	0	NA	promoter-TSS (NR_046110)	promoter-TSS (NR_046110)	-39	NR_046112	440894	Hs.516403	NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
0.0261362-55	chr11	63570250	63570749	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-10347	NM_138471	144097	Hs.502793	NM_138471	ENSG00000168005	C11orf84	-	chromosome 11 open reading frame 84	protein-coding
0.209071-33	chr9	133873621	133874120	+	0	NA	Intergenic	Intergenic	-10634	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	laminin subunit gamma 3	protein-coding
0.851282-16	chr10	104214610	104215109	+	0	NA	intron (NR_038937, intron 4 of 4)	LTR5_Hs|LTR|ERVK	-3559	NM_024886	79946	Hs.225084	NM_024886		C10orf95	-	chromosome 10 open reading frame 95	protein-coding
37.4715-2	chr3	109619517	109620016	+	0	NA	Intergenic	Intergenic	298091	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
1.62412-20	chr7	95156659	95157158	+	0	NA	intron (NM_016116, intron 2 of 4)	intron (NM_016116, intron 2 of 4)	41695	NM_145872	51666	Hs.602765	NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
28.3863	chrX	37526936	37527435	+	0	NA	intron (NM_001170331, intron 4 of 4)	MSTB1|LTR|ERVL-MaLR	-17824	NM_021083	7504	Hs.78919	NM_021083	ENSG00000047597	XK	KX|NA|NAC|X1k|XKR1	X-linked Kx blood group	protein-coding
1.07349-3	chr5	64777484	64777983	+	0	NA	promoter-TSS (NR_135689)	promoter-TSS (NR_135689)	14	NR_135689	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
0.163737-9	chr3	67022443	67022942	+	0	NA	Intergenic	Intergenic	-26035	NM_032505	84541	Hs.116665	NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
5.21434-11	chr17	4757268	4757767	+	0	NA	intron (NM_001024937, intron 1 of 31)	intron (NM_001024937, intron 1 of 31)	20882	NM_015716	50488	Hs.443417	NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
10.942	chr7	1021856	1022355	+	0	NA	promoter-TSS (NM_017781)	promoter-TSS (NM_017781)	-730	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
10.5899	chr13	61041105	61041604	+	0	NA	intron (NM_001146070, intron 4 of 13)	intron (NM_001146070, intron 4 of 13)	69927	NM_001146070	81550	Hs.525061	NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
0.273344-19	chr7	142985629	142986128	+	0	NA	promoter-TSS (NM_001224)	promoter-TSS (NM_001224)	570	NM_032983	835	Hs.368982	NM_001224	ENSG00000106144	CASP2	CASP-2|ICH1|NEDD-2|NEDD2|PPP1R57	caspase 2	protein-coding
0.195421-12	chr17	72968637	72969136	+	0	NA	promoter-TSS (NM_030630)	promoter-TSS (NM_030630)	14	NM_030630	283987	Hs.11067	NM_030630	ENSG00000167861	HID1	C17orf28|DMC1|HID-1	HID1 domain containing	protein-coding
0.491485-2	chr2	191044484	191044983	+	0	NA	promoter-TSS (NM_001042519)	promoter-TSS (NM_001042519)	-856	NM_001042519	84281	Hs.389311	NM_032321	ENSG00000187699	C2orf88	smAKAP	chromosome 2 open reading frame 88	protein-coding
1.11821-7	chr15	31631681	31632180	+	0	NA	intron (NM_001302461, intron 1 of 1)	intron (NM_001302461, intron 1 of 1)	12872	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
1.02373-25	chr1	9747466	9747965	+	0	NA	promoter-TSS (NR_126366)	promoter-TSS (NR_126366)	-83	NR_126367	101929074	Hs.661762	NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
0.141246-14	chr22	22020055	22020554	+	0	NA	promoter-TSS (NM_001317996)	promoter-TSS (NM_001317996)	31	NM_014337	23759	Hs.438587	NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
8.09668-6	chr19	28305157	28306026	+	0	NA	Intergenic	L1PA4|LINE|L1	-20743	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
5.25784-12	chr19	570891	571390	+	0	NA	promoter-TSS (NM_198590)	promoter-TSS (NM_198590)	-137	NM_198590	682	Hs.501293	NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|OK|TCSF	basigin (Ok blood group)	protein-coding
1.4752-5	chr5	119483951	119484450	+	0	NA	Intergenic	SVA_C|Other|Other	-315773	NM_001300783	51334	Hs.157461	NM_016644	ENSG00000184838	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
2.99296-10	chr6	36592890	36593389	+	0	NA	Intergenic	Intergenic	-2850	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
3.44862-6	chr7	73002177	73002676	+	0	NA	Intergenic	Intergenic	-9413	NM_012453	26608	Hs.647044	NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
11.3253-3	chr21	35576663	35577162	+	0	NA	Intergenic	Intergenic	23934	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
2.79014-6	chr4	123749002	123749501	+	0	NA	intron (NM_002006, intron 1 of 2)	MIRb|SINE|MIR	1388	NM_002006	2247	Hs.284244	NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
1.43271-6	chr3	11760586	11761451	+	0	NA	intron (NM_001284390, intron 1 of 6)	CpG	1224	NM_001284390	9686	Hs.740389	NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
3.17855-9	chr6	2245390	2245889	+	0	NA	promoter-TSS (NR_046229)	promoter-TSS (NR_046229)	229	NM_001500	2762	Hs.144496	NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
0.457575-11	chr4	151248421	151248920	+	0	NA	intron (NM_006726, intron 49 of 57)	intron (NM_006726, intron 49 of 57)	249244	NM_001040260	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
0.670192-10	chr7	144780495	144780994	+	0	NA	Intergenic	L1PB1|LINE|L1	-247598	NM_022445	27010	Hs.660232	NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
3.54578-3	chr12	21797834	21798333	+	0	NA	intron (NM_001174097, intron 3 of 7)	LTR5_Hs|LTR|ERVK	12645	NM_001174097	3945	Hs.446149	NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
0.32452-24	chr8	71581132	71581631	+	0	NA	promoter-TSS (NM_016027)	promoter-TSS (NM_016027)	66	NM_016027	51110	Hs.118554	NM_016027	ENSG00000147592	LACTB2	CGI-83	lactamase beta 2	protein-coding
0.371573-21	chr16	81634641	81635140	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-10063	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
4.27128-14	chr18	55862614	55863113	+	0	NA	5' UTR (NM_001144970, exon 1 of 29)	5' UTR (NM_001144970, exon 1 of 29)	241	NM_001144970	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
1.39063-21	chr12	57636343	57636842	+	0	NA	TTS (NM_001286256)	TTS (NM_001286256)	-2117	NM_020142	56901	Hs.75069	NM_020142	ENSG00000185633	NDUFA4L2	NUOMS	NDUFA4, mitochondrial complex associated like 2	protein-coding
2.88193-6	chr11	96777468	96777967	+	0	NA	Intergenic	Intergenic	536128	NR_135097	105369443	Hs.599377	NR_135097	ENSG00000256684	LOC105369443	-	uncharacterized LOC105369443	ncRNA
0.540393-47	chr3	79378254	79378753	+	0	NA	intron (NM_002941, intron 2 of 30)	L3|LINE|CR1	-82374	NR_110133	101927374	Hs.570644	NR_110133		LOC101927374	-	uncharacterized LOC101927374	ncRNA
0.301184-17	chr16	3011621	3012120	+	0	NA	Intergenic	Intergenic	-2347	NM_172229	79412	Hs.661128	NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
0.0966115-2	chr20	25037877	25038376	+	0	NA	intron (NM_032501, intron 1 of 13)	CpG	692	NM_001252677	84532	Hs.529353	NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
2.1254-13	chr13	26827809	26828308	+	0	NA	promoter-TSS (NM_001346501)	promoter-TSS (NM_001346501)	-183	NM_001318368	1024	Hs.382306	NM_001260	ENSG00000132964	CDK8	K35	cyclin dependent kinase 8	protein-coding
0.634863-7	chr16	77245855	77246354	+	0	NA	intron (NM_001129979, intron 8 of 10)	CpG-9532	12755	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
4.24812-8	chr1	234746485	234746984	+	0	NA	Intergenic	CpG	-1463	NM_001077397	359948	Hs.350268	NM_182972	ENSG00000168264	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding
0.245682-27	chr3	126152853	126153352	+	0	NA	exon (NM_182628, exon 15 of 17)	exon (NM_182628, exon 15 of 17)	39320	NM_182628	348807	Hs.591305	NM_182628	ENSG00000163885	CFAP100	CCDC37|MIA1	cilia and flagella associated protein 100	protein-coding
5.55955-11	chr16	81659077	81659576	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	14373	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
0.540393-28	chr7	44170647	44171146	+	0	NA	Intergenic	Intergenic	-7727	NM_006230	5425	Hs.306791	NM_006230	ENSG00000106628	POLD2	-	DNA polymerase delta 2, accessory subunit	protein-coding
0.118872-36	chr20	10652029	10652528	+	0	NA	intron (NM_000214, intron 2 of 25)	intron (NM_000214, intron 2 of 25)	2416	NM_000214	182	Hs.224012	NM_000214	ENSG00000101384	JAG1	AGS|AGS1|AHD|AWS|CD339|HJ1|JAGL1	jagged 1	protein-coding
5.65431-4	chr16	66550610	66551109	+	0	NA	intron (NM_001271935, intron 6 of 7)	intron (NM_001271935, intron 6 of 7)	32869	NM_001272050	7084	Hs.512619	NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31	thymidine kinase 2, mitochondrial	protein-coding
1.97911-3	chr5	78907699	78908198	+	0	NA	promoter-TSS (NM_173797)	promoter-TSS (NM_173797)	-295	NM_001114394	167153	Hs.418198	NM_173797	ENSG00000164329	PAPD4	GLD2|TUT2	poly(A) RNA polymerase D4, non-canonical	protein-coding
27.3518-2	chr1	55515832	55516331	+	0	NA	intron (NM_174936, intron 3 of 11)	intron (NM_174936, intron 3 of 11)	10186	NR_110451	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
14.7237	chr18	46478371	46478870	+	0	NA	Intergenic	CpG-11785	-1539	NM_005904	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
3.63512-24	chr13	21388593	21389092	+	0	NA	intron (NM_022459, intron 9 of 22)	intron (NM_022459, intron 9 of 22)	-40745	NM_001318939	221143	Hs.26674	NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding
8.06875-5	chr7	23677882	23678381	+	0	NA	intron (NM_138771, intron 3 of 3)	SVA_E|Other|Other	41133	NM_138771	90693	Hs.232296	NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
0.0744648-7	chr15	55582538	55583037	+	0	NA	promoter-TSS (NM_183235)	promoter-TSS (NM_183235)	-774	NM_183235	5873	Hs.626665	NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
1.77178-10	chr11	82169737	82170236	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-55031	NR_120571	101928989	Hs.145117	NR_120571	ENSG00000245832	MIR4300HG	-	MIR4300 host gene	ncRNA
10.2319-3	chr8	36945443	36945942	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-33779	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
0.118872-50	chr12	49725254	49725753	+	0	NA	TTS (NM_005480)	TTS (NM_005480)	5468	NM_001008223	338761	Hs.380386	NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
18.7615-2	chr19	5961916	5962415	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	16155	NM_007322	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
10.1055	chr13	113946707	113947206	+	0	NA	Intergenic	LTR24|LTR|ERV1	-4513	NM_005561	3916	Hs.494419	NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
1.59267-5	chr16	53119830	53120329	+	0	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	31134	NM_025134	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
0.15923-38	chr15	20775584	20776083	+	0	NA	intron (NR_027411, intron 12 of 17)	intron (NR_027411, intron 12 of 17)	8159	NR_027411	729786	Hs.592025	NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
1.54282-2	chr15	38856215	38856714	+	0	NA	intron (NM_001306086, intron 1 of 14)	CpG	543	NM_001128602	10125	Hs.591127	NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1	protein-coding
2.30623-3	chr11	10805721	10806220	+	0	NA	Intergenic	Intergenic	17185	NR_004403	692223	Hs.723086	NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
1.03474-9	chr14	96342644	96343143	+	0	NA	promoter-TSS (NR_038861)	promoter-TSS (NR_038861)	164	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
0.227338-11	chr1	90273881	90274380	+	0	NA	Intergenic	Intergenic	-12443	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
6.00326-7	chr14	75725635	75726134	+	0	NA	Intergenic	CpG	-19597	NM_005252	2353	Hs.25647	NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
1.09579-4	chr14	55518037	55518536	+	0	NA	promoter-TSS (NM_144578)	promoter-TSS (NM_144578)	-76	NM_144578	93487	Hs.594338	NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
7.21246-12	chr16	20912647	20913146	+	0	NA	intron (NM_001302835, intron 1 of 5)	L2|LINE|L2	470	NM_001302835	57149	Hs.745012	NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
15.4975-4	chr10	5569673	5570172	+	0	NA	Intergenic	Intergenic	-1713	NR_120496	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
14.5842	chr13	107001944	107002443	+	0	NA	Intergenic	Intergenic	-26718	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
4.19075-2	chr1	200708356	200708855	+	0	NA	promoter-TSS (NM_001297708)	promoter-TSS (NM_001297708)	-81	NM_203459	23271	Hs.23585	NM_203459	ENSG00000118200	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin associated protein family member 2	protein-coding
1.54902-18	chr12	23443843	23444342	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	115522	NR_120471	101928441	Hs.129111	NR_120471	ENSG00000256321	LOC101928441	-	uncharacterized LOC101928441	ncRNA
0.584886-18	chr22	19419253	19419752	+	0	NA	promoter-TSS (NM_001318152)	promoter-TSS (NM_001318152)	77	NM_003776	64976	Hs.431307	NM_003776	ENSG00000185608	MRPL40	L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM	mitochondrial ribosomal protein L40	protein-coding
0.390538-11	chr4	37281780	37282279	+	0	NA	intron (NM_001144990, intron 1 of 6)	MER6A|DNA|TcMar-Tigger	35339	NM_001144990	57495	Hs.4280	NM_001144990	ENSG00000174145	NWD2	KIAA1239	NACHT and WD repeat domain containing 2	protein-coding
2.9073-6	chr5	16618157	16618656	+	0	NA	intron (NR_109946, intron 1 of 3)	L1ME3|LINE|L1	-1239	NM_001034850	54463	Hs.481704	NM_019000	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134 member B	protein-coding
3.56547-14	chr2	231707020	231707519	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-22044	NM_001287240	81618	Hs.111577	NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
9.62574-12	chr14	30290884	30291383	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	105766	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
1.73277-21	chr9	132171002	132171501	+	0	NA	Intergenic	Intergenic	72049	NR_120685	100506119	Hs.624047	NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
0.218195-2	chr11	116706564	116707063	+	0	NA	promoter-TSS (NR_126362)	promoter-TSS (NR_126362)	-20	NR_126362	104326055	Hs.627813	NR_126362	ENSG00000235910	APOA1-AS	-	APOA1 antisense RNA	ncRNA
2.9073-7	chr17	75524675	75525174	+	0	NA	Intergenic	CpG	-18099	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
0.540393-20	chr21	45148377	45148876	+	0	NA	intron (NM_003681, intron 1 of 10)	CpG	9648	NM_003681	8566	Hs.284491	NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
7.98603-6	chr15	99396331	99396830	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	68925	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
1.39662-30	chr11	64781299	64781798	+	0	NA	promoter-TSS (NR_037650)	promoter-TSS (NR_037650)	-37	NM_001199745	402	Hs.502836	NM_001667	ENSG00000213465	ARL2	ARFL2	ADP ribosylation factor like GTPase 2	protein-coding
3.43902-17	chr1	64881718	64882217	+	0	NA	Intergenic	SVA_D|Other|Other	-54509	NM_020925	57685	Hs.443891	NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
0.540393-29	chr11	12806446	12806945	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	110726	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
4.59671-11	chr4	1857548	1858047	+	0	NA	5' UTR (NM_012318, exon 1 of 14)	5' UTR (NM_012318, exon 1 of 14)	177	NM_012318	3954	Hs.120165	NM_012318	ENSG00000168924	LETM1	-	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
8.72895-5	chr6	83315367	83315866	+	0	NA	Intergenic	Intergenic	241655	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
5.37602-3	chr22	28583441	28583940	+	0	NA	intron (NM_001145418, intron 5 of 22)	intron (NM_001145418, intron 5 of 22)	-267090	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA
1.09579-22	chr12	92963817	92964533	+	0	NA	Intergenic	Intergenic	103720	NR_144532	100507616	Hs.339918	NR_144532		LOC100507616	-	uncharacterized LOC100507616	ncRNA
6.07303-6	chr9	4665223	4665722	+	0	NA	TTS (NM_203453)	TTS (NM_203453)	1202	NM_001039395	55064	Hs.179615	NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
0.204516-15	chr10	22609711	22610210	+	0	NA	promoter-TSS (NM_005180)	promoter-TSS (NM_005180)	-179	NM_005180	648	Hs.380403	NM_005180	ENSG00000168283	BMI1	FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1	BMI1 proto-oncogene, polycomb ring finger	protein-coding
2.58848-11	chr14	95236027	95236526	+	0	NA	promoter-TSS (NR_144432)	promoter-TSS (NR_144432)	223	NM_173849	145258	Hs.440438	NM_173849	ENSG00000133937	GSC	SAMS	goosecoid homeobox	protein-coding
0.231917-26	chr2	20550519	20551018	+	0	NA	promoter-TSS (NM_001282752)	promoter-TSS (NM_001282752)	-157	NM_015317	23369	Hs.467824	NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
0.438316-13	chr13	50181082	50181581	+	0	NA	Intergenic	Intergenic	-21104	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
4.15669	chr2	131129692	131130191	+	0	NA	exon (NM_001142370, exon 9 of 11)	exon (NM_001142370, exon 9 of 11)	16361	NM_001142370	26469	Hs.516390	NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase, non-receptor type 18	protein-coding
0.315171	chr4	185766305	185766804	+	0	NA	non-coding (NR_037867, exon 2 of 2)	non-coding (NR_037867, exon 2 of 2)	1646	NR_037867	731424	Hs.427740	NR_037867		MIR3945HG	-	MIR3945 host gene	ncRNA
6.0206-13	chr4	3615907	3616406	+	0	NA	Intergenic	Intergenic	37560	NR_040045	285492	Hs.145563	NM_173661		LINC00955	-	long intergenic non-protein coding RNA 955	ncRNA
0.736576-28	chr2	158114983	158115482	+	0	NA	exon (NM_014568, exon 1 of 10)	exon (NM_014568, exon 1 of 10)	1122	NM_001329868	11227	Hs.269027	NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
0.172766-47	chr12	121036873	121037372	+	0	NA	Intergenic	MIRc|SINE|MIR	-17921	NM_198202	51367	Hs.279913	NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
6.45892-7	chr1	230428786	230429285	+	0	NA	Intergenic	Intergenic	132639	NM_001258311	79605	Hs.520463	NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
1.43271-18	chrX	40035765	40036264	+	0	NA	intron (NM_001123384, intron 1 of 13)	C-rich|Low_complexity|Low_complexity	568	NM_001123383	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
4.9485-3	chr8	10405483	10405982	+	0	NA	intron (NM_001197020, intron 4 of 4)	intron (NM_001197020, intron 4 of 4)	22676	NM_198464	203074	Hs.591394	NM_198464	ENSG00000184647	PRSS55	CT153|T-SP1|TSP1|UNQ9391	protease, serine 55	protein-coding
1.39662-3	chr9	85854077	85854576	+	0	NA	Intergenic	MER50|LTR|ERV1	27876	NM_001244962	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
1.82435-18	chr6	83775230	83775729	+	0	NA	promoter-TSS (NM_001304437)	promoter-TSS (NM_001304437)	81	NM_198920	90025	Hs.148609	NM_198920	ENSG00000118420	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
0.952845-29	chr8	6590633	6591132	+	0	NA	intron (NM_018361, intron 4 of 7)	intron (NM_018361, intron 4 of 7)	-11803	NR_039803	100616348		NR_039803	ENSG00000266038	MIR4659A	mir-4659a	microRNA 4659a	ncRNA
0.680339-34	chr12	3308725	3309224	+	0	NA	intron (NM_006675, intron 2 of 8)	CpG	122453	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
3.35358-2	chr1	205227323	205227822	+	0	NA	intron (NM_001331034, intron 1 of 3)	intron (NM_001331034, intron 1 of 3)	1247	NM_001331034	9911	Hs.6360	NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
6.88246-7	chr10	48038721	48039220	+	0	NA	Intergenic	Intergenic	-116973	NR_033407	1517	Hs.568350	NR_033407		CTSLP2	CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4	cathepsin L pseudogene 2	pseudo
3.69572	chr18	47047624	47048123	+	0	NA	Intergenic	Intergenic	-28938	NM_001199345	6139	Hs.293653	NM_000985	ENSG00000215472	RPL17	L17|PD-1|RPL23	ribosomal protein L17	protein-coding
0.00434512-12	chr2	124751239	124751738	+	0	NA	Intergenic	Intergenic	-31376	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
15.6703-5	chr2	142465029	142465528	+	0	NA	intron (NM_018557, intron 2 of 90)	intron (NM_018557, intron 2 of 90)	423992	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
33.7469	chr1	242281796	242282295	+	0	NA	intron (NM_001320272, intron 7 of 10)	intron (NM_001320272, intron 7 of 10)	-119660	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
17.3993-2	chr18	29523163	29523984	+	0	NA	promoter-TSS (NM_014939)	promoter-TSS (NM_014939)	-482	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
7.16699-12	chr7_gl000195_random	92583	93082	+	0	NA	Intergenic	Intergenic	-6097	NM_001347682	389831	Hs.743984	NM_001242480	ENSG00000276256	LOC389831	-	uncharacterized LOC389831	protein-coding
1.70696-3	chr16	70834888	70835387	+	0	NA	promoter-TSS (NM_018052)	promoter-TSS (NM_018052)	-76	NM_018052	55697	Hs.445061	NM_018052	ENSG00000103043	VAC14	ArPIKfyve|SNDC|TAX1BP2|TRX	Vac14, PIKFYVE complex component	protein-coding
14.5223	chr8	124417618	124418117	+	0	NA	Intergenic	L1MC4a|LINE|L1	-9162	NM_014109	29028	Hs.370834	NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family, AAA domain containing 2	protein-coding
0.0744648-12	chr12	59314061	59314560	+	0	NA	promoter-TSS (NM_153377)	promoter-TSS (NM_153377)	9	NM_153377	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
28.3565	chr6	41256122	41256621	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-1888	NR_136332	54210	Hs.283022	NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
3.59519-3	chr10	120924753	120925252	+	0	NA	intron (NM_213649, intron 1 of 13)	CpG	202	NR_110305	119559	Hs.655168	NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18	sideroflexin 4	protein-coding
1.67491-8	chr5	105195473	105195972	+	0	NA	Intergenic	SVA_C|Other|Other	760547	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
6.65546-2	chr8	42773524	42774023	+	0	NA	intron (NM_032410, intron 2 of 21)	SVA_B|Other|Other	21740	NM_032410	84376	Hs.162852	NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
2.54925-9	chr12	12503225	12503724	+	0	NA	promoter-TSS (NM_018050)	promoter-TSS (NM_018050)	-305	NM_018050	54682	Hs.591145	NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
4.80172-11	chr12	49982756	49983255	+	0	NA	intron (NM_032130, intron 5 of 6)	intron (NM_032130, intron 5 of 6)	16405	NR_027450	84070	Hs.524406	NM_032130	ENSG00000135436	FAM186B	C12orf25	family with sequence similarity 186 member B	protein-coding
1.33122-35	chr10	77163900	77164399	+	0	NA	intron (NR_110302, intron 1 of 1)	CpG-2974	226	NR_110302	100131213	Hs.534598	NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
0.0174066-7	chr12	2144011	2144510	+	0	NA	Intergenic	Intergenic	-13258	NR_046768	100874369	Hs.208723	NR_046768	ENSG00000256257	CACNA1C-IT2	-	CACNA1C intronic transcript 2	ncRNA
8.09668-4	chr8	123549908	123550407	+	0	NA	intron (NR_131202, intron 2 of 3)	intron (NR_131202, intron 2 of 3)	30726	NR_131202	105375734	Hs.628341	NR_131202		LOC105375734	-	uncharacterized LOC105375734	ncRNA
2.44125-13	chr1	50847723	50848222	+	0	NA	Intergenic	SVA_D|Other|Other	41147	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
11.3077	chr12	70597045	70597544	+	0	NA	Intergenic	SVA_E|Other|Other	-39480	NM_014515	4848	Hs.133350	NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
3.53596-16	chr5	1406760	1407259	+	0	NA	intron (NM_001044, intron 11 of 14)	L1MB3|LINE|L1	-26821	NR_125810	100506791	Hs.146092	NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
9.46922-5	chr11	9635497	9635996	+	0	NA	Intergenic	CpG	39512	NM_001143976	7465	Hs.249441	NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
3.54578-5	chr1	236658617	236659116	+	0	NA	Intergenic	(CACCC)n|Simple_repeat|Simple_repeat	-22648	NM_201545	3964	Hs.4082	NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
0.79355-29	chr21	34198798	34199297	+	0	NA	Intergenic	Intergenic	-12994	NM_001162495	56245	Hs.517235	NM_019596	ENSG00000205929	C21orf62	B37|C21orf120|PRED81	chromosome 21 open reading frame 62	protein-coding
0.190881-17	chr1	161129284	161129783	+	0	NA	TTS (NM_016406)	TTS (NM_016406)	279	NM_001319848	27005	Hs.8015	NM_012475	ENSG00000143258	USP21	USP16|USP23	ubiquitin specific peptidase 21	protein-coding
23.5952	chr18	53156825	53157324	+	0	NA	intron (NM_001330604, intron 3 of 19)	intron (NM_001330604, intron 3 of 19)	10622	NR_039754	100616290		NR_039754	ENSG00000264571	MIR4529	-	microRNA 4529	ncRNA
7.18967-4	chr19	18589673	18590172	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	-40811	NM_001170938	51477	Hs.405873	NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
2.84833-13	chr16	56965301	56966238	+	0	NA	promoter-TSS (NM_001010989)	promoter-TSS (NM_001010989)	-233	NM_001010989	9709	Hs.146393	NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
34.6218	chr7	127471334	127471833	+	0	NA	intron (NM_014390, intron 11 of 23)	intron (NM_014390, intron 11 of 23)	-165979	NR_027330	27099	Hs.657377	NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
12.2768	chr14	19640680	19641179	+	0	NA	Intergenic	Intergenic	-9103	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
23.7161	chr8	100836282	100836781	+	0	NA	intron (NM_152564, intron 51 of 61)	intron (NM_152564, intron 51 of 61)	69711	NM_004374	1345	Hs.351875	NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
1.42065-10	chr3	86596721	86597220	+	0	NA	Intergenic	Intergenic	65877	NR_135563	101927494	Hs.385622	NR_135563	ENSG00000241328	LINC02070	-	long intergenic non-protein coding RNA 2070	ncRNA
3.99027-4	chr9	134165252	134165751	+	0	NA	exon (NM_032728, exon 1 of 2)	exon (NM_032728, exon 1 of 2)	420	NM_032728	84814	Hs.134292	NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
17.9588-3	chr1	40157905	40158404	+	0	NA	promoter-TSS (NM_001282396)	promoter-TSS (NM_001282396)	-772	NM_016257	51440	Hs.743975	NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
0.209071-19	chr2	236986803	236987302	+	0	NA	intron (NM_001037131, intron 16 of 17)	MLT2C1|LTR|ERVL	89600	NM_001301687	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
6.47817-8	chr1	38019645	38020144	+	0	NA	promoter-TSS (NM_024700)	promoter-TSS (NM_024700)	51	NM_024700	79753	Hs.47232	NM_024700	ENSG00000163877	SNIP1	PMRED	Smad nuclear interacting protein 1	protein-coding
5.04456-4	chr8	142170924	142171423	+	0	NA	intron (NM_014957, intron 9 of 22)	intron (NM_014957, intron 9 of 22)	32453	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
5.14279-6	chr6	108879039	108879538	+	0	NA	Intergenic	CpG	-1738	NM_201559	2309	Hs.220950	NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
1.97226-7	chr7	158989867	158990366	+	0	NA	Intergenic	L2b|LINE|L2	-52467	NR_130758	7434	Hs.585052	NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
1.22053-28	chr5	14168869	14169368	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	25307	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
5.04456-5	chr12	133137406	133137905	+	0	NA	intron (NM_001142641, intron 5 of 16)	intron (NM_001142641, intron 5 of 16)	-20928	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
0.877779-14	chr3	44379869	44380368	+	0	NA	5' UTR (NM_001282914, exon 1 of 11)	5' UTR (NM_001282914, exon 1 of 11)	174	NM_001029839	285343	Hs.55131	NM_173826	ENSG00000179152	TCAIM	C3orf23|TOAG-1|TOAG1	T-cell activation inhibitor, mitochondrial	protein-coding
2.05512-8	chr9	79675017	79675516	+	0	NA	Intergenic	SVA_D|Other|Other	40695	NM_001013735	442425	Hs.553843	NM_001013735	ENSG00000204612	FOXB2	bA159H20.4	forkhead box B2	protein-coding
1.22053-17	chr5	25851356	25851855	+	0	NA	Intergenic	LTR1B|LTR|ERV1	660543	NR_136209	105374693	Hs.628714	NR_136209		LOC105374693	-	uncharacterized LOC105374693	ncRNA
0.599818	chr6	166796565	166797064	+	0	NA	promoter-TSS (NM_001270879)	promoter-TSS (NM_001270879)	-313	NM_001270879	51660	Hs.172755	NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|dJ68L15.3	mitochondrial pyruvate carrier 1	protein-coding
4.49772-11	chr2	38830377	38830876	+	0	NA	promoter-TSS (NM_001142650)	promoter-TSS (NM_001142650)	-448	NM_138394	92906	Hs.445497	NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
9.58607-4	chr2	11152320	11152819	+	0	NA	Intergenic	Intergenic	100506	NM_002236	3754	Hs.23735	NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
2.66001-16	chr10	99176889	99177388	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-8744	NM_002629	5223	Hs.632918	NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
0.33389-12	chr20	37488881	37489380	+	0	NA	intron (NM_001172735, intron 2 of 9)	MER33|DNA|hAT-Charlie	54794	NM_015568	26051	Hs.45719	NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
1.43271-17	chr21	38905356	38905855	+	0	NA	Intergenic	LTR41|LTR|ERVL	113004	NM_130438	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
0.419142-25	chr5	114631756	114632255	+	0	NA	promoter-TSS (NM_152549)	promoter-TSS (NM_152549)	-18	NM_152549	153733	Hs.436121	NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
0.296531-124	chr9_gl000199_random	116529	117028	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
17.0333	chr1	117560204	117560703	+	0	NA	intron (NM_001256109, intron 5 of 9)	intron (NM_001256109, intron 5 of 9)	16081	NM_001256106	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
2.63603-10	chr19	9791138	9791637	+	0	NA	Intergenic	SVA_D|Other|Other	-5611	NM_001300885	54811	Hs.371107	NM_017656	ENSG00000171466	ZNF562	-	zinc finger protein 562	protein-coding
29.393-2	chr8	125586570	125587069	+	0	NA	intron (NM_014751, intron 6 of 13)	intron (NM_014751, intron 6 of 13)	35476	NM_005005	4715	Hs.15977	NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
11.9044	chr6	3457722	3458221	+	0	NA	Intergenic	Intergenic	-1178	NM_001286456	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
14.7625-5	chr20	57866737	57867236	+	0	NA	Intergenic	Intergenic	-8496	NM_207034	1908	Hs.1408	NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
11.9314	chr14	105853874	105854373	+	0	NA	intron (NM_001100913, intron 19 of 24)	intron (NM_001100913, intron 19 of 24)	-10797	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
0.670192-9	chr7	75821086	75821585	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-9876	NM_001291831	222183	Hs.511025	NM_001039212	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
5.30178-6	chr13	54841383	54841882	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	44551	NR_031628	100302187		NR_031628	ENSG00000283126	MIR1297	MIRN1297|hsa-mir-1297|mir-1297	microRNA 1297	ncRNA
13.1336	chr1	87667496	87667995	+	0	NA	Intergenic	Intergenic	-10607	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
1.73277-22	chr20	61297811	61298310	+	0	NA	promoter-TSS (NR_024470)	promoter-TSS (NR_024470)	-87	NR_024470	100127888	Hs.671273	NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA
60.4624	chr3	974928	975427	+	0	NA	Intergenic	Intergenic	-159165	NM_001289080	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
1.9382	chr1	17867040	17867539	+	0	NA	intron (NM_018125, intron 1 of 28)	intron (NM_018125, intron 1 of 28)	959	NR_137288	55160	Hs.443460	NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding
0.268721-47	chr10	4705242	4705741	+	0	NA	TTS (NR_015425)	TTS (NR_015425)	7143	NR_015425	338588	Hs.121365	NR_015425		LINC00705	-	long intergenic non-protein coding RNA 705	ncRNA
3.6251-7	chr1	54699534	54700033	+	0	NA	intron (NM_001009955, intron 13 of 16)	SVA_F|Other|Other	-2333	NR_103541	619518	Hs.591438	NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
12.2915	chr17_gl000204_random	7126	7625	+	0	NA	NA	Intergenic	NA	NA								
4.92144-6	chr8	143820661	143821160	+	0	NA	Intergenic	CpG	2919	NM_020427	57152	Hs.103505	NM_020427	ENSG00000126233	SLURP1	ANUP|ARS|ArsB|LY6LS|MDM	secreted LY6/PLAUR domain containing 1	protein-coding
0.472076-20	chr1	202038681	202039180	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-53099	NM_004767	9283	Hs.132049	NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
0.856568-3	chr6	28510588	28511087	+	0	NA	Intergenic	Intergenic	14729	NR_144470	2880	Hs.248129	NM_001509	ENSG00000224586	GPX5	HEL-S-75p	glutathione peroxidase 5	protein-coding
1.81115-17	chr8	17354211	17354710	+	0	NA	promoter-TSS (NM_001008539)	promoter-TSS (NM_001008539)	-137	NM_001008539	6542	Hs.448520	NM_003046	ENSG00000003989	SLC7A2	ATRC2|CAT2|HCAT2	solute carrier family 7 member 2	protein-coding
2.00659-17	chr8	72987417	72987916	+	0	NA	5' UTR (NM_007332, exon 1 of 27)	5' UTR (NM_007332, exon 1 of 27)	153	NM_007332	8989	Hs.716816	NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS	transient receptor potential cation channel subfamily A member 1	protein-coding
4.82804-5	chr8	68254387	68254886	+	0	NA	intron (NM_006421, intron 1 of 38)	intron (NM_006421, intron 1 of 38)	1276	NM_006421	10565	Hs.656902	NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
0.655015	chr9	95955585	95956084	+	0	NA	intron (NM_001282394, intron 1 of 29)	intron (NM_001282394, intron 1 of 29)	8622	NM_006648	65268	Hs.654856	NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
12.1968-3	chr14	105331211	105331710	+	0	NA	promoter-TSS (NM_001112726)	promoter-TSS (NM_001112726)	-190	NM_001112726	283638	Hs.533721	NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
3.99027-14	chr22	36232244	36232743	+	0	NA	intron (NM_001082578, intron 2 of 13)	intron (NM_001082578, intron 2 of 13)	4137	NM_014309	23543	Hs.282998	NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog 2	protein-coding
9.62574-16	chr13	48640627	48641126	+	0	NA	Intergenic	MER61C|LTR|ERV1	-10397	NR_046511	100873965	Hs.616241	NR_046511	ENSG00000229111	MED4-AS1	MED4-AS	MED4 antisense RNA 1	ncRNA
0.070049-66	chr3	14494242	14494741	+	0	NA	intron (NR_103507, intron 5 of 13)	intron (NR_103507, intron 5 of 13)	50415	NM_001134368	6533	Hs.529488	NM_003043	ENSG00000131389	SLC6A6	TAUT	solute carrier family 6 member 6	protein-coding
1.33122-33	chr9	35757183	35757682	+	0	NA	Intergenic	Intergenic	-3158	NM_001044264	692094	Hs.571601	NM_001044264	ENSG00000215183	MSMP	PSMP	microseminoprotein, prostate associated	protein-coding
1.53663	chr16	67193479	67193978	+	0	NA	promoter-TSS (NM_001323552)	promoter-TSS (NM_001323552)	84	NM_003789	8717	Hs.460996	NM_003789	ENSG00000102871	TRADD	Hs.89862	TNFRSF1A associated via death domain	protein-coding
32.9328	chr3	193461754	193462253	+	0	NA	Intergenic	Intergenic	-116882	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
4.77556-7	chr11	63449163	63449662	+	0	NA	intron (NR_049750, intron 1 of 5)	intron (NR_049750, intron 1 of 5)	490	NM_001265590	10313	Hs.743229	NM_006054	ENSG00000133318	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
0.496351-33	chr12	46119523	46120022	+	0	NA	non-coding (NR_028408, exon 1 of 1)	non-coding (NR_028408, exon 1 of 1)	1932	NR_028408	400027	Hs.597122	NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
3.49692-5	chr6	166816364	166816863	+	0	NA	Intergenic	L1MB8|LINE|L1	-20112	NM_001270879	51660	Hs.172755	NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|dJ68L15.3	mitochondrial pyruvate carrier 1	protein-coding
0.888424-17	chr12	122310251	122310750	+	0	NA	intron (NM_001171993, intron 1 of 15)	intron (NM_001171993, intron 1 of 15)	-13731	NM_002150	3242	Hs.2899	NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
1.27844-13	chr22	37861667	37862166	+	0	NA	Intergenic	L2a|LINE|L2	20509	NM_001166343	4242	Hs.517603	NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
23.5853-3	chr17	63546866	63547365	+	0	NA	intron (NM_004655, intron 2 of 10)	MIR|SINE|MIR	10625	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
0.195421-10	chr16	56823197	56823696	+	0	NA	intron (NM_001242796, intron 1 of 19)	intron (NM_001242796, intron 1 of 19)	6078	NM_001242796	9688	Hs.276878	NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
10.2319-2	chr2	134997581	134998080	+	0	NA	Intergenic	Intergenic	-14000	NM_002410	4249	Hs.4988	NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
0.00434512-23	chr3	173887960	173888459	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-249623	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
0.0392635-9	chr3	192162225	192162724	+	0	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	-35636	NM_021032	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
4.65974-5	chrUn_gl000225	949	1448	+	0	NA	NA	Intergenic	NA	NA								
0.352691-16	chr5	106426134	106426633	+	0	NA	Intergenic	Intergenic	-79668	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
0.685421-2	chr3	9690814	9691313	+	0	NA	promoter-TSS (NM_022485)	promoter-TSS (NM_022485)	-54	NM_001077526	64419	Hs.475382	NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
7.56962-8	chr8	8174502	8175001	+	0	NA	TTS (NM_001080826)	TTS (NM_001080826)	64593	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related kinase activating pseudokinase 1	protein-coding
3.20572-11	chr12	110198211	110198710	+	0	NA	intron (NM_032829, intron 2 of 2)	intron (NM_032829, intron 2 of 2)	12832	NR_026661	84983	Hs.675961	NM_032897	ENSG00000255650	FAM222A-AS1	-	FAM222A antisense RNA 1	ncRNA
2.40332-3	chr2	132430791	132431290	+	0	NA	Intergenic	Intergenic	36442	NR_108087	101927994	Hs.635757	NR_108087	ENSG00000224559	LINC01087	-	long intergenic non-protein coding RNA 1087	ncRNA
3.9794-23	chr4	52917934	52918433	+	0	NA	intron (NR_144359, intron 1 of 8)	CpG	686	NR_123728	132671	Hs.527090	NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
10.1278-4	chr10	62885505	62886004	+	0	NA	Intergenic	Intergenic	109721	NR_108052	100507058	Hs.145227	NR_108052	ENSG00000227244	LINC00845	-	long intergenic non-protein coding RNA 845	ncRNA
0.0656377	chr8	134387316	134387815	+	0	NA	Intergenic	MIRc|SINE|MIR	-78018	NM_001135242	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
1.33122-16	chr17	17752334	17752833	+	0	NA	intron (NM_001288788, intron 10 of 11)	intron (NM_001288788, intron 10 of 11)	-12258	NM_001005291	6720	Hs.592123	NM_004176	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|SREBP1a|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
0.594835-15	chr18	54756105	54756604	+	0	NA	Intergenic	Intergenic	-17004	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
0.93665	chr16	50508045	50508544	+	0	NA	Intergenic	Intergenic	-73947	NM_033119	85407	Hs.187578	NM_033119	ENSG00000140807	NKD1	Naked1	naked cuticle homolog 1	protein-coding
35.157	chr9	7777742	7778241	+	0	NA	Intergenic	Intergenic	21815	NM_001318059	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
0.118872-44	chr1	156716345	156716844	+	0	NA	intron (NR_135008, intron 1 of 6)	intron (NR_135008, intron 1 of 6)	4491	NM_001319188	3068	Hs.743948	NM_004494	ENSG00000143321	HDGF	HMG1L2	hepatoma-derived growth factor	protein-coding
1.93142-12	chrX	93313679	93314178	+	0	NA	Intergenic	Intergenic	384916	NM_173698	286499	Hs.110069	NM_173698	ENSG00000179083	FAM133A	CT115	family with sequence similarity 133 member A	protein-coding
2.18963-5	chr2	156163624	156164123	+	0	NA	Intergenic	Intergenic	608780	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding
0.599818-31	chr7	124404837	124405336	+	0	NA	5' UTR (NM_005302, exon 1 of 2)	5' UTR (NM_005302, exon 1 of 2)	993	NM_005302	2861	Hs.406094	NM_005302	ENSG00000170775	GPR37	EDNRBL|PAELR|hET(B)R-LP	G protein-coupled receptor 37	protein-coding
0.154727-14	chr5	102952708	102953207	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-54455	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding
4.81486	chr5	96062364	96062863	+	0	NA	intron (NM_001330634, intron 3 of 27)	intron (NM_001330634, intron 3 of 27)	-16631	NR_104285	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding
3.16953-7	chr19	41111134	41111633	+	0	NA	exon (NM_003573, exon 6 of 34)	exon (NM_003573, exon 6 of 34)	4106	NM_001042545	8425	Hs.466766	NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
0.0524306-10	chr17	45727829	45728328	+	0	NA	promoter-TSS (NM_001276453)	promoter-TSS (NM_001276453)	-484	NM_001276453	3837	Hs.532793	NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
0.222764-22	chr14	51134338	51134837	+	0	NA	intron (NM_021818, intron 1 of 4)	CpG	484	NM_021818	60485	Hs.642842	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
1.92465-16	chr17	80709516	80710015	+	0	NA	promoter-TSS (NM_005993)	promoter-TSS (NM_005993)	-175	NM_005993	6904	Hs.464391	NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
12.6761-3	chr1	86875028	86875527	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-13252	NM_001184766	57489	Hs.149360	NM_020729	ENSG00000122417	ODF2L	dJ977L11.1	outer dense fiber of sperm tails 2 like	protein-coding
22.2548-2	chr9	137725387	137725886	+	0	NA	intron (NM_001278074, intron 64 of 65)	intron (NM_001278074, intron 64 of 65)	15579	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
9.06578-14	chr1	170283883	170284382	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-30783	NR_026957	284688	Hs.135668	NR_026957	ENSG00000224286	LINC01142	-	long intergenic non-protein coding RNA 1142	ncRNA
0.419142-53	chr11	3114340	3114839	+	0	NA	intron (NM_145638, intron 16 of 20)	intron (NM_145638, intron 16 of 20)	-35908	NM_001751	833	Hs.274873	NM_001751	ENSG00000110619	CARS	CARS1|CYSRS|MGC:11246	cysteinyl-tRNA synthetase	protein-coding
8.41638-2	chr13	50173143	50173642	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13673	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding
1.74574	chr2	219824721	219825220	+	0	NA	exon (NM_003936, exon 1 of 1)	exon (NM_003936, exon 1 of 1)	620	NM_003936	8941	Hs.158460	NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
0.366845-13	chr4	182064304	182064803	+	0	NA	intron (NR_033918, intron 2 of 2)	intron (NR_033918, intron 2 of 2)	15749	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
1.08463-9	chr1	214628182	214628681	+	0	NA	intron (NM_005401, intron 2 of 18)	intron (NM_005401, intron 2 of 18)	96593	NM_005401	5784	Hs.193557	NM_005401	ENSG00000152104	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
6.94649-4	chr7	37269859	37270358	+	0	NA	intron (NM_001206482, intron 8 of 21)	MIRc|SINE|MIR	123164	NM_001206482	9844	Hs.434989	NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
1.63043-9	chr17	15732195	15732694	+	0	NA	Intergenic	Intergenic	-11388	NR_110839	101928567	Hs.569757	NR_110839	ENSG00000237057	LINC02087	-	long intergenic non-protein coding RNA 2087	ncRNA
2.11832-19	chr12	31142659	31143158	+	0	NA	intron (NM_001080509, intron 7 of 7)	intron (NM_001080509, intron 7 of 7)	63070	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
20.4964-4	chr17	77409685	77410184	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	102296	NM_001082575	146713	Hs.135229	NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog 3	protein-coding
1.27844-5	chr21	42417471	42417970	+	0	NA	Intergenic	Intergenic	102271	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
2.08309-3	chr12	65152453	65152952	+	0	NA	promoter-TSS (NM_001330187)	promoter-TSS (NM_001330187)	524	NM_002076	2799	Hs.334534	NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
2.58848-7	chr18	73495537	73496036	+	0	NA	Intergenic	Intergenic	-71428	NR_134646	100505853	Hs.146758	NR_134646	ENSG00000261194	LINC01898	-	long intergenic non-protein coding RNA 1898	ncRNA
1.57391-13	chr3	79027193	79027692	+	0	NA	intron (NM_002941, intron 3 of 30)	intron (NM_002941, intron 3 of 30)	41167	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding
0.414361-4	chr9	29514252	29514751	+	0	NA	Intergenic	LTR1D|LTR|ERV1	-301503	NM_001258282	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
4.76254-6	chr3	120277951	120278450	+	0	NA	Intergenic	Intergenic	-36928	NM_004547	4710	Hs.304613	NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
1.16339-17	chr7	86941449	86941948	+	0	NA	Intergenic	Intergenic	33110	NR_015381	11257	Hs.274329	NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1	TP53 target 1 (non-protein coding)	ncRNA
2.18245-7	chr7	21963147	21963646	+	0	NA	intron (NM_001127371, intron 1 of 8)	intron (NM_001127371, intron 1 of 8)	22146	NM_001127370	55536	Hs.744069	NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
10.3953-2	chr3	72307858	72308357	+	0	NA	Intergenic	Intergenic	107699	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
16.4782-3	chr4	86663064	86663563	+	0	NA	intron (NM_001025616, intron 3 of 9)	intron (NM_001025616, intron 3 of 9)	19692	NR_039656	100616349		NR_039656	ENSG00000266421	MIR4451	mir-4451	microRNA 4451	ncRNA
11.1919-2	chr5	123621055	123621554	+	0	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	152909	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
9.46922	chr2	37425310	37425809	+	0	NA	intron (NM_001322375, intron 1 of 4)	intron (NM_001322375, intron 1 of 4)	1955	NM_001322373	100505876	Hs.666958	NM_001322373	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	protein-coding
2.8735-7	chr12	86769741	86770240	+	0	NA	intron (NM_013244, intron 2 of 6)	AluJb|SINE|Alu	462691	NM_013244	25834	Hs.589093	NM_013244	ENSG00000182050	MGAT4C	GNTIVH|HGNT-IV-H	MGAT4 family member C	protein-coding
9.20819-17	chr12	19120702	19121201	+	0	NA	Intergenic	Intergenic	-161675	NM_001256470	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
0.788339-5	chr12	131432599	131433098	+	0	NA	Intergenic	LTR9|LTR|ERV1	-5604	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	ADGRD1	GPR133|PGR25	adhesion G protein-coupled receptor D1	protein-coding
0.00869459-9	chr5	13218471	13218970	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	550749	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
1.70696-10	chr3	126200584	126201083	+	0	NA	3' UTR (NM_001165974, exon 21 of 21)	3' UTR (NM_001165974, exon 21 of 21)	-6071	NM_001040653	79364	Hs.440049	NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
3.63512-9	chr18	46203084	46203583	+	0	NA	intron (NM_014772, intron 6 of 11)	intron (NM_014772, intron 6 of 11)	6362	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
4.13413-12	chr7	5468095	5468594	+	0	NA	Intergenic	CpG-23978	-5167	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
3.17855-10	chr11	93862358	93862857	+	0	NA	exon (NM_015368, exon 1 of 5)	exon (NM_015368, exon 1 of 5)	513	NM_015368	24145	Hs.591976	NM_015368	ENSG00000110218	PANX1	MRS1|PX1|UNQ2529	pannexin 1	protein-coding
1.17475-9	chr8	27168262	27168761	+	0	NA	promoter-TSS (NM_173174)	promoter-TSS (NM_173174)	325	NM_171982	23087	Hs.104223	NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
7.69551	chr1	100865825	100866324	+	0	NA	intron (NM_033312, intron 4 of 14)	intron (NM_033312, intron 4 of 14)	48051	NM_033313	8556	Hs.127411	NM_003672	ENSG00000079335	CDC14A	DFNB105|cdc14|hCDC14	cell division cycle 14A	protein-coding
3.1158-7	chr1	175041485	175041984	+	0	NA	intron (NM_022093, intron 1 of 18)	intron (NM_022093, intron 1 of 18)	4740	NM_022093	63923	Hs.156369	NM_022093	ENSG00000120332	TNN	TN-W	tenascin N	protein-coding
0.145735-4	chr13	113817178	113817677	+	0	NA	exon (NM_003891, exon 4 of 8)	exon (NM_003891, exon 4 of 8)	4459	NM_001256134	8858	Hs.1011	NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
0.181814-23	chr5	18281938	18282437	+	0	NA	Intergenic	Intergenic	474804	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
6.25252-3	chr9	116364563	116365062	+	0	NA	Intergenic	MIR3|SINE|MIR	8378	NM_001276262	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
6.34512-14	chr2	75367353	75367852	+	0	NA	intron (NM_015727, intron 1 of 3)	intron (NM_015727, intron 1 of 3)	49663	NR_049796	100846995		NR_049796	ENSG00000263909	MIR5000	-	microRNA 5000	ncRNA
0.540393-21	chr13	99083253	99083752	+	0	NA	exon (NM_001286839, exon 18 of 28)	exon (NM_001286839, exon 18 of 28)	90877	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
4.46117-4	chr9	88356334	88356833	+	0	NA	intron (NM_001330701, intron 1 of 25)	CpG	361	NM_001330701	23287	Hs.719980	NM_015239	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
30.0349-2	chr12	40564345	40564844	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-54219	NM_198578	120892	Hs.187636	NM_198578	ENSG00000188906	LRRK2	AURA17|DARDARIN|PARK8|RIPK7|ROCO2	leucine rich repeat kinase 2	protein-coding
3.8405-14	chr1	182993084	182993583	+	0	NA	intron (NM_002293, intron 1 of 27)	CpG	738	NM_002293	3915	Hs.609663	NM_002293	ENSG00000135862	LAMC1	LAMB2	laminin subunit gamma 1	protein-coding
3.01899-9	chr14	79841598	79842097	+	0	NA	intron (NM_001105250, intron 1 of 6)	intron (NM_001105250, intron 1 of 6)	96165	NM_001272020	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
0.0833099-33	chr2	43454161	43454660	+	0	NA	promoter-TSS (NM_006887)	promoter-TSS (NM_006887)	60	NR_027251	100129726	Hs.194480	NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
0.00434512-38	chr2	71558667	71559166	+	0	NA	promoter-TSS (NM_001014972)	promoter-TSS (NM_001014972)	31	NM_014497	27332	Hs.434401	NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
0.385789-10	chr1	168194749	168195248	+	0	NA	promoter-TSS (NM_199344)	promoter-TSS (NM_199344)	-257	NM_199344	375035	Hs.645435	NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
0.172766-46	chr2	110053713	110054212	+	0	NA	intron (NM_001099289, intron 7 of 9)	intron (NM_001099289, intron 7 of 9)	-123881	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
0.486625-12	chr1	75430271	75430770	+	0	NA	Intergenic	Intergenic	-163599	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
1.41463-13	chr8	85094331	85094830	+	0	NA	promoter-TSS (NM_001100392)	promoter-TSS (NM_001100392)	-873	NM_001100392	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
26.6756	chr14	27086712	27087211	+	0	NA	Intergenic	L1PA16|LINE|L1	-20001	NM_002515	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
0.25028-32	chr15	84948182	84948681	+	0	NA	Intergenic	Intergenic	-28786	NR_120379	103171574	Hs.694638	NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
1.27844-15	chr1	54303985	54304484	+	0	NA	promoter-TSS (NM_001168551)	promoter-TSS (NM_001168551)	-9	NM_018087	55706	Hs.476525	NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
0.856568-28	chr1	155164129	155164628	+	0	NA	promoter-TSS (NR_030281)	promoter-TSS (NR_030281)	-590	NR_030281	693235		NR_030281	ENSG00000231064	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
1.54282-4	chr2	171210867	171211366	+	0	NA	intron (NM_001083615, intron 8 of 33)	intron (NM_001083615, intron 8 of 33)	-3663	NR_110576	101929753	Hs.534101	NR_110576		LOC101929753	-	uncharacterized LOC101929753	ncRNA
10.4479	chr5	80717924	80718423	+	0	NA	intron (NM_001345886, intron 15 of 15)	intron (NM_001345886, intron 15 of 15)	-28185	NM_130767	134526	Hs.591756	NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
2.652-2	chr7	105316247	105316746	+	0	NA	intron (NM_020725, intron 3 of 11)	intron (NM_020725, intron 3 of 11)	3113	NM_138495	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
6.47817	chr21	46256423	46256922	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-18628	NM_006936	6612	Hs.474005	NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin-like modifier 3	protein-coding
0.241089-27	chr17	14212553	14213052	+	0	NA	intron (NR_130138, intron 1 of 2)	intron (NR_130138, intron 1 of 2)	5745	NR_026880	84815	Hs.597458	NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
1.50581-10	chr12	29302537	29303036	+	0	NA	intron (NM_001271783, intron 1 of 11)	CpG	850	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
1.15771-6	chr22	38197911	38198410	+	0	NA	Intergenic	Intergenic	-2954	NM_005318	3005	Hs.745024	NM_005318	ENSG00000189060	H1F0	H10|H1FV	H1 histone family member 0	protein-coding
3.61511-7	chr4	141056556	141057055	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	18428	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
0	chr17	37788405	37788904	+	0	NA	intron (NM_181505, intron 4 of 6)	intron (NM_181505, intron 4 of 6)	3903	NM_181505	84152	Hs.286192	NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
6.16185-13	chr10	101690564	101691063	+	0	NA	promoter-TSS (NM_001318326)	promoter-TSS (NM_001318326)	-60	NM_001318326	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
0.0130484-18	chr7	552539	553038	+	0	NA	intron (NM_002607, intron 2 of 6)	intron (NM_002607, intron 2 of 6)	6693	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
4.85452-2	chr6	39692527	39693026	+	0	NA	intron (NM_145027, intron 1 of 22)	CpG	405	NM_145027	221458	Hs.588202	NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
0.0261362-28	chr3	196366321	196366820	+	0	NA	promoter-TSS (NM_198565)	promoter-TSS (NM_198565)	3	NM_198565	375387	Hs.702186	NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|UNQ3030	negative regulator of reactive oxygen species	protein-coding
1.39662-12	chr11	15671529	15672028	+	0	NA	intron (NM_001293172, intron 1 of 2)	CpG	6347	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
0.25028-16	chr21	30670651	30671150	+	0	NA	promoter-TSS (NM_001186)	promoter-TSS (NM_001186)	-216	NM_001186	571	Hs.154276	NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
2.24026-13	chr10	21822636	21823135	+	0	NA	promoter-TSS (NM_001195630)	promoter-TSS (NM_001195630)	-216	NM_001195628	8028	Hs.30385	NM_004641	ENSG00000078403	MLLT10	AF10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding
0.491485-22	chr7	2710444	2710943	+	0	NA	Intergenic	Intergenic	-8463	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
3.05395-8	chr5	10625345	10625844	+	0	NA	intron (NM_001164440, intron 2 of 3)	intron (NM_001164440, intron 2 of 3)	61159	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
0.00434512-40	chrX	105969086	105969585	+	0	NA	promoter-TSS (NM_194463)	promoter-TSS (NM_194463)	-559	NM_194463	79589	Hs.496542	NM_024539	ENSG00000133135	RNF128	GRAIL	ring finger protein 128, E3 ubiquitin protein ligase	protein-coding
2.88193-19	chr2	179314788	179315287	+	0	NA	exon (NM_001139517, exon 1 of 7)	exon (NM_001139517, exon 1 of 7)	318	NM_001139518	8575	Hs.570274	NM_003690	ENSG00000180228	PRKRA	DYT16|HSD14|PACT|RAX	protein activator of interferon induced protein kinase EIF2AK2	protein-coding
3.95774-16	chr2	161335130	161335629	+	0	NA	intron (NM_002897, intron 1 of 13)	intron (NM_002897, intron 1 of 13)	14939	NM_016836	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
9.20819-13	chr1	197744799	197745298	+	0	NA	promoter-TSS (NM_001195215)	promoter-TSS (NM_001195215)	-425	NM_001300858	163486	Hs.125056	NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
0.213631-26	chr9	93880589	93881088	+	0	NA	promoter-TSS (NR_135306)	promoter-TSS (NR_135306)	-506	NR_135306	100129347	Hs.522287	NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
12.9671	chr12	79472341	79472840	+	0	NA	intron (NM_001135806, intron 2 of 9)	intron (NM_001135806, intron 2 of 9)	33157	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
2.48721-11	chr11	10955287	10955786	+	0	NA	Intergenic	Intergenic	75772	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
5.33132-3	chr19	59025255	59025754	+	0	NA	exon (NM_001316980, exon 3 of 3)	exon (NM_001316980, exon 3 of 3)	-2072	NM_012254	10998	Hs.292177	NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
3.41989-2	chr2	154334021	154334520	+	0	NA	3' UTR (NM_019845, exon 1 of 1)	3' UTR (NM_019845, exon 1 of 1)	1052	NM_019845	56475	Hs.100890	NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
1.95861-6	chr10	129948153	129948652	+	0	NA	Intergenic	CpG	-23934	NM_002417	4288	Hs.80976	NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
3.20572-3	chr2	242254084	242254924	+	0	NA	promoter-TSS (NM_001321035)	promoter-TSS (NM_001321035)	-98	NM_001008491	4735	Hs.721234	NM_004404	ENSG00000168385	SEPT2	DIFF6|NEDD-5|NEDD5|Pnutl3|hNedd5	septin 2	protein-coding
0.0877392-8	chr18	3217817	3218316	+	0	NA	intron (NM_019856, intron 1 of 36)	intron (NM_019856, intron 1 of 36)	2040	NM_019856	8736	Hs.464469	NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
0.920515-22	chr15	89164259	89164758	+	0	NA	promoter-TSS (NM_022767)	promoter-TSS (NM_022767)	-19	NM_022767	64782	Hs.436102	NM_022767	ENSG00000181026	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
1.42065-5	chr7	43878367	43878866	+	0	NA	Intergenic	Intergenic	30529	NM_032014	64951	Hs.284286	NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
1.73277-16	chr17	55888116	55888615	+	0	NA	Intergenic	MIRb|SINE|MIR	39068	NM_016070	51649	Hs.5836	NM_016070	ENSG00000181610	MRPS23	CGI-138|HSPC329|MRP-S23	mitochondrial ribosomal protein S23	protein-coding
1.66853-5	chr16	81627042	81627541	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-17662	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
4.06714-3	chr20	18475740	18476239	+	0	NA	intron (NM_006606, intron 2 of 4)	SVA_D|Other|Other	1898	NM_006606	10741	Hs.69330	NM_006606	ENSG00000089050	RBBP9	BOG|RBBP10	RB binding protein 9, serine hydrolase	protein-coding
0.0217692-27	chr4	103680942	103681441	+	0	NA	intron (NM_005908, intron 1 of 16)	intron (NM_005908, intron 1 of 16)	960	NM_005908	4126	Hs.480415	NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
1.59267-2	chr5	3671409	3671908	+	0	NA	Intergenic	L2b|LINE|L2	75490	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
1.55523-8	chr11	35684289	35684788	+	0	NA	5' UTR (NM_017583, exon 1 of 5)	5' UTR (NM_017583, exon 1 of 5)	238	NM_017583	54765	Hs.192103	NM_017583	ENSG00000166326	TRIM44	AN3|DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
2.36572-6	chr9	32552095	32552594	+	0	NA	non-coding (NR_033991, exon 2 of 3)	non-coding (NR_033991, exon 2 of 3)	112	NR_102377	100129250	Hs.664395	NR_033991	ENSG00000235453	TOPORS-AS1	C9orf133	TOPORS antisense RNA 1	ncRNA
0.48177-44	chr11	61309597	61310096	+	0	NA	intron (NM_004200, intron 3 of 8)	intron (NM_004200, intron 3 of 8)	33574	NM_001145077	390205	Hs.441122	NM_001145077	ENSG00000204950	LRRC10B	-	leucine rich repeat containing 10B	protein-coding
0.127808-36	chr20	48150699	48151198	+	0	NA	intron (NM_000961, intron 5 of 9)	intron (NM_000961, intron 5 of 9)	33759	NM_000961	5740	Hs.302085	NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
1.26098-27	chr14	106146451	106146950	+	0	NA	Intergenic	CpG	-7556	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
2.06908-4	chr12	57081005	57081504	+	0	NA	non-coding (NR_104219, exon 1 of 8)	non-coding (NR_104219, exon 1 of 8)	527	NR_104219	10728	Hs.50425	NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
1.50581-9	chr17	29814579	29815078	+	0	NA	promoter-TSS (NM_001303542)	promoter-TSS (NM_001303542)	-191	NM_001346749	84440	Hs.406788	NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
20.4866-2	chr20	4201941	4202440	+	0	NA	exon (NM_000678, exon 2 of 2)	exon (NM_000678, exon 2 of 2)	27469	NM_000678	146	Hs.557	NM_000678	ENSG00000171873	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
0.496351-42	chr3	184054674	184055173	+	0	NA	promoter-TSS (NM_144635)	promoter-TSS (NM_144635)	-353	NM_144635	131408	Hs.591307	NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
9.87163-26	chr7	132006012	132006511	+	0	NA	intron (NM_020911, intron 3 of 31)	intron (NM_020911, intron 3 of 31)	60641	NR_134565	101928807	Hs.552131	NR_134565		LOC101928807	-	uncharacterized LOC101928807	ncRNA
6.77781-5	chr3	185280770	185281269	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10650	NM_139248	200879	Hs.68864	NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
2.18963-24	chr9	133375154	133375653	+	0	NA	intron (NM_000050, intron 15 of 15)	intron (NM_000050, intron 15 of 15)	55309	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
6.55608-3	chr3	124085031	124085530	+	0	NA	intron (NM_001024660, intron 10 of 59)	SVA_F|Other|Other	-7899	NR_106731	102464832		NR_106731	ENSG00000276656	MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
3.96856-12	chr2	7237358	7238033	+	0	NA	Intergenic	Intergenic	-19684	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
2.18245-5	chr4	141845970	141846469	+	0	NA	intron (NM_020724, intron 5 of 6)	intron (NM_020724, intron 5 of 6)	-168748	NM_015130	23158	Hs.480819	NM_015130	ENSG00000109436	TBC1D9	GRAMD9|MDR1	TBC1 domain family member 9	protein-coding
0.0612309-23	chr13	27933286	27933785	+	0	NA	Intergenic	Intergenic	-65146	NM_002097	2971	Hs.445977	NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
11.4752	chr9	88897469	88897968	+	0	NA	promoter-TSS (NM_030940)	promoter-TSS (NM_030940)	-228	NM_030940	81689	Hs.449291	NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|hIscA	iron-sulfur cluster assembly 1	protein-coding
0.979971-10	chr7	47499926	47500425	+	0	NA	intron (NM_022748, intron 4 of 30)	intron (NM_022748, intron 4 of 30)	121567	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
29.393-5	chr18	47931068	47931567	+	0	NA	Intergenic	LTR5B|LTR|ERVK	29925	NM_145060	220134	Hs.134726	NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
3.65523-9	chr4	54231977	54232476	+	0	NA	promoter-TSS (NM_152540)	promoter-TSS (NM_152540)	16	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
1.36677-23	chr2	98206778	98207277	+	0	NA	promoter-TSS (NM_025190)	promoter-TSS (NM_025190)	-599	NM_025190	57730	Hs.532921	NM_020970	ENSG00000196912	ANKRD36B	KIAA1641	ankyrin repeat domain 36B	protein-coding
25.7349	chr12	110094556	110095055	+	0	NA	Intergenic	Intergenic	-57382	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
0.414361-25	chr9	109494664	109495163	+	0	NA	Intergenic	Intergenic	116574	NR_104145	100996590	Hs.147110	NR_104145	ENSG00000234323	LINC01505	-	long intergenic non-protein coding RNA 1505	ncRNA
10.804	chr1	70953744	70954243	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	77092	NM_153742	1491	Hs.19904	NM_001902	ENSG00000116761	CTH	-	cystathionine gamma-lyase	protein-coding
2.00659-5	chr11	8376096	8376930	+	0	NA	Intergenic	Intergenic	-86331	NM_001270428	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
0.545314-10	chr4	140967051	140967550	+	0	NA	intron (NM_018717, intron 1 of 5)	MLT1I|LTR|ERVL-MaLR	107933	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
4.34152-6	chr20	61174706	61175205	+	0	NA	Intergenic	Intergenic	12836	NR_029676	406923		NR_029676	ENSG00000174407	MIR133A2	MIRN133A2|mir-133a-2	microRNA 133a-2	ncRNA
14.3771-3	chr14	35816764	35817263	+	0	NA	Intergenic	Intergenic	55490	NR_104110	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome subunit alpha 6	protein-coding
2.57275	chr8	104426418	104426917	+	0	NA	promoter-TSS (NM_015420)	promoter-TSS (NM_015420)	-275	NM_015420	25879	Hs.532265	NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
1.12946-4	chr15	63889553	63890052	+	0	NA	exon (NM_203373, exon 1 of 2)	exon (NM_203373, exon 1 of 2)	250	NM_203373	283807	Hs.631163	NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
0.172766-10	chr3	136444281	136444780	+	0	NA	intron (NM_005862, intron 1 of 33)	Kanga1|DNA|TcMar-Tc2	26715	NM_005862	10274	Hs.412586	NM_005862	ENSG00000118007	STAG1	SA1|SCC3A	stromal antigen 1	protein-coding
1.39662-29	chr11	65254962	65255461	+	0	NA	Intergenic	Intergenic	-9998	NR_002819	378938	Hs.621695	NR_002819		MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	ncRNA
13.439-6	chr11	21675465	21675964	+	0	NA	Intergenic	Intergenic	-539008	NM_001142649	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
1.17475-26	chr15	53670240	53670739	+	0	NA	Intergenic	Intergenic	162560	NR_102336	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
0.5061-5	chr15	83240342	83240841	+	0	NA	promoter-TSS (NM_001079533)	promoter-TSS (NM_001079533)	-18	NM_001288820	64506	Hs.459132	NM_030594	ENSG00000214575	CPEB1	CPE-BP1|CPEB|CPEB-1|h-CPEB|hCPEB-1	cytoplasmic polyadenylation element binding protein 1	protein-coding
1.07349-7	chr10	130122235	130122734	+	0	NA	Intergenic	Intergenic	38270	NR_120619	101927381	Hs.523342	NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
10.0656	chr10	102758811	102759310	+	0	NA	promoter-TSS (NM_001318100)	promoter-TSS (NM_001318100)	-511	NM_001318100	84445	Hs.523221	NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
15.5284-2	chr1	202137177	202137676	+	0	NA	non-coding (NR_002930, exon 1 of 22)	non-coding (NR_002930, exon 1 of 22)	247	NR_002930	148713	Hs.523870	NR_002930	ENSG00000243323	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase, receptor type V, pseudogene	pseudo
0.296531-14	chr6	16409877	16410376	+	0	NA	intron (NM_001128164, intron 6 of 7)	intron (NM_001128164, intron 6 of 7)	171315	NM_006877	2766	Hs.484741	NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
2.05512-24	chr22	32029724	32030223	+	0	NA	intron (NM_001326416, intron 3 of 10)	intron (NM_001326416, intron 3 of 10)	-3163	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
0.154727-4	chrX	131623202	131624128	+	0	NA	intron (NM_001170704, intron 1 of 8)	CpG	331	NM_001170704	55796	Hs.105134	NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
16.6959	chr14	100754588	100755087	+	0	NA	Intergenic	Intergenic	11143	NR_106822	102466730		NR_106822	ENSG00000100811	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
4.42493-12	chr3	142809298	142809797	+	0	NA	Intergenic	Intergenic	-29071	NM_004267	9435	Hs.8786	NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
12.2915-2	chr2	183695804	183696303	+	0	NA	Intergenic	Intergenic	35445	NM_001463	2487	Hs.128453	NM_001463	ENSG00000162998	FRZB	FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ	frizzled-related protein	protein-coding
4.64706-2	chr1	208416865	208417364	+	0	NA	5' UTR (NM_025179, exon 1 of 32)	5' UTR (NM_025179, exon 1 of 32)	551	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
0.0436481-22	chr3	193852635	193853134	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-1047	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
11.4509-2	chr18	48395410	48395909	+	0	NA	Intergenic	Intergenic	-9773	NM_001168335	4200	Hs.233119	NM_002396	ENSG00000082212	ME2	ODS1	malic enzyme 2	protein-coding
2.79014-25	chr5	83018087	83018586	+	0	NA	Intergenic	CpG	-1440	NM_001884	1404	Hs.2799	NM_001884	ENSG00000145681	HAPLN1	CRT1|CRTL1	hyaluronan and proteoglycan link protein 1	protein-coding
2.0412	chr5	36703289	36703788	+	0	NA	Intergenic	Intergenic	97081	NM_001289940	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
13.4199	chr5	160740979	160741478	+	0	NA	intron (NM_000813, intron 9 of 9)	intron (NM_000813, intron 9 of 9)	233902	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding
1.39662-8	chr2	78304708	78305207	+	0	NA	intron (NR_110288, intron 1 of 3)	intron (NR_110288, intron 1 of 3)	-10899	NR_110287	101927948	Hs.639404	NR_110287	ENSG00000229494	LOC101927948	-	uncharacterized LOC101927948	ncRNA
1.70053-20	chrX	131156336	131156835	+	0	NA	promoter-TSS (NM_016542)	promoter-TSS (NM_016542)	-660	NM_016542	51765	Hs.444247	NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
0.772745-6	chr17	36955759	36956258	+	0	NA	TTS (NM_017748)	TTS (NM_017748)	150	NM_003559	8396	Hs.260603	NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
0.296531-54	chr19	50432924	50433423	+	0	NA	promoter-TSS (NM_001290746)	promoter-TSS (NM_001290746)	-185	NM_016553	23636	Hs.574492	NM_012346	ENSG00000213024	NUP62	IBSN|SNDI|p62	nucleoporin 62	protein-coding
0.0524306-19	chr2	47418781	47419280	+	0	NA	TTS (NR_110208)	TTS (NR_110208)	-14955	NM_001305625	805	Hs.468442	NM_001743	ENSG00000143933	CALM2	CAMII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
5.48214-3	chr7	99541855	99542354	+	0	NA	Intergenic	LTR9|LTR|ERV1	-14861	NM_181538	349149	Hs.647524	NM_181538	ENSG00000176402	GJC3	CX29|CX30.2|CX31.3|GJE1	gap junction protein gamma 3	protein-coding
7.93174-6	chr21	45029454	45029953	+	0	NA	TTS (NR_106718)	TTS (NR_106718)	167	NR_106718	102464825		NR_106718	ENSG00000278433	MIR6070	hsa-mir-6070	microRNA 6070	ncRNA
0.254883-32	chr12	64392984	64393483	+	0	NA	intron (NM_020762, intron 3 of 21)	L2b|LINE|L2	154700	NM_001346201	57522	Hs.210751	NM_020762	ENSG00000196935	SRGAP1	ARHGAP13|NMTC2	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
1.92465-9	chr4	186391687	186392186	+	0	NA	promoter-TSS (NR_133944)	promoter-TSS (NR_133944)	-649	NR_133944	105377590	Hs.563183	NR_133944	ENSG00000249679	LOC105377590	-	uncharacterized LOC105377590	ncRNA
8.53872-3	chr16	12485698	12486197	+	0	NA	intron (NM_032167, intron 16 of 20)	intron (NM_032167, intron 16 of 20)	-328231	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
3.77786-7	chr7	2573074	2573573	+	0	NA	Intergenic	SVA_E|Other|Other	6615	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
0.123337-21	chr4	123078430	123078929	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-13079	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
0.438316-24	chr3	179039655	179040154	+	0	NA	promoter-TSS (NM_001303425)	promoter-TSS (NM_001303425)	-875	NM_001303425	51193	Hs.632578	NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
0.0877392-5	chr10	676623	677122	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	10846	NR_049884	100847086		NR_049884	ENSG00000263511	MIR5699	mir-5699	microRNA 5699	ncRNA
1.51195-18	chr11	17434155	17434654	+	0	NA	intron (NM_001287174, intron 20 of 38)	L2c|LINE|L2	-23526	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
1.39662-9	chr10	12376171	12376670	+	0	NA	Intergenic	Intergenic	-15122	NM_153498	57118	Hs.600547	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
0.0261362-13	chr19	29802194	29802693	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-98307	NM_006003	7386	Hs.743307	NM_006003	ENSG00000169021	UQCRFS1	RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
1.48742-8	chr17	77770847	77771346	+	0	NA	promoter-TSS (NM_020649)	promoter-TSS (NM_020649)	-181	NM_020649	57332	Hs.387258	NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
18.8273-5	chr1	40782137	40782636	+	0	NA	intron (NM_001852, intron 1 of 31)	CpG	553	NM_001852	1298	Hs.418012	NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
0.400052-37	chr5	56205847	56206346	+	0	NA	non-coding (NR_136557, exon 1 of 5)	non-coding (NR_136557, exon 1 of 5)	207	NM_001323018	133383	Hs.85950	NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
0.259491-3	chr14	34419564	34420063	+	0	NA	exon (NM_022073, exon 1 of 5)	exon (NM_022073, exon 1 of 5)	219	NM_001308103	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
1.31944-18	chr22	16192718	16193217	+	0	NA	promoter-TSS (NR_122113)	promoter-TSS (NR_122113)	42	NR_122113	503637	Hs.744284	NR_122113	ENSG00000206195	DUXAP8	-	double homeobox A pseudogene 8	pseudo
2.16811-9	chr5	139944044	139944543	+	0	NA	promoter-TSS (NM_133173)	promoter-TSS (NM_133173)	-104	NM_133172	10307	Hs.529449	NM_006051	ENSG00000113108	APBB3	FE65L2|SRA	amyloid beta precursor protein binding family B member 3	protein-coding
0.501223-4	chr3	192444725	192445224	+	0	NA	exon (NM_004113, exon 2 of 6)	exon (NM_004113, exon 2 of 6)	414	NM_004113	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
3.24222-9	chr2	27545707	27546206	+	0	NA	promoter-TSS (NM_002437)	promoter-TSS (NM_002437)	13	NM_002437	4358	Hs.75659	NM_002437	ENSG00000115204	MPV17	MTDPS6|SYM1	MPV17, mitochondrial inner membrane protein	protein-coding
1.09579-19	chr5	153784632	153785131	+	0	NA	intron (NM_198321, intron 8 of 11)	CpG	40501	NR_037897	386627	Hs.652021	NR_037897		SAP30L-AS1	GALNT10-AS1	SAP30L antisense RNA 1 (head to head)	ncRNA
3.87216-8	chr11	92711813	92712312	+	0	NA	intron (NM_005959, intron 1 of 1)	intron (NM_005959, intron 1 of 1)	9273	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
50.4144	chr8	102614029	102614528	+	0	NA	intron (NM_001330593, intron 8 of 15)	L1PA8|LINE|L1	109610	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding
0.0568285-15	chr5	42699006	42699505	+	0	NA	intron (NM_001242403, intron 5 of 9)	intron (NM_001242403, intron 5 of 9)	-57665	NM_001134848	100129792	Hs.745017	NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
2.35824-4	chr11	96123305	96123804	+	0	NA	promoter-TSS (NM_024725)	promoter-TSS (NM_024725)	396	NM_001261833	8690	Hs.105940	NM_003772	ENSG00000183340	JRKL	HHMJG	JRK-like	protein-coding
9.62574-4	chr11	3418822	3419321	+	0	NA	intron (NR_024248, intron 3 of 10)	SVA_D|Other|Other	-5926	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
0.996329-30	chr16	29827085	29827584	+	0	NA	promoter-TSS (NM_024516)	promoter-TSS (NM_024516)	-194	NM_024516	79447	Hs.702841	NM_024516	ENSG00000280789	PAGR1	C16orf53|GAS|PA1	PAXIP1 associated glutamate rich protein 1	protein-coding
0.0348833-2	chr1	47133800	47134299	+	0	NA	promoter-TSS (NM_001042546)	promoter-TSS (NM_001042546)	50	NM_022745	64756	Hs.100874	NM_022745	ENSG00000123472	ATPAF1	ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding
4.46117-15	chr13	27989963	27990462	+	0	NA	Intergenic	Intergenic	-8469	NM_002097	2971	Hs.445977	NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
3.41035-21	chr2	88315287	88315786	+	0	NA	Intergenic	AluJr|SINE|Alu	-30227	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
16.5956-2	chr7	92173727	92174226	+	0	NA	Intergenic	SVA_B|Other|Other	15889	NM_032120	84060	Hs.21590	NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304|MGC16142	RNA binding motif protein 48	protein-coding
6.05548-6	chr5	179401155	179401654	+	0	NA	intron (NM_018434, intron 5 of 8)	intron (NM_018434, intron 5 of 8)	40993	NR_029885	442908		NR_029885	ENSG00000198995	MIR340	MIRN340|hsa-mir-340|mir-340	microRNA 340	ncRNA
1.44481-12	chr17	73309775	73310274	+	0	NA	Intergenic	Intergenic	-24494	NM_021734	60386	Hs.514470	NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
0.685421-8	chr20	48912222	48912721	+	0	NA	intron (NR_034124, intron 1 of 4)	intron (NR_034124, intron 1 of 4)	3214	NR_034124	284751	Hs.282325	NM_001025463	ENSG00000203999	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
30.1412	chr3	160703790	160704289	+	0	NA	intron (NM_001317911, intron 2 of 3)	intron (NM_001317911, intron 2 of 3)	115653	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
0.172766-11	chrX	119021979	119022478	+	0	NA	Intergenic	Intergenic	-7708	NM_001008534	158798	Hs.592245	NM_178813	ENSG00000186471	AKAP14	AKAP28|PRKA14	A-kinase anchoring protein 14	protein-coding
1.51811-3	chr11	105481101	105481600	+	0	NA	promoter-TSS (NM_001112812)	promoter-TSS (NM_001112812)	-61	NR_046356	2893	Hs.503743	NM_000829	ENSG00000152578	GRIA4	GLUR4|GLUR4C|GLURD|GluA4	glutamate ionotropic receptor AMPA type subunit 4	protein-coding
1.18045-11	chr1	155176631	155177130	+	0	NA	intron (NM_001252608, intron 1 of 20)	intron (NM_001252608, intron 1 of 20)	892	NM_001252607	7059	Hs.169875	NM_007112	ENSG00000169231	THBS3	TSP3	thrombospondin 3	protein-coding
0.462403-16	chr12	19725748	19726247	+	0	NA	Intergenic	L1PREC2|LINE|L1	132482	NM_001267043	121536	Hs.126497	NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
4.00117-3	chr5	14582225	14582724	+	0	NA	intron (NM_019018, intron 1 of 7)	CpG	583	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding
2.62013-4	chr14	38068209	38068708	+	0	NA	intron (NM_001310135, intron 1 of 32)	CpG	4054	NM_001310135	319089	Hs.659936	NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
0.0305075-30	chr3	48754478	48754977	+	0	NA	promoter-TSS (NM_001190317)	promoter-TSS (NM_001190317)	-16	NM_001146179	51447	Hs.595983	NM_016291	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
0.070049-38	chr16	57656118	57656617	+	0	NA	intron (NM_005682, intron 1 of 14)	intron (NM_005682, intron 1 of 14)	2457	NM_001145770	9289	Hs.513633	NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
0.0656377-6	chr13	97950943	97951442	+	0	NA	intron (NM_001306070, intron 2 of 7)	intron (NM_001306070, intron 2 of 7)	76642	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
11.0791	chr12	125087719	125088218	+	0	NA	Intergenic	Intergenic	-35958	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
2.02732-7	chr1	17338187	17338686	+	0	NA	promoter-TSS (NM_022089)	promoter-TSS (NM_022089)	31	NM_001141974	23400	Hs.128866	NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9	ATPase 13A2	protein-coding
0.296531-117	chr9_gl000199_random	66429	66928	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
6.42065-3	chr12	3313294	3313793	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	127022	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
0.400052-27	chr3	129612470	129612969	+	0	NA	promoter-TSS (NM_001128224)	promoter-TSS (NM_001128224)	5	NR_037893	100507032	Hs.529562	NR_037893	ENSG00000271270	TMCC1-AS1	-	TMCC1 antisense RNA 1 (head to head)	ncRNA
0.840728-8	chr7	14778667	14779166	+	0	NA	intron (NM_145695, intron 3 of 23)	MER61D|LTR|ERV1	102159	NM_145695	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
5.59091-4	chr10	104177801	104178300	+	0	NA	intron (NM_002779, intron 1 of 16)	intron (NM_002779, intron 1 of 16)	851	NM_002779	5662	Hs.154658	NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
0.428718-28	chr5	173472391	173472890	+	0	NA	promoter-TSS (NM_015980)	promoter-TSS (NM_015980)	33	NM_015980	51617	Hs.559412	NM_015980	ENSG00000170091	HMP19	-	HMP19 protein	protein-coding
59.1009	chr8	62544271	62544770	+	0	NA	intron (NM_001164752, intron 13 of 13)	7SK|RNA|RNA	57888	NM_001164753	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
1.41463-9	chr19	33072049	33072548	+	0	NA	intron (NM_004708, intron 1 of 5)	CpG	204	NM_004708	9141	Hs.443831	NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
1.02373-19	chr8	127513852	127514351	+	0	NA	Intergenic	Intergenic	56610	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding
6.30784-13	chr20	8601600	8602099	+	0	NA	intron (NM_182734, intron 3 of 32)	intron (NM_182734, intron 3 of 32)	372498	NR_046809	100874337	Hs.662218	NR_046809		PLCB1-IT1	-	PLCB1 intronic transcript 1	ncRNA
0.154727-5	chr5	16741002	16741501	+	0	NA	intron (NM_012334, intron 19 of 40)	intron (NM_012334, intron 19 of 40)	-124084	NM_001034850	54463	Hs.481704	NM_019000	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134 member B	protein-coding
5.30178-3	chr9	15349969	15350468	+	0	NA	Intergenic	Intergenic	-42860	NM_152574	158219	Hs.563630	NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
0.443122-10	chr1	4004274	4004773	+	0	NA	intron (NR_040065, intron 2 of 2)	intron (NR_040065, intron 2 of 2)	3851	NR_040065	728716	Hs.668359	NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
1.77832-2	chr9	100000435	100000934	+	0	NA	promoter-TSS (NR_036526)	promoter-TSS (NR_036526)	-24	NR_036529	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
1.39662-6	chr8	427386	427885	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	67210	NM_001256113	157695	Hs.289293	NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
0.979971-12	chr7	130418389	130418888	+	0	NA	exon (NM_138693, exon 1 of 1)	exon (NM_138693, exon 1 of 1)	222	NM_138693	136259	Hs.125240	NM_138693	ENSG00000266265	KLF14	BTEB5	Kruppel like factor 14	protein-coding
7.74691-14	chr4	37688046	37688545	+	0	NA	promoter-TSS (NM_001085399)	promoter-TSS (NM_001085399)	-296	NM_001085399	768211	Hs.283378	NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
0.145735-6	chr11	69460337	69460836	+	0	NA	intron (NM_053056, intron 3 of 4)	intron (NM_053056, intron 3 of 4)	4713	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
0.757207-4	chr2	242786192	242786691	+	0	NA	Intergenic	CpG	14617	NM_005018	5133	Hs.158297	NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
15.6864	chr4	133164493	133164992	+	0	NA	Intergenic	L1PA15|LINE|L1	-347502	NR_126401	104355285	Hs.123483	NR_126401	ENSG00000251398	LINC01256	TCONS_l2_00021715	long intergenic non-protein coding RNA 1256	ncRNA
0.338583-25	chr5	35370417	35370916	+	0	NA	Intergenic	Intergenic	-139975	NM_000949	5618	Hs.368587	NM_000949	ENSG00000113494	PRLR	HPRL|MFAB|hPRLrI	prolactin receptor	protein-coding
0.79355-9	chr12	131939153	131939652	+	0	NA	Intergenic	Intergenic	107387	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
0.0392635-23	chr8	145063997	145064496	+	0	NA	promoter-TSS (NM_000837)	promoter-TSS (NM_000837)	20	NM_001009184	2907	Hs.594634	NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
26.5365	chr21	30476701	30477200	+	0	NA	intron (NM_001286634, intron 5 of 7)	intron (NM_001286634, intron 5 of 7)	12375	NM_001286619	56911	Hs.222802	NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
8.21023-3	chr1	144008044	144008543	+	0	NA	Intergenic	Intergenic	-93446	NR_144320	728833	Hs.535577	NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
9.0309-5	chr11	71651602	71652101	+	0	NA	intron (NR_024147, intron 1 of 7)	L2c|LINE|L2	12083	NR_024148	55298	Hs.368554	NM_018320	ENSG00000137522	RNF121	-	ring finger protein 121	protein-coding
0.241089-17	chr12	123465222	123465721	+	0	NA	TTS (NM_001304833)	TTS (NM_001304833)	864	NM_001002252	51329	Hs.103561	NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
1.70696-18	chr1	233086215	233086714	+	0	NA	promoter-TSS (NR_138027)	promoter-TSS (NR_138027)	-124	NR_138027	84284	Hs.642715	NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase	nucleoside-triphosphatase, cancer-related	protein-coding
0.136762-5	chr3	20227530	20228029	+	0	NA	promoter-TSS (NM_001012410)	promoter-TSS (NM_001012410)	-54	NM_001199252	151648	Hs.105153	NM_138484	ENSG00000129810	SGO1	CAID|NY-BR-85|SGO|SGOL1	shugoshin 1	protein-coding
0.447935-11	chr7	89783455	89783954	+	0	NA	promoter-TSS (NM_012449)	promoter-TSS (NM_012449)	15	NM_012449	26872	Hs.61635	NM_012449	ENSG00000164647	STEAP1	PRSS24|STEAP	STEAP family member 1	protein-coding
1.92465-3	chr10	100069128	100069627	+	0	NA	Intergenic	MIR3|SINE|MIR	-41370	NM_032211	84171	Hs.306814	NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
22.4185	chr6	51017513	51018012	+	0	NA	Intergenic	Intergenic	231323	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
3.34419-2	chr3	165778481	165778980	+	0	NA	Intergenic	L1M1|LINE|L1	-223470	NR_137636	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
5.55955	chr1	175560220	175560719	+	0	NA	intron (NM_001328635, intron 1 of 22)	intron (NM_001328635, intron 1 of 22)	152283	NM_003285	7143	Hs.659864	NM_003285	ENSG00000116147	TNR	TN-R	tenascin R	protein-coding
30.0612-2	chr5	60018161	60018660	+	0	NA	Intergenic	L1PA15|LINE|L1	-22417	NM_001145208	55789	Hs.482233	NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
12.0343-2	chr13	81690590	81691089	+	0	NA	Intergenic	Intergenic	98313	NR_125770	103724386	Hs.539622	NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
1.00727-13	chr17	21183230	21183729	+	0	NA	Intergenic	Intergenic	-4489	NM_001316332	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
0.457575-7	chr5	173650203	173650702	+	0	NA	Intergenic	Intergenic	-112905	NR_125806	101928176	Hs.436014	NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
1.93142-5	chr1	52521636	52522135	+	0	NA	promoter-TSS (NM_015913)	promoter-TSS (NM_015913)	28	NM_001136497	91408	Hs.429839	NM_152265	ENSG00000134717	BTF3L4	-	basic transcription factor 3 like 4	protein-coding
0.123337-41	chr5	96397810	96398309	+	0	NA	Intergenic	Intergenic	80461	NM_153234	167410	Hs.656702	NM_153234	ENSG00000145721	LIX1	C5orf11|Lft	limb and CNS expressed 1	protein-coding
13.4008	chr8	97591023	97591522	+	0	NA	intron (NM_002998, intron 1 of 4)	intron (NM_002998, intron 1 of 4)	-66183	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
0.34328-9	chr2	18568837	18569336	+	0	NA	Intergenic	Intergenic	172873	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
13.7161-2	chr1	221882290	221882789	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	27703	NR_111939	11221	Hs.497822	NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
0.685421-16	chr12	49454339	49454838	+	0	NA	Intergenic	CpG	-5481	NM_003482	8085	Hs.731384	NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
13.7779	chr17	62406357	62406856	+	0	NA	intron (NM_000442, intron 1 of 1)	L2c|LINE|L2	477	NM_000442	5175	Hs.376675	NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
19.5861-9	chr12	80377595	80378094	+	0	NA	Intergenic	L2a|LINE|L2	-48609	NM_001244990	4659	Hs.49582	NM_002480	ENSG00000058272	PPP1R12A	M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
1.0513-6	chr4	91049493	91049992	+	0	NA	intron (NM_001145065, intron 1 of 10)	intron (NM_001145065, intron 1 of 10)	1058	NM_001145065	401145	Hs.654735	NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding
10.3574	chr2	57926151	57926650	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-208386	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
25.1856-2	chr10	117943722	117944221	+	0	NA	intron (NM_001145453, intron 4 of 9)	intron (NM_001145453, intron 4 of 9)	87848	NM_145793	2674	Hs.388347	NM_005264	ENSG00000151892	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
2.17527-8	chr16	75267978	75268477	+	0	NA	intron (NM_001170715, intron 5 of 6)	intron (NM_001170715, intron 5 of 6)	4753	NM_001170721	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
33.3255-2	chr13	79353742	79354241	+	0	NA	Intergenic	Intergenic	60194	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
1.61781-3	chr3	120176576	120177075	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-6907	NM_007085	11167	Hs.269512	NM_007085	ENSG00000163430	FSTL1	FRP|FSL1|MIR198|OCC-1|OCC1|tsc36	follistatin like 1	protein-coding
1.17475-20	chr12	69459520	69460019	+	0	NA	Intergenic	Intergenic	-102749	NM_001874	1368	Hs.654387	NM_001874	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding
0.540393-56	chr4	187864020	187864519	+	0	NA	Intergenic	Intergenic	-219282	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
3.74688-15	chr4	86747380	86747879	+	0	NA	intron (NM_001042669, intron 1 of 7)	intron (NM_001042669, intron 1 of 7)	-1417	NM_001287805	83478	Hs.444229	NM_031305	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
0.695604-12	chr7	25990626	25991125	+	0	NA	Intergenic	CpG	-1269	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
6.7162-2	chr8	124253334	124253833	+	0	NA	promoter-TSS (NM_032847)	promoter-TSS (NM_032847)	55	NM_032847	84933	Hs.707401	NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
0.670192-11	chr13	114750487	114750986	+	0	NA	intron (NM_007368, intron 23 of 23)	intron (NM_007368, intron 23 of 23)	92718	NM_001320822	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
0.366845-26	chr2	228749059	228749558	+	0	NA	intron (NM_001330004, intron 2 of 13)	L1MDb|LINE|L1	13216	NM_001330004	164781	Hs.424594	NM_178821	ENSG00000123977	DAW1	ODA16|WDR69	dynein assembly factor with WD repeats 1	protein-coding
6.14394-4	chr19	52554964	52555463	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-2836	NM_014650	9668	Hs.655934	NM_014650	ENSG00000256087	ZNF432	-	zinc finger protein 432	protein-coding
15.0585-2	chr8	139636865	139637364	+	0	NA	intron (NM_152888, intron 51 of 64)	L2b|LINE|L2	-128049	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135 member B	protein-coding
1.88425-15	chr3	9850114	9850613	+	0	NA	intron (NM_001198793, intron 4 of 11)	intron (NM_001198793, intron 4 of 11)	-1281	NR_037162	26140	Hs.726435	NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
1.2436-11	chr17	7740044	7740543	+	0	NA	Intergenic	Intergenic	-2942	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine demethylase 6B	protein-coding
0.127808-16	chr19	48018328	48018827	+	0	NA	promoter-TSS (NR_038457)	promoter-TSS (NR_038457)	-62	NR_038456	8775	Hs.126938	NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
4.05607-10	chr2	100938697	100939196	+	0	NA	5' UTR (NM_198461, exon 1 of 12)	5' UTR (NM_198461, exon 1 of 12)	249	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
4.25969-2	chr14	95757448	95757947	+	0	NA	intron (NM_024734, intron 1 of 12)	intron (NM_024734, intron 1 of 12)	28548	NM_024734	79789	Hs.301478	NM_024734	ENSG00000165959	CLMN	-	calmin	protein-coding
3.67543-2	chr2	127838100	127838599	+	0	NA	intron (NM_139351, intron 1 of 12)	intron (NM_139351, intron 1 of 12)	1292	NM_001320634	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19.8297-7	chrX	49123005	49123504	+	0	NA	Intergenic	Intergenic	-1966	NM_001114377	50943	Hs.247700	NM_014009	ENSG00000049768	FOXP3	AIID|DIETER|IPEX|JM2|PIDX|XPID	forkhead box P3	protein-coding
0.136762-4	chr5	114879426	114879925	+	0	NA	intron (NM_020177, intron 1 of 2)	intron (NM_020177, intron 1 of 2)	916	NM_020177	56929	Hs.47367	NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
9.82967-13	chr5	9932900	9933399	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-29213	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LINC02112	-	long intergenic non-protein coding RNA 2112	ncRNA
8.26814-25	chrX	96148561	96149060	+	0	NA	intron (NM_007309, intron 5 of 26)	L4|LINE|RTE	9903	NM_013347	29935	Hs.659349	NM_013347	ENSG00000204086	RPA4	HSU24186	replication protein A4	protein-coding
0.15923-33	chr5	35863279	35863778	+	0	NA	intron (NM_002185, intron 2 of 7)	intron (NM_002185, intron 2 of 7)	6551	NM_002185	3575	Hs.591742	NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL7RA|ILRA	interleukin 7 receptor	protein-coding
10.6098	chr22	18799769	18800268	+	0	NA	Intergenic	Intergenic	-20544	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
1.54282-9	chr2	121223567	121224066	+	0	NA	non-coding (NR_027181, exon 1 of 1)	non-coding (NR_027181, exon 1 of 1)	109	NR_027181	84931	Hs.334519	NM_032845	ENSG00000280409	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
37.3993	chr7	142512715	142513214	+	0	NA	Intergenic	Intergenic	34207	NR_001296	154754	Hs.449281	NR_001296		PRSS3P2	T6|TRY6	protease, serine 3 pseudogene 2	pseudo
0.163737-31	chr12	56013357	56013856	+	0	NA	Intergenic	Intergenic	-17070	NM_206899	121130	Hs.554551	NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
24.2597-3	chr5	65618893	65619392	+	0	NA	Intergenic	Intergenic	178479	NM_139168	140890	Hs.49367	NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
8.66461-12	chr14	106038554	106039053	+	0	NA	Intergenic	Intergenic	40611	NR_135205	105370697	Hs.148580	NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
49.6658	chr14	62396632	62397131	+	0	NA	Intergenic	Intergenic	-65660	NM_031914	83851	Hs.404139	NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r|yt14r	synaptotagmin 16	protein-coding
2.88193-2	chr1	95468085	95468584	+	0	NA	intron (NR_131032, intron 2 of 2)	intron (NR_131032, intron 2 of 2)	-58818	NR_132786	101928098	Hs.730090	NR_132786	ENSG00000230427	LOC101928098	-	uncharacterized LOC101928098	ncRNA
1.16339-7	chr13	93896490	93896989	+	0	NA	intron (NM_005708, intron 1 of 8)	L1PBa|LINE|L1	17678	NM_005708	10082	Hs.444329	NM_005708	ENSG00000183098	GPC6	OMIMD1	glypican 6	protein-coding
2.44125-14	chr4	6979936	6980435	+	0	NA	intron (NM_001330638, intron 2 of 12)	SVA_D|Other|Other	-8704	NM_001113363	57533	Hs.518611	NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
0.757207-3	chr1	215855479	215855978	+	0	NA	intron (NM_206933, intron 61 of 71)	intron (NM_206933, intron 61 of 71)	115006	NM_001319295	51133	Hs.335139	NM_016121	ENSG00000136636	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
9.06578-7	chr7	39429292	39429791	+	0	NA	intron (NM_001166018, intron 6 of 10)	intron (NM_001166018, intron 6 of 10)	16404	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
0.0261362-57	chr9	35284542	35285041	+	0	NA	intron (NM_001330653, intron 7 of 39)	intron (NM_001330653, intron 7 of 39)	-121961	NR_003581	158381	Hs.575661	NR_003581	ENSG00000179766	ATP8B5P	FetA	ATPase phospholipid transporting 8B5, pseudogene	pseudo
0.0305075-11	chr9	37747035	37747534	+	0	NA	TTS (NM_014907)	TTS (NM_014907)	-6516	NM_144964	158234	Hs.655614	NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
0.118872-35	chr5	107857541	107858040	+	0	NA	Intergenic	Intergenic	-139991	NM_001163315	64839	Hs.657225	NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
2.04815-4	chr12	98520324	98520823	+	0	NA	Intergenic	Intergenic	-131347	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA
0.665127-8	chr1	8585842	8586341	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-31118	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
1.92465-6	chr4	183064887	183065502	+	0	NA	intron (NR_125905, intron 2 of 4)	CpG-20284	474	NR_027107	90768	Hs.175465	NR_027107		LOC90768	-	uncharacterized LOC90768	ncRNA
0.48177-9	chr14	104625036	104625535	+	0	NA	intron (NM_015656, intron 4 of 14)	CpG	20225	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
2.96709-5	chr8	91697023	91697522	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-39139	NM_001146273	169200	Hs.567759	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
0.305841	chr1	236080642	236081141	+	0	NA	Intergenic	Intergenic	-33883	NR_102436	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
1.54902-2	chr10	69595689	69596188	+	0	NA	intron (NM_201262, intron 1 of 2)	L1PA8|LINE|L1	1999	NM_021800	56521	Hs.260720	NM_021800	ENSG00000108176	DNAJC12	JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
0.540393-17	chr1	225117238	225117737	+	0	NA	5' UTR (NM_001145154, exon 1 of 11)	5' UTR (NM_001145154, exon 1 of 11)	124	NM_144989	127602	Hs.133977	NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein axonemal heavy chain 14	protein-coding
17.0774-8	chr6	108145141	108145640	+	0	NA	5' UTR (NM_001286408, exon 1 of 7)	5' UTR (NM_001286408, exon 1 of 7)	131	NM_198081	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
0.990869-7	chr17	73401512	73402011	+	0	NA	promoter-TSS (NM_203506)	promoter-TSS (NM_203506)	28	NM_002086	2885	Hs.444356	NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
2.47952-2	chr5	321111	321610	+	0	NA	intron (NM_020731, intron 1 of 11)	CpG	17069	NM_020731	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
1.39662-27	chr1	4005269	4005768	+	0	NA	intron (NR_040065, intron 2 of 2)	intron (NR_040065, intron 2 of 2)	4846	NR_040065	728716	Hs.668359	NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
6.16185-3	chr7	125156200	125156699	+	0	NA	Intergenic	Intergenic	-252104	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
0.925886-2	chr4	170407202	170407701	+	0	NA	intron (NM_001199399, intron 20 of 32)	intron (NM_001199399, intron 20 of 32)	126327	NM_001199400	4750	Hs.481181	NM_012224	ENSG00000137601	NEK1	NY-REN-55|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
4.25969-9	chr7	37079855	37080354	+	0	NA	intron (NM_001206482, intron 15 of 21)	intron (NM_001206482, intron 15 of 21)	42703	NR_104120	100861514	Hs.627775	NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
0.846002-8	chr15	81558132	81558631	+	0	NA	intron (NM_172217, intron 3 of 17)	intron (NM_172217, intron 3 of 17)	-30873	NM_004513	3603	Hs.459095	NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
10.4721-3	chr1	148000128	148000627	+	0	NA	intron (NM_001037501, intron 18 of 19)	CpG	6231	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
1.43271-2	chr11	6640295	6640794	+	0	NA	intron (NM_000391, intron 1 of 12)	intron (NM_000391, intron 1 of 12)	148	NM_000391	1200	Hs.523454	NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
1.41463-23	chr22	20286726	20287225	+	0	NA	Intergenic	CpG	20653	NM_033257	85359	Hs.410965	NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6-like	protein-coding
0.231917	chr14	39813468	39813967	+	0	NA	intron (NM_005930, intron 20 of 23)	intron (NM_005930, intron 20 of 23)	77389	NM_001247989	4253	Hs.287694	NM_005930	ENSG00000150526	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6	melanoma inhibitory activity 2	protein-coding
3.08919-5	chr19	386664	387163	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10900	NM_016585	51298	Hs.250002	NM_016585	ENSG00000105549	THEG	CT56|THEG1	theg spermatid protein	protein-coding
10.2503	chr9	108556900	108557399	+	0	NA	Intergenic	SATR1|Satellite|Satellite	100343	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
0.76756-18	chr5	179051406	179051905	+	0	NA	promoter-TSS (NM_005520)	promoter-TSS (NM_005520)	-933	NM_005520	3187	Hs.604001	NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|hnRNPH	heterogeneous nuclear ribonucleoprotein H1 (H)	protein-coding
0.218195	chr5	175964161	175964660	+	0	NA	promoter-TSS (NM_014901)	promoter-TSS (NM_014901)	11	NM_014901	22838	Hs.434888	NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
7.35182-13	chr21	35173867	35174366	+	0	NA	intron (NM_001331012, intron 19 of 28)	intron (NM_001331012, intron 19 of 28)	114042	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5O	ATPO|HMC08D05|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
1.16339-19	chrX	39018048	39018547	+	0	NA	Intergenic	Intergenic	168319	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
0.428718-3	chr11	45129752	45130251	+	0	NA	intron (NR_046338, intron 2 of 7)	intron (NR_046338, intron 2 of 7)	14437	NR_046338	56981	Hs.178715	NM_020229	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
0.195421-17	chr19	50183629	50184128	+	0	NA	intron (NM_001536, intron 3 of 10)	intron (NM_001536, intron 3 of 10)	-1496	NR_049811	100847074		NR_049811	ENSG00000274306	MIR5088	mir-5088	microRNA 5088	ncRNA
4.22508	chr1	80893502	80894001	+	0	NA	Intergenic	L4|LINE|RTE	-107689	NR_125940	101927412	Hs.171273	NR_125940	ENSG00000234184	LINC01781	-	long intergenic non-protein coding RNA 1781	ncRNA
0.254883-46	chr2	10592378	10592877	+	0	NA	intron (NR_110597, intron 3 of 4)	MARNA|DNA|TcMar-Mariner	2773	NR_110597	101929715	Hs.634550	NR_110597		LOC101929715	-	uncharacterized LOC101929715	ncRNA
0.0612309-34	chr3	48957148	48957647	+	0	NA	promoter-TSS (NM_001123040)	promoter-TSS (NM_001123040)	-579	NM_001123040	646450	Hs.720727	NM_001123040	ENSG00000221883	ARIH2OS	C3orf71	ariadne homolog 2 opposite strand	protein-coding
3.38187-5	chrX	13665672	13666171	+	0	NA	Intergenic	Intergenic	-5304	NM_001297563	170082	Hs.222855	NM_152634	ENSG00000176896	TCEANC	-	transcription elongation factor A N-terminal and central domain containing	protein-coding
16.6354	chr5	112531329	112531828	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	99034	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
1.29011-16	chr20	49211166	49211665	+	0	NA	intron (NR_110890, intron 16 of 21)	intron (NR_110890, intron 16 of 21)	9092	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
2.66001	chr8	18870923	18871422	+	0	NA	promoter-TSS (NM_015310)	promoter-TSS (NM_015310)	24	NM_015310	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
1.73277-17	chr11	81355253	81355752	+	0	NA	Intergenic	Intergenic	246376	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
0.584886-14	chr17	63584413	63584912	+	0	NA	Intergenic	Intergenic	-26922	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
20.2045-5	chr11	20325110	20325609	+	0	NA	Intergenic	Intergenic	-59872	NM_006410	10553	Hs.90753	NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
22.8651	chr13	100563721	100564220	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	45449	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA
1.33122-15	chr17	62037275	62037774	+	0	NA	intron (NM_000334, intron 11 of 23)	intron (NM_000334, intron 11 of 23)	12754	NM_000334	6329	Hs.46038	NM_000334	ENSG00000007314	SCN4A	CMS16|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
0.00869459-7	chr7	151012119	151012618	+	0	NA	Intergenic	Intergenic	-26479	NM_016118	51667	Hs.647082	NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
5.85027-13	chr9	114393492	114394348	+	0	NA	exon (NM_001015882, exon 1 of 4)	exon (NM_001015882, exon 1 of 4)	288	NM_004125	552891	Hs.534196	NM_004125	ENSG00000244115	DNAJC25-GNG10	-	DNAJC25-GNG10 readthrough	protein-coding
0.296531-100	chr1	41047954	41048453	+	0	NA	Intergenic	Intergenic	50970	NM_152373	127396	Hs.524767	NM_152373	ENSG00000117010	ZNF684	-	zinc finger protein 684	protein-coding
0.310503-32	chr5	139167022	139167521	+	0	NA	Intergenic	CpG	-8135	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
0.2365-16	chr6	150329618	150330117	+	0	NA	Intergenic	Intergenic	-3587	NR_024045	646024	Hs.560537	NR_024045	ENSG00000218358	RAET1K	-	retinoic acid early transcript 1K pseudogene	pseudo
4.86782-12	chrX	138286991	138287490	+	0	NA	promoter-TSS (NM_001139501)	promoter-TSS (NM_001139501)	-55	NM_001139501	2258	Hs.6540	NM_004114	ENSG00000129682	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
4.04504-3	chr10	135227400	135227899	+	0	NA	intron (NM_138384, intron 9 of 10)	SVA_D|Other|Other	10472	NM_001012508	503542	Hs.64968	NM_001012508	ENSG00000203772	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein homolog (zebrafish)	protein-coding
4.98941-8	chr13	91409133	91409632	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	169469	NR_027039	144776	Hs.434120	NR_027039	ENSG00000231674	LINC00410	-	long intergenic non-protein coding RNA 410	ncRNA
0.555173-19	chr4	6452406	6452905	+	0	NA	intron (NM_001206995, intron 2 of 9)	intron (NM_001206995, intron 2 of 9)	21671	NM_020416	5522	Hs.479069	NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
1.50581-16	chr19	18682228	18682727	+	0	NA	promoter-TSS (NM_001321017)	promoter-TSS (NM_001321017)	-63	NM_001321017	7311	Hs.5308	NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
3.74688-11	chr10	101026091	101026590	+	0	NA	Intergenic	L1PB1|LINE|L1	-30708	NM_021828	60495	Hs.500750	NM_021828	ENSG00000172987	HPSE2	HPA2|HPR2|UFS|UFS1	heparanase 2 (inactive)	protein-coding
9.50782-16	chr2	138173991	138174490	+	0	NA	intron (NM_001316349, intron 14 of 27)	intron (NM_001316349, intron 14 of 27)	511262	NR_120402	101928273	Hs.560928	NR_120402		LOC101928273	-	uncharacterized LOC101928273	ncRNA
11.8442	chr1	32666157	32666656	+	0	NA	intron (NM_024296, intron 1 of 5)	CpG	419	NM_001301011	79140	Hs.534482	NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
0.296531-32	chr3	124487602	124488101	+	0	NA	intron (NM_002213, intron 12 of 14)	intron (NM_002213, intron 12 of 14)	36565	NR_036088	100422864		NR_036088	ENSG00000265981	MIR544B	-	microRNA 544b	ncRNA
6.51695	chr18	56531048	56531547	+	0	NA	promoter-TSS (NM_001318728)	promoter-TSS (NM_001318728)	-26	NM_001318728	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
2.61219-24	chr10	8911380	8911879	+	0	NA	Intergenic	SVA_D|Other|Other	-28323	NR_131944	105755953	Hs.564146	NR_131944	ENSG00000234752	LOC105755953	-	uncharacterized LOC105755953	ncRNA
1.17475-5	chr10	112327908	112328407	+	0	NA	intron (NM_005445, intron 1 of 28)	intron (NM_005445, intron 1 of 28)	708	NM_005445	9126	Hs.24485	NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
0.496351-12	chr15	85523785	85524284	+	0	NA	intron (NM_001243137, intron 1 of 21)	CpG	290	NM_001243137	5151	Hs.9333	NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
21.5864-2	chr18	46459898	46460397	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	9030	NM_001190823	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
2.1254	chr16	16191494	16191993	+	0	NA	intron (NM_004996, intron 19 of 30)	L2c|LINE|L2	125585	NM_001171	368	Hs.442182	NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
0.467237-29	chr6	151040400	151040899	+	0	NA	intron (NM_001329800, intron 1 of 15)	intron (NM_001329800, intron 1 of 15)	-1420	NM_001329803	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
2.55707-11	chr19	58915552	58916051	+	0	NA	Intergenic	SVA_D|Other|Other	-4240	NM_001318002	201514	Hs.439551	NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
2.61219-11	chr3	37034625	37035124	+	0	NA	promoter-TSS (NM_001167617)	promoter-TSS (NM_001167617)	33	NM_001258273	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	mutL homolog 1	protein-coding
10.2411-4	chr14	19932839	19933338	+	0	NA	Intergenic	Intergenic	-7754	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
15.6543-3	chr18	29757395	29757894	+	0	NA	Intergenic	Intergenic	-12343	NM_001308171	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
10.2687	chr6	137407167	137407666	+	0	NA	Intergenic	Intergenic	-41099	NM_001278723	53832	Hs.445868	NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
4.40093-3	chr1	51425833	51426332	+	0	NA	promoter-TSS (NM_007051)	promoter-TSS (NM_007051)	-146	NM_007051	11124	Hs.530402	NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
3.17855	chr2	175206216	175206715	+	0	NA	Intergenic	CpG	6644	NM_001145250	100131390	Hs.516603	NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
0.909791-10	chr6	138265999	138266498	+	0	NA	Intergenic	Intergenic	-76878	NR_049793	100130476	Hs.598050	NR_049793	ENSG00000237499	LOC100130476	-	uncharacterized LOC100130476	ncRNA
0.996329-11	chr11	32132210	32132709	+	0	NA	Intergenic	MIRc|SINE|MIR	19982	NM_002901	5954	Hs.97887	NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
0.145735-21	chrX	25033834	25034333	+	0	NA	promoter-TSS (NM_139058)	promoter-TSS (NM_139058)	-18	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
1.85752-10	chr5	133375118	133375617	+	0	NA	Intergenic	Intergenic	-34543	NM_003374	7416	Hs.519320	NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
3.08035-3	chr14	105577093	105577592	+	0	NA	Intergenic	SVA_F|Other|Other	16858	NR_110546	102723354	Hs.569410	NR_110546		LOC102723354	-	uncharacterized LOC102723354	ncRNA
0.705811-7	chr12	63187631	63188130	+	0	NA	intron (NM_020700, intron 3 of 9)	intron (NM_020700, intron 3 of 9)	140785	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
3.41035-14	chr6	40555416	40555915	+	0	NA	promoter-TSS (NM_020737)	promoter-TSS (NM_020737)	-462	NM_020737	57497	Hs.250015	NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
0.34328-18	chr8	76886252	76886751	+	0	NA	Intergenic	Intergenic	-432388	NR_105006	101926978	Hs.615028	NR_105006	ENSG00000254300	LINC01111	-	long intergenic non-protein coding RNA 1111	ncRNA
0.127808-29	chr16	69516280	69516779	+	0	NA	Intergenic	Intergenic	58031	NM_030579	80777	Hs.461131	NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
2.23299	chr21	38593366	38593865	+	0	NA	non-coding (NR_026719, exon 3 of 3)	non-coding (NR_026719, exon 3 of 3)	12811	NR_026719	257203	Hs.505159	NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9 (non-protein coding)	ncRNA
0.25028-14	chr5	151884957	151885456	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-100366	NM_020167	56923	Hs.731911	NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
0.574959-15	chr3	34824365	34824864	+	0	NA	Intergenic	Intergenic	610901	NR_110817	101928135	Hs.550715	NR_110817		LOC101928135	-	uncharacterized LOC101928135	ncRNA
11.0458	chr8	131713853	131714352	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-258196	NM_018482	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
20.6651-3	chr18	50674369	50674868	+	0	NA	intron (NM_005215, intron 7 of 28)	intron (NM_005215, intron 7 of 28)	-88853	NR_130465	100616232		NR_130465	ENSG00000263872	MIR4528	-	microRNA 4528	ncRNA
0.109954-8	chr3	72897395	72897894	+	0	NA	promoter-TSS (NM_018130)	promoter-TSS (NM_018130)	-46	NM_018130	55164	Hs.606584	NM_018130	ENSG00000144736	SHQ1	GRIM-1|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
1.53045-17	chr22	38539107	38539606	+	0	NA	intron (NM_001199562, intron 3 of 15)	intron (NM_001199562, intron 3 of 15)	-32680	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1 associated protein 2 like 2	protein-coding
1.0902-12	chr4	170948419	170948918	+	0	NA	Intergenic	CpG	-1087	NM_021647	9848	Hs.593942	NM_021647	ENSG00000198948	MFAP3L	NYD-sp9	microfibrillar associated protein 3 like	protein-coding
9.20819-14	chr1	211499906	211500405	+	0	NA	promoter-TSS (NM_001319207)	promoter-TSS (NM_001319207)	7	NM_001319207	7188	Hs.523930	NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
12.1396-3	chr9	132390201	132390700	+	0	NA	intron (NM_001286799, intron 1 of 3)	intron (NM_001286799, intron 1 of 3)	1727	NM_001286799	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
6.55608-6	chr2	8707158	8707657	+	0	NA	non-coding (NR_110257, exon 6 of 6)	non-coding (NR_110257, exon 6 of 6)	16515	NR_110257	101929567	Hs.634706	NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
5.37602-8	chr8	42010573	42011072	+	0	NA	intron (NM_006803, intron 1 of 8)	CpG	358	NM_006803	10947	Hs.654529	NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 mu 2 subunit	protein-coding
15.7675-17	chr20	40104658	40105157	+	0	NA	intron (NM_032221, intron 16 of 36)	intron (NM_032221, intron 16 of 36)	-109409	NM_052846	90187	Hs.726525	NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
3.03644-7	chr7	26239751	26240250	+	0	NA	promoter-TSS (NM_007276)	promoter-TSS (NM_007276)	413	NM_002137	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
1.45087-8	chr14	56388146	56388645	+	0	NA	Intergenic	Intergenic	-125003	NR_026797	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
5.05845-18	chr15	44955126	44955625	+	0	NA	intron (NM_001160227, intron 1 of 37)	CpG	501	NM_001160227	80208	Hs.656271	NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	spastic paraplegia 11 (autosomal recessive)	protein-coding
2.43364-13	chr5	137371594	137372093	+	0	NA	intron (NR_037900, intron 1 of 1)	MER91B|DNA|hAT-Tip100	-3041	NM_016603	51306	Hs.567453	NM_016603	ENSG00000031003	FAM13B	ARHGAP49|C5orf5|FAM13B1|KHCHP|N61	family with sequence similarity 13 member B	protein-coding
0.15923-34	chr1	210430877	210431721	+	0	NA	Intergenic	Intergenic	-23833	NR_024337	574036	Hs.446946	NR_024337	ENSG00000203706	SERTAD4-AS1	C1orf133	SERTAD4 antisense RNA 1	ncRNA
0.195421-9	chrX	37544997	37545496	+	0	NA	exon (NM_021083, exon 1 of 3)	exon (NM_021083, exon 1 of 3)	237	NM_021083	7504	Hs.78919	NM_021083	ENSG00000047597	XK	KX|NA|NAC|X1k|XKR1	X-linked Kx blood group	protein-coding
0.0436481-23	chr15	77363214	77363713	+	0	NA	5' UTR (NM_001168412, exon 1 of 6)	5' UTR (NM_001168412, exon 1 of 6)	107	NM_001168412	10099	Hs.744863	NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
0.296531-51	chr8	128569390	128570294	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-75458	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
0.296531-68	chr14	60557761	60558260	+	0	NA	promoter-TSS (NM_022495)	promoter-TSS (NM_022495)	-619	NM_022495	64430	Hs.509499	NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex homolog 4 (Drosophila)	protein-coding
0.118872-26	chr2	190152588	190153087	+	0	NA	Intergenic	Intergenic	-108232	NM_000393	1290	Hs.445827	NM_000393	ENSG00000204262	COL5A2	EDSC	collagen type V alpha 2 chain	protein-coding
3.50665-5	chr17	32966876	32967375	+	0	NA	TTS (NM_001304438)	TTS (NM_001304438)	59357	NM_001304438	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
0.452752-9	chr1	89313252	89313751	+	0	NA	Intergenic	MER21C|LTR|ERVL	43800	NM_001514	2959	Hs.481852	NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
5.5752-3	chr20	30437260	30437759	+	0	NA	intron (NM_001320479, intron 8 of 9)	CpG	-4089	NM_004118	2307	Hs.516971	NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
12.6122-7	chr10	25140488	25140987	+	0	NA	intron (NM_020200, intron 7 of 8)	intron (NM_020200, intron 7 of 8)	100836	NM_001282786	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
0.472076-11	chr1	2461572	2462071	+	0	NA	promoter-TSS (NM_001010926)	promoter-TSS (NM_001010926)	-137	NM_001010926	388585	Hs.57971	NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
1.17475-12	chr14	100796834	100797333	+	0	NA	TTS (NM_207117)	TTS (NM_207117)	7404	NM_207117	283600	Hs.108268	NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
0.472076-7	chr7	33888507	33889006	+	0	NA	Intergenic	Intergenic	-55767	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
25.1856-4	chr9	31588055	31588554	+	0	NA	Intergenic	Intergenic	-206816	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
14.389-3	chr2	149666541	149667040	+	0	NA	intron (NM_004522, intron 1 of 25)	L2a|LINE|L2	33998	NM_004522	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
7.47147-12	chr2	96714693	96715192	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-13220	NM_001321531	150763	Hs.348629	NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
0.254883-11	chr20	34750447	34750946	+	0	NA	intron (NM_012156, intron 1 of 21)	intron (NM_012156, intron 1 of 21)	8034	NM_012156	2036	Hs.437422	NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
0.101054-12	chr8	141844851	141845350	+	0	NA	intron (NM_001316342, intron 5 of 32)	intron (NM_001316342, intron 5 of 32)	166312	NM_153831	5747	Hs.395482	NM_005607	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
8.99629-14	chr3	188980549	188981048	+	0	NA	intron (NM_198485, intron 4 of 5)	MLT1F2|LTR|ERVL-MaLR	-22415	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
0.726296-4	chr18	12408414	12408913	+	0	NA	intron (NM_006553, intron 1 of 6)	L1PB4|LINE|L1	768	NM_006553	10650	Hs.514718	NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
15.0585-5	chr3	178617873	178618372	+	0	NA	Intergenic	Intergenic	-39929	NR_126560	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
1.52427-7	chr8	99853022	99853521	+	0	NA	intron (NM_001256312, intron 3 of 12)	MLT1F2|LTR|ERVL-MaLR	-15362	NM_006281	6788	Hs.492333	NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
2.13959-2	chr14	92572807	92573306	+	0	NA	promoter-TSS (NM_001127697)	promoter-TSS (NM_001127697)	-91	NM_001164777	4287	Hs.532632	NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
0.241089-9	chr6	170102459	170102958	+	0	NA	promoter-TSS (NM_001202550)	promoter-TSS (NM_001202550)	500	NM_001029863	387263	Hs.591375	NM_001029863	ENSG00000185127	C6orf120	-	chromosome 6 open reading frame 120	protein-coding
0.565055-5	chr7	82900441	82900940	+	0	NA	Intergenic	Intergenic	-108493	NM_033026	27445	Hs.12376	NM_014510	ENSG00000186472	PCLO	ACZ|PCH3	piccolo presynaptic cytomatrix protein	protein-coding
6.77781-7	chr14	97488049	97488548	+	0	NA	Intergenic	Intergenic	78382	NR_104113	145249		NR_104113	ENSG00000225163	LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
11.2321-2	chr6	70663354	70663853	+	0	NA	intron (NM_001858, intron 9 of 50)	intron (NM_001858, intron 9 of 50)	87155	NM_001858	1310	Hs.444842	NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
2.78189-3	chr8	102217196	102217695	+	0	NA	intron (NM_001267708, intron 1 of 5)	CpG	515	NM_016096	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
4.32974-12	chr19	879036	879535	+	0	NA	intron (NM_005481, intron 8 of 15)	intron (NM_005481, intron 8 of 15)	13933	NM_005481	10025	Hs.365207	NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
2.27678-12	chr4	3241766	3242265	+	0	NA	3' UTR (NM_002111, exon 67 of 67)	3' UTR (NM_002111, exon 67 of 67)	-4081	NM_001330620	345222	Hs.442291	NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
0.675262-28	chr17	30186084	30186583	+	0	NA	promoter-TSS (NM_018405)	promoter-TSS (NM_018405)	-7	NM_018405	55352	Hs.462729	NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
0.589858-20	chr14	105679170	105679669	+	0	NA	intron (NM_001242788, intron 14 of 16)	intron (NM_001242788, intron 14 of 16)	-31759	NM_001318380	256281	Hs.526432	NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
0.695604-5	chr14	78070196	78070695	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	12665	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
0.726296-8	chr14	97090837	97091336	+	0	NA	Intergenic	Intergenic	121884	NM_001293628	10914	Hs.253726	NM_032632	ENSG00000090060	PAPOLA	PAP	poly(A) polymerase alpha	protein-coding
0.070049-63	chr2	238467578	238468077	+	0	NA	Intergenic	Intergenic	-7390	NM_015893	51052	Hs.247710	NM_015893	ENSG00000071677	PRLH	PRH|PRRP	prolactin releasing hormone	protein-coding
9.39302-23	chr10	44069759	44070258	+	0	NA	promoter-TSS (NM_001324349)	promoter-TSS (NM_001324349)	57	NM_001099282	8187	Hs.25040	NM_005674	ENSG00000196793	ZNF239	HOK-2|MOK2	zinc finger protein 239	protein-coding
2.59637	chr2	241075502	241076001	+	0	NA	promoter-TSS (NM_138336)	promoter-TSS (NM_138336)	-4	NM_001163424	150678	Hs.293884	NM_138336	ENSG00000172428	COPS9	CSNAP|MYEOV2	COP9 signalosome subunit 9	protein-coding
1.96543-5	chr17	79935126	79935625	+	0	NA	promoter-TSS (NR_045351)	promoter-TSS (NR_045351)	-47	NM_001330528	79058	Hs.298351	NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1, UBX domain containing tether for SLC2A4	protein-coding
3.95774-13	chr6	155589567	155590066	+	0	NA	intron (NM_001001346, intron 1 of 1)	SVA_C|Other|Other	4669	NM_001001346	49861	Hs.567491	NM_001001346	ENSG00000171217	CLDN20	-	claudin 20	protein-coding
7.82516-2	chr2	208020488	208020987	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	10003	NM_003709	8609	Hs.59908	NM_003709	ENSG00000118263	KLF7	UKLF	Kruppel like factor 7	protein-coding
0.0524306-11	chr7	123210358	123210857	+	0	NA	intron (NR_111926, intron 4 of 7)	intron (NR_111926, intron 4 of 7)	-12649	NR_104168	4698	Hs.651219	NM_005000	ENSG00000128609	NDUFA5	B13|CI-13KD-B|CI-13kB|NUFM|UQOR13	NADH:ubiquinone oxidoreductase subunit A5	protein-coding
0.291884-25	chr13	50699590	50700089	+	0	NA	promoter-TSS (NR_002612)	promoter-TSS (NR_002612)	-162	NR_002612	8847	Hs.547964	NR_002612	ENSG00000231607	DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	ncRNA
1.34896-3	chr10	97416269	97416768	+	0	NA	promoter-TSS (NM_001323413)	promoter-TSS (NM_001323413)	49	NM_001017423	5832	Hs.500645	NM_002860	ENSG00000059573	ALDH18A1	ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B	aldehyde dehydrogenase 18 family member A1	protein-coding
3.43902-16	chr1	15910979	15911478	+	0	NA	exon (NM_024758, exon 1 of 7)	exon (NM_024758, exon 1 of 7)	377	NM_024758	79814	Hs.461532	NM_024758	ENSG00000116771	AGMAT	-	agmatinase	protein-coding
1.39063-14	chr12	29219074	29219573	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-82613	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
2.89883-16	chr7	24613235	24613734	+	0	NA	intron (NM_001303037, intron 1 of 11)	intron (NM_001303037, intron 1 of 11)	519	NM_001303037	51678	Hs.533355	NM_016447	ENSG00000105926	MPP6	PALS2|VAM-1|VAM1|p55T	membrane palmitoylated protein 6	protein-coding
4.24812-13	chr1	33004571	33005070	+	0	NA	promoter-TSS (NM_001040441)	promoter-TSS (NM_001040441)	74	NR_111980	653121	Hs.546479	NM_144621	ENSG00000160062	ZBTB8A	BOZF1|ZBTB8|ZNF916A	zinc finger and BTB domain containing 8A	protein-coding
0.990869-21	chr2	125083515	125084014	+	0	NA	intron (NM_130773, intron 3 of 23)	intron (NM_130773, intron 3 of 23)	300900	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
0.835461-4	chr3	126076877	126077376	+	0	NA	promoter-TSS (NM_014079)	promoter-TSS (NM_014079)	-890	NM_014079	28999	Hs.272215	NM_014079	ENSG00000163884	KLF15	KKLF	Kruppel like factor 15	protein-coding
0.0348833	chr16	75143475	75143974	+	0	NA	3' UTR (NM_032268, exon 5 of 5)	3' UTR (NM_032268, exon 5 of 5)	6946	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
2.81498-5	chr3	194801242	194801741	+	0	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	-13826	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
2.9073	chr4	76094510	76095009	+	0	NA	Intergenic	Intergenic	-184527	NR_033964	441025	Hs.407667	NR_033964	ENSG00000251383	LOC441025	-	uncharacterized LOC441025	ncRNA
3.75718-2	chr12	62654548	62655047	+	0	NA	TTS (NR_106740)	TTS (NR_106740)	657	NR_106740	102465133		NR_106740	ENSG00000135655	MIR6125	hsa-mir-6125|mir-6125	microRNA 6125	ncRNA
0.550241-5	chr3	12715595	12716094	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10144	NM_002880	5894	Hs.159130	NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
2.79014-26	chr10	133110684	133111183	+	0	NA	promoter-TSS (NM_174937)	promoter-TSS (NM_174937)	-949	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1 like	protein-coding
0.560111-15	chr14	57475167	57475666	+	0	NA	Intergenic	Intergenic	195515	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
7.54487-5	chr14	83261646	83262145	+	0	NA	Intergenic	Intergenic	-1172490	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
8.8941-17	chr7	64728360	64728859	+	0	NA	Intergenic	Intergenic	-110103	NM_001287534	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
1.79799-4	chr12	117175674	117176173	+	0	NA	promoter-TSS (NM_024738)	promoter-TSS (NM_024738)	-48	NM_024738	79794	Hs.592011	NM_024738	ENSG00000111412	C12orf49	-	chromosome 12 open reading frame 49	protein-coding
12.1896	chr1	226521035	226521534	+	0	NA	Intergenic	Intergenic	-23835	NM_001270410	286826	Hs.120817	NM_173083	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
1.49967-6	chr2	232574827	232575326	+	0	NA	intron (NM_002823, intron 1 of 4)	CpG-16069	1841	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding
85.4821-2	chr21	23763326	23763825	+	0	NA	Intergenic	AluSx3|SINE|Alu	292639	NR_038400	54143	Hs.352631	NR_038400	ENSG00000184856	LINC00308	C21orf74|NCRNA00308|PRED16	long intergenic non-protein coding RNA 308	ncRNA
11.3608-2	chr2	65710041	65710540	+	0	NA	Intergenic	L1ME1|LINE|L1	-50634	NM_181784	200734	Hs.59332	NM_181784	ENSG00000198369	SPRED2	Spred-2	sprouty related EVH1 domain containing 2	protein-coding
2.91579-2	chr12	27904396	27904895	+	0	NA	intron (NM_021821, intron 7 of 7)	LTR18B|LTR|ERVL	19564	NM_001146221	100287284	Hs.202178	NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding
8.09668-8	chr8	8860046	8860545	+	0	NA	promoter-TSS (NM_153332)	promoter-TSS (NM_153332)	-19	NM_153332	90459	Hs.20000	NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|THEX1	exoribonuclease 1	protein-coding
0.0261362-34	chr8	128303817	128304316	+	0	NA	intron (NR_117100, intron 5 of 5)	MLT1H1|LTR|ERVL-MaLR	47184	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLo-2|LINC01244	cancer susceptibility candidate 21 (non-protein coding)	ncRNA
5.0724-13	chr18	45354842	45355341	+	0	NA	Intergenic	SVA_B|Other|Other	101879	NM_005901	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
5.9346-3	chr9	107251449	107251948	+	0	NA	Intergenic	SVA_B|Other|Other	-14846	NM_001004485	138805	Hs.553602	NM_001004485	ENSG00000186881	OR13F1	OR9-6	olfactory receptor family 13 subfamily F member 1	protein-coding
0.25028-41	chr1	240160454	240160953	+	0	NA	Intergenic	Intergenic	-10121	NR_036695	645884	Hs.613280	NR_036695		RPS7P5	RPS7_2_183	ribosomal protein S7 pseudogene 5	pseudo
4.27128-9	chr15	66222585	66223084	+	0	NA	intron (NM_032445, intron 11 of 22)	LTR33A_|LTR|ERVL	61037	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
0.168249-10	chr19	58360913	58361412	+	0	NA	promoter-TSS (NM_001204817)	promoter-TSS (NM_001204817)	-19	NM_032828	84914	Hs.642598	NM_032828	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
16.3264	chr2	234246016	234246515	+	0	NA	intron (NM_000541, intron 11 of 15)	intron (NM_000541, intron 11 of 15)	-16888	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
22.66-2	chr2	112200271	112200770	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	52218	NR_136165	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-2HG	AGD2|AK001796|LINC00978|MIR4435-1HG	MIR4435-2 host gene	ncRNA
9.66576	chr1	65605445	65605944	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-7538	NM_203464	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
2.55707	chr4	144359096	144359595	+	0	NA	exon (NM_002039, exon 4 of 10)	exon (NM_002039, exon 4 of 10)	-75271	NM_003601	8467	Hs.558422	NM_003601	ENSG00000153147	SMARCA5	ISWI|SNF2H|WCRF135|hISWI|hSNF2H	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding
0.574959-6	chrX	24099611	24100110	+	0	NA	Intergenic	AluJb|SINE|Alu	26795	NM_001415	1968	Hs.539684	NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MRXSBRK|eIF-2gA	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
0.241089-21	chr9	130890331	130890830	+	0	NA	promoter-TSS (NM_001256335)	promoter-TSS (NM_001256335)	-113	NM_001256335	80142	Hs.495219	NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
16.1618-9	chr5	33607889	33608388	+	0	NA	intron (NM_030955, intron 16 of 23)	MER21B|LTR|ERVL	167256	NM_152295	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
3.95774-20	chr21	31655691	31656190	+	0	NA	promoter-TSS (NM_001085455)	promoter-TSS (NM_001085455)	-664	NM_001085455	643803	Hs.580883	NM_001085455	ENSG00000188694	KRTAP24-1	KAP24.1	keratin associated protein 24-1	protein-coding
0.310503-21	chr12	128113630	128114129	+	0	NA	Intergenic	Intergenic	7133	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
10.9528-2	chr6	3796546	3797045	+	0	NA	Intergenic	Intergenic	-44549	NM_183373	221749	Hs.484500	NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
8.44664	chr7	47535763	47536262	+	0	NA	intron (NM_022748, intron 3 of 30)	intron (NM_022748, intron 3 of 30)	85730	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
15.817-2	chr2	150467675	150468174	+	0	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-23594	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria and homocystinuria, cblD type	protein-coding
1.35489-26	chrX	7065513	7066012	+	0	NA	promoter-TSS (NM_001320751)	promoter-TSS (NM_001320751)	-139	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	mir-4767	microRNA 4767	ncRNA
1.53663-28	chr3	9745349	9745848	+	0	NA	promoter-TSS (NM_153635)	promoter-TSS (NM_153635)	88	NM_153635	151835	Hs.121335	NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
0.888424-18	chr11	91944698	91945197	+	0	NA	Intergenic	Intergenic	-140315	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding
0.680339-19	chr16	84047324	84047823	+	0	NA	intron (NM_001080442, intron 8 of 9)	intron (NM_001080442, intron 8 of 9)	28189	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FVH2	solute carrier family 38 member 8	protein-coding
16.968-2	chr8	102168177	102168676	+	0	NA	Intergenic	Intergenic	49534	NM_016096	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
0.127808-32	chr7	139118484	139118983	+	0	NA	Intergenic	Intergenic	-6461	NR_033999	100129148	Hs.744449	NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
1.33713-2	chr11	60771721	60772220	+	0	NA	intron (NM_001254751, intron 1 of 10)	intron (NM_001254751, intron 1 of 10)	32857	NR_045638	923	Hs.744366	NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
1.53045-8	chr22	21271129	21271628	+	0	NA	promoter-TSS (NM_005207)	promoter-TSS (NM_005207)	-336	NM_005207	1399	Hs.5613	NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
0.501223-2	chr3	191240937	191241436	+	0	NA	intron (NR_120606, intron 1 of 6)	intron (NR_120606, intron 1 of 6)	62234	NM_001083308	152138	Hs.690618	NM_001083308		PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
0.245682-9	chr16	85685647	85686866	+	0	NA	intron (NM_014615, intron 3 of 15)	intron (NM_014615, intron 3 of 15)	36332	NM_016095	51659	Hs.433180	NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
0.245682-20	chr5	122759243	122759742	+	0	NA	promoter-TSS (NM_001166226)	promoter-TSS (NM_001166226)	-206	NM_153223	153241	Hs.483209	NM_153223	ENSG00000168944	CEP120	CCDC100|SRTD13	centrosomal protein 120	protein-coding
7.74691-9	chr7	71171056	71171555	+	0	NA	intron (NM_022479, intron 9 of 10)	intron (NM_022479, intron 9 of 10)	-398549	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	ncRNA
0.438316-20	chr11	130304710	130305209	+	0	NA	Intergenic	Intergenic	-6071	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
2.38072-13	chr17	65374675	65375174	+	0	NA	intron (NM_181671, intron 1 of 9)	CpG	1527	NM_181671	26207	Hs.591185	NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
0.835461-7	chr15	59125965	59126464	+	0	NA	intron (NM_001040450, intron 6 of 8)	LTR5_Hs|LTR|ERVK	62653	NM_001040453	54629	Hs.591122	NM_019092	ENSG00000128923	FAM63B	-	family with sequence similarity 63 member B	protein-coding
10.5799-4	chr1	157285364	157285863	+	0	NA	Intergenic	L1PA6|LINE|L1	-177230	NM_001145312	2117	Hs.105636	NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1|bA110J1.4	ETS variant 3	protein-coding
6.55608-12	chr12	31226454	31226953	+	0	NA	promoter-TSS (NM_004399)	promoter-TSS (NM_004399)	-76	NM_001257144	1663	Hs.443960	NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
0.565055-14	chr21	46962051	46962550	+	0	NA	promoter-TSS (NM_001205206)	promoter-TSS (NM_001205206)	85	NM_194255	6573	Hs.84190	NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	solute carrier family 19 member 1	protein-coding
13.8828-3	chr9	137122624	137123123	+	0	NA	Intergenic	Intergenic	-93187	NR_023344	100151684	Hs.545589	NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear (U12-dependent splicing)	snRNA
20.5306	chr9	81631672	81632171	+	0	NA	Intergenic	Intergenic	128660	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
0.574959-4	chr2	74007048	74007547	+	0	NA	promoter-TSS (NM_003584)	promoter-TSS (NM_003584)	-13	NM_003584	8446	Hs.14611	NM_003584	ENSG00000144048	DUSP11	PIR1	dual specificity phosphatase 11	protein-coding
0.118872-9	chr11	72542446	72542945	+	0	NA	Intergenic	Intergenic	17244	NM_001318766	89849	Hs.653186	NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
33.7986	chr2	227568166	227568665	+	0	NA	Intergenic	Intergenic	-44906	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
2.04815-18	chr7	92219486	92219985	+	0	NA	promoter-TSS (NM_001288584)	promoter-TSS (NM_001288584)	-27	NR_109929	257415	Hs.18564	NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
0.51587-17	chr15	81616798	81617297	+	0	NA	promoter-TSS (NM_181900)	promoter-TSS (NM_181900)	373	NR_120365	101929655	Hs.696654	NR_120365		TMC3-AS1	-	TMC3 antisense RNA 1	ncRNA
1.10698-8	chr19	51014308	51014807	+	0	NA	promoter-TSS (NM_001270686)	promoter-TSS (NM_001270686)	55	NM_001270640	126119	Hs.467151	NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
0.118872-12	chr11	112676387	112676886	+	0	NA	Intergenic	Intergenic	-155333	NM_000615	4684	Hs.503878	NM_000615	ENSG00000149294	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
17.4958-4	chr18	32956726	32957225	+	0	NA	intron (NM_001322290, intron 1 of 4)	CpG	326	NM_001322291	252884	Hs.351005	NM_145756	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
2.52588-10	chr17	45973127	45973626	+	0	NA	promoter-TSS (NM_003110)	promoter-TSS (NM_003110)	-140	NM_003110	6668	Hs.514276	NM_003110	ENSG00000167182	SP2	-	Sp2 transcription factor	protein-coding
24.6597-3	chr3	167695619	167696118	+	0	NA	Intergenic	LTR67B|LTR|ERVL	82132	NR_033843	646168	Hs.390443	NR_033843	ENSG00000244227	LINC01330	-	long intergenic non-protein coding RNA 1330	pseudo
1.20904-11	chr8	142194674	142195173	+	0	NA	intron (NM_014957, intron 17 of 22)	intron (NM_014957, intron 17 of 22)	43750	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
0.604807	chr15	40361345	40361844	+	0	NA	Intergenic	Intergenic	30082	NR_040060	100131089	Hs.386000	NR_040059	ENSG00000248508	SRP14-AS1	-	SRP14 antisense RNA1 (head to head)	ncRNA
0.254883-12	chr15	60884502	60885001	+	0	NA	promoter-TSS (NM_134262)	promoter-TSS (NM_134262)	-44	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
9.95679-8	chr20	58319189	58319688	+	0	NA	intron (NM_001199505, intron 2 of 12)	intron (NM_001199505, intron 2 of 12)	23173	NM_183246	116154	Hs.473218	NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
12.2621-4	chr13	95408102	95408601	+	0	NA	Intergenic	L1PA16|LINE|L1	-4844	NR_110754	101927284	Hs.551673	NR_110754		LOC101927284	-	uncharacterized LOC101927284	ncRNA
1.39063-10	chr3	9905684	9906183	+	0	NA	Intergenic	Intergenic	14563	NM_001199623	63924	Hs.567562	NM_022094	ENSG00000187288	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death inducing DFFA like effector c	protein-coding
15.0307-2	chr16	77977544	77978043	+	0	NA	intron (NM_020927, intron 7 of 8)	intron (NM_020927, intron 7 of 8)	-78650	NM_005752	10143	Hs.177936	NM_005752	ENSG00000166509	CLEC3A	CLECSF1	C-type lectin domain family 3 member A	protein-coding
15.0585-3	chr2	234583438	234583937	+	0	NA	intron (NM_021027, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	3143	NM_021027	54600	Hs.554822	NM_021027	ENSG00000241119	UGT1A9	HLUGP4|LUGP4|UDPGT|UDPGT 1-9|UGT-1I|UGT1-09|UGT1-9|UGT1.9|UGT1A9S|UGT1AI|UGT1I	UDP glucuronosyltransferase family 1 member A9	protein-coding
13.0103-8	chr20	45948443	45948942	+	0	NA	non-coding (NR_024594, exon 1 of 1)	non-coding (NR_024594, exon 1 of 1)	1446	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
0.952845-13	chr18	34973380	34973879	+	0	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	72838	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
2.81498-7	chr22	29451347	29451846	+	0	NA	3' UTR (NM_001206998, exon 9 of 9)	3' UTR (NM_001206998, exon 9 of 9)	6311	NM_015370	25770	Hs.50891	NM_015370	ENSG00000100249	C22orf31	HS747E2A|bK747E2.1	chromosome 22 open reading frame 31	protein-coding
4.53457-4	chr12	85882871	85883370	+	0	NA	Intergenic	MIR|SINE|MIR	209084	NM_006982	8092	Hs.41683	NM_006982	ENSG00000180318	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding
8.76148	chr11	75099561	75100060	+	0	NA	Intergenic	Intergenic	-10725	NM_001260506	6188	Hs.546286	NM_001005	ENSG00000149273	RPS3	S3	ribosomal protein S3	protein-coding
0.80399-14	chr6	69942934	69943433	+	0	NA	exon (NM_001704, exon 18 of 32)	exon (NM_001704, exon 18 of 32)	563866	NM_018368	55788	Hs.271643	NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
8.47712-7	chr17	56468767	56469266	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	11066	NM_001305545	54894	Hs.584916	NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
4.25969-6	chr19	55419326	55419825	+	0	NA	intron (NM_004829, intron 3 of 6)	SVA_B|Other|Other	2067	NM_001242357	9437	Hs.97084	NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
2.61219-19	chr3	38494889	38495388	+	0	NA	promoter-TSS (NM_001106)	promoter-TSS (NM_001106)	-652	NM_001106	93	Hs.174273	NM_001106	ENSG00000114739	ACVR2B	ACTRIIB|ActR-IIB|HTX4	activin A receptor type 2B	protein-coding
11.4997	chr6	157521634	157522133	+	0	NA	exon (NM_001346813, exon 18 of 20)	exon (NM_001346813, exon 18 of 20)	223408	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
3.74688-13	chr4	89079386	89079885	+	0	NA	5' UTR (NM_004827, exon 1 of 16)	5' UTR (NM_004827, exon 1 of 16)	376	NM_004827	9429	Hs.480218	NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding
0.428718-9	chr2	86771449	86771948	+	0	NA	intron (NM_001198954, intron 3 of 7)	SVA_A|Other|Other	18922	NM_016079	51652	Hs.591582	NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
0.132283-27	chr13	21387987	21388486	+	0	NA	intron (NM_022459, intron 9 of 22)	intron (NM_022459, intron 9 of 22)	-40139	NM_001318939	221143	Hs.26674	NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding
6.30784-3	chr2	136289251	136289750	+	0	NA	promoter-TSS (NM_032143)	promoter-TSS (NM_032143)	475	NM_001282799	23518	Hs.412462	NM_015361	ENSG00000048991	R3HDM1	R3HDM	R3H domain containing 1	protein-coding
2.13959-8	chr6	64283310	64283809	+	0	NA	intron (NM_003463, intron 1 of 5)	CpG	1642	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
1.88425-11	chr2	106527295	106527794	+	0	NA	Intergenic	Intergenic	59340	NM_001004720	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
0.301184-31	chr9	138603163	138603662	+	0	NA	intron (NM_001272003, intron 1 of 30)	MIRb|SINE|MIR	9381	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
0.952845-9	chr13	113654870	113655369	+	0	NA	promoter-TSS (NM_001320817)	promoter-TSS (NM_001320817)	-909	NM_001320815	23263	Hs.170422	NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
0.00434512-22	chr4	102122533	102123032	+	0	NA	intron (NM_001130691, intron 1 of 12)	intron (NM_001130691, intron 1 of 12)	39247	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
6.03801-4	chr12	31515588	31516087	+	0	NA	Intergenic	Intergenic	-36678	NM_001135812	58516	Hs.505154	NM_021238	ENSG00000139146	FAM60A	C12orf14|L4|TERA	family with sequence similarity 60 member A	protein-coding
0.0174066-10	chr15	101792012	101792511	+	0	NA	promoter-TSS (NM_014918)	promoter-TSS (NM_014918)	-124	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
1.59894-5	chr2	73402708	73403207	+	0	NA	Intergenic	CpG	-26429	NM_001134462	344022	Hs.694384	NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
16.3639-3	chr6	6631677	6632176	+	0	NA	intron (NM_004271, intron 3 of 4)	MER58B|DNA|hAT-Charlie	-8867	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
12.84-7	chr8	5086393	5086892	+	0	NA	Intergenic	Intergenic	-234314	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
13.4104	chr7	2237728	2238227	+	0	NA	intron (NM_001013836, intron 10 of 18)	intron (NM_001013836, intron 10 of 18)	34606	NM_001013836	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
10.4335-3	chr2	55275012	55275511	+	0	NA	intron (NM_001321904, intron 2 of 9)	Tigger3b|DNA|TcMar-Tigger	541	NM_001321862	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
4.97573-9	chr1	221096274	221096773	+	0	NA	Intergenic	Intergenic	-43041	NR_046901	100873924	Hs.645593	NR_046901	ENSG00000257551	HLX-AS1	-	HLX antisense RNA 1	ncRNA
3.66532-2	chr1	228289871	228290370	+	0	NA	intron (NR_130975, intron 4 of 8)	CpG-2288	1043	NM_024319	79169	Hs.445952	NM_024319	ENSG00000143793	C1orf35	MMTAG2	chromosome 1 open reading frame 35	protein-coding
3.60514-5	chr11	8008517	8009247	+	0	NA	promoter-TSS (NM_003754)	promoter-TSS (NM_003754)	15	NM_003754	8665	Hs.516023	NM_003754	ENSG00000175390	EIF3F	EIF3S5|eIF3-p47	eukaryotic translation initiation factor 3 subunit F	protein-coding
0.741724-13	chr11	86299932	86300431	+	0	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	83059	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
11.8111	chr1	116810734	116811233	+	0	NA	Intergenic	Intergenic	-104812	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
0.123337-36	chr7	103969036	103969535	+	0	NA	exon (NM_199000, exon 1 of 3)	exon (NM_199000, exon 1 of 3)	181	NM_199000	375612	Hs.659164	NM_199000	ENSG00000187416	LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
4.67246-3	chr2	7155415	7155914	+	0	NA	intron (NM_014746, intron 5 of 8)	intron (NM_014746, intron 5 of 8)	62347	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
11.4146-3	chr5	138611445	138611944	+	0	NA	intron (NM_001194954, intron 1 of 16)	intron (NM_001194954, intron 1 of 16)	2253	NR_003141	724102	Hs.268939	NR_003141		SNHG4	NCRNA00059|U19H	small nucleolar RNA host gene 4	ncRNA
3.92545-3	chr3	5099384	5099883	+	0	NA	Intergenic	Intergenic	-64297	NM_018184	55207	Hs.250009	NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
4.13413-8	chr17	30822044	30822543	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	8188	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
0.47692-25	chr17	72766780	72767279	+	0	NA	non-coding (NR_130953, exon 7 of 7)	non-coding (NR_130953, exon 7 of 7)	5535	NM_001305079	26151	Hs.144058	NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
37.5945	chr11	85517802	85518301	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	4151	NM_032943	54843	Hs.369520	NM_032379	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
17.2584-2	chr12	19426758	19427257	+	0	NA	intron (NM_001256470, intron 10 of 31)	MamRep605|Unknown|Unknown	68748	NM_001256787	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
25.6225	chr11	117547146	117547645	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	120581	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
0.118872-54	chr6	56708768	56709267	+	0	NA	promoter-TSS (NM_183380)	promoter-TSS (NM_183380)	233	NR_125866	101930010	Hs.650232	NR_125866		LOC101930010	-	uncharacterized LOC101930010	ncRNA
0.15923-10	chr7	85183503	85184002	+	0	NA	Intergenic	Intergenic	133314	NR_134240	105375380	Hs.679608	NR_134240	ENSG00000225128	LINC00972	-	long intergenic non-protein coding RNA 972	ncRNA
0.555173-18	chr7	150784373	150784872	+	0	NA	intron (NM_001042535, intron 1 of 8)	CpG	1113	NM_031946	116988	Hs.647075	NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
9.66576-15	chr6	53516682	53517181	+	0	NA	exon (NM_001003760, exon 3 of 3)	exon (NM_001003760, exon 3 of 3)	13575	NM_001003760	401265	Hs.131064	NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
0.376307-47	chr20	33872342	33872841	+	0	NA	promoter-TSS (NM_181468)	promoter-TSS (NM_181468)	28	NR_052022	3692	Hs.743992	NM_002212	ENSG00000242372	EIF6	CAB|EIF3A|ITGB4BP|b(2)gcn|eIF-6|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding
2.99296-2	chr22	21212860	21213359	+	0	NA	promoter-TSS (NM_058004)	promoter-TSS (NM_058004)	-9	NM_058004	5297	Hs.529438	NM_002650	ENSG00000241973	PI4KA	PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230	phosphatidylinositol 4-kinase alpha	protein-coding
2.13959-14	chr2	122012873	122013372	+	0	NA	intron (NM_014553, intron 2 of 14)	MIRb|SINE|MIR	29656	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
12.1325-2	chr6	34031323	34031822	+	0	NA	intron (NM_001282847, intron 2 of 9)	intron (NM_001282847, intron 2 of 9)	42187	NM_001256813	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
0.565055-8	chr11	17452683	17453182	+	0	NA	intron (NM_001287174, intron 11 of 38)	intron (NM_001287174, intron 11 of 38)	-42054	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
0.296531-13	chr8	73795007	73795506	+	0	NA	intron (NM_004770, intron 2 of 2)	Charlie8|DNA|hAT-Charlie	-125841	NM_003218	7013	Hs.442707	NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
0.0524306-20	chr15	63385674	63386173	+	0	NA	Intergenic	Intergenic	-28076	NM_032857	114294	Hs.410388	NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
3.90406-2	chr11	107435889	107436388	+	0	NA	intron (NM_001301010, intron 1 of 11)	intron (NM_001301010, intron 1 of 11)	323	NM_001301010	91801	Hs.503763	NM_138775	ENSG00000137760	ALKBH8	ABH8|TRM9|TRMT9	alkB homolog 8, tRNA methyltransferase	protein-coding
0.310503-10	chr14	78379459	78379958	+	0	NA	intron (NM_020421, intron 7 of 10)	intron (NM_020421, intron 7 of 10)	113282	NM_001142545	57143	Hs.413208	NM_020421	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
1.70696-7	chr4	120751492	120751991	+	0	NA	Intergenic	Intergenic	-26071	NR_110660	101927007	Hs.143958	NR_110660	ENSG00000250772	LINC01365	-	long intergenic non-protein coding RNA 1365	ncRNA
10.7572	chr5	148184808	148185307	+	0	NA	Intergenic	Intergenic	-21099	NM_000024	154	Hs.2551	NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
1.37869-13	chr16	2827085	2827584	+	0	NA	promoter-TSS (NM_007108)	promoter-TSS (NM_007108)	-37	NM_207013	6923	Hs.172772	NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
0.400052-50	chr16	32876553	32877052	+	0	NA	Intergenic	Intergenic	19661	NR_003083	386757	Hs.433146	NM_198857	ENSG00000214617	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
0.710923-8	chr22	19166347	19166846	+	0	NA	promoter-TSS (NM_001256534)	promoter-TSS (NM_001256534)	-220	NR_046298	6576	Hs.111024	NM_005984	ENSG00000100075	SLC25A1	CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
0.145735-32	chr20	3827184	3827683	+	0	NA	promoter-TSS (NM_001206491)	promoter-TSS (NM_001206491)	-13	NR_037921	57506	Hs.570362	NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
2.79014-13	chr1	7507049	7507548	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-324031	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
1.73277-20	chr11	66623292	66623791	+	0	NA	intron (NM_001040716, intron 12 of 22)	intron (NM_001040716, intron 12 of 22)	-1335	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
0.127808-20	chr13	98931773	98932272	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	71244	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
2.0204-7	chr5	95680364	95680863	+	0	NA	intron (NR_130776, intron 3 of 4)	intron (NR_130776, intron 3 of 4)	87250	NM_001177875	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
0.0788851-13	chr11	62192101	62192600	+	0	NA	Intergenic	Intergenic	5843	NM_003357	7356	Hs.523732	NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
12.2403	chr4	18108169	18108668	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-84920	NR_136669	254251	Hs.446201	NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
1.16339-18	chr1	7843785	7844284	+	0	NA	promoter-TSS (NM_001289861)	promoter-TSS (NM_001289861)	-455	NM_016831	8863	Hs.162200	NM_016831	ENSG00000049246	PER3	FASPS3|GIG13	period circadian clock 3	protein-coding
0.123337-8	chr15	50440449	50440948	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29279	NR_073596	79895	Hs.511311	NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
0.00869459-2	chr8	7916554	7917053	+	0	NA	Intergenic	CpG	29808	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
10.8884	chr1	34872665	34873164	+	0	NA	Intergenic	Intergenic	230361	NM_001134734	84970	Hs.194610	NM_032884	ENSG00000142698	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
14.8812-4	chr1	60456105	60456604	+	0	NA	exon (NM_152377, exon 12 of 12)	exon (NM_152377, exon 12 of 12)	-63884	NR_134981	1573	Hs.152096	NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
1.34896-8	chr14	103315521	103316020	+	0	NA	intron (NM_145725, intron 2 of 11)	intron (NM_145725, intron 2 of 11)	71954	NM_145725	7187	Hs.510528	NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor associated factor 3	protein-coding
0.141246-22	chr6	158980922	158981421	+	0	NA	intron (NM_020823, intron 1 of 16)	CpG	23703	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
1.88425-3	chr4	110736547	110737046	+	0	NA	5' UTR (NM_018983, exon 1 of 7)	5' UTR (NM_018983, exon 1 of 7)	130	NM_032993	54433	Hs.69851	NM_018983	ENSG00000109534	GAR1	NOLA1	GAR1 ribonucleoprotein	protein-coding
1.95861-10	chr17	7464914	7465413	+	0	NA	promoter-TSS (NM_015670)	promoter-TSS (NM_015670)	-146	NR_037926	100533955	Hs.129673	NR_037926		SENP3-EIF4A1	-	SENP3-EIF4A1 readthrough (NMD candidate)	ncRNA
14.1117-2	chr20	5748128	5748627	+	0	NA	intron (NM_001303477, intron 2 of 3)	intron (NM_001303477, intron 2 of 3)	17344	NM_001303479	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
12.5104-4	chr14	90771655	90772154	+	0	NA	intron (NM_017970, intron 4 of 13)	L1ME2z|LINE|L1	26577	NM_017970	55051	Hs.528131	NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
0.0261362-36	chrX	153238638	153239137	+	0	NA	intron (NM_003492, intron 1 of 1)	intron (NM_003492, intron 1 of 1)	896	NM_003492	8269	Hs.23119	NM_003492	ENSG00000177854	TMEM187	CXorf12|DXS9878E|ITBA1	transmembrane protein 187	protein-coding
1.79799-13	chr17	79700682	79701181	+	0	NA	Intergenic	Intergenic	21665	NM_001270953	1468	Hs.548187	NM_012140	ENSG00000183048	SLC25A10	DIC	solute carrier family 25 member 10	protein-coding
0.589858-8	chr4	88114581	88115080	+	0	NA	intron (NM_001292003, intron 2 of 9)	Tigger3b|DNA|TcMar-Tigger	26590	NM_001292003	57563	Hs.106601	NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
3.80907-3	chr10	105532034	105532533	+	0	NA	intron (NM_014631, intron 2 of 13)	intron (NM_014631, intron 2 of 13)	25746	NR_038940	100505839	Hs.655149	NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
0.550241-26	chr7	155363250	155363749	+	0	NA	Intergenic	Intergenic	-36960	NM_001103176	285888	Hs.146751	NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
0.199966-14	chr14	100792359	100792858	+	0	NA	intron (NM_207117, intron 3 of 5)	intron (NM_207117, intron 3 of 5)	2929	NM_207117	283600	Hs.108268	NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
0.0130484-13	chr12	58165666	58166165	+	0	NA	promoter-TSS (NM_015433)	promoter-TSS (NM_015433)	-1	NM_005371	4234	Hs.42957	NM_005371	ENSG00000037897	METTL1	C12orf1|TRM8|TRMT8|YDL201w	methyltransferase like 1	protein-coding
15.0724-5	chr5	101643464	101643963	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-11460	NM_180991	353189	Hs.127648	NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
3.24222-4	chr6	108256527	108257026	+	0	NA	intron (NM_007214, intron 1 of 20)	SVA_D|Other|Other	22706	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
6.49752-2	chr2	227655944	227656443	+	0	NA	intron (NM_005544, intron 1 of 1)	CpG	7313	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
22.7737	chr9	2559445	2559944	+	0	NA	intron (NR_015375, intron 1 of 3)	L1M1|LINE|L1	-62080	NM_001322226	7436	Hs.370422	NM_003383	ENSG00000147852	VLDLR	CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH	very low density lipoprotein receptor	protein-coding
2.0204-2	chr11	7534831	7535330	+	0	NA	promoter-TSS (NM_003621)	promoter-TSS (NM_003621)	84	NM_003621	8495	Hs.655714	NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
0.726296-3	chr1	246999427	246999926	+	0	NA	Intergenic	L1MB8|LINE|L1	46757	NR_015422	149134	Hs.720494	NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
0.639892-16	chr4	141805559	141806058	+	0	NA	intron (NM_020724, intron 6 of 6)	intron (NM_020724, intron 6 of 6)	-128337	NM_015130	23158	Hs.480819	NM_015130	ENSG00000109436	TBC1D9	GRAMD9|MDR1	TBC1 domain family member 9	protein-coding
0.680339-33	chr15	62358850	62359349	+	0	NA	promoter-TSS (NM_207322)	promoter-TSS (NM_207322)	-77	NM_207322	145741	Hs.202656	NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium dependent domain containing 4A	protein-coding
1.17475-30	chr11	64216787	64217286	+	0	NA	non-coding (NR_073177, exon 1 of 2)	non-coding (NR_073177, exon 1 of 2)	507	NR_073177	100996455	Hs.634142	NR_073177	ENSG00000181908	LOC100996455	-	uncharacterized LOC100996455	ncRNA
2.07608-12	chr2	146888420	146888919	+	0	NA	Intergenic	L1PA16|LINE|L1	-455956	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
0.76238-6	chr16	30569130	30569629	+	0	NA	exon (NM_001172679, exon 1 of 3)	exon (NM_001172679, exon 1 of 3)	263	NM_001172679	92595	Hs.132227	NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
10.6148-6	chr8	22102519	22103018	+	0	NA	promoter-TSS (NR_029714)	promoter-TSS (NR_029714)	149	NM_001722	661	Hs.148342	NM_001722	ENSG00000168495	POLR3D	BN51T|RPC4|RPC53|TSBN51	RNA polymerase III subunit D	protein-coding
22.66-3	chr6	157192523	157193022	+	0	NA	exon (NM_020732, exon 3 of 20)	exon (NM_020732, exon 3 of 20)	-91907	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
0.400052-6	chr22	25506909	25507408	+	0	NA	intron (NR_038941, intron 2 of 4)	intron (NR_038941, intron 2 of 4)	1501	NR_038941	100128531	Hs.662126	NR_038941	ENSG00000203280	LOC100128531	-	uncharacterized LOC100128531	ncRNA
15.0864-3	chr1	201095825	201096324	+	0	NA	Intergenic	Intergenic	-11574	NM_001270601	647219	Hs.143949	NM_001270601	ENSG00000232237	ASCL5	bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding
32.5885	chr8	123926275	123926774	+	0	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	128139	NM_024295	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
3.33482-3	chr9	103235024	103235523	+	0	NA	promoter-TSS (NM_003692)	promoter-TSS (NM_003692)	-247	NM_003692	8577	Hs.598100	NM_003692	ENSG00000241697	TMEFF1	C9orf2|CT120.1|H7365|TR-1	transmembrane protein with EGF like and two follistatin like domains 1	protein-coding
1.99283-14	chr9	114731391	114731890	+	0	NA	Intergenic	Intergenic	37260	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
9.28118-10	chr1	16040944	16041443	+	0	NA	intron (NM_015164, intron 1 of 19)	intron (NM_015164, intron 1 of 19)	-21616	NM_207348	284723	Hs.631867	NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
0.127808-14	chr19	46312775	46313274	+	0	NA	intron (NM_030785, intron 2 of 5)	intron (NM_030785, intron 2 of 5)	5581	NM_030785	81492	Hs.146544	NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
4.05607-5	chr12	52596925	52597424	+	0	NA	Intergenic	Intergenic	7465	NM_001242696	283403	Hs.667179	NM_001242696		C12orf80	-	chromosome 12 open reading frame 80	protein-coding
0.127808-24	chr5	115909306	115909805	+	0	NA	intron (NM_001300780, intron 1 of 19)	CpG	1067	NM_001300780	57556	Hs.156967	NM_020681	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	semaphorin 6A	protein-coding
1.91114	chr4	139894063	139894562	+	0	NA	intron (NR_133945, intron 2 of 2)	MER91A|DNA|hAT-Tip100	39488	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
0.0305075-66	chr11	65769907	65770406	+	0	NA	promoter-TSS (NM_001242481)	promoter-TSS (NM_001242481)	-519	NM_001242485	84285	Hs.425178	NM_032325	ENSG00000175376	EIF1AD	haponin	eukaryotic translation initiation factor 1A domain containing	protein-coding
3.28827-15	chr6	25250970	25251469	+	0	NA	intron (NR_110863, intron 2 of 2)	intron (NR_110863, intron 2 of 2)	10416	NR_110862	101928663	Hs.561600	NR_110862		LOC101928663	-	uncharacterized LOC101928663	ncRNA
10.2411	chr10	76508208	76508707	+	0	NA	Intergenic	Intergenic	-77714	NM_012330	23522	Hs.35758	NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
1.64944-6	chr22	50963514	50964415	+	0	NA	promoter-TSS (NM_005138)	promoter-TSS (NM_005138)	69	NM_001169111	9997	Hs.180903	NM_005138	ENSG00000130489	SCO2	CEMCOX1|MYP6|SCO1L	SCO2, cytochrome c oxidase assembly protein	protein-coding
0.366845-18	chr3	182817124	182817623	+	0	NA	promoter-TSS (NM_001293273)	promoter-TSS (NM_001293273)	2	NM_001293273	56922	Hs.47649	NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA	methylcrotonoyl-CoA carboxylase 1	protein-coding
0.5061-24	chr2	96990795	96991294	+	0	NA	promoter-TSS (NM_001008949)	promoter-TSS (NM_001008949)	-18	NM_001008949	150771	Hs.65009	NM_178495	ENSG00000198885	ITPRIPL1	KIAA1754L	inositol 1,4,5-trisphosphate receptor interacting protein-like 1	protein-coding
1.36677	chr10	29737841	29738340	+	0	NA	intron (NR_110927, intron 2 of 2)	intron (NR_110927, intron 2 of 2)	38918	NR_110928	102724316	Hs.499209	NR_003930	ENSG00000224597	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
4.85452-10	chr17	3757874	3758373	+	0	NA	Intergenic	SVA_D|Other|Other	-8578	NM_001114118	55421	Hs.120963	NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
0.222764-7	chr7	91569854	91570353	+	0	NA	promoter-TSS (NM_147185)	promoter-TSS (NM_147185)	-86	NM_005751	10142	Hs.651221	NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
0.400052-51	chr10	43788171	43788670	+	0	NA	Intergenic	Intergenic	-26053	NM_145313	221002	Hs.125293	NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
1.29011-6	chr2	215406526	215407025	+	0	NA	intron (NM_001080500, intron 3 of 3)	intron (NM_001080500, intron 3 of 3)	31869	NR_047698	100885780	Hs.665982	NR_047698	ENSG00000224257	VWC2L-IT1	-	VWC2L intronic transcript 1	ncRNA
2.0412-4	chr9	135308511	135309010	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	23177	NM_207417	389799	Hs.201709	NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
10.2411-7	chr6	88466513	88467012	+	0	NA	Intergenic	MIRc|SINE|MIR	-27816	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
1.89767-18	chr11	112090367	112090866	+	0	NA	TTS (NM_001256398)	TTS (NM_001256398)	-6472	NM_000317	5805	Hs.503860	NM_000317	ENSG00000150787	PTS	PTPS	6-pyruvoyltetrahydropterin synthase	protein-coding
0.419142-44	chr6	146056115	146056614	+	0	NA	exon (NM_005670, exon 1 of 4)	exon (NM_005670, exon 1 of 4)	359	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
5.33132-11	chr19	42772405	42772904	+	0	NA	promoter-TSS (NM_001304815)	promoter-TSS (NM_001304815)	-35	NM_001304815	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	-	capicua transcriptional repressor	protein-coding
0.101054-29	chr5	31854174	31854673	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	81842	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
0.594835-16	chr11	67187866	67188365	+	0	NA	exon (NM_001166222, exon 8 of 10)	exon (NM_001166222, exon 8 of 10)	4966	NM_020811	57571	Hs.502982	NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
0.433514-5	chr6	64632985	64633484	+	0	NA	intron (NM_001292009, intron 35 of 43)	intron (NM_001292009, intron 35 of 43)	276803	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
27.0553	chr11	31658478	31658977	+	0	NA	intron (NM_001288725, intron 7 of 10)	intron (NM_001288725, intron 7 of 10)	127451	NM_001288725	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4	elongator acetyltransferase complex subunit 4	protein-coding
4.42493-14	chr9	119599245	119599744	+	0	NA	intron (NM_014010, intron 10 of 21)	intron (NM_014010, intron 10 of 21)	149913	NM_012210	22954	Hs.591910	NM_012210	ENSG00000119401	TRIM32	BBS11|HT2A|LGMD2H|TATIP	tripartite motif containing 32	protein-coding
0.296531-116	chr9_gl000199_random	58866	59365	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.0305075-50	chr12	118156363	118156862	+	0	NA	intron (NM_173598, intron 4 of 19)	intron (NM_173598, intron 4 of 19)	249416	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
6.28932-17	chr9	27343025	27343524	+	0	NA	intron (NM_024761, intron 3 of 3)	SVA_B|Other|Other	-46137	NM_020641	54586	Hs.163070	NM_020641	ENSG00000120160	EQTN	AFAF|C9orf11|SPACA8	equatorin	protein-coding
7.82516-8	chr9	104131013	104131512	+	0	NA	intron (NM_001127610, intron 2 of 3)	intron (NM_001127610, intron 2 of 3)	14539	NM_001127610	570	Hs.284712	NM_001701	ENSG00000136881	BAAT	BACAT|BAT	bile acid-CoA:amino acid N-acyltransferase	protein-coding
0.570004-4	chr8	134461617	134462116	+	0	NA	Intergenic	Intergenic	122317	NM_173344	6482	Hs.374257	NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
2.38824-8	chr6	170189978	170190477	+	0	NA	promoter-TSS (NR_026780)	promoter-TSS (NR_026780)	58	NR_026780	80069	Hs.677182	NM_025002	ENSG00000231690	LINC00574	C6orf208|dJ182D15.1	long intergenic non-protein coding RNA 574	ncRNA
19.4692-6	chr9	119940816	119941315	+	0	NA	intron (NM_014010, intron 3 of 21)	intron (NM_014010, intron 3 of 21)	2415	NR_003708	100124538	Hs.693445	NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
0.25028-22	chr6	125919409	125919908	+	0	NA	Intergenic	L2c|LINE|L2	-75841	NR_038906	643623	Hs.520367	NR_038906	ENSG00000224506	LOC643623	-	uncharacterized LOC643623	ncRNA
1.04025-8	chr1	153721831	153722330	+	0	NA	intron (NM_023015, intron 6 of 29)	intron (NM_023015, intron 6 of 29)	21537	NM_001324475	65123	Hs.438723	NM_023015	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A|SOSSA	integrator complex subunit 3	protein-coding
0.840728-10	chr14	45671048	45671547	+	0	NA	Intergenic	LTR41B|LTR|ERVL	51308	NM_018353	55320	Hs.732769	NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
0.899095-15	chr12	122326312	122326811	+	0	NA	promoter-TSS (NM_001261400)	promoter-TSS (NM_001261400)	-44	NM_001171993	3242	Hs.2899	NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
0.510982-21	chr19	14359312	14359811	+	0	NA	Intergenic	Intergenic	-42564	NM_001008701	22859	Hs.94229	NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
0.731433-8	chr22	41444743	41445242	+	0	NA	Intergenic	Intergenic	24733	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
0.798767-3	chr13	38924098	38924597	+	0	NA	exon (NM_001286704, exon 2 of 6)	exon (NM_001286704, exon 2 of 6)	439	NM_016617	51569	Hs.643655	NM_016617	ENSG00000120686	UFM1	BM-002|C13orf20	ubiquitin fold modifier 1	protein-coding
6.0206-11	chr18	77905270	77905769	+	0	NA	promoter-TSS (NR_028339)	promoter-TSS (NR_028339)	-288	NR_028339	100130522	Hs.352602	NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
0.0612309-32	chr1	156720033	156720532	+	0	NA	intron (NM_001319188, intron 1 of 6)	intron (NM_001319188, intron 1 of 6)	803	NM_001319188	3068	Hs.743948	NM_004494	ENSG00000143321	HDGF	HMG1L2	hepatoma-derived growth factor	protein-coding
14.9485-10	chr9	33415464	33415963	+	0	NA	Intergenic	Intergenic	-13033	NM_001318156	364	Hs.455323	NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
1.42065-25	chr5	149989864	149990363	+	0	NA	intron (NM_001166208, intron 1 of 2)	MIRb|SINE|MIR	-7093	NM_001166209	11346	Hs.435228	NM_007286	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
18.729-2	chr12	64076375	64076874	+	0	NA	Intergenic	Intergenic	-14270	NM_173812	283417	Hs.533644	NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
0.338583-13	chr7	100033527	100034026	+	0	NA	exon (NM_001346938, exon 1 of 3)	exon (NM_001346938, exon 1 of 3)	320	NM_001346938	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
1.48742-2	chr15	69168091	69168590	+	0	NA	intron (NR_031680, intron 2 of 4)	intron (NR_031680, intron 2 of 4)	52037	NR_031680	100313884		NR_031680	ENSG00000221616	MIR548H4	MIR548H-4|MIRN548H4|hsa-mir-548h-4	microRNA 548h-4	ncRNA
2.43364-15	chr8	41909528	41910027	+	0	NA	promoter-TSS (NM_001305878)	promoter-TSS (NM_001305878)	-233	NM_001305878	7994	Hs.491577	NM_006766	ENSG00000083168	KAT6A	MOZ|MRD32|MYST-3|MYST3|RUNXBP2|ZC2HC6A|ZNF220	lysine acetyltransferase 6A	protein-coding
0.609802-23	chr14	81926561	81927060	+	0	NA	Intergenic	Intergenic	-10309	NR_109999	100506700	Hs.116304	NR_109999	ENSG00000258675	LOC100506700	-	uncharacterized LOC100506700	ncRNA
1.22053-26	chr1	109655202	109655701	+	0	NA	intron (NM_001122961, intron 1 of 4)	intron (NM_001122961, intron 1 of 4)	1028	NM_001122961	127003	Hs.446962	NM_001122961	ENSG00000179902	C1orf194	-	chromosome 1 open reading frame 194	protein-coding
2.49492-8	chr15	93383331	93383830	+	0	NA	Intergenic	MIR|SINE|MIR	-42493	NR_037600	100507217	Hs.622504	NR_037600		LINC01578	-	long intergenic non-protein coding RNA 1578	ncRNA
2.51037-9	chr9	92250216	92251100	+	0	NA	Intergenic	Intergenic	-4040	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
15.7675-2	chr3	126184698	126185197	+	0	NA	intron (NM_001040653, intron 5 of 5)	intron (NM_001040653, intron 5 of 5)	9815	NR_104249	79364	Hs.440049	NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
3.59519-10	chr14	69748129	69748628	+	0	NA	intron (NM_020692, intron 1 of 15)	intron (NM_020692, intron 1 of 15)	21697	NM_020692	57452	Hs.21035	NM_020692	ENSG00000100626	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
24.5593-2	chr4	127279129	127279628	+	0	NA	Intergenic	LFSINE_Vert|SINE|SINE	850964	NR_031746	100302267		NR_031746	ENSG00000283550	MIR2054	hsa-mir-2054	microRNA 2054	ncRNA
0.0656377-15	chrX	39767433	39767932	+	0	NA	Intergenic	Intergenic	189037	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
1.81774-12	chr5	16178607	16179106	+	0	NA	intron (NM_001102562, intron 1 of 3)	intron (NM_001102562, intron 1 of 3)	1041	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane associated ring-CH-type finger 11	protein-coding
12.3582	chr3	197457866	197458365	+	0	NA	intron (NM_001145642, intron 1 of 20)	SVA_D|Other|Other	5682	NM_014687	9711	Hs.478868	NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	RUN and cysteine rich domain containing beclin 1 interacting protein	protein-coding
12.0135-3	chr22	21794330	21794829	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	22886	NM_015094	23119	Hs.632767	NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
16.8613-5	chr15	29980831	29981330	+	0	NA	Intergenic	MIR|SINE|MIR	13941	NR_135221	100130111	Hs.525720	NR_135221	ENSG00000256802	LOC100130111	-	uncharacterized LOC100130111	ncRNA
2.74088-6	chr10	23105188	23105687	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-101934	NM_005028	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
0.634863-6	chr3	133291871	133292370	+	0	NA	promoter-TSS (NM_001134422)	promoter-TSS (NM_001134422)	-314	NM_017548	55573	Hs.518265	NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
4.44906-3	chr10	73571671	73572170	+	0	NA	5' UTR (NM_001171935, exon 1 of 5)	5' UTR (NM_001171935, exon 1 of 5)	280	NM_001171935	64072	Hs.656032	NM_022124	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin related 23	protein-coding
1.39662-19	chr5	68665134	68665826	+	0	NA	promoter-TSS (NM_133342)	promoter-TSS (NM_133342)	-71	NM_016283	102157402	Hs.653163	NM_016283	ENSG00000085231	AK6	AD-004|CGI-137|CINAP|CIP|hCINAP	adenylate kinase 6	protein-coding
1.15771-3	chr2	159949825	159950324	+	0	NA	intron (NM_033394, intron 3 of 26)	intron (NM_033394, intron 3 of 26)	-93272	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
2.78189-14	chr10	95462119	95462618	+	0	NA	promoter-TSS (NM_145246)	promoter-TSS (NM_145246)	-39	NM_001347712	118924	Hs.586650	NM_145246	ENSG00000148690	FRA10AC1	C10orf4|F26C11.1-like|FRA10A	FRA10A associated CGG repeat 1	protein-coding
1.71985-2	chr1	1981456	1981955	+	0	NA	promoter-TSS (NM_002744)	promoter-TSS (NM_002744)	-196	NR_135509	105378591	Hs.371879	NR_135509	ENSG00000226969	LOC105378591	-	uncharacterized LOC105378591	ncRNA
0.486625-10	chr8	123651015	123651514	+	0	NA	Intergenic	Intergenic	55081	NR_126348	104266958	Hs.575540	NR_126348	ENSG00000253819	LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
4.13413	chr11	116969021	116969520	+	0	NA	promoter-TSS (NM_001281748)	promoter-TSS (NM_001281748)	-139	NM_025164	23387	Hs.167451	NM_025164	ENSG00000160584	SIK3	L19|QSK|SIK-3	SIK family kinase 3	protein-coding
0.985417-3	chr6	56124441	56124940	+	0	NA	intron (NM_001318752, intron 1 of 28)	intron (NM_001318752, intron 1 of 28)	-12312	NR_134851	81578	Hs.47629	NM_030820	ENSG00000124749	COL21A1	COLA1L|FP633	collagen type XXI alpha 1 chain	protein-coding
8.44664-4	chr18	66465107	66465606	+	0	NA	promoter-TSS (NM_024781)	promoter-TSS (NM_024781)	39	NM_024781	79839	Hs.280781	NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
0.209071-23	chr3	47323753	47324252	+	0	NA	promoter-TSS (NM_025010)	promoter-TSS (NM_025010)	-328	NM_025010	23276	Hs.517946	NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
0.0305075-71	chr9	79062262	79062761	+	0	NA	intron (NM_001097634, intron 1 of 2)	intron (NM_001097634, intron 1 of 2)	5929	NM_001097634	2650	Hs.521568	NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding
0.141246	chrX	118109241	118109740	+	0	NA	promoter-TSS (NM_001289109)	promoter-TSS (NM_001289109)	-805	NM_001289109	79836	Hs.144266	NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
2.02732-13	chr12	33175073	33175572	+	0	NA	Intergenic	SVA_C|Other|Other	-125542	NM_004572	5318	Hs.164384	NM_004572	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
4.25969-12	chr13	100634170	100634669	+	0	NA	exon (NM_007129, exon 1 of 3)	exon (NM_007129, exon 1 of 3)	393	NM_007129	7546	Hs.653700	NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
0.296531-89	chr6	170604809	170605308	+	0	NA	intron (NM_001286380, intron 1 of 10)	CpG	649	NM_001286380	84498	Hs.369522	NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|dJ894D12.1	family with sequence similarity 120B	protein-coding
4.53457-2	chr1	156528412	156528911	+	0	NA	intron (NM_178229, intron 11 of 37)	SVA_E|Other|Other	13735	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
15.986-2	chr1	70952978	70953477	+	0	NA	Intergenic	Intergenic	76326	NM_153742	1491	Hs.19904	NM_001902	ENSG00000116761	CTH	-	cystathionine gamma-lyase	protein-coding
25.9517	chr6	9504064	9504563	+	0	NA	Intergenic	Intergenic	851871	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
9.39302-15	chr2	27309760	27310259	+	0	NA	TTS (NM_007046)	TTS (NM_007046)	398	NM_000221	3795	Hs.567297	NM_000221	ENSG00000138030	KHK	-	ketohexokinase	protein-coding
9.24453-7	chr14	78047167	78047666	+	0	NA	intron (NM_004863, intron 2 of 11)	intron (NM_004863, intron 2 of 11)	35694	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
6.79854-7	chr1	54752882	54753381	+	0	NA	intron (NM_001009955, intron 4 of 16)	intron (NM_001009955, intron 4 of 16)	51015	NR_103541	619518	Hs.591438	NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
0.736576-3	chr14	50234175	50234674	+	0	NA	promoter-TSS (NM_014315)	promoter-TSS (NM_014315)	-363	NM_014315	23588	Hs.509264	NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
3.57535-3	chr2	208488981	208489480	+	0	NA	intron (NM_001330133, intron 1 of 3)	intron (NM_001330133, intron 1 of 3)	482	NM_001330137	151194	Hs.664764	NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase like 21A	protein-coding
4.7237	chr5	1417999	1418498	+	0	NA	intron (NM_001044, intron 6 of 14)	intron (NM_001044, intron 6 of 14)	27295	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 member 3	protein-coding
0.644927	chr17	43325237	43325736	+	0	NA	TTS (NM_005892)	TTS (NM_005892)	194	NR_110326	100133991	Hs.668927	NR_024434	ENSG00000267278	MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
0.419142-46	chr3	136950088	136950587	+	0	NA	Intergenic	Intergenic	273630	NM_144717	53833	Hs.61232	NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
4.28291-15	chr1	155804803	155805302	+	0	NA	intron (NM_001282861, intron 2 of 20)	SVA_D|Other|Other	22034	NM_001282860	54856	Hs.656361	NM_032292	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
5.83359-23	chr22	42258761	42259260	+	0	NA	intron (NM_004599, intron 1 of 18)	intron (NM_004599, intron 1 of 18)	29927	NM_004599	6721	Hs.443258	NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
4.98941-2	chr12	31004312	31004811	+	0	NA	Intergenic	LTR13_|LTR|ERVK	55946	NR_040245	100287314	Hs.355210	NR_040245	ENSG00000235884	LINC00941	-	long intergenic non-protein coding RNA 941	ncRNA
4.59671-3	chr6	70676163	70676662	+	0	NA	intron (NM_001858, intron 11 of 50)	SVA_B|Other|Other	99964	NM_001858	1310	Hs.444842	NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
0.685421-14	chr3	72201930	72202429	+	0	NA	intron (NR_038221, intron 1 of 2)	intron (NR_038221, intron 1 of 2)	1771	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
2.51037-15	chr10	7603066	7603565	+	0	NA	3' UTR (NM_030569, exon 15 of 15)	3' UTR (NM_030569, exon 15 of 15)	58321	NM_032817	80760	Hs.498586	NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain family member 5	protein-coding
2.62013-19	chr9	33165724	33166223	+	0	NA	promoter-TSS (NR_108109)	promoter-TSS (NR_108109)	-973	NR_108109	101929639	Hs.545818	NR_108108	ENSG00000233554	B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
0.0568285-9	chr1	167408751	167409250	+	0	NA	intron (NM_198053, intron 2 of 7)	CpG-1902	78847	NM_198053	919	Hs.156445	NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
1.42065-20	chr13	110676552	110677051	+	0	NA	Intergenic	Intergenic	-28831	NR_126387	104355146	Hs.508690	NR_126387	ENSG00000231428	LINC00396	-	long intergenic non-protein coding RNA 396	ncRNA
1.35489-31	chr5	111696829	111697328	+	0	NA	intron (NM_001347888, intron 1 of 5)	SVA_B|Other|Other	57935	NM_022140	64097	Hs.584954	NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
4.17937	chr10	49684243	49684742	+	0	NA	intron (NM_001347735, intron 3 of 8)	intron (NM_001347735, intron 3 of 8)	17200	NM_001256026	58504	Hs.655672	NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
1.85752-5	chr7	26904074	26904573	+	0	NA	promoter-TSS (NM_003930)	promoter-TSS (NM_003930)	39	NM_003930	8935	Hs.200770	NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
0.291884-4	chr19	1249543	1250042	+	0	NA	intron (NM_177401, intron 1 of 7)	CpG	1240	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
2.64401-10	chrX	71549725	71550224	+	0	NA	intron (NR_051952, intron 9 of 9)	L1MB7|LINE|L1	-22937	NM_001144886	4435	Hs.40403	NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
0.888424-45	chr4	74904046	74904545	+	0	NA	exon (NM_002090, exon 1 of 4)	exon (NM_002090, exon 1 of 4)	195	NM_002090	2921	Hs.89690	NM_002090	ENSG00000163734	CXCL3	CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3	C-X-C motif chemokine ligand 3	protein-coding
1.57391-18	chr1	221612653	221613152	+	0	NA	Intergenic	Intergenic	-103264	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
4.34152-8	chr1	28879231	28879730	+	0	NA	promoter-TSS (NR_003109)	promoter-TSS (NR_003109)	-49	NM_017846	54952	Hs.533626	NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
2.1254-20	chr6	1756821	1757320	+	0	NA	intron (NM_001500, intron 7 of 10)	MLT1H|LTR|ERVL-MaLR	146389	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
4.80172-2	chr17	17722927	17723426	+	0	NA	intron (NM_001005291, intron 3 of 19)	intron (NM_001005291, intron 3 of 19)	3802	NM_001321096	6720	Hs.592123	NM_004176	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|SREBP1a|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
9.87163-19	chrUn_gl000216	136528	137027	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
10.11	chr18	12092637	12093136	+	0	NA	promoter-TSS (NM_001277333)	promoter-TSS (NM_001277333)	-962	NM_001277333	342850	Hs.448906	NM_001277333	ENSG00000181626	ANKRD62	DKFZp779B1634	ankyrin repeat domain 62	protein-coding
3.77786-5	chr19	30432706	30433205	+	0	NA	promoter-TSS (NR_045557)	promoter-TSS (NR_045557)	-191	NR_045557	8725	Hs.466391	NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1, prefoldin like chaperone	protein-coding
0.190881-29	chr8	41570387	41570886	+	0	NA	intron (NM_000037, intron 16 of 42)	intron (NM_000037, intron 16 of 42)	-47832	NM_020480	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
3.35358-5	chr14	50234980	50235479	+	0	NA	exon (NM_014315, exon 1 of 13)	exon (NM_014315, exon 1 of 13)	442	NM_014315	23588	Hs.509264	NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
0.438316-7	chr3	109491749	109492248	+	0	NA	Intergenic	Intergenic	170323	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
5.11449-2	chr1	15611089	15611588	+	0	NA	intron (NM_052929, intron 3 of 30)	intron (NM_052929, intron 3 of 30)	37570	NM_052929	114827	Hs.659997	NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
1.83759-2	chr16	28676768	28677267	+	0	NA	Intergenic	SVA_D|Other|Other	-22862	NM_001199142	8663	Hs.567374	NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
10.2919	chr7	131933961	131934460	+	0	NA	intron (NM_020911, intron 4 of 31)	intron (NM_020911, intron 4 of 31)	-11410	NR_134565	101928807	Hs.552131	NR_134565		LOC101928807	-	uncharacterized LOC101928807	ncRNA
9.82967-11	chr8	95907241	95908712	+	0	NA	promoter-TSS (NM_057749)	promoter-TSS (NM_057749)	-494	NM_057749	9134	Hs.521693	NM_004702	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding
0.11441-18	chr15	25914998	25915497	+	0	NA	Intergenic	Intergenic	178725	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
5.60667-3	chr7	37107558	37108057	+	0	NA	intron (NM_001206482, intron 15 of 21)	intron (NM_001206482, intron 15 of 21)	70406	NR_104120	100861514	Hs.627775	NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
11.2378	chr11	89594288	89594787	+	0	NA	Intergenic	SVA_D|Other|Other	14648	NM_001164397	642446	Hs.730588	NM_001164397	ENSG00000189253	TRIM64B	-	tripartite motif containing 64B	protein-coding
0.0966115-12	chr4	27086410	27086909	+	0	NA	Intergenic	Intergenic	-132442	NR_125921	101929199	Hs.570815	NR_125921	ENSG00000249699	LOC101929199	-	uncharacterized LOC101929199	ncRNA
1.39662-23	chr3	172364221	172364720	+	0	NA	intron (NM_001146278, intron 1 of 3)	intron (NM_001146278, intron 1 of 3)	64538	NM_001146276	57552	Hs.444099	NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
6.6354	chr18	267457	267956	+	0	NA	intron (NM_005131, intron 1 of 20)	intron (NM_005131, intron 1 of 20)	353	NM_005131	9984	Hs.712543	NM_005131	ENSG00000079134	THOC1	HPR1|P84|P84N5	THO complex 1	protein-coding
1.91114-9	chr11	107728765	107729513	+	0	NA	intron (NM_017515, intron 1 of 7)	CpG	775	NM_017515	54733	Hs.524014	NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
5.60667-7	chr15	55072927	55073426	+	0	NA	Intergenic	SVA_B|Other|Other	-275769	NR_135679	105370829	Hs.174934	NR_135679	ENSG00000260937	LOC105370829	-	uncharacterized LOC105370829	ncRNA
1.95861-7	chr6	108477706	108478205	+	0	NA	Intergenic	Intergenic	-9307	NM_003269	7101	Hs.157688	NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
4.15669-3	chr3	187718105	187718604	+	0	NA	Intergenic	Intergenic	-24159	NR_135538	105374266	Hs.570518	NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
1.79799-17	chr5	112942103	112942602	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	92993	NM_022828	64848	Hs.231942	NM_022828	ENSG00000047188	YTHDC2	CAHL	YTH domain containing 2	protein-coding
2.62013-12	chr4	85735494	85735993	+	0	NA	intron (NM_014991, intron 13 of 67)	MER44B|DNA|TcMar-Tigger	151801	NM_014991	23001	Hs.480116	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
5.80044-4	chr1	32083531	32084030	+	0	NA	intron (NM_001525, intron 1 of 8)	CpG	479	NM_001525	3061	Hs.388226	NM_001525	ENSG00000121764	HCRTR1	OX1R	hypocretin receptor 1	protein-coding
3.01899-13	chr9_gl000199_random	160518	161017	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2.25483	chr6	10429776	10430275	+	0	NA	non-coding (NR_027793, exon 3 of 3)	non-coding (NR_027793, exon 3 of 3)	-4537	NR_132993	106660610	Hs.575376	NR_132993	ENSG00000229401	MIR5689HG	-	MIR5689 host gene	ncRNA
0.599818-5	chr9	107921877	107922376	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-84760	NM_001330731	23446	Hs.573495	NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CTL1	solute carrier family 44 member 1	protein-coding
0.177288-4	chr3	133613691	133614190	+	0	NA	intron (NM_016577, intron 1 of 7)	CpG	751	NM_016577	51560	Hs.715344	NM_016577	ENSG00000154917	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
1.7134-2	chr20	61810442	61810941	+	0	NA	TTS (NR_029670)	TTS (NR_029670)	839	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
0.5061-22	chr22	36682415	36682914	+	0	NA	TTS (NR_106877)	TTS (NR_106877)	289	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
5.70248-13	chr16	87902520	87903019	+	0	NA	exon (NM_003486, exon 1 of 10)	exon (NM_003486, exon 1 of 10)	336	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
4.17937-7	chr7	99698009	99698508	+	0	NA	promoter-TSS (NM_004722)	promoter-TSS (NM_004722)	145	NM_182776	4176	Hs.438720	NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104	minichromosome maintenance complex component 7	protein-coding
1.11259-5	chr1	16387869	16388368	+	0	NA	intron (NM_182623, intron 4 of 6)	LTR16A1|LTR|ERVL	12009	NM_182623	348487	Hs.126825	NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
1.44481-10	chr12	110717413	110717912	+	0	NA	Intergenic	Intergenic	-1370	NM_170665	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
19.3554-5	chr18	55106005	55106504	+	0	NA	intron (NM_004852, intron 1 of 1)	CpG	3337	NM_004852	9480	Hs.194725	NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
0.296531-57	chr12	128933693	128934192	+	0	NA	intron (NM_001136103, intron 2 of 8)	intron (NM_001136103, intron 2 of 8)	155305	NR_037406	100500817		NR_037406	ENSG00000265635	MIR3612	-	microRNA 3612	ncRNA
0.419142	chr2	26972682	26973181	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-14211	NM_017877	54978	Hs.1594	NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
0.545314-22	chr7	150943975	150944474	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	1525	NM_001003801	6604	Hs.647067	NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
0.371573-11	chr5	138288975	138289474	+	0	NA	intron (NM_001037633, intron 8 of 10)	intron (NM_001037633, intron 8 of 10)	78135	NM_001324010	1495	Hs.445981	NM_001903	ENSG00000044115	CTNNA1	CAP102|MDPT2	catenin alpha 1	protein-coding
2.61219-12	chr14	54671159	54671658	+	0	NA	Intergenic	SVA_D|Other|Other	-192178	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
1.03474-16	chr7	73121509	73122008	+	0	NA	intron (NM_001165903, intron 3 of 9)	intron (NM_001165903, intron 3 of 9)	-3889	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
0.376307-13	chr2	150078391	150078890	+	0	NA	Intergenic	Intergenic	103952	NM_001317002	130576	Hs.357567	NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
0.996329-4	chr1	204308087	204308586	+	0	NA	intron (NM_014935, intron 1 of 22)	MLT1H1|LTR|ERVL-MaLR	20721	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
7.05534-2	chr4	68566731	68567230	+	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	-16	NR_015439	550112	Hs.479879	NR_015439	ENSG00000248049	UBA6-AS1	-	UBA6 antisense RNA 1 (head to head)	ncRNA
8.29738-5	chr2	182542690	182543189	+	0	NA	exon (NM_002500, exon 2 of 2)	exon (NM_002500, exon 2 of 2)	2453	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
5.51294-2	chr1	161707352	161707851	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-11957	NM_007240	11266	Hs.416216	NM_007240	ENSG00000081721	DUSP12	DUSP1|YVH1	dual specificity phosphatase 12	protein-coding
0.132283-16	chr3	149363905	149364404	+	0	NA	intron (NM_015472, intron 2 of 6)	Charlie10|DNA|hAT-Charlie	11658	NM_001168280	25937	Hs.477921	NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
0.414361-29	chrX	15693508	15694007	+	0	NA	intron (NR_026551, intron 1 of 4)	CpG	718	NR_026551	340591	Hs.732244	NR_026551	ENSG00000186312	CA5BP1	CA5BL|CA5BP|PRO2325	carbonic anhydrase 5B pseudogene 1	pseudo
6.00326-11	chr5	1111852	1112351	+	0	NA	promoter-TSS (NM_006598)	promoter-TSS (NM_006598)	71	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
7.56962-14	chr3	38105467	38105966	+	0	NA	intron (NM_001321153, intron 6 of 36)	SVA_B|Other|Other	25020	NM_007335	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
6.75718-8	chr12	3475033	3475532	+	0	NA	Intergenic	CpG	-15233	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19.914-3	chr2	15383155	15383654	+	0	NA	intron (NM_015909, intron 44 of 51)	MLT1J1|LTR|ERVL-MaLR	318068	NM_015909	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
1.40261-9	chr2	131594153	131594652	+	0	NA	Intergenic	CpG	-79822	NM_015320	50649	Hs.469935	NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
0.301184-18	chr2	85664610	85665109	+	0	NA	TTS (NM_201594)	TTS (NM_201594)	18805	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
13.9686	chr1	53829005	53829504	+	0	NA	Intergenic	LTR33|LTR|ERVL	35349	NR_131923	105378732	Hs.118609	NR_131923	ENSG00000225675	LINC01771	-	long intergenic non-protein coding RNA 1771	ncRNA
0.861861-4	chr2	85992119	85992618	+	0	NA	intron (NM_032827, intron 2 of 2)	intron (NM_032827, intron 2 of 2)	11459	NM_032827	84913	Hs.135569	NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
4.31798-2	chr13	52570194	52570693	+	0	NA	intron (NM_001330578, intron 1 of 19)	intron (NM_001330578, intron 1 of 19)	15187	NM_000053	540	Hs.492280	NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
1.36677-6	chr3	100266804	100267303	+	0	NA	intron (NM_018004, intron 1 of 5)	intron (NM_018004, intron 1 of 5)	55590	NM_018004	55076	Hs.658956	NM_018004	ENSG00000181458	TMEM45A	DERP7|DNAPTP4	transmembrane protein 45A	protein-coding
1.12946-12	chr14	59239836	59240335	+	0	NA	Intergenic	Intergenic	-54921	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
5.22879-4	chr2	112720911	112721410	+	0	NA	intron (NM_006343, intron 4 of 18)	LTR5_Hs|LTR|ERVK	64969	NM_006343	10461	Hs.306178	NM_006343	ENSG00000153208	MERTK	MER|RP38|Tyro12|c-Eyk|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
5.85027-5	chr6	40875075	40875574	+	0	NA	intron (NR_110873, intron 1 of 5)	intron (NR_110873, intron 1 of 5)	115695	NR_110873	101929555	Hs.552555	NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
0.447935-8	chr19	1383493	1383992	+	0	NA	promoter-TSS (NM_024407)	promoter-TSS (NM_024407)	-141	NM_024407	374291	Hs.211914	NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
0.777937-13	chrX	39196570	39197069	+	0	NA	Intergenic	Intergenic	-10203	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
0.447935-4	chr11	45430685	45431184	+	0	NA	Intergenic	Intergenic	37986	NR_122071	399886	Hs.559970	NR_122071	ENSG00000255267	LOC399886	-	uncharacterized LOC399886	ncRNA
1.12946-15	chr16	53165222	53165721	+	0	NA	intron (NM_025134, intron 1 of 38)	CpG	-24367	NM_001308319	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
7.67004-4	chr9	1837366	1837865	+	0	NA	Intergenic	Intergenic	-177604	NM_001289397	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
7.54487	chr3	161067606	161068105	+	0	NA	intron (NM_001320679, intron 2 of 3)	intron (NM_001320679, intron 2 of 3)	22016	NM_001040100	165679	Hs.369104	NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
10.4624	chr17	46388257	46388756	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	16797	NR_131240	105371807	Hs.661105	NR_131239	ENSG00000235300	THRA1/BTR	-	uncharacterized LOC105371807	ncRNA
7.69551-4	chr15	40540458	40540957	+	0	NA	intron (NM_001276718, intron 2 of 9)	intron (NM_001276718, intron 2 of 9)	4403	NM_001039905	644809	Hs.631718	NM_001039905		C15orf56	-	chromosome 15 open reading frame 56	protein-coding
1.78486-5	chr2	122050926	122051425	+	0	NA	Intergenic	Intergenic	-8397	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
20.1637	chr6	101611390	101611889	+	0	NA	Intergenic	Intergenic	-235222	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
1.83759-4	chr4	5957145	5957644	+	0	NA	Intergenic	Intergenic	-32339	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	mir-378d-1	microRNA 378d-1	ncRNA
1.53663-35	chr17	79490666	79491165	+	0	NA	Intergenic	Intergenic	-4502	NM_001077182	25794	Hs.118555	NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
1.28427-15	chr1	181058096	181058595	+	0	NA	exon (NM_016545, exon 1 of 1)	exon (NM_016545, exon 1 of 1)	707	NM_016545	51278	Hs.15725	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
0.909791-4	chr2	207256800	207257299	+	0	NA	Intergenic	Intergenic	-51319	NM_003812	8745	Hs.370287	NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
0.0877392-28	chr2	113240602	113241101	+	0	NA	intron (NM_153712, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	1108	NM_153712	150465	Hs.358997	NM_153712	ENSG00000114999	TTL	-	tubulin tyrosine ligase	protein-coding
2.83162-5	chr2	221363965	221364464	+	0	NA	Intergenic	Intergenic	-592928	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
0.0174066-16	chr7	20320433	20320932	+	0	NA	Intergenic	Intergenic	-15649	NR_110117	101927769	Hs.256080	NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
1.77178-9	chr8	81110183	81110682	+	0	NA	Intergenic	Intergenic	-26538	NM_005079	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
0.788339-2	chr9	140117745	140118244	+	0	NA	Intergenic	CpG	-1093	NM_199001	375791	Hs.495540	NM_199001	ENSG00000197191	CYSRT1	C9orf169	cysteine rich tail 1	protein-coding
7.82516	chr12	105379973	105380472	+	0	NA	exon (NM_152318, exon 1 of 4)	exon (NM_152318, exon 1 of 4)	124	NM_152318	121053	Hs.295563	NM_152318	ENSG00000151131	C12orf45	-	chromosome 12 open reading frame 45	protein-coding
1.85752-14	chr13	88325765	88326264	+	0	NA	intron (NM_015567, intron 1 of 1)	intron (NM_015567, intron 1 of 1)	1144	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding
0.48177-7	chr12	102868096	102868595	+	0	NA	intron (NM_001111285, intron 2 of 3)	intron (NM_001111285, intron 2 of 3)	4084	NM_001111284	3479	Hs.160562	NM_000618	ENSG00000017427	IGF1	IGF-I|IGFI|MGF	insulin like growth factor 1	protein-coding
0.241089-18	chr19	11593246	11593745	+	0	NA	TTS (NM_138783)	TTS (NM_138783)	-1692	NM_001420	1995	Hs.1701	NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
1.29596-10	chr12	132983987	132984486	+	0	NA	Intergenic	CpG	77800	NR_120467	101928416		NR_120467	ENSG00000255916	LOC101928416	-	uncharacterized LOC101928416	ncRNA
3.9794-15	chr8	52447821	52448320	+	0	NA	intron (NM_144651, intron 4 of 22)	SVA_E|Other|Other	273935	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin like	protein-coding
4.74955-2	chr14	20975304	20975803	+	0	NA	Intergenic	SVA_E|Other|Other	-3078	NM_001012975	338879	Hs.451057	NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
9.78811-2	chr11	47119381	47119880	+	0	NA	intron (NM_001003678, intron 3 of 8)	SVA_F|Other|Other	79046	NM_001242832	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
1.81774-2	chr5	64437243	64437742	+	0	NA	Intergenic	L1P4|LINE|L1	340255	NR_135689	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
10.5948	chr12	52416679	52417178	+	0	NA	intron (NM_001202233, intron 1 of 7)	intron (NM_001202233, intron 1 of 7)	312	NM_001202233	3164	Hs.524430	NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
2.8735-6	chr19	23715619	23716118	+	0	NA	Intergenic	SVA_C|Other|Other	-116992	NR_126449	104472717	Hs.162105	NR_126448	ENSG00000269416	LINC01224	-	long intergenic non-protein coding RNA 1224	ncRNA
2.1254-9	chr2	20647485	20647984	+	0	NA	exon (NM_004040, exon 1 of 1)	exon (NM_004040, exon 1 of 1)	902	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
10.2228-2	chr5	132236733	132237232	+	0	NA	intron (NM_014423, intron 7 of 20)	intron (NM_014423, intron 7 of 20)	27624	NM_052971	116842	Hs.337588	NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
2.50264-3	chr10	101945522	101946021	+	0	NA	promoter-TSS (NM_006459)	promoter-TSS (NM_006459)	-37	NM_001347860	10613	Hs.150087	NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
0.136762-20	chr11	128027538	128028037	+	0	NA	Intergenic	Intergenic	364418	NM_001162422	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
1.38466-12	chr16	56435381	56435880	+	0	NA	intron (NM_001323512, intron 8 of 14)	intron (NM_001323512, intron 8 of 14)	23277	NM_001323511	267	Hs.295137	NM_001144	ENSG00000159461	AMFR	GP78|RNF45	autocrine motility factor receptor	protein-coding
0.91515-9	chr6	144607177	144607676	+	0	NA	Intergenic	CpG	-5447	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
0.209071-32	chr13	44875148	44875647	+	0	NA	Intergenic	Intergenic	-72389	NM_001346980	387923	Hs.377972	NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
8.79426-17	chr1	165223597	165224096	+	0	NA	intron (NM_177398, intron 3 of 8)	intron (NM_177398, intron 3 of 8)	101632	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
22.1753	chr2	10483718	10484630	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	13885	NM_001258357	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
4.11168-9	chr5	34489517	34490016	+	0	NA	Intergenic	Intergenic	-166667	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.428718-4	chr1	100111492	100111991	+	0	NA	5' UTR (NM_017734, exon 1 of 8)	5' UTR (NM_017734, exon 1 of 8)	310	NM_017734	54873	Hs.483993	NM_017734	ENSG00000099260	PALMD	C1orf11|PALML	palmdelphin	protein-coding
0.0305075-51	chr5	14922515	14923014	+	0	NA	Intergenic	Intergenic	-50877	NM_054027	56172	Hs.156727	NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
5.21434-13	chr7	84628700	84629199	+	0	NA	exon (NM_152754, exon 17 of 17)	exon (NM_152754, exon 17 of 17)	122298	NM_152754	223117	Hs.201340	NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
3.90406-12	chr17	40463472	40463971	+	0	NA	3' UTR (NM_003152, exon 20 of 20)	3' UTR (NM_003152, exon 20 of 20)	23647	NM_001288719	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
12.0343-3	chr16	57550172	57550671	+	0	NA	intron (NM_033212, intron 6 of 8)	intron (NM_033212, intron 6 of 8)	20056	NM_033212	92922	Hs.644611	NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
0.105502	chr11	44346641	44347140	+	0	NA	Intergenic	L2a|LINE|L2	-15174	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
63.4679	chr7	124918537	124919036	+	0	NA	intron (NR_110188, intron 3 of 8)	MLT1D|LTR|ERVL-MaLR	-14441	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
1.4752-16	chr11	60598390	60598889	+	0	NA	Intergenic	Intergenic	-10790	NM_024098	79080	Hs.4253	NM_024098	ENSG00000110104	CCDC86	-	coiled-coil domain containing 86	protein-coding
0.00869459-17	chr1	55047282	55047781	+	0	NA	intron (NM_147161, intron 1 of 15)	intron (NM_147161, intron 1 of 15)	33724	NM_147161	26027	Hs.745173	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
0.0966115-3	chr1	91966682	91967181	+	0	NA	intron (NM_001134420, intron 1 of 11)	CpG	266	NM_001134420	8317	Hs.533573	NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
3.18759-7	chr13	100784280	100784779	+	0	NA	intron (NM_001127692, intron 3 of 22)	L1MD2|LINE|L1	43260	NM_000282	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase alpha subunit	protein-coding
0.624821-6	chr7	47848919	47849418	+	0	NA	exon (NM_138295, exon 51 of 57)	exon (NM_138295, exon 51 of 57)	14279	NM_001302627	80099	Hs.287647	NM_025031		C7orf69	-	chromosome 7 open reading frame 69	protein-coding
0.362122-5	chr11	66034794	66035293	+	0	NA	3' UTR (NM_001134775, exon 16 of 16)	3' UTR (NM_001134775, exon 16 of 16)	-1013	NM_030981	81876	Hs.300816	NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
9.39302-21	chr22	24372641	24373140	+	0	NA	promoter-TSS (NM_001144931)	promoter-TSS (NM_001144931)	-227	NM_001144931	391322	Hs.678440	NM_001144931		LOC391322	-	D-dopachrome tautomerase-like	protein-coding
1.51195-25	chr11	19748677	19749176	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	-12708	NR_015384	100126784	Hs.64341	NR_015384		LOC100126784	-	uncharacterized LOC100126784	ncRNA
8.041	chr12	63108278	63108777	+	0	NA	intron (NM_020700, intron 6 of 9)	intron (NM_020700, intron 6 of 9)	111061	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
0.472076-14	chr14	50100824	50101323	+	0	NA	exon (NM_018139, exon 1 of 3)	exon (NM_018139, exon 1 of 3)	875	NM_018139	55172	Hs.231761	NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
0.0921731-10	chr16	84299933	84300432	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-26826	NM_172347	93107	Hs.335877	NM_133490	ENSG00000168418	KCNG4	KV6.3|KV6.4	potassium voltage-gated channel modifier subfamily G member 4	protein-coding
1.24939-5	chr22	42342856	42343355	+	0	NA	promoter-TSS (NM_001304370)	promoter-TSS (NM_001304370)	63	NM_001304371	79019	Hs.208912	NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
3.99027-20	chr4	48907296	48907795	+	0	NA	intron (NM_001286773, intron 1 of 5)	intron (NM_001286773, intron 1 of 5)	1300	NM_001014446	132299	Hs.95835	NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
10.5799-9	chr3	111757693	111758192	+	0	NA	promoter-TSS (NR_026734)	promoter-TSS (NR_026734)	-523	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
0.070049-39	chr16	56390235	56390734	+	0	NA	3' UTR (NM_020988, exon 9 of 9)	3' UTR (NM_020988, exon 9 of 9)	68423	NM_001323511	267	Hs.295137	NM_001144	ENSG00000159461	AMFR	GP78|RNF45	autocrine motility factor receptor	protein-coding
1.22053-6	chr17	2591537	2592036	+	0	NA	TTS (NM_015229)	TTS (NM_015229)	4427	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
0.979971-2	chr11	79148454	79148953	+	0	NA	intron (NM_001098816, intron 1 of 33)	CpG	2992	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4	teneurin transmembrane protein 4	protein-coding
4.4855-8	chr10	45428125	45428624	+	0	NA	intron (NM_001345926, intron 2 of 3)	intron (NM_001345926, intron 2 of 3)	21610	NM_001123376	643236	Hs.292788	NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
1.31944	chr6	106533900	106534399	+	0	NA	promoter-TSS (NM_001198)	promoter-TSS (NM_001198)	-46	NM_001198	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
0.338583-5	chr2	58467683	58468182	+	0	NA	intron (NM_001114636, intron 1 of 13)	intron (NM_001114636, intron 1 of 13)	583	NM_018062	55120	Hs.631890	NM_018062	ENSG00000115392	FANCL	FAAP43|PHF9|POG	Fanconi anemia complementation group L	protein-coding
8.56985-8	chr1	153939589	153940534	+	0	NA	promoter-TSS (NR_045658)	promoter-TSS (NR_045658)	147	NM_014437	27173	Hs.7854	NM_014437	ENSG00000143570	SLC39A1	ZIP1|ZIRTL	solute carrier family 39 member 1	protein-coding
1.95861-3	chr20	10413894	10414393	+	0	NA	intron (NM_170784, intron 1 of 5)	intron (NM_170784, intron 1 of 5)	744	NM_170784	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
9.62574-18	chr9	112777909	112778408	+	0	NA	intron (NM_147150, intron 6 of 9)	intron (NM_147150, intron 6 of 9)	-32720	NM_001004065	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding
5.45155-4	chr16	74607403	74607902	+	0	NA	intron (NM_012201, intron 1 of 26)	AluJb|SINE|Alu	33390	NR_027265	2734	Hs.109731	NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
33.7779-3	chr18	20713803	20714302	+	0	NA	promoter-TSS (NM_001256438)	promoter-TSS (NM_001256438)	-476	NM_001256438	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
1.50581-28	chr9	111305205	111305704	+	0	NA	Intergenic	Intergenic	312821	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
0.132283-29	chr3	124269195	124269694	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-34062	NM_001323000	8997	Hs.8004	NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
11.3371	chr3	160592388	160592887	+	0	NA	intron (NR_134243, intron 1 of 5)	MLT1G1|LTR|ERVL-MaLR	4251	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
2.83162-9	chr2	47270770	47271269	+	0	NA	intron (NM_020458, intron 15 of 19)	intron (NM_020458, intron 15 of 19)	-102025	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
16.5365-2	chr9	71795527	71796026	+	0	NA	intron (NM_201629, intron 1 of 20)	intron (NM_201629, intron 1 of 20)	6805	NM_201629	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
7.85156-12	chr4	189907470	189907969	+	0	NA	Intergenic	Intergenic	530987	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
8.8941-10	chr5	139018315	139018814	+	0	NA	Intergenic	Intergenic	-8320	NM_001317201	51523	Hs.189119	NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
8.60121-16	chr13	32802427	32802926	+	0	NA	exon (NM_023037, exon 40 of 61)	exon (NM_023037, exon 40 of 61)	83415	NM_001136571	646799	Hs.569254	NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1-like	protein-coding
0.145735-7	chr6	135501513	135502351	+	0	NA	promoter-TSS (NM_001161659)	promoter-TSS (NM_001161659)	-521	NR_134958	4602	Hs.606320	NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
0.570004-2	chr7	122149069	122149568	+	0	NA	intron (NM_001009571, intron 9 of 27)	intron (NM_001009571, intron 9 of 27)	189890	NM_139175	168433	Hs.126730	NM_139175	ENSG00000188050	RNF133	-	ring finger protein 133	protein-coding
4.20216-5	chr2	88752112	88752611	+	0	NA	promoter-TSS (NM_001135649)	promoter-TSS (NM_001135649)	-308	NM_001135649	344167	Hs.716722	NM_001135649	ENSG00000214336	FOXI3	-	forkhead box I3	protein-coding
0.145735-30	chr17	34985684	34986183	+	0	NA	Intergenic	Intergenic	27908	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
23.9686-3	chr3	70565168	70565667	+	0	NA	Intergenic	Intergenic	516522	NR_110000	101927152	Hs.382046	NR_110000	ENSG00000240405	SAMMSON	LINC01212	survival associated mitochondrial melanoma specific oncogenic non-coding RNA	ncRNA
0.952845-26	chr20	327450	327949	+	0	NA	promoter-TSS (NM_001323685)	promoter-TSS (NM_001323685)	329	NM_001323682	80023	Hs.416024	NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
18.3863-11	chr13	113292666	113293165	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-8443	NM_207440	400165	Hs.591213	NM_207440		ATP11AUN	C13orf35|SMABLO1	ATP11A upstream neighbor	protein-coding
0.51587-20	chr15	75061077	75061576	+	0	NA	Intergenic	Intergenic	-13099	NM_001127190	1445	Hs.77793	NM_004383	ENSG00000103653	CSK	-	c-src tyrosine kinase	protein-coding
20.6298	chr1	201346512	201347331	+	0	NA	promoter-TSS (NM_000364)	promoter-TSS (NM_000364)	-93	NM_001001432	7139	Hs.533613	NM_000364	ENSG00000118194	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T2, cardiac type	protein-coding
13.9794-3	chr2	33173844	33174343	+	0	NA	intron (NM_206943, intron 2 of 33)	intron (NM_206943, intron 2 of 33)	1724	NM_206943	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
1.36677-4	chr15	82915719	82916218	+	0	NA	intron (NR_045529, intron 17 of 23).2	intron (NR_045529, intron 17 of 23).2	23229	NM_001322400	647042	Hs.454625	NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family-like 10	protein-coding
0.181814-6	chr11	67415547	67416046	+	0	NA	intron (NM_080658, intron 1 of 7)	intron (NM_080658, intron 1 of 7)	2334	NM_080658	91703	Hs.126265	NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
2.73273-12	chr19	49728034	49728533	+	0	NA	Intergenic	Intergenic	67267	NM_001195227	54795	Hs.467101	NM_017636	ENSG00000130529	TRPM4	LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
2.35824-12	chr8	103666560	103667220	+	0	NA	promoter-TSS (NR_103760)	promoter-TSS (NR_103760)	-698	NR_103759	7071	Hs.435001	NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel like factor 10	protein-coding
12.7246-3	chr12	8778909	8779408	+	0	NA	Intergenic	SVA_E|Other|Other	-13695	NM_001330343	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation induced cytidine deaminase	protein-coding
2.0412-7	chr1	100314881	100315380	+	0	NA	promoter-TSS (NM_000642)	promoter-TSS (NM_000642)	-510	NM_000642	178	Hs.904	NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
6.1261-6	chr8	136483523	136484022	+	0	NA	intron (NM_006558, intron 1 of 8)	L2c|LINE|L2	14064	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
4.31798-5	chr11	63899085	63899584	+	0	NA	intron (NM_014067, intron 3 of 10)	L2c|LINE|L2	27972	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
4.88117-3	chr4	141348550	141349049	+	0	NA	promoter-TSS (NM_004362)	promoter-TSS (NM_004362)	16	NM_001130675	1047	Hs.86368	NM_004362	ENSG00000153132	CLGN	-	calmegin	protein-coding
1.12946-20	chr15	31692047	31692546	+	0	NA	intron (NM_001302461, intron 1 of 1)	intron (NM_001302461, intron 1 of 1)	73238	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
1.19186-16	chr22	21823807	21824306	+	0	NA	exon (NM_001207052, exon 9 of 9)	exon (NM_001207052, exon 9 of 9)	2597	NM_001207052	645426	Hs.376511	NM_001207052	ENSG00000206140	TMEM191C	-	transmembrane protein 191C	protein-coding
5.83359-19	chr8	49426915	49427414	+	0	NA	Intergenic	CpG	-36963	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
2.09012-2	chr19	46010400	46010899	+	0	NA	promoter-TSS (NM_003370)	promoter-TSS (NM_003370)	-39	NM_003370	7408	Hs.515469	NM_003370	ENSG00000125753	VASP	-	vasodilator-stimulated phosphoprotein	protein-coding
14.1454	chrX	19631766	19632265	+	0	NA	intron (NM_001024666, intron 7 of 16)	intron (NM_001024666, intron 7 of 16)	57104	NM_001184960	30011	Hs.726365	NM_031892	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
1.30182-8	chr11	126975526	126976025	+	0	NA	Intergenic	Intergenic	38878	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
3.38187-3	chr3	183218118	183218617	+	0	NA	intron (NM_130446, intron 3 of 6)	intron (NM_130446, intron 3 of 6)	-48156	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
3.22393-9	chr12	79627166	79627665	+	0	NA	intron (NM_001291901, intron 3 of 9)	intron (NM_001291901, intron 3 of 9)	-185622	NR_031700	100302136		NR_031700	ENSG00000221788	MIR1252	MIRN1252|hsa-mir-1252	microRNA 1252	ncRNA
0.462403-11	chr8	29743198	29743697	+	0	NA	Intergenic	Intergenic	-35582	NR_024473	286135	Hs.376840	NR_024473	ENSG00000253279	FAM183CP	-	family with sequence similarity 183 member C, pseudogene	ncRNA
7.37549-2	chr10	98869803	98870302	+	0	NA	intron (NM_003061, intron 4 of 36)	L1ME3E|LINE|L1	7539	NR_038330	100505540	Hs.568878	NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
2.0204-10	chr1	161435010	161435509	+	0	NA	Intergenic	CpG	-39946	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
7.9588-8	chr9	80210353	80210852	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	52630	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
0.15923-21	chr17	63133202	63133701	+	0	NA	promoter-TSS (NM_001165933)	promoter-TSS (NM_001165933)	-5	NM_001165933	8787	Hs.664380	NM_003835	ENSG00000108370	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
0.264104-4	chr1	248785701	248786200	+	0	NA	Intergenic	Intergenic	4479	NM_001001964	127077	Hs.626619	NM_001001964	ENSG00000279301	OR2T11	OR2T11Q	olfactory receptor family 2 subfamily T member 11 (gene/pseudogene)	protein-coding
7.59451	chr3	173925942	173926441	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-287605	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
23.9147	chr17	60721869	60722368	+	0	NA	intron (NM_006039, intron 1 of 29)	intron (NM_006039, intron 1 of 29)	17356	NM_006039	9902	Hs.7835	NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C type 2	protein-coding
20.57	chr3	183096676	183097175	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	49132	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
2.61219-20	chr17	7590692	7591191	+	0	NA	promoter-TSS (NM_018081)	promoter-TSS (NM_018081)	-73	NM_001276695	7157	Hs.437460	NM_000546	ENSG00000141510	TP53	BCC7|LFS1|P53|TRP53	tumor protein p53	protein-coding
7.54487-2	chr17	18979614	18980113	+	0	NA	Intergenic	Intergenic	-12911	NM_001291905	388436	Hs.677375	NM_001291905	ENSG00000281856	LOC388436	-	uncharacterized protein ENSP00000382042	protein-coding
1.15771-29	chr12	107714846	107715345	+	0	NA	intron (NM_001347944, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	730	NM_001347944	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding
5.37602-14	chr14	70138048	70138547	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	59987	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
9.28118-2	chr1	33815454	33815953	+	0	NA	promoter-TSS (NR_125978)	promoter-TSS (NR_125978)	-204	NM_004427	1912	Hs.524271	NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
2.1467-6	chr2	74709502	74710001	+	0	NA	promoter-TSS (NM_022492)	promoter-TSS (NM_022492)	-449	NM_022492	64427	Hs.557709	NM_022492	ENSG00000115282	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
0.362122-10	chr2	64486396	64486895	+	0	NA	Intergenic	Intergenic	31110	NR_120420	100507006	Hs.442789	NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
0.352691-11	chr10	21823686	21824185	+	0	NA	intron (NR_136736, intron 2 of 25)	CpG	361	NM_001195626	8028	Hs.30385	NM_004641	ENSG00000078403	MLLT10	AF10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding
0.282604-2	chr2	130158392	130158891	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-127177	NR_122040	151121	Hs.531687	NM_001033657	ENSG00000204460	LINC01854	-	long intergenic non-protein coding RNA 1854	ncRNA
0.76238-5	chr10	62332609	62333108	+	0	NA	promoter-TSS (NM_001204404)	promoter-TSS (NM_001204404)	-144	NM_001204404	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
0.181814-3	chr8	7744331	7744830	+	0	NA	Intergenic	Intergenic	5854	NM_018661	55894	Hs.283082	NM_018661	ENSG00000177243	DEFB103B	BD-3|DEFB-3|DEFB103|DEFB3|HBD-3|HBD3|HBP-3|HBP3	defensin beta 103B	protein-coding
1.27844-3	chr10	38146734	38147233	+	0	NA	promoter-TSS (NM_001267606)	promoter-TSS (NM_001267606)	29	NM_001267597	57209	Hs.528423	NM_021045	ENSG00000198105	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
1.12946-2	chr2	112641118	112641617	+	0	NA	intron (NM_022662, intron 1 of 47)	CpG	374	NM_022662	64682	Hs.436527	NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
0.574959-5	chr9	136325476	136325975	+	0	NA	intron (NM_001242370, intron 1 of 4)	intron (NM_001242370, intron 1 of 4)	638	NM_001242370	11094	Hs.62003	NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
4.34152-4	chr2	99391599	99392098	+	0	NA	Intergenic	Intergenic	-3487	NR_126337	101927070	Hs.469395	NR_126337		LOC101927070	-	uncharacterized LOC101927070	ncRNA
0.109954-3	chr1	171226209	171226708	+	0	NA	promoter-TSS (NM_001282692)	promoter-TSS (NM_001282692)	-604	NM_001282692	2326	Hs.1424	NM_002021	ENSG00000010932	FMO1	-	flavin containing monooxygenase 1	protein-coding
10.4769	chr2	215667584	215668083	+	0	NA	intron (NM_001282549, intron 1 of 4)	LTR5_Hs|LTR|ERVK	6602	NM_001282543	580	Hs.591642	NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
0.535477-6	chr21	18826735	18827234	+	0	NA	Intergenic	Intergenic	15776	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	LINC01549	C21orf37	long intergenic non-protein coding RNA 1549	ncRNA
1.19758-2	chr1	208310632	208311131	+	0	NA	intron (NM_025179, intron 4 of 31)	intron (NM_025179, intron 4 of 31)	106784	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
0.123337-45	chr14	24911064	24911802	+	0	NA	promoter-TSS (NR_110032)	promoter-TSS (NR_110032)	574	NM_020195	56948	Hs.643552	NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
31.3906	chr13	73939454	73939953	+	0	NA	Intergenic	Intergenic	-198678	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
2.31362-2	chr7	6388362	6388861	+	0	NA	promoter-TSS (NM_001037163)	promoter-TSS (NM_001037163)	-21	NM_001037163	84792	Hs.696146	NM_001037163	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
14.9485-8	chr12	3228900	3229399	+	0	NA	intron (NM_006675, intron 2 of 8)	MIR3|SINE|MIR	42628	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
2.25483-6	chr13	36453244	36453743	+	0	NA	intron (NM_001330071, intron 4 of 16)	intron (NM_001330071, intron 4 of 16)	-23495	NM_001195416	9201	Hs.507755	NM_004734	ENSG00000133083	DCLK1	CL1|CLICK1|DCAMKL1|DCDC3A|DCLK	doublecortin like kinase 1	protein-coding
9.10095-4	chr8	81397471	81397970	+	0	NA	promoter-TSS (NM_001277145)	promoter-TSS (NM_001277145)	-134	NM_001277145	65986	Hs.591868	NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
27.3518	chr5	159003909	159004408	+	0	NA	Intergenic	Intergenic	-110874	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
6.9897-19	chr5	112535136	112535635	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	95227	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
0.0217692-6	chr20	34787530	34788029	+	0	NA	intron (NM_001258330, intron 14 of 20)	intron (NM_001258330, intron 14 of 20)	-36560	NM_015511	25980	Hs.11314	NM_015511	ENSG00000131043	AAR2	C20orf4|CGI-23	AAR2 splicing factor homolog	protein-coding
0.0174066-3	chr2	11617970	11618469	+	0	NA	Intergenic	Intergenic	-11916	NM_001278278	1876	Hs.603093	NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
0.428718-43	chr22	36310993	36311492	+	0	NA	intron (NM_001082578, intron 2 of 13)	intron (NM_001082578, intron 2 of 13)	-74612	NM_001082576	23543	Hs.282998	NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog 2	protein-coding
0.347983-14	chr14	56584771	56585270	+	0	NA	promoter-TSS (NM_021255)	promoter-TSS (NM_021255)	-73	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
31.8842	chr20	23901456	23901955	+	0	NA	Intergenic	Intergenic	-41325	NM_001900	1473	Hs.121489	NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
0.0744648-2	chr3	99357164	99357663	+	0	NA	promoter-TSS (NM_020351)	promoter-TSS (NM_020351)	-27	NM_020351	1295	Hs.654548	NM_001850	ENSG00000144810	COL8A1	C3orf7	collagen type VIII alpha 1 chain	protein-coding
0.150229-3	chr20	13619191	13619872	+	0	NA	promoter-TSS (NR_136629)	promoter-TSS (NR_136629)	52	NR_136630	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	taspase 1	protein-coding
14.0561-2	chr7	46299828	46300327	+	0	NA	Intergenic	Intergenic	-339206	NM_001013398	3486	Hs.450230	NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP3	insulin like growth factor binding protein 3	protein-coding
19.5861-3	chr3	12801794	12802293	+	0	NA	intron (NM_001284406, intron 1 of 11)	L2a|LINE|L2	-1235	NM_001284408	55287	Hs.475502	NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
0.209071-17	chr20	52556362	52556861	+	0	NA	Intergenic	Intergenic	-64363	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
4.53457-6	chr2	134023948	134024447	+	0	NA	intron (NR_110294, intron 1 of 4)	CpG	430	NR_110294	101928161	Hs.661917	NR_110294	ENSG00000226953	LOC101928161	-	uncharacterized LOC101928161	ncRNA
1.25518-3	chr15	30435266	30435765	+	0	NA	intron (NR_033933, intron 13 of 16)	intron (NR_033933, intron 13 of 16)	7525	NR_033933	653075	Hs.727141	NR_033933		GOLGA8T	-	golgin A8 family member T	pseudo
31.5181	chr12	125158527	125159207	+	0	NA	Intergenic	Intergenic	-106857	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
2.30623-6	chr7	158450387	158450886	+	0	NA	intron (NM_001281933, intron 17 of 27)	SVA_D|Other|Other	46886	NR_104054	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
20.7314	chr6	42858478	42858977	+	0	NA	promoter-TSS (NM_001008739)	promoter-TSS (NM_001008739)	-173	NM_001008739	441150	Hs.571098	NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
1.58641-13	chr4	57167553	57168052	+	0	NA	intron (NM_020722, intron 4 of 10)	intron (NM_020722, intron 4 of 10)	85872	NM_001286668	132949	Hs.104347	NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
10.752-2	chr7	122262708	122263207	+	0	NA	intron (NM_001009571, intron 4 of 27)	Tigger10|DNA|TcMar-Tigger	76251	NM_139175	168433	Hs.126730	NM_139175	ENSG00000188050	RNF133	-	ring finger protein 133	protein-coding
7.56962-17	chr1	231472744	231473243	+	0	NA	promoter-TSS (NM_032018)	promoter-TSS (NM_032018)	625	NM_175876	149371	Hs.356198	NM_175876	ENSG00000116903	EXOC8	EXO84|Exo84p|SEC84	exocyst complex component 8	protein-coding
1.75224-7	chr7	32997227	32997726	+	0	NA	intron (NM_007270, intron 1 of 9)	CpG	460	NM_007270	11328	Hs.103934	NM_007270	ENSG00000122642	FKBP9	FKBP60|FKBP63|PPIase	FK506 binding protein 9	protein-coding
1.37869-48	chr17	53163872	53164371	+	0	NA	intron (NM_178509, intron 16 of 17)	L1MA5A|LINE|L1	-117975	NR_027942	1353	Hs.591171	NM_004375	ENSG00000166260	COX11	COX11P	COX11, cytochrome c oxidase copper chaperone	protein-coding
1.40862-2	chr7	126892778	126893277	+	0	NA	promoter-TSS (NM_001127323)	promoter-TSS (NM_001127323)	-599	NM_001127323	2918	Hs.449625	NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
8.69666-15	chr6	155332523	155333022	+	0	NA	Intergenic	Intergenic	-78651	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
0.861861-11	chr3	139077629	139078128	+	0	NA	exon (NM_004766, exon 19 of 22)	exon (NM_004766, exon 19 of 22)	15017	NM_020191	56945	Hs.745001	NM_020191	ENSG00000175110	MRPS22	C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22	mitochondrial ribosomal protein S22	protein-coding
0.218195-5	chr1	52607436	52607935	+	0	NA	promoter-TSS (NM_004799)	promoter-TSS (NM_004799)	-81	NM_007324	9372	Hs.532345	NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
10.8407	chr2	58003624	58004123	+	0	NA	Intergenic	Intergenic	-130913	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
0.0612309-6	chr5	111496262	111496761	+	0	NA	promoter-TSS (NR_002922)	promoter-TSS (NR_002922)	288	NR_015370	114915	Hs.12082	NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
0.0612309-20	chr7	139167625	139168124	+	0	NA	exon (NM_198508, exon 1 of 5)	exon (NM_198508, exon 1 of 5)	583	NM_198508	346689	Hs.17572	NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
0.0612309-13	chr2	37012207	37012706	+	0	NA	intron (NM_053276, intron 11 of 15)	MER5A1|DNA|hAT-Charlie	88623	NM_001328661	5212	Hs.137415	NM_053276	ENSG00000205221	VIT	-	vitrin	protein-coding
0.599818-30	chr2	219828710	219829209	+	0	NA	Intergenic	Intergenic	4609	NM_003936	8941	Hs.158460	NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
5.90067	chr6	161919343	161919842	+	0	NA	intron (NM_013987, intron 8 of 10)	MLT1I|LTR|ERVL-MaLR	27583	NR_134593	105378098	Hs.691066	NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
6.28932-8	chr11	4259289	4259788	+	0	NA	Intergenic	SVA_B|Other|Other	51156	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	ncRNA
1.37272-27	chr3	140949885	140950384	+	0	NA	promoter-TSS (NM_001037172)	promoter-TSS (NM_001037172)	-533	NM_152282	92370	Hs.657887	NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
1.04025-12	chr9	138391492	138391991	+	0	NA	promoter-TSS (NR_051967)	promoter-TSS (NR_051967)	20	NM_001048265	138162	Hs.414028	NM_144654	ENSG00000160345	C9orf116	PIERCE1|RbEST47	chromosome 9 open reading frame 116	protein-coding
0.273344-24	chr15	72447799	72448298	+	0	NA	Intergenic	Intergenic	37417	NM_001172111	123228	Hs.513002	NM_145204	ENSG00000166192	SENP8	DEN1|NEDP1|PRSC2	SUMO/sentrin peptidase family member, NEDD8 specific	protein-coding
8.96196-9	chr6	136672765	136673264	+	0	NA	intron (NM_001198618, intron 16 of 17)	LTR41|LTR|ERVL	-62025	NM_001077440	9774	Hs.486542	NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
2.78189-11	chr15	99190123	99191038	+	0	NA	non-coding (NR_126453, exon 1 of 1)	non-coding (NR_126453, exon 1 of 1)	-1188	NM_001291858	3480	Hs.643120	NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
0.172766-2	chr6	99841279	99841778	+	0	NA	intron (NM_017421, intron 1 of 6)	intron (NM_017421, intron 1 of 6)	554	NM_017421	51805	Hs.713623	NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3, methyltransferase	protein-coding
6.9897-6	chr13	33550422	33550921	+	0	NA	Intergenic	Intergenic	-39900	NM_004795	9365	Hs.524953	NM_004795	ENSG00000133116	KL	-	klotho	protein-coding
10.1502	chr5	642802	643301	+	0	NA	intron (NM_018140, intron 9 of 11)	intron (NM_018140, intron 9 of 11)	30646	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
0.32452-2	chr8	130765142	130765641	+	0	NA	intron (NM_031415, intron 6 of 13)	L1MA2|LINE|L1	33743	NM_031415	56169	Hs.133244	NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
10.716	chr9	85812460	85812959	+	0	NA	Intergenic	Intergenic	69493	NM_001244962	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
3.93619-8	chr14	103608294	103608793	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	15879	NM_006291	7127	Hs.525607	NM_006291	ENSG00000185215	TNFAIP2	B94|EXOC3L3	TNF alpha induced protein 2	protein-coding
21.5864	chr1	228996724	228997223	+	0	NA	Intergenic	Intergenic	126149	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
0.979971-27	chr12	120632450	120632949	+	0	NA	promoter-TSS (NM_006836)	promoter-TSS (NM_006836)	-186	NM_006836	10985	Hs.298716	NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1, eIF2 alpha kinase activator homolog	protein-coding
12.2841-2	chr20	46478848	46479347	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-63737	NM_198596	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
9.62574-5	chr1	182662801	182663300	+	0	NA	Intergenic	L1PA15|LINE|L1	-20983	NM_001102450	85397	Hs.20982	NM_033345	ENSG00000135824	RGS8	-	regulator of G-protein signaling 8	protein-coding
3.69572-9	chr17	19287876	19288375	+	0	NA	intron (NM_001198695, intron 5 of 5)	intron (NM_001198695, intron 5 of 5)	2407	NM_002404	4239	Hs.296049	NM_002404	ENSG00000166482	MFAP4	-	microfibrillar associated protein 4	protein-coding
0.540393-14	chr4	134404703	134405202	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	334507	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
5.76754-5	chr12	7058242	7058741	+	0	NA	intron (NM_080548, intron 1 of 15)	intron (NM_080548, intron 1 of 15)	-1943	NM_002831	5777	Hs.63489	NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase, non-receptor type 6	protein-coding
1.9044-4	chr7	150125676	150126175	+	0	NA	Intergenic	Intergenic	-4817	NR_034033	285972	Hs.647110	NR_034033	ENSG00000242258	LINC00996	-	long intergenic non-protein coding RNA 996	ncRNA
3.88277-7	chr10	135122092	135122591	+	0	NA	promoter-TSS (NM_145806)	promoter-TSS (NM_145806)	-52	NR_130127	118472	Hs.422113	NM_145806	ENSG00000198546	ZNF511	-	zinc finger protein 511	protein-coding
12.7984-3	chr1	249124674	249125173	+	0	NA	Intergenic	SVA_B|Other|Other	4347	NR_036070	100422879		NR_036070	ENSG00000264500	MIR3124	mir-3124	microRNA 3124	ncRNA
39.3181	chr5	56737292	56737791	+	0	NA	Intergenic	Intergenic	41095	NM_001017992	345651	Hs.482167	NM_001017992	ENSG00000169067	ACTBL2	ACT	actin, beta like 2	protein-coding
4.65974-18	chr1	109643017	109643516	+	0	NA	TTS (NR_003023)	TTS (NR_003023)	451	NR_003023	677766	Hs.550815	NR_003023	ENSG00000270066	SCARNA2	HBII-382|mgU2-25/61	small Cajal body-specific RNA 2	ncRNA
2.26945-9	chr1	148931267	148931766	+	0	NA	intron (NR_027354, intron 1 of 3)	intron (NR_027354, intron 1 of 3)	1111	NR_027354	645166	Hs.744183	NR_027354		LOC645166	-	lymphocyte-specific protein 1 pseudogene	pseudo
2.17527-6	chr6	151646401	151646900	+	0	NA	promoter-TSS (NM_144497)	promoter-TSS (NM_144497)	-16	NM_144497	9590	Hs.371240	NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
0.685421-4	chrX	54479349	54479848	+	0	NA	intron (NM_004463, intron 12 of 17)	intron (NM_004463, intron 12 of 17)	12790	NM_001346791	90121	Hs.522662	NM_058163	ENSG00000158526	TSR2	DBA14|DT1P1A10|WGG1	TSR2, ribosome maturation factor	protein-coding
0.123337-49	chr1	153508431	153508930	+	0	NA	promoter-TSS (NM_014624)	promoter-TSS (NM_014624)	37	NM_014624	6277	Hs.275243	NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA	S100 calcium binding protein A6	protein-coding
4.08935-17	chr12	58258551	58259050	+	0	NA	Intergenic	MIR3|SINE|MIR	-18053	NM_005730	10106	Hs.524530	NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
0.0877392-11	chr1	1243531	1244030	+	0	NA	promoter-TSS (NM_030649)	promoter-TSS (NM_030649)	-180	NM_153339	126789	Hs.400659	NM_153339	ENSG00000169972	PUSL1	-	pseudouridylate synthase-like 1	protein-coding
1.28427-8	chr4	127966981	127967480	+	0	NA	Intergenic	Intergenic	-586857	NM_015693	27152	Hs.391481	NM_015693	ENSG00000164066	INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
10.3905	chr2	7127134	7127633	+	0	NA	intron (NM_014746, intron 2 of 8)	intron (NM_014746, intron 2 of 8)	-68570	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	ncRNA
0.15923-27	chr18	69753584	69754083	+	0	NA	Intergenic	L2c|LINE|L2	-304371	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
1.62412-4	chr1	186611775	186612274	+	0	NA	Intergenic	L1PA2|LINE|L1	37535	NM_000963	5743	Hs.196384	NM_000963	ENSG00000073756	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2	protein-coding
1.23205-11	chr19	51842010	51842509	+	0	NA	exon (NM_001163922, exon 5 of 10)	exon (NM_001163922, exon 5 of 10)	3119	NM_001163922	147645	Hs.293236	NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
5.48214-6	chr16	84872582	84873081	+	0	NA	intron (NM_031476, intron 2 of 14)	intron (NM_031476, intron 2 of 14)	19244	NM_031476	83716	Hs.513779	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
9.06578-8	chr8	6692857	6693356	+	0	NA	promoter-TSS (NM_207411)	promoter-TSS (NM_207411)	30	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA
0.486625-20	chr3	36742378	36742877	+	0	NA	Intergenic	Intergenic	38725	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin like kinase 3	protein-coding
31.549	chr5	150974780	150975279	+	0	NA	Intergenic	Intergenic	-26524	NM_001447	2196	Hs.591255	NM_001447	ENSG00000086570	FAT2	CDHF8|CDHR9|HFAT2|MEGF1	FAT atypical cadherin 2	protein-coding
2.72459-6	chr3	84968214	84968713	+	0	NA	Intergenic	SVA_C|Other|Other	-39670	NM_001167675	253559	Hs.164578	NM_153184	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
2.39578-2	chr4	156297799	156298298	+	0	NA	promoter-TSS (NM_001039580)	promoter-TSS (NM_001039580)	74	NM_001039580	79884	Hs.61271	NM_001039580	ENSG00000164114	MAP9	ASAP	microtubule associated protein 9	protein-coding
3.17855-5	chr20	25013816	25014315	+	0	NA	promoter-TSS (NM_001252676)	promoter-TSS (NM_001252676)	-723	NM_001252676	84532	Hs.529353	NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
44.4491	chr2	65291985	65292484	+	0	NA	intron (NR_134966, intron 1 of 5)	intron (NR_134966, intron 1 of 5)	8739	NM_001319100	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
1.7134-14	chr14	45433140	45433639	+	0	NA	non-coding (NR_131765, exon 1 of 20)	non-coding (NR_131765, exon 1 of 20)	1996	NM_001308120	23116	Hs.371078	NM_015091	ENSG00000198718	FAM179B	KIAA0423	family with sequence similarity 179 member B	protein-coding
9.39302-12	chr1	202663311	202663810	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	15991	NM_177402	127833	Hs.25422	NM_177402	ENSG00000143858	SYT2	CMS7|MYSPC|SytII	synaptotagmin 2	protein-coding
0.428718-41	chr15	30383237	30383736	+	0	NA	intron (NM_001282472, intron 13 of 18)	intron (NM_001282472, intron 13 of 18)	8328	NM_001282472	653073	Hs.574257	NM_001282472	ENSG00000179938	GOLGA8J	-	golgin A8 family member J	protein-coding
6.86133-4	chr12	50505633	50506132	+	0	NA	TTS (NM_001257199)	TTS (NM_001257199)	118	NM_001257133	84987	Hs.388645	NM_032901	ENSG00000178449	COX14	C12orf62|PCAG1	COX14, cytochrome c oxidase assembly factor	protein-coding
5.76754-7	chr1	160053764	160054263	+	0	NA	exon (NM_004983, exon 2 of 3)	exon (NM_004983, exon 2 of 3)	2653	NM_004983	3765	Hs.66726	NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium voltage-gated channel subfamily J member 9	protein-coding
0.305841-7	chr1	21750907	21751406	+	0	NA	Intergenic	Intergenic	-15427	NM_032264	84224	Hs.325422	NM_032264	ENSG00000142794	NBPF3	AE2	neuroblastoma breakpoint family member 3	protein-coding
4.58421-7	chr6	36842144	36842643	+	0	NA	intron (NM_001286636, intron 1 of 9)	CpG	407	NM_016059	51645	Hs.27693	NM_016059	ENSG00000137168	PPIL1	CGI-124|CYPL1|PPIase|hCyPX	peptidylprolyl isomerase like 1	protein-coding
0.0392635-27	chr16	3314343	3314842	+	0	NA	non-coding (NR_033904, exon 1 of 2)	non-coding (NR_033904, exon 1 of 2)	824	NR_033904	283876	Hs.592092	NR_033904	ENSG00000281005	LINC00921	-	long intergenic non-protein coding RNA 921	ncRNA
5.0307-8	chr8	111571895	111572394	+	0	NA	Intergenic	LTR1B|LTR|ERV1	467518	NR_125416	101927459	Hs.575543	NR_125416	ENSG00000253877	LINC01608	-	long intergenic non-protein coding RNA 1608	ncRNA
1.72631-2	chr20	3758344	3758843	+	0	NA	3' UTR (NM_015417, exon 7 of 7)	3' UTR (NM_015417, exon 7 of 7)	3509	NM_015417	25876	Hs.72620	NM_015417	ENSG00000101222	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
1.73277-24	chr17	36908593	36909092	+	0	NA	promoter-TSS (NM_002795)	promoter-TSS (NM_002795)	-124	NR_104194	5691	Hs.82793	NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome subunit beta 3	protein-coding
0.0744648-14	chr9	72725342	72726271	+	0	NA	intron (NM_001347990, intron 4 of 11)	intron (NM_001347990, intron 4 of 11)	64998	NR_040076	100507244	Hs.556816	NR_040076	ENSG00000204706	MAMDC2-AS1	-	MAMDC2 antisense RNA 1	ncRNA
1.05684-8	chr19	40904581	40905080	+	0	NA	intron (NM_181882, intron 5 of 6)	CpG	-8702	NM_144685	147746	Hs.79363	NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
3.55561-8	chrX	123323744	123324243	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-156139	NM_001114937	4068	Hs.349094	NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
12.5104-2	chr8	62172256	62172755	+	0	NA	Intergenic	L2b|LINE|L2	-28020	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
0.070049-13	chr11	109293736	109294235	+	0	NA	intron (NM_207645, intron 1 of 1)	CpG	1139	NM_207645	399947	Hs.172982	NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
13.7986-4	chr6	20952780	20953279	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	418341	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
6.28932-12	chr4	139936365	139936864	+	0	NA	promoter-TSS (NM_012118)	promoter-TSS (NM_012118)	-299	NM_012118	25819	Hs.639842	NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
4.31798	chr4	78977777	78978276	+	0	NA	promoter-TSS (NM_025074)	promoter-TSS (NM_025074)	-698	NM_025074	80144	Hs.369448	NM_020875	ENSG00000138759	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
9.95679-9	chr8	97273531	97274030	+	0	NA	promoter-TSS (NM_014754)	promoter-TSS (NM_014754)	61	NM_001286643	51001	Hs.308613	NM_015942	ENSG00000156469	MTERF3	CGI-12|MTERFD1	mitochondrial transcription termination factor 3	protein-coding
0.296531-30	chr22	41843548	41844047	+	0	NA	promoter-TSS (NM_016272)	promoter-TSS (NM_016272)	-770	NM_016272	10766	Hs.474978	NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
16.038-10	chr9	76457298	76457797	+	0	NA	Intergenic	Intergenic	-528900	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
10.1412	chr18	57515299	57515798	+	0	NA	Intergenic	Intergenic	-51644	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
1.4691-8	chr17	20811718	20812217	+	0	NA	Intergenic	CpG	-12514	NM_001004306	339184	Hs.674830	NM_001004306	ENSG00000205212	CCDC144NL	-	coiled-coil domain containing 144 family, N-terminal like	protein-coding
9.66576-8	chr3	119528932	119529431	+	0	NA	intron (NM_022002, intron 3 of 8)	intron (NM_022002, intron 3 of 8)	27624	NM_022002	8856	Hs.7303	NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
1.26098-20	chr1	147362260	147362759	+	0	NA	Intergenic	Intergenic	-12437	NM_005267	2703	Hs.632441	NM_005267	ENSG00000121634	GJA8	CAE|CAE1|CTRCT1|CX50|CZP1|MP70	gap junction protein alpha 8	protein-coding
1.36677-11	chr1	8933658	8934157	+	0	NA	intron (NM_001428, intron 2 of 11)	intron (NM_001428, intron 2 of 11)	-2272	NM_001201483	2023	Hs.517145	NM_001428	ENSG00000074800	ENO1	ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding
11.7457-8	chr5	142974670	142975169	+	0	NA	Intergenic	Intergenic	-84506	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
16.216	chr15	26639689	26640188	+	0	NA	Intergenic	Intergenic	234387	NM_001191321	2562	Hs.302352	NM_000814	ENSG00000166206	GABRB3	ECA5|EIEE43	gamma-aminobutyric acid type A receptor beta3 subunit	protein-coding
28.6967-2	chr7	30810882	30811496	+	0	NA	intron (NM_032222, intron 1 of 17)	CpG	156	NM_032222	84182	Hs.660192	NM_032222	ENSG00000106125	FAM188B	C7orf67	family with sequence similarity 188 member B	protein-coding
0.670192-6	chr2	66307178	66307677	+	0	NA	Intergenic	Intergenic	278033	NR_039938	100616464		NR_039938	ENSG00000264525	MIR4778	-	microRNA 4778	ncRNA
0.409586-25	chr8	23153572	23154071	+	0	NA	TTS (NM_001136108)	TTS (NM_001136108)	8216	NR_125897	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
1.13509-3	chr6	16129945	16130444	+	0	NA	intron (NM_013262, intron 1 of 6)	intron (NM_013262, intron 1 of 6)	877	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
2.58061-7	chr6	156742315	156742814	+	0	NA	Intergenic	LTR14B|LTR|ERVK	-356425	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
2.24026-4	chr2	73495732	73496231	+	0	NA	exon (NM_001080410, exon 1 of 12)	exon (NM_001080410, exon 1 of 12)	777	NM_001080410	150726	Hs.23158	NM_001080410	ENSG00000163013	FBXO41	FBX41	F-box protein 41	protein-coding
2.29148-12	chr14	59105061	59105560	+	0	NA	promoter-TSS (NR_046095)	promoter-TSS (NR_046095)	-245	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
8.9279-8	chr13	86299474	86299973	+	0	NA	Intergenic	Intergenic	73760	NM_032229	84189	Hs.525105	NM_032229	ENSG00000184564	SLITRK6	DFNMYP	SLIT and NTRK like family member 6	protein-coding
21.7522	chr3	124036865	124037364	+	0	NA	intron (NM_001024660, intron 6 of 59)	intron (NM_001024660, intron 6 of 59)	-56065	NR_106731	102464832		NR_106731	ENSG00000276656	MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
1.79799-16	chr4	141173947	141174446	+	0	NA	Intergenic	CpG	-4244	NM_032547	60592	Hs.480815	NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
3.9794-24	chr12	62996024	62996831	+	0	NA	non-coding (NR_121682, exon 1 of 1)	non-coding (NR_121682, exon 1 of 1)	787	NR_121682	283416	Hs.375881	NM_175895	ENSG00000221949	LINC01465	C12orf61	long intergenic non-protein coding RNA 1465	ncRNA
8.21023-13	chr11	1595163	1595662	+	0	NA	intron (NR_021489, intron 1 of 1)	intron (NR_021489, intron 1 of 1)	1441	NR_021489	338651	Hs.633229	NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
18.1816	chr8	142396792	142397291	+	0	NA	Intergenic	Intergenic	-19676	NM_005293	2843	Hs.152432	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
1.20904-14	chr5	172758892	172759391	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-2635	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
5.8838	chr1	94057201	94057700	+	0	NA	promoter-TSS (NR_034091)	promoter-TSS (NR_034091)	-75	NR_034091	100129046	Hs.729244	NR_034091		LOC100129046	-	uncharacterized LOC100129046	ncRNA
2.80669-9	chr12	28325316	28325815	+	0	NA	Intergenic	LFSINE_Vert|SINE|SINE	-17795	NM_001330367	55297	Hs.653125	NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding
1.45087-10	chr8	145050683	145051182	+	0	NA	promoter-TSS (NM_000445)	promoter-TSS (NM_000445)	-19	NM_000445	5339	Hs.434248	NM_000445	ENSG00000178209	PLEC	EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
32.3284-3	chr11	132000926	132001425	+	0	NA	intron (NM_001144058, intron 1 of 7)	intron (NM_001144058, intron 1 of 7)	-153021	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
1.4813-4	chr8	81904090	81904589	+	0	NA	intron (NM_018440, intron 4 of 8)	intron (NM_018440, intron 4 of 8)	-117323	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
6.36388-7	chr13	40866173	40866672	+	0	NA	Intergenic	MIR|SINE|MIR	-71783	NR_033877	400123	Hs.577960	NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
18.6328-2	chr1	118174388	118174887	+	0	NA	Intergenic	MIRb|SINE|MIR	26033	NM_017709	54855	Hs.356216	NM_017709	ENSG00000183508	FAM46C	-	family with sequence similarity 46 member C	protein-coding
23.7366	chr7	141787682	141788181	+	0	NA	intron (NM_004668, intron 38 of 47)	intron (NM_004668, intron 38 of 47)	-23618	NM_001293626	93432	Hs.647098	NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding
7.16699-5	chr16	56966703	56967202	+	0	NA	intron (NM_014685, intron 1 of 7)	intron (NM_014685, intron 1 of 7)	950	NM_014685	9709	Hs.146393	NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
10.7831	chr22	35921456	35921955	+	0	NA	Intergenic	Intergenic	-15647	NM_014310	23551	Hs.474711	NM_014310	ENSG00000100302	RASD2	MGC:4834|Rhes|TEM2	RASD family member 2	protein-coding
0.310503-14	chr2	112456576	112457075	+	0	NA	Intergenic	Intergenic	71886	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
2.51037-13	chr6	147526823	147527322	+	0	NA	intron (NM_001127715, intron 1 of 27)	intron (NM_001127715, intron 1 of 27)	-1322	NR_034115	729178	Hs.557608	NR_034115		STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
1.0513	chr17	60143083	60143582	+	0	NA	promoter-TSS (NM_005121)	promoter-TSS (NM_005121)	-689	NM_005121	9969	Hs.282678	NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
0.746879-11	chr6	122931769	122932268	+	0	NA	intron (NM_181795, intron 1 of 4)	intron (NM_181795, intron 1 of 4)	641	NM_181795	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
0.231917-10	chr4	78583457	78583956	+	0	NA	Intergenic	Intergenic	150799	NM_006419	10563	Hs.100431	NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
0.381045-13	chr9	98188904	98189403	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-36738	NR_038982	100507346	Hs.661847	NR_038982		LOC100507346	-	uncharacterized LOC100507346	ncRNA
0.736576-31	chr13	104103977	104104476	+	0	NA	Intergenic	Intergenic	26676	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
3.07153-3	chr2	118571882	118572381	+	0	NA	promoter-TSS (NM_006773)	promoter-TSS (NM_006773)	-124	NM_006773	8886	Hs.744922	NM_006773	ENSG00000088205	DDX18	MrDb	DEAD-box helicase 18	protein-coding
0.390538-18	chr3	141998761	141999260	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-54561	NR_033289	256356	Hs.135904	NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5 (putative)	protein-coding
7.9588-16	chr7	8418169	8418668	+	0	NA	Intergenic	Intergenic	-55167	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
11.1634-5	chr2	211293417	211293916	+	0	NA	intron (NR_110606, intron 1 of 4)	intron (NR_110606, intron 1 of 4)	47763	NM_001136574	10314	Hs.13351	NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like 1	protein-coding
3.56547-10	chr2	232229741	232230240	+	0	NA	intron (NM_001271466, intron 23 of 24)	intron (NM_001271466, intron 23 of 24)	2571	NR_039937	100616317		NR_039937	ENSG00000263641	MIR4777	-	microRNA 4777	ncRNA
2.74088-7	chr9	16689326	16689825	+	0	NA	intron (NM_001317940, intron 2 of 5)	intron (NM_001317940, intron 2 of 5)	181211	NM_017637	54796	Hs.656581	NM_017637	ENSG00000173068	BNC2	BSN2	basonuclin 2	protein-coding
1.45694-25	chrX	101906744	101907243	+	0	NA	intron (NM_001184727, intron 2 of 5)	CpG-28159	664	NM_001184727	9737	Hs.729265	NM_014710	ENSG00000198932	GPRASP1	GASP|GASP-1|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding
2.38824	chr16	4715361	4715860	+	0	NA	intron (NM_001142291, intron 7 of 15)	AluSz|SINE|Alu	-5709	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
18.8606-3	chr8	95961979	95962478	+	0	NA	promoter-TSS (NM_033285)	promoter-TSS (NM_033285)	-613	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
13.8828	chr18	112115	112614	+	0	NA	promoter-TSS (NR_107045)	promoter-TSS (NR_107045)	-25	NR_107045	102466878		NR_107045	ENSG00000277521	MIR8078	hsa-mir-8078	microRNA 8078	ncRNA
1.09579-7	chr4	2538887	2539386	+	0	NA	Intergenic	CpG	67956	NM_001185009	6047	Hs.66394	NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
0.127808-37	chr19	8386071	8386570	+	0	NA	promoter-TSS (NR_135539)	promoter-TSS (NR_135539)	-23	NM_005001	4701	Hs.333427	NM_005001	ENSG00000167774	NDUFA7	B14.5a|CI-B14.5a	NADH:ubiquinone oxidoreductase subunit A7	protein-coding
17.3993-8	chr7	138722944	138723443	+	0	NA	Intergenic	Intergenic	-2418	NM_080660	92092	Hs.512833	NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
3.25139-4	chr7	100812910	100813409	+	0	NA	TTS (NM_198571)	TTS (NM_198571)	-4307	NM_003378	7425	Hs.587325	NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
0.0261362-7	chr5	1292254	1292753	+	0	NA	intron (NM_198253, intron 2 of 15)	CpG	2659	NM_001193376	7015	Hs.492203	NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
5.39102-6	chr3	42950489	42950988	+	0	NA	intron (NM_001134656, intron 3 of 3)	SVA_B|Other|Other	3080	NM_001134656	389114	Hs.720173	NM_207404	ENSG00000182983	ZNF662	-	zinc finger protein 662	protein-coding
5.39102-2	chr9	102658309	102658808	+	0	NA	intron (NR_038853, intron 1 of 2)	L1M1|LINE|L1	10325	NR_038853	441461	Hs.163155	NR_038853	ENSG00000255145	STX17-AS1	-	STX17 antisense RNA 1	ncRNA
19.7881-2	chr2	96924359	96924858	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	7143	NM_017849	55654	Hs.164303	NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
1.0902-10	chr6	133209756	133210255	+	0	NA	Intergenic	Intergenic	71647	NR_002436	594839	Hs.671378	NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
0.00434512-34	chr5	153741357	153741856	+	0	NA	intron (NM_198321, intron 4 of 11)	intron (NM_198321, intron 4 of 11)	14940	NR_031626	100302181		NR_031626	ENSG00000221430	MIR1294	MIRN1294|hsa-mir-1294|mir-1294	microRNA 1294	ncRNA
0.467237-14	chr5	121648745	121649244	+	0	NA	intron (NM_001308107, intron 1 of 8)	intron (NM_001308107, intron 1 of 8)	1230	NM_001242935	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
0.296531-46	chr20	1408318	1408817	+	0	NA	Intergenic	L1MD2|LINE|L1	-34751	NM_001199786	2280	Hs.471933	NM_000801	ENSG00000088832	FKBP1A	FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE	FK506 binding protein 1A	protein-coding
7.72113-12	chrX	122918670	122919169	+	0	NA	Intergenic	Intergenic	-52015	NM_001081550	57187	Hs.149991	NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
1.6813-7	chr17	80731909	80732408	+	0	NA	intron (NM_005993, intron 6 of 38)	SVA_B|Other|Other	22218	NM_005993	6904	Hs.464391	NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
1.33122-7	chr17	72256280	72256779	+	0	NA	3' UTR (NM_052869, exon 8 of 8)	3' UTR (NM_052869, exon 8 of 8)	12024	NM_052869	94015	Hs.27935	NM_032646	ENSG00000141540	TTYH2	C17orf29	tweety family member 2	protein-coding
14.0121	chr1	40483830	40484329	+	0	NA	Intergenic	LTR41|LTR|ERVL	-22176	NM_001105530	10487	Hs.370581	NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	adenylate cyclase associated protein 1	protein-coding
2.35077-2	chr18	20861773	20862272	+	0	NA	Intergenic	Intergenic	126233	NM_138375	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
0.9691-5	chr4	7072381	7072880	+	0	NA	Intergenic	Intergenic	-2693	NM_025196	80273	Hs.443723	NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
5.10042-5	chr16	57220040	57220539	+	0	NA	promoter-TSS (NM_001305182)	promoter-TSS (NM_001305182)	93	NM_133368	89970	Hs.460885	NM_133368	ENSG00000159579	RSPRY1	SEMDFA	ring finger and SPRY domain containing 1	protein-coding
1.38466-13	chr6	161590760	161591259	+	0	NA	intron (NM_020133, intron 2 of 8)	MLT2F|LTR|ERVL	-7995	NR_024277	79992	Hs.664873	NM_024929	ENSG00000279355	AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
0.231917-34	chr6	168770848	168771347	+	0	NA	Intergenic	Intergenic	-50663	NM_001286351	168002	Hs.673059	NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
1.04025-7	chr20	57445231	57445730	+	0	NA	intron (NR_126334, intron 3 of 4)	intron (NR_126334, intron 3 of 4)	17444	NM_001309883	2778	Hs.125898	NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|POH|SCG6|SgVI	GNAS complex locus	protein-coding
0.362122-9	chr6	138189016	138189515	+	0	NA	non-coding (NR_049793, exon 1 of 4)	non-coding (NR_049793, exon 1 of 4)	105	NR_049793	100130476	Hs.598050	NR_049793	ENSG00000237499	LOC100130476	-	uncharacterized LOC100130476	ncRNA
3.41035-12	chr6	167120529	167121028	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-80013	NM_021135	6196	Hs.655277	NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
0.136762-12	chr15	23810817	23811316	+	0	NA	exon (NM_005664, exon 1 of 1)	exon (NM_005664, exon 1 of 1)	612	NM_005664	7681	Hs.72964	NM_005664	ENSG00000179455	MKRN3	CPPB2|D15S9|RNF63|ZFP127|ZNF127	makorin ring finger protein 3	protein-coding
15.0724-4	chr8	129799810	129800309	+	0	NA	Intergenic	Intergenic	-223134	NR_121672	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
3.58526-6	chr10	69644108	69644607	+	0	NA	promoter-TSS (NM_012238)	promoter-TSS (NM_012238)	-70	NM_012238	23411	Hs.369779	NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
1.57391-17	chr3	126755092	126755936	+	0	NA	3' UTR (NM_032242, exon 31 of 31)	3' UTR (NM_032242, exon 31 of 31)	48077	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
0.990869-11	chr2	97464758	97465257	+	0	NA	TTS (NR_036074)	TTS (NR_036074)	992	NR_036074	100422928		NR_036074	ENSG00000264157	MIR3127	mir-3127	microRNA 3127	ncRNA
14.2713	chr22	20360331	20360830	+	0	NA	intron (NR_136572, intron 3 of 5)	intron (NR_136572, intron 3 of 5)	-17089	NM_001242313	728229	Hs.376511	NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
0.109954-15	chr3	99929549	99930048	+	0	NA	Intergenic	Intergenic	25130	NR_028357	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30CP	CDC50C|TMEM30C	transmembrane protein 30C, pseudogene	pseudo
6.30784-6	chr11	124042710	124043209	+	0	NA	Intergenic	Intergenic	-52385	NM_001291438	26492	Hs.381319	NM_001291438		OR8G2	HSTPCR120|OR8G2P|OR8G4|ORL206|ORL486|TPCR120	olfactory receptor family 8 subfamily G member 2	protein-coding
0.629839-17	chr11	100998686	100999185	+	0	NA	promoter-TSS (NR_073144)	promoter-TSS (NR_073144)	859	NR_073142	5241	Hs.32405	NM_000926	ENSG00000082175	PGR	NR3C3|PR	progesterone receptor	protein-coding
9.1364-2	chr10	134350586	134351085	+	0	NA	promoter-TSS (NM_005539)	promoter-TSS (NM_005539)	-448	NM_005539	3632	Hs.523360	NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
2.58061-8	chr9	133569057	133569556	+	0	NA	intron (NM_001282708, intron 1 of 7)	CpG	159	NM_001282708	23404	Hs.654643	NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|hRrp4p|p7	exosome component 2	protein-coding
17.6195-3	chr14	30599925	30600424	+	0	NA	Intergenic	Intergenic	-203226	NM_001330069	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
1.75874-4	chr8	103973518	103974017	+	0	NA	intron (NR_126339, intron 2 of 2)	intron (NR_126339, intron 2 of 2)	-59481	NM_001695	528	Hs.86905	NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
1.53663-9	chr17	38703525	38704024	+	0	NA	Intergenic	Intergenic	12872	NM_001301718	1236	Hs.370036	NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
11.4327	chr6	168559173	168559672	+	0	NA	Intergenic	Intergenic	67775	NR_134590	105378137	Hs.549668	NR_134590	ENSG00000237987	LOC105378137	-	uncharacterized LOC105378137	ncRNA
1.35489-16	chr5	13987892	13988391	+	0	NA	Intergenic	Intergenic	-43552	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding
0.819697-5	chr1	54066138	54066637	+	0	NA	intron (NM_147193, intron 1 of 9)	intron (NM_147193, intron 1 of 9)	133490	NM_147193	148979	Hs.306691	NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
1.22053-5	chr4	111117026	111117525	+	0	NA	intron (NM_001130721, intron 2 of 4)	intron (NM_001130721, intron 2 of 4)	2496	NM_001130721	79071	Hs.412939	NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
0.241089-5	chr13	98932430	98932929	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	71901	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
0.296531-92	chr17	48556011	48556510	+	0	NA	promoter-TSS (NM_018346)	promoter-TSS (NM_018346)	99	NM_018346	55316	Hs.8033	NM_018346	ENSG00000136444	RSAD1	-	radical S-adenosyl methionine domain containing 1	protein-coding
3.22393-16	chr1	224989617	224990116	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-127490	NM_001373	127602	Hs.133977	NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein axonemal heavy chain 14	protein-coding
1.88425-13	chr12	49318370	49318869	+	0	NA	promoter-TSS (NM_001143781)	promoter-TSS (NM_001143781)	45	NM_001143781	51303	Hs.655103	NM_016594	ENSG00000134285	FKBP11	FKBP19	FK506 binding protein 11	protein-coding
29.393-6	chr11	112292531	112293030	+	0	NA	Intergenic	Intergenic	-60175	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
4.32974-4	chr9	5886043	5886542	+	0	NA	Intergenic	Intergenic	-4617	NM_005511	2315	Hs.154069	NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
8.21023-10	chr9	33423934	33424433	+	0	NA	Intergenic	SVA_E|Other|Other	-21503	NM_001318156	364	Hs.455323	NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
1.13509-9	chr19	2096651	2097150	+	0	NA	promoter-TSS (NM_130807)	promoter-TSS (NM_130807)	32	NM_001031735	113177	Hs.424049	NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
0.510982-3	chr14	50358996	50359994	+	0	NA	promoter-TSS (NM_001663)	promoter-TSS (NM_001663)	-241	NM_001663	382	Hs.525330	NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
0.0966115-21	chr7	116442808	116443307	+	0	NA	Intergenic	Intergenic	-59506	NM_006136	830	Hs.446123	NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line alpha subunit 2	protein-coding
10.9098-2	chr13	108370131	108370630	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	117426	NR_046848	100874375	Hs.653972	NR_046848		FAM155A-IT1	-	FAM155A intronic transcript 1	ncRNA
9.914-4	chr21	34570950	34571449	+	0	NA	Intergenic	Intergenic	-28658	NR_024102	728409	Hs.125234	NR_024102	ENSG00000229086	LINC01548	C21orf54	long intergenic non-protein coding RNA 1548	ncRNA
0.555173-5	chr6	30068453	30068952	+	0	NA	Intergenic	CpG	-4315	NR_126470	104533120	Hs.548919	NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
0.287242-6	chr1	156882842	156883341	+	0	NA	intron (NM_001080471, intron 19 of 22)	intron (NM_001080471, intron 19 of 22)	-7333	NM_144702	149499	Hs.491734	NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
26.4975-6	chr18	44256335	44256834	+	0	NA	Intergenic	Intergenic	-19588	NM_144612	125336	Hs.345877	NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology domains 1	protein-coding
0.296531-102	chr19_gl000208_random	88890	89389	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
8.79426-6	chr17	43403653	43404396	+	0	NA	Intergenic	Intergenic	-9594	NM_003954	9020	Hs.404183	NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
14.2022-3	chr1	243895923	243896422	+	0	NA	intron (NM_001206729, intron 2 of 13)	intron (NM_001206729, intron 2 of 13)	110412	NM_181690	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
32.5885-3	chr18	75523386	75523885	+	0	NA	Intergenic	Intergenic	182048	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
8.26814-22	chr6	20401315	20401814	+	0	NA	promoter-TSS (NM_001949)	promoter-TSS (NM_001949)	-573	NM_001949	1871	Hs.269408	NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
0.550241-24	chr2	221124382	221124881	+	0	NA	Intergenic	Intergenic	-353345	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
3.22393-4	chr1	198127636	198128135	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	1777	NM_133494	140609	Hs.24119	NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
1.15771-14	chr2	38603724	38604223	+	0	NA	promoter-TSS (NM_001308076)	promoter-TSS (NM_001308076)	-301	NM_001330459	64225	Hs.594950	NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
0.589858-3	chr2	135077229	135077728	+	0	NA	intron (NM_002410, intron 4 of 15)	intron (NM_002410, intron 4 of 15)	65648	NM_002410	4249	Hs.4988	NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
0.809219-12	chr19	19144331	19144830	+	0	NA	promoter-TSS (NM_001321699)	promoter-TSS (NM_001321699)	193	NM_001199196	93436	Hs.77876	NM_033415	ENSG00000105676	ARMC6	R30923_1	armadillo repeat containing 6	protein-coding
5.01689-10	chr16	79006213	79006712	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	628160	NM_001031804	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
1.05684-2	chr15	91167489	91167988	+	0	NA	intron (NR_120372, intron 3 of 3)	intron (NR_120372, intron 3 of 3)	-35727	NR_120371	101929765	Hs.615348	NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
1.79799-10	chr20	47314363	47314862	+	0	NA	intron (NM_020820, intron 7 of 39)	intron (NM_020820, intron 7 of 39)	129808	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
0.101054-34	chr2	201450330	201450829	+	0	NA	promoter-TSS (NM_001159)	promoter-TSS (NM_001159)	-152	NM_001159	316	Hs.406238	NM_001159	ENSG00000138356	AOX1	AO|AOH1	aldehyde oxidase 1	protein-coding
1.20904-9	chr14	35709430	35709929	+	0	NA	intron (NM_001256681, intron 3 of 5)	intron (NM_001256681, intron 3 of 5)	-38085	NM_001282234	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome subunit alpha 6	protein-coding
40.942	chr6	82778401	82778900	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	178821	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
14.9485-9	chr22	29742620	29743119	+	0	NA	intron (NM_001127, intron 11 of 22)	MLT1K|LTR|ERVL-MaLR	-13613	NR_037426	100500833		NR_037426	ENSG00000280968	MIR3653	mir-3653	microRNA 3653	ncRNA
18.8606-6	chr5	126851268	126851767	+	0	NA	Intergenic	L2a|LINE|L2	-1784	NM_130809	133619	Hs.483259	NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
18.3565-3	chr1	86968332	86968831	+	0	NA	Intergenic	Intergenic	34055	NM_001285	1179	Hs.194659	NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
10.4528-3	chr7	127601765	127602264	+	0	NA	intron (NM_014390, intron 15 of 23)	intron (NM_014390, intron 15 of 23)	-35548	NR_027330	27099	Hs.657377	NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
2.80669-4	chr12	125579450	125579949	+	0	NA	intron (NM_023928, intron 5 of 17)	intron (NM_023928, intron 5 of 17)	29786	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
5.04456-6	chr2	212046204	212046703	+	0	NA	Intergenic	Intergenic	564158	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
0.856568-21	chr20	36034899	36035398	+	0	NA	Intergenic	CpG	60617	NM_198291	6714	Hs.195659	NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
0.352691-13	chr4	154006222	154006721	+	0	NA	Intergenic	Intergenic	-67799	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
0.741724-8	chr9	68749776	68750275	+	0	NA	intron (NR_136306, intron 4 of 4)	LTR16C|LTR|ERVL	23484	NR_034006	100132352	Hs.231861	NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
1.12383-6	chr6	24400700	24401199	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2187	NR_104423	57380	Hs.658612	NM_020662	ENSG00000124532	MRS2	HPT|MRS2L	MRS2, magnesium transporter	protein-coding
3.39135-4	chrX	128249018	128249517	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	408215	NM_001282875	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
3.37242-17	chr21	28058545	28059044	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-113071	NM_052954	116159	Hs.37445	NM_052954	ENSG00000166265	CYYR1	C21orf95	cysteine and tyrosine rich 1	protein-coding
6.43974-4	chr6	5775038	5775537	+	0	NA	Intergenic	Intergenic	-79782	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
0.00434512-45	chr22	29698619	29699118	+	0	NA	Intergenic	Intergenic	-4117	NM_006478	10634	Hs.322852	NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
6.65546-7	chr11	106792284	106792783	+	0	NA	intron (NM_001256424, intron 4 of 8)	L2c|LINE|L2	96638	NM_001256424	2977	Hs.24321	NM_000855	ENSG00000152402	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1 soluble subunit alpha 2	protein-coding
1.37272-28	chr7	145812626	145813125	+	0	NA	promoter-TSS (NM_014141)	promoter-TSS (NM_014141)	-578	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
1.51195-28	chr2	112493792	112494291	+	0	NA	Intergenic	Intergenic	34670	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
3.86158	chr9	21988375	21988874	+	0	NA	intron (NM_058195, intron 1 of 2)	L1PA16|LINE|L1	5866	NM_058195	1029	Hs.512599	NM_000077	ENSG00000147889	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
6.96804-8	chr15	76443126	76443625	+	0	NA	intron (NM_152335, intron 3 of 10)	intron (NM_152335, intron 3 of 10)	30452	NR_120360	101929439	Hs.631721	NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
3.6251-3	chr15	56403387	56403886	+	0	NA	intron (NM_022841, intron 4 of 8)	SVA_D|Other|Other	-117692	NM_006154	4734	Hs.1565	NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
0.0612309-2	chr1	231670478	231670977	+	0	NA	intron (NR_028398, intron 2 of 10)	intron (NR_028398, intron 2 of 10)	6328	NR_028397	100303453	Hs.13318	NR_028393	ENSG00000270106	TSNAX-DISC1	-	TSNAX-DISC1 readthrough (NMD candidate)	ncRNA
6.28932-4	chr4	140992035	140992534	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	82949	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
14.4249-4	chr18	46065050	46065549	+	0	NA	promoter-TSS (NM_001142397)	promoter-TSS (NM_001142397)	-128	NM_001142397	9811	Hs.145230	NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
0.0744648-34	chr6	111195091	111195590	+	0	NA	promoter-TSS (NR_109768)	promoter-TSS (NR_109768)	-647	NR_109768	262	Hs.159118	NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
1.37869-6	chr19	6199313	6199812	+	0	NA	Intergenic	SUBTEL_sa|Satellite|Satellite	63918	NM_001289180	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
2.82329-5	chr17	7118150	7118649	+	0	NA	intron (NR_135527, intron 3 of 20)	intron (NR_135527, intron 3 of 20)	-2045	NM_001270447	37	Hs.437178	NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase, very long chain	protein-coding
3.02771-7	chr6	3231847	3232831	+	0	NA	Intergenic	Intergenic	-4371	NM_178012	347733	Hs.300701	NM_178012	ENSG00000137285	TUBB2B	PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
4.32974-8	chr15	29045390	29045889	+	0	NA	intron (NR_037599, intron 3 of 13)	intron (NR_037599, intron 3 of 13)	10659	NR_037599	646278	Hs.590143	NR_037599		PDCD6IPP2	-	PDCD6IP pseudogene 2	pseudo
6.57577-3	chr15	81115393	81115892	+	0	NA	intron (NM_018689, intron 1 of 28)	intron (NM_018689, intron 1 of 28)	18772	NR_030393	693132		NR_030393	ENSG00000208003	MIR549A	MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a	microRNA 549a	ncRNA
0.181814-20	chr22	35568359	35568858	+	0	NA	intron (NR_126356, intron 2 of 5)	MER5B|DNA|hAT-Charlie	58441	NR_126356	104310353	Hs.581009	NR_126356	ENSG00000233080	LINC01399	-	long intergenic non-protein coding RNA 1399	ncRNA
5.83359-12	chr5	76325945	76326444	+	0	NA	promoter-TSS (NM_018046)	promoter-TSS (NM_018046)	-16	NM_018046	55109	Hs.634849	NM_018046	ENSG00000164252	AGGF1	GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q	angiogenic factor with G-patch and FHA domains 1	protein-coding
1.36083	chr10	129474661	129475160	+	0	NA	Intergenic	AluJb|SINE|Alu	-60628	NM_207426	399823	Hs.449674	NM_207426	ENSG00000186766	FOXI2	-	forkhead box I2	protein-coding
4.1005-3	chr22	21355885	21356384	+	0	NA	promoter-TSS (NR_027052)	promoter-TSS (NR_027052)	-77	NR_027051	439931	Hs.517430	NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
0.79355-23	chr1	154850859	154851358	+	0	NA	Intergenic	Intergenic	-8354	NM_002249	3782	Hs.490765	NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
12.1968-5	chr6	80520464	80520963	+	0	NA	intron (NR_131786, intron 2 of 4)	Tigger16b|DNA|TcMar-Tigger	1250	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
4.55932-8	chrX	39623499	39623998	+	0	NA	Intergenic	Intergenic	103278	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
0.0436481-18	chr5	65892491	65892990	+	0	NA	exon (NM_001164664, exon 1 of 29)	exon (NM_001164664, exon 1 of 29)	564	NM_198828	375449	Hs.595458	NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
6.96804-5	chr19	38643550	38644049	+	0	NA	intron (NM_015073, intron 13 of 21)	intron (NM_015073, intron 13 of 21)	71091	NM_001135155	8193	Hs.631576	NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	double PHD fingers 1	protein-coding
6.34512-5	chr10	122558326	122558825	+	0	NA	intron (NR_033850, intron 1 of 2)	SVA_B|Other|Other	-52112	NM_018117	55717	Hs.144447	NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
0.310503-39	chr1	219444808	219445307	+	0	NA	Intergenic	Intergenic	96746	NM_001300772	127018	Hs.657617	NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
17.0774	chr5	1596528	1597027	+	0	NA	TTS (NR_003713)	TTS (NR_003713)	-2131	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
19.5861-7	chr18	72160804	72161303	+	0	NA	Intergenic	Intergenic	-2447	NM_018235	55748	Hs.149185	NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding
3.28827-9	chr3	182458426	182458925	+	0	NA	Intergenic	Intergenic	-52616	NM_014616	23200	Hs.478429	NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
23.5853-8	chr4	41454785	41455284	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	-85140	NM_001330672	22998	Hs.335163	NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2.67606-5	chr5	71603995	71604494	+	0	NA	intron (NM_015084, intron 2 of 10)	CpG	11840	NM_015084	23107	Hs.482491	NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt	mitochondrial ribosomal protein S27	protein-coding
6.32644-8	chr20	55129818	55130317	+	0	NA	Intergenic	Intergenic	21765	NM_001013646	388799	Hs.287759	NM_001013646	ENSG00000213714	FAM209B	C20orf107|dJ1153D9.4	family with sequence similarity 209 member B	protein-coding
10.3386	chr6	42757533	42758032	+	0	NA	intron (NR_134654, intron 1 of 1)	intron (NR_134654, intron 1 of 1)	6548	NR_134654	401261	Hs.656652	NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
9.06578-3	chr1	242056972	242057471	+	0	NA	Intergenic	AluJo|SINE|Alu	45188	NM_006027	9156	Hs.498248	NM_003686	ENSG00000174371	EXO1	HEX1|hExoI	exonuclease 1	protein-coding
0.467237-27	chr5	38715450	38716223	+	0	NA	non-coding (NR_104631, exon 3 of 5)	non-coding (NR_104631, exon 3 of 5)	4539	NR_104631	101926904	Hs.634191	NR_104631	ENSG00000249740	LINC01265	-	long intergenic non-protein coding RNA 1265	ncRNA
0.798767-17	chr2	109744387	109744886	+	0	NA	non-coding (NR_029193, exon 1 of 1)	non-coding (NR_029193, exon 1 of 1)	-1361	NM_001099289	344558	Hs.171244	NM_001099289	ENSG00000172985	SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
0.48177-43	chr2	71148902	71149401	+	0	NA	intron (NM_012476, intron 2 of 2)	MIR|SINE|MIR	-13847	NM_001692	525	Hs.64173	NM_001692	ENSG00000116039	ATP6V1B1	ATP6B1|RTA1B|VATB|VMA2|VPP3	ATPase H+ transporting V1 subunit B1	protein-coding
1.54902-4	chr12	24716413	24716912	+	0	NA	Intergenic	Intergenic	-1138	NM_152989	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding
0.540393-19	chr3	159480744	159481243	+	0	NA	intron (NM_001197108, intron 1 of 6)	CpG	5408	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
0.629839-7	chr14	74238475	74238974	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-11723	NM_194278	91748	Hs.594157	NM_194278	ENSG00000156030	ELMSAN1	C14orf117|C14orf43|LSR68|MIDEAS|c14_5541	ELM2 and Myb/SANT domain containing 1	protein-coding
0.0833099-16	chrX	19001816	19002315	+	0	NA	5' UTR (NM_000292, exon 1 of 33)	5' UTR (NM_000292, exon 1 of 33)	415	NM_000292	5256	Hs.54941	NM_000292	ENSG00000044446	PHKA2	GSD9A|PHK|PYK|PYKL|XLG|XLG2	phosphorylase kinase regulatory subunit alpha 2	protein-coding
0.245682	chr6	123659354	123659853	+	0	NA	intron (NM_006073, intron 21 of 40)	MLT1G3|LTR|ERVL-MaLR	-101146	NR_110844	101927990	Hs.660877	NR_110844		HRAT13	-	heart tissue-associated transcript 13	ncRNA
0.93665-17	chr5	89853669	89854168	+	0	NA	promoter-TSS (NM_032119)	promoter-TSS (NM_032119)	-699	NR_003149	84059	Hs.591777	NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
2.52588-18	chr12	213812	214311	+	0	NA	intron (NM_015232, intron 2 of 12)	CpG	27519	NM_015232	440073	Hs.536319	NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain 3	protein-coding
0.0392635-19	chr11	122527302	122527801	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	1153	NM_032873	84959	Hs.444075	NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
3.55561-10	chr14	86946745	86947244	+	0	NA	Intergenic	AluJb|SINE|Alu	-425128	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
0.291884-13	chr10	113992987	113993486	+	0	NA	Intergenic	Intergenic	-49699	NM_001244949	57678	Hs.42586	NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
0.181814-27	chr1	9277957	9278456	+	0	NA	Intergenic	Intergenic	-16657	NM_004285	9563	Hs.463511	NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
3.28827-3	chr11	125461656	125462155	+	0	NA	promoter-TSS (NM_001278503)	promoter-TSS (NM_001278503)	558	NR_132372	105369550	Hs.732083	NR_132372	ENSG00000254671	STT3A-AS1	-	STT3A antisense RNA 1	ncRNA
2.93282-6	chr19	51672392	51672891	+	0	NA	intron (NR_047529, intron 4 of 6)	LTR13|LTR|ERVK	2056	NR_047529	284367	Hs.132045	NR_002804	ENSG00000171101	SIGLEC17P	HSPC078|SIGLECP2|SIGLECP3	sialic acid binding Ig like lectin 17, pseudogene	pseudo
1.20904-15	chr5	16776679	16777178	+	0	NA	intron (NM_012334, intron 9 of 40)	intron (NM_012334, intron 9 of 40)	159457	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
5.85027-11	chr14	95441179	95441678	+	0	NA	Intergenic	Intergenic	158412	NM_001195573	23405	Hs.87889	NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|HERNA|K12H4.8-LIKE|MNG1|RMSE2	dicer 1, ribonuclease III	protein-coding
2.47184-12	chr19	1275586	1276085	+	0	NA	intron (NM_017914, intron 1 of 2)	CpG	315	NM_017914	55009	Hs.591383	NM_017914	ENSG00000228300	C19orf24	-	chromosome 19 open reading frame 24	protein-coding
1.52427	chr6	91004900	91005399	+	0	NA	intron (NM_021813, intron 1 of 8)	CpG	1478	NM_001170794	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
13.4199-5	chr1	11508824	11509323	+	0	NA	Intergenic	Intergenic	-30222	NM_020780	57540	Hs.202355	NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
4.25969-18	chrX	18904337	18904836	+	0	NA	Intergenic	Intergenic	-3828	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
0.0305075-72	chr7	91146693	91147192	+	0	NA	Intergenic	Intergenic	253159	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
0.851282-12	chr3	11102365	11102864	+	0	NA	Intergenic	Intergenic	-41704	NR_046647	100874090	Hs.628542	NR_046647	ENSG00000232287	SLC6A1-AS1	-	SLC6A1 antisense RNA 1	ncRNA
3.49692-15	chr11	122713857	122714356	+	0	NA	intron (NM_019604, intron 1 of 9)	intron (NM_019604, intron 1 of 9)	4900	NM_019604	56253	Hs.159523	NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T-cell molecule	protein-coding
0.15923-31	chr1	1368861	1369360	+	0	NA	intron (NR_125994, intron 1 of 1)	intron (NR_125994, intron 1 of 1)	843	NR_125994	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
2.42604-6	chr15	55581054	55581553	+	0	NA	intron (NM_183235, intron 1 of 6)	intron (NM_183235, intron 1 of 6)	710	NM_183235	5873	Hs.626665	NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
0.675262-22	chr6	31830458	31830957	+	0	NA	promoter-TSS (NM_000434).4	promoter-TSS (NM_000434).4	2	NM_000434	4758	Hs.520037	NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
0.254883-20	chr15	30107583	30108082	+	0	NA	intron (NM_001301025, intron 2 of 28)	intron (NM_001301025, intron 2 of 28)	5919	NM_001301026	7082	Hs.743990	NM_003257	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
0.80399-2	chr22	21773779	21774278	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	2335	NM_015094	23119	Hs.632767	NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
11.1126	chr6	13524954	13525453	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-37334	NM_018988	54438	Hs.484686	NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
0.634863-17	chr15	75948261	75948760	+	0	NA	intron (NM_001318146, intron 2 of 2)	intron (NM_001318146, intron 2 of 2)	7162	NM_001318146	257364	Hs.8705	NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
7.74691-4	chr16	87520921	87521420	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	4290	NM_015144	23174	Hs.156231	NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
3.05395-14	chr9	138173478	138173977	+	0	NA	Intergenic	Intergenic	-61368	NM_173520	157927	Hs.559511	NM_173520		C9orf62	-	chromosome 9 open reading frame 62	protein-coding
8.9279-4	chr7	29849095	29849594	+	0	NA	intron (NM_001080529, intron 1 of 8)	intron (NM_001080529, intron 1 of 8)	3174	NM_001080529	644150	Hs.380698	NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
26.073-3	chr1	180163838	180164337	+	0	NA	intron (NM_001004128, intron 11 of 12)	intron (NM_001004128, intron 11 of 12)	-3057	NR_026900	200058	Hs.719176	NR_026900		FLJ23867	-	uncharacterized protein FLJ23867	ncRNA
0.91515-21	chr1	119384750	119385249	+	0	NA	Intergenic	Intergenic	145477	NM_001330677	6913	Hs.146196	NM_152380	ENSG00000092607	TBX15	TBX14	T-box 15	protein-coding
0.0130484-27	chr3	14473333	14473832	+	0	NA	intron (NM_001134367, intron 10 of 22)	intron (NM_001134367, intron 10 of 22)	29506	NM_001134368	6533	Hs.529488	NM_003043	ENSG00000131389	SLC6A6	TAUT	solute carrier family 6 member 6	protein-coding
7.28158-4	chr16	56434219	56434718	+	0	NA	intron (NM_001323512, intron 8 of 14)	intron (NM_001323512, intron 8 of 14)	24439	NM_001323511	267	Hs.295137	NM_001144	ENSG00000159461	AMFR	GP78|RNF45	autocrine motility factor receptor	protein-coding
3.40084-18	chr18	12271547	12272046	+	0	NA	intron (NR_134607, intron 4 of 5)	CpG	17436	NR_134607	1149	Hs.249129	NM_001279	ENSG00000176194	CIDEA	CIDE-A	cell death-inducing DFFA-like effector a	protein-coding
0.9691-2	chr16	67184757	67185256	+	0	NA	promoter-TSS (NM_033309)	promoter-TSS (NM_033309)	-104	NM_033309	84752	Hs.744158	NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
5.12862-5	chr11	31325070	31325569	+	0	NA	intron (NM_181807, intron 6 of 8)	intron (NM_181807, intron 6 of 8)	66038	NM_181807	341019	Hs.127405	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
4.65974-2	chrX	152765226	152765725	+	0	NA	intron (NM_001711, intron 1 of 7)	intron (NM_001711, intron 1 of 7)	-4492	NR_073156	55559	Hs.170835	NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
20.2045-3	chr12	13880627	13881126	+	0	NA	intron (NM_000834, intron 3 of 12)	intron (NM_000834, intron 3 of 12)	252146	NM_000834	2904	Hs.504844	NM_000834	ENSG00000273079	GRIN2B	EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate ionotropic receptor NMDA type subunit 2B	protein-coding
5.10042-2	chr16	30773210	30773709	+	0	NA	promoter-TSS (NM_001286572)	promoter-TSS (NM_001286572)	106	NM_001014979	90835	Hs.724010	NM_001014979	ENSG00000196118	CCDC189	C16orf93	coiled-coil domain containing 189	protein-coding
0.414361-21	chr3	194981483	194981982	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	10163	NM_152531	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
0.154727-8	chr20	23704235	23704734	+	0	NA	Intergenic	Intergenic	27090	NM_001898	1469	Hs.123114	NM_001898	ENSG00000170373	CST1	-	cystatin SN	protein-coding
0.47692-4	chr17	58250734	58251233	+	0	NA	intron (NR_137422, intron 10 of 11)	intron (NR_137422, intron 10 of 11)	23686	NR_137422	762	Hs.89485	NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
5.01689-13	chr1	224370640	224371139	+	0	NA	promoter-TSS (NM_003676)	promoter-TSS (NM_003676)	-21	NM_001321541	8560	Hs.299878	NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
1.67491-14	chr6	66411688	66412187	+	0	NA	intron (NM_001142801, intron 1 of 11)	intron (NM_001142801, intron 1 of 11)	5181	NM_001292009	346007	Hs.25067	NM_198283	ENSG00000188107	EYS	C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1	eyes shut homolog (Drosophila)	protein-coding
0.0480371-3	chr2	36824634	36825133	+	0	NA	intron (NM_005102, intron 1 of 7)	CpG	449	NM_001042548	9637	Hs.258563	NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding
2.26945-4	chr17	70466355	70466854	+	0	NA	intron (NR_137281, intron 1 of 4)	intron (NR_137281, intron 1 of 4)	122339	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
5.33132-8	chr17	46024250	46024749	+	0	NA	3' UTR (NM_018129, exon 7 of 7)	3' UTR (NM_018129, exon 7 of 7)	5610	NM_018129	55163	Hs.631742	NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
1.26098-2	chr6	113972255	113972754	+	0	NA	Intergenic	Intergenic	-1227	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA
4.02305-5	chr18	35158736	35159235	+	0	NA	Intergenic	Intergenic	-12985	NM_001025087	56853	Hs.435976	NM_020180	ENSG00000101489	CELF4	BRUNOL4|CELF-4	CUGBP, Elav-like family member 4	protein-coding
0.136762-9	chr2	175895648	175896147	+	0	NA	Intergenic	Intergenic	-25790	NR_038133	1123	Hs.380138	NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
0.33389-11	chr12	13428160	13428659	+	0	NA	Intergenic	Intergenic	78807	NM_001423	2012	Hs.719042	NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
0.132283-21	chr7	73245327	73245826	+	0	NA	exon (NM_001305, exon 1 of 1)	exon (NM_001305, exon 1 of 1)	383	NM_001305	1364	Hs.647036	NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
16.3451-3	chr14	36908777	36909276	+	0	NA	Intergenic	Intergenic	73964	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
1.63043-4	chr5	139682644	139683143	+	0	NA	promoter-TSS (NM_002622)	promoter-TSS (NM_002622)	-204	NM_002622	5201	Hs.483564	NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
3.50665-4	chr14	42368801	42369300	+	0	NA	intron (NR_144389, intron 6 of 6)	intron (NR_144389, intron 6 of 6)	292991	NR_144388	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
7.30487	chr17	1303352	1303851	+	0	NA	promoter-TSS (NM_006761)	promoter-TSS (NM_006761)	-45	NM_006761	7531	Hs.513851	NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
4.08935-6	chr15	57611587	57612086	+	0	NA	intron (NR_120337, intron 1 of 4)	intron (NR_120337, intron 1 of 4)	500	NR_120337	101928611	Hs.569495	NR_120337		LINC01413	-	long intergenic non-protein coding RNA 1413	ncRNA
1.45087-13	chr14	102976220	102976719	+	0	NA	promoter-TSS (NM_152326)	promoter-TSS (NM_152326)	-341	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
1.35489-15	chr3	64016304	64016803	+	0	NA	Intergenic	Intergenic	-6867	NM_001271780	9861	Hs.152536	NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
0.851282-11	chr2	67839792	67840291	+	0	NA	Intergenic	Intergenic	212653	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
3.58526-9	chr11	34361203	34361702	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	18103	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
7.54487-7	chr7	139245414	139245913	+	0	NA	TTS (NM_022740)	TTS (NM_022740)	36989	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
0.634863-16	chr15	65127784	65128283	+	0	NA	Intergenic	CpG	-6049	NM_025201	80301	Hs.709337	NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
3.85103	chr17	61556202	61556701	+	0	NA	exon (NM_000789, exon 3 of 25)	exon (NM_000789, exon 3 of 25)	2029	NM_000789	1636	Hs.298469	NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1	angiotensin I converting enzyme	protein-coding
2.78189-16	chr1	33358355	33358854	+	0	NA	intron (NM_002143, intron 2 of 3)	CpG	6506	NM_002143	3208	Hs.632391	NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
0.0305075-46	chr1	167656949	167657448	+	0	NA	intron (NM_052862, intron 3 of 6)	intron (NM_052862, intron 3 of 6)	-33989	NM_003953	9019	Hs.493919	NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
0.979971-16	chr2	170590047	170590546	+	0	NA	promoter-TSS (NM_144711)	promoter-TSS (NM_144711)	-60	NM_144711	151230	Hs.655150	NM_144711	ENSG00000213160	KLHL23	DITHP	kelch like family member 23	protein-coding
3.85103-9	chr14	21537334	21537833	+	0	NA	promoter-TSS (NM_001278529)	promoter-TSS (NM_001278529)	-836	NM_001278530	55701	Hs.35125	NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor 40	protein-coding
4.02305-3	chr7	157890310	157890809	+	0	NA	intron (NM_130843, intron 9 of 21)	intron (NM_130843, intron 9 of 21)	243282	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
2.10419-5	chr10	74057649	74058148	+	0	NA	Intergenic	CpG	24221	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
0.419142-40	chr2	25502036	25502535	+	0	NA	intron (NM_022552, intron 4 of 22)	intron (NM_022552, intron 4 of 22)	-27101	NM_153759	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
2.13249-14	chr1	235256813	235257312	+	0	NA	Intergenic	L2c|LINE|L2	34190	NR_002956	677802	Hs.744743	NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
0.958256-9	chr8	140416866	140417365	+	0	NA	Intergenic	Intergenic	298184	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
15.3165-5	chr13	90551488	90551987	+	0	NA	Intergenic	Intergenic	220234	NR_047489	100874187	Hs.564526	NR_047489	ENSG00000261446	LINC00559	-	long intergenic non-protein coding RNA 559	ncRNA
0.177288-14	chr3	24179395	24179894	+	0	NA	intron (NM_001252634, intron 9 of 11)	intron (NM_001252634, intron 9 of 11)	-13171	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA
3.39135-17	chr5	7436575	7437074	+	0	NA	intron (NM_020546, intron 2 of 24)	intron (NM_020546, intron 2 of 24)	40481	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
35.376	chr12	70238049	70238548	+	0	NA	intron (NM_182530, intron 1 of 24)	intron (NM_182530, intron 1 of 24)	19195	NM_182530	196446	Hs.253773	NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor-like	protein-coding
3.74688-16	chr8	28446539	28447038	+	0	NA	Intergenic	Intergenic	58821	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
18.3268-5	chr7	116654641	116655140	+	0	NA	intron (NM_018412, intron 1 of 14)	intron (NM_018412, intron 1 of 14)	-5375	NR_106748	102466616		NR_106748	ENSG00000004866	MIR6132	hsa-mir-6132	microRNA 6132	ncRNA
7.25842-8	chr6	81049891	81050390	+	0	NA	intron (NR_134945, intron 10 of 10)	intron (NR_134945, intron 10 of 10)	233813	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
10.9963-4	chr1	36690160	36690659	+	0	NA	intron (NM_005119, intron 1 of 11)	intron (NM_005119, intron 1 of 11)	392	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
14.9485-14	chr5	505960	506459	+	0	NA	intron (NM_004174, intron 1 of 16)	intron (NM_004174, intron 1 of 16)	18340	NM_001284351	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
3.90406-8	chr8	140031854	140032353	+	0	NA	Intergenic	Intergenic	-105854	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
0.366845-17	chr9	138174017	138174516	+	0	NA	Intergenic	Intergenic	-60829	NM_173520	157927	Hs.559511	NM_173520		C9orf62	-	chromosome 9 open reading frame 62	protein-coding
4.698-3	chr6	33265293	33265792	+	0	NA	intron (NM_001243738, intron 1 of 16).5	intron (NM_001243738, intron 1 of 16).5	1623	NM_001243738	5863	Hs.509622	NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
6.32644-16	chr19	47949135	47949634	+	0	NA	intron (NM_015063, intron 4 of 9)	intron (NM_015063, intron 4 of 9)	-23894	NM_001346148	56917	Hs.380923	NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
0.883098-9	chr2	38968002	38968501	+	0	NA	Intergenic	Intergenic	10385	NM_001195446	6432	Hs.309090	NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
2.66001-4	chr1	151118722	151119221	+	0	NA	5' UTR (NM_001178062, exon 1 of 19)	5' UTR (NM_001178062, exon 1 of 19)	169	NM_030913	10500	Hs.516316	NM_030913	ENSG00000143434	SEMA6C	SEMAY|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
0.34328-23	chr7	16627193	16627692	+	0	NA	Intergenic	LTR9|LTR|ERV1	58000	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
0.958256-6	chr20	43513502	43514001	+	0	NA	promoter-TSS (NM_139323)	promoter-TSS (NM_139323)	-489	NM_139323	7529	Hs.643544	NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
6.17983	chrUn_gl000235	1936	2435	+	0	NA	NA	CpG	NA	NA								
0.254883-51	chr8	104634786	104635285	+	0	NA	intron (NM_001100117, intron 1 of 23)	intron (NM_001100117, intron 1 of 23)	122059	NM_001100117	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
0.530567-10	chr12	57619136	57619635	+	0	NA	exon (NM_007224, exon 2 of 2)	exon (NM_007224, exon 2 of 2)	-3971	NM_005412	6472	Hs.741179	NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|SHMT	serine hydroxymethyltransferase 2	protein-coding
5.0724-16	chr14	107094746	107095245	+	0	NA	Intergenic	Intergenic	2279	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
5.39102-5	chr1	226297690	226298189	+	0	NA	Intergenic	CpG	47511	NR_002315	440926	Hs.533624	NR_002315		H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
0.48177-35	chr16	4103830	4104329	+	0	NA	intron (NM_001116, intron 2 of 10)	L2a|LINE|L2	62107	NM_001116	115	Hs.391860	NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
0.0130484-16	chr20	31395417	31395916	+	0	NA	exon (NM_175848, exon 22 of 22)	exon (NM_175848, exon 22 of 22)	-12033	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
30.0349-5	chr8	93765401	93765900	+	0	NA	intron (NR_046114, intron 1 of 2)	intron (NR_046114, intron 1 of 2)	32638	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
0.222764-5	chr3	167740337	167740836	+	0	NA	intron (NM_014498, intron 14 of 15)	intron (NM_014498, intron 14 of 15)	73127	NM_001308155	27333	Hs.143600	NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
0.0392635-38	chr3	22775755	22776254	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	468065	NR_136177	100505877	Hs.125904	NR_136176	ENSG00000233153	UBE2E2-AS1	-	UBE2E2 antisense RNA 1 (head to head)	ncRNA
2.44888-5	chr14	100095049	100095548	+	0	NA	intron (NM_001329411, intron 2 of 8)	intron (NM_001329411, intron 2 of 8)	-16149	NM_001127258	84439	Hs.131714	NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
0.118872-43	chr12	49463488	49463987	+	0	NA	promoter-TSS (NM_001303126)	promoter-TSS (NM_001303126)	71	NM_144593	121268	Hs.159013	NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	Ras homolog enriched in brain like 1	protein-coding
0.310503-5	chr11	6724616	6725115	+	0	NA	Intergenic	Intergenic	18245	NR_003945	387751	Hs.494757	NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
0.545314-25	chr12	98372949	98373448	+	0	NA	Intergenic	L1MA4A|LINE|L1	16028	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA
2.10419-2	chr16	67204467	67204966	+	0	NA	TTS (NM_001538)	TTS (NM_001538)	316	NM_001276319	8996	Hs.513667	NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
3.81952-14	chr1	80168066	80168565	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-695820	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ADGRL4	ELTD1|ETL|KPG_003	adhesion G protein-coupled receptor L4	protein-coding
4.03403-8	chr9	137257997	137258496	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-12895	NM_001291920	6256	Hs.590886	NM_002957	ENSG00000186350	RXRA	NR2B1	retinoid X receptor alpha	protein-coding
11.1748	chr8	38299775	38300274	+	0	NA	intron (NM_001174064, intron 2 of 18)	intron (NM_001174064, intron 2 of 18)	25339	NM_001174067	2260	Hs.264887	NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
35.9688	chr15	102040106	102040605	+	0	NA	Intergenic	Intergenic	-10168	NM_001291309	5046	Hs.498494	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
3.9794-11	chr4	46513047	46513546	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-121211	NM_001286827	2555	Hs.48372	NM_000807	ENSG00000151834	GABRA2	-	gamma-aminobutyric acid type A receptor alpha2 subunit	protein-coding
0.371573-24	chr5	10111571	10112070	+	0	NA	Intergenic	L1MC4|LINE|L1	138201	NR_047669	134145	Hs.481569	NM_199133	ENSG00000150756	FAM173B	JS-2	family with sequence similarity 173 member B	protein-coding
0.757207-6	chr17	2806350	2806849	+	0	NA	intron (NM_001330058, intron 2 of 24)	intron (NM_001330058, intron 2 of 24)	62590	NR_110818	101927911	Hs.626373	NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
14.0782	chr7	154181474	154181973	+	0	NA	intron (NM_001936, intron 3 of 25)	intron (NM_001936, intron 3 of 25)	179426	NM_001290252	1804	Hs.490684	NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
0.329203-2	chr12	117470227	117470999	+	0	NA	Intergenic	Intergenic	-45471	NR_103809	100506551	Hs.657861	NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
8.041-5	chr3	111643076	111643575	+	0	NA	intron (NM_001134437, intron 6 of 17)	intron (NM_001134437, intron 6 of 17)	-54398	NR_073571	55347	Hs.477115	NM_018394	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10	protein-coding
21.7587	chr15	31764246	31764745	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	145437	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
0.181814-10	chr5	178913489	178913988	+	0	NA	Intergenic	Intergenic	-63824	NM_025158	80230	Hs.306769	NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
3.31614-12	chr16	1877028	1877527	+	0	NA	promoter-TSS (NM_001040427)	promoter-TSS (NM_001040427)	52	NM_001142398	81889	Hs.513265	NM_031208	ENSG00000180185	FAHD1	C16orf36|YISKL	fumarylacetoacetate hydrolase domain containing 1	protein-coding
0.888424-27	chr20	20532682	20533181	+	0	NA	intron (NM_020343, intron 23 of 39)	intron (NM_020343, intron 23 of 39)	160335	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding
0.560111-16	chr11	82766518	82767017	+	0	NA	intron (NM_014488, intron 1 of 5)	MLT1A1|LTR|ERVL-MaLR	-14127	NR_033347	100379250	Hs.725115	NR_033347	ENSG00000207221	SNORA70E	U70E	small nucleolar RNA, H/ACA box 70E	snoRNA
3.87216-4	chr12	113750196	113750695	+	0	NA	intron (NM_001330466, intron 10 of 14)	intron (NM_001330466, intron 10 of 14)	21117	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
0.79355-28	chr2	238804672	238805171	+	0	NA	intron (NM_001308353, intron 3 of 3)	intron (NM_001308353, intron 3 of 3)	36734	NM_001308353	10267	Hs.471783	NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
0.79355-14	chr19	4375051	4375550	+	0	NA	intron (NM_003025, intron 1 of 9)	MIR3|SINE|MIR	25115	NM_001199944	6455	Hs.97616	NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
0.550241-7	chr20	48124182	48124681	+	0	NA	3' UTR (NM_000961, exon 10 of 10)	3' UTR (NM_000961, exon 10 of 10)	-25250	NM_004975	3745	Hs.84244	NM_004975	ENSG00000158445	KCNB1	DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
6.45892-6	chr1	211752482	211752981	+	0	NA	promoter-TSS (NM_021194)	promoter-TSS (NM_021194)	-632	NM_021194	7779	Hs.519469	NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
1.9044-5	chr14	102512662	102513161	+	0	NA	intron (NM_001376, intron 72 of 77)	intron (NM_001376, intron 72 of 77)	40601	NM_005348	3320	Hs.525600	NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
19.7469-5	chr16	58120504	58121003	+	0	NA	Intergenic	MIRb|SINE|MIR	42543	NM_013242	29105	Hs.532755	NM_013242	ENSG00000070761	CFAP20	C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
0.268721-29	chr2	1878237	1878736	+	0	NA	intron (NM_001329845, intron 18 of 24)	intron (NM_001329845, intron 18 of 24)	-130167	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
15.4516	chrX	10278456	10278955	+	0	NA	Intergenic	Intergenic	153720	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
21.8111	chr13	31378499	31378998	+	0	NA	intron (NR_047012, intron 1 of 1)	intron (NR_047012, intron 1 of 1)	1405	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
1.2436-21	chr11	119020066	119020565	+	0	NA	promoter-TSS (NM_001142505)	promoter-TSS (NM_001142505)	16	NM_001142505	64137	Hs.126378	NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
2.04815-17	chr2	120068391	120068890	+	0	NA	intron (NM_001322332, intron 4 of 4)	intron (NM_001322332, intron 4 of 4)	55678	NM_001322329	130355	Hs.99488	NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
0.545314-15	chrX	139223515	139224014	+	0	NA	Intergenic	Intergenic	49938	NM_001271560	389895	Hs.127679	NM_001271560		LOC389895	-	chromosome 16 open reading frame 72-like	protein-coding
4.74955-10	chr9	140205591	140206090	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-9137	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
4.19075	chr9	95087198	95088251	+	0	NA	promoter-TSS (NM_001012267)	promoter-TSS (NM_001012267)	-26	NM_001286969	401541	Hs.713775	NM_001012267	ENSG00000188312	CENPP	CENP-P	centromere protein P	protein-coding
1.79142-6	chr10	72680253	72680752	+	0	NA	Intergenic	Intergenic	-18308	NR_134314	105378349	Hs.119164	NR_134313	ENSG00000259267	LOC105378349	-	uncharacterized LOC105378349	ncRNA
0.186345-13	chr6	27046564	27047063	+	0	NA	Intergenic	MER61B|LTR|ERV1	53762	NM_021058	8970	Hs.591807	NM_021058	ENSG00000124635	HIST1H2BJ	H2B/r|H2BFR|H2BJ	histone cluster 1 H2B family member j	protein-coding
10.7058-2	chr15	49103710	49104209	+	0	NA	promoter-TSS (NM_001194998)	promoter-TSS (NM_001194998)	-616	NM_001194998	22995	Hs.443005	NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
0.428718-11	chr17	48707862	48708361	+	0	NA	Intergenic	Intergenic	-4107	NM_003786	8714	Hs.463421	NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
13.8091-2	chr18	31739229	31739728	+	0	NA	intron (NM_001198546, intron 1 of 9)	CpG	62956	NM_001198547	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
1.11821-3	chr17	19880734	19881233	+	0	NA	exon (NM_007202, exon 1 of 15)	exon (NM_007202, exon 1 of 15)	186	NM_001330152	11216	Hs.642676	NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
0.8302-4	chr2	223184286	223184785	+	0	NA	promoter-TSS (NR_136639)	promoter-TSS (NR_136639)	-845	NR_136641	440934	Hs.732732	NR_136638	ENSG00000237732	LOC440934	-	uncharacterized LOC440934	ncRNA
2.09715-9	chr5	148737193	148737692	+	0	NA	promoter-TSS (NM_001301054)	promoter-TSS (NM_001301054)	-128	NM_001301057	78991	Hs.644397	NM_024028	ENSG00000145882	PCYOX1L	-	prenylcysteine oxidase 1 like	protein-coding
5.45155	chr10	73634886	73635385	+	0	NA	Intergenic	SVA_D|Other|Other	-24003	NM_001042465	5660	Hs.523004	NM_002778	ENSG00000197746	PSAP	GLBA|SAP1	prosaposin	protein-coding
3.50665-6	chr7	113858267	113858766	+	0	NA	intron (NR_033766, intron 1 of 19)	intron (NR_033766, intron 1 of 19)	132151	NR_033766	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
9.50782	chr8	121823841	121824340	+	0	NA	5' UTR (NM_021021, exon 1 of 7)	5' UTR (NM_021021, exon 1 of 7)	219	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
1.63676-10	chr11	65244797	65245296	+	0	NA	Intergenic	CpG	-20163	NR_002819	378938	Hs.621695	NR_002819		MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	ncRNA
0.979971-22	chr11	63933417	63933916	+	0	NA	promoter-TSS (NM_014067)	promoter-TSS (NM_014067)	-81	NM_014067	28992	Hs.602898	NM_014067	ENSG00000133315	MACROD1	LRP16	MACRO domain containing 1	protein-coding
0.101054-42	chr9	129373759	129374258	+	0	NA	Intergenic	CpG	-2714	NM_001174147	4010	Hs.129133	NM_002316	ENSG00000136944	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
5.96879-12	chr1	212588002	212588501	+	0	NA	promoter-TSS (NM_001198862)	promoter-TSS (NM_001198862)	-8	NM_001198862	55248	Hs.445386	NM_018252	ENSG00000065600	TMEM206	C1orf75	transmembrane protein 206	protein-coding
0.172766-37	chr4	140549185	140549684	+	0	NA	Intergenic	Intergenic	-37488	NM_001204368	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
0.366845-15	chr3	195361637	195362136	+	0	NA	Intergenic	CpG	17144	NR_136186	105374297	Hs.655175	NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
5.78396-14	chr2	198363489	198364356	+	0	NA	promoter-TSS (NM_002157)	promoter-TSS (NM_002157)	718	NM_002156	3329	Hs.595053	NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding
0.496351-4	chrX	69440141	69440640	+	0	NA	Intergenic	Intergenic	-14115	NM_001013579	158833	Hs.407641	NM_001013579	ENSG00000204195	AWAT1	DGA2|DGAT2L3	acyl-CoA wax alcohol acyltransferase 1	protein-coding
2.35077-4	chr10	89621469	89622423	+	0	NA	exon (NM_001126049, exon 1 of 1)	exon (NM_001126049, exon 1 of 1)	1248	NM_001126049	100144748	Hs.559820	NM_001126049	ENSG00000227268	KLLN	CWS4|KILLIN	killin, p53-regulated DNA replication inhibitor	protein-coding
2.16811	chr2	8286408	8286907	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-169712	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
0.181814-30	chr16	11292627	11293126	+	0	NA	Intergenic	Intergenic	57163	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
5.40608-4	chr8	126346481	126346980	+	0	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	-95833	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
20.2411	chr1	156687165	156687664	+	0	NA	Intergenic	MIR|SINE|MIR	10817	NM_001303095	81875	Hs.301904	NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
14.2136	chr22	21643513	21644012	+	0	NA	intron (NR_024583, intron 3 of 6)	intron (NR_024583, intron 3 of 6)	6976	NR_136575	102724728	Hs.735161	NR_136575		LOC102724728	-	POM121 transmembrane nucleoporin pseudogene	pseudo
0.15923-2	chr1	220101168	220101667	+	0	NA	non-coding (NR_046437, exon 1 of 4)	non-coding (NR_046437, exon 1 of 4)	576	NM_018713	55532	Hs.284450	NM_018713	ENSG00000196660	SLC30A10	HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30 member 10	protein-coding
0.291884	chr1	202157990	202158489	+	0	NA	intron (NR_002930, intron 21 of 21)	intron (NR_002930, intron 21 of 21)	-4879	NM_001017403	59352	Hs.497402	NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
3.83-8	chr11	33976372	33976871	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-62785	NM_005574	4005	Hs.34560	NM_005574	ENSG00000135363	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
0.132283-38	chr17	28618148	28618647	+	0	NA	exon (NM_000386, exon 2 of 12)	exon (NM_000386, exon 2 of 12)	787	NM_000386	642	Hs.371914	NM_000386	ENSG00000108578	BLMH	BH|BMH	bleomycin hydrolase	protein-coding
5.34617-4	chr1	22939103	22939602	+	0	NA	Intergenic	Intergenic	20507	NR_106742	102466615		NR_106742	ENSG00000276835	MIR6127	hsa-mir-6127	microRNA 6127	ncRNA
3.0103-8	chr2	70141649	70142148	+	0	NA	promoter-TSS (NM_001202514)	promoter-TSS (NM_001202514)	-275	NM_001202513	4084	Hs.468908	NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
2.67606-4	chr4	106227265	106227764	+	0	NA	intron (NR_126420, intron 2 of 5)	intron (NR_126420, intron 2 of 5)	46524	NR_126420	104384744	Hs.624109	NR_126420		TET2-AS1	-	TET2 antisense RNA 1	ncRNA
0.0261362-15	chr17	70553016	70553515	+	0	NA	intron (NR_137281, intron 1 of 4)	intron (NR_137281, intron 1 of 4)	35678	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
0.0392635-24	chr13	30770128	30770627	+	0	NA	Intergenic	Intergenic	-43166	NR_138041	102157400	Hs.639879	NR_138041	ENSG00000232117	LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
4.4855-6	chr22	49547722	49548221	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	285389	NR_038944	100128946	Hs.535676	NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
6.55608-7	chr3	124407593	124408092	+	0	NA	intron (NM_001024660, intron 51 of 59)	intron (NM_001024660, intron 51 of 59)	-41371	NM_000373	7372	Hs.2057	NM_000373	ENSG00000114491	UMPS	OPRT	uridine monophosphate synthetase	protein-coding
1.97911-6	chr9	129961388	129961887	+	0	NA	intron (NM_014636, intron 14 of 18)	intron (NM_014636, intron 14 of 18)	-64304	NM_001286779	84253	Hs.29304	NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
1.2436-15	chr18	832087	832586	+	0	NA	Intergenic	Intergenic	-20009	NM_005433	7525	Hs.194148	NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
26.2893-2	chr2	98758881	98759380	+	0	NA	intron (NR_144296, intron 7 of 28)	L4|LINE|RTE	-6828	NM_001345864	200403	Hs.269977	NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
1.53663-44	chr14	44618698	44619197	+	0	NA	Intergenic	Intergenic	357552	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
19.4692-3	chr8	25692500	25692999	+	0	NA	Intergenic	Intergenic	209891	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
0.438316-27	chr22	45497642	45498141	+	0	NA	Intergenic	Intergenic	50574	NR_038957	100506714	Hs.189902	NR_038956		NUP50-AS1	-	NUP50 antisense RNA 1 (head to head)	ncRNA
2.24026-14	chr22	21983429	21983928	+	0	NA	exon (NM_001017964, exon 3 of 5)	exon (NM_001017964, exon 3 of 5)	662	NM_001017964	150223	Hs.355952	NM_001017964	ENSG00000161179	YDJC	-	YdjC homolog (bacterial)	protein-coding
19.4692	chr21	33709335	33709834	+	0	NA	intron (NM_014825, intron 27 of 38)	intron (NM_014825, intron 27 of 38)	40047	NR_002996	677846	Hs.712293	NR_002996	ENSG00000200792	SNORA80A	ACA67|SNORA80	small nucleolar RNA, H/ACA box 80A	snoRNA
0.496351-30	chr19	42748752	42749251	+	0	NA	Intergenic	CpG	-2265	NM_019884	2931	Hs.466828	NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
0.00434512-6	chr7	114054093	114054592	+	0	NA	promoter-TSS (NR_033767)	promoter-TSS (NR_033767)	-710	NM_001172766	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
33.5262	chr12	19762858	19763357	+	0	NA	Intergenic	L1PA15|LINE|L1	169592	NM_001267043	121536	Hs.126497	NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
6.36388-10	chr7	154887998	154888497	+	0	NA	Intergenic	SVA_A|Other|Other	-24980	NR_038945	100128264	Hs.248137	NR_038945	ENSG00000220575	HTR5A-AS1	HTR5AOS	HTR5A antisense RNA 1	ncRNA
8.56985-5	chr9	101652470	101652969	+	0	NA	Intergenic	Intergenic	-53276	NM_001855	1306	Hs.409034	NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
1.19186-6	chr6	157881873	157882372	+	0	NA	intron (NM_153746, intron 1 of 8)	intron (NM_153746, intron 1 of 8)	-68042	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
2.79014-23	chr10	12267736	12268235	+	0	NA	intron (NM_006023, intron 6 of 12)	SVA_B|Other|Other	-29842	NM_001321647	11164	Hs.555956	NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hNUDT5	nudix hydrolase 5	protein-coding
2.77366-2	chr14	104028100	104028599	+	0	NA	promoter-TSS (NM_001302654)	promoter-TSS (NM_001302654)	306	NM_004873	9529	Hs.5443	NM_004873	ENSG00000166170	BAG5	BAG-5	BCL2 associated athanogene 5	protein-coding
12.321-3	chr10	81689115	81689614	+	0	NA	intron (NR_033857, intron 5 of 5)	intron (NR_033857, intron 5 of 5)	9430	NR_002724	8512	Hs.733579	NR_002724	ENSG00000242600	MBL1P	COLEC3P|MBL1P1	mannose binding lectin 1, pseudogene	pseudo
12.652	chr3	17734852	17735351	+	0	NA	intron (NM_001134381, intron 1 of 23)	L1PA3|LINE|L1	6411	NM_001134381	9779	Hs.475629	NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
0.93665-6	chr5	1437537	1438036	+	0	NA	intron (NM_001044, intron 3 of 14)	intron (NM_001044, intron 3 of 14)	7757	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 member 3	protein-coding
12.7737-5	chr12	11805028	11805527	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	2489	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
1.50581-31	chr11	18720460	18720959	+	0	NA	intron (NM_153347, intron 1 of 2)	CpG	427	NM_153347	144110	Hs.502100	NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
0.32452-20	chr17	40770503	40771002	+	0	NA	Intergenic	Intergenic	-9307	NM_178126	162427	Hs.632262	NM_178126	ENSG00000141699	FAM134C	-	family with sequence similarity 134 member C	protein-coding
0.376307-32	chr12	94581257	94581756	+	0	NA	intron (NM_005761, intron 4 of 30)	intron (NM_005761, intron 4 of 30)	39007	NM_005761	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
2.09715-3	chr8	19794347	19794846	+	0	NA	Intergenic	Intergenic	-1986	NM_000237	4023	Hs.180878	NM_000237	ENSG00000175445	LPL	HDLCQ11|LIPD	lipoprotein lipase	protein-coding
11.891-2	chr1	205335208	205335707	+	0	NA	Intergenic	Intergenic	-6923	NR_038425	284576	Hs.585440	NR_038425	ENSG00000226235	LEMD1-AS1	-	LEMD1 antisense RNA 1	ncRNA
2.18963-28	chrX	108780116	108780615	+	0	NA	promoter-TSS (NM_001242618)	promoter-TSS (NM_001242618)	18	NM_001242618	55916	Hs.25010	NM_018698	ENSG00000101888	NXT2	P15-2	nuclear transport factor 2 like export factor 2	protein-coding
0.273344-4	chr2	113699241	113699740	+	0	NA	Intergenic	Intergenic	26720	NM_173205	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
18.2102	chr12	3223257	3223756	+	0	NA	intron (NM_006675, intron 2 of 8)	MER58B|DNA|hAT-Charlie	36985	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
7.39929-5	chr6	155421139	155421638	+	0	NA	intron (NM_012454, intron 1 of 25)	intron (NM_012454, intron 1 of 25)	9965	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
2.29148-3	chr22	21336105	21336604	+	0	NA	promoter-TSS (NM_006767)	promoter-TSS (NM_006767)	-204	NM_006767	8216	Hs.78788	NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|SWNTS2	leucine zipper like transcription regulator 1	protein-coding
0.070049-8	chr8	91885339	91885838	+	0	NA	intron (NM_022351, intron 4 of 12)	intron (NM_022351, intron 4 of 12)	81667	NM_022351	64168	Hs.719466	NM_022351	ENSG00000123119	NECAB1	EFCBP1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
1.55523-10	chr9	86152236	86152735	+	0	NA	intron (NM_001244959, intron 1 of 14)	CpG	863	NM_174938	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
0.856568-35	chr9	80567908	80568407	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	78208	NM_002072	2776	Hs.269782	NM_002072	ENSG00000156052	GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
3.08035-4	chr3	122712609	122713108	+	0	NA	promoter-TSS (NM_001256346)	promoter-TSS (NM_001256346)	-738	NM_001256346	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
1.23205-7	chr15	90541346	90541845	+	0	NA	Intergenic	Intergenic	-3128	NM_198526	374655	Hs.459311	NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
7.56962-16	chr2	20414160	20414659	+	0	NA	intron (NM_001006946, intron 2 of 5)	intron (NM_001006946, intron 2 of 5)	10518	NM_002997	6382	Hs.224607	NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
1.22053-14	chr17	38256649	38257148	+	0	NA	promoter-TSS (NM_021724)	promoter-TSS (NM_021724)	80	NM_021724	9572	Hs.724	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
1.66853-8	chr7	44225287	44225786	+	0	NA	intron (NM_000162, intron 1 of 9)	intron (NM_000162, intron 1 of 9)	3486	NM_000162	2645	Hs.1270	NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase	protein-coding
3.90406-7	chr9	138688048	138688547	+	0	NA	Intergenic	Intergenic	94266	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
0.070049-56	chr14	65289880	65290379	+	0	NA	promoter-TSS (NM_001024858)	promoter-TSS (NM_001024858)	-263	NM_000347	6710	Hs.417303	NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding
1.04577-4	chr1	144535134	144535633	+	0	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	77336	NR_003242	767846	Hs.657186	NR_003242	ENSG00000270392	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
0.154727-18	chr2	196279169	196279668	+	0	NA	Intergenic	L1M1|LINE|L1	-242114	NM_001127257	57181	Hs.650158	NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2	solute carrier family 39 member 10	protein-coding
0.0877392-47	chr3	179753565	179754982	+	0	NA	intron (NM_001256752, intron 1 of 13)	intron (NM_001256752, intron 1 of 13)	568	NM_001256753	51555	Hs.235331	NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding
3.22393-24	chr7	21942528	21943027	+	0	NA	intron (NM_001127370, intron 9 of 10)	intron (NM_001127370, intron 9 of 10)	42765	NM_001127370	55536	Hs.744069	NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
0.371573-23	chr2	75937723	75938222	+	0	NA	promoter-TSS (NM_001201334)	promoter-TSS (NM_001201334)	139	NM_001201335	6936	Hs.303808	NM_003203	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
0.0524306-8	chr1	224803578	224804077	+	0	NA	promoter-TSS (NM_152495)	promoter-TSS (NM_152495)	-352	NM_001322305	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
12.2621-2	chr2	206494038	206494537	+	0	NA	Intergenic	Intergenic	-52937	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
1.18615-4	chr19	4246739	4247238	+	0	NA	promoter-TSS (NM_018074)	promoter-TSS (NM_018074)	-79	NM_018074	55702	Hs.21811	NM_018074	ENSG00000105248	CCDC94	-	coiled-coil domain containing 94	protein-coding
13.7675	chr6	104248127	104248626	+	0	NA	Intergenic	Intergenic	1059045	NM_001321083	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
5.78396	chr2	119994033	119994532	+	0	NA	intron (NM_182915, intron 2 of 5)	intron (NM_182915, intron 2 of 5)	12365	NR_046721	100874111	Hs.704682	NR_046721	ENSG00000229867	STEAP3-AS1	-	STEAP3 antisense RNA 1	ncRNA
2.98432-9	chr8	140789271	140789770	+	0	NA	intron (NM_031466, intron 21 of 22)	L2c|LINE|L2	-74221	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
1.51195-8	chr17	48172345	48172844	+	0	NA	promoter-TSS (NM_001199900)	promoter-TSS (NM_001199900)	-45	NM_002611	5164	Hs.256667	NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
5.9176	chr3	140151214	140151713	+	0	NA	intron (NM_022131, intron 5 of 16)	intron (NM_022131, intron 5 of 16)	76168	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
4.05607-4	chr18	14009906	14010405	+	0	NA	Intergenic	SVA_D|Other|Other	-94449	NM_001291911	4158	Hs.248144	NM_000529	ENSG00000185231	MC2R	ACTHR	melanocortin 2 receptor	protein-coding
3.99027-15	chr8	120994883	120995382	+	0	NA	intron (NM_022783, intron 4 of 8)	MLT1J|LTR|ERVL-MaLR	109237	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR interacting protein	protein-coding
0.385789-26	chr12	124993228	124993727	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	58533	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
0.190881-14	chr16	687396	687895	+	0	NA	Intergenic	Intergenic	-1279	NM_001040162	84326	Hs.239500	NM_032366	ENSG00000130731	METTL26	C16orf13|JFP2	methyltransferase like 26	protein-coding
1.12946-19	chr6	138892734	138893233	+	0	NA	exon (NM_020464, exon 1 of 7)	exon (NM_020464, exon 1 of 7)	685	NM_020464	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
0.0966115-22	chr4	89140147	89140646	+	0	NA	intron (NM_001257386, intron 1 of 15)	intron (NM_001257386, intron 1 of 15)	12078	NM_001257386	9429	Hs.480218	NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding
0.0261362-5	chr1	207808928	207809427	+	0	NA	intron (NM_000651, intron 46 of 46)	LTR5_Hs|LTR|ERVK	-9281	NM_175710	1379	Hs.628568	NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
2.61219-3	chr2	3826571	3827070	+	0	NA	intron (NM_001287444, intron 9 of 10)	intron (NM_001287444, intron 9 of 10)	75638	NM_001287444	728597	Hs.304233	NM_001287444	ENSG00000214866	DCDC2C	-	doublecortin domain containing 2C	protein-coding
5.90067-6	chr15	102249545	102250044	+	0	NA	intron (NM_152334, intron 5 of 18)	L2a|LINE|L2	14851	NM_152334	123283	Hs.657163	NM_152334	ENSG00000185418	TARSL2	-	threonyl-tRNA synthetase like 2	protein-coding
2.58061-9	chr18	3049972	3050471	+	0	NA	Intergenic	SVA_B|Other|Other	-38276	NM_014646	9663	Hs.132342	NM_014646	ENSG00000101577	LPIN2	-	lipin 2	protein-coding
9.39302-17	chr14	73203375	73203874	+	0	NA	intron (NM_012074, intron 3 of 9)	intron (NM_012074, intron 3 of 9)	155733	NM_001280544	8110	Hs.162868	NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4	double PHD fingers 3	protein-coding
2.89037-5	chr15	101255088	101255587	+	0	NA	Intergenic	MIR|SINE|MIR	112582	NM_024708	140460	Hs.31845	NM_024708	ENSG00000183475	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
6.07303-3	chr14	91090504	91091003	+	0	NA	intron (NM_001320421, intron 15 of 20)	intron (NM_001320421, intron 15 of 20)	-18220	NR_110134	101928909	Hs.662545	NR_110134	ENSG00000259163	LOC101928909	-	uncharacterized LOC101928909	ncRNA
2.55707-14	chr11	57566413	57566912	+	0	NA	intron (NM_001085461, intron 6 of 18)	intron (NM_001085461, intron 6 of 18)	37428	NM_001085467	1500	Hs.166011	NM_001331	ENSG00000198561	CTNND1	CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
0.783135-20	chr14	55569819	55570318	+	0	NA	Intergenic	Intergenic	-25867	NM_001177388	3958	Hs.531081	NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
2.43364	chr17	74632905	74633404	+	0	NA	intron (NR_110309, intron 1 of 7)	SVA_B|Other|Other	6766	NM_001289107	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding
1.70053-18	chr7	11871765	11872264	+	0	NA	promoter-TSS (NM_015204)	promoter-TSS (NM_015204)	-190	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin type 1 domain containing 7A	protein-coding
2.18963-6	chr19	21958997	21959496	+	0	NA	Intergenic	SVA_D|Other|Other	-8816	NM_173531	163227	Hs.365142	NM_173531	ENSG00000197020	ZNF100	-	zinc finger protein 100	protein-coding
7.90485-9	chr2	55878475	55878974	+	0	NA	intron (NM_033109, intron 18 of 27)	SVA_D|Other|Other	-33864	NM_020463	57223	Hs.516182	NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
7.25842-3	chr18	12243704	12244203	+	0	NA	Intergenic	SVA_A|Other|Other	-10365	NM_001279	1149	Hs.249129	NM_001279	ENSG00000176194	CIDEA	CIDE-A	cell death-inducing DFFA-like effector a	protein-coding
27.0997-2	chr17	43367463	43367962	+	0	NA	intron (NM_003954, intron 2 of 15)	intron (NM_003954, intron 2 of 15)	26718	NM_003954	9020	Hs.404183	NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
1.95861-12	chr5	41925642	41926141	+	0	NA	intron (NM_001297437, intron 1 of 5)	intron (NM_001297437, intron 1 of 5)	535	NM_012176	26272	Hs.165575	NM_012176	ENSG00000151876	FBXO4	FBX4	F-box protein 4	protein-coding
6.25252-2	chr4	41259196	41259695	+	0	NA	promoter-TSS (NR_102709)	promoter-TSS (NR_102709)	547	NM_004181	7345	Hs.518731	NM_004181	ENSG00000154277	UCHL1	HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|Uch-L1	ubiquitin C-terminal hydrolase L1	protein-coding
1.52427-3	chrX	39917866	39918365	+	0	NA	intron (NM_001123384, intron 9 of 13)	intron (NM_001123384, intron 9 of 13)	38604	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
8.50781-13	chr1	208259797	208260296	+	0	NA	intron (NM_025179, intron 9 of 31)	intron (NM_025179, intron 9 of 31)	157619	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
15.0724-3	chr16	64662125	64662624	+	0	NA	Intergenic	L1PBa|LINE|L1	493666	NM_001797	1009	Hs.116471	NM_001797	ENSG00000140937	CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11	protein-coding
0.273344	chr11	131976187	131976686	+	0	NA	intron (NM_001144058, intron 1 of 7)	intron (NM_001144058, intron 1 of 7)	-177760	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
0.33389-9	chr18	70766979	70767478	+	0	NA	Intergenic	L2c|LINE|L2	164505	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	ncRNA
0.525663-3	chr1	246526729	246527228	+	0	NA	intron (NM_001167740, intron 1 of 11)	SVA_D|Other|Other	53736	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
2.83162-3	chr9	19229886	19230385	+	0	NA	promoter-TSS (NM_017925)	promoter-TSS (NM_017925)	-353	NM_001330640	55667	Hs.249591	NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
4.62181-2	chr1	175686625	175687124	+	0	NA	intron (NM_001328635, intron 1 of 22)	intron (NM_001328635, intron 1 of 22)	25878	NM_003285	7143	Hs.659864	NM_003285	ENSG00000116147	TNR	TN-R	tenascin R	protein-coding
14.1567-5	chr12	75972184	75972683	+	0	NA	Intergenic	L2a|LINE|L2	-67015	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
1.91114-6	chr2	27682795	27683294	+	0	NA	intron (NM_015662, intron 23 of 47)	LTR5_Hs|LTR|ERVK	17811	NM_173853	200634	Hs.59509	NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
0.979971-11	chr22	43196669	43197585	+	0	NA	intron (NM_001142293, intron 13 of 14)	L2b|LINE|L2	56281	NM_001142293	26286	Hs.685225	NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
0.589858-30	chr4	185396077	185396576	+	0	NA	promoter-TSS (NM_002199)	promoter-TSS (NM_002199)	-600	NM_002199	3660	Hs.654566	NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
0.798767-22	chr17	72213113	72213612	+	0	NA	intron (NM_001330453, intron 1 of 13)	intron (NM_001330453, intron 1 of 13)	1607	NM_001330453	94015	Hs.27935	NM_032646	ENSG00000141540	TTYH2	C17orf29	tweety family member 2	protein-coding
0.510982-12	chr9	136855756	136856255	+	0	NA	intron (NM_001134398, intron 1 of 29)	intron (NM_001134398, intron 1 of 29)	1441	NM_001134398	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
7.21246-11	chr11	81902651	81903150	+	0	NA	intron (NR_120571, intron 3 of 7)	intron (NR_120571, intron 3 of 7)	212055	NR_120571	101928989	Hs.145117	NR_120571	ENSG00000245832	MIR4300HG	-	MIR4300 host gene	ncRNA
1.33122-27	chr14	82722935	82723434	+	0	NA	Intergenic	Intergenic	-633779	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
3.15155-10	chr4	187646983	187647482	+	0	NA	Intergenic	CpG-20331	-2245	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
8.82729-7	chr12	123977139	123977638	+	0	NA	intron (NM_001319243, intron 4 of 7)	LTR5_Hs|LTR|ERVK	27385	NM_001319244	353116	Hs.530315	NM_178314	ENSG00000188026	RILPL1	GOSPEL|RLP1	Rab interacting lysosomal protein like 1	protein-coding
12.0971-3	chr12	7341886	7342385	+	0	NA	promoter-TSS (NM_001131023)	promoter-TSS (NM_001131023)	-147	NM_001131024	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
6.55608-8	chr12	28343128	28344267	+	0	NA	intron (NM_018318, intron 1 of 12)	CpG	337	NM_018318	55297	Hs.653125	NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding
0.245682-34	chr9	134361378	134361877	+	0	NA	TTS (NR_002914)	TTS (NR_002914)	575	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
1.62412-3	chr1	175307621	175308120	+	0	NA	intron (NM_001328635, intron 18 of 22)	intron (NM_001328635, intron 18 of 22)	-145641	NM_001319230	9674	Hs.518138	NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
4.31798-10	chr16	73398786	73399285	+	0	NA	Intergenic	Intergenic	-21669	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LINC01568	-	long intergenic non-protein coding RNA 1568	ncRNA
1.54282-7	chr12	109124095	109124594	+	0	NA	intron (NM_014325, intron 1 of 10)	CpG	275	NM_001276471	23603	Hs.330384	NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
19.5861-5	chr11	92484648	92485147	+	0	NA	intron (NM_001008781, intron 3 of 24)	L3|LINE|CR1	163897	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
10.4576-3	chr5	43522689	43523188	+	0	NA	Intergenic	SVA_D|Other|Other	-7665	NM_198566	375444	Hs.661641	NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
5.08638-7	chr2	223263119	223263618	+	0	NA	Intergenic	Intergenic	-25403	NM_001320834	130367	Hs.210043	NM_152386	ENSG00000163082	SGPP2	SPP2|SPPase2	sphingosine-1-phosphate phosphatase 2	protein-coding
0.0436481-24	chr7	130795752	130796251	+	0	NA	intron (NM_001145354, intron 1 of 18)	intron (NM_001145354, intron 1 of 18)	1146	NM_001145354	4289	Hs.44693	NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
2.51037-18	chr8	61703553	61704052	+	0	NA	intron (NM_017780, intron 3 of 37)	intron (NM_017780, intron 3 of 37)	49984	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
1.94499	chr19	34992364	34992863	+	0	NA	TTS (NM_001080436)	TTS (NM_001080436)	19733	NM_001080436	126374	Hs.585010	NM_001080436	ENSG00000142279	WTIP	-	Wilms tumor 1 interacting protein	protein-coding
21.1351	chr1	59014138	59014637	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-1916	NM_145243	115209	Hs.425769	NM_145243	ENSG00000162600	OMA1	2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase	OMA1 zinc metallopeptidase	protein-coding
0.0130484-15	chr6	8063833	8064332	+	0	NA	intron (NR_037618, intron 3 of 6)	CpG	565	NM_201280	63915	Hs.719272	NM_201280	ENSG00000188428	BLOC1S5	BLOS5|MU|MUTED	biogenesis of lysosomal organelles complex 1 subunit 5	protein-coding
0.0217692-18	chr6	71748604	71749103	+	0	NA	Intergenic	L2c|LINE|L2	-82065	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
8.79426-9	chr5	14868824	14869323	+	0	NA	intron (NM_054027, intron 1 of 11)	intron (NM_054027, intron 1 of 11)	2814	NM_054027	56172	Hs.156727	NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
0.695604-3	chr15	71054977	71055476	+	0	NA	intron (NM_018003, intron 1 of 18)	CpG	624	NM_018003	55075	Hs.108049	NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
1.73925	chr15	100295869	100296368	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-22469	NM_001284419	145748	Hs.562568	NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
0.141246-32	chr20	3870039	3870538	+	0	NA	promoter-TSS (NM_001324193)	promoter-TSS (NM_001324193)	-161	NM_001324193	80025	Hs.114180	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
0.385789-29	chr9	136398128	136398627	+	0	NA	intron (NM_001145320, intron 1 of 18)	MIRc|SINE|MIR	1091	NM_001145320	9719	Hs.522543	NM_014694	ENSG00000197859	ADAMTSL2	GPHYSD1	ADAMTS like 2	protein-coding
14.5346	chr7	33556735	33557234	+	0	NA	intron (NM_001033604, intron 19 of 21)	LTR16C|LTR|ERVL	-387539	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
2.29148-26	chrX	21505883	21506382	+	0	NA	intron (NM_001330772, intron 5 of 19)	intron (NM_001330772, intron 5 of 19)	113716	NM_001330772	22866	Hs.555917	NM_014927	ENSG00000149970	CNKSR2	CNK2|KSR2|MAGUIN	connector enhancer of kinase suppressor of Ras 2	protein-coding
4.47332-7	chr2	76672170	76672669	+	0	NA	Intergenic	7SK|RNA|RNA	-540672	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
2.66001-17	chr11	17861723	17862222	+	0	NA	intron (NM_012139, intron 10 of 10)	intron (NM_012139, intron 10 of 10)	104477	NM_001112741	3746	Hs.552896	NM_004976	ENSG00000129159	KCNC1	EPM7|KV3.1|KV4|NGK2	potassium voltage-gated channel subfamily C member 1	protein-coding
6.67562	chr12	28295224	28295723	+	0	NA	Intergenic	Intergenic	-47887	NM_001330367	55297	Hs.653125	NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding
0.00434512-15	chr9	133320006	133320505	+	0	NA	5' UTR (NM_054012, exon 1 of 15)	5' UTR (NM_054012, exon 1 of 15)	161	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
3.37242-5	chr1	32253598	32254097	+	0	NA	Intergenic	Intergenic	-24183	NM_001294335	576	Hs.524138	NM_001703	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
1.91114-12	chr11	30554896	30555395	+	0	NA	intron (NM_001145399, intron 3 of 6)	intron (NM_001145399, intron 3 of 6)	46895	NM_001584	744	Hs.289795	NM_001584	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
10.1412-2	chr7	117681347	117681846	+	0	NA	Intergenic	Intergenic	-142490	NM_016200	51691	Hs.655046	NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
5.12862-4	chr5	6515856	6516355	+	0	NA	Intergenic	L1PA10|LINE|L1	-66144	NR_024423	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
0.141246-28	chr16	5147444	5147943	+	0	NA	exon (NM_001289029, exon 1 of 6)	exon (NM_001289029, exon 1 of 6)	128	NM_201598	196483	Hs.406461	NM_201400	ENSG00000118894	EEF2KMT	FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
2.63603-3	chr2	99797605	99798104	+	0	NA	promoter-TSS (NM_001320417)	promoter-TSS (NM_001320417)	312	NM_145212	51263	Hs.346736	NM_016503	ENSG00000185414	MRPL30	L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28	mitochondrial ribosomal protein L30	protein-coding
12.7003-3	chr11	45943544	45944043	+	0	NA	promoter-TSS (NM_001300721)	promoter-TSS (NM_001300721)	-434	NM_001300721	120071	Hs.86543	NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
0.268721-50	chr11	47574052	47574551	+	0	NA	intron (NM_006560, intron 1 of 13)	CpG	491	NM_006560	10658	Hs.595333	NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP, Elav-like family member 1	protein-coding
2.61219-10	chr17	65713630	65714129	+	0	NA	promoter-TSS (NM_001303272)	promoter-TSS (NM_001303272)	-70	NM_015462	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
5.95166-13	chr7	147182804	147183303	+	0	NA	exon (NM_014141, exon 11 of 24)	exon (NM_014141, exon 11 of 24)	-107840	NR_031645	100313895		NR_031645	ENSG00000221442	MIR548F4	MIR548F-4|MIRN548F4|hsa-mir-548f-4	microRNA 548f-4	ncRNA
5.71865-5	chr13	113808583	113809082	+	0	NA	Intergenic	Intergenic	-4136	NM_003891	8858	Hs.1011	NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
16.8613-6	chr7	74031420	74031919	+	0	NA	Intergenic	Intergenic	-40322	NM_001163636	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
2.48721-4	chr1	171662245	171662744	+	0	NA	Intergenic	SVA_C|Other|Other	-40721	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR	myocilin	protein-coding
1.81115-10	chr1	151566568	151567067	+	0	NA	Intergenic	Intergenic	-17845	NM_001330723	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
1.60522-15	chr5	43017897	43018396	+	0	NA	non-coding (NR_034086, exon 1 of 2)	non-coding (NR_034086, exon 1 of 2)	767	NR_104649	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	ncRNA
3.18759-9	chr9	14693154	14693653	+	0	NA	promoter-TSS (NM_178566)	promoter-TSS (NM_178566)	77	NM_178566	340481	Hs.649522	NM_178566	ENSG00000175893	ZDHHC21	9130404H11Rik|DHHC-21|DHHC21|DNZ1|HSPC097	zinc finger DHHC-type containing 21	protein-coding
9.74694-10	chr21	34789808	34790307	+	0	NA	intron (NM_001329128, intron 3 of 7)	intron (NM_001329128, intron 3 of 7)	14855	NM_001329128	3460	Hs.634632	NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
0.357404-12	chr6	4093436	4093935	+	0	NA	intron (NR_104463, intron 2 of 7)	Tigger2b_Pri|DNA|TcMar-Tigger	-14228	NM_173563	222826	Hs.657342	NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
10.2549	chr18	73608704	73609203	+	0	NA	Intergenic	Intergenic	-184595	NR_134646	100505853	Hs.146758	NR_134646	ENSG00000261194	LINC01898	-	long intergenic non-protein coding RNA 1898	ncRNA
0.814455	chr2	218818340	218818839	+	0	NA	Intergenic	Intergenic	-9793	NM_022648	7145	Hs.471381	NM_022648	ENSG00000079308	TNS1	MST091|MST122|MST127|MSTP091|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
1.34304-9	chr2	136502268	136502767	+	0	NA	intron (NM_014607, intron 1 of 12)	intron (NM_014607, intron 1 of 12)	3328	NM_014607	23190	Hs.591242	NM_014607	ENSG00000144224	UBXN4	UBXD2|UBXDC1|erasin	UBX domain protein 4	protein-coding
2.24026-5	chr19	51307973	51308472	+	0	NA	promoter-TSS (NM_032712)	promoter-TSS (NM_032712)	-112	NM_001290154	84798	Hs.256301	NM_032712	ENSG00000167747	C19orf48	-	chromosome 19 open reading frame 48	protein-coding
0.213631-4	chr12	125347402	125347901	+	0	NA	intron (NM_001082959, intron 1 of 11)	intron (NM_001082959, intron 1 of 11)	868	NM_005505	949	Hs.731377	NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
13.0627-3	chr8	75232560	75233315	+	0	NA	intron (NM_020647, intron 1 of 5)	CpG	659	NM_001317830	56704	Hs.657367	NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding
0.296531-135	chr19	4190957	4191456	+	0	NA	intron (NM_133475, intron 2 of 21)	intron (NM_133475, intron 2 of 21)	7855	NM_133475	170961	Hs.197872	NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
38.1531	chr4	26841121	26841620	+	0	NA	Intergenic	L2|LINE|L2	20496	NR_134675	105374546	Hs.548859	NR_134673		LOC105374546	-	uncharacterized LOC105374546	ncRNA
0.888424-50	chr10	17243211	17243710	+	0	NA	intron (NM_001321007, intron 1 of 11)	CpG	610	NM_001321007	1787	Hs.351665	NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
0.614803-3	chr1	16562580	16563079	+	0	NA	intron (NM_030907, intron 1 of 4)	MIRb|SINE|MIR	830	NM_030907	79363	Hs.546430	NM_030907	ENSG00000132881	RSG1	C1orf89	REM2 and RAB like small GTPase 1	protein-coding
0.0921731-37	chr7	2148676	2149175	+	0	NA	intron (NM_001013836, intron 11 of 18)	intron (NM_001013836, intron 11 of 18)	123658	NM_001013836	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
0.400052-5	chr3	33840212	33840711	+	0	NA	intron (NM_001162429, intron 1 of 17)	CpG	398	NM_001256192	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
0.0261362-33	chr1	45476101	45476600	+	0	NA	exon (NM_024602, exon 2 of 21)	exon (NM_024602, exon 2 of 21)	677	NM_024602	79654	Hs.525084	NM_024602	ENSG00000126107	HECTD3	-	HECT domain E3 ubiquitin protein ligase 3	protein-coding
1.64309-8	chr2	170550713	170551212	+	0	NA	promoter-TSS (NR_144936)	promoter-TSS (NR_144936)	-2	NM_001199286	493911	Hs.745233	NM_001008489	ENSG00000144362	PHOSPHO2	-	phosphatase, orphan 2	protein-coding
9.46922-9	chr8	27901943	27902442	+	0	NA	intron (NM_001010906, intron 12 of 18)	MER89|LTR|ERV1	39196	NM_001010906	389643	Hs.370129	NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC	nuclear GTPase, germinal center associated	protein-coding
1.66216-8	chr5	83677299	83677798	+	0	NA	intron (NM_001278642, intron 1 of 9)	intron (NM_001278642, intron 1 of 9)	3137	NM_001278642	10085	Hs.482730	NM_005711	ENSG00000164176	EDIL3	DEL1	EGF like repeats and discoidin domains 3	protein-coding
0.438316-23	chr7	107301832	107302331	+	0	NA	non-coding (NR_028137, exon 1 of 2)	non-coding (NR_028137, exon 1 of 2)	162	NR_028137	286002	Hs.512611	NR_028137		SLC26A4-AS1	-	SLC26A4 antisense RNA 1	ncRNA
0.25028-4	chr7	73482056	73482555	+	0	NA	intron (NM_001278939, intron 33 of 33)	intron (NM_001278939, intron 33 of 33)	-15802	NM_002314	3984	Hs.647035	NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
2.0204-16	chr3	153819992	153820491	+	0	NA	intron (NR_037901, intron 2 of 3)	intron (NR_037901, intron 2 of 3)	-18551	NM_001251962	26084	Hs.240845	NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
11.9044-6	chr15	21928006	21928505	+	0	NA	Intergenic	LTR9|LTR|ERV1	12484	NR_027053	646214	Hs.510697	NR_027053		LOC646214	-	p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene	pseudo
11.5927-7	chr3	127255251	127255750	+	0	NA	intron (NR_125397, intron 1 of 6)	intron (NR_125397, intron 1 of 6)	1123	NR_125397	101927149	Hs.407798	NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
0.872467-9	chr15	70488069	70488568	+	0	NA	Intergenic	Intergenic	-98062	NM_001282980	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
2.64401-8	chr5	128430445	128430944	+	0	NA	exon (NM_016048, exon 1 of 5)	exon (NM_016048, exon 1 of 5)	252	NM_016048	51015	Hs.483296	NM_016048	ENSG00000066583	ISOC1	CGI-111	isochorismatase domain containing 1	protein-coding
2.11832-11	chr1	21916936	21917435	+	0	NA	Intergenic	Intergenic	61163	NM_001145658	5909	Hs.148178	NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
2.35077-13	chr22	19793954	19794453	+	0	NA	exon (NM_053004, exon 6 of 8)	exon (NM_053004, exon 6 of 8)	48168	NM_024627	79680	Hs.105642	NM_024627	ENSG00000215012	C22orf29	BOP	chromosome 22 open reading frame 29	protein-coding
6.17983-13	chr2	2849027	2849526	+	0	NA	Intergenic	Intergenic	280522	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
0.952845-23	chrX	68723234	68723733	+	0	NA	Intergenic	Intergenic	-1595	NM_015686	27112	Hs.87619	NM_015686	ENSG00000130054	FAM155B	CXorf63|TED|TMEM28|bB57D9.1	family with sequence similarity 155 member B	protein-coding
0.254883-44	chr16	21161967	21162466	+	0	NA	promoter-TSS (NM_001347886)	promoter-TSS (NM_001347886)	-88	NM_001347886	55567	Hs.526500	NM_017539	ENSG00000158486	DNAH3	DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3	dynein axonemal heavy chain 3	protein-coding
8.63279-9	chr7	5535146	5535645	+	0	NA	TTS (NR_030318)	TTS (NR_030318)	153	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
14.4855-2	chr2	208795752	208796251	+	0	NA	intron (NM_001080475, intron 4 of 7)	intron (NM_001080475, intron 4 of 7)	94283	NM_001080475	389072	Hs.159188	NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
0.227338-10	chr7	101652082	101652581	+	0	NA	intron (NM_001202544, intron 2 of 21)	intron (NM_001202544, intron 2 of 21)	191449	NM_181552	1523	Hs.191482	NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
5.80044	chr11	3829592	3830091	+	0	NA	promoter-TSS (NM_001256239)	promoter-TSS (NM_001256239)	75	NM_001256240	27315	Hs.133968	NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
0.0833099-6	chr16	2009234	2009733	+	0	NA	promoter-TSS (NM_004548)	promoter-TSS (NM_004548)	-34	NM_004548	4716	Hs.513266	NM_004548	ENSG00000140990	NDUFB10	PDSW	NADH:ubiquinone oxidoreductase subunit B10	protein-coding
6.88246-10	chr20	42310540	42311039	+	0	NA	intron (NM_002466, intron 3 of 13)	intron (NM_002466, intron 3 of 13)	15130	NM_002466	4605	Hs.179718	NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
4.44906-14	chr3	159250296	159250795	+	0	NA	intron (NM_001197108, intron 1 of 6)	AmnSINE1|SINE|Deu	235856	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
0.0130484-20	chrX	23858703	23859625	+	0	NA	intron (NR_026545, intron 6 of 7)	intron (NR_026545, intron 6 of 7)	57889	NM_002970	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
0.675262-11	chr4	187065256	187065755	+	0	NA	promoter-TSS (NM_015398)	promoter-TSS (NM_015398)	-490	NM_015398	25854	Hs.744961	NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
1.17475-10	chr12	120638822	120639321	+	0	NA	promoter-TSS (NM_053275)	promoter-TSS (NM_053275)	-23	NR_038924	100506649	Hs.569205	NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
0.757207-7	chr14	82780109	82780608	+	0	NA	Intergenic	Intergenic	-690953	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
3.25139	chr7	69089321	69089820	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	25665	NM_015570	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
0.589858-7	chr2	151226937	151227436	+	0	NA	Intergenic	Intergenic	117023	NM_001254738	390	Hs.6838	NM_005168	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
6.16185-12	chr7	5673920	5674419	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	41733	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
11.4509-3	chr5	51335355	51335854	+	0	NA	Intergenic	Intergenic	-656438	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
7.37549	chr10	81586033	81586532	+	0	NA	promoter-TSS (NR_120613)	promoter-TSS (NR_120613)	68	NR_120611	101060691	Hs.440648	NR_120611	ENSG00000225484	NUTM2B-AS1	-	NUTM2B antisense RNA 1	ncRNA
1.06793	chr16	11295469	11295968	+	0	NA	Intergenic	Intergenic	54321	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
17.9588-5	chr13	95146237	95146736	+	0	NA	intron (NM_001322183, intron 1 of 7)	intron (NM_001322183, intron 1 of 7)	-14550	NM_001922	1638	Hs.301865	NM_001922	ENSG00000080166	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
0.93665-19	chr12	125478543	125479042	+	0	NA	intron (NM_080626, intron 1 of 2)	CpG	598	NM_080626	140707	Hs.596464	NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
0.00869459-6	chr16	77269877	77270376	+	0	NA	Intergenic	Intergenic	36777	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
4.19075-18	chr1	156774141	156774640	+	0	NA	Intergenic	Intergenic	-11152	NM_001007792	4914	Hs.406293	NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
22.815-6	chr9	18122071	18122570	+	0	NA	Intergenic	Intergenic	-351759	NM_001040272	92949	Hs.741483	NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
6.73664-11	chr13	22262159	22262658	+	0	NA	intron (NM_002010, intron 2 of 2)	intron (NM_002010, intron 2 of 2)	17193	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
3.5164-13	chr6	6772932	6773431	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-150122	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
11.6558	chr13	58203606	58204105	+	0	NA	Intergenic	CpG	-1934	NM_001040429	27253	Hs.106511	NM_014459	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
0.395292-11	chr4	166319407	166319906	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	12262	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
2.82329-10	chr2	157150352	157150851	+	0	NA	Intergenic	SVA_F|Other|Other	38686	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
0.376307-15	chr11	115034586	115035085	+	0	NA	Intergenic	Intergenic	-169461	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
1.70696-8	chr9	34637138	34637637	+	0	NA	exon (NM_001282205, exon 2 of 4)	exon (NM_001282205, exon 2 of 4)	436	NM_005866	10280	Hs.522087	NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
0.963675-5	chr2	46727193	46727692	+	0	NA	Intergenic	Intergenic	20738	NM_001145051	388946	Hs.733348	NM_001145051	ENSG00000187600	TMEM247	-	transmembrane protein 247	protein-coding
17.9048-2	chr17	27439818	27440317	+	0	NA	intron (NM_001346768, intron 15 of 40)	intron (NM_001346768, intron 15 of 40)	27330	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
0.00434512	chr5	14264611	14265110	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	121049	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
7.61954-25	chr2	42997593	42998092	+	0	NA	intron (NM_012205, intron 4 of 9)	intron (NM_012205, intron 4 of 9)	-6441	NM_148962	165140	Hs.168439	NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
0.510982-28	chr1	91631541	91632040	+	0	NA	Intergenic	Intergenic	-143978	NM_032186	84146	Hs.173001	NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
0.0130484-54	chr3	33700734	33701233	+	0	NA	promoter-TSS (NM_001207044)	promoter-TSS (NM_001207044)	-50	NM_001207044	23122	Hs.108614	NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
0.199966	chr5	1246837	1247336	+	0	NA	TTS (NM_182632)	TTS (NM_182632)	21616	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
1.34304-4	chr9	139929558	139930057	+	0	NA	3' UTR (NM_207511, exon 3 of 3)	3' UTR (NM_207511, exon 3 of 3)	-2515	NM_004479	2529	Hs.457	NM_004479	ENSG00000180549	FUT7	FucT-VII	fucosyltransferase 7	protein-coding
10.6651	chr16	9056230	9056729	+	0	NA	intron (NM_003470, intron 1 of 30)	CpG	862	NM_003470	7874	Hs.386939	NM_003470	ENSG00000187555	USP7	HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
3.7366-4	chr6	20707163	20707662	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	172724	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
5.96879-3	chr5	31640204	31640703	+	0	NA	intron (NM_178140, intron 1 of 24)	intron (NM_178140, intron 1 of 24)	936	NM_178140	23037	Hs.481819	NM_015022	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
0.883098-3	chr21	34602323	34602822	+	0	NA	intron (NM_207585, intron 1 of 8)	CpG	372	NM_207584	3455	Hs.708195	NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
7.74691-10	chr2	55460064	55460563	+	0	NA	promoter-TSS (NR_039624)	promoter-TSS (NR_039624)	499	NM_001177413	6233	Hs.311640	NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80	ribosomal protein S27a	protein-coding
1.16339-12	chr12	132195105	132195604	+	0	NA	promoter-TSS (NM_001261411)	promoter-TSS (NM_001261411)	-278	NM_004592	6433	Hs.308171	NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP homolog	protein-coding
0.277972-2	chr1	85086451	85086950	+	0	NA	promoter-TSS (NR_125761)	promoter-TSS (NR_125761)	14	NR_125761	103695366	Hs.576097	NR_125761		LINC01461	TCONS_00001552	long intergenic non-protein coding RNA 1461	ncRNA
1.06793-3	chr3	101546541	101547040	+	0	NA	promoter-TSS (NM_001005474)	promoter-TSS (NM_001005474)	-44	NM_001005474	64332	Hs.319171	NM_031419	ENSG00000144802	NFKBIZ	IKBZ|INAP|MAIL	NFKB inhibitor zeta	protein-coding
0.190881-3	chr2	42476929	42477428	+	0	NA	intron (NM_001145076, intron 2 of 21)	intron (NM_001145076, intron 2 of 21)	-79807	NR_110584	102723824	Hs.639826	NR_110584		LOC102723824	-	uncharacterized LOC102723824	ncRNA
1.22629-33	chr2	11738177	11738676	+	0	NA	intron (NM_014668, intron 14 of 32)	intron (NM_014668, intron 14 of 32)	55575	NM_033090	9687	Hs.467733	NM_014668	ENSG00000196208	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
0.296531-88	chr12	53454627	53455126	+	0	NA	exon (NM_198316, exon 20 of 29)	exon (NM_198316, exon 20 of 29)	4148	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
28.6967-3	chr14	76434787	76435286	+	0	NA	intron (NM_001329939, intron 4 of 7)	intron (NM_001329939, intron 4 of 7)	13329	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
0.34328-4	chr13	93116007	93116506	+	0	NA	intron (NM_004466, intron 7 of 7)	MIRb|SINE|MIR	-26160	NR_049840	100847092		NR_049840	ENSG00000263741	MIR548AS	-	microRNA 548as	ncRNA
0.00434512-5	chr19	20262783	20263282	+	0	NA	Intergenic	SVA_D|Other|Other	-14991	NM_052852	90649	Hs.590991	NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
1.80456-11	chr21	37441949	37442448	+	0	NA	promoter-TSS (NM_001757)	promoter-TSS (NM_001757)	-24	NM_001286789	873	Hs.88778	NM_001757	ENSG00000159228	CBR1	CBR|SDR21C1|hCBR1	carbonyl reductase 1	protein-coding
3.99027-8	chr15	70391882	70392381	+	0	NA	Intergenic	CpG-8039	-1875	NM_001282980	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
2.89883-9	chr11	79666992	79667491	+	0	NA	Intergenic	Intergenic	-515546	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4	teneurin transmembrane protein 4	protein-coding
2.54925-14	chr9	133884252	133884751	+	0	NA	promoter-TSS (NM_006059)	promoter-TSS (NM_006059)	-3	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	laminin subunit gamma 3	protein-coding
4.25969-8	chr2	224904005	224904504	+	0	NA	promoter-TSS (NM_001136530)	promoter-TSS (NM_001136530)	-218	NM_006216	5270	Hs.38449	NM_006216	ENSG00000135919	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin family E member 2	protein-coding
2.51812-8	chr8	23386742	23387241	+	0	NA	intron (NM_001317812, intron 1 of 3)	CpG	683	NM_016612	51312	Hs.596025	NM_016612	ENSG00000147454	SLC25A37	HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	solute carrier family 25 member 37	protein-coding
3.43902-5	chr5	2104011	2104510	+	0	NA	Intergenic	L2b|LINE|L2	208055	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
0.649968-18	chr8	67392229	67392728	+	0	NA	Intergenic	Intergenic	-13013	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
13.2514-2	chr22	41090427	41090926	+	0	NA	Intergenic	MIR|SINE|MIR	15494	NM_005297	2847	Hs.248122	NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
8.47712-4	chr14	51933667	51934166	+	0	NA	intron (NR_051990, intron 2 of 2)	SVA_B|Other|Other	-21923	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
5.25784-5	chr6	160400215	160400714	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	10333	NM_000876	3482	Hs.487062	NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
19.8716-2	chr16	85749193	85749692	+	0	NA	intron (NM_206967, intron 2 of 3)	intron (NM_206967, intron 2 of 3)	25864	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
4.4855-17	chr15	43803624	43804123	+	0	NA	Intergenic	Intergenic	-1166	NM_005657	7158	Hs.440968	NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|TP53|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
0.127808-10	chr5	153466747	153467246	+	0	NA	Intergenic	Intergenic	48477	NM_001135037	4238	Hs.432818	NM_005927	ENSG00000037749	MFAP3	-	microfibrillar associated protein 3	protein-coding
9.39302-10	chr4	145924058	145924557	+	0	NA	intron (NM_001256710, intron 4 of 5)	L1PA15|LINE|L1	94227	NM_001318367	10393	Hs.480876	NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
15.867-4	chr11	35840382	35840881	+	0	NA	Intergenic	Intergenic	-124900	NM_174902	143458	Hs.745134	NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
0.123337	chr9	100934888	100935387	+	0	NA	promoter-TSS (NM_003389)	promoter-TSS (NM_003389)	37	NM_003389	7464	Hs.113094	NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
8.79426-21	chr1	179050880	179051379	+	0	NA	promoter-TSS (NM_022371)	promoter-TSS (NM_022371)	17	NM_022371	64222	Hs.584957	NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
2.58061-16	chr21	45316794	45317293	+	0	NA	intron (NM_020132, intron 1 of 9)	SVA_A|Other|Other	-28236	NM_001037553	56894	Hs.248785	NM_020132	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
0.101054-27	chr8	37336686	37337185	+	0	NA	intron (NR_121620, intron 1 of 6)	intron (NR_121620, intron 1 of 6)	14496	NR_121620	100507420	Hs.105962	NR_121620		LINC01605	-	long intergenic non-protein coding RNA 1605	ncRNA
1.91114-13	chr14	87486449	87486948	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	114576	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
5.40608-7	chr15	99280233	99280732	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-47173	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
5.0307-5	chr14	105344782	105345281	+	0	NA	intron (NM_015005, intron 4 of 17)	intron (NM_015005, intron 4 of 17)	13381	NM_015005	283638	Hs.533721	NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
10.1278-3	chr3	39697635	39698134	+	0	NA	Intergenic	SVA_B|Other|Other	-152521	NM_001284423	25924	Hs.594535	NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
1.79799-26	chr22	46307770	46308269	+	0	NA	Intergenic	Intergenic	64989	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
13.83-2	chr6	109670663	109671162	+	0	NA	Intergenic	Intergenic	32030	NM_001346500	8763	Hs.520313	NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
0.0788851-9	chr12	23612169	23612668	+	0	NA	Intergenic	L2b|LINE|L2	125128	NM_178010	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding
22.3958	chrX	39313129	39313628	+	0	NA	Intergenic	Intergenic	-62350	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
3.66532-5	chrX	153606383	153606882	+	0	NA	promoter-TSS (NM_000117)	promoter-TSS (NM_000117)	-965	NM_000117	2010	Hs.522823	NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
0.231917-37	chr17	44344581	44345080	+	0	NA	Intergenic	Intergenic	-27667	NM_014834	9884	Hs.579108	NM_014834	ENSG00000176681	LRRC37A	LRRC37	leucine rich repeat containing 37A	protein-coding
35.376-2	chr6	131972874	131973373	+	0	NA	intron (NM_005021, intron 3 of 24)	intron (NM_005021, intron 3 of 24)	14748	NM_005021	5169	Hs.486489	NM_005021	ENSG00000154269	ENPP3	B10|CD203c|NPP3|PD-IBETA|PDNP3	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding
2.83997-6	chr2	232572467	232572966	+	0	NA	promoter-TSS (NM_001099285)	promoter-TSS (NM_001099285)	-519	NM_001099285	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding
6.38272-5	chr20	31169814	31170313	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	2812	NM_001256798	140688	Hs.516978	NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4 like	protein-coding
13.8195	chr12	131174193	131174692	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	149377	NM_194356	2054	Hs.437585	NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
1.37272-23	chr4	42656878	42657377	+	0	NA	intron (NM_006095, intron 1 of 36)	L2b|LINE|L2	1995	NM_006095	10396	Hs.435052	NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
10.0436-2	chr5	168527511	168528010	+	0	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	87528	NR_109897	728095	Hs.145601	NR_109897		LOC728095	-	uncharacterized LOC728095	ncRNA
0.400052-45	chr1	59247919	59248418	+	0	NA	exon (NM_002228, exon 1 of 1)	exon (NM_002228, exon 1 of 1)	1617	NM_002228	3725	Hs.696684	NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
0.301184-20	chr6	2911849	2912348	+	0	NA	Intergenic	Intergenic	-8552	NM_004155	5272	Hs.104879	NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
0.589858-32	chr11	30218082	30218581	+	0	NA	Intergenic	Intergenic	-34232	NM_001018080	2488	Hs.36975	NM_000510	ENSG00000131808	FSHB	HH24	follicle stimulating hormone beta subunit	protein-coding
6.9897-17	chr22	18291451	18291950	+	0	NA	exon (NM_015241, exon 29 of 32)	exon (NM_015241, exon 29 of 32)	31644	NR_103718	200298	Hs.517397	NR_103718	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
16.038	chr14	46110783	46111282	+	0	NA	Intergenic	Intergenic	-388427	NM_018353	55320	Hs.732769	NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
18.0134-2	chr16	75313160	75313659	+	0	NA	Intergenic	Intergenic	-11458	NM_001170715	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
15.544-7	chr13	112718509	112719008	+	0	NA	intron (NR_120392, intron 1 of 3)	intron (NR_120392, intron 1 of 3)	-3155	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY-box 1	protein-coding
13.439	chr13	99630471	99630970	+	0	NA	promoter-TSS (NM_001130048)	promoter-TSS (NM_001130048)	-382	NM_001130048	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
0.599818-20	chr8	72917305	72917804	+	0	NA	intron (NR_033652, intron 4 of 4)	CpG	70265	NM_007332	8989	Hs.716816	NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS	transient receptor potential cation channel subfamily A member 1	protein-coding
0.589858-13	chr18	8771806	8772305	+	0	NA	intron (NM_015210, intron 4 of 16)	intron (NM_015210, intron 4 of 16)	54686	NM_015210	23255	Hs.707920	NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
6.14394-8	chr11	118861687	118862186	+	0	NA	Intergenic	SVA_B|Other|Other	-6907	NR_104050	338657	Hs.534613	NM_198489	ENSG00000186166	CCDC84	DLNB14	coiled-coil domain containing 84	protein-coding
2.62807-7	chr17	1065720	1066219	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	17299	NM_021962	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
0.570004-8	chr20	60717690	60718189	+	0	NA	promoter-TSS (NM_001301778)	promoter-TSS (NM_001301778)	575	NM_002792	5688	Hs.233952	NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome subunit alpha 7	protein-coding
23.7779	chr1	144987716	144988215	+	0	NA	intron (NM_001002810, intron 1 of 3)	intron (NM_001002810, intron 1 of 3)	7068	NM_014644	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
0.419142-28	chr3	176585978	176586477	+	0	NA	Intergenic	L1M1|LINE|L1	-51438	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
4.80172-7	chr15	78832483	78832982	+	0	NA	promoter-TSS (NM_002789)	promoter-TSS (NM_002789)	-15	NM_002789	5685	Hs.251531	NM_002789	ENSG00000041357	PSMA4	HC9|HsT17706|PSC9	proteasome subunit alpha 4	protein-coding
1.37869-25	chr1	159915235	159915734	+	0	NA	promoter-TSS (NM_020789)	promoter-TSS (NM_020789)	-98	NM_001135050	57549	Hs.591472	NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
2.58061-6	chr9	33043332	33043831	+	0	NA	3' UTR (NM_018225, exon 12 of 12)	3' UTR (NM_018225, exon 12 of 12)	18380	NM_001539	3301	Hs.445203	NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
4.31798-8	chr6	92185667	92186166	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-45462	NR_039786	100616174		NR_039786	ENSG00000263734	MIR4643	-	microRNA 4643	ncRNA
17.6955-4	chr3	153854758	153855257	+	0	NA	intron (NM_015595, intron 4 of 14)	MSTC|LTR|ERVL-MaLR	15858	NM_001251963	26084	Hs.240845	NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
1.36083-4	chr11	77850815	77851314	+	0	NA	promoter-TSS (NM_001007027)	promoter-TSS (NM_001007027)	225	NR_102281	100289388	Hs.628183	NM_203432	ENSG00000246174	KCTD21-AS1	-	KCTD21 antisense RNA 1	ncRNA
2.63603-2	chr8	140614010	140614509	+	0	NA	intron (NR_104210, intron 3 of 3)	MLT1I|LTR|ERVL-MaLR	101040	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
1.06793-4	chr6	161303659	161304158	+	0	NA	Intergenic	Intergenic	-108851	NM_006724	4216	Hs.390428	NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
1.94499-10	chr15	80568260	80568759	+	0	NA	intron (NR_033833, intron 2 of 2)	intron (NR_033833, intron 2 of 2)	-23906	NR_120317	100996492	Hs.20034	NR_120317	ENSG00000259417	LINC01314	-	long intergenic non-protein coding RNA 1314	ncRNA
1.18045-14	chr20	3798963	3799462	+	0	NA	Intergenic	Intergenic	-1959	NM_001204447	55317	Hs.104806	NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 sigma 1 subunit	protein-coding
0.91515-25	chr4	72978068	72978567	+	0	NA	intron (NM_001144756, intron 2 of 4)	intron (NM_001144756, intron 2 of 4)	73468	NM_053036	10886	Hs.99231	NM_004885	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
15.3313-2	chr10	28606613	28607112	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-14867	NR_134518	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	membrane palmitoylated protein 7	protein-coding
19.431-2	chr13	80603232	80603731	+	0	NA	Intergenic	Intergenic	18269	NR_104138	101515984	Hs.569290	NR_104138		LINC01080	TCONS_00021856	long intergenic non-protein coding RNA 1080	ncRNA
0.565055-7	chr8	110028584	110029083	+	0	NA	Intergenic	Intergenic	-70820	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding
0.48177-16	chr2	232466423	232466922	+	0	NA	Intergenic	AluJb|SINE|Alu	9097	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
3.83-3	chr3	191800740	191801239	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-155430	NR_046596	100873986	Hs.581652	NR_046596	ENSG00000231383	FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
1.37272-3	chr11	1851709	1852208	+	0	NA	Intergenic	Intergenic	-3582	NM_001290334	90019	Hs.161031	NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
1.02923	chr13	63278857	63279356	+	0	NA	intron (NR_047029, intron 5 of 7)	intron (NR_047029, intron 5 of 7)	91719	NR_047029	100874176	Hs.402083	NR_047029		LINC00448	-	long intergenic non-protein coding RNA 448	ncRNA
2.58848-9	chr3	127794511	127795010	+	0	NA	non-coding (NR_046645, exon 1 of 2)	non-coding (NR_046645, exon 1 of 2)	107	NR_046645	100874089	Hs.581603	NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
7.01147-19	chr1	218477885	218478384	+	0	NA	intron (NM_016052, intron 2 of 4)	intron (NM_016052, intron 2 of 4)	19505	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
3.28827-5	chr3	135131290	135131789	+	0	NA	Intergenic	L2a|LINE|L2	-552976	NM_002718	5523	Hs.518155	NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
1.34304-13	chr7	1068408	1068907	+	0	NA	promoter-TSS (NR_134537)	promoter-TSS (NR_134537)	-589	NR_134538	84310	Hs.653258	NM_032350	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
13.4104-4	chr5	6791190	6791689	+	0	NA	Intergenic	Intergenic	36595	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
0.254883-4	chr1	247170946	247171445	+	0	NA	intron (NR_037894, intron 1 of 6)	CpG	200	NM_020394	57116	Hs.669893	NM_020394	ENSG00000197472	ZNF695	SBZF3	zinc finger protein 695	protein-coding
0.338583-33	chr3	185426909	185427408	+	0	NA	intron (NR_138486, intron 2 of 15)	intron (NR_138486, intron 2 of 15)	-3882	NR_126326	646600	Hs.647949	NR_027317	ENSG00000163915	IGF2BP2-AS1	C3orf65	IGF2BP2 antisense RNA 1	ncRNA
2.5649-4	chr1	121110681	121111180	+	0	NA	intron (NM_001271870, intron 1 of 5)	intron (NM_001271870, intron 1 of 5)	3778	NR_120535	100996712	Hs.497575	NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
2.83997-8	chr17	12920796	12921295	+	0	NA	exon (NM_001165962, exon 1 of 23)	exon (NM_001165962, exon 1 of 23)	336	NM_018127	60528	Hs.434232	NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
3.00162-9	chr1	179509803	179510302	+	0	NA	intron (NR_073544, intron 25 of 25)	L1PA6|LINE|L1	35035	NM_014625	7827	Hs.412710	NM_014625	ENSG00000116218	NPHS2	PDCN|SRN1	NPHS2, podocin	protein-coding
0.851282-13	chr12	117318722	117319221	+	0	NA	exon (NM_003806, exon 1 of 2)	exon (NM_003806, exon 1 of 2)	261	NM_003806	8739	Hs.87247	NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
9.46922-10	chr5	72637932	72638431	+	0	NA	Intergenic	Intergenic	106171	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
0.385789-8	chr19	58400172	58400671	+	0	NA	promoter-TSS (NM_001144989)	promoter-TSS (NM_001144989)	21	NM_001144989	730051	Hs.634143	NM_001144989	ENSG00000204514	ZNF814	-	zinc finger protein 814	protein-coding
1.27261-13	chr6	31648553	31649052	+	0	NA	promoter-TSS (NM_025262)	promoter-TSS (NM_025262)	-652	NM_025262	80741	Hs.25738	NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding
6.28932-3	chr4	129377283	129377782	+	0	NA	intron (NR_125882, intron 1 of 8)	intron (NR_125882, intron 1 of 8)	28361	NR_125882	100507487	Hs.549644	NR_125882	ENSG00000251432	LOC100507487	-	uncharacterized LOC100507487	ncRNA
10.2	chr17	21273744	21274243	+	0	NA	Intergenic	Intergenic	-5706	NM_021012	3768	Hs.200629	NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium voltage-gated channel subfamily J member 12	protein-coding
1.15771-7	chr6	117922738	117923237	+	0	NA	intron (NM_001017408, intron 1 of 7)	intron (NM_001017408, intron 1 of 7)	718	NM_020399	57120	Hs.191539	NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
27.7728	chr1	109498421	109498920	+	0	NA	intron (NM_015127, intron 1 of 11)	MLT2B3|LTR|ERVL	-5600	NM_001278202	23155	Hs.658489	NM_015127	ENSG00000121940	CLCC1	MCLC	chloride channel CLIC like 1	protein-coding
5.96879-8	chr12	106711383	106711882	+	0	NA	intron (NM_152772, intron 3 of 9)	intron (NM_152772, intron 3 of 9)	15063	NM_001286262	255394	Hs.696047	NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
1.35489-18	chr17	25858150	25858649	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	59363	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
0.942041-5	chrX	151769644	151770143	+	0	NA	Intergenic	Intergenic	-36744	NM_018558	55879	Hs.283081	NM_018558	ENSG00000268089	GABRQ	THETA	gamma-aminobutyric acid type A receptor theta subunit	protein-coding
4.1005-5	chr8	121396232	121396731	+	0	NA	Intergenic	Intergenic	-61157	NM_022045	27085	Hs.657656	NM_022045	ENSG00000172167	MTBP	MDM2BP	MDM2 binding protein	protein-coding
13.3348	chr6	47408439	47408938	+	0	NA	Intergenic	Intergenic	-36837	NM_012120	23607	Hs.485518	NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
0.93665-14	chr1	5871423	5871922	+	0	NA	Intergenic	Intergenic	51129	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
15.4821-2	chr3	139405903	139406402	+	0	NA	Intergenic	Intergenic	-9260	NM_001320511	349565	Hs.208673	NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
16.3639-4	chr3	37756714	37757213	+	0	NA	intron (NM_002207, intron 18 of 27)	intron (NM_002207, intron 18 of 27)	146308	NR_110531	101928153	Hs.657314	NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
35.0169	chr14	99584336	99584835	+	0	NA	Intergenic	CpG	153465	NM_001282237	64919	Hs.709690	NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B	protein-coding
4.42493-2	chr14	105906355	105906854	+	0	NA	intron (NM_004689, intron 2 of 20)	intron (NM_004689, intron 2 of 20)	20418	NM_004689	9112	Hs.525629	NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
1.29011-5	chr17	58470321	58470820	+	0	NA	promoter-TSS (NM_032582)	promoter-TSS (NM_032582)	-984	NM_032582	84669	Hs.132868	NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
4.77556-4	chr16	15069699	15070198	+	0	NA	intron (NM_001324020, intron 1 of 16)	intron (NM_001324020, intron 1 of 16)	1128	NM_001285444	23042	Hs.370781	NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
24.2251	chr13	39680226	39680725	+	0	NA	Intergenic	LTR18B|LTR|ERVL	68027	NM_001017370	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
1.16339-5	chr7	81893268	81893767	+	0	NA	intron (NM_000722, intron 3 of 38)	intron (NM_000722, intron 3 of 38)	179605	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
1.49354	chr16	30969015	30969514	+	0	NA	5' UTR (NM_014712, exon 1 of 19)	5' UTR (NM_014712, exon 1 of 19)	649	NM_014712	9739	Hs.297483	NM_014712	ENSG00000099381	SETD1A	KMT2F|Set1|Set1A	SET domain containing 1A	protein-coding
2.01349	chr6	1611890	1612389	+	0	NA	exon (NM_001453, exon 1 of 1)	exon (NM_001453, exon 1 of 1)	1458	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
12.993	chr2	193843060	193843559	+	0	NA	Intergenic	Intergenic	228738	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
12.5964-2	chr5	2817152	2817651	+	0	NA	Intergenic	MIRb|SINE|MIR	65156	NM_001294337	153571	Hs.148486	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
11.9314-2	chr6	87187426	87187925	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-459349	NM_000865	3354	Hs.1611	NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
0.540393-10	chr3	117173021	117173520	+	0	NA	Intergenic	Intergenic	532992	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
0.47692-23	chr1	67090117	67090616	+	0	NA	intron (NM_032291, intron 1 of 24)	intron (NM_032291, intron 1 of 24)	-3757	NR_036060	100422871		NR_036060	ENSG00000264720	MIR3117	mir-3117	microRNA 3117	ncRNA
1.33122-20	chr4	37671217	37671716	+	0	NA	intron (NM_001085400, intron 1 of 6)	SVA_D|Other|Other	16533	NM_001085400	768211	Hs.283378	NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
9.62574-6	chr6	158573491	158573990	+	0	NA	intron (NR_073096, intron 3 of 12)	Tigger3c|DNA|TcMar-Tigger	15572	NM_032861	84947	Hs.154706	NM_032861	ENSG00000122335	SERAC1	-	serine active site containing 1	protein-coding
0.291884-26	chr6	134159078	134159577	+	0	NA	intron (NR_027030, intron 2 of 2)	CpG	17042	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
5.83359-17	chr5	531553	532052	+	0	NA	Intergenic	Intergenic	4195	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
0.315171-7	chr3	15104107	15104606	+	0	NA	intron (NM_022497, intron 1 of 3)	SVA_D|Other|Other	2488	NR_135247	64432	Hs.657764	NM_022497	ENSG00000131368	MRPS25	MRP-S25|RPMS25	mitochondrial ribosomal protein S25	protein-coding
2.18963-20	chr17	43128661	43129160	+	0	NA	promoter-TSS (NM_001288655)	promoter-TSS (NM_001288655)	-25	NM_001288655	79877	Hs.463148	NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
0.11441-4	chr18	7022165	7022664	+	0	NA	intron (NM_005559, intron 19 of 62)	intron (NM_005559, intron 19 of 62)	67738	NR_126040	101927188	Hs.680444	NR_126040	ENSG00000265069	LOC101927188	-	uncharacterized LOC101927188	ncRNA
1.27261-11	chr1	222060399	222060898	+	0	NA	Intergenic	Intergenic	-46640	NR_125989	101929771	Hs.557001	NR_125989	ENSG00000227925	LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
0.76756-32	chr20	30423824	30424323	+	0	NA	Intergenic	Intergenic	9347	NM_004118	2307	Hs.516971	NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
13.1336-6	chr3	5036487	5036986	+	0	NA	Intergenic	Intergenic	-15090	NR_125915	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
0.472076-23	chr20	1305722	1306221	+	0	NA	promoter-TSS (NR_040047)	promoter-TSS (NR_040047)	-16	NR_040048	100507495	Hs.655785	NR_040047	ENSG00000234684	SDCBP2-AS1	-	SDCBP2 antisense RNA 1	ncRNA
0.118872-13	chr13	105431711	105432210	+	0	NA	Intergenic	Intergenic	-686256	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
0.163737-19	chrX	75368679	75369178	+	0	NA	Intergenic	MER4A|LTR|ERV1	-23836	NM_001300888	51260	Hs.370100	NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
0.254883-41	chr5	36874577	36875076	+	0	NA	non-coding (NR_046262, exon 1 of 1)	non-coding (NR_046262, exon 1 of 1)	1970	NR_046262	646719	Hs.355684	NR_046262		NIPBL-AS1	NIPBL-AS	NIPBL antisense RNA 1 (head to head)	ncRNA
1.87087-8	chr19	48103427	48103926	+	0	NA	Intergenic	CpG	-7777	NM_015711	29998	Hs.97244	NM_015711	ENSG00000063169	GLTSCR1	-	glioma tumor suppressor candidate region gene 1	protein-coding
6.23423-3	chr17	36736162	36736661	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	25772	NM_025248	80725	Hs.448872	NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
0.0130484-21	chr7	29322439	29322938	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-74102	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
50.6651	chr1	216604654	216605153	+	0	NA	Intergenic	Intergenic	-8165	NM_206933	7399	Hs.655974	NM_007123	ENSG00000042781	USH2A	RP39|US2|USH2|dJ1111A8.1	usherin	protein-coding
2.26214-18	chr3	181444313	181444812	+	0	NA	intron (NR_004053, intron 4 of 4)	CpG	14850	NM_003106	6657	Hs.518438	NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box 2	protein-coding
0.0788851-19	chrX	13792762	13793261	+	0	NA	intron (NM_001001994, intron 6 of 6)	intron (NM_001001994, intron 6 of 6)	40179	NM_001330209	8481	Hs.6483	NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1, centriole and centriolar satellite protein	protein-coding
2.09715-7	chr10	121019884	121020383	+	0	NA	intron (NM_005308, intron 1 of 15)	SVA_D|Other|Other	52936	NM_005308	2869	Hs.524625	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding
0.990869-13	chr8	144678173	144678672	+	0	NA	intron (NM_001130055, intron 1 of 8)	intron (NM_001130055, intron 1 of 8)	1161	NM_001330646	1936	Hs.333388	NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
0.746879-3	chr6	71573264	71573763	+	0	NA	intron (NM_080742, intron 2 of 3)	intron (NM_080742, intron 2 of 3)	93275	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
2.11832-9	chrX	36279388	36279887	+	0	NA	intron (NM_001304548, intron 49 of 63)	SVA_C|Other|Other	178738	NR_110412	101928627	Hs.590831	NR_110412	ENSG00000226484	LOC101928627	-	uncharacterized LOC101928627	ncRNA
0.118872-28	chr2	142450299	142450798	+	0	NA	intron (NM_018557, intron 2 of 90)	MER45A|DNA|hAT-Tip100	438722	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
0.404816-2	chr2	74776433	74776932	+	0	NA	exon (NM_032603, exon 4 of 14)	exon (NM_032603, exon 4 of 14)	108	NM_001289165	84695	Hs.469045	NM_032603	ENSG00000115318	LOXL3	LOXL	lysyl oxidase like 3	protein-coding
0.259491-4	chr11	46400884	46401383	+	0	NA	intron (NM_001105540, intron 31 of 31)	intron (NM_001105540, intron 31 of 31)	-1201	NM_001270550	4192	Hs.82045	NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine (neurite growth-promoting factor 2)	protein-coding
1.71985-15	chr14	93581043	93581542	+	0	NA	intron (NM_001142593, intron 2 of 10)	CpG	972	NM_001142594	3705	Hs.308122	NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
1.88425-6	chr4	174107174	174107673	+	0	NA	intron (NM_017423, intron 1 of 11)	intron (NM_017423, intron 1 of 11)	-16620	NR_134242	101930370	Hs.563191	NR_134241	ENSG00000245213	LOC101930370	-	uncharacterized LOC101930370	ncRNA
0.467237-8	chr8	11424524	11425023	+	0	NA	Intergenic	Intergenic	-9271	NR_040035	83655	Hs.742430	NR_040035	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
2.0204-9	chr2	220378886	220379385	+	0	NA	exon (NM_182847, exon 1 of 9)	exon (NM_182847, exon 1 of 9)	243	NM_182847	55515	Hs.87469	NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
1.89096-7	chr5	151858765	151859264	+	0	NA	Intergenic	SVA_C|Other|Other	-74174	NM_020167	56923	Hs.731911	NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
1.85087-12	chr22	42475401	42475900	+	0	NA	promoter-TSS (NM_033318)	promoter-TSS (NM_033318)	-45	NM_033318	91689	Hs.306083	NM_033318	ENSG00000183172	SMDT1	C22orf32|DDDD|EMRE|dJ186O1.1	single-pass membrane protein with aspartate rich tail 1	protein-coding
0.721166-6	chr12	67462234	67462733	+	0	NA	Intergenic	Intergenic	27581	NR_120490	102724421	Hs.135774	NR_120490	ENSG00000257083	LOC102724421	-	uncharacterized LOC102724421	ncRNA
1.51195-9	chr18	12423803	12424302	+	0	NA	intron (NM_001142406, intron 2 of 5)	intron (NM_001142406, intron 2 of 5)	3864	NM_001142406	10650	Hs.514718	NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
1.76526-9	chr2	85978316	85978815	+	0	NA	Intergenic	Intergenic	-2344	NM_032827	84913	Hs.135569	NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
1.79142-8	chr3	9988783	9989282	+	0	NA	promoter-TSS (NR_046734)	promoter-TSS (NR_046734)	-56	NR_046734	100874032	Hs.616388	NR_046734	ENSG00000230082	PRRT3-AS1	-	PRRT3 antisense RNA 1	ncRNA
16.1798-13	chr2	174578538	174579037	+	0	NA	Intergenic	L2b|LINE|L2	250160	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
2.0412-8	chr14	104012912	104013411	+	0	NA	Intergenic	Intergenic	15494	NM_004873	9529	Hs.5443	NM_004873	ENSG00000166170	BAG5	BAG-5	BCL2 associated athanogene 5	protein-coding
0.371573-13	chr5	7336645	7337144	+	0	NA	Intergenic	Intergenic	11196	NR_134277	101929261	Hs.308202	NR_134277	ENSG00000250668	LINC02123	-	long intergenic non-protein coding RNA 2123	ncRNA
1.50581-5	chr11	66138470	66138969	+	0	NA	exon (NM_001532, exon 2 of 12)	exon (NM_001532, exon 2 of 12)	572	NR_125343	3177	Hs.569017	NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36	solute carrier family 29 member 2	protein-coding
0.186345-4	chr6	34514679	34515178	+	0	NA	intron (NM_012391, intron 1 of 5)	intron (NM_012391, intron 1 of 5)	9182	NM_001252294	25803	Hs.485158	NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
0.381045-4	chr14	60628084	60628583	+	0	NA	intron (NM_001322280, intron 1 of 6)	L3|LINE|CR1	3878	NM_001322281	51635	Hs.59719	NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
10.9151	chr16	88878160	88878659	+	0	NA	promoter-TSS (NM_000485)	promoter-TSS (NM_000485)	-67	NM_001030018	353	Hs.28914	NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
0.851282-14	chr3	138153140	138153639	+	0	NA	promoter-TSS (NM_001322834)	promoter-TSS (NM_001322834)	-26	NR_136409	83850	Hs.477711	NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
0.0833099-38	chr12	58233739	58234238	+	0	NA	intron (NM_005730, intron 1 of 7)	MER5A|DNA|hAT-Charlie	6759	NM_005730	10106	Hs.524530	NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
0.0217692	chr3	196758240	196758739	+	0	NA	Intergenic	Intergenic	-1802	NM_005929	4241	Hs.184727	NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
0.788339-19	chr2	135169456	135169955	+	0	NA	intron (NM_002410, intron 11 of 15)	intron (NM_002410, intron 11 of 15)	157875	NM_002410	4249	Hs.4988	NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
11.2436-4	chr5	7627338	7627837	+	0	NA	intron (NM_020546, intron 4 of 24)	intron (NM_020546, intron 4 of 24)	224016	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
1.05684-5	chr6	147106045	147106544	+	0	NA	intron (NM_024694, intron 31 of 35)	intron (NM_024694, intron 31 of 35)	18666	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
0.0833099-41	chr16	9242859	9243358	+	0	NA	Intergenic	Intergenic	57571	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
1.65579-5	chr6	32095869	32096368	+	0	NA	promoter-TSS (NM_004381)	promoter-TSS (NM_004381)	-101	NM_001136153	1388	Hs.42853	NM_004381	ENSG00000213676	ATF6B	CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
29.431	chr12	107812620	107813119	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	98504	NM_001347944	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding
2.11832-17	chr3	84886062	84886561	+	0	NA	intron (NR_033860, intron 8 of 20)	intron (NR_033860, intron 8 of 20)	32415	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
0.48177-23	chr1	66708241	66708740	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-89301	NM_001037339	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
1.7134-10	chr9	125152360	125152859	+	0	NA	exon (NM_080591, exon 10 of 11)	exon (NM_080591, exon 10 of 11)	15008	NM_001271165	5742	Hs.201978	NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
5.85027-18	chr5	1349350	1349849	+	0	NA	Intergenic	MER50|LTR|ERV1	-4414	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
2.79014-3	chr8	135346193	135346692	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-263872	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
3.53596-10	chr17	6285373	6285872	+	0	NA	Intergenic	Intergenic	52830	NM_001285402	23746	Hs.279887	NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
16.8825	chr17	65015057	65015556	+	0	NA	intron (NM_014405, intron 2 of 3)	intron (NM_014405, intron 2 of 3)	-25346	NM_000727	786	Hs.147989	NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
5.05845-16	chr6	15413754	15414253	+	0	NA	intron (NM_004973, intron 3 of 17)	AluJo|SINE|Alu	164917	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
5.67031-9	chr9	30490007	30490506	+	0	NA	Intergenic	L1PA16|LINE|L1	-81804	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
0.496351-24	chr15	102519599	102520098	+	0	NA	promoter-TSS (NR_034090)	promoter-TSS (NR_034090)	-552	NR_051985	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H-box helicase 11 like 9	pseudo
0.154727-9	chr15	29310489	29310988	+	0	NA	intron (NM_005503, intron 2 of 13)	intron (NM_005503, intron 2 of 13)	96898	NM_001130414	321	Hs.618112	NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
1.19186-28	chr3	52570845	52571344	+	0	NA	intron (NM_001124767, intron 1 of 1)	intron (NM_001124767, intron 1 of 1)	473	NM_001124767	440957	Hs.660577	NM_001124767	ENSG00000168273	SMIM4	C3orf78	small integral membrane protein 4	protein-coding
8.60121	chr18	63420735	63421234	+	0	NA	intron (NM_001317214, intron 1 of 10)	intron (NM_001317214, intron 1 of 10)	3096	NM_001317214	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
0.414361-32	chrX	103099906	103100405	+	0	NA	Intergenic	Intergenic	-12943	NM_016370	51209	Hs.522736	NM_016370	ENSG00000123570	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
3.0103-9	chr8	21091750	21092249	+	0	NA	Intergenic	Intergenic	-63751	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
1.39063-19	chr4	79469683	79470182	+	0	NA	Intergenic	SVA_D|Other|Other	-2810	NM_005139	306	Hs.480042	NM_005139	ENSG00000138772	ANXA3	ANX3	annexin A3	protein-coding
1.81115-25	chr8	108841891	108842390	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	252027	NM_001317942	340419	Hs.444834	NM_178565	ENSG00000147655	RSPO2	CRISTIN2	R-spondin 2	protein-coding
2.38072-12	chr11	859622	860121	+	0	NA	intron (NM_001025236, intron 3 of 8)	intron (NM_001025236, intron 3 of 8)	15425	NM_001025237	7106	Hs.654836	NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
20.9691-2	chr2	242356899	242357398	+	0	NA	intron (NM_014808, intron 7 of 26)	intron (NM_014808, intron 7 of 26)	-60172	NR_036083	100422942		NR_036083	ENSG00000263752	MIR3133	-	microRNA 3133	ncRNA
1.63043-8	chr3	186648826	186649325	+	0	NA	intron (NM_173217, intron 1 of 6)	CpG	760	NM_173217	6480	Hs.207459	NM_003032	ENSG00000073849	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
4.55932	chr15	92455504	92456003	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	58223	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
1.42668-8	chr9	114823451	114823950	+	0	NA	intron (NM_001282640, intron 13 of 17)	intron (NM_001282640, intron 13 of 17)	113877	NM_022486	64420	Hs.494827	NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
2.22573-13	chr1	156710736	156711235	+	0	NA	promoter-TSS (NM_145729)	promoter-TSS (NM_145729)	-62	NM_145729	79590	Hs.418233	NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24	mitochondrial ribosomal protein L24	protein-coding
0.404816-18	chr8	18422276	18422775	+	0	NA	intron (NM_015310, intron 14 of 15)	intron (NM_015310, intron 14 of 15)	173770	NM_000015	10	Hs.2	NM_000015	ENSG00000156006	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2	protein-coding
2.03426-10	chr2	28615438	28615937	+	0	NA	promoter-TSS (NM_005253)	promoter-TSS (NM_005253)	-92	NM_005253	2355	Hs.220971	NM_005253	ENSG00000075426	FOSL2	FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
0.123337-39	chr1	214679871	214680370	+	0	NA	intron (NM_005401, intron 1 of 18)	intron (NM_005401, intron 1 of 18)	44904	NM_005401	5784	Hs.193557	NM_005401	ENSG00000152104	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
0.329203-7	chr16	88938069	88938568	+	0	NA	Intergenic	Intergenic	-5250	NM_001080487	390748	Hs.730522	NM_001080487	ENSG00000205022	PABPN1L	PABPNL1|ePABP2	poly(A) binding protein nuclear 1 like, cytoplasmic	protein-coding
3.78824-5	chr5	141392380	141392879	+	0	NA	promoter-TSS (NM_005471)	promoter-TSS (NM_005471)	-9	NM_005471	10007	Hs.633853	NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
7.56962-10	chr4	141212369	141212868	+	0	NA	non-coding (NR_033939, exon 4 of 5)	non-coding (NR_033939, exon 4 of 5)	34178	NM_032547	60592	Hs.480815	NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
0.296531-139	chr1	2458132	2458631	+	0	NA	promoter-TSS (NM_018216)	promoter-TSS (NM_018216)	-314	NM_018216	55229	Hs.26156	NM_018216	ENSG00000157881	PANK4	-	pantothenate kinase 4	protein-coding
0.91515-2	chr6	36096109	36096608	+	0	NA	Intergenic	Intergenic	-1903	NR_072996	5603	Hs.178695	NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
0.0305075-59	chr2	198572198	198572697	+	0	NA	3' UTR (NM_138395, exon 1 of 1)	3' UTR (NM_138395, exon 1 of 1)	2419	NM_138395	92935	Hs.744330	NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
0.118872-48	chr1	102899978	102900477	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-437437	NR_110211	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
18.4466-4	chr11	78426671	78427170	+	0	NA	intron (NM_001098816, intron 25 of 33)	intron (NM_001098816, intron 25 of 33)	-141011	NM_001243251	79731	Hs.503389	NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
0.296531-75	chr2	198464220	198464719	+	0	NA	intron (NM_144629, intron 7 of 8)	intron (NM_144629, intron 7 of 8)	76115	NM_144629	130132	Hs.591615	NM_144629	ENSG00000162944	RFTN2	C2orf11|Raftlin-2	raftlin family member 2	protein-coding
6.34512	chr3	156468025	156468524	+	0	NA	intron (NR_038387, intron 2 of 2)	intron (NR_038387, intron 2 of 2)	61536	NR_003284	647033	Hs.745109	NR_003284		PA2G4P4	PA2G4L1	proliferation-associated 2G4 pseudogene 4	pseudo
1.0513-3	chr9	134630864	134631363	+	0	NA	Intergenic	Intergenic	-15782	NM_001304275	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
5.5752-4	chr1	100321952	100322451	+	0	NA	intron (NM_000646, intron 2 of 33)	SVA_C|Other|Other	5670	NM_000646	178	Hs.904	NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
2.36572-11	chr2	55506382	55506881	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2824	NR_027258	344405	Hs.445292	NM_001080459	ENSG00000162997	PRORSD1P	NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1	prolyl-tRNA synthetase associated domain containing 1, pseudogene	pseudo
3.68556-13	chr1	84326423	84326922	+	0	NA	promoter-TSS (NR_119375)	promoter-TSS (NR_119375)	7	NR_119375	101927587	Hs.621230	NR_119375	ENSG00000233008	LINC01725	-	long intergenic non-protein coding RNA 1725	ncRNA
0.268721-55	chr9	101569649	101570148	+	0	NA	promoter-TSS (NM_024642)	promoter-TSS (NM_024642)	-83	NM_024642	79695	Hs.47099	NM_024642	ENSG00000119514	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
1.11259-2	chr2	200328065	200328564	+	0	NA	intron (NM_015265, intron 1 of 11)	CpG-15850	1517	NM_001172517	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
3.56547-8	chr15	101313749	101314248	+	0	NA	Intergenic	SVA_D|Other|Other	-105899	NM_001293815	220	Hs.459538	NM_000693	ENSG00000184254	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family member A3	protein-coding
0.0966115-15	chr1	245081964	245082463	+	0	NA	Intergenic	Intergenic	-50958	NM_032328	84288	Hs.134857	NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
0.0877392-15	chr3	113666418	113666917	+	0	NA	promoter-TSS (NM_001320466)	promoter-TSS (NM_001320466)	-81	NM_173570	254887	Hs.21902	NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type containing 23	protein-coding
1.00727-15	chr4	146614155	146614654	+	0	NA	intron (NM_001080531, intron 1 of 5)	SVA_F|Other|Other	13048	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
2.13959-6	chr1	225614538	225615037	+	0	NA	intron (NM_194442, intron 1 of 13)	CpG	1028	NM_002296	3930	Hs.435166	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
0.105502-7	chr2	195565883	195566382	+	0	NA	Intergenic	AluSc8|SINE|Alu	-29187	NR_110223	101927431	Hs.558215	NR_110223	ENSG00000230173	LINC01790	-	long intergenic non-protein coding RNA 1790	ncRNA
21.8111-2	chr19	4449096	4449595	+	0	NA	intron (NM_001171091, intron 4 of 10)	intron (NM_001171091, intron 4 of 10)	3370	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
3.79864-8	chr2	10184104	10184603	+	0	NA	promoter-TSS (NM_001177718)	promoter-TSS (NM_001177718)	-19	NM_001177718	8462	Hs.12229	NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel like factor 11	protein-coding
2.82329-13	chr12	79258450	79258949	+	0	NA	5' UTR (NM_005639, exon 1 of 11)	5' UTR (NM_005639, exon 1 of 11)	250	NM_005639	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
5.65431-6	chr10	34780970	34781469	+	0	NA	intron (NM_001184785, intron 3 of 24)	intron (NM_001184785, intron 3 of 24)	323034	NM_001184789	56288	Hs.131489	NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
7.61954-18	chr3	97405287	97405786	+	0	NA	intron (NM_001080448, intron 14 of 17)	intron (NM_001080448, intron 14 of 17)	-77829	NR_136595	84100	Hs.373801	NM_032146	ENSG00000113966	ARL6	BBS3|RP55	ADP ribosylation factor like GTPase 6	protein-coding
26.8825	chr9	134917128	134917627	+	0	NA	intron (NM_004269, intron 2 of 7)	intron (NM_004269, intron 2 of 7)	37897	NM_004269	9442	Hs.374262	NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|TRAP37	mediator complex subunit 27	protein-coding
12.84	chr4	3310129	3310628	+	0	NA	Intergenic	Intergenic	-5496	NM_198229	6002	Hs.527061	NM_002926	ENSG00000159788	RGS12	-	regulator of G-protein signaling 12	protein-coding
17.3993-5	chr3	51656814	51657313	+	0	NA	intron (NM_001322257, intron 2 of 21)	intron (NM_001322257, intron 2 of 21)	-48128	NM_001278195	51368	Hs.517864	NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264	protein-coding
0.48177	chr19	18058269	18058768	+	0	NA	Intergenic	Intergenic	-3593	NM_002248	3780	Hs.158173	NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
8.38632-6	chr1	208682249	208682748	+	0	NA	Intergenic	MIRb|SINE|MIR	-264833	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
1.29011-9	chr3	144267906	144268405	+	0	NA	Intergenic	Intergenic	575988	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
2.91579-7	chr7	35075160	35075659	+	0	NA	intron (NM_015283, intron 1 of 21)	intron (NM_015283, intron 1 of 21)	2244	NM_015283	23333	Hs.408623	NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like 1	protein-coding
11.463	chr7	36748304	36748803	+	0	NA	intron (NM_001637, intron 1 of 20)	intron (NM_001637, intron 1 of 20)	15601	NM_001637	313	Hs.488007	NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
0.190881-16	chr11	100558362	100558861	+	0	NA	promoter-TSS (NR_133571)	promoter-TSS (NR_133571)	75	NR_133571	100128386	Hs.635125	NR_133571	ENSG00000248027	LOC100128386	-	uncharacterized LOC100128386	ncRNA
1.43271-3	chr13	79967888	79968387	+	0	NA	intron (NM_001286631, intron 1 of 21)	MER50-int|LTR|ERV1	12219	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
3.58526	chr14	77499649	77500148	+	0	NA	Intergenic	CpG	-4856	NM_024496	64207	Hs.179260	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein like	protein-coding
13.3255	chr7	99020217	99020716	+	0	NA	intron (NM_001198879, intron 8 of 8)	LTR9|LTR|ERV1	13865	NM_003910	8896	Hs.380233	NM_003910	ENSG00000106245	BUD31	Cwc14|EDG-2|EDG2|G10|YCR063W|fSAP17	BUD31 homolog	protein-coding
28.8941-2	chr2	195755404	195755903	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	160334	NR_110223	101927431	Hs.558215	NR_110223	ENSG00000230173	LINC01790	-	long intergenic non-protein coding RNA 1790	ncRNA
1.41463-4	chr18	6729104	6729603	+	0	NA	intron (NR_134645, intron 1 of 1)	(CA)n|Simple_repeat|Simple_repeat	508	NR_134645	101927168	Hs.242240	NR_134645		LOC101927168	-	uncharacterized LOC101927168	ncRNA
18.3863-5	chr20	19899492	19899991	+	0	NA	intron (NM_001242581, intron 2 of 11)	intron (NM_001242581, intron 2 of 11)	29531	NM_018993	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
0.835461-10	chr14	38106519	38107018	+	0	NA	intron (NM_001310135, intron 3 of 32)	AluJr4|SINE|Alu	42364	NM_001310135	319089	Hs.659936	NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
1.39662-24	chr20	25293740	25294239	+	0	NA	intron (NM_001042472, intron 6 of 12)	SVA_C|Other|Other	65283	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
21.7783	chr18	8301368	8301867	+	0	NA	intron (NM_001105244, intron 20 of 32)	L2a|LINE|L2	65415	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
6.51695-4	chr12	13080272	13080771	+	0	NA	Intergenic	Intergenic	11758	NR_030345	693199		NR_030345	ENSG00000013588	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
0.731433-11	chr17	26645750	26646249	+	0	NA	promoter-TSS (NM_014573)	promoter-TSS (NM_014573)	-122	NM_014573	27346	Hs.199695	NM_014573	ENSG00000109084	TMEM97	MAC30	transmembrane protein 97	protein-coding
3.13364-6	chr22	30722748	30723247	+	0	NA	promoter-TSS (NM_001204240)	promoter-TSS (NM_001204240)	-42	NM_001204240	83874	Hs.655273	NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
8.35647-8	chr3	196411767	196412266	+	0	NA	Intergenic	Intergenic	27149	NM_032898	84984	Hs.282800	NM_032898	ENSG00000174007	CEP19	C3orf34|MOSPGF	centrosomal protein 19	protein-coding
0.565055-9	chr14	61664024	61664523	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	84257	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
20.8145-2	chr8	95961461	95961960	+	0	NA	promoter-TSS (NM_033285)	promoter-TSS (NM_033285)	-95	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
16.1798-4	chr14	66256860	66257359	+	0	NA	Intergenic	Intergenic	319289	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
2.11125-3	chr6	69268924	69269423	+	0	NA	Intergenic	Intergenic	75043	NR_125872	101928307	Hs.535825	NR_125872	ENSG00000230910	LOC101928307	-	uncharacterized LOC101928307	ncRNA
0.319843-3	chr7	135486641	135487140	+	0	NA	Intergenic	Intergenic	-53296	NM_205855	389558	Hs.55200	NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
0.414361-20	chr5	27682651	27683150	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	210501	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
5.0724-5	chr10	32038166	32038665	+	0	NA	Intergenic	Intergenic	159439	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
5.0724-7	chr12	113502734	113503233	+	0	NA	intron (NM_004416, intron 1 of 8)	intron (NM_004416, intron 1 of 8)	7321	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
7.82516-4	chr7	8301959	8302458	+	0	NA	promoter-TSS (NM_001136020)	promoter-TSS (NM_001136020)	34	NM_001276478	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
3.88277-2	chr2	219773820	219774319	+	0	NA	intron (NR_110238, intron 3 of 4)	CpG	21290	NR_110238	101928537	Hs.611129	NR_110238	ENSG00000228135	LINC01494	-	long intergenic non-protein coding RNA 1494	ncRNA
15.6703-3	chr4	165927410	165927909	+	0	NA	Intergenic	Intergenic	-25492	NM_152620	166655	Hs.368004	NM_152620	ENSG00000176979	TRIM60	RNF129|RNF33	tripartite motif containing 60	protein-coding
4.92144-4	chr1	224828622	224829121	+	0	NA	intron (NR_136287, intron 1 of 4)	intron (NR_136287, intron 1 of 4)	24692	NM_152495	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
1.95861-8	chr3	135048282	135048781	+	0	NA	Intergenic	Intergenic	534432	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
0.570004-5	chr15	93631437	93631936	+	0	NA	promoter-TSS (NM_001166287)	promoter-TSS (NM_001166287)	66	NM_001166287	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
0.0966115-9	chr3	33480920	33481419	+	0	NA	intron (NM_001128161, intron 2 of 16)	CpG	701	NM_001128160	7342	Hs.729120	NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1 (LBP-1a)	protein-coding
21.8376-3	chrX	68627552	68628051	+	0	NA	Intergenic	Intergenic	-97277	NM_015686	27112	Hs.87619	NM_015686	ENSG00000130054	FAM155B	CXorf63|TED|TMEM28|bB57D9.1	family with sequence similarity 155 member B	protein-coding
0.540393-30	chr11	46535310	46535809	+	0	NA	intron (NM_001300731, intron 7 of 16)	intron (NM_001300731, intron 7 of 16)	-62120	NR_036117	100422827		NR_036117	ENSG00000265014	MIR3160-1	mir-3160-1	microRNA 3160-1	ncRNA
0.443122-8	chr17	17743281	17743780	+	0	NA	Intergenic	CpG	-3205	NM_001005291	6720	Hs.592123	NM_004176	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|SREBP1a|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
2.35824-7	chr5	443422	443921	+	0	NA	promoter-TSS (NR_126522)	promoter-TSS (NR_126522)	337	NM_007277	11336	Hs.481464	NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
3.95774-7	chr11	34392907	34393406	+	0	NA	Intergenic	Intergenic	-13601	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
0.530567-18	chr6	113022391	113022890	+	0	NA	Intergenic	LTR16A|LTR|ERVL	354108	NM_001013734	442247	Hs.448264	NM_001013734	ENSG00000251258	RFPL4B	RNF211	ret finger protein like 4B	protein-coding
1.19186-23	chr5	32601936	32602435	+	0	NA	3' UTR (NM_006713, exon 5 of 5)	3' UTR (NM_006713, exon 5 of 5)	16580	NM_006713	10923	Hs.229641	NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 homolog, transcriptional regulator	protein-coding
4.08935-3	chr6	42016326	42016825	+	0	NA	promoter-TSS (NM_001136017)	promoter-TSS (NM_001136017)	57	NM_001136017	896	Hs.534307	NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
1.58015-8	chr6	90121921	90122420	+	0	NA	promoter-TSS (NM_021244)	promoter-TSS (NM_021244)	-175	NM_021244	58528	Hs.31712	NM_021244	ENSG00000025039	RRAGD	RAGD|bA11D8.2.1	Ras related GTP binding D	protein-coding
1.88425-4	chr4	657293	657792	+	0	NA	intron (NM_001145292, intron 13 of 19)	CpG	10576	NM_001145292	5158	Hs.623810	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
12.4413-4	chr12	55402972	55403471	+	0	NA	Intergenic	Intergenic	-10508	NM_021191	58158	Hs.591024	NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
7.05534-5	chr13	22512428	22512927	+	0	NA	Intergenic	Intergenic	-60378	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
13.3913	chr11	122956925	122957424	+	0	NA	intron (NM_024769, intron 2 of 6)	intron (NM_024769, intron 2 of 6)	-24131	NM_006597	3312	Hs.180414	NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
1.08463-6	chr11	47437646	47438145	+	0	NA	non-coding (NR_134854, exon 11 of 11)	non-coding (NR_134854, exon 11 of 11)	7844	NM_001330245	91252	Hs.523664	NM_152264	ENSG00000165915	SLC39A13	LZT-Hs9	solute carrier family 39 member 13	protein-coding
0.634863-18	chr5	175081187	175081686	+	0	NA	Intergenic	Intergenic	-3604	NM_001131055	3274	Hs.247885	NM_022304	ENSG00000113749	HRH2	H2R	histamine receptor H2	protein-coding
1.22629-23	chr17	38716463	38716962	+	0	NA	promoter-TSS (NM_001301718)	promoter-TSS (NM_001301718)	-66	NM_001301718	1236	Hs.370036	NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
1.77178-14	chr19	46430831	46431330	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-13044	NM_001029861	339345	Hs.434218	NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
4.82804-2	chr18	21976956	21977455	+	0	NA	intron (NM_080597, intron 1 of 27)	intron (NM_080597, intron 1 of 27)	628	NM_080597	114876	Hs.370725	NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
4.55932-7	chr3	51998123	51998622	+	0	NA	intron (NM_020418, intron 1 of 12)	intron (NM_020418, intron 1 of 12)	-1464	NM_033010	57060	Hs.20930	NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
8.41638-14	chr7	22526172	22526671	+	0	NA	intron (NM_001164460, intron 4 of 4)	intron (NM_001164460, intron 4 of 4)	13480	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
0.0524306-3	chr20	31407377	31407876	+	0	NA	promoter-TSS (NM_012325)	promoter-TSS (NM_012325)	-73	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
9.82967-6	chr8	11247574	11248073	+	0	NA	intron (NR_026814, intron 2 of 6)	intron (NR_026814, intron 2 of 6)	21912	NR_026814	83656	Hs.583896	NM_054017	ENSG00000184608	FAM167A-AS1	C8orf12	FAM167A antisense RNA 1	ncRNA
1.06238-3	chr19	18059689	18060188	+	0	NA	Intergenic	CpG	-2173	NM_002248	3780	Hs.158173	NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
2.01349-6	chr1	52088062	52088561	+	0	NA	intron (NM_148906, intron 1 of 22)	MLT1F1|LTR|ERVL-MaLR	5765	NM_148909	114883	Hs.21938	NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
0.291884-35	chr11	22453737	22454236	+	0	NA	Intergenic	Intergenic	59579	NR_120583	102723378	Hs.374255	NR_120583	ENSG00000255323	LINC01495	-	long intergenic non-protein coding RNA 1495	ncRNA
7.98603-10	chr2	2580987	2581486	+	0	NA	Intergenic	Intergenic	-246151	NM_015025	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
1.44481-6	chr8	146126174	146126673	+	0	NA	intron (NM_021061, intron 1 of 5)	CpG	423	NM_001109689	58500	Hs.532277	NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
0.670192-13	chr1	10927134	10927633	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-70650	NM_001079843	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
6.00326-6	chr8	141656549	141657048	+	0	NA	Intergenic	Intergenic	-11152	NM_001164623	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
5.36107	chr11	74460179	74460678	+	0	NA	intron (NM_001098638, intron 1 of 5)	CpG	515	NM_001098638	254225	Hs.370145	NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
17.7989-2	chr5	79394747	79395246	+	0	NA	Intergenic	Intergenic	-15508	NR_109930	101929215		NR_109930	ENSG00000249825	CTD-2201I18.1	-	uncharacterized LOC101929215	ncRNA
1.23205-12	chr21	47393472	47393971	+	0	NA	intron (NR_109931, intron 1 of 1)	CpG	837	NR_109931	101928796	Hs.130919	NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
2.45652-8	chr10	128792516	128793015	+	0	NA	intron (NM_001380, intron 6 of 51)	SVA_B|Other|Other	198787	NM_001380	1793	Hs.159195	NM_001380	ENSG00000150760	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
3.43902-3	chr1	28827487	28827986	+	0	NA	TTS (NM_001048183)	TTS (NM_001048183)	-4719	NR_030726	1104	Hs.469723	NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I|SNHG3-RCC1	regulator of chromosome condensation 1	protein-coding
3.9794-22	chr9	94644840	94645339	+	0	NA	intron (NM_004560, intron 1 of 8)	MLT1B|LTR|ERVL-MaLR	67355	NM_004560	4920	Hs.98255	NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
0.680339-10	chr9	23820776	23821275	+	0	NA	intron (NM_004432, intron 1 of 6)	CpG	453	NM_001171197	1993	Hs.166109	NM_004432	ENSG00000107105	ELAVL2	HEL-N1|HELN1|HUB	ELAV like RNA binding protein 2	protein-coding
2.84833-8	chr19	3276344	3276843	+	0	NA	intron (NM_021938, intron 4 of 12)	intron (NM_021938, intron 4 of 12)	51110	NR_033342	60680	Hs.655747	NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP, Elav-like family member 5	protein-coding
21.4026	chr10	84079271	84079770	+	0	NA	intron (NM_001165973, intron 2 of 10)	intron (NM_001165973, intron 2 of 10)	-86844	NR_120666	101929590	Hs.733268	NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA
16.1439-3	chr3	137054205	137054704	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	377747	NM_144717	53833	Hs.61232	NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
4.84126-4	chr22	50364335	50364834	+	0	NA	Intergenic	Intergenic	8070	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
1.58641-12	chr19	41256810	41257309	+	0	NA	5' UTR (NM_004596, exon 1 of 6)	5' UTR (NM_004596, exon 1 of 6)	300	NM_004596	6626	Hs.466775	NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
1.91789-13	chr7	65987468	65987967	+	0	NA	Intergenic	Intergenic	29039	NR_134571	100289098	Hs.662276	NR_134570	ENSG00000237310	GS1-124K5.4	-	uncharacterized LOC100289098	ncRNA
8.06875-7	chr16	14107259	14107758	+	0	NA	intron (NR_110909, intron 1 of 2)	intron (NR_110909, intron 1 of 2)	2367	NR_110909	101927311		NR_110909	ENSG00000262097	LOC101927311	-	uncharacterized LOC101927311	ncRNA
3.72634-5	chr1	179784133	179784632	+	0	NA	3' UTR (NM_001329713, exon 6 of 6)	3' UTR (NM_001329713, exon 6 of 6)	62559	NM_145034	163590	Hs.571797	NM_022347	ENSG00000169905	TOR1AIP2	IFRG15|LULL1|NET9	torsin 1A interacting protein 2	protein-coding
4.76254-14	chr16	22217265	22217764	+	0	NA	promoter-TSS (NM_013302)	promoter-TSS (NM_013302)	-78	NM_013302	29904	Hs.498892	NM_013302	ENSG00000103319	EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
1.85752-8	chr19	44123910	44124409	+	0	NA	promoter-TSS (NM_182498)	promoter-TSS (NM_182498)	-145	NM_182498	126299	Hs.99093	NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
6.16185-4	chr16	66463285	66463784	+	0	NA	intron (NM_001197225, intron 1 of 4)	intron (NM_001197225, intron 1 of 4)	2334	NM_001197225	146227	Hs.97805	NM_001136106	ENSG00000166546	BEAN1	BEAN|SCA31	brain expressed, associated with NEDD4, 1	protein-coding
2.97569-7	chr17	2304808	2305531	+	0	NA	promoter-TSS (NM_020310)	promoter-TSS (NM_020310)	-911	NM_020310	4335	Hs.626579	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
0.145735-11	chr22	21869267	21869766	+	0	NA	intron (NR_003700, intron 1 of 16)	intron (NR_003700, intron 1 of 16)	2264	NR_003700	375133	Hs.448225	NR_003700	ENSG00000183506	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
3.01899-23	chr9	7163383	7163882	+	0	NA	intron (NM_015061, intron 19 of 21)	intron (NM_015061, intron 19 of 21)	405991	NR_130707	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
1.31356-4	chr3	122785613	122786112	+	0	NA	promoter-TSS (NR_028444)	promoter-TSS (NR_028444)	6	NM_006810	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
1.26679-8	chr7	89975944	89976443	+	0	NA	intron (NM_001042717, intron 1 of 7)	intron (NM_001042717, intron 1 of 7)	214	NM_001042717	85865	Hs.593547	NM_033107	ENSG00000105793	GTPBP10	ObgH2|UG0751c10	GTP binding protein 10	protein-coding
0.11441-6	chr13	20701544	20702043	+	0	NA	Intergenic	Intergenic	24953	NR_126380	104355137	Hs.578016	NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
1.67491-18	chr9	3526920	3527419	+	0	NA	Intergenic	Intergenic	-1168	NM_134428	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
2.18963-3	chr3	49740845	49741344	+	0	NA	intron (NM_022064, intron 21 of 38)	intron (NM_022064, intron 21 of 38)	14162	NR_135218	63891	Hs.553723	NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
3.34419-11	chr3	135882335	135882834	+	0	NA	intron (NM_018133, intron 1 of 1)	THE1C|LTR|ERVL-MaLR	30726	NM_001145417	55167	Hs.18631	NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
3.23306-8	chr1	201123205	201123704	+	0	NA	non-coding (NR_109921, exon 1 of 5)	non-coding (NR_109921, exon 1 of 5)	229	NM_001288570	252839	Hs.181444	NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
3.91474-3	chrX	79847281	79847780	+	0	NA	Intergenic	SVA_D|Other|Other	171584	NM_152630	169966	Hs.367959	NM_152630	ENSG00000174016	FAM46D	CT1.26|CT112	family with sequence similarity 46 member D	protein-coding
15.544-6	chr6	39298206	39298705	+	0	NA	Intergenic	Intergenic	-8125	NM_001135107	83795	Hs.287765	NM_032115	ENSG00000095981	KCNK16	K2p16.1|TALK-1|TALK1	potassium two pore domain channel subfamily K member 16	protein-coding
10.4721	chr5	38466290	38466789	+	0	NA	TTS (NM_182798)	TTS (NM_182798)	20961	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
1.75874-10	chr18	12645639	12646138	+	0	NA	intron (NM_001128626, intron 1 of 16)	L2c|LINE|L2	10843	NM_001128627	56907	Hs.515283	NM_020148	ENSG00000134278	SPIRE1	Spir-1	spire type actin nucleation factor 1	protein-coding
0.181814-4	chr18	66881609	66882108	+	0	NA	Intergenic	AluJb|SINE|Alu	-186426	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
0.472076-15	chr6	34433559	34434058	+	0	NA	promoter-TSS (NM_020804)	promoter-TSS (NM_020804)	-30	NM_020804	29993	Hs.520087	NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
27.7989	chr1	109798253	109798752	+	0	NA	intron (NM_001408, intron 1 of 33)	intron (NM_001408, intron 1 of 33)	5861	NM_001408	1952	Hs.57652	NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
14.7625-4	chr17	38752786	38753285	+	0	NA	Intergenic	Intergenic	-31299	NM_001301714	1236	Hs.370036	NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
6.57577-4	chr12	102514607	102515106	+	0	NA	promoter-TSS (NM_024057)	promoter-TSS (NM_024057)	907	NM_001319995	55010	Hs.330663	NM_017915	ENSG00000185480	PARPBP	AROM|C12orf48|PARI	PARP1 binding protein	protein-coding
0.619809-2	chr6	134245005	134245504	+	0	NA	Intergenic	Intergenic	-28054	NM_001253676	9519	Hs.486507	NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
0.893756-5	chr21	45303743	45304242	+	0	NA	intron (NM_020132, intron 1 of 9)	intron (NM_020132, intron 1 of 9)	18876	NM_020132	56894	Hs.248785	NM_020132	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
9.62574-14	chr19	34808417	34808916	+	0	NA	intron (NM_014686, intron 2 of 13)	MIR|SINE|MIR	-46979	NM_001289789	2821	Hs.466471	NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
3.8934-14	chr17	58255399	58255898	+	0	NA	non-coding (NR_137422, exon 12 of 12)	non-coding (NR_137422, exon 12 of 12)	28351	NR_137422	762	Hs.89485	NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
2.28413-10	chr4	71569357	71569856	+	0	NA	Intergenic	Intergenic	-1048	NM_001130709	22902	Hs.740904	NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
9.28118-8	chr1	227619364	227619863	+	0	NA	Intergenic	Intergenic	-113787	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha	protein-coding
2.95849-9	chr4	146403599	146404098	+	0	NA	promoter-TSS (NM_001003688)	promoter-TSS (NM_001003688)	-109	NM_001003688	4086	Hs.604588	NM_005900	ENSG00000170365	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
3.91474	chrX	144518151	144518650	+	0	NA	Intergenic	SVA_D|Other|Other	189293	NM_001009614	494118	Hs.551270	NM_001009614	ENSG00000203923	SPANXN1	CT11.6	SPANX family member N1	protein-coding
21.8376-2	chr4	119288977	119289476	+	0	NA	Intergenic	Intergenic	-15304	NM_003619	8492	Hs.445857	NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine 12	protein-coding
19.1009	chr4	77654440	77654939	+	0	NA	intron (NM_020859, intron 4 of 10)	intron (NM_020859, intron 4 of 10)	157985	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
0.0877392-26	chr12	48232947	48233446	+	0	NA	Intergenic	Intergenic	-19433	NM_015401	51564	Hs.200063	NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
2.88193-20	chr13	63056373	63056872	+	0	NA	Intergenic	LTR18A|LTR|ERVL	270207	NR_125787	103752583	Hs.578048	NR_125787		LINC01075	-	long intergenic non-protein coding RNA 1075	ncRNA
1.62412-9	chr15	68851925	68852424	+	0	NA	intron (NM_001324014, intron 2 of 12)	CpG	-19134	NM_006091	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
0.428718-36	chr2	160759127	160759626	+	0	NA	intron (NM_001198759, intron 1 of 38)	intron (NM_001198759, intron 1 of 38)	1891	NM_002349	4065	Hs.153563	NM_002349	ENSG00000054219	LY75	CD205|CLEC13B|DEC-205|GP200-MR6|LY-75	lymphocyte antigen 75	protein-coding
16.8613	chr20	46476571	46477070	+	0	NA	Intergenic	Intergenic	-61460	NM_198596	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
2.28413-4	chr14	58355981	58356480	+	0	NA	Intergenic	Intergenic	-23638	NM_001306087	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35 member F4	protein-coding
2.26945-11	chr16	2569895	2570394	+	0	NA	promoter-TSS (NM_001145815)	promoter-TSS (NM_001145815)	-202	NM_001330449	51005	Hs.740430	NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
3.12471-9	chr1	231297066	231297565	+	0	NA	Intergenic	CpG	-1359	NM_001004342	440730	Hs.655089	NM_001004342	ENSG00000119283	TRIM67	TNL	tripartite motif containing 67	protein-coding
1.64944-13	chr15	52044062	52044561	+	0	NA	promoter-TSS (NM_001143917)	promoter-TSS (NM_001143917)	553	NM_014548	29767	Hs.513734	NM_014548	ENSG00000128872	TMOD2	N-TMOD|NTMOD	tropomodulin 2	protein-coding
0.0217692-24	chrX	153991503	153992002	+	0	NA	intron (NR_110023, intron 1 of 14)	CpG	735	NR_110023	1736	Hs.4747	NM_001363	ENSG00000130826	DKC1	CBF5|DKC|DKCX|NAP57|NOLA4|XAP101	dyskerin pseudouridine synthase 1	protein-coding
12.3359	chr6	138504087	138505005	+	0	NA	intron (NM_020340, intron 2 of 33)	intron (NM_020340, intron 2 of 33)	21493	NM_020340	57221	Hs.194408	NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding
1.19186-26	chr7	16700524	16701023	+	0	NA	intron (NR_027624, intron 1 of 10)	intron (NR_027624, intron 1 of 10)	15014	NR_027624	28969	Hs.487635	NM_014038	ENSG00000136261	BZW2	HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
0.0877392-48	chr4	77008235	77008734	+	0	NA	intron (NM_001179, intron 3 of 10)	intron (NM_001179, intron 3 of 10)	12636	NM_001130016	419	Hs.24976	NM_001179	ENSG00000156219	ART3	ARTC3	ADP-ribosyltransferase 3	protein-coding
0.141246-38	chr12	47473060	47473559	+	0	NA	promoter-TSS (NM_001281429)	promoter-TSS (NM_001281429)	-77	NM_138371	91523	Hs.560100	NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
13.2514-3	chr5	134745152	134745651	+	0	NA	Intergenic	SVA_C|Other|Other	-9824	NM_004893	9555	Hs.420272	NM_004893	ENSG00000113648	H2AFY	H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2	H2A histone family member Y	protein-coding
7.03335	chr17	61513831	61514330	+	0	NA	intron (NM_001330421, intron 2 of 5)	intron (NM_001330421, intron 2 of 5)	3492	NM_001330421	1534	Hs.355264	NM_001915	ENSG00000008283	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
4.46117-6	chr12	45610028	45610527	+	0	NA	promoter-TSS (NR_037144)	promoter-TSS (NR_037144)	-488	NR_037144	51054	Hs.233495	NM_015899	ENSG00000134297	PLEKHA8P1	PLEKHA9	pleckstrin homology domain containing A8 pseudogene 1	pseudo
5.43634-3	chr2	227664223	227664722	+	0	NA	promoter-TSS (NM_005544)	promoter-TSS (NM_005544)	-966	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
1.37869-7	chr11	60692930	60693429	+	0	NA	intron (NM_178031, intron 1 of 10)	intron (NM_178031, intron 1 of 10)	1266	NM_017870	54972	Hs.118552	NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
55.9176-2	chr1	40420516	40421015	+	0	NA	promoter-TSS (NM_001136493)	promoter-TSS (NM_001136493)	-19	NM_032793	84879	Hs.655177	NM_032793	ENSG00000168389	MFSD2A	MCPH15|MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
0.268721-33	chr4	10764006	10764505	+	0	NA	Intergenic	Intergenic	-77869	NM_052964	116449	Hs.678910	NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
0.390538-17	chr7	108244579	108245078	+	0	NA	Intergenic	Intergenic	-34616	NM_001287601	168451	Hs.707689	NM_182529	ENSG00000177683	THAP5	-	THAP domain containing 5	protein-coding
2.46417	chr4	186317534	186318033	+	0	NA	promoter-TSS (NM_181726)	promoter-TSS (NM_181726)	-57	NM_181726	353322	Hs.508154	NM_181726	ENSG00000186352	ANKRD37	Lrp2bp	ankyrin repeat domain 37	protein-coding
1.18615-11	chr3	128902484	128902983	+	0	NA	promoter-TSS (NM_003418)	promoter-TSS (NM_003418)	77	NM_001127193	7555	Hs.518249	NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
0.76238-2	chr1	244014670	244015169	+	0	NA	Intergenic	Intergenic	-8033	NM_001206729	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
4.00117-10	chr2	3032822	3033321	+	0	NA	intron (NR_110228, intron 3 of 6)	L1MDa|LINE|L1	96727	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
3.26058-3	chr4	2798125	2798624	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	3624	NM_001122681	6452	Hs.167679	NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
2.54145-14	chr18	10035359	10035858	+	0	NA	Intergenic	Intergenic	121653	NM_194434	9218	Hs.165195	NM_003574	ENSG00000101558	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
0.190881-24	chr16	79804039	79804538	+	0	NA	promoter-TSS (NR_104660)	promoter-TSS (NR_104660)	-80	NR_104660	101928248	Hs.659802	NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
0.0130484-40	chr17	41837667	41838166	+	0	NA	Intergenic	Intergenic	-1760	NM_025237	50964	Hs.349204	NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
3.23306-4	chr6	13470467	13470966	+	0	NA	non-coding (NR_038459, exon 2 of 2)	non-coding (NR_038459, exon 2 of 2)	1579	NR_038459	54438	Hs.484686	NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
1.84422-14	chr6	40553275	40553774	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	1679	NM_020737	57497	Hs.250015	NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
1.53045-21	chr1	5879563	5880062	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	42989	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
0.127808-13	chr19	3093937	3094436	+	0	NA	promoter-TSS (NM_002067)	promoter-TSS (NM_002067)	-222	NM_002067	2767	Hs.650575	NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
0.385789-38	chr15	63074133	63074632	+	0	NA	intron (NM_015059, intron 41 of 55)	LFSINE_Vert|SINE|SINE	-41774	NR_029709	406965		NR_029709	ENSG00000211137	MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a	microRNA 190a	ncRNA
1.20331-14	chr13	23949016	23949515	+	0	NA	exon (NM_014363, exon 3 of 10)	exon (NM_014363, exon 3 of 10)	417	NM_001278055	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
1.54282-10	chr1	112912198	112912697	+	0	NA	Intergenic	Intergenic	-26353	NM_018704	55917	Hs.744100	NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
6.81937-18	chr4	154042455	154042954	+	0	NA	Intergenic	Intergenic	-31566	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
5.157-4	chr8	124328337	124328836	+	0	NA	Intergenic	SVA_D|Other|Other	31784	NR_030382	693130		NR_030382	ENSG00000283172	MIR548D1	MIRN548D1	microRNA 548d-1	ncRNA
0.520764-11	chr8	125728550	125729049	+	0	NA	intron (NM_014751, intron 1 of 13)	MER5A|DNA|hAT-Charlie	11949	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
0.920515-11	chr11	58346762	58347400	+	0	NA	exon (NM_053023, exon 1 of 11)	exon (NM_053023, exon 1 of 11)	494	NM_053023	80829	Hs.524920	NM_053023	ENSG00000186660	ZFP91	DMS-8|DSM-8|FKSG11|PZF|ZFP-91|ZNF757	ZFP91 zinc finger protein	protein-coding
2.38072-3	chr5	173314697	173315196	+	0	NA	promoter-TSS (NM_001308189)	promoter-TSS (NM_001308189)	-385	NM_001308191	80315	Hs.127126	NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
4.53457-9	chr1	214620023	214620522	+	0	NA	intron (NM_005401, intron 3 of 18)	intron (NM_005401, intron 3 of 18)	104752	NM_005401	5784	Hs.193557	NM_005401	ENSG00000152104	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
0.109954-11	chr11	61500781	61501280	+	0	NA	intron (NM_006133, intron 9 of 19)	intron (NM_006133, intron 9 of 19)	-19079	NM_001127392	745	Hs.473109	NM_013279	ENSG00000124920	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
5.39102-3	chr3	193775941	193776440	+	0	NA	intron (NR_136181, intron 1 of 3)	CpG	11128	NR_136181	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
1.97226-8	chr11	74288988	74289487	+	0	NA	Intergenic	Intergenic	-14338	NR_046409	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
22.66	chr18	54305706	54306205	+	0	NA	promoter-TSS (NM_004786)	promoter-TSS (NM_004786)	-35	NR_024546	9352	Hs.114412	NM_004786	ENSG00000091164	TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin like 1	protein-coding
2.29885-10	chr9	116231286	116231785	+	0	NA	intron (NM_001282923, intron 1 of 22)	intron (NM_001282923, intron 1 of 22)	5555	NM_017790	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
14.8017	chr22	36727407	36727906	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-44703	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
1.4752-11	chr9	80346208	80346707	+	0	NA	intron (NM_002072, intron 5 of 6)	intron (NM_002072, intron 5 of 6)	-83225	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
7.03335-5	chr13	41030538	41031037	+	0	NA	intron (NR_024507, intron 5 of 6)	intron (NR_024507, intron 5 of 6)	24356	NR_024507	646982	Hs.287664	NR_024505	ENSG00000215483	LINC00598	-	long intergenic non-protein coding RNA 598	ncRNA
7.67004	chr13	112624635	112625134	+	0	NA	Intergenic	Intergenic	-1740	NR_120392	100505996	Hs.654853	NR_120392	ENSG00000224243	LINC00403	-	long intergenic non-protein coding RNA 403	ncRNA
0.400052-9	chr13	76784335	76784834	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	333562	NR_126373	104326189	Hs.671216	NR_126373	ENSG00000223458	LMO7DN-IT1	C13orf45-IT1|TCONS_00021569	LMO7DN intronic transcript 1	ncRNA
1.45694-11	chr11	78076207	78076706	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	-23530	NM_012296	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
8.99629-4	chr7	50889143	50889642	+	0	NA	Intergenic	Intergenic	-28233	NM_001001555	2887	Hs.164060	NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
0.254883-33	chr22	42776058	42776557	+	0	NA	TTS (NM_001318323)	TTS (NM_001318323)	-11093	NR_120595	102723775	Hs.335413	NR_120595	ENSG00000229891	LINC01315	lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
1.44481-9	chrX	38924390	38925182	+	0	NA	Intergenic	Intergenic	-261650	NR_046706	100874211	Hs.662789	NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
20.716	chr4	39734254	39734753	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSz6|SINE|Alu	34839	NM_005339	3093	Hs.50308	NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
1.09579-2	chr4	109291467	109291966	+	0	NA	Intergenic	Intergenic	-186673	NR_134679	101929621	Hs.679455	NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
0.190881-28	chr11	124514242	124514741	+	0	NA	intron (NM_170601, intron 7 of 9)	intron (NM_170601, intron 7 of 9)	8097	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
0.9691-14	chr11	110002372	110002871	+	0	NA	intron (NM_033390, intron 1 of 5)	intron (NM_033390, intron 1 of 5)	38534	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
11.9044-5	chr10	80787427	80787926	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	39529	NR_015429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
8.86057-16	chr1	228965180	228965679	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	94605	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
0.525663-11	chr9	20066018	20066517	+	0	NA	Intergenic	Intergenic	-279250	NM_020344	25769	Hs.283014	NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
4.43697-6	chr17	69398978	69399567	+	0	NA	Intergenic	Intergenic	-200952	NR_104152	101928165	Hs.407613	NR_104152	ENSG00000260785	CASC17	LINC00600	cancer susceptibility candidate 17 (non-protein coding)	ncRNA
0.385789-32	chr2	99386139	99386638	+	0	NA	intron (NR_126337, intron 1 of 3)	intron (NR_126337, intron 1 of 3)	1973	NR_126337	101927070	Hs.469395	NR_126337		LOC101927070	-	uncharacterized LOC101927070	ncRNA
0.501223-11	chr11	43968517	43969016	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	4660	NM_001145033	387763	Hs.530443	NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
3.16053-6	chr1	37323214	37323713	+	0	NA	intron (NM_000831, intron 7 of 15)	intron (NM_000831, intron 7 of 15)	176381	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding
0.277972-3	chr19	59084442	59084941	+	0	NA	non-coding (NR_027334, exon 6 of 6)	non-coding (NR_027334, exon 6 of 6)	251	NM_198055	7593	Hs.399810	NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding
1.16907-3	chrX	79651759	79652258	+	0	NA	intron (NM_001170574, intron 3 of 4)	SVA_D|Other|Other	-23938	NM_152630	169966	Hs.367959	NM_152630	ENSG00000174016	FAM46D	CT1.26|CT112	family with sequence similarity 46 member D	protein-coding
0.168249-17	chr17_gl000205_random	82968	83467	+	0	NA	Intergenic	L1MB3|LINE|L1	-33406	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
1.4691-15	chr3	123477001	123477500	+	0	NA	intron (NM_053027, intron 4 of 32)	intron (NM_053027, intron 4 of 32)	68759	NR_046629	100873940	Hs.667316	NR_046629	ENSG00000250174	MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
1.01824-7	chr7	101500130	101500629	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	39497	NM_181552	1523	Hs.191482	NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
2.86509-4	chr12	32846410	32846909	+	0	NA	intron (NM_001330380, intron 1 of 18)	AluJb|SINE|Alu	14525	NM_001330380	10059	Hs.556296	NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV	dynamin 1 like	protein-coding
9.82967-15	chr7	13506565	13507064	+	0	NA	Intergenic	Intergenic	519325	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
24.1454-2	chr11	12824131	12824630	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	128411	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
2.52588-16	chr17	57696693	57697192	+	0	NA	promoter-TSS (NM_004859)	promoter-TSS (NM_004859)	-108	NM_004859	1213	Hs.491351	NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc	clathrin heavy chain	protein-coding
7.64472-4	chr12	72754534	72755033	+	0	NA	intron (NM_013381, intron 2 of 18)	L1PA10|LINE|L1	-87494	NR_026836	283392	Hs.363603	NM_001025457	ENSG00000236333	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
0.070049-19	chr8	107775186	107775685	+	0	NA	intron (NM_139166, intron 1 of 1)	intron (NM_139166, intron 1 of 1)	7037	NM_139166	137735	Hs.374668	NM_139166	ENSG00000174429	ABRA	STARS	actin binding Rho activating protein	protein-coding
15.4668-2	chr3	134528171	134528670	+	0	NA	intron (NM_004441, intron 1 of 15)	intron (NM_004441, intron 1 of 15)	14321	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
0.264104-3	chr14	65322348	65322847	+	0	NA	Intergenic	Intergenic	-32731	NM_000347	6710	Hs.417303	NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding
1.53045-11	chr9	120309174	120309673	+	0	NA	Intergenic	Intergenic	-101461	NR_109806	101928797	Hs.382317	NR_109806	ENSG00000233569	LOC101928797	-	uncharacterized LOC101928797	ncRNA
0.338583-31	chr20	19945105	19945604	+	0	NA	intron (NM_001242581, intron 5 of 11)	intron (NM_001242581, intron 5 of 11)	-52580	NM_181528	51126	Hs.368783	NM_016100	ENSG00000173418	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
22.4489-2	chr12	108787633	108788132	+	0	NA	Intergenic	Intergenic	-54788	NM_001142344	1240	Hs.197143	NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemerin chemokine-like receptor 1	protein-coding
6.38272-3	chr7	99200384	99200883	+	0	NA	intron (NM_001195543, intron 2 of 5)	AluJo|SINE|Alu	4944	NM_001195541	100289187	Hs.729333	NM_001195541		GS1-259H13.2	-	transmembrane protein 225-like	protein-coding
8.76148-13	chr7	151157096	151157595	+	0	NA	Intergenic	Intergenic	-19446	NR_131779	155051	Hs.647104	NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
4.27128-6	chr20	18037877	18038376	+	0	NA	intron (NM_001303461, intron 1 of 3)	CpG-16434	400	NM_021220	58495	Hs.661013	NM_021220	ENSG00000125850	OVOL2	EUROIMAGE566589|PPCD1|ZNF339	ovo like zinc finger 2	protein-coding
0.172766-12	chr1	5569844	5570343	+	0	NA	Intergenic	Intergenic	-54038	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	mir-4417	microRNA 4417	ncRNA
11.4146	chr2	208773328	208773827	+	0	NA	intron (NM_001080475, intron 5 of 7)	MIR3|SINE|MIR	116707	NM_001080475	389072	Hs.159188	NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
0.501223-15	chr11	15230070	15230569	+	0	NA	intron (NM_001278315, intron 6 of 12)	intron (NM_001278315, intron 6 of 12)	59671	NM_001278314	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
0.79355-35	chr3	97001355	97001854	+	0	NA	intron (NM_001080448, intron 5 of 17)	L1PA10|LINE|L1	-156833	NM_173655	285220	Hs.272208	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
2.47184-25	chr1	36192370	36192869	+	0	NA	intron (NM_001330490, intron 24 of 24)	intron (NM_001330490, intron 24 of 24)	-7829	NM_152374	127703	Hs.112023	NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
0.629839-3	chr4	25914837	25915336	+	0	NA	promoter-TSS (NM_001145432)	promoter-TSS (NM_001145432)	-728	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7	small integral membrane protein 20	protein-coding
1.11821-5	chr8	748732	749231	+	0	NA	intron (NM_001346810, intron 1 of 14)	intron (NM_001346810, intron 1 of 14)	60433	NR_134292	401442	Hs.678992	NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
14.5842-2	chr12	12770561	12771060	+	0	NA	intron (NM_001310, intron 1 of 3)	SVA_B|Other|Other	6043	NM_001310	1389	Hs.591156	NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
2.47184-10	chr4	138147986	138148485	+	0	NA	Intergenic	Intergenic	33325	NR_134640	729307	Hs.552764	NR_134640		LOC729307	-	uncharacterized LOC729307	ncRNA
7.47147-21	chr14	60206436	60206935	+	0	NA	intron (NM_021136, intron 2 of 8)	intron (NM_021136, intron 2 of 8)	-92947	NR_049851	100847088		NR_049851	ENSG00000263629	MIR5586	-	microRNA 5586	ncRNA
33.8091	chr21	45937124	45937623	+	0	NA	TTS (NR_103707)	TTS (NR_103707)	275	NR_026548	114043	Hs.592163	NM_153204		TSPEAR-AS2	C21orf90	TSPEAR antisense RNA 2	ncRNA
8.01343-5	chr10	80687252	80687751	+	0	NA	Intergenic	Intergenic	139704	NR_015429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
5.90067-10	chr5	76238685	76239184	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-9746	NM_001882	1393	Hs.115617	NM_001882	ENSG00000145708	CRHBP	CRF-BP|CRFBP	corticotropin releasing hormone binding protein	protein-coding
8.18156-4	chr2	225286553	225287052	+	0	NA	Intergenic	Intergenic	-20091	NM_001122779	79843	Hs.147585	NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
4.47332-3	chr4	175443333	175443832	+	0	NA	exon (NM_001145816, exon 1 of 6)	exon (NM_001145816, exon 1 of 6)	462	NM_001256301	3248	Hs.596913	NM_000860	ENSG00000164120	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	hydroxyprostaglandin dehydrogenase 15-(NAD)	protein-coding
3.58526-13	chr11	15729488	15729987	+	0	NA	Intergenic	Intergenic	64306	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
0.589858-10	chr5	8456845	8457344	+	0	NA	promoter-TSS (NR_039989)	promoter-TSS (NR_039989)	583	NR_039984	729506	Hs.566412	NR_039984	ENSG00000245729	LOC729506	-	uncharacterized LOC729506	ncRNA
7.30487-2	chr8	140035280	140035779	+	0	NA	Intergenic	Intergenic	-109280	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
6.40165-3	chr1	100301826	100302325	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13565	NM_000642	178	Hs.904	NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
15.2433-4	chr18	55113455	55113954	+	0	NA	intron (NM_004852, intron 1 of 1)	intron (NM_004852, intron 1 of 1)	10787	NM_004852	9480	Hs.194725	NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
1.34304-5	chr4	53578883	53579382	+	0	NA	promoter-TSS (NR_003016)	promoter-TSS (NR_003016)	283	NR_039651	100616436		NR_039651	ENSG00000264585	MIR4449	-	microRNA 4449	ncRNA
0.496351-59	chr1	182326975	182327474	+	0	NA	Intergenic	Intergenic	33315	NM_001033056	2752	Hs.132016	NM_002065	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
6.79854-2	chr8	37888774	37889273	+	0	NA	intron (NM_004095, intron 1 of 2)	intron (NM_004095, intron 1 of 2)	1003	NM_004095	1978	Hs.411641	NM_004095	ENSG00000187840	EIF4EBP1	4E-BP1|4EBP1|BP-1|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
0.594835-21	chr6	14501474	14501973	+	0	NA	Intergenic	Intergenic	-216038	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
7.37549-3	chr12	131060770	131061269	+	0	NA	Intergenic	Intergenic	-58609	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
1.07349-6	chr9	21294194	21294693	+	0	NA	Intergenic	Intergenic	10869	NM_002169	3442	Hs.37113	NM_002169	ENSG00000147873	IFNA5	IFN-alpha-5|IFN-alphaG|INA5|INFA5|leIF G	interferon alpha 5	protein-coding
2.76544-13	chr1	19354491	19354990	+	0	NA	Intergenic	Intergenic	-71914	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
0.268721-27	chr2	162480666	162481165	+	0	NA	promoter-TSS (NM_001178015)	promoter-TSS (NM_001178015)	70	NM_022058	57282	Hs.333958	NM_022058	ENSG00000144290	SLC4A10	NBCn2|NCBE	solute carrier family 4 member 10	protein-coding
8.18156	chr12	8380001	8380500	+	0	NA	promoter-TSS (NM_018088)	promoter-TSS (NM_018088)	-36	NM_018088	55138	Hs.196086	NM_018088	ENSG00000171847	FAM90A1	-	family with sequence similarity 90 member A1	protein-coding
0.79355-19	chr14	25148039	25148538	+	0	NA	Intergenic	Intergenic	-44813	NM_004131	3002	Hs.1051	NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
0.0348833-18	chr1	77533625	77534124	+	0	NA	TTS (NM_001320273)	TTS (NM_001320273)	8046	NR_106978	102466995		NR_106978	ENSG00000276081	MIR7156	hsa-mir-7156	microRNA 7156	ncRNA
3.9794-19	chr11	88071387	88071886	+	0	NA	promoter-TSS (NM_001814)	promoter-TSS (NM_001814)	-681	NM_001114173	1075	Hs.128065	NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
2.28413-9	chr13	73716103	73716602	+	0	NA	Intergenic	Intergenic	83422	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
21.512-2	chr2	205912102	205912601	+	0	NA	exon (NM_001302769, exon 4 of 23)	exon (NM_001302769, exon 4 of 23)	501835	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
0.0305075-55	chr2	11816662	11817161	+	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	-794	NM_001261428	23175	Hs.467740	NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
7.87812	chr2	203788315	203788814	+	0	NA	intron (NM_001282912, intron 2 of 13)	L1PB|LINE|L1	11106	NM_001322428	79800	Hs.444982	NM_024744	ENSG00000138380	CARF	ALS2CR8|NYD-SP24	calcium responsive transcription factor	protein-coding
0.15923-24	chr20	17506204	17506703	+	0	NA	intron (NM_001278608, intron 3 of 9)	MLT1J|LTR|ERVL-MaLR	5561	NM_001195	631	Hs.129702	NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
0.15923-7	chr5	116349087	116349586	+	0	NA	Intergenic	L1PA13|LINE|L1	-251431	NR_104678	102467223	Hs.570916	NR_104678		LOC102467223	-	uncharacterized LOC102467223	ncRNA
6.96804	chr20	48808669	48809168	+	0	NA	promoter-TSS (NR_125739)	promoter-TSS (NR_125739)	-312	NR_125739	101927559	Hs.442486	NR_125739	ENSG00000277449	CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
1.19758-10	chr17	45804875	45805374	+	0	NA	Intergenic	Intergenic	-5486	NM_013351	30009	Hs.272409	NM_013351	ENSG00000073861	TBX21	T-PET|T-bet|TBET|TBLYM	T-box 21	protein-coding
0.0833099-2	chr20	62694158	62694657	+	0	NA	5' UTR (NM_003195, exon 1 of 10)	5' UTR (NM_003195, exon 1 of 10)	397	NM_003195	6919	Hs.505004	NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
2.71646-8	chr3	32148267	32148766	+	0	NA	intron (NM_015141, intron 1 of 7)	CpG	513	NM_015141	23171	Hs.82432	NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1-like	protein-coding
0.254883-26	chr3	105085343	105086317	+	0	NA	5' UTR (NM_001243283, exon 1 of 3)	5' UTR (NM_001243283, exon 1 of 3)	273	NM_001243281	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
3.06273-4	chr15	99339145	99339644	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	11739	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
6.73664-15	chr16	85210247	85210746	+	0	NA	Intergenic	Intergenic	39740	NR_033984	400548	Hs.592054	NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
4.15669-4	chr7	32793903	32794402	+	0	NA	Intergenic	SVA_B|Other|Other	-3746	NR_036501	401321	Hs.627604	NR_036501		LINC00997	-	long intergenic non-protein coding RNA 997	ncRNA
2.35077	chr5	92298414	92298913	+	0	NA	Intergenic	Intergenic	608386	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
6.34512-16	chr9	6006796	6007295	+	0	NA	promoter-TSS (NR_039811)	promoter-TSS (NR_039811)	-781	NR_039811	100616288		NR_039811	ENSG00000263575	MIR4665	mir-4665	microRNA 4665	ncRNA
1.36083-2	chr2	197379716	197380215	+	0	NA	intron (NM_020760, intron 1 of 28)	MER52A|LTR|ERV1	77370	NM_020760	57520	Hs.654742	NM_020760	ENSG00000138411	HECW2	NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
0.296531-99	chr1	40885223	40885722	+	0	NA	intron (NM_001198978, intron 9 of 9)	L1MC4|LINE|L1	23000	NM_001198980	64744	Hs.15200	NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
9.54677-4	chr9	74397970	74398469	+	0	NA	Intergenic	Intergenic	-14419	NM_001135820	23670	Hs.494146	NM_013390	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
0.447935-13	chr8	135020261	135020760	+	0	NA	Intergenic	Intergenic	121771	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
22.8567-5	chr5	14238353	14238852	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	94791	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
20.1011-5	chr9	82174580	82175079	+	0	NA	Intergenic	Intergenic	-11859	NM_007005	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
9.0309-8	chr1	201627709	201628208	+	0	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	10508	NM_020443	89796	Hs.585374	NM_020443	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
0.0568285-14	chr6	26217087	26217586	+	0	NA	promoter-TSS (NM_003518)	promoter-TSS (NM_003518)	188	NM_021052	3012	Hs.121017	NM_021052	ENSG00000277075	HIST1H2AE	H2A.1|H2A.2|H2A/a|H2AFA	histone cluster 1 H2A family member e	protein-coding
1.78486-9	chr4	154386694	154387193	+	0	NA	promoter-TSS (NM_001131007)	promoter-TSS (NM_001131007)	-555	NM_015196	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
2.18963-33	chrX	152933261	152933760	+	0	NA	Intergenic	Intergenic	5233	NM_001135740	139728	Hs.436667	NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
0.856568-12	chr17	19551802	19552301	+	0	NA	promoter-TSS (NM_000382)	promoter-TSS (NM_000382)	-13	NM_001031806	224	Hs.499886	NM_000382	ENSG00000072210	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family member A2	protein-coding
13.1336-5	chr10	25162289	25162788	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	79035	NM_001282786	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
2.80669-8	chr5	140011543	140012042	+	0	NA	exon (NM_001174104, exon 3 of 3)	exon (NM_001174104, exon 3 of 3)	1243	NM_000591	929	Hs.163867	NM_000591	ENSG00000170458	CD14	-	CD14 molecule	protein-coding
1.94499-11	chr4	48294892	48295391	+	0	NA	Intergenic	SVA_C|Other|Other	-23327	NM_003215	7006	Hs.479670	NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
28.0134	chr7	127353777	127354276	+	0	NA	intron (NM_014390, intron 9 of 23)	intron (NM_014390, intron 9 of 23)	61983	NM_014390	27044	Hs.122523	NM_014390	ENSG00000197157	SND1	TDRD11|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
1.37869-50	chr1	64971889	64972388	+	0	NA	5' UTR (NM_001293274, exon 1 of 26)	5' UTR (NM_001293274, exon 1 of 26)	541	NM_001293274	57685	Hs.443891	NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
22.8567-2	chr8	106613223	106613722	+	0	NA	intron (NM_012082, intron 4 of 7)	intron (NM_012082, intron 4 of 7)	282325	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
4.7237-5	chr11	45921182	45921681	+	0	NA	intron (NM_005456, intron 2 of 11)	CpG	7402	NM_001080446	143678	Hs.193741	NM_001080446	ENSG00000234776	C11orf94	-	chromosome 11 open reading frame 94	protein-coding
7.61954-23	chr7	135027597	135028096	+	0	NA	Intergenic	Intergenic	111115	NM_182489	346673	Hs.592279	NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
0.649968-23	chr16	4713111	4713897	+	0	NA	intron (NM_001142291, intron 5 of 15)	L1MB8|LINE|L1	-7815	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
0.362122-15	chr20	48625483	48625982	+	0	NA	Intergenic	AluJb|SINE|Alu	26219	NM_005985	6615	Hs.48029	NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
3.01899-20	chr6	35888645	35889144	+	0	NA	promoter-TSS (NR_034069)	promoter-TSS (NR_034069)	63	NM_003137	6732	Hs.443861	NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
26.517	chr8	107642660	107643159	+	0	NA	intron (NM_001198532, intron 2 of 15)	intron (NM_001198532, intron 2 of 15)	-27127	NM_181354	55074	Hs.127286	NM_018002	ENSG00000164830	OXR1	Nbla00307|TLDC3	oxidation resistance 1	protein-coding
1.11821-11	chr9	110250556	110251524	+	0	NA	intron (NM_004235, intron 2 of 4)	CpG	961	NM_001314052	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
1.12946-21	chr11	57227212	57227711	+	0	NA	promoter-TSS (NM_178570)	promoter-TSS (NM_178570)	-549	NM_178570	349667	Hs.502618	NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor-like 2	protein-coding
1.15771-12	chr7	139476043	139476542	+	0	NA	intron (NM_001113239, intron 1 of 14)	intron (NM_001113239, intron 1 of 14)	1401	NM_022740	28996	Hs.731417	NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
2.00659-7	chr11	86665725	86666224	+	0	NA	promoter-TSS (NR_038905)	promoter-TSS (NR_038905)	466	NM_012193	8322	Hs.591968	NM_012193	ENSG00000174804	FZD4	CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4	frizzled class receptor 4	protein-coding
0.0788851	chr1	19229118	19229617	+	0	NA	promoter-TSS (NM_170726)	promoter-TSS (NM_170726)	-74	NM_001319218	8659	Hs.77448	NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
0.888424-37	chr2	109679756	109680255	+	0	NA	Intergenic	Intergenic	-65992	NM_001099289	344558	Hs.171244	NM_001099289	ENSG00000172985	SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
1.30182-4	chr6	88875757	88876256	+	0	NA	promoter-TSS (NM_001160259)	promoter-TSS (NM_001160259)	-239	NM_001160259	1268	Hs.75110	NM_016083	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1	protein-coding
1.07905-5	chr4	184427192	184427691	+	0	NA	exon (NM_001291959, exon 1 of 2)	exon (NM_001291959, exon 1 of 2)	206	NM_001291959	3622	Hs.107153	NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
10.9745-2	chr9	92292664	92293163	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	38215	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
0.809219-16	chr5	115776875	115777374	+	0	NA	Intergenic	Intergenic	-6070	NR_109879	101927233	Hs.732850	NR_109879	ENSG00000248445	SEMA6A-AS1	CTB-118N6.3	SEMA6A antisense RNA 1	ncRNA
3.12471-13	chr4	71704833	71705332	+	0	NA	5' UTR (NM_001098477, exon 1 of 10)	5' UTR (NM_001098477, exon 1 of 10)	138	NM_001098477	2926	Hs.309763	NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
4.67246-4	chr1	8937938	8938437	+	0	NA	promoter-TSS (NR_038351)	promoter-TSS (NR_038351)	-707	NR_038351	100505975	Hs.429843	NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
14.1005-2	chr15	36896096	36896595	+	0	NA	intron (NM_001290232, intron 1 of 10)	intron (NM_001290232, intron 1 of 10)	9275	NM_032499	84529	Hs.48348	NM_032499	ENSG00000186073	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding
2.66001-9	chr2	179884877	179885376	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	29660	NM_001316745	285025	Hs.324341	NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
0.0877392-34	chr1	119683061	119683560	+	0	NA	promoter-TSS (NM_015836)	promoter-TSS (NM_015836)	-15	NM_201263	10352	Hs.523506	NM_015836	ENSG00000116874	WARS2	TrpRS	tryptophanyl tRNA synthetase 2, mitochondrial	protein-coding
10.9963-3	chr9	16417030	16417529	+	0	NA	3' UTR (NM_017637, exon 7 of 7)	3' UTR (NM_017637, exon 7 of 7)	-140968	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
9.17215-3	chr22	27786407	27786906	+	0	NA	Intergenic	Intergenic	80044	NR_134581	100507657	Hs.537371	NR_134581	ENSG00000226741	LOC100507657	-	uncharacterized LOC100507657	ncRNA
13.0627-2	chr4	99850158	99850657	+	0	NA	promoter-TSS (NM_001130678)	promoter-TSS (NM_001130678)	-164	NM_001130678	1977	Hs.13211	NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
0.0612309-27	chr11	34937892	34938391	+	0	NA	promoter-TSS (NM_015957)	promoter-TSS (NM_015957)	-183	NM_015957	51074	Hs.447794	NM_015957	ENSG00000149089	APIP	APIP2|CGI-29|CGI29|MMRP19|hAPIP	APAF1 interacting protein	protein-coding
26.4975-4	chr9	117021871	117022370	+	0	NA	intron (NM_032888, intron 28 of 60)	MIRb|SINE|MIR	50406	NR_030255	619556		NR_030255	ENSG00000207726	MIR455	MIRN455|hsa-mir-455|mir-455	microRNA 455	ncRNA
0.979971-7	chr1	144311402	144311901	+	0	NA	intron (NR_024510, intron 1 of 1)	CpG	29108	NR_024510	728855	Hs.456578	NR_024510		LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA
0.824945-5	chr9	70917909	70918408	+	0	NA	exon (NM_199135, exon 1 of 1)	exon (NM_199135, exon 1 of 1)	375	NM_199135	286380	Hs.449471	NM_199135	ENSG00000187559	FOXD4L3	FOXD4L2|FOXD6	forkhead box D4-like 3	protein-coding
0.070049-72	chr3	108633789	108634288	+	0	NA	intron (NM_005459, intron 3 of 3)	intron (NM_005459, intron 3 of 3)	38639	NM_005459	9626	Hs.233363	NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
0.649968-3	chr6	14986581	14987080	+	0	NA	Intergenic	MER50|LTR|ERV1	-259376	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
4.47332-6	chr8	67524865	67525788	+	0	NA	5' UTR (NM_001080416, exon 1 of 16)	5' UTR (NM_001080416, exon 1 of 16)	158	NM_001144755	4603	Hs.445898	NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
1.15771-30	chr12	122231929	122232428	+	0	NA	promoter-TSS (NM_019034)	promoter-TSS (NM_019034)	-584	NM_019034	54509	Hs.707579	NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
17.7211	chr8	58038060	58038559	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-92526	NR_038235	100507651	Hs.371831	NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
1.86419-16	chr22	34316805	34317304	+	0	NA	promoter-TSS (NM_133642)	promoter-TSS (NM_133642)	-638	NM_133642	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
1.42065-14	chr15	40383927	40384426	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	14111	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
6.05548-9	chr7	20826766	20827265	+	0	NA	promoter-TSS (NM_182700)	promoter-TSS (NM_182700)	-507	NM_182700	221833	Hs.195922	NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
2.32844-4	chr17	34965155	34965654	+	0	NA	TTS (NM_024864)	TTS (NM_024864)	7379	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
0.0305075-41	chr16	56261047	56261546	+	0	NA	intron (NM_020988, intron 2 of 8)	intron (NM_020988, intron 2 of 8)	-18136	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
9.1364-14	chr10	74114624	74115123	+	0	NA	promoter-TSS (NM_001002762)	promoter-TSS (NM_001002762)	34	NM_017626	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
26.3078	chr1	223421798	223422297	+	0	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	-105423	NM_003268	7100	Hs.604542	NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
12.3582-2	chr4	2926258	2926757	+	0	NA	intron (NM_001286645, intron 15 of 17)	intron (NM_001286645, intron 15 of 17)	9457	NM_001120	10227	Hs.632581	NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
0.172766-8	chr7	151573180	151573994	+	0	NA	promoter-TSS (NR_038926)	promoter-TSS (NR_038926)	-540	NR_038926	100505483	Hs.649054	NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
0.25028-19	chr22	41633501	41634000	+	0	NA	exon (NM_138481, exon 3 of 6)	exon (NM_138481, exon 3 of 6)	3185	NM_138481	150356	Hs.344488	NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
0.510982-14	chr21	38445995	38446494	+	0	NA	promoter-TSS (NM_001320480)	promoter-TSS (NM_001320480)	760	NM_001320703	7267	Hs.368214	NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
3.8405-21	chr3	160474047	160474546	+	0	NA	exon (NM_139245, exon 1 of 4)	exon (NM_139245, exon 1 of 4)	304	NM_139245	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
0.123337-51	chr12	99092533	99093032	+	0	NA	intron (NM_001160, intron 16 of 25)	intron (NM_001160, intron 16 of 25)	53704	NM_181869	317	Hs.552567	NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
11.7522	chr18	34236094	34236593	+	0	NA	intron (NM_001281740, intron 13 of 28)	intron (NM_001281740, intron 13 of 28)	7038	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
2.60428-12	chr14	81902390	81902889	+	0	NA	Intergenic	CpG	-8891	NM_001256430	85439	Hs.14248	NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
11.8842-2	chr21	36599422	36599921	+	0	NA	Intergenic	Intergenic	-178076	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
4.21361-7	chr7	50849960	50850459	+	0	NA	intron (NM_001001555, intron 1 of 16)	CpG	10950	NM_001001555	2887	Hs.164060	NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
11.3194	chr15	58726299	58726798	+	0	NA	TTS (NR_120338)	TTS (NR_120338)	2373	NM_000236	3990	Hs.654472	NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
11.4448	chr16	70517291	70517790	+	0	NA	intron (NM_015386, intron 14 of 18)	intron (NM_015386, intron 14 of 18)	29042	NM_145059	197258	Hs.7907	NM_145059	ENSG00000157353	FUK	1110046B12Rik	fucokinase	protein-coding
2.78189-2	chr18	71216441	71216940	+	0	NA	Intergenic	Intergenic	224514	NR_038340	100505817	Hs.197042	NR_038340	ENSG00000261780	LOC100505817	-	uncharacterized LOC100505817	ncRNA
21.5614-2	chr6	107513956	107514455	+	0	NA	intron (NM_020381, intron 7 of 7)	intron (NM_020381, intron 7 of 7)	-78569	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
12.5806	chr13	99058005	99058504	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	116125	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
2.25483-4	chr5	158122485	158122984	+	0	NA	TTS (NM_001324109)	TTS (NM_001324109)	-285953	NR_109888	101927697	Hs.483960	NR_109888	ENSG00000276778	LOC101927697	-	uncharacterized LOC101927697	ncRNA
0.00434512-16	chr17	48217172	48217671	+	0	NA	intron (NM_032595, intron 7 of 11)	intron (NM_032595, intron 7 of 11)	-10175	NM_001257359	201191	Hs.567769	NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
1.86419-21	chr14	24657361	24658323	+	0	NA	TTS (NM_001289006)	TTS (NM_001289006)	282	NM_024658	79711	Hs.411865	NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
0.48177-8	chr20	26188698	26189197	+	0	NA	promoter-TSS (NR_030386)	promoter-TSS (NR_030386)	-33	NR_030386	724033		NR_030386	ENSG00000227195	MIR663A	MIR663|MIRN663|hsa-mir-663|hsa-mir-663a|mir-663a	microRNA 663a	ncRNA
2.19683-9	chr10	79002792	79003291	+	0	NA	intron (NM_001322838, intron 3 of 29)	intron (NM_001322838, intron 3 of 29)	102452	NR_120654	101929310	Hs.666457	NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
1.22629-4	chr19	48972106	48972605	+	0	NA	promoter-TSS (NM_004228)	promoter-TSS (NM_004228)	-110	NM_017457	9266	Hs.144011	NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
3.21482	chr6	37544936	37545435	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-21987	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
5.22879-27	chr5	140900814	140901313	+	0	NA	intron (NM_001314007, intron 27 of 28)	intron (NM_001314007, intron 27 of 28)	32255	NM_018929	56097	Hs.368160	NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
1.22629-32	chr1	111609053	111609552	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-72703	NR_138485	10390	Hs.363572	NM_006090	ENSG00000134255	CEPT1	-	choline/ethanolamine phosphotransferase 1	protein-coding
14.3771-8	chr1	48347417	48347916	+	0	NA	intron (NM_001194986, intron 2 of 6)	intron (NM_001194986, intron 2 of 6)	114896	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
4.42493-4	chr4	150621131	150621630	+	0	NA	Intergenic	Intergenic	-378046	NM_001040261	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
17.0553	chr2	205230502	205231001	+	0	NA	Intergenic	Intergenic	-179765	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
17.3993-6	chr1	170588325	170588824	+	0	NA	Intergenic	Intergenic	-44739	NM_006902	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
2.51812	chr20	1447270	1447769	+	0	NA	non-coding (NR_038164, exon 1 of 8)	non-coding (NR_038164, exon 1 of 8)	818	NM_018839	55968	Hs.12865	NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
3.40084-17	chr11	46867320	46867819	+	0	NA	promoter-TSS (NR_038909)	promoter-TSS (NR_038909)	290	NM_001008938	9793	Hs.201253	NM_014756	ENSG00000175216	CKAP5	CHTOG|MSPS|TOG|TOGp|ch-TOG	cytoskeleton associated protein 5	protein-coding
0.579919-15	chr8	27449723	27450374	+	0	NA	Intergenic	CpG	18220	NR_106902	102465508		NR_106902	ENSG00000120885	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
3.45823-6	chr15	78707669	78708168	+	0	NA	Intergenic	Intergenic	-22600	NM_001320941	3658	Hs.436031	NM_004136	ENSG00000136381	IREB2	ACO3|IRP2|IRP2AD	iron responsive element binding protein 2	protein-coding
2.66001-19	chr13	42622846	42623345	+	0	NA	exon (NM_001204504, exon 2 of 30)	exon (NM_001204504, exon 2 of 30)	251	NM_152910	160851	Hs.630380	NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
4.81486-9	chr1	42799905	42800404	+	0	NA	intron (NM_001198851, intron 1 of 14)	intron (NM_001198851, intron 1 of 14)	482	NM_001198851	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
1.58641-5	chrX	10565820	10566319	+	0	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	-8086	NM_001347733	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
3.7059-5	chr10	104678905	104679404	+	0	NA	exon (NM_199077, exon 1 of 2)	exon (NM_199077, exon 1 of 2)	1079	NM_199076	54805	Hs.643509	NM_017649	ENSG00000148842	CNNM2	ACDP2|HOMG6|HOMGSMR	cyclin and CBS domain divalent metal cation transport mediator 2	protein-coding
1.49354-5	chr2	111072436	111072935	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	30255	NR_039941	100616123		NR_039941	ENSG00000264979	MIR4436B1	MIR4436B|hsa-mir-4436b-1	microRNA 4436b-1	ncRNA
0.604807-2	chr19	54694801	54695300	+	0	NA	promoter-TSS (NM_001077446)	promoter-TSS (NM_001077446)	-15	NM_001077446	79042	Hs.15580	NM_024075	ENSG00000170892	TSEN34	LENG5|PCH2C|SEN34|SEN34L	tRNA splicing endonuclease subunit 34	protein-coding
23.5853-4	chr2	231756144	231756643	+	0	NA	intron (NR_038238, intron 1 of 3)	intron (NR_038238, intron 1 of 3)	5132	NR_038238	151484	Hs.559309	NR_038238	ENSG00000232520	LOC151484	-	uncharacterized LOC151484	ncRNA
1.51195-29	chr4	177536076	177536575	+	0	NA	Intergenic	Intergenic	177574	NM_005429	7424	Hs.435215	NM_005429	ENSG00000150630	VEGFC	Flt4-L|LMPH1D|VRP	vascular endothelial growth factor C	protein-coding
4.47332-2	chr15	92991663	92992162	+	0	NA	intron (NM_001330416, intron 4 of 4)	L3|LINE|CR1	22864	NR_126501	104613533	Hs.97584	NR_126501	ENSG00000259170	LOC104613533	-	uncharacterized LOC104613533	ncRNA
2.58848	chr5	116959057	116959556	+	0	NA	Intergenic	Intergenic	-106750	NR_104997	102467224	Hs.134230	NR_104997		LINC02147	-	long intergenic non-protein coding RNA 2147	ncRNA
0.91515	chrUn_gl000225	138917	139416	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
3.01899-16	chr12	46662617	46663116	+	0	NA	5' UTR (NM_001278388, exon 1 of 16)	5' UTR (NM_001278388, exon 1 of 16)	342	NM_001077484	81539	Hs.533770	NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
0.540393-37	chr13	102748778	102749277	+	0	NA	intron (NM_001321945, intron 2 of 5)	MIRb|SINE|MIR	-50673	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA
1.70053-21	chrX	70585601	70586100	+	0	NA	promoter-TSS (NM_004606)	promoter-TSS (NM_004606)	-239	NR_104388	6872	Hs.158560	NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP	TATA-box binding protein associated factor 1	protein-coding
1.9044-12	chr6	90143474	90143973	+	0	NA	intron (NM_014942, intron 1 of 15)	intron (NM_014942, intron 1 of 15)	826	NM_014942	22881	Hs.702213	NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
0.0436481-2	chr21	18884902	18885401	+	0	NA	promoter-TSS (NM_001207064)	promoter-TSS (NM_001207064)	-73	NM_001207064	1525	Hs.627078	NM_001338	ENSG00000154639	CXADR	CAR|CAR4/6|HCAR	coxsackie virus and adenovirus receptor	protein-coding
0.291884-39	chr6	159125142	159125641	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	40956	NM_001318745	94120	Hs.436977	NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
0.0480371-4	chr10	105668030	105668529	+	0	NA	intron (NM_024928, intron 3 of 9)	intron (NM_024928, intron 3 of 9)	9766	NM_024928	79991	Hs.62314	NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1, CST complex subunit	protein-coding
0.118872-37	chr2	59431130	59431629	+	0	NA	Intergenic	Intergenic	-13464	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
14.1567	chr8	34503642	34504141	+	0	NA	Intergenic	Intergenic	-137548	NR_125746	103689844	Hs.590682	NR_125746	ENSG00000254344	LINC01288	TCONS_00014671	long intergenic non-protein coding RNA 1288	ncRNA
0.070049-41	chr3	185140451	185140950	+	0	NA	intron (NM_004721, intron 1 of 13)	MER1A|DNA|hAT-Charlie	59864	NM_004721	9175	Hs.591306	NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
1.31944-11	chr10	124802849	124803348	+	0	NA	intron (NM_001330174, intron 5 of 9)	intron (NM_001330174, intron 5 of 9)	34669	NM_001330174	36	Hs.81934	NM_001609	ENSG00000196177	ACADSB	2-MEBCAD|ACAD7|SBCAD	acyl-CoA dehydrogenase, short/branched chain	protein-coding
10.5453-2	chr6	81041639	81042138	+	0	NA	intron (NR_134945, intron 10 of 10)	intron (NR_134945, intron 10 of 10)	225561	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
3.06273	chr8	30103456	30103955	+	0	NA	Intergenic	SVA_E|Other|Other	89892	NM_006571	10671	Hs.158427	NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
1.22629-11	chr8	102703739	102704238	+	0	NA	intron (NM_001040624, intron 7 of 7)	intron (NM_001040624, intron 7 of 7)	99451	NM_032041	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
1.42065-11	chr20	44065437	44065936	+	0	NA	Intergenic	CpG	11536	NR_106870	102465487		NR_106870	ENSG00000273555	MIR6812	hsa-mir-6812	microRNA 6812	ncRNA
4.9485-4	chr2	11059871	11060370	+	0	NA	Intergenic	Intergenic	8057	NM_002236	3754	Hs.23735	NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
6.81937-2	chr7	158243374	158243873	+	0	NA	intron (NM_130842, intron 1 of 21)	L1ME3B|LINE|L1	81882	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
8.26814-18	chr9	117567861	117568360	+	0	NA	exon (NM_005118, exon 1 of 4)	exon (NM_005118, exon 1 of 4)	298	NM_005118	9966	Hs.23349	NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	tumor necrosis factor superfamily member 15	protein-coding
1.22629-15	chr10	111970759	111971519	+	0	NA	intron (NM_001008541, intron 1 of 4)	intron (NM_001008541, intron 1 of 4)	1150	NM_001008541	4601	Hs.602078	NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
0.141246-21	chr19	49617313	49617812	+	0	NA	promoter-TSS (NM_022165)	promoter-TSS (NM_022165)	-56	NM_022165	64130	Hs.221737	NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
0.268721-15	chr2	49417618	49418117	+	0	NA	Intergenic	Intergenic	-36201	NM_000145	2492	Hs.1428	NM_000145	ENSG00000170820	FSHR	FSHR1|FSHRO|LGR1|ODG1	follicle stimulating hormone receptor	protein-coding
0.783135-10	chr7	117854200	117854699	+	0	NA	Intergenic	CpG	-10263	NM_019644	56311	Hs.729340	NM_019644	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
1.10698-11	chr12	68602999	68603690	+	0	NA	intron (NM_018402, intron 3 of 4)	LTR14B|LTR|ERVK	16227	NM_018402	55801	Hs.272350	NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
0.00434512-10	chr8	145754264	145754763	+	0	NA	promoter-TSS (NM_001001795)	promoter-TSS (NM_001001795)	-55	NM_001001795	414919	Hs.105685	NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
0.0392635-20	chr12	9903246	9903745	+	0	NA	Intergenic	Intergenic	10002	NM_001781	969	Hs.208854	NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
0.296531-10	chr12	110117478	110117977	+	0	NA	Intergenic	Intergenic	-34460	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
3.52617-2	chr4	88343527	88344026	+	0	NA	promoter-TSS (NM_001248011)	promoter-TSS (NM_001248011)	27	NM_198038	53343	Hs.149500	NM_024047	ENSG00000170502	NUDT9	NUDT10	nudix hydrolase 9	protein-coding
1.35489-10	chr1	48964123	48964622	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-26492	NM_001286239	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
4.54693-7	chr7	128086397	128086896	+	0	NA	Intergenic	Intergenic	-9238	NM_013332	29923	Hs.706124	NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
1.43271-22	chr16	66876583	66877082	+	0	NA	Intergenic	Intergenic	-1450	NM_005182	766	Hs.37014	NM_005182	ENSG00000168748	CA7	CAVII	carbonic anhydrase 7	protein-coding
2.18963-23	chr8	140835196	140835695	+	0	NA	intron (NM_031466, intron 21 of 22)	intron (NM_031466, intron 21 of 22)	-120146	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
0.0261362-54	chr20	62669842	62670341	+	0	NA	non-coding (NR_027686, exon 4 of 4)	non-coding (NR_027686, exon 4 of 4)	4394	NR_027687	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	protein-coding
2.47184-14	chr22	50344828	50345327	+	0	NA	Intergenic	Intergenic	-9066	NM_001001852	415116	Hs.530381	NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
13.2057-4	chr18	68101006	68101505	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-49428	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
5.05845-14	chr12	25937905	25938404	+	0	NA	Intergenic	MIRc|SINE|MIR	88858	NR_036188	100422897		NR_036188	ENSG00000283603	MIR4302	-	microRNA 4302	ncRNA
0.675262-9	chr3	14361013	14361512	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	32806	NR_110135	101927565	Hs.306905	NR_110135	ENSG00000251576	LINC01267	-	long intergenic non-protein coding RNA 1267	ncRNA
12.1112	chr18	74695102	74695601	+	0	NA	intron (NM_002385, intron 5 of 5)	intron (NM_002385, intron 5 of 5)	33704	NM_001025081	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
2.36572-18	chr9	117261678	117262177	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	3568	NM_001083885	25861	Hs.93836	NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
0.136762	chr19	56015314	56015813	+	0	NA	3' UTR (NM_001195267, exon 13 of 13)	3' UTR (NM_001195267, exon 13 of 13)	15693	NM_001195267	284297	Hs.554182	NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
0.824945-8	chr12	90100797	90101296	+	0	NA	Intergenic	Intergenic	-1686	NR_028138	338758	Hs.601766	NR_028138	ENSG00000271614	ATP2B1-AS1	LINC00936	ATP2B1 antisense RNA 1	ncRNA
12.5885	chr6	77342992	77343491	+	0	NA	Intergenic	LTR1|LTR|ERV1	-560846	NM_001282368	3617	Hs.590893	NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding
6.9897	chr18	65184535	65185034	+	0	NA	promoter-TSS (NM_032160)	promoter-TSS (NM_032160)	-817	NM_032160	92126	Hs.124673	NM_032160	ENSG00000171451	DSEL	C18orf4	dermatan sulfate epimerase-like	protein-coding
0.599818-9	chr3	66492617	66493116	+	0	NA	intron (NM_015541, intron 3 of 18)	(GGA)n|Simple_repeat|Simple_repeat	57979	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
2.1254-21	chr18	44065791	44066290	+	0	NA	intron (NM_144612, intron 37 of 39)	L2a|LINE|L2	33009	NM_001173129	125336	Hs.345877	NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology domains 1	protein-coding
0.530567-11	chr16	34760427	34760926	+	0	NA	Intergenic	Intergenic	-19135	NR_034018	100130700	Hs.97712	NR_034018		TP53TG3HP	-	TP53 target 3 family member H, pseudogene	pseudo
1.30768-8	chr2	10972365	10972864	+	0	NA	promoter-TSS (NM_001282704)	promoter-TSS (NM_001282704)	-3	NM_001282704	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
2.00659-2	chr17	18584939	18585438	+	0	NA	intron (NM_001145045, intron 1 of 4)	intron (NM_001145045, intron 1 of 4)	384	NM_001145045	729288	Hs.534279	NM_001145045	ENSG00000249459	ZNF286B	ZNF286C|ZNF286L|ZNF590	zinc finger protein 286B	protein-coding
1.76526-13	chr1	203403131	203403630	+	0	NA	Intergenic	L2b|LINE|L2	-41503	NM_201348	5549	Hs.632481	NM_002725	ENSG00000188783	PRELP	MST161|MSTP161|SLRR2A	proline and arginine rich end leucine rich repeat protein	protein-coding
0.395292-4	chr17	60947830	60948329	+	0	NA	Intergenic	Intergenic	62216	NR_135634	101927877	Hs.434615	NR_135634	ENSG00000265000	LOC101927877	-	uncharacterized LOC101927877	ncRNA
1.53663-42	chr12	131117226	131117725	+	0	NA	Intergenic	Intergenic	-115065	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
0.423927-8	chr2	43446548	43447047	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	6948	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
5.21434-12	chr4	37604578	37605077	+	0	NA	intron (NM_001085399, intron 6 of 6)	intron (NM_001085399, intron 6 of 6)	18972	NM_018302	55286	Hs.107527	NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
57.2584-2	chr5	38424292	38424791	+	0	NA	intron (NM_152403, intron 12 of 21)	intron (NM_152403, intron 12 of 21)	20907	NM_182798	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
8.12479-10	chr2	129480056	129480555	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-141869	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19.9568-2	chr5	11878928	11879427	+	0	NA	intron (NR_109988, intron 1 of 21)	intron (NR_109988, intron 1 of 21)	24978	NR_109988	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
0.467237-17	chr13	96672319	96672818	+	0	NA	intron (NM_020121, intron 4 of 38)	intron (NM_020121, intron 4 of 38)	33168	NM_020121	55757	Hs.193226	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
2.54145	chr1	117027734	117028233	+	0	NA	Intergenic	Intergenic	-6535	NR_125973	101929023	Hs.668091	NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
7.18967-3	chr9	135989984	135990483	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	6404	NM_006266	5900	Hs.106185	NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
8.06875-8	chr14	39297338	39297837	+	0	NA	intron (NR_039982, intron 4 of 4)	AluJb|SINE|Alu	-54212	NR_135256	105370457	Hs.128254	NR_135256		LOC105370457	-	uncharacterized LOC105370457	ncRNA
0.496351-32	chr1	94182451	94182950	+	0	NA	intron (NM_001261408, intron 2 of 13)	MLT1H|LTR|ERVL-MaLR	-35306	NM_003567	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
6.30784-14	chr15	65615324	65615823	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-36392	NM_017851	54956	Hs.30634	NM_017851	ENSG00000138617	PARP16	ARTD15|C15orf30|pART15	poly(ADP-ribose) polymerase family member 16	protein-coding
17.3993-7	chr5	77652883	77653382	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-3195	NR_110885	9522	Hs.482587	NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
20.0349-2	chr2	120140845	120141344	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	15843	NM_001079863	1622	Hs.78888	NM_020548	ENSG00000155368	DBI	ACBD1|ACBP|CCK-RP|EP	diazepam binding inhibitor, acyl-CoA binding protein	protein-coding
1.92465-22	chr5	10301378	10301877	+	0	NA	intron (NM_138809, intron 1 of 5)	intron (NM_138809, intron 1 of 5)	6541	NM_138809	134147	Hs.192586	NM_138809	ENSG00000164237	CMBL	JS-1	carboxymethylenebutenolidase homolog	protein-coding
1.60522-12	chr2	1608827	1609326	+	0	NA	Intergenic	Intergenic	139243	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
0.540393-25	chr11	795893	796688	+	0	NA	promoter-TSS (NM_024698)	promoter-TSS (NM_024698)	-27	NM_024698	79751	Hs.99486	NM_024698	ENSG00000177542	SLC25A22	EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding
1.22053-24	chrX	54208716	54209215	+	0	NA	exon (NM_001300788, exon 1 of 14)	exon (NM_001300788, exon 1 of 14)	726	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
0.0788851-6	chr19	10981687	10982186	+	0	NA	promoter-TSS (NM_199141)	promoter-TSS (NM_199141)	-317	NM_199141	10498	Hs.323213	NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
4.49772-4	chr11	118481680	118482179	+	0	NA	intron (NM_001144758, intron 1 of 22)	intron (NM_001144758, intron 1 of 22)	3623	NM_001144758	23187	Hs.504062	NM_015157	ENSG00000019144	PHLDB1	LL5A	pleckstrin homology like domain family B member 1	protein-coding
2.20404	chr2	135676549	135677048	+	0	NA	promoter-TSS (NR_036549)	promoter-TSS (NR_036549)	406	NM_001241	905	Hs.744115	NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
3.23306-2	chr20	31116129	31116628	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	18616	NR_110619	101929698	Hs.638392	NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
4.55932-2	chr6	170224110	170224609	+	0	NA	Intergenic	L1PB1|LINE|L1	-25438	NR_026781	401288	Hs.556095	NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
30.7263-2	chr7	131529060	131529559	+	0	NA	Intergenic	Intergenic	-65670	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
6.23423-5	chr6	44224855	44225354	+	0	NA	promoter-TSS (NM_001286510)	promoter-TSS (NM_001286510)	-15	NM_001286512	347734	Hs.182885	NM_178148	ENSG00000157593	SLC35B2	PAPST1|SLL|UGTrel4	solute carrier family 35 member B2	protein-coding
0.909791-2	chr3	135044124	135044623	+	0	NA	Intergenic	Intergenic	530274	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
0.296531-28	chr15	101817430	101817929	+	0	NA	promoter-TSS (NM_018445)	promoter-TSS (NM_018445)	46	NM_018445	55829	Hs.32148	NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
0.177288-9	chr8	9008931	9009430	+	0	NA	promoter-TSS (NM_001201329)	promoter-TSS (NM_001201329)	-28	NM_001201329	79660	Hs.458513	NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
0.736576-4	chr15	45814748	45815247	+	0	NA	promoter-TSS (NM_013309)	promoter-TSS (NM_013309)	5	NM_013309	7782	Hs.162989	NM_013309	ENSG00000104154	SLC30A4	ZNT4|znT-4	solute carrier family 30 member 4	protein-coding
0.0524306-18	chr5	63985917	63986416	+	0	NA	promoter-TSS (NM_001164442)	promoter-TSS (NM_001164442)	31	NM_001164442	100132916	Hs.591776	NM_001164442	ENSG00000145642	FAM159B	-	family with sequence similarity 159 member B	protein-coding
16.0555-4	chr12	32417861	32418360	+	0	NA	intron (NM_001003398, intron 2 of 8)	L1MEc|LINE|L1	157925	NM_001003398	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
0.594835-13	chr2	236407196	236407695	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	4712	NM_014914	116987	Hs.435039	NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
0.15923-19	chr13	24462727	24463226	+	0	NA	promoter-TSS (NM_001135816)	promoter-TSS (NM_001135816)	-52	NM_001014442	542767	Hs.642624	NM_001014442		C1QTNF9B-AS1	PCOTH	C1QTNF9B antisense RNA 1	protein-coding
1.37869-9	chrX	118806238	118806737	+	0	NA	intron (NM_145800, intron 2 of 10)	intron (NM_145800, intron 2 of 10)	20846	NM_145799	23157	Hs.496666	NM_015129	ENSG00000125354	SEPT6	SEP2|SEPT2	septin 6	protein-coding
1.11259-9	chrX	57848148	57848647	+	0	NA	Intergenic	Intergenic	88670	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
0.893756-6	chr20	25842338	25842837	+	0	NA	Intergenic	SST1|Satellite|centr	-7930	NR_110001	101926935	Hs.737440	NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
1.34304-11	chr11	22897322	22897821	+	0	NA	Intergenic	Intergenic	-15599	NM_001195637	100500938	Hs.555029	NM_001195637	ENSG00000255359	CCDC179	-	coiled-coil domain containing 179	protein-coding
26.4975-7	chr11	132011303	132011802	+	0	NA	intron (NM_001144058, intron 1 of 7)	intron (NM_001144058, intron 1 of 7)	-142644	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
1.06238-11	chr19	58898005	58898504	+	0	NA	promoter-TSS (NM_001009)	promoter-TSS (NM_001009)	-29	NR_039910	100616168		NR_039910	ENSG00000266640	MIR4754	mir-4754	microRNA 4754	ncRNA
0.154727-15	chr2	28548970	28549469	+	0	NA	intron (NR_137438, intron 12 of 12)	intron (NR_137438, intron 12 of 12)	-15893	NR_038319	100505716	Hs.679092	NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
0.0392635-22	chr3	194722735	194723234	+	0	NA	Intergenic	Intergenic	-92333	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
2.66803-11	chr12	6933177	6933676	+	0	NA	exon (NM_019858, exon 2 of 5)	exon (NM_019858, exon 2 of 5)	2463	NM_019858	27239	Hs.631654	NM_014449	ENSG00000250510	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
18.9279-2	chr14	25476231	25476730	+	0	NA	intron (NM_014178, intron 1 of 5)	intron (NM_014178, intron 1 of 5)	41726	NM_001304477	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
1.25518-6	chr6	149068245	149068744	+	0	NA	5' UTR (NM_005715, exon 1 of 8)	5' UTR (NM_005715, exon 1 of 8)	223	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
0.472076-33	chr18	12308546	12309045	+	0	NA	intron (NM_001303526, intron 2 of 2)	CpG-11625	737	NM_001303525	84617	Hs.193491	NM_032525	ENSG00000176014	TUBB6	HsT1601|TUBB-5	tubulin beta 6 class V	protein-coding
3.08035-2	chr7	27183131	27183630	+	0	NA	promoter-TSS (NM_019102)	promoter-TSS (NM_019102)	-93	NM_019102	3202	Hs.655218	NM_019102	ENSG00000106004	HOXA5	HOX1|HOX1.3|HOX1C	homeobox A5	protein-coding
3.99027-25	chr2	85532951	85533450	+	0	NA	intron (NM_031283, intron 8 of 11)	intron (NM_031283, intron 8 of 11)	22219	NM_001206840	10618	Hs.593382	NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
0.222764-4	chr11	62104569	62105068	+	0	NA	promoter-TSS (NM_001083926)	promoter-TSS (NM_001083926)	44	NM_001083926	80150	Hs.535326	NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase like 1	protein-coding
4.82804-9	chr16	75681200	75681699	+	0	NA	promoter-TSS (NR_144545)	promoter-TSS (NR_144545)	136	NM_001130089	3735	Hs.3100	NM_005548	ENSG00000065427	KARS	CMTRIB|DFNB89|KARS1|KARS2|KRS	lysyl-tRNA synthetase	protein-coding
22.2475-3	chr11	66633833	66634332	+	0	NA	intron (NM_001040716, intron 10 of 22)	intron (NM_001040716, intron 10 of 22)	9206	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
7.52027-9	chr4	79700356	79700855	+	0	NA	intron (NM_198892, intron 1 of 15)	MER82|DNA|TcMar-Tigger	3073	NM_017593	55589	Hs.146551	NM_017593	ENSG00000138756	BMP2K	BIKE|HRIHFB2017	BMP2 inducible kinase	protein-coding
4.88117-6	chr7	138911234	138911733	+	0	NA	Intergenic	SVA_A|Other|Other	-4748	NM_173569	254048	Hs.153458	NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
1.04025-2	chr21	27012370	27012869	+	0	NA	intron (NM_021219, intron 1 of 9)	intron (NM_021219, intron 1 of 9)	1025	NM_001270408	58494	Hs.517227	NM_021219	ENSG00000154721	JAM2	C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM	junctional adhesion molecule 2	protein-coding
9.20819-3	chr4	157133960	157134459	+	0	NA	Intergenic	L1PA15|LINE|L1	-259161	NM_001334	1519	Hs.75262	NM_001334	ENSG00000256043	CTSO	CTSO1	cathepsin O	protein-coding
4.68521-8	chr20	17678767	17679266	+	0	NA	intron (NM_001159495, intron 1 of 2)	MSTB|LTR|ERVL-MaLR	-1577	NM_001014977	140836	Hs.115366	NM_178477	ENSG00000125888	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
2.35077-16	chr7	145813167	145813666	+	0	NA	promoter-TSS (NM_014141)	promoter-TSS (NM_014141)	-37	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
8.60121-6	chr14	33901578	33902077	+	0	NA	intron (NM_001164749, intron 4 of 11)	intron (NM_001164749, intron 4 of 11)	-276316	NR_132771	106635522		NR_132771		SNORA89	-	small nucleolar RNA, H/ACA box 89	snoRNA
0.952845-28	chr6	105774620	105775119	+	0	NA	intron (NM_002726, intron 9 of 14)	intron (NM_002726, intron 9 of 14)	76130	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
0.357404-13	chr8	70575924	70576423	+	0	NA	Intergenic	Intergenic	71038	NR_132437	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding
13.279-5	chr4	23882556	23883055	+	0	NA	5' UTR (NM_001330753, exon 1 of 12)	5' UTR (NM_001330753, exon 1 of 12)	110	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
3.7059-6	chr14	69273650	69274149	+	0	NA	Intergenic	Intergenic	-10939	NM_001244701	677	Hs.85155	NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
0.186345-6	chr12	1329740	1330239	+	0	NA	intron (NR_027946, intron 12 of 18)	intron (NR_027946, intron 12 of 18)	193075	NM_001301248	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
0.195421-8	chr11	44972195	44972694	+	0	NA	promoter-TSS (NM_001318389)	promoter-TSS (NM_001318389)	11	NM_001318390	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
6.34512-13	chr3	139493598	139494097	+	0	NA	Intergenic	Intergenic	-96955	NM_001320511	349565	Hs.208673	NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
2.13249-8	chr19	50370539	50371038	+	0	NA	promoter-TSS (NM_007254)	promoter-TSS (NM_007254)	34	NM_007254	11284	Hs.78016	NM_007254	ENSG00000039650	PNKP	AOA4|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
5.22879-25	chr2	45182735	45183234	+	0	NA	Intergenic	CpG	13947	NM_005413	6496	Hs.567336	NM_005413	ENSG00000138083	SIX3	HPE2	SIX homeobox 3	protein-coding
0.94744-12	chr21	38071212	38071711	+	0	NA	promoter-TSS (NM_009586)	promoter-TSS (NM_009586)	28	NM_005069	6493	Hs.146186	NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded family bHLH transcription factor 2	protein-coding
3.8405-8	chr9	130689708	130690207	+	0	NA	promoter-TSS (NM_173492)	promoter-TSS (NM_173492)	-187	NM_173492	138429	Hs.734928	NM_173492	ENSG00000167103	PIP5KL1	PIPKH|bA203J24.5	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
1.49967	chr2	160143474	160143973	+	0	NA	promoter-TSS (NM_001307994)	promoter-TSS (NM_001307994)	-413	NM_001307994	151525	Hs.20848	NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
1.92465-8	chr13	70681764	70682263	+	0	NA	5' UTR (NM_001286725, exon 1 of 10)	5' UTR (NM_001286725, exon 1 of 10)	612	NM_001286725	57626	Hs.508201	NM_020866	ENSG00000150361	KLHL1	MRP2	kelch like family member 1	protein-coding
0.291884-40	chrUn_gl000225	127677	128176	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1.6877-8	chr1	90868613	90869112	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	313932	NM_020063	343472	Hs.451956	NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
1.64944-3	chr12	685228	685727	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	10175	NR_134624	105369595	Hs.504422	NR_134624		LOC105369595	-	uncharacterized LOC105369595	ncRNA
18.3863-6	chr17	74444269	74444768	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	4770	NM_022066	63893	Hs.16130	NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
1.25518	chr12	48382072	48382571	+	0	NA	intron (NM_033150, intron 17 of 52)	intron (NM_033150, intron 17 of 52)	15964	NM_001844	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
13.0103-3	chr13	102106166	102106665	+	0	NA	exon (NM_004791, exon 2 of 11)	exon (NM_004791, exon 2 of 11)	1471	NM_001271755	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
0.273344-20	chr7	150145623	150146122	+	0	NA	TTS (NR_034033)	TTS (NR_034033)	-1846	NM_175571	155038	Hs.647121	NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
3.20572	chr18	31140577	31141076	+	0	NA	Intergenic	MER61C|LTR|ERV1	-17715	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
1.31944-7	chr2	54784844	54785343	+	0	NA	promoter-TSS (NM_178313)	promoter-TSS (NM_178313)	-438	NM_178313	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
3.00162	chr14	65170725	65171224	+	0	NA	promoter-TSS (NM_001308147)	promoter-TSS (NM_001308147)	-152	NM_001308147	26030	Hs.509637	NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
1.89096-4	chrUn_gl000211	102629	103128	+	0	NA	Intergenic	CpG	54375	NR_033856	644316	Hs.632789	NR_033856		FLJ43315	-	asparagine synthetase pseudogene	pseudo
15.9007-3	chr9	74977529	74978028	+	0	NA	intron (NM_001102421, intron 1 of 5)	intron (NM_001102421, intron 1 of 5)	1730	NM_001278244	7763	Hs.406096	NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
1.79799-19	chr11	12352756	12353255	+	0	NA	intron (NM_032867, intron 6 of 8)	intron (NM_032867, intron 6 of 8)	44558	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
5.24329-4	chr10	22614157	22614656	+	0	NA	intron (NM_005180, intron 1 of 9)	CpG	4267	NM_005180	648	Hs.380403	NM_005180	ENSG00000168283	BMI1	FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1	BMI1 proto-oncogene, polycomb ring finger	protein-coding
3.72634-7	chr12	97542631	97543130	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	241636	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
0.0524306-7	chrX	89831339	89831838	+	0	NA	Intergenic	MER50|LTR|ERV1	654648	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	TGFB induced factor homeobox 2 like, X-linked	protein-coding
0.530567-6	chr6	138610867	138611366	+	0	NA	intron (NM_020340, intron 18 of 33)	intron (NM_020340, intron 18 of 33)	-71489	NM_021635	59351	Hs.302016	NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
0.51587-6	chrX	151804275	151804774	+	0	NA	Intergenic	Intergenic	-2113	NM_018558	55879	Hs.283081	NM_018558	ENSG00000268089	GABRQ	THETA	gamma-aminobutyric acid type A receptor theta subunit	protein-coding
3.29754-5	chr9	127533571	127534070	+	0	NA	promoter-TSS (NM_001489)	promoter-TSS (NM_001489)	-231	NM_033334	2649	Hs.20131	NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
1.30182-2	chr8	109205914	109206413	+	0	NA	Intergenic	Intergenic	54796	NM_001568	3646	Hs.405590	NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
1.15771-33	chr7	116165608	116166107	+	0	NA	promoter-TSS (NM_001172897)	promoter-TSS (NM_001172897)	-490	NM_001172896	857	Hs.74034	NM_001753	ENSG00000105974	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1	protein-coding
4.78862	chr4	89923136	89923635	+	0	NA	intron (NM_014883, intron 3 of 23)	HAL1|LINE|L1	54961	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
60.4624-2	chr6	122966445	122966944	+	0	NA	intron (NM_032471, intron 2 of 3)	intron (NM_032471, intron 2 of 3)	-7180	NM_001270395	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
10.804-4	chrUn_gl000225	7346	7845	+	0	NA	NA	Intergenic	NA	NA								
48.6012-2	chr5	3428009	3428508	+	0	NA	intron (NR_033898, intron 2 of 4)	intron (NR_033898, intron 2 of 4)	75860	NR_104618	102467075	Hs.652949	NR_104618	ENSG00000250716	LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA
0.783135-8	chr4	175304160	175304659	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-40537	NR_036236	100423042		NR_036236	ENSG00000265846	MIR4276	-	microRNA 4276	ncRNA
2.49492-6	chr1	1709686	1710621	+	0	NA	promoter-TSS (NM_023018)	promoter-TSS (NM_023018)	144	NM_001198993	65220	Hs.654792	NM_023018	ENSG00000008130	NADK	dJ283E3.1	NAD kinase	protein-coding
0.287242-4	chr6	98585188	98585687	+	0	NA	Intergenic	Intergenic	113030	NR_031579	100302164		NR_031579	ENSG00000238367	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
3.30683-21	chr15	49170237	49170736	+	0	NA	exon (NM_014335, exon 1 of 1)	exon (NM_014335, exon 1 of 1)	196	NM_014335	23741	Hs.255973	NM_014335	ENSG00000255302	EID1	C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21	EP300 interacting inhibitor of differentiation 1	protein-coding
3.36299-13	chr7	122527349	122527848	+	0	NA	promoter-TSS (NM_017954)	promoter-TSS (NM_017954)	-785	NM_017954	93664	Hs.649459	NM_017954	ENSG00000081803	CADPS2	CAPS2	calcium dependent secretion activator 2	protein-coding
1.29596-19	chr1	26098158	26098657	+	0	NA	intron (NM_020379, intron 8 of 11)	intron (NM_020379, intron 8 of 11)	-28260	NM_020451	57190	Hs.323396	NM_020451	ENSG00000162430	SELENON	CFTD|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
7.35182-11	chr11	18656037	18656536	+	0	NA	promoter-TSS (NM_194285)	promoter-TSS (NM_194285)	-266	NM_194285	144108	Hs.738650	NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
5.01689-12	chr2	218853069	218853568	+	0	NA	intron (NR_135524, intron 3 of 3)	intron (NR_135524, intron 3 of 3)	9888	NR_135524	105373878	Hs.630709	NR_135524	ENSG00000223923	LOC105373878	-	uncharacterized LOC105373878	ncRNA
0.584886-3	chr5	98104385	98104884	+	0	NA	promoter-TSS (NM_001012761)	promoter-TSS (NM_001012761)	-365	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule family member b	protein-coding
10.7988-2	chr6	17868019	17868518	+	0	NA	intron (NM_022113, intron 4 of 38)	intron (NM_022113, intron 4 of 38)	119586	NM_001105568	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
3.85103-27	chr19	1875985	1876484	+	0	NA	TTS (NM_001130111)	TTS (NM_001130111)	9284	NM_031213	81926	Hs.465542	NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A	protein-coding
12.7246-2	chr17	70283687	70284186	+	0	NA	Intergenic	Intergenic	-55016	NR_135222	146795	Hs.651743	NR_135222	ENSG00000264026	LINC02003	-	long intergenic non-protein coding RNA 2003	ncRNA
5.08638-4	chr14	37445010	37445509	+	0	NA	intron (NM_030631, intron 1 of 9)	intron (NM_030631, intron 1 of 9)	-23663	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
14.0012-2	chr7	149569767	149570266	+	0	NA	promoter-TSS (NR_110612)	promoter-TSS (NR_110612)	-41	NR_110612	155066	Hs.556998	NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
1.9382-2	chr8	124459907	124460406	+	0	NA	intron (NR_133926, intron 6 of 6)	MLT1J1|LTR|ERVL-MaLR	31191	NM_001283027	55093	Hs.18029	NM_018024	ENSG00000156795	WDYHV1	C8orf32	WDYHV motif containing 1	protein-coding
4.81486-8	chr3	38500467	38501448	+	0	NA	intron (NM_001106, intron 1 of 10)	intron (NM_001106, intron 1 of 10)	-4646	NR_028389	100128640	Hs.570596	NR_028389	ENSG00000229589	ACVR2B-AS1	-	ACVR2B antisense RNA 1	ncRNA
1.67491-9	chr6	26402364	26402863	+	0	NA	5' UTR (NM_007048, exon 1 of 10)	5' UTR (NM_007048, exon 1 of 10)	148	NM_194441	11119	Hs.191510	NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
0.0788851-18	chr7	112753922	112754421	+	0	NA	Intergenic	L1MDa|LINE|L1	4466	NR_015442	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
1.42668-10	chr17	77041834	77042333	+	0	NA	intron (NM_198593, intron 2 of 3)	intron (NM_198593, intron 2 of 3)	11702	NM_198593	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
1.02923-11	chr10	134145040	134145539	+	0	NA	promoter-TSS (NM_001318878)	promoter-TSS (NM_001318878)	90	NM_001318882	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
17.8781-4	chr8	65829028	65829527	+	0	NA	Intergenic	Intergenic	-117929	NM_004820	9420	Hs.657330	NM_004820	ENSG00000172817	CYP7B1	CBAS3|CP7B|SPG5A	cytochrome P450 family 7 subfamily B member 1	protein-coding
0.245682-39	chrX	129194122	129195079	+	0	NA	Intergenic	CpG	49875	NM_001421	2000	Hs.271940	NM_001421	ENSG00000102034	ELF4	ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
4.29457	chr6	452675	453174	+	0	NA	Intergenic	Intergenic	61185	NR_046000	3662	Hs.401013	NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
16.3451-5	chr3	105245439	105245938	+	0	NA	intron (NM_001243280, intron 3 of 14)	intron (NM_001243280, intron 3 of 14)	160131	NM_001243281	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
0.385789-13	chr3	140082555	140083054	+	0	NA	intron (NM_022131, intron 2 of 16)	intron (NM_022131, intron 2 of 16)	144827	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
0.376307-3	chr10	104040253	104040752	+	0	NA	intron (NM_001199379, intron 3 of 39)	intron (NM_001199379, intron 3 of 39)	35247	NM_004193	8729	Hs.290243	NM_004193	ENSG00000107862	GBF1	ARF1GEF	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
0.177288-20	chr1	210001023	210001522	+	0	NA	promoter-TSS (NM_014388)	promoter-TSS (NM_014388)	-40	NM_014388	27042	Hs.194754	NM_014388	ENSG00000117597	DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding
1.49967-12	chr18	77866552	77867051	+	0	NA	promoter-TSS (NM_014913)	promoter-TSS (NM_014913)	-114	NM_014913	22850	Hs.131915	NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
1.56145-2	chr7	127716940	127717439	+	0	NA	intron (NM_014390, intron 17 of 23)	intron (NM_014390, intron 17 of 23)	-4724	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
0.2365-12	chr5	50258695	50259194	+	0	NA	Intergenic	Intergenic	7077	NR_104653	100287592	Hs.519298	NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
1.53663-13	chr16	85478682	85479181	+	0	NA	Intergenic	Intergenic	-139000	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
7.87812-16	chr7	30323770	30324269	+	0	NA	promoter-TSS (NM_147128)	promoter-TSS (NM_147128)	96	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
4.28291-5	chr16	89529604	89530103	+	0	NA	intron (NM_001256182, intron 1 of 13)	SVA_D|Other|Other	27116	NR_045839	29123	Hs.335003	NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain 11	protein-coding
2.05512-19	chr2	208490426	208490925	+	0	NA	promoter-TSS (NM_001330136)	promoter-TSS (NM_001330136)	102	NM_001330133	151194	Hs.664764	NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase like 21A	protein-coding
28.4164-3	chr7	127734632	127735131	+	0	NA	Intergenic	Intergenic	12968	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
1.39662-22	chr13	94157460	94158186	+	0	NA	intron (NM_005708, intron 1 of 8)	MER82|DNA|TcMar-Tigger	278762	NM_005708	10082	Hs.444329	NM_005708	ENSG00000183098	GPC6	OMIMD1	glypican 6	protein-coding
2.9073-8	chr10	99343715	99344214	+	0	NA	promoter-TSS (NM_001134670)	promoter-TSS (NM_001134670)	-138	NM_001134670	112817	Hs.180346	NM_138413	ENSG00000241935	HOGA1	C10orf65|DHDPS2|DHDPSL|HP3|NPL2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
14.3063-2	chr5	125800499	125800998	+	0	NA	promoter-TSS (NM_001146322)	promoter-TSS (NM_001146322)	-39	NM_001146322	65983	Hs.363558	NM_023927	ENSG00000155324	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
1.52427-21	chr7	125413354	125413853	+	0	NA	Intergenic	LTR1|LTR|ERV1	-509258	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
3.95774-12	chr19	53726403	53726902	+	0	NA	Intergenic	SVA_D|Other|Other	10451	NR_073396	390963	Hs.444446	NM_001001675		ZNF818P	ZNF818	zinc finger protein 818, pseudogene	pseudo
0.0348833-16	chr1	238027693	238028192	+	0	NA	intron (NR_027247, intron 2 of 11)	intron (NR_027247, intron 2 of 11)	2467	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
1.86419-20	chr8	125383547	125384338	+	0	NA	intron (NM_194291, intron 1 of 6)	CpG	998	NM_194291	157378	Hs.187646	NM_194291	ENSG00000164983	TMEM65	-	transmembrane protein 65	protein-coding
2.18963-27	chr4	188539719	188540218	+	0	NA	intron (NR_110436, intron 2 of 2)	intron (NR_110436, intron 2 of 2)	53827	NR_110436	100506272	Hs.508163	NR_110436	ENSG00000250590	LOC100506272	-	uncharacterized LOC100506272	ncRNA
0.172766-38	chr5	9156322	9156821	+	0	NA	intron (NM_003966, intron 11 of 22)	intron (NM_003966, intron 11 of 22)	-102564	NR_039779	100616326		NR_039779	ENSG00000266415	MIR4636	mir-4636	microRNA 4636	ncRNA
3.48722	chr8	34752920	34753419	+	0	NA	Intergenic	SVA_B|Other|Other	111730	NR_125746	103689844	Hs.590682	NR_125746	ENSG00000254344	LINC01288	TCONS_00014671	long intergenic non-protein coding RNA 1288	ncRNA
0.423927-7	chr4	185264907	185265406	+	0	NA	intron (NR_040108, intron 2 of 2)	LTR33A|LTR|ERVL	9974	NR_040108	728175	Hs.590107	NR_040108	ENSG00000180712	LOC728175	-	uncharacterized LOC728175	ncRNA
0.0174066	chr5	95066804	95067303	+	0	NA	5' UTR (NM_014899, exon 1 of 12)	5' UTR (NM_014899, exon 1 of 12)	203	NM_014899	22836	Hs.445030	NM_014899	ENSG00000164292	RHOBTB3	-	Rho related BTB domain containing 3	protein-coding
0.400052-18	chr12	50418995	50419494	+	0	NA	promoter-TSS (NM_001320000)	promoter-TSS (NM_001320000)	96	NM_001320006	29127	Hs.505469	NM_013277	ENSG00000161800	RACGAP1	CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
0.809219-3	chr5	157398435	157398934	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-112501	NM_014666	9685	Hs.644000	NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
9.0309-10	chr9	19408598	19409097	+	0	NA	promoter-TSS (NM_001010887)	promoter-TSS (NM_001010887)	-78	NM_001010887	340485	Hs.41379	NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
9.50782-7	chr8	124133505	124134004	+	0	NA	intron (NM_001330606, intron 10 of 20)	MSTB|LTR|ERVL-MaLR	48834	NM_145647	93594	Hs.492716	NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
2.30623	chr1	211370880	211371379	+	0	NA	Intergenic	SVA_C|Other|Other	-61579	NM_001136223	55758	Hs.356399	NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding
0.660068-12	chr1	76109110	76109609	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-27665	NM_001320283	204962	Hs.654821	NM_152697	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44 member 5	protein-coding
2.03426-7	chr7	13846111	13846610	+	0	NA	Intergenic	L1PA2|LINE|L1	179779	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
2.52588-13	chr20	15781402	15781901	+	0	NA	intron (NM_080676, intron 8 of 16)	SVA_D|Other|Other	122308	NR_130925	613266	Hs.309149	NR_130924		LOC613266	-	uncharacterized LOC613266	ncRNA
0.675262-4	chr2	13146962	13147461	+	0	NA	promoter-TSS (NR_038434)	promoter-TSS (NR_038434)	-73	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
0.123337-17	chr17	34957790	34958289	+	0	NA	promoter-TSS (NM_024864)	promoter-TSS (NM_024864)	14	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
0.181814-28	chr22	41842788	41843287	+	0	NA	promoter-TSS (NM_016272)	promoter-TSS (NM_016272)	-10	NM_016272	10766	Hs.474978	NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
1.10138-2	chr2	27665246	27665745	+	0	NA	TTS (NM_001321358)	TTS (NM_001321358)	262	NM_173853	200634	Hs.59509	NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
6.69586-5	chr8	116119424	116119923	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	560566	NM_001282902	7227	Hs.657018	NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
11.7718	chr8	42660348	42660847	+	0	NA	Intergenic	Intergenic	-36668	NM_001199279	8973	Hs.103128	NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
2.26945-8	chr11	191918	192417	+	0	NA	promoter-TSS (NM_001097610)	promoter-TSS (NM_001097610)	-913	NM_001097610	653486	Hs.127059	NM_001097610	ENSG00000268320	SCGB1C2	-	secretoglobin family 1C member 2	protein-coding
8.56985-9	chr6	6688075	6688574	+	0	NA	Intergenic	L1PA17|LINE|L1	-65265	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
9.62574-26	chr5	131425762	131426261	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	16526	NM_000758	1437	Hs.1349	NM_000758	ENSG00000164400	CSF2	GMCSF	colony stimulating factor 2	protein-coding
0.467237-31	chr12	57521470	57521969	+	0	NA	promoter-TSS (NM_002332)	promoter-TSS (NM_002332)	-563	NM_002332	4035	Hs.162757	NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|IGFBP3R|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
13.279-7	chr11	69264103	69264602	+	0	NA	Intergenic	Intergenic	23913	NM_001319657	102724265	Hs.448669	NM_001319657	ENSG00000255980	LOC102724265	-	uncharacterized LOC102724265	protein-coding
1.29596-25	chr4	86048748	86049247	+	0	NA	Intergenic	Intergenic	161026	NR_015359	404201	Hs.720920	NM_205857	ENSG00000180769	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	ncRNA
0.070049-67	chr9	134277421	134277920	+	0	NA	Intergenic	L1MB3|LINE|L1	-27807	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
10.57-2	chr1	117396369	117396868	+	0	NA	Intergenic	Intergenic	-55927	NM_020440	5738	Hs.418093	NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
0.5061-4	chr14	65193504	65194003	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	22627	NM_001308147	26030	Hs.509637	NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
20.716-3	chr17	65668794	65669293	+	0	NA	intron (NM_181671, intron 7 of 9)	intron (NM_181671, intron 7 of 9)	-44906	NM_015462	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
12.3958-2	chr12	41537815	41538314	+	0	NA	Intergenic	L2a|LINE|L2	-44186	NM_001164595	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
2.99296-14	chr12	44853281	44853780	+	0	NA	Intergenic	Intergenic	415914	NM_001145109	4753	Hs.505326	NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
9.74694-6	chr3	156406750	156407249	+	0	NA	intron (NM_001184718, intron 2 of 5)	L2b|LINE|L2	12546	NM_001184718	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
36.6154	chr7	115364475	115364974	+	0	NA	Intergenic	L1ME3A|LINE|L1	243643	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
4.97573-6	chr11	125439032	125439531	+	0	NA	promoter-TSS (NM_004879)	promoter-TSS (NM_004879)	-2	NR_110769	9538	Hs.643514	NM_004879	ENSG00000149547	EI24	EPG4|PIG8|TP53I8	EI24, autophagy associated transmembrane protein	protein-coding
6.16185-5	chr4	110481251	110481750	+	0	NA	exon (NM_017918, exon 1 of 8)	exon (NM_017918, exon 1 of 8)	145	NM_017918	55013	Hs.234149	NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding
0.798767-26	chr2	98235564	98236063	+	0	NA	Intergenic	Intergenic	-26708	NM_001862	1329	Hs.1342	NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
2.26214-15	chr15	98410118	98410617	+	0	NA	intron (NR_024172, intron 1 of 2)	intron (NR_024172, intron 1 of 2)	7292	NR_024173	91948	Hs.130423	NR_024172	ENSG00000251209	LINC00923	-	long intergenic non-protein coding RNA 923	ncRNA
4.4855-5	chr10	80861614	80862113	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	33071	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger MIZ-type containing 1	protein-coding
1.33713-12	chr10	72166844	72167343	+	0	NA	intron (NM_004096, intron 1 of 2)	SVA_D|Other|Other	3232	NM_004096	1979	Hs.621200	NM_004096	ENSG00000148730	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
1.37869-20	chrX	153149824	153150323	+	0	NA	intron (NR_130768, intron 3 of 6)	MIR3|SINE|MIR	1555	NM_001278116	3897	Hs.522818	NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
1.18045-10	chr6	18302935	18303434	+	0	NA	Intergenic	AluJr|SINE|Alu	-38385	NM_001134709	7913	Hs.484813	NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
0.0744648-39	chrX	101914613	101915112	+	0	NA	TTS (NM_001099410)	TTS (NM_001099410)	8533	NM_001184727	9737	Hs.729265	NM_014710	ENSG00000198932	GPRASP1	GASP|GASP-1|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding
3.40084-3	chr7	27973097	27973596	+	0	NA	intron (NM_175061, intron 2 of 4)	intron (NM_175061, intron 2 of 4)	193632	NM_001079864	8887	Hs.34576	NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
1.33122-30	chr16	79042627	79043126	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	591746	NM_001031804	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
2.652	chr2	178628312	178628811	+	0	NA	intron (NM_001077358, intron 9 of 18)	MER91A|DNA|hAT-Tip100	90511	NR_136171	105373764	Hs.666361	NR_136171	ENSG00000229941	LOC105373764	-	uncharacterized LOC105373764	ncRNA
6.32644-11	chr8	127143586	127144085	+	0	NA	Intergenic	Intergenic	-180394	NR_038446	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
0.163737-33	chr9	122306824	122307323	+	0	NA	Intergenic	Intergenic	-175334	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	BRINP1	DBC1|DBCCR1|FAM5A	BMP/retinoic acid inducible neural specific 1	protein-coding
0.33389-8	chr2	25599580	25600079	+	0	NA	TTS (NM_183360)	TTS (NM_183360)	-34370	NR_135490	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
4.54693-8	chr9	33290244	33290743	+	0	NA	promoter-TSS (NM_147134)	promoter-TSS (NM_147134)	78	NM_001318758	4799	Hs.413074	NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
7.9588-14	chr4_gl000193_random	89985	90484	+	0	NA	Intergenic	SST1|Satellite|centr	-1859	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
7.69551-7	chr17	55109704	55110203	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-12886	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
0.90444-14	chr11	59328258	59328757	+	0	NA	Intergenic	CpG	34124	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
1.67491-13	chr10	104178647	104179146	+	0	NA	promoter-TSS (NM_002779)	promoter-TSS (NM_002779)	5	NM_002779	5662	Hs.154658	NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
2.1254-12	chr9	93498295	93498794	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-65418	NM_003177	6850	Hs.371720	NM_003177	ENSG00000165025	SYK	p72-Syk	spleen associated tyrosine kinase	protein-coding
0.190881-33	chr1	191320029	191320528	+	0	NA	Intergenic	L1MCc|LINE|L1	726258	NR_033922	440704	Hs.518802	NR_033922	ENSG00000231175	LINC01720	-	long intergenic non-protein coding RNA 1720	ncRNA
0.798767	chr3	139925478	139925977	+	0	NA	intron (NM_022131, intron 2 of 16)	intron (NM_022131, intron 2 of 16)	271700	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
13.279-11	chr18	60938309	60938808	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	48055	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
38.5078	chr6	53152468	53152967	+	0	NA	exon (NM_001242828, exon 4 of 9)	exon (NM_001242828, exon 4 of 9)	10926	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
0.11441-26	chr8	109650988	109651487	+	0	NA	intron (NR_136411, intron 2 of 3)	MLT1H|LTR|ERVL-MaLR	148607	NR_136411	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
7.03335-7	chr7	8410652	8411151	+	0	NA	Intergenic	L1PB1|LINE|L1	-62684	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
9.87163-27	chr11	47207803	47208302	+	0	NA	promoter-TSS (NM_001184975)	promoter-TSS (NM_001184975)	-42	NM_001184974	29763	Hs.334639	NM_016223	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
1.18615-10	chr12	6532645	6533144	+	0	NA	Intergenic	Intergenic	-21157	NM_001242	939	Hs.355307	NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
28.1816-4	chr6	22099406	22099905	+	0	NA	intron (NR_015410, intron 8 of 11)	intron (NR_015410, intron 8 of 11)	47767	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
19.6257-4	chr14	38142604	38143103	+	0	NA	intron (NM_001310135, intron 3 of 32)	intron (NM_001310135, intron 3 of 32)	78449	NM_001310135	319089	Hs.659936	NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
4.86782-3	chr18	21017395	21018121	+	0	NA	exon (NM_032933, exon 1 of 15)	exon (NM_032933, exon 1 of 15)	175	NM_001318834	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
4.54693-2	chr1	210033576	210034075	+	0	NA	Intergenic	Intergenic	32513	NM_014388	27042	Hs.194754	NM_014388	ENSG00000117597	DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding
0.8302-2	chr7	100027780	100028279	+	0	NA	exon (NM_019606, exon 1 of 4)	exon (NM_019606, exon 1 of 4)	775	NM_019606	56257	Hs.178011	NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
1.33122-14	chr17	37773819	37774644	+	0	NA	Intergenic	CpG	-8946	NM_032192	84152	Hs.286192	NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
6.57577-5	chr5	469784	470283	+	0	NA	TTS (NR_024158)	TTS (NR_024158)	3047	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	ncRNA
2.78189-9	chr7	74042366	74042865	+	0	NA	Intergenic	Intergenic	-29376	NM_001163636	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
14.3063	chr14	77065485	77065984	+	0	NA	Intergenic	Intergenic	-162501	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
4.24812-10	chr7	22473207	22473706	+	0	NA	intron (NM_207342, intron 4 of 4)	intron (NM_207342, intron 4 of 4)	66445	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
6.61544-4	chr12	68727894	68728393	+	0	NA	Intergenic	Intergenic	-1982	NM_017440	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
3.37242-11	chr3	120066909	120067408	+	0	NA	intron (NM_001099678, intron 1 of 3)	L2c|LINE|L2	1028	NM_001099678	116064	Hs.518084	NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
16.7572	chr8	29133081	29133580	+	0	NA	Intergenic	Intergenic	-12720	NM_015254	23303	Hs.444767	NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
25.6543	chr5	112987792	112988291	+	0	NA	Intergenic	LTR38C|LTR|ERV1	138682	NM_022828	64848	Hs.231942	NM_022828	ENSG00000047188	YTHDC2	CAHL	YTH domain containing 2	protein-coding
5.05845-12	chr4	8194377	8194876	+	0	NA	Intergenic	Intergenic	-6345	NM_018986	54436	Hs.479116	NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
2.34331-5	chr11	102187913	102188412	+	0	NA	promoter-TSS (NM_001165)	promoter-TSS (NM_001165)	-19	NM_182962	330	Hs.127799	NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
0.400052-17	chr9	113018791	113019290	+	0	NA	promoter-TSS (NM_003329)	promoter-TSS (NM_003329)	-120	NM_001244938	7295	Hs.435136	NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1	thioredoxin	protein-coding
1.59894-18	chr16	65089	65588	+	0	NA	Intergenic	Intergenic	1781	NR_107063	102465910		NR_107063	ENSG00000275449	MIR6859-3	hsa-mir-6859-3	microRNA 6859-3	ncRNA
4.67246-6	chr1	236202879	236203378	+	0	NA	intron (NM_002508, intron 4 of 19)	intron (NM_002508, intron 4 of 19)	25353	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
2.99296-15	chr1	182307221	182307720	+	0	NA	Intergenic	Intergenic	-24274	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
1.58015-9	chrX	39754470	39754969	+	0	NA	Intergenic	Intergenic	202000	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
11.2668-6	chr5	6466804	6467303	+	0	NA	intron (NM_001145161, intron 1 of 1)	intron (NM_001145161, intron 1 of 1)	18317	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
1.96543-7	chr4	61723068	61723567	+	0	NA	Intergenic	Intergenic	-65020	NR_039652	100616450		NR_039652	ENSG00000265829	MIR548AG1	-	microRNA 548ag-1	ncRNA
1.07905-23	chr2	131850754	131851253	+	0	NA	promoter-TSS (NM_001321748)	promoter-TSS (NM_001321748)	30	NM_001321745	130074	Hs.534679	NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
0.579919-7	chr2	146522148	146522647	+	0	NA	Intergenic	Intergenic	-822228	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
0.390538-9	chr21	43430410	43431390	+	0	NA	promoter-TSS (NM_001098402)	promoter-TSS (NM_001098402)	-404	NM_020727	49854	Hs.434947	NM_020727	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
7.82516-3	chr16	11929656	11930155	+	0	NA	3' UTR (NM_015659, exon 9 of 9)	3' UTR (NM_015659, exon 9 of 9)	-7216	NR_131216	400500	Hs.24611	NR_024049	ENSG00000262117	BCAR4	-	breast cancer anti-estrogen resistance 4 (non-protein coding)	ncRNA
2.42604-4	chr3	31770526	31771025	+	0	NA	intron (NM_017784, intron 6 of 11)	intron (NM_017784, intron 6 of 11)	25070	NR_049771	100874206	Hs.662428	NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
0.0877392-31	chr16	21537450	21537949	+	0	NA	Intergenic	Intergenic	-5934	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
30.6449	chr5	58612928	58613427	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	39550	NM_001197219	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
3.53596-9	chr3	125800510	125801009	+	0	NA	intron (NM_001008485, intron 1 of 11)	intron (NM_001008485, intron 1 of 11)	2375	NM_001008485	54946	Hs.573007	NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
5.65431-7	chr18	19180221	19180720	+	0	NA	intron (NM_052911, intron 1 of 11)	CpG	223	NM_052911	114799	Hs.464733	NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
0.69051-4	chr6	100038597	100039096	+	0	NA	Intergenic	CpG	-15804	NM_021620	59336	Hs.287386	NM_021620	ENSG00000112238	PRDM13	MU-MB-20.220|PFM10	PR/SET domain 13	protein-coding
4.01209-18	chr22	39129690	39130189	+	0	NA	TTS (NM_004286)	TTS (NM_004286)	21528	NM_001199580	25777	Hs.517622	NM_015374	ENSG00000100242	SUN2	UNC84B	Sad1 and UNC84 domain containing 2	protein-coding
12.4413-2	chr7	127480941	127481440	+	0	NA	intron (NM_014390, intron 11 of 23)	intron (NM_014390, intron 11 of 23)	-156372	NR_027330	27099	Hs.657377	NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
9.54677	chr10	2962825	2963324	+	0	NA	Intergenic	Intergenic	-146638	NM_001323071	5214	Hs.26010	NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
0.0305075-63	chr6	36286978	36287477	+	0	NA	exon (NM_001010903, exon 11 of 12)	exon (NM_001010903, exon 11 of 12)	17435	NM_001010903	389384	Hs.162104	NM_001010903	ENSG00000189325	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
1.40862-8	chr5	106198409	106198908	+	0	NA	intron (NR_104671, intron 2 of 3)	intron (NR_104671, intron 2 of 3)	148057	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
5.68636-2	chr5	1641554	1642053	+	0	NA	Intergenic	Intergenic	-7683	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
10.4721-2	chr6	158481352	158481851	+	0	NA	intron (NM_003898, intron 7 of 26)	intron (NM_003898, intron 7 of 26)	43521	NM_001178088	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
4.37707-12	chr10	70715644	70716633	+	0	NA	promoter-TSS (NM_001256910)	promoter-TSS (NM_001256910)	-58	NM_001256910	9188	Hs.223141	NM_004728	ENSG00000165732	DDX21	GUA|GURDB|RH-II/GU|RH-II/GuA	DExD-box helicase 21	protein-coding
0.15923	chr14	64770039	64770538	+	0	NA	5' UTR (NM_001291712, exon 3 of 14)	5' UTR (NM_001291712, exon 3 of 14)	-9160	NM_001437	2100	Hs.660607	NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2	estrogen receptor 2	protein-coding
1.31356-7	chr2	192069929	192070428	+	0	NA	Intergenic	SVA_D|Other|Other	-39824	NM_001161819	4430	Hs.439620	NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
10.8145-2	chr9	81972458	81972957	+	0	NA	Intergenic	Intergenic	-212126	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
3.75718-4	chr6	17167480	17167979	+	0	NA	Intergenic	Intergenic	65240	NM_001190766	401236	Hs.677399	NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
0.0261362	chrX	118699167	118699666	+	0	NA	promoter-TSS (NM_001170570)	promoter-TSS (NM_001170570)	-19	NM_022101	63932	Hs.248572	NM_022101	ENSG00000018610	CXorf56	-	chromosome X open reading frame 56	protein-coding
17.8516-3	chr6	158332280	158332779	+	0	NA	intron (NM_016224, intron 9 of 17)	intron (NM_016224, intron 9 of 17)	-70359	NM_003898	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
5.25784-8	chr4	146404497	146404996	+	0	NA	intron (NM_001003688, intron 1 of 6)	intron (NM_001003688, intron 1 of 6)	789	NM_001003688	4086	Hs.604588	NM_005900	ENSG00000170365	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
0.296531-95	chr12	95108075	95108574	+	0	NA	Intergenic	Intergenic	-63986	NM_020698	57458	Hs.370410	NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
0.338583-21	chr2	220360106	220360605	+	0	NA	promoter-TSS (NM_001286811)	promoter-TSS (NM_001286811)	-722	NM_001286811	100996693	Hs.21639	NM_001286811	ENSG00000072195	LOC100996693	-	CAVP-target protein-like	protein-coding
5.21434-2	chr5	14108531	14109030	+	0	NA	Intergenic	Intergenic	-35031	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
1.51195-24	chr16	30545594	30546093	+	0	NA	exon (NM_001305018, exon 1 of 3)	exon (NM_001305018, exon 1 of 3)	448	NM_001305020	65988	Hs.592032	NM_023931	ENSG00000169955	ZNF747	-	zinc finger protein 747	protein-coding
0.0305075-73	chr5	179475714	179476213	+	0	NA	intron (NM_018434, intron 1 of 8)	intron (NM_018434, intron 1 of 8)	23155	NM_001280801	55819	Hs.484363	NM_018434	ENSG00000113269	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
4.76254-8	chr15	43307352	43307851	+	0	NA	intron (NM_174916, intron 29 of 46)	SVA_D|Other|Other	90685	NM_174916	197131	Hs.591121	NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
2.78189-20	chr19	49360706	49361205	+	0	NA	intron (NM_020904, intron 8 of 19)	SVA_D|Other|Other	10929	NM_001161354	57664	Hs.9469	NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
0.227338-12	chr20	15815467	15815966	+	0	NA	intron (NM_080676, intron 8 of 16)	MLT1F|LTR|ERVL-MaLR	88243	NR_130925	613266	Hs.309149	NR_130924		LOC613266	-	uncharacterized LOC613266	ncRNA
25.544-2	chr8	41463239	41463738	+	0	NA	intron (NM_178819, intron 2 of 12)	intron (NM_178819, intron 2 of 12)	-27601	NR_125824	102723729	Hs.586384	NR_125824		LOC102723729	-	uncharacterized LOC102723729	ncRNA
2.60428-9	chr8	143701784	143702283	+	0	NA	Intergenic	Intergenic	-6200	NM_015193	23237	Hs.40888	NM_015193	ENSG00000198576	ARC	Arg3.1	activity regulated cytoskeleton associated protein	protein-coding
0.48177-42	chr4	186392776	186393275	+	0	NA	promoter-TSS (NM_001145411)	promoter-TSS (NM_001145411)	-112	NM_001145411	256309	Hs.41101	NM_152775	ENSG00000168491	CCDC110	CT52|KM-HN-1|KMHN1	coiled-coil domain containing 110	protein-coding
0.268721-65	chr8	23539773	23540272	+	0	NA	intron (NM_006167, intron 1 of 1)	CpG	380	NM_001256339	4824	Hs.55999	NM_006167	ENSG00000167034	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
0.649968-20	chr6	122354636	122355135	+	0	NA	Intergenic	Intergenic	-365811	NM_004506	3298	Hs.158195	NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
1.27844-6	chr8	99097745	99098244	+	0	NA	intron (NM_001170806, intron 1 of 1)	intron (NM_001170806, intron 1 of 1)	21244	NM_173549	203111	Hs.171455	NM_173549	ENSG00000177459	ERICH5	C8orf47	glutamate rich 5	protein-coding
13.9041-2	chr17	26832489	26832988	+	0	NA	Intergenic	Intergenic	-18221	NM_003593	8456	Hs.58611	NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|WHN	forkhead box N1	protein-coding
0.856568-32	chr14	95623160	95623659	+	0	NA	promoter-TSS (NR_015415)	promoter-TSS (NR_015415)	350	NM_177438	23405	Hs.87889	NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|HERNA|K12H4.8-LIKE|MNG1|RMSE2	dicer 1, ribonuclease III	protein-coding
8.63279-2	chr6	100330050	100330549	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-111615	NR_038384	728012	Hs.434366	NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
1.04577	chr14	93156539	93157038	+	0	NA	Intergenic	Intergenic	58259	NM_001008530	5641	Hs.18069	NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
1.26098-7	chr6	97663202	97663701	+	0	NA	intron (NM_198468, intron 14 of 24)	intron (NM_198468, intron 14 of 24)	67601	NM_198468	253714	Hs.444292	NM_198468	ENSG00000146263	MMS22L	C6orf167|dJ39B17.2	MMS22 like, DNA repair protein	protein-coding
2.39578-12	chr2	37458323	37458822	+	0	NA	promoter-TSS (NM_144736)	promoter-TSS (NM_144736)	168	NM_005760	10153	Hs.135406	NM_005760	ENSG00000115816	CEBPZ	CBF|CBF2|HSP-CBF|NOC1	CCAAT/enhancer binding protein zeta	protein-coding
9.50782-15	chr20	17605574	17606073	+	0	NA	intron (NM_004587, intron 12 of 24)	intron (NM_004587, intron 12 of 24)	55224	NM_001011546	11034	Hs.304192	NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
4.59671-5	chr2	179315753	179316252	+	0	NA	promoter-TSS (NM_001139517)	promoter-TSS (NM_001139517)	-35	NM_001316362	8575	Hs.570274	NM_003690	ENSG00000180228	PRKRA	DYT16|HSD14|PACT|RAX	protein activator of interferon induced protein kinase EIF2AK2	protein-coding
15.4363-4	chr16	78218356	78218855	+	0	NA	intron (NM_001291997, intron 4 of 7)	intron (NM_001291997, intron 4 of 7)	85295	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
7.01147-4	chr11	67635871	67636370	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-63313	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
37.7989-4	chrX	63085675	63086174	+	0	NA	Intergenic	L1PA4|LINE|L1	-79957	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468|mir-1468	microRNA 1468	ncRNA
12.1968-2	chr20	31223558	31224057	+	0	NA	intron (NM_182584, intron 4 of 4)	intron (NM_182584, intron 4 of 4)	15976	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding
10.4915	chr1	231347034	231347533	+	0	NA	intron (NM_001004342, intron 8 of 9)	intron (NM_001004342, intron 8 of 9)	-23910	NM_001256615	149373	Hs.632505	NM_001256615	ENSG00000235710	LOC149373	-	uncharacterized LOC149373	protein-coding
0.00869459-16	chr6	124440675	124441174	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	-163227	NM_001300740	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
3.65523-6	chr12	121484291	121484790	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-7495	NM_003733	8638	Hs.118633	NM_003733	ENSG00000135114	OASL	OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
0.400052-38	chrX	131866295	131866794	+	0	NA	intron (NM_001077188, intron 3 of 5)	THE1B|LTR|ERVL-MaLR	64874	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
5.0724-15	chr18	3585767	3586266	+	0	NA	intron (NM_001003809, intron 4 of 9)	intron (NM_001003809, intron 4 of 9)	-8096	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
1.43876-5	chr9_gl000198_random	60976	61475	+	0	NA	NA	L1PA16|LINE|L1	NA	NA								
12.0971-7	chr16	14730397	14730896	+	0	NA	intron (NM_001330500, intron 1 of 5)	LTR5_Hs|LTR|ERVK	3978	NM_016561	51283	Hs.435556	NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
8.50781-2	chr2	23779705	23780204	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	171656	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
0.222764-8	chrX	38660330	38660829	+	0	NA	promoter-TSS (NM_001098790)	promoter-TSS (NM_001098790)	-106	NM_001098790	58526	Hs.522605	NM_021242	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
9.50782-2	chr3	190191468	190191967	+	0	NA	Intergenic	SVA_D|Other|Other	-24052	NM_207316	131920	Hs.335321	NM_207316	ENSG00000198398	TMEM207	UNQ846	transmembrane protein 207	protein-coding
1.26098-17	chr2	62081719	62082218	+	0	NA	promoter-TSS (NM_001201543)	promoter-TSS (NM_001201543)	-690	NM_032180	84140	Hs.440466	NM_032180	ENSG00000170264	FAM161A	RP28	family with sequence similarity 161 member A	protein-coding
1.30182-6	chr2	30670180	30670679	+	0	NA	intron (NM_001304446, intron 1 of 5)	CpG	337	NM_001304446	253558	Hs.468048	NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
4.16801-5	chr18	43873080	43873579	+	0	NA	Intergenic	Intergenic	-40858	NR_046357	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
0.213631	chr13	31259540	31260039	+	0	NA	Intergenic	MIR|SINE|MIR	-27826	NM_001204406	241	Hs.507658	NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
64.3771-2	chr13	107448644	107449143	+	0	NA	Intergenic	Intergenic	142665	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
0.362122-3	chr16	67218128	67218627	+	0	NA	promoter-TSS (NM_001040715)	promoter-TSS (NM_001040715)	-494	NM_001040715	653319	Hs.651201	NM_001040715	ENSG00000196123	KIAA0895L	-	KIAA0895 like	protein-coding
9.87163-4	chr8	41467537	41468036	+	0	NA	intron (NM_178819, intron 4 of 12)	intron (NM_178819, intron 4 of 12)	-31899	NR_125824	102723729	Hs.586384	NR_125824		LOC102723729	-	uncharacterized LOC102723729	ncRNA
0.0833099-50	chr5	96038099	96038598	+	0	NA	promoter-TSS (NM_001330631)	promoter-TSS (NM_001330631)	-16	NM_001042446	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding
0.268721-48	chr4	48186298	48186797	+	0	NA	intron (NM_003215, intron 2 of 17)	intron (NM_003215, intron 2 of 17)	-50274	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
17.6195-2	chr18	67068962	67069461	+	0	NA	intron (NM_152721, intron 1 of 7)	intron (NM_152721, intron 1 of 7)	927	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
9.1364-30	chr11	133941139	133941638	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	2568	NM_032801	83700	Hs.150718	NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
1.37869-36	chr15	43985606	43986105	+	0	NA	promoter-TSS (NR_135856)	promoter-TSS (NR_135856)	-34	NM_001321926	548596	Hs.654988	NM_001015001	ENSG00000223572	CKMT1A	CKMT1|U-MtCK|mia-CK	creatine kinase, mitochondrial 1A	protein-coding
15.4516-7	chr5	6900877	6901376	+	0	NA	Intergenic	Intergenic	-73092	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
2.88193-14	chr13	113737976	113738475	+	0	NA	intron (NM_024979, intron 17 of 29)	intron (NM_024979, intron 17 of 29)	-21877	NM_001267554	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
9.10095-7	chr17	32946609	32947108	+	0	NA	intron (NM_001304438, intron 1 of 8)	intron (NM_001304438, intron 1 of 8)	39090	NM_001304438	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
0.0788851-14	chr2	76705358	76705857	+	0	NA	Intergenic	Intergenic	-507484	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
0.609802-22	chr6	31865975	31866474	+	0	NA	promoter-TSS (NM_006709)	promoter-TSS (NM_006709)	662	NM_001282457	717	Hs.408903	NM_000063	ENSG00000166278	C2	ARMD14|CO2	complement C2	protein-coding
9.50782-23	chr5	35176453	35176952	+	0	NA	intron (NM_000949, intron 1 of 9)	LTR5_Hs|LTR|ERVK	53989	NM_000949	5618	Hs.368587	NM_000949	ENSG00000113494	PRLR	HPRL|MFAB|hPRLrI	prolactin receptor	protein-coding
11.0073-2	chr3	45624344	45624843	+	0	NA	Intergenic	Intergenic	-11730	NM_014240	8994	Hs.193370	NM_014240	ENSG00000144791	LIMD1	-	LIM domains containing 1	protein-coding
2.96709-18	chr9	127623507	127624006	+	0	NA	promoter-TSS (NM_030978)	promoter-TSS (NM_030978)	484	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
1.00179-5	chr19	40336789	40337288	+	0	NA	promoter-TSS (NM_001436)	promoter-TSS (NM_001436)	16	NM_001436	2091	Hs.299002	NM_001436	ENSG00000105202	FBL	FIB|FLRN|RNU3IP1	fibrillarin	protein-coding
0.931265-4	chr7	129142075	129142574	+	0	NA	promoter-TSS (NM_001195243)	promoter-TSS (NM_001195243)	4	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
0.0217692-8	chr5	72511793	72512292	+	0	NA	Intergenic	CpG	-14254	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
4.24812-12	chr1	16766833	16767332	+	0	NA	promoter-TSS (NM_001145277)	promoter-TSS (NM_001145277)	-85	NM_018090	55707	Hs.437385	NM_018090	ENSG00000157191	NECAP2	-	NECAP endocytosis associated 2	protein-coding
0.824945	chr14	51012239	51012738	+	0	NA	intron (NM_001127713, intron 1 of 13)	LTR57-int|LTR|ERVL	12688	NM_001127713	51062	Hs.584905	NM_015915	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
7.01147-16	chr1	181392609	181393108	+	0	NA	Intergenic	Intergenic	-59828	NM_001205294	777	Hs.437444	NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
0.362122-13	chr3	9974402	9974901	+	0	NA	promoter-TSS (NM_015513)	promoter-TSS (NM_015513)	-873	NM_015513	78987	Hs.9383	NM_015513	ENSG00000163703	CRELD1	AVSD2|CIRRIN	cysteine rich with EGF like domains 1	protein-coding
2.26945-6	chr7	21067816	21068315	+	0	NA	Intergenic	Intergenic	193015	NR_126381	104355138	Hs.650722	NR_126381	ENSG00000232790	LINC01162	-	long intergenic non-protein coding RNA 1162	ncRNA
7.77284-7	chr18	21718519	21719018	+	0	NA	promoter-TSS (NM_012189)	promoter-TSS (NM_012189)	-152	NM_138643	26256	Hs.511983	NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine phosphorylation regulated	protein-coding
25.3018-2	chr2	11577681	11578180	+	0	NA	Intergenic	Intergenic	28373	NM_198256	1876	Hs.603093	NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
1.72631-9	chr7	91509846	91510553	+	0	NA	promoter-TSS (NM_001301134)	promoter-TSS (NM_001301134)	-165	NM_001301134	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
2.05512-25	chr11	8189880	8190379	+	0	NA	intron (NM_001346694, intron 1 of 6)	intron (NM_001346694, intron 1 of 6)	512	NM_001135109	79608	Hs.231850	NM_024557	ENSG00000166405	RIC3	AYST720|PRO1385	RIC3 acetylcholine receptor chaperone	protein-coding
1.67491-11	chr1	201481988	201482487	+	0	NA	Intergenic	Intergenic	-5850	NM_004078	1465	Hs.108080	NM_004078	ENSG00000159176	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286	cysteine and glycine rich protein 1	protein-coding
0.141246-36	chr7	110731536	110732035	+	0	NA	intron (NM_018334, intron 1 of 1)	intron (NM_018334, intron 1 of 1)	723	NM_001099658	54674	Hs.3781	NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
3.87216-12	chr10	112836453	112836952	+	0	NA	promoter-TSS (NM_000681)	promoter-TSS (NM_000681)	-88	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
0.438316-6	chr3	72022421	72022920	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	126936	NR_104116	285286	Hs.559386	NR_104116	ENSG00000241163	LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
4.97573-8	chr19	10425980	10426479	+	0	NA	TTS (NM_133452)	TTS (NM_133452)	462	NM_001031734	112812	Hs.654865	NM_080665	ENSG00000267673	FDX1L	FDX2	ferredoxin 1 like	protein-coding
0.979971-26	chr21	44298897	44299396	+	0	NA	5' UTR (NM_001260477, exon 1 of 11)	5' UTR (NM_001260477, exon 1 of 11)	239	NM_001260477	10785	Hs.248815	NM_018669	ENSG00000160193	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
0.736576-13	chr5	16263969	16264468	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-84321	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane associated ring-CH-type finger 11	protein-coding
0.952845-27	chr6	28366982	28367773	+	0	NA	intron (NR_136510, intron 1 of 6)	CpG	167	NR_136513	9753	Hs.134816	NM_014724	ENSG00000158691	ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
5.62249-18	chr7	137488581	137489080	+	0	NA	intron (NM_001321708, intron 1 of 32)	intron (NM_001321708, intron 1 of 32)	42248	NM_001321709	9162	Hs.242947	NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding
5.18557-4	chr2	75426458	75426957	+	0	NA	promoter-TSS (NM_001058)	promoter-TSS (NM_001058)	-62	NM_001058	6869	Hs.633301	NM_001058	ENSG00000115353	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
2.9243-13	chr13	113951119	113951618	+	0	NA	promoter-TSS (NM_005561)	promoter-TSS (NM_005561)	-101	NM_005561	3916	Hs.494419	NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
3.60514	chr8	97173023	97173522	+	0	NA	promoter-TSS (NM_001001557)	promoter-TSS (NM_001001557)	-252	NM_001001557	392255	Hs.492277	NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1	growth differentiation factor 6	protein-coding
2.33587-7	chr4	184365470	184365969	+	0	NA	promoter-TSS (NM_017632)	promoter-TSS (NM_017632)	-25	NM_017632	55602	Hs.592508	NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
0.385789-9	chr10	99599838	99600337	+	0	NA	intron (NR_108035, intron 1 of 2)	intron (NR_108035, intron 1 of 2)	9468	NR_108035	100505561	Hs.351904	NR_108035	ENSG00000227356	LINC00866	-	long intergenic non-protein coding RNA 866	ncRNA
7.01147-9	chr3	119993610	119994109	+	0	NA	Intergenic	Intergenic	-30717	NM_153002	165829	Hs.333358	NM_153002	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
0.91515-20	chr16	85253751	85254250	+	0	NA	Intergenic	Intergenic	-62564	NR_038859	197196	Hs.679002	NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
0.920515-25	chr20	8000372	8000871	+	0	NA	promoter-TSS (NM_021156)	promoter-TSS (NM_021156)	-145	NM_021156	56255	Hs.169358	NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
2.32102-4	chr18	12086062	12086561	+	0	NA	Intergenic	REP522|Satellite|telo	-7537	NM_001277333	342850	Hs.448906	NM_001277333	ENSG00000181626	ANKRD62	DKFZp779B1634	ankyrin repeat domain 62	protein-coding
3.15155-6	chr11	13119532	13120031	+	0	NA	Intergenic	Intergenic	88811	NM_001080521	644943	Hs.134650	NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding
6.17983-4	chr2	123718372	123718871	+	0	NA	Intergenic	Intergenic	-1064243	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
9.35542-14	chr8	11659897	11660396	+	0	NA	promoter-TSS (NM_001287745)	promoter-TSS (NM_001287745)	26	NM_004462	2222	Hs.593928	NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
0.867161	chr5	81148832	81149331	+	0	NA	Intergenic	Intergenic	-102009	NM_001256734	23635	Hs.102735	NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
0.414361-12	chr1	209630130	209630629	+	0	NA	Intergenic	Intergenic	24901	NR_029622	406988		NR_029622	ENSG00000230937	MIR205	MIRN205|mir-205	microRNA 205	ncRNA
1.2436-5	chr13	46737296	46737795	+	0	NA	intron (NM_002298, intron 1 of 15)	SVA_C|Other|Other	18914	NM_002298	3936	Hs.381099	NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
47.2354	chr2	195197778	195198277	+	0	NA	Intergenic	Intergenic	-10966	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
1.60522-6	chr12	9572529	9573028	+	0	NA	non-coding (NR_033399, exon 22 of 27)	non-coding (NR_033399, exon 22 of 27)	-12768	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
0.545314-7	chr3	184403399	184403898	+	0	NA	Intergenic	Intergenic	26188	NM_022149	64110	Hs.306123	NM_022149	ENSG00000177383	MAGEF1	-	MAGE family member F1	protein-coding
5.90067-12	chr3	185438586	185439085	+	0	NA	intron (NR_126326, intron 2 of 7)	intron (NR_126326, intron 2 of 7)	7795	NR_126326	646600	Hs.647949	NR_027317	ENSG00000163915	IGF2BP2-AS1	C3orf65	IGF2BP2 antisense RNA 1	ncRNA
1.67491-15	chr9	38620419	38621244	+	0	NA	promoter-TSS (NR_027294)	promoter-TSS (NR_027294)	-174	NM_147195	253650	Hs.644630	NM_147195	ENSG00000180071	ANKRD18A	-	ankyrin repeat domain 18A	protein-coding
3.39135-20	chr7	73819513	73820012	+	0	NA	3' UTR (NM_032421, exon 16 of 16)	3' UTR (NM_032421, exon 16 of 16)	-48358	NM_001199207	9569	Hs.647056	NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
16.3827-6	chr2	69395885	69396384	+	0	NA	intron (NM_053034, intron 13 of 14)	intron (NM_053034, intron 13 of 14)	65320	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
30.5899	chr12	1157310	1157809	+	0	NA	intron (NR_027949, intron 2 of 15)	intron (NR_027949, intron 2 of 15)	20645	NM_001301248	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
1.11259-7	chr17	79701222	79701721	+	0	NA	Intergenic	Intergenic	22205	NM_001270953	1468	Hs.548187	NM_012140	ENSG00000183048	SLC25A10	DIC	solute carrier family 25 member 10	protein-coding
12.3882-3	chr12	93378806	93379305	+	0	NA	Intergenic	L1PA15|LINE|L1	-55948	NM_003566	8411	Hs.567367	NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
1.92465-18	chr5	84958980	84959479	+	0	NA	Intergenic	L1PA2|LINE|L1	-619033	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	neuroblastoma breakpoint family member 22, pseudogene	pseudo
15.867-2	chr8	104033016	104033515	+	0	NA	promoter-TSS (NM_001695)	promoter-TSS (NM_001695)	17	NM_001695	528	Hs.86905	NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
5.867-13	chr17	41116427	41116926	+	0	NA	promoter-TSS (NM_001261434)	promoter-TSS (NM_001261434)	-161	NM_001261434	80755	Hs.317403	NM_001261434	ENSG00000266967	AARSD1	-	alanyl-tRNA synthetase domain containing 1	protein-coding
13.7572	chr6	48036343	48036842	+	0	NA	promoter-TSS (NM_001013732)	promoter-TSS (NM_001013732)	-167	NM_207499	442213	Hs.659409	NM_207499	ENSG00000244694	PTCHD4	C6orf138|PTCH53|dJ402H5.2	patched domain containing 4	protein-coding
0.486625-18	chr15	85201357	85201856	+	0	NA	5' UTR (NM_021077, exon 1 of 3)	5' UTR (NM_021077, exon 1 of 3)	196	NM_205858	4828	Hs.386470	NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
0.0305075-23	chr20	17919570	17920069	+	0	NA	Intergenic	Intergenic	23770	NR_003045	692086	Hs.680747	NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
15.6225	chr7	95865327	95865826	+	0	NA	intron (NM_014251, intron 3 of 17)	intron (NM_014251, intron 3 of 17)	-16508	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
6.17983-8	chr4	59029302	59029801	+	0	NA	Intergenic	LTR16C|LTR|ERVL	372942	NR_133943	105377671	Hs.225045	NR_133943	ENSG00000250340	LOC105377671	-	uncharacterized LOC105377671	ncRNA
0.660068-5	chr20	29570720	29571219	+	0	NA	promoter-TSS (NR_133643)	promoter-TSS (NR_133643)	-606	NR_133643	105379478	Hs.98121	NR_133643		LINC01598	-	long intergenic non-protein coding RNA 1598	ncRNA
13.439-2	chr8	123692954	123693453	+	0	NA	intron (NR_126348, intron 2 of 3)	intron (NR_126348, intron 2 of 3)	13142	NR_126348	104266958	Hs.575540	NR_126348	ENSG00000253819	LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
5.42118	chr4	113627641	113628140	+	0	NA	Intergenic	Intergenic	-58177	NR_029857	442894		NR_029857	ENSG00000249532	MIR302B	MIRN302B|mir-302b	microRNA 302b	ncRNA
0.00434512-3	chr1	33167274	33167773	+	0	NA	intron (NM_030786, intron 1 of 4)	intron (NM_030786, intron 1 of 4)	838	NM_030786	81493	Hs.712631	NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
18.5699-5	chr4	38000862	38001361	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	39055	NM_006607	10744	Hs.668806	NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
0.25028-35	chr5	68788296	68788795	+	0	NA	promoter-TSS (NM_001205254)	promoter-TSS (NM_001205254)	-45	NM_001205254	100506658	Hs.592605	NM_002538	ENSG00000197822	OCLN	BLCPMG|PPP1R115	occludin	protein-coding
2.82329-22	chr14	25046975	25047474	+	0	NA	Intergenic	L1PA14|LINE|L1	-1758	NM_001911	1511	Hs.421724	NM_001911	ENSG00000100448	CTSG	CATG|CG	cathepsin G	protein-coding
1.91789-8	chr17	4890777	4891276	+	0	NA	promoter-TSS (NM_001171168)	promoter-TSS (NM_001171168)	-66	NM_001171166	23125	Hs.632242	NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
8.79426-3	chrUn_gl000214	129334	129833	+	0	NA	NA	Intergenic	NA	NA								
0.79355-7	chr15	41913463	41913962	+	0	NA	Intergenic	CpG	-38898	NM_001164273	23269	Hs.187569	NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MGA, MAX dimerization protein	protein-coding
0.0966115-7	chr12	48152632	48153131	+	0	NA	promoter-TSS (NM_006105)	promoter-TSS (NM_006105)	8	NM_001098531	10411	Hs.8578	NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
0.291884-11	chr9	93617369	93617868	+	0	NA	intron (NM_001135052, intron 3 of 12)	intron (NM_001135052, intron 3 of 12)	27916	NM_001174167	6850	Hs.371720	NM_003177	ENSG00000165025	SYK	p72-Syk	spleen associated tyrosine kinase	protein-coding
0.438316-9	chr13	46463646	46464145	+	0	NA	Intergenic	Intergenic	-38049	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
20.2457-2	chr7	70600762	70601261	+	0	NA	intron (NM_022479, intron 1 of 10)	intron (NM_022479, intron 1 of 10)	3488	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
2.18963-21	chr13	110631447	110631946	+	0	NA	Intergenic	L1MD3|LINE|L1	-73936	NR_126387	104355146	Hs.508690	NR_126387	ENSG00000231428	LINC00396	-	long intergenic non-protein coding RNA 396	ncRNA
1.64309-10	chrX	119443285	119443784	+	0	NA	intron (NM_017938, intron 1 of 9)	(TC)n|Simple_repeat|Simple_repeat	1857	NM_001104544	55026	Hs.437563	NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
1.53663-32	chr6	82705137	82705636	+	0	NA	Intergenic	Intergenic	-181477	NR_126363	101928770	Hs.586239	NR_126363	ENSG00000224995	LINC01526	Lnc-FAM46A-1	long intergenic non-protein coding RNA 1526	ncRNA
0.777937-11	chr4	109093636	109094135	+	0	NA	non-coding (NR_029373, exon 1 of 3)	non-coding (NR_029373, exon 1 of 3)	609	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
13.4775	chr8	91997366	91997865	+	0	NA	promoter-TSS (NM_001190972)	promoter-TSS (NM_001190972)	-130	NM_001190972	100127983	Hs.733266	NM_001190972	ENSG00000253250	C8orf88	-	chromosome 8 open reading frame 88	protein-coding
14.2829-3	chr1	246701054	246701553	+	0	NA	Intergenic	LTR9|LTR|ERV1	-13714	NR_040002	255654	Hs.407570	NR_040002	ENSG00000242042	LINC01743	-	long intergenic non-protein coding RNA 1743	ncRNA
1.03474-15	chrUn_gl000225	18791	19290	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
4.28291-3	chr2	3720476	3720975	+	0	NA	intron (NM_018436, intron 2 of 11)	L2b|LINE|L2	14939	NM_018436	55821	Hs.97899	NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
4.21361-3	chr2	207287782	207288281	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-20337	NM_003812	8745	Hs.370287	NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
0.979971-8	chr18	11553210	11553709	+	0	NA	Intergenic	Intergenic	-56098	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
28.1816-3	chr7	24534086	24534585	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-78630	NM_016447	51678	Hs.533355	NM_016447	ENSG00000105926	MPP6	PALS2|VAM-1|VAM1|p55T	membrane palmitoylated protein 6	protein-coding
0.540393-6	chr7	13590584	13591083	+	0	NA	Intergenic	Intergenic	435306	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
1.09579-14	chr4	140970295	140970794	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	104689	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
3.96856-11	chr5	6573622	6574121	+	0	NA	Intergenic	MER89|LTR|ERV1	-8378	NR_024423	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
0.589858-26	chr2	60778364	60778863	+	0	NA	intron (NM_138559, intron 1 of 4)	CpG	2020	NM_018014	53335	Hs.370549	NM_018014	ENSG00000119866	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A	protein-coding
2.16096-4	chr5	176411602	176412101	+	0	NA	intron (NM_001199298, intron 1 of 14)	SVA_A|Other|Other	21592	NM_016290	51720	Hs.232721	NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
6.34512-10	chr3	78783133	78783632	+	0	NA	intron (NM_002941, intron 5 of 30)	intron (NM_002941, intron 5 of 30)	285227	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding
0.535477-4	chr9	112665765	112666264	+	0	NA	intron (NM_001037293, intron 4 of 6)	intron (NM_001037293, intron 4 of 6)	123437	NM_007203	445815	Hs.591908	NM_007203	ENSG00000157654	PALM2-AKAP2	AKAP2	PALM2-AKAP2 readthrough	protein-coding
0.584886-6	chr1	156474963	156475462	+	0	NA	Intergenic	CpG	-4578	NM_005920	4209	Hs.314327	NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
7.47147-15	chr1	222183573	222184072	+	0	NA	Intergenic	Intergenic	-169814	NR_125989	101929771	Hs.557001	NR_125989	ENSG00000227925	LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
0.395292-3	chrUn_gl000222	133467	133966	+	0	NA	Intergenic	Intergenic	-44406	NR_037925	647476	Hs.274541	NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
12.9843	chr18	70049216	70049715	+	0	NA	Intergenic	L1PA15|LINE|L1	162258	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
2.8735-8	chr5	94498852	94499351	+	0	NA	intron (NM_024717, intron 1 of 22)	intron (NM_024717, intron 1 of 22)	-81531	NM_001002796	79772	Hs.591248	NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
0.0174066-21	chr17	62957839	62958338	+	0	NA	Intergenic	Intergenic	13615	NR_026903	201283	Hs.396447	NM_153032	ENSG00000214174	AMZ2P1	-	archaelysin family metallopeptidase 2 pseudogene 1	pseudo
16.1798-12	chr4	130059928	130060427	+	0	NA	Intergenic	Intergenic	42895	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
5.83359-13	chr9	33473730	33474229	+	0	NA	promoter-TSS (NM_022917)	promoter-TSS (NM_022917)	-38	NM_139235	65083	Hs.493709	NM_022917	ENSG00000165271	NOL6	NRAP|UTP22|bA311H10.1	nucleolar protein 6	protein-coding
0.710923	chr9	19557261	19557760	+	0	NA	intron (NM_001193288, intron 5 of 8)	LTR22C|LTR|ERVK	148585	NM_001010887	340485	Hs.41379	NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
4.04504-6	chr16	54964734	54965233	+	0	NA	promoter-TSS (NM_001252197)	promoter-TSS (NM_001252197)	-128	NM_005853	10265	Hs.435730	NM_005853	ENSG00000176842	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
0.109954-13	chr5	149833787	149834286	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4717	NM_001025071	6208	Hs.744846	NM_005617	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
6.81937-4	chr14	104061639	104062396	+	0	NA	Intergenic	Intergenic	32723	NM_032374	84334	Hs.598441	NM_032374	ENSG00000256053	APOPT1	APOP|APOP1|C14orf153	apoptogenic 1, mitochondrial	protein-coding
5.01689-7	chr15	64302887	64303386	+	0	NA	intron (NM_014326, intron 2 of 11)	intron (NM_014326, intron 2 of 11)	35385	NM_014326	23604	Hs.237886	NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
0.163737-30	chr1	110753588	110754087	+	0	NA	non-coding (NR_036437, exon 1 of 5)	non-coding (NR_036437, exon 1 of 5)	501	NM_004978	3749	Hs.153521	NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
11.8376	chr9	118971209	118971708	+	0	NA	intron (NM_002581, intron 3 of 21)	intron (NM_002581, intron 3 of 21)	55387	NM_002581	5069	Hs.643599	NM_002581	ENSG00000182752	PAPPA	ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1	pappalysin 1	protein-coding
0.268721-17	chr5	773478	773977	+	0	NA	Intergenic	Intergenic	77374	NM_024786	79844	Hs.654874	NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
0.109954-21	chr16	29874235	29874734	+	0	NA	promoter-TSS (NR_024370)	promoter-TSS (NR_024370)	125	NM_006319	10423	Hs.121549	NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
1.22053-3	chr2	121985288	121985787	+	0	NA	intron (NM_014553, intron 13 of 14)	intron (NM_014553, intron 13 of 14)	57241	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
1.92465-10	chr1	182758419	182759036	+	0	NA	5' UTR (NM_001200056, exon 1 of 13)	5' UTR (NM_001200056, exon 1 of 13)	143	NM_030769	80896	Hs.496969	NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
2.99296-19	chr7	135194681	135195180	+	0	NA	promoter-TSS (NM_001190850)	promoter-TSS (NM_001190850)	-55	NM_001190847	4850	Hs.490224	NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
0.352691-2	chr7	128171108	128171607	+	0	NA	Intergenic	CpG	54574	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
1.63676	chr9	35162204	35162703	+	0	NA	intron (NM_001330653, intron 1 of 39)	intron (NM_001330653, intron 1 of 39)	464	NM_006377	10497	Hs.493791	NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2	unc-13 homolog B	protein-coding
1.63043-5	chr9	124861529	124862028	+	0	NA	Intergenic	Intergenic	-5893	NM_001139442	158135	Hs.438937	NM_194252	ENSG00000175764	TTLL11	C9orf20|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
6.34512-11	chr1	180198711	180199210	+	0	NA	promoter-TSS (NM_033343)	promoter-TSS (NM_033343)	-473	NM_033343	89884	Hs.658487	NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
4.32974	chr20	21377608	21378107	+	0	NA	exon (NM_033176, exon 1 of 2)	exon (NM_033176, exon 1 of 2)	190	NM_033176	644524	Hs.456662	NM_033176	ENSG00000125816	NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
1.57391-15	chr5	173042871	173043370	+	0	NA	intron (NM_138369, intron 1 of 3)	intron (NM_138369, intron 1 of 3)	546	NM_001159651	91272	Hs.425091	NM_138369	ENSG00000145919	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
14.9485-5	chr18	70211367	70211866	+	0	NA	5' UTR (NM_182511, exon 1 of 5)	5' UTR (NM_182511, exon 1 of 5)	107	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
9.39302-13	chr5	14557343	14557842	+	0	NA	Intergenic	MER50|LTR|ERV1	-24299	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding
0.414361-6	chr11	13231822	13232321	+	0	NA	Intergenic	Intergenic	-67203	NM_001297724	406	Hs.65734	NM_001178	ENSG00000133794	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator like	protein-coding
0.574959-10	chr8	128521693	128522192	+	0	NA	Intergenic	L2c|LINE|L2	-27558	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
3.0103-5	chr2	136555037	136555536	+	0	NA	intron (NM_002299, intron 13 of 16)	intron (NM_002299, intron 13 of 16)	-22475	NR_045486	100507600	Hs.662020	NR_045486	ENSG00000226806	LOC100507600	-	uncharacterized LOC100507600	ncRNA
22.4795	chr14	86339327	86339826	+	0	NA	Intergenic	Intergenic	-61446	NR_110155	101928767	Hs.536380	NR_110155		LOC101928767	-	uncharacterized LOC101928767	ncRNA
0.25028-29	chr2	3652660	3653159	+	0	NA	promoter-TSS (NM_001255986)	promoter-TSS (NM_001255986)	-733	NM_001255986	78989	Hs.32603	NM_024027	ENSG00000118004	COLEC11	3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
18.8606-2	chr1	33896448	33896947	+	0	NA	Intergenic	CpG	-41535	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
2.41088-2	chr16	24621345	24621844	+	0	NA	Intergenic	Intergenic	60789	NR_122072	400511	Hs.592028	NR_122072	ENSG00000224310	LINC01567	-	long intergenic non-protein coding RNA 1567	ncRNA
0.268721-66	chr11	34195802	34196301	+	0	NA	intron (NM_145804, intron 3 of 16)	CpG	68940	NM_001144030	55226	Hs.577281	NM_024662	ENSG00000135372	NAT10	ALP|NET43	N-acetyltransferase 10	protein-coding
1.07905-18	chr18	23584718	23585217	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	85644	NM_005637	6760	Hs.129261	NM_005637	ENSG00000141380	SS18	SSXT|SYT	SS18, nBAF chromatin remodeling complex subunit	protein-coding
0.741724-15	chr9	131126915	131127414	+	0	NA	intron (NR_031672, intron 2 of 2).3	intron (NR_031672, intron 2 of 2).3	-6434	NR_049743	81605	Hs.495229	NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
2.0204-17	chr2	195369519	195370018	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	160775	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
0.501223-12	chr11	8935936	8936435	+	0	NA	intron (NM_001206647, intron 3 of 4)	intron (NM_001206647, intron 3 of 4)	3446	NR_045417	56672	Hs.131180	NM_020642	ENSG00000166452	AKIP1	BCA3|C11orf17	A-kinase interacting protein 1	protein-coding
0.296531-52	chr2	42829163	42829662	+	0	NA	intron (NM_001330444, intron 3 of 15)	AluJb|SINE|Alu	33755	NM_001330444	57504	Hs.435413	NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
0.550241-34	chr7	139939034	139939533	+	0	NA	Intergenic	LTR16A|LTR|ERVL	62222	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
18.2681-5	chr3	183016533	183017032	+	0	NA	intron (NM_015078, intron 11 of 29)	intron (NM_015078, intron 11 of 29)	45750	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
0.385789-36	chr19	47538955	47539454	+	0	NA	intron (NM_001321086, intron 1 of 7)	intron (NM_001321086, intron 1 of 7)	617	NM_001321086	4861	Hs.79564	NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
0.721166-13	chr3	122862104	122862603	+	0	NA	intron (NM_006810, intron 11 of 16)	intron (NM_006810, intron 11 of 16)	-18288	NR_106960	102465667		NR_106960	ENSG00000065485	MIR7110	hsa-mir-7110	microRNA 7110	ncRNA
0.357404-8	chr1	78070847	78071346	+	0	NA	intron (NM_001308237, intron 4 of 13)	L1MA9|LINE|L1	77247	NM_015534	26009	Hs.480506	NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
0.877779	chr18	2070539	2071038	+	0	NA	Intergenic	Intergenic	500714	NM_001308401	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
0.245682-14	chr14	24424195	24424694	+	0	NA	promoter-TSS (NR_023922)	promoter-TSS (NR_023922)	-123	NR_023922	55449	Hs.569361	NM_018583	ENSG00000215256	DHRS4-AS1	AS1DHRS4|C14orf167|DHRS4AS1|PRO1488	DHRS4 antisense RNA 1	ncRNA
0.680339-37	chr6	168592765	168593264	+	0	NA	Intergenic	Intergenic	34183	NR_134590	105378137	Hs.549668	NR_134590	ENSG00000237987	LOC105378137	-	uncharacterized LOC105378137	ncRNA
3.12471-3	chr10	104151237	104151736	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2381	NM_001288724	4791	Hs.73090	NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
2.60428-6	chr7	127857928	127858427	+	0	NA	Intergenic	Intergenic	10252	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
0.0130484-28	chr7	69288178	69288677	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	224522	NM_015570	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
0.296531-36	chr19	36346881	36347380	+	0	NA	promoter-TSS (NM_032123)	promoter-TSS (NM_032123)	-680	NM_001329530	84063	Hs.145729	NM_032123	ENSG00000126259	KIRREL2	FILTRIN|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding
0.268721-61	chrX	153237491	153237990	+	0	NA	promoter-TSS (NM_005334)	promoter-TSS (NM_005334)	-251	NM_003492	8269	Hs.23119	NM_003492	ENSG00000177854	TMEM187	CXorf12|DXS9878E|ITBA1	transmembrane protein 187	protein-coding
7.21246	chr16	127905	128404	+	0	NA	promoter-TSS (NM_001015052)	promoter-TSS (NM_001015052)	-15	NM_001015052	4350	Hs.459596	NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
1.34304-10	chr1	3515811	3516310	+	0	NA	intron (NM_001409, intron 2 of 36)	intron (NM_001409, intron 2 of 36)	11999	NM_001409	1953	Hs.593645	NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
28.4164	chr7	123283797	123284296	+	0	NA	Intergenic	Intergenic	-11815	NM_207163	442721	Hs.592260	NM_207163	ENSG00000170807	LMOD2	C-LMOD|CLMOD	leiomodin 2	protein-coding
2.73273-9	chr14	70654474	70654973	+	0	NA	intron (NR_135825, intron 1 of 3)	intron (NR_135825, intron 1 of 3)	898	NR_135825	646548		NR_135825		LOC646548	-	ADAM metallopeptidase domain 20 pseudogene	pseudo
5.11449-6	chr12	54881204	54881703	+	0	NA	Intergenic	SVA_D|Other|Other	-10042	NM_005337	3071	Hs.182014	NM_005337	ENSG00000123338	NCKAP1L	HEM1	NCK associated protein 1 like	protein-coding
0.404816-11	chr7	139208032	139208531	+	0	NA	promoter-TSS (NM_001080511)	promoter-TSS (NM_001080511)	-393	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
0.925886-15	chr10	22716766	22717265	+	0	NA	Intergenic	Intergenic	9843	NR_036533	100499489	Hs.7444	NR_036533		LOC100499489	-	uncharacterized LOC100499489	ncRNA
0.540393-38	chr11	9286739	9287238	+	0	NA	promoter-TSS (NM_015213)	promoter-TSS (NM_015213)	-115	NM_015213	23258	Hs.501857	NM_015213	ENSG00000184014	DENND5A	RAB6IP1	DENN domain containing 5A	protein-coding
5.59091-5	chr11	127659646	127660145	+	0	NA	Intergenic	Intergenic	518930	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
1.71985-5	chr17	69434796	69435295	+	0	NA	Intergenic	Intergenic	-236725	NR_104152	101928165	Hs.407613	NR_104152	ENSG00000260785	CASC17	LINC00600	cancer susceptibility candidate 17 (non-protein coding)	ncRNA
0.145735-28	chr5	430970	431469	+	0	NA	intron (NM_020731, intron 9 of 11)	intron (NM_020731, intron 9 of 11)	12056	NR_126522	116349	Hs.446702	NM_138464	ENSG00000221990	EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
0.840728-11	chr17	64962115	64962614	+	0	NA	intron (NM_014405, intron 1 of 3)	intron (NM_014405, intron 1 of 3)	1384	NM_014405	27092	Hs.514423	NM_014405	ENSG00000075461	CACNG4	-	calcium voltage-gated channel auxiliary subunit gamma 4	protein-coding
6.32644-14	chr14	77488737	77489236	+	0	NA	Intergenic	Intergenic	6056	NM_024496	64207	Hs.179260	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein like	protein-coding
0.254883-55	chr13	51483922	51484421	+	0	NA	5' UTR (NM_024570, exon 1 of 11)	5' UTR (NM_024570, exon 1 of 11)	357	NM_024570	79621	Hs.306291	NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
2.30623-9	chr2	203499774	203500706	+	0	NA	exon (NM_173511, exon 1 of 8)	exon (NM_173511, exon 1 of 8)	339	NM_173511	150864	Hs.471130	NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
2.32844-6	chr9	132597394	132598253	+	0	NA	promoter-TSS (NM_016520)	promoter-TSS (NM_016520)	127	NM_001110303	10868	Hs.5452	NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
1.54282-15	chr8	81523523	81524022	+	0	NA	Intergenic	Intergenic	125324	NM_001105539	65986	Hs.591868	NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
0.385789-5	chr4	174958050	174958549	+	0	NA	Intergenic	Intergenic	183250	NR_125896	101928509	Hs.147719	NR_125896	ENSG00000248174	LOC101928509	-	uncharacterized LOC101928509	ncRNA
2.93282-5	chr6	139561726	139562225	+	0	NA	3' UTR (NM_153235, exon 10 of 10)	3' UTR (NM_153235, exon 10 of 10)	51233	NM_153235	167838	Hs.535820	NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
4.59671	chr11	46436008	46436507	+	0	NA	intron (NM_001300731, intron 14 of 16)	intron (NM_001300731, intron 14 of 16)	-28099	NM_000741	1132	Hs.248100	NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
0.362122-12	chr14	74868593	74869092	+	0	NA	Intergenic	Intergenic	23963	NM_001105579	646658	Hs.12400	NM_001105579	ENSG00000183379	SYNDIG1L	CAPUCIN|DSPC1|IFITMD4|TMEM90A	synapse differentiation inducing 1 like	protein-coding
0.76238-10	chr2	219156993	219157492	+	0	NA	promoter-TSS (NM_001321435)	promoter-TSS (NM_001321435)	58	NR_135643	64114	Hs.591605	NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
4.01209-3	chr5	156739411	156739910	+	0	NA	intron (NM_001037333, intron 11 of 30)	intron (NM_001037333, intron 11 of 30)	33069	NM_001001343	408263	Hs.437066	NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
13.439-4	chr5	173492680	173493179	+	0	NA	intron (NM_015980, intron 3 of 4)	intron (NM_015980, intron 3 of 4)	20322	NM_015980	51617	Hs.559412	NM_015980	ENSG00000170091	HMP19	-	HMP19 protein	protein-coding
1.80456-13	chr11	132862920	132863419	+	0	NA	intron (NM_001012393, intron 1 of 7)	intron (NM_001012393, intron 1 of 7)	-49506	NM_001319105	4978	Hs.4817	NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
5.52842-6	chr12	121790024	121790523	+	0	NA	promoter-TSS (NM_016237)	promoter-TSS (NM_016237)	-8	NM_001330489	51433	Hs.7101	NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
18.1531-6	chr18	39534876	39535375	+	0	NA	promoter-TSS (NM_002647)	promoter-TSS (NM_002647)	-38	NM_001308020	5289	Hs.464971	NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
3.99027-9	chr16	58545705	58546204	+	0	NA	non-coding (NR_040072, exon 14 of 14)	non-coding (NR_040072, exon 14 of 14)	-3429	NM_001160305	79918	Hs.731691	NM_024860	ENSG00000103037	SETD6	-	SET domain containing 6	protein-coding
1.28427-13	chr4	186125021	186125520	+	0	NA	promoter-TSS (NM_001292033)	promoter-TSS (NM_001292033)	-88	NM_020827	57587	Hs.535734	NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
1.98596-3	chr11	124574746	124575245	+	0	NA	Intergenic	SVA_D|Other|Other	-28796	NM_001199922	54414	Hs.10056	NM_018978	ENSG00000110013	SIAE	AIS6|CSE-C|CSEC|LSE|YSG2	sialic acid acetylesterase	protein-coding
2.1254-3	chr6	167785236	167785735	+	0	NA	Intergenic	Intergenic	12513	NM_004610	6953	Hs.351	NM_004610	ENSG00000203690	TCP10	TCP10A	t-complex 10	protein-coding
0.76756-9	chr16	11591053	11591552	+	0	NA	Intergenic	Intergenic	32186	NR_110907	101927131	Hs.569654	NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
1.04025	chr12	13152751	13153250	+	0	NA	promoter-TSS (NR_002774)	promoter-TSS (NR_002774)	243	NM_015987	50865	Hs.642618	NM_015987	ENSG00000013583	HEBP1	HBP|HEBP	heme binding protein 1	protein-coding
0.90444-12	chr14	66100824	66101323	+	0	NA	intron (NR_038170, intron 6 of 10)	SVA_D|Other|Other	163253	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
10.2641	chr1	97748083	97748582	+	0	NA	intron (NR_046590, intron 2 of 4)	L1PA15|LINE|L1	186853	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	ncRNA
17.122-8	chr12	10513587	10514086	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-2532	NR_120430	101928100	Hs.638425	NR_120430	ENSG00000245648	LOC101928100	-	uncharacterized LOC101928100	ncRNA
3.05395-4	chr2	95872887	95873386	+	0	NA	Intergenic	CpG	41974	NM_001291604	7549	Hs.590916	NM_021088	ENSG00000275111	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
1.14639-11	chr9	108177597	108178096	+	0	NA	intron (NM_001330731, intron 15 of 15)	intron (NM_001330731, intron 15 of 15)	-32469	NM_001145313	83856	Hs.136901	NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
2.73273-10	chr4	95679273	95679772	+	0	NA	promoter-TSS (NR_121610)	promoter-TSS (NR_121610)	394	NM_001203	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
0.315171-22	chr12	51013890	51014389	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	115371	NM_173602	57609	Hs.505516	NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
8.76148-10	chr18	14236372	14236871	+	0	NA	Intergenic	MER61C|LTR|ERV1	57525	NR_040113	440482	Hs.632352	NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
12.0135-4	chr20	24138973	24139472	+	0	NA	Intergenic	Intergenic	-41181	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
2.28413-6	chr20	60227974	60228473	+	0	NA	intron (NM_001252339, intron 1 of 14)	SVA_D|Other|Other	53406	NM_001252339	1002	Hs.473231	NM_001794	ENSG00000179242	CDH4	CAD4|R-CAD|RCAD	cadherin 4	protein-coding
8.79426-19	chr6	20204275	20204774	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	8171	NM_001080480	154141	Hs.377830	NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
0.788339-27	chr12	58004938	58005437	+	0	NA	promoter-TSS (NR_046223)	promoter-TSS (NR_046223)	-31	NR_046223	115557	Hs.61581	NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor 25	protein-coding
2.83997-2	chr19	17940813	17941312	+	0	NA	intron (NM_000215, intron 22 of 23)	intron (NM_000215, intron 22 of 23)	-8679	NM_005543	3640	Hs.37062	NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
1.45694-13	chr4	165136242	165136741	+	0	NA	intron (NM_001166373, intron 1 of 7)	LTR1|LTR|ERV1	-17628	NM_012403	23520	Hs.661161	NM_012403		ANP32C	PP32R1	acidic nuclear phosphoprotein 32 family member C	protein-coding
0.34328-31	chr22	36902762	36903261	+	0	NA	promoter-TSS (NM_024955)	promoter-TSS (NM_024955)	79	NM_024955	80020	Hs.387601	NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
10.1278-6	chr8	21802059	21802558	+	0	NA	intron (NM_015024, intron 1 of 27)	SVA_B|Other|Other	25128	NM_015024	23039	Hs.172685	NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
0.123337-22	chr3	65857017	65857516	+	0	NA	intron (NM_015520, intron 1 of 24)	intron (NM_015520, intron 1 of 24)	-22225	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
9.1364-28	chr5	115780296	115780795	+	0	NA	3' UTR (NM_020796, exon 19 of 19)	3' UTR (NM_020796, exon 19 of 19)	-2649	NR_109879	101927233	Hs.732850	NR_109879	ENSG00000248445	SEMA6A-AS1	CTB-118N6.3	SEMA6A antisense RNA 1	ncRNA
0.0305075-69	chr5	176560526	176561025	+	0	NA	promoter-TSS (NM_022455)	promoter-TSS (NM_022455)	-58	NM_022455	64324	Hs.106861	NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
16.3827-5	chr21	36243686	36244185	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	17052	NM_001001890	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
1.12946-23	chr6	89284469	89284968	+	0	NA	Intergenic	Intergenic	-35630	NR_110867	101928936	Hs.533080	NR_110867		LOC101928936	-	uncharacterized LOC101928936	ncRNA
2.9243-9	chr9	5879478	5879977	+	0	NA	Intergenic	Intergenic	-11182	NM_005511	2315	Hs.154069	NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
1.71985-6	chr3	115502737	115503236	+	0	NA	Intergenic	CpG	160835	NM_001130064	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
2.30623-17	chr6	150921140	150921639	+	0	NA	intron (NM_001329799, intron 1 of 15)	CpG	388	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
12.7084	chr8	144585069	144585568	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	38302	NM_015117	23144	Hs.521915	NM_015117	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
7.85156-6	chr18	53447367	53447866	+	0	NA	Intergenic	CpG	139814	NR_110755	101927273	Hs.434335	NR_110755	ENSG00000260930	LINC01416	-	long intergenic non-protein coding RNA 1416	ncRNA
0.2365-10	chr17	77771384	77771883	+	0	NA	promoter-TSS (NM_020649)	promoter-TSS (NM_020649)	-718	NM_020649	57332	Hs.387258	NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
2.61219-14	chr7	99526804	99527303	+	0	NA	exon (NM_181538, exon 1 of 2)	exon (NM_181538, exon 1 of 2)	190	NM_181538	349149	Hs.647524	NM_181538	ENSG00000176402	GJC3	CX29|CX30.2|CX31.3|GJE1	gap junction protein gamma 3	protein-coding
0.296531-21	chr20	19998364	19998863	+	0	NA	5' UTR (NM_181527, exon 1 of 6)	5' UTR (NM_181527, exon 1 of 6)	174	NM_181527	51126	Hs.368783	NM_016100	ENSG00000173418	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
4.16801-2	chr2	27440049	27440548	+	0	NA	promoter-TSS (NM_001306079)	promoter-TSS (NM_001306079)	40	NM_004341	790	Hs.377010	NM_004341	ENSG00000084774	CAD	CDG1Z	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding
0.0744648-29	chr11	128318759	128319258	+	0	NA	Intergenic	Intergenic	73197	NM_001162422	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
3.63512-13	chr19	16327482	16327981	+	0	NA	intron (NM_001130524, intron 6 of 12)	L1PA13|LINE|L1	19066	NM_032493	8907	Hs.71040	NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A	adaptor related protein complex 1 mu 1 subunit	protein-coding
0.783135-23	chr3	148425973	148426616	+	0	NA	intron (NM_000685, intron 2 of 2)	intron (NM_000685, intron 2 of 2)	10636	NM_004835	185	Hs.477887	NM_000685	ENSG00000144891	AGTR1	AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R	angiotensin II receptor type 1	protein-coding
3.41035-2	chr7	91657142	91657641	+	0	NA	intron (NM_005751, intron 14 of 49)	SVA_A|Other|Other	87202	NM_147185	10142	Hs.651221	NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
9.87163-6	chr5	34075979	34076478	+	0	NA	intron (NR_037951, intron 1 of 8)	L1MB3|LINE|L1	-32857	NM_030945	114899	Hs.171929	NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and tumor necrosis factor related protein 3	protein-coding
2.94136-5	chr6	19535506	19536005	+	0	NA	Intergenic	Intergenic	85703	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
6.47817-9	chr2	232578404	232578903	+	0	NA	TTS (NM_001099285)	TTS (NM_001099285)	629	NR_128710	103504734		NR_128710	ENSG00000283475	MIR1244-4	hsa-mir-1244-4	microRNA 1244-4	ncRNA
2.97569-10	chr18	34944180	34944679	+	0	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	90006	NR_134588	105372068	Hs.569903	NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
5.21434-6	chr5	1315704	1316203	+	0	NA	Intergenic	Intergenic	-6461	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
4.89455-13	chr21	46198006	46198505	+	0	NA	intron (NM_001202489, intron 1 of 3)	intron (NM_001202489, intron 1 of 3)	23496	NM_182688	7327	Hs.529420	NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
0.070049-54	chr3	195808211	195808710	+	0	NA	intron (NM_001313965, intron 1 of 17)	CpG	501	NM_003234	7037	Hs.529618	NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
13.0277-2	chr8	135703446	135703945	+	0	NA	intron (NM_001289394, intron 1 of 16)	intron (NM_001289394, intron 1 of 16)	5106	NM_001174158	57623	Hs.446172	NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
0.540393-39	chr7	131339401	131339900	+	0	NA	Intergenic	Intergenic	-98274	NM_005397	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
0.0612309	chr10	119867699	119868198	+	0	NA	intron (NR_026940, intron 3 of 3)	intron (NR_026940, intron 3 of 3)	-61553	NM_001330167	22841	Hs.173656	NM_014904	ENSG00000107560	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2	protein-coding
26.4975-8	chr6	159191088	159191587	+	0	NA	intron (NM_001111077, intron 10 of 13)	intron (NM_001111077, intron 10 of 13)	-5552	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
32.8067	chr10	42863274	42863773	+	0	NA	promoter-TSS (NR_024380)	promoter-TSS (NR_024380)	-30	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
10.4239-3	chr12	75510357	75510856	+	0	NA	intron (NM_001260497, intron 2 of 4)	intron (NM_001260497, intron 2 of 4)	92922	NM_001260498	3747	Hs.27214	NM_139136	ENSG00000166006	KCNC2	KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
0.168249	chr22	39928676	39929175	+	0	NA	promoter-TSS (NM_194326)	promoter-TSS (NM_194326)	-65	NR_130151	91582	Hs.526933	NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
4.40093-8	chr8	134303007	134303506	+	0	NA	intron (NM_006096, intron 1 of 15)	intron (NM_006096, intron 1 of 15)	6291	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
8.79426-20	chr8	83574559	83575058	+	0	NA	Intergenic	L1PA16|LINE|L1	-249531	NR_134295	101927141	Hs.128557	NR_134295	ENSG00000254394	LOC101927141	-	uncharacterized LOC101927141	ncRNA
0.296531-50	chr9	130502881	130503380	+	0	NA	intron (NM_005489, intron 8 of 10)	AluSc8|SINE|Alu	-5502	NM_001252018	27433	Hs.444106	NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
0.366845-2	chr7	5717519	5718018	+	0	NA	intron (NR_046834, intron 1 of 2)	intron (NR_046834, intron 1 of 2)	2324	NR_046834	100874342	Hs.665728	NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
3.12471-4	chr11	4355140	4355639	+	0	NA	Intergenic	SVA_B|Other|Other	34227	NM_001005161	143496	Hs.447463	NM_001005161	ENSG00000221996	OR52B4	OR11-3	olfactory receptor family 52 subfamily B member 4 (gene/pseudogene)	protein-coding
0.070049-78	chr6	111196393	111196892	+	0	NA	intron (NM_001287216, intron 1 of 4)	CpG	655	NM_001287216	262	Hs.159118	NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
21.9382-2	chr1	108770331	108770830	+	0	NA	intron (NM_001143989, intron 13 of 14)	intron (NM_001143989, intron 13 of 14)	16123	NM_001143989	148545	Hs.511849	NM_152488	ENSG00000196427	NBPF4	-	neuroblastoma breakpoint family member 4	protein-coding
0.268721-54	chr17	40718811	40719310	+	0	NA	promoter-TSS (NM_198204)	promoter-TSS (NM_198204)	-18	NM_198204	6945	Hs.383019	NM_170607	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MLX, MAX dimerization protein	protein-coding
1.66853-2	chr9	139742190	139742689	+	0	NA	promoter-TSS (NM_001287342)	promoter-TSS (NM_001287342)	-829	NR_109808	29085	Hs.409834	NM_014172	ENSG00000054148	PHPT1	CGI-202|HEL-S-132P|HSPC141|PHP|PHP14	phosphohistidine phosphatase 1	protein-coding
1.83096-3	chr13	63218086	63218585	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	152490	NR_047029	100874176	Hs.402083	NR_047029		LINC00448	-	long intergenic non-protein coding RNA 448	ncRNA
4.29457-3	chr2	178437071	178437570	+	0	NA	Intergenic	Intergenic	-19796	NM_152517	150737	Hs.447659	NM_152517	ENSG00000196659	TTC30B	IFT70|IFT70B|fleer	tetratricopeptide repeat domain 30B	protein-coding
0.409586-37	chrX	108455316	108455815	+	0	NA	Intergenic	L1PA8|LINE|L1	157793	NR_106735	102464835		NR_106735	ENSG00000275110	MIR6087	hsa-mir-6087	microRNA 6087	ncRNA
3.5164-3	chr7	151216198	151217033	+	0	NA	5' UTR (NM_005614, exon 1 of 8)	5' UTR (NM_005614, exon 1 of 8)	395	NM_005614	6009	Hs.283521	NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog enriched in brain	protein-coding
0.856568-34	chr3	196466911	196467410	+	0	NA	intron (NM_002577, intron 1 of 14)	CpG	432	NM_002577	5062	Hs.518530	NM_002577	ENSG00000180370	PAK2	PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
2.00659-3	chr5	146834029	146834528	+	0	NA	intron (NM_001197294, intron 1 of 13)	intron (NM_001197294, intron 1 of 13)	-1018	NM_001387	1809	Hs.519659	NM_001387	ENSG00000113657	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase like 3	protein-coding
0.655015-8	chr2	198066633	198067132	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	4167	NR_135584	101927596		NR_135584	ENSG00000231621	LOC101927596	-	uncharacterized LOC101927596	ncRNA
4.58421-10	chr16	67969661	67970160	+	0	NA	exon (NM_002801, exon 4 of 8)	exon (NM_002801, exon 4 of 8)	870	NM_002801	5699	Hs.9661	NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|beta2i	proteasome subunit beta 10	protein-coding
15.8838	chr20	30709000	30709499	+	0	NA	intron (NM_014742, intron 1 of 17)	SVA_D|Other|Other	11940	NM_014742	9777	Hs.654665	NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
13.0892-2	chr3	183094902	183095401	+	0	NA	intron (NM_015078, intron 3 of 29)	L1PA8|LINE|L1	50906	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
1.60522-7	chr2	11295399	11295898	+	0	NA	non-coding (NR_104231, exon 1 of 8)	non-coding (NR_104231, exon 1 of 8)	150	NR_104231	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
1.83759-3	chr6	30698553	30699052	+	0	NA	exon (NM_001318875, exon 8 of 12).2	exon (NM_001318875, exon 8 of 12).2	9476	NM_001293212	203068	Hs.636480	NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
6.38272-11	chr5	177572925	177573424	+	0	NA	exon (NM_001288794, exon 9 of 12)	exon (NM_001288794, exon 9 of 12)	7787	NM_017838	55651	Hs.744074	NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
0.670192-15	chr9	140340371	140340870	+	0	NA	Intergenic	Intergenic	3918	NR_106964	102466223		NR_106964	ENSG00000165802	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
1.52427-16	chr14	62279492	62279991	+	0	NA	Intergenic	CpG	50666	NM_003082	6617	Hs.179312	NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
16.925-3	chr3	37558576	37559075	+	0	NA	intron (NM_002207, intron 9 of 27)	intron (NM_002207, intron 9 of 27)	65012	NM_002207	3680	Hs.113157	NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
10.5799-5	chr11	68977746	68978245	+	0	NA	Intergenic	Intergenic	-38965	NR_104161	338694	Hs.564235	NR_104161	ENSG00000261070	LOC338694	-	uncharacterized LOC338694	ncRNA
1.42668-6	chr5	9851593	9852092	+	0	NA	intron (NR_027112, intron 4 of 12)	intron (NR_027112, intron 4 of 12)	52094	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LINC02112	-	long intergenic non-protein coding RNA 2112	ncRNA
4.7237-7	chr1	15750718	15751217	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	-13971	NM_007272	11330	Hs.631869	NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
1.45087-16	chr2	16956170	16956669	+	0	NA	Intergenic	Intergenic	-109285	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding
0.555173-33	chr6	37484830	37485329	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	9955	NR_126057	100505530	Hs.582978	NM_001039791		LOC100505530	-	uncharacterized LOC100505530	ncRNA
8.66461-9	chr3	172365656	172366155	+	0	NA	intron (NM_020792, intron 1 of 4)	intron (NM_020792, intron 1 of 4)	63103	NM_001146276	57552	Hs.444099	NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
6.28932-6	chr1	36349151	36349650	+	0	NA	intron (NM_012199, intron 1 of 18)	CpG	604	NM_012199	26523	Hs.22867	NM_012199	ENSG00000092847	AGO1	EIF2C|EIF2C1|GERP95|Q99|hAgo1	argonaute 1, RISC catalytic component	protein-coding
1.93142-6	chr16	67957246	67957745	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	8283	NM_001907	1506	Hs.654546	NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
11.0073	chr6	18208102	18208601	+	0	NA	intron (NM_153042, intron 12 of 17)	intron (NM_153042, intron 12 of 17)	52732	NM_153042	221656	Hs.709336	NM_153042	ENSG00000165097	KDM1B	AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2	lysine demethylase 1B	protein-coding
1.66216-6	chr16	85363415	85363914	+	0	NA	Intergenic	Intergenic	-23733	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
1.85087-19	chr20	17514001	17514500	+	0	NA	intron (NM_001278608, intron 3 of 9)	MLT1H2|LTR|ERVL-MaLR	-2236	NM_001195	631	Hs.129702	NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
5.0724-12	chr16	12520001	12520500	+	0	NA	intron (NM_032167, intron 18 of 20)	MLT1I|LTR|ERVL-MaLR	-293928	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
22.5104	chr3	193923324	193923823	+	0	NA	intron (NR_125403, intron 1 of 2)	intron (NR_125403, intron 1 of 2)	523	NR_125404	100505920	Hs.436654	NR_125403	ENSG00000225742	LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
0.584886-16	chr2	27200935	27201434	+	0	NA	intron (NM_012326, intron 1 of 6)	intron (NM_012326, intron 1 of 6)	7945	NM_012326	22924	Hs.515860	NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
4.80172-10	chr11	86590957	86591456	+	0	NA	intron (NR_120592, intron 2 of 2)	SVA_D|Other|Other	-22210	NR_045004	8587	Hs.741959	NR_045004	ENSG00000255203	OR7E2P	OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94	olfactory receptor family 7 subfamily E member 2 pseudogene	pseudo
2.81498-10	chr11	102323103	102323602	+	0	NA	promoter-TSS (NR_135053)	promoter-TSS (NR_135053)	-298	NR_135053	101928424	Hs.647210	NR_135053	ENSG00000255337	LOC101928424	-	uncharacterized LOC101928424	ncRNA
1.26098-6	chr3	47612808	47613307	+	0	NA	intron (NM_006574, intron 3 of 4)	intron (NM_006574, intron 3 of 4)	7302	NM_001206943	10675	Hs.45127	NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
0.168249-24	chr19	56988632	56989131	+	0	NA	promoter-TSS (NM_001321356)	promoter-TSS (NM_001321356)	-111	NM_001321356	63934	Hs.676605	NM_022103	ENSG00000198046	ZNF667	MIPU1	zinc finger protein 667	protein-coding
19.7469	chr3	94696963	94697462	+	0	NA	intron (NR_015400, intron 3 of 7)	MSTB2|LTR|ERVL-MaLR	40105	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
16.038-9	chr11	129327170	129327669	+	0	NA	Intergenic	Intergenic	81538	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
12.2915-8	chr1	199187043	199187542	+	0	NA	Intergenic	L1PA13|LINE|L1	-199199	NR_110525	102800316	Hs.568480	NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
5.51294-5	chr3	178231501	178232000	+	0	NA	Intergenic	Intergenic	-22336	NM_181361	10242	Hs.478368	NM_005832	ENSG00000197584	KCNMB2	-	potassium calcium-activated channel subfamily M regulatory beta subunit 2	protein-coding
1.39063-8	chr8	9221845	9222344	+	0	NA	Intergenic	SVA_D|Other|Other	39533	NR_040039	157273	Hs.650222	NR_040039	ENSG00000254235	LOC157273	-	uncharacterized LOC157273	ncRNA
4.00117-4	chr16	761569	762068	+	0	NA	Intergenic	Intergenic	-3355	NM_024042	79006	Hs.533772	NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
0.414361-16	chr10	31423091	31423590	+	0	NA	Intergenic	Intergenic	-53472	NR_134478	101929352	Hs.209289	NR_134478		LOC101929352	-	uncharacterized LOC101929352	ncRNA
7.87812-13	chr2	170675079	170675578	+	0	NA	intron (NM_014168, intron 4 of 6)	MIR|SINE|MIR	6113	NM_001293186	29081	Hs.470553	NM_014168	ENSG00000138382	METTL5	HSPC133	methyltransferase like 5	protein-coding
10.5799-10	chr8	99057393	99057892	+	0	NA	intron (NM_000989, intron 1 of 4)	CpG-25887	176	NM_000989	6156	Hs.400295	NM_000989	ENSG00000156482	RPL30	L30	ribosomal protein L30	protein-coding
2.40332	chr6	119398706	119399385	+	0	NA	intron (NM_001100411, intron 1 of 16)	intron (NM_001100411, intron 1 of 16)	767	NM_024581	79632	Hs.443789	NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
1.39063-12	chr1	187036246	187036745	+	0	NA	Intergenic	MIR|SINE|MIR	-25479	NR_126347	104169671		NR_126347		LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA
8.47712-11	chr1	203449822	203450321	+	0	NA	intron (NM_002725, intron 1 of 2)	intron (NM_002725, intron 1 of 2)	5188	NM_002725	5549	Hs.632481	NM_002725	ENSG00000188783	PRELP	MST161|MSTP161|SLRR2A	proline and arginine rich end leucine rich repeat protein	protein-coding
6.27088-5	chr1	56159957	56160456	+	0	NA	Intergenic	Intergenic	468892	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
1.29011-12	chr19	49990389	49990888	+	0	NA	promoter-TSS (NR_073024)	promoter-TSS (NR_073024)	-173	NM_012423	23521	Hs.523185	NM_012423	ENSG00000142541	RPL13A	L13A|TSTA1	ribosomal protein L13a	protein-coding
2.52588-11	chr11	61103596	61104095	+	0	NA	intron (NM_015533, intron 2 of 17)	intron (NM_015533, intron 2 of 17)	-3161	NM_001923	1642	Hs.290758	NM_001923	ENSG00000167986	DDB1	DDBA|UV-DDB1|XAP1|XPCE|XPE|XPE-BF	damage specific DNA binding protein 1	protein-coding
5.62249-2	chr3	118993779	118994278	+	0	NA	intron (NR_046574, intron 3 of 3)	intron (NR_046574, intron 3 of 3)	-19192	NM_020754	57514	Hs.668218	NM_020754	ENSG00000031081	ARHGAP31	AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
11.2901-4	chr1	184179083	184179582	+	0	NA	Intergenic	Intergenic	158547	NM_001300764	116461	Hs.548197	NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
6.23423-7	chr12	3420124	3420623	+	0	NA	Intergenic	Intergenic	-70142	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
6.43974-2	chr1	11029570	11030069	+	0	NA	intron (NM_001170754, intron 3 of 12)	L2a|LINE|L2	12275	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
4.7237-10	chr4	141207576	141208075	+	0	NA	intron (NR_033939, intron 4 of 4)	intron (NR_033939, intron 4 of 4)	29385	NM_032547	60592	Hs.480815	NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
1.27844	chr20	31124643	31125142	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	27130	NR_110619	101929698	Hs.638392	NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
17.0997	chr12	94414304	94414803	+	0	NA	Intergenic	Intergenic	-77171	NR_135017	105369911	Hs.577495	NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
0.5061-6	chr17	3791611	3792110	+	0	NA	intron (NM_172207, intron 1 of 15)	MIR|SINE|MIR	2177	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
2.04815-16	chr17	71192605	71193104	+	0	NA	exon (NM_018714, exon 2 of 14)	exon (NM_018714, exon 2 of 14)	3681	NM_018714	9382	Hs.103555	NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
0.310503-35	chr1	62850194	62850693	+	0	NA	Intergenic	MIRb|SINE|MIR	-51532	NM_001017415	7398	Hs.35086	NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
0.390538-8	chr17	2296880	2297379	+	0	NA	intron (NM_020310, intron 4 of 5)	CpG	7129	NM_020310	4335	Hs.626579	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
2.58061-5	chr7	6120886	6121385	+	0	NA	Intergenic	CpG	-22275	NM_014413	27102	Hs.520205	NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
2.50264-6	chr3	168388816	168389315	+	0	NA	intron (NR_021485, intron 5 of 15)	LTR9|LTR|ERV1	119423	NR_030294	693136		NR_030294	ENSG00000207717	MIR551B	MIRN551B|mir-551b	microRNA 551b	ncRNA
11.152	chr14	81866518	81867017	+	0	NA	intron (NM_033104, intron 1 of 5)	intron (NM_033104, intron 1 of 5)	26789	NM_033104	85439	Hs.14248	NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
0.0174066-11	chr6	159239809	159240308	+	0	NA	promoter-TSS (NM_003379)	promoter-TSS (NM_003379)	398	NM_001111077	7430	Hs.487027	NM_003379	ENSG00000092820	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
30.2182-3	chr1	246038211	246038710	+	0	NA	intron (NM_001167740, intron 8 of 11)	intron (NM_001167740, intron 8 of 11)	542254	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
0.132283-40	chr3	140951065	140951564	+	0	NA	intron (NM_001282728, intron 1 of 6)	CpG	647	NM_001282728	92370	Hs.657887	NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
4.50997-10	chr3	172586340	172586908	+	0	NA	Intergenic	L2c|LINE|L2	118149	NM_018098	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
4.15669-7	chr7	156443296	156443795	+	0	NA	intron (NR_131778, intron 3 of 8)	L2b|LINE|L2	7050	NR_131778	140545	Hs.446194	NM_030936	ENSG00000105982	RNF32	FKSG33|HSD15|LMBR2	ring finger protein 32	protein-coding
14.7366-2	chr3	160549140	160549639	+	0	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	-10612	NM_001317912	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
0.296531	chr11	115810289	115810788	+	0	NA	Intergenic	Intergenic	-179620	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
0.496351-31	chr8	42629270	42629769	+	0	NA	Intergenic	Intergenic	-5590	NM_001199279	8973	Hs.103128	NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
5.19993-2	chr13	98628785	98629284	+	0	NA	exon (NM_002271, exon 4 of 29)	exon (NM_002271, exon 4 of 29)	23105	NM_002271	3843	Hs.712598	NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
6.09065-4	chr2	23755503	23756002	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	147454	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
2.11832-16	chr5	79551691	79552190	+	0	NA	promoter-TSS (NM_178276)	promoter-TSS (NM_178276)	-39	NR_126061	256987	Hs.288232	NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
1.08463	chr15	29923773	29924272	+	0	NA	Intergenic	L1MB4|LINE|L1	-43117	NR_135221	100130111	Hs.525720	NR_135221	ENSG00000256802	LOC100130111	-	uncharacterized LOC100130111	ncRNA
10.4528	chr3	113932600	113933400	+	0	NA	Intergenic	Intergenic	-14746	NM_001282563	1814	Hs.121478	NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
2.99296-8	chr3	196669144	196669643	+	0	NA	promoter-TSS (NM_007362)	promoter-TSS (NM_007362)	71	NM_007362	22916	Hs.591671	NM_007362	ENSG00000114503	NCBP2	CBC2|CBP20|NIP1|PIG55	nuclear cap binding protein subunit 2	protein-coding
1.00727-9	chr1	93425978	93426477	+	0	NA	intron (NM_001006605, intron 1 of 4)	intron (NM_001006605, intron 1 of 4)	852	NM_001252273	388650	Hs.180946	NM_001006605	ENSG00000154511	FAM69A	-	family with sequence similarity 69 member A	protein-coding
1.37272-10	chr12	6222797	6223296	+	0	NA	intron (NM_000552, intron 3 of 51)	intron (NM_000552, intron 3 of 51)	10795	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
1.19186-29	chr14	64804533	64805032	+	0	NA	non-coding (NR_073496, exon 1 of 8)	non-coding (NR_073496, exon 1 of 8)	486	NR_073496	2100	Hs.660607	NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2	estrogen receptor 2	protein-coding
6.09065-2	chr6	5471856	5472355	+	0	NA	intron (NM_006567, intron 4 of 6)	intron (NM_006567, intron 4 of 6)	-13797	NR_125848	101927972	Hs.668417	NR_125846	ENSG00000269985	LOC101927972	-	uncharacterized LOC101927972	ncRNA
38.7615	chr1	40439064	40439563	+	0	NA	Intergenic	Intergenic	18529	NR_109896	84879	Hs.655177	NM_032793	ENSG00000168389	MFSD2A	MCPH15|MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
2.64401-7	chr2	42949516	42950015	+	0	NA	intron (NM_001330444, intron 14 of 15)	intron (NM_001330444, intron 14 of 15)	41636	NM_148962	165140	Hs.168439	NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
2.43364-22	chr4	57773797	57774296	+	0	NA	promoter-TSS (NM_005612)	promoter-TSS (NM_005612)	4	NM_005612	5978	Hs.307836	NM_005612	ENSG00000084093	REST	NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
0.291884-38	chr17	37886526	37887025	+	0	NA	promoter-TSS (NM_032339)	promoter-TSS (NM_032339)	41	NM_032339	84299	Hs.333526	NM_032339	ENSG00000141741	MIEN1	C17orf37|C35|ORB3|RDX12|XTP4	migration and invasion enhancer 1	protein-coding
0.366845-14	chr6	164551147	164551646	+	0	NA	Intergenic	Intergenic	-458880	NR_134620	102724152	Hs.738183	NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
3.94695-2	chr2	230787234	230787733	+	0	NA	promoter-TSS (NM_001284216)	promoter-TSS (NM_001284216)	276	NM_174899	130888	Hs.140666	NM_174899	ENSG00000153832	FBXO36	Fbx36	F-box protein 36	protein-coding
1.36677-7	chr11	68242359	68242858	+	0	NA	intron (NM_001164163, intron 1 of 22)	SVA_C|Other|Other	14422	NM_001164160	55291	Hs.503022	NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
1.37272-19	chr16	31044514	31045013	+	0	NA	promoter-TSS (NM_004604)	promoter-TSS (NM_004604)	-49	NM_004604	6810	Hs.83734	NM_004604	ENSG00000103496	STX4	STX4A|p35-2	syntaxin 4	protein-coding
0.783135-11	chr10	65646858	65647357	+	0	NA	Intergenic	LTR33|LTR|ERVL	-365272	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
12.426	chr1	3609037	3609536	+	0	NA	intron (NM_001126242, intron 1 of 10)	intron (NM_001126242, intron 1 of 10)	2050	NM_001204189	7161	Hs.192132	NM_005427	ENSG00000078900	TP73	P73	tumor protein p73	protein-coding
2.61219-4	chr18	46414325	46414824	+	0	NA	Intergenic	MIRc|SINE|MIR	54603	NM_001190823	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
1.51195-14	chr8	139943109	139943608	+	0	NA	Intergenic	Intergenic	-17109	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
0.070049-69	chr5	73082193	73082692	+	0	NA	intron (NM_001177693, intron 7 of 35)	intron (NM_001177693, intron 7 of 35)	-26901	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
0.385789-22	chr4	8626554	8627053	+	0	NA	Intergenic	CpG	32416	NM_001014448	8532	Hs.61995	NM_003652	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
13.536-4	chr14	50653603	50654102	+	0	NA	intron (NM_006939, intron 5 of 22)	AluJr|SINE|Alu	44559	NM_006939	6655	Hs.291533	NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
5.0307-11	chr5	14756234	14756733	+	0	NA	intron (NM_054027, intron 3 of 11)	intron (NM_054027, intron 3 of 11)	43680	NR_046285	100130744	Hs.660550	NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
9.24453-19	chr10	76784412	76784911	+	0	NA	intron (NM_012330, intron 16 of 17)	intron (NM_012330, intron 16 of 17)	33611	NM_001003892	338599	Hs.535090	NM_001003892	ENSG00000188716	DUPD1	DUSP27|FMDSP	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding
4.31798-7	chr5	112547867	112548366	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	82496	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
38.8941	chr8	8360847	8361346	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-121752	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related kinase activating pseudokinase 1	protein-coding
9.39302-14	chr5	169010446	169010945	+	0	NA	promoter-TSS (NM_001329641)	promoter-TSS (NM_001329641)	57	NM_001329643	54908	Hs.368710	NM_017785	ENSG00000040275	SPDL1	CCDC99	spindle apparatus coiled-coil protein 1	protein-coding
0.0568285-6	chr14	77428498	77428997	+	0	NA	non-coding (NR_133913, exon 2 of 3)	non-coding (NR_133913, exon 2 of 3)	2766	NR_133913	105370578	Hs.574184	NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
1.59894	chr10	60145038	60145537	+	0	NA	non-coding (NR_073073, exon 1 of 8)	non-coding (NR_073073, exon 1 of 8)	384	NM_001270782	7019	Hs.594250	NM_003201	ENSG00000108064	TFAM	MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
0.301184-11	chr2	59404776	59405275	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-39818	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
0.0436481-21	chr22	20117717	20118216	+	0	NA	Intergenic	Intergenic	-1398	NM_001185024	29801	Hs.63128	NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type containing 8	protein-coding
9.39302-27	chr6	16146272	16146771	+	0	NA	intron (NM_013262, intron 6 of 6)	intron (NM_013262, intron 6 of 6)	4734	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
14.437-6	chr15	63612616	63613115	+	0	NA	TTS (NR_135511)	TTS (NR_135511)	43116	NM_031301	83464	Hs.511703	NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688	aph-1 homolog B, gamma-secretase subunit	protein-coding
1.73277-9	chr8	138537813	138538312	+	0	NA	Intergenic	Intergenic	-112231	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
12.6761-7	chr9	84304372	84304871	+	0	NA	promoter-TSS (NR_109772)	promoter-TSS (NR_109772)	-7	NR_109772	101927502	Hs.528628	NR_109772	ENSG00000233926	LOC101927502	-	uncharacterized LOC101927502	ncRNA
6.92504-16	chr2	232645543	232646042	+	0	NA	promoter-TSS (NM_001282949)	promoter-TSS (NM_001282949)	245	NR_110994	5147	Hs.516808	NM_002601	ENSG00000156973	PDE6D	JBTS22|PDED	phosphodiesterase 6D	protein-coding
5.40608-5	chr2	237509495	237509994	+	0	NA	Intergenic	Intergenic	31364	NM_020311	57007	Hs.471751	NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
7.01147-3	chr8	101859565	101860064	+	0	NA	Intergenic	Intergenic	102985	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
0.070049-30	chr4	105315902	105316401	+	0	NA	Intergenic	Intergenic	-95971	NR_125926	101929468	Hs.480435	NR_125926	ENSG00000245384	LOC101929468	-	uncharacterized LOC101929468	ncRNA
2.48721-19	chr7	25894186	25894685	+	0	NA	Intergenic	Intergenic	95171	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
0.118872-25	chr15	101210748	101211247	+	0	NA	Intergenic	Intergenic	68242	NM_024708	140460	Hs.31845	NM_024708	ENSG00000183475	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
4.20216-3	chr14	93388928	93389427	+	0	NA	promoter-TSS (NM_001301690)	promoter-TSS (NM_001301690)	-268	NM_001301690	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A	protein-coding
1.33122-17	chr6	133134225	133134724	+	0	NA	Intergenic	Intergenic	-1234	NM_001016	6206	Hs.546289	NM_001016	ENSG00000112306	RPS12	S12	ribosomal protein S12	protein-coding
17.8516-4	chr13	51609148	51609647	+	0	NA	intron (NR_003923, intron 3 of 16)	intron (NR_003923, intron 3 of 16)	30896	NR_003923	2974	Hs.411573	NM_004129	ENSG00000123201	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo
2.61219-28	chr16	28956790	28957289	+	0	NA	Intergenic	Intergenic	-5279	NM_032815	84901	Hs.513470	NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T-cells 2 interacting protein	protein-coding
25.3462-2	chr20	12447101	12447600	+	0	NA	Intergenic	L1PB4|LINE|L1	470261	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
10.2273	chr19	5954615	5955114	+	0	NA	intron (NM_003624, intron 2 of 16)	intron (NM_003624, intron 2 of 16)	23456	NM_007322	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
1.77178-6	chr16	67564244	67564743	+	0	NA	intron (NM_001193523, intron 1 of 21)	intron (NM_001193523, intron 1 of 21)	953	NM_001193523	79567	Hs.152717	NM_024519	ENSG00000039523	FAM65A	-	family with sequence similarity 65 member A	protein-coding
1.53663-17	chr14	30914563	30915062	+	0	NA	Intergenic	Intergenic	-113517	NM_017769	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
6.75718-3	chr2	189433173	189433672	+	0	NA	intron (NM_001252668, intron 7 of 12)	MER102b|DNA|hAT-Charlie	221409	NM_052952	116093	Hs.470892	NM_052952	ENSG00000174325	DIRC1	-	disrupted in renal carcinoma 1	protein-coding
13.4199-4	chr2	139641563	139642062	+	0	NA	Intergenic	MER130|Unknown?|Unknown?	-13082	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
1.66216-7	chr15	90039307	90039806	+	0	NA	intron (NM_016321, intron 1 of 10)	CpG	258	NM_001321041	51458	Hs.459284	NM_016321	ENSG00000140519	RHCG	C15orf6|PDRC2|RHGK|SLC42A3	Rh family C glycoprotein	protein-coding
0.301184-25	chr7	94249968	94250467	+	0	NA	intron (NM_001346720, intron 5 of 11)	intron (NM_001346720, intron 5 of 11)	35304	NM_001346719	8910	Hs.371199	NM_003919	ENSG00000127990	SGCE	DYT11|ESG|epsilon-SG	sarcoglycan epsilon	protein-coding
2.00659-19	chr8	140717963	140718462	+	0	NA	Intergenic	CpG-26022	-2913	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
0.291884-30	chr12	26471423	26471922	+	0	NA	Intergenic	MIRc|SINE|MIR	123166	NM_005086	8082	Hs.183428	NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
0.241089-11	chr12	57482278	57482777	+	0	NA	promoter-TSS (NM_005967)	promoter-TSS (NM_005967)	-150	NM_005967	4665	Hs.159223	NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
4.89455-14	chr5	175733402	175733901	+	0	NA	intron (NM_001308195, intron 4 of 9)	SVA_F|Other|Other	-6497	NM_001308200	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO interacting motifs containing 1	protein-coding
14.5717-2	chr14	94362089	94362588	+	0	NA	Intergenic	Intergenic	-22902	NM_138344	90050	Hs.525550	NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding
1.03474-4	chr1	13435138	13435637	+	0	NA	intron (NM_001099850, intron 1 of 2).2	SVA_E|Other|Other	11384	NM_001300891	101929983		NM_001300891	ENSG00000274764	PRAMEF27	-	PRAME family member 27	protein-coding
4.27128	chr11	107992360	107993151	+	0	NA	intron (NM_000019, intron 1 of 11)	intron (NM_000019, intron 1 of 11)	497	NM_000019	38	Hs.232375	NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
3.93619-20	chr3	33111274	33111773	+	0	NA	intron (NM_001079811, intron 2 of 15)	L1PA15|LINE|L1	26770	NM_001039770	643853	Hs.443031	NM_001039770	ENSG00000188167	TMPPE	-	transmembrane protein with metallophosphoesterase domain	protein-coding
0.310503-42	chrX	118108313	118108812	+	0	NA	promoter-TSS (NM_001031855)	promoter-TSS (NM_001031855)	-15	NR_110311	79836	Hs.144266	NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
0.76756-21	chr11	63334465	63334964	+	0	NA	Intergenic	LTR43|LTR|ERV1	-3859	NM_017878	54979	Hs.272805	NM_017878	ENSG00000133328	HRASLS2	PLA1/2-2	HRAS like suppressor 2	protein-coding
1.4752-13	chr2	181834662	181835161	+	0	NA	Intergenic	Intergenic	-10201	NM_001278555	10477	Hs.470804	NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
4.30626	chr18	60742216	60742715	+	0	NA	Intergenic	Intergenic	244148	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
1.70696-12	chr5	52096158	52096657	+	0	NA	exon (NM_015946, exon 2 of 3)	exon (NM_015946, exon 2 of 3)	12271	NM_181501	3672	Hs.644352	NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
2.16811-4	chr13	101802280	101802779	+	0	NA	intron (NM_052867, intron 15 of 43)	L1ME3A|LINE|L1	-205911	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
0.0305075-43	chr4	144695020	144695519	+	0	NA	Intergenic	L1PA16|LINE|L1	55232	NR_134680	105377458	Hs.738046	NR_134680		LOC105377458	-	uncharacterized LOC105377458	ncRNA
0.856568-24	chr12	82152253	82152752	+	0	NA	promoter-TSS (NM_001220473)	promoter-TSS (NM_001220473)	-28	NM_001220473	8499	Hs.506216	NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding
1.38466-5	chr12	78078841	78079340	+	0	NA	Intergenic	Intergenic	-145979	NM_001024383	89795	Hs.655301	NM_014903	ENSG00000067798	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding
1.7134-7	chr16	71380991	71381490	+	0	NA	Intergenic	Intergenic	-11376	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
0.409586-13	chr1	216978555	216979054	+	0	NA	promoter-TSS (NM_001243514)	promoter-TSS (NM_001243514)	-95	NM_001243514	2104	Hs.444225	NM_001438	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen related receptor gamma	protein-coding
2.27678-2	chr4	138134404	138134903	+	0	NA	Intergenic	L2a|LINE|L2	19743	NR_134640	729307	Hs.552764	NR_134640		LOC729307	-	uncharacterized LOC729307	ncRNA
7.74691-11	chr18	32847023	32847522	+	0	NA	intron (NM_001112734, intron 1 of 3)	intron (NM_001112734, intron 1 of 3)	22937	NM_001288711	100101467	Hs.619840	NM_001112734	ENSG00000186814	ZSCAN30	ZNF-WYM|ZNF397OS|ZNF917	zinc finger and SCAN domain containing 30	protein-coding
0.305841-16	chr2	12006217	12006716	+	0	NA	Intergenic	L2c|LINE|L2	-29354	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
1.17475-4	chr7	99680146	99680645	+	0	NA	promoter-TSS (NM_001278284)	promoter-TSS (NM_001278284)	-224	NM_001278287	7551	Hs.435302	NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
0.172766-50	chr1	91966066	91966565	+	0	NA	promoter-TSS (NM_001134420)	promoter-TSS (NM_001134420)	-89	NM_003503	8317	Hs.533573	NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
0.254883-5	chr1	59246479	59246978	+	0	NA	3' UTR (NM_002228, exon 1 of 1)	3' UTR (NM_002228, exon 1 of 1)	3057	NM_002228	3725	Hs.696684	NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
9.35542	chr11	11643458	11643957	+	0	NA	promoter-TSS (NM_198516)	promoter-TSS (NM_198516)	-146	NM_198516	374378	Hs.655152	NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
1.81115-4	chr13	32803514	32804013	+	0	NA	intron (NM_023037, intron 40 of 60)	intron (NM_023037, intron 40 of 60)	82328	NM_001136571	646799	Hs.569254	NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1-like	protein-coding
10.1323	chr21	37881151	37881650	+	0	NA	intron (NM_001146077, intron 2 of 2)	intron (NM_001146077, intron 2 of 2)	-29012	NM_001146079	23562	Hs.660278	NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
8.79426-16	chr5	33828954	33829453	+	0	NA	intron (NM_030955, intron 2 of 23)	intron (NM_030955, intron 2 of 23)	63094	NM_030955	81792	Hs.12680	NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
0.231917-23	chr5	146130506	146131005	+	0	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	127593	NM_181675	5521	Hs.627618	NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
0.985417-14	chr17	27908373	27908872	+	0	NA	intron (NM_001085454, intron 6 of 20)	intron (NM_001085454, intron 6 of 20)	7988	NM_001085454	28964	Hs.514051	NM_014030	ENSG00000108262	GIT1	-	GIT ArfGAP 1	protein-coding
11.2148	chr12	68985352	68985851	+	0	NA	Intergenic	Intergenic	-19018	NM_001251918	5908	Hs.369920	NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B	RAP1B, member of RAS oncogene family	protein-coding
0.0480371-2	chr13	47371104	47371603	+	0	NA	promoter-TSS (NM_001984)	promoter-TSS (NM_001984)	14	NM_001984	2098	Hs.432491	NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
4.36519-15	chr20	48066804	48067303	+	0	NA	intron (NM_004975, intron 1 of 1)	intron (NM_004975, intron 1 of 1)	32128	NM_004975	3745	Hs.84244	NM_004975	ENSG00000158445	KCNB1	DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
0.726296-9	chr11	63890428	63890927	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	19315	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
0.241089-4	chrX	65194465	65194964	+	0	NA	Intergenic	SVA_B|Other|Other	-43998	NR_029637	407008		NR_029637	ENSG00000274536	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
7.64472-8	chr2	242372095	242372594	+	0	NA	intron (NM_014808, intron 9 of 26)	intron (NM_014808, intron 9 of 26)	-44976	NR_036083	100422942		NR_036083	ENSG00000263752	MIR3133	-	microRNA 3133	ncRNA
15.157	chr2	229948289	229948788	+	0	NA	intron (NM_001330157, intron 1 of 1)	intron (NM_001330157, intron 1 of 1)	148270	NM_001330156	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
2.24026-6	chrX	6146812	6147311	+	0	NA	promoter-TSS (NM_181332)	promoter-TSS (NM_181332)	-138	NM_181332	57502	Hs.21107	NM_020742	ENSG00000146938	NLGN4X	ASPGX2|AUTSX2|HLNX|HNL4X|NLGN4	neuroligin 4, X-linked	protein-coding
0.199966-3	chr18	73832850	73833349	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-1854	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
9.28118-6	chr11	78128851	78129350	+	0	NA	promoter-TSS (NM_080491)	promoter-TSS (NM_080491)	-232	NM_080491	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
13.7986-8	chrX	48448085	48448584	+	0	NA	Intergenic	LTR75|LTR|ERVL	-7532	NM_001347219	64743	Hs.521973	NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
0.222764-12	chr15	46938140	46938639	+	0	NA	Intergenic	Intergenic	-538014	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
2.24026-10	chr19	39902748	39903247	+	0	NA	promoter-TSS (NM_022835)	promoter-TSS (NM_022835)	-753	NM_022835	64857	Hs.631574	NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
0.163737-17	chr17	62914914	62915413	+	0	NA	intron (NM_199340, intron 1 of 14)	CpG	435	NM_001303255	374819	Hs.551962	NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
11.3371-2	chr14	100612975	100613474	+	0	NA	exon (NM_206918, exon 3 of 3)	exon (NM_206918, exon 3 of 3)	12788	NM_206918	123099	Hs.159643	NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
0.675262-18	chr1	19283090	19283589	+	0	NA	promoter-TSS (NM_001136265)	promoter-TSS (NM_001136265)	-513	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
16.1439-2	chr2	182506378	182506877	+	0	NA	intron (NM_001030311, intron 1 of 13)	MER3|DNA|hAT-Charlie	15207	NM_001030313	375298	Hs.732358	NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
1.43271-5	chr2	65086252	65086751	+	0	NA	intron (NR_110224, intron 1 of 4)	intron (NR_110224, intron 1 of 4)	4264	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
0.604807-4	chr14	91716530	91717029	+	0	NA	intron (NM_003485, intron 1 of 1)	intron (NM_003485, intron 1 of 1)	3445	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
1.09579-11	chr13	99097495	99097994	+	0	NA	intron (NM_005766, intron 24 of 26)	intron (NM_005766, intron 24 of 26)	76635	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
2.41845-12	chr2	175869430	175869929	+	0	NA	5' UTR (NM_001025201, exon 2 of 13)	5' UTR (NM_001025201, exon 2 of 13)	302	NM_001822	1123	Hs.380138	NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
1.91789-5	chr13	41530237	41530736	+	0	NA	intron (NM_001145353, intron 2 of 7)	SVA_D|Other|Other	25932	NM_001145353	1997	Hs.135646	NM_172373	ENSG00000120690	ELF1	-	E74 like ETS transcription factor 1	protein-coding
9.1364-12	chr2	221030075	221030574	+	0	NA	Intergenic	Intergenic	-259038	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
6.47817-17	chr1	226778096	226778595	+	0	NA	intron (NM_001003665, intron 1 of 3)	intron (NM_001003665, intron 1 of 3)	41844	NM_001003665	375057	Hs.116827	NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
7.85156-17	chr1	117623263	117623762	+	0	NA	intron (NM_003594, intron 9 of 22)	MER68|LTR|ERVL	-13753	NR_030640	100126331		NR_030640	ENSG00000215930	MIR942	MIRN942|hsa-mir-942|mir-942	microRNA 942	ncRNA
1.4691-7	chr2	188554055	188554554	+	0	NA	Intergenic	Intergenic	-135072	NM_001329239	7035	Hs.516578	NM_006287	ENSG00000003436	TFPI	EPI|LACI|TFI|TFPI1	tissue factor pathway inhibitor	protein-coding
12.1968-8	chr1	88816250	88816749	+	0	NA	Intergenic	Intergenic	-333328	NM_001320708	5586	Hs.440833	NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
0.070049-79	chr7	64419805	64420304	+	0	NA	Intergenic	L1PB1|LINE|L1	31360	NM_015852	51351	Hs.250693	NM_015852	ENSG00000152926	ZNF117	H-plk|HPF9	zinc finger protein 117	protein-coding
1.07905-27	chr22	24712234	24712733	+	0	NA	intron (NR_103546, intron 4 of 19)	SVA_D|Other|Other	-25593	NM_001254733	23384	Hs.474384	NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
15.4061-2	chr5	37816944	37817443	+	0	NA	intron (NM_199231, intron 2 of 2)	intron (NM_199231, intron 2 of 2)	17731	NM_001278098	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
1.85752-11	chr4	173988857	173989356	+	0	NA	Intergenic	L1PB1|LINE|L1	-100798	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
1.92465-2	chr17	21414820	21415319	+	0	NA	Intergenic	CpG	39872	NM_001113434	339263	Hs.514016	NM_001113434	ENSG00000212719	C17orf51	-	chromosome 17 open reading frame 51	protein-coding
6.28932-14	chr2	223104519	223105018	+	0	NA	intron (NM_181457, intron 4 of 7)	intron (NM_181457, intron 4 of 7)	-58098	NM_153038	151278	Hs.350729	NM_153038	ENSG00000163081	CCDC140	-	coiled-coil domain containing 140	protein-coding
0.629839-14	chr1	1334335	1334834	+	0	NA	promoter-TSS (NR_015434)	promoter-TSS (NR_015434)	134	NR_135154	81669	Hs.515704	NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
8.66461-8	chr19	36394406	36394905	+	0	NA	TTS (NM_003332)	TTS (NM_003332)	1273	NM_014266	10870	Hs.117339	NM_014266	ENSG00000126264	HCST	DAP10|KAP10|PIK3AP	hematopoietic cell signal transducer	protein-coding
7.25842-7	chr13	110438709	110439208	+	0	NA	promoter-TSS (NM_003749)	promoter-TSS (NM_003749)	-44	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
0.0348833-17	chr9	108663689	108664188	+	0	NA	Intergenic	Intergenic	207132	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
3.8934-10	chr7	111912961	111913460	+	0	NA	intron (NM_021994, intron 1 of 11)	L1M1|LINE|L1	66567	NM_021994	11179	Hs.655904	NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
1.70053-22	chr18	32702542	32703041	+	0	NA	intron (NM_001143827, intron 5 of 7)	intron (NM_001143827, intron 5 of 7)	81177	NR_046177	10982	Hs.532824	NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
0.91515-22	chr7	132265403	132265902	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	-4329	NM_001105543	91584	Hs.511454	NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
1.73277-3	chr4	37822419	37822918	+	0	NA	Intergenic	SVA_C|Other|Other	-5614	NM_018290	55276	Hs.23363	NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
2.82329-2	chr3	192079776	192080275	+	0	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	46813	NM_021032	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
0.296531-126	chr9_gl000199_random	123633	124132	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
42.4109	chr1	40915937	40916436	+	0	NA	promoter-TSS (NM_023070)	promoter-TSS (NM_023070)	-151	NM_023070	65243	Hs.133034	NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
1.11821-21	chr17	48423012	48423511	+	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	-132	NR_110010	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
29.7062	chr2	222253565	222254064	+	0	NA	Intergenic	Intergenic	183264	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
15.8336	chr3	3080134	3080633	+	0	NA	TTS (NR_046554)	TTS (NR_046554)	22446	NR_046554	100873975	Hs.581502	NR_046554		CNTN4-AS1	-	CNTN4 antisense RNA 1	ncRNA
1.57391-4	chrX	54835080	54835579	+	0	NA	promoter-TSS (NM_201222)	promoter-TSS (NM_201222)	-164	NM_201222	10916	Hs.522665	NM_014599	ENSG00000102316	MAGED2	11B6|BARTS5|BCG-1|BCG1|HCA10|MAGE-D2	MAGE family member D2	protein-coding
1.52427-14	chr11	6411185	6411684	+	0	NA	promoter-TSS (NM_000543)	promoter-TSS (NM_000543)	-210	NR_027400	6609	Hs.498173	NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
0.665127-6	chr1	202159006	202159505	+	0	NA	TTS (NR_002930)	TTS (NR_002930)	-3863	NM_001017403	59352	Hs.497402	NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
3.95774-15	chr11	131381644	131382143	+	0	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	28868	NR_110140	101929653	Hs.559159	NR_110140	ENSG00000237654	LOC101929653	-	uncharacterized LOC101929653	ncRNA
0.851282	chr18	23411888	23412387	+	0	NA	Intergenic	Intergenic	258474	NM_005637	6760	Hs.129261	NM_005637	ENSG00000141380	SS18	SSXT|SYT	SS18, nBAF chromatin remodeling complex subunit	protein-coding
1.31944-10	chr3	133297304	133297803	+	0	NA	intron (NM_001282765, intron 2 of 4)	intron (NM_001282765, intron 2 of 4)	4275	NM_001282765	55573	Hs.518265	NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
1.59894-3	chr12	30848316	30848815	+	0	NA	exon (NM_006390, exon 1 of 25)	exon (NM_006390, exon 1 of 25)	364	NM_006390	10526	Hs.505136	NM_006390	ENSG00000133704	IPO8	RANBP8	importin 8	protein-coding
0.127808-11	chr11	59839981	59840480	+	0	NA	Intergenic	SVA_C|Other|Other	-15907	NM_001256916	2206	Hs.386748	NM_000139	ENSG00000149534	MS4A2	APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1	membrane spanning 4-domains A2	protein-coding
42.0901	chr11	95074405	95074904	+	0	NA	Intergenic	Intergenic	-108949	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
0.746879	chr9	19967943	19968442	+	0	NA	Intergenic	Intergenic	-181175	NM_020344	25769	Hs.283014	NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
1.02923-4	chr1_gl000192_random	506126	506625	+	0	NA	Intergenic	Intergenic	-37692	NR_120328	102724558	Hs.712738	NR_120328		CH17-408M7.1	-	uncharacterized LOC102724558	ncRNA
16.925-2	chr2	17979457	17979956	+	0	NA	Intergenic	Intergenic	-18080	NM_001105569	343930	Hs.705359	NM_001105569	ENSG00000151379	MSGN1	MSOG|pMsgn1	mesogenin 1	protein-coding
1.25518-11	chr16	28634430	28635089	+	0	NA	5' UTR (NM_177536, exon 1 of 6)	5' UTR (NM_177536, exon 1 of 6)	148	NM_177536	6817	Hs.567342	NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1	sulfotransferase family 1A member 1	protein-coding
0.123337-5	chr5	107005964	107006463	+	0	NA	exon (NM_001962, exon 1 of 5)	exon (NM_001962, exon 1 of 5)	383	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
1.06238-4	chr17	2339168	2339667	+	0	NA	intron (NM_024086, intron 8 of 9)	intron (NM_024086, intron 8 of 9)	-20687	NR_028335	284009	Hs.632244	NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
1.34896-9	chr16	66391313	66391812	+	0	NA	Intergenic	Intergenic	-8948	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
1.27261	chr19	4007141	4007640	+	0	NA	promoter-TSS (NM_015897)	promoter-TSS (NM_015897)	-206	NM_015897	51588	Hs.105779	NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
1.89096-15	chr3	112280559	112281058	+	0	NA	promoter-TSS (NM_001278712)	promoter-TSS (NM_001278712)	2	NM_001278712	64422	Hs.477126	NM_022488	ENSG00000144848	ATG3	APG3|APG3-LIKE|APG3L|PC3-96	autophagy related 3	protein-coding
4.50997-11	chr1	94505459	94505958	+	0	NA	intron (NM_000350, intron 23 of 49)	intron (NM_000350, intron 23 of 49)	80997	NM_000350	24	Hs.416707	NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
2.88193-18	chr7	44806629	44807128	+	0	NA	intron (NM_001300959, intron 17 of 17)	intron (NM_001300959, intron 17 of 17)	11091	NM_174929	83637	Hs.77978	NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
2.44125-11	chr1	101669708	101670207	+	0	NA	Intergenic	Intergenic	32127	NR_104626	101928370	Hs.534209	NR_104626		LOC101928370	-	uncharacterized LOC101928370	ncRNA
3.25139-7	chr1	212732094	212732593	+	0	NA	Intergenic	CpG	-6333	NM_001030287	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
15.4516-6	chr2	42303898	42304397	+	0	NA	Intergenic	Intergenic	28986	NM_138370	91461	Hs.408542	NM_138370	ENSG00000162878	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
5.81699-9	chr2	24448594	24449093	+	0	NA	intron (NM_006277, intron 29 of 39)	intron (NM_006277, intron 29 of 39)	50931	NM_001040710	653140	Hs.741736	NM_001040710	ENSG00000186453	FAM228A	C2orf84	family with sequence similarity 228 member A	protein-coding
17.8781-6	chr2	100260437	100260936	+	0	NA	intron (NM_001025108, intron 12 of 23)	intron (NM_001025108, intron 12 of 23)	-154168	NM_016316	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
2.84833-2	chr1	231298643	231299142	+	0	NA	exon (NM_001004342, exon 1 of 10)	exon (NM_001004342, exon 1 of 10)	218	NM_001300889	440730	Hs.655089	NM_001004342	ENSG00000119283	TRIM67	TNL	tripartite motif containing 67	protein-coding
6.81937-16	chr11	44681005	44681504	+	0	NA	Intergenic	Intergenic	94113	NM_002231	3732	Hs.527778	NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
1.30768-7	chrX	8452317	8452816	+	0	NA	Intergenic	Intergenic	19695	NM_001001888	425054	Hs.279737	NM_001001888	ENSG00000205642	VCX3B	VCX-C|VCXC	variable charge, X-linked 3B	protein-coding
15.2143-3	chr8	19601416	19601915	+	0	NA	Intergenic	Intergenic	-61404	NR_024040	55790	Hs.613729	NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
0.0392635-28	chr1	23302865	23303364	+	0	NA	Intergenic	Intergenic	-11191	NM_001289974	646262		NM_001289974	ENSG00000215906	LACTBL1	-	lactamase beta like 1	protein-coding
7.85156-5	chr6	90710944	90711443	+	0	NA	intron (NM_021813, intron 6 of 8)	7SK|RNA|RNA	107005	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
6.0206-8	chr16	11761949	11762448	+	0	NA	promoter-TSS (NM_003498)	promoter-TSS (NM_003498)	-91	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
0.589858-33	chr8	80792244	80792743	+	0	NA	Intergenic	Intergenic	-8521	NR_110954	101927040	Hs.350876	NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
3.53596-7	chr16	67586362	67586861	+	0	NA	Intergenic	L2|LINE|L2	-9699	NM_006565	10664	Hs.368367	NM_006565	ENSG00000102974	CTCF	MRD21	CCCTC-binding factor	protein-coding
0.00869459-4	chr4	180981205	180981704	+	0	NA	Intergenic	Intergenic	1098848	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
4.46117-3	chrUn_gl000216	169000	169851	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1.29596-21	chr1	116915192	116916038	+	0	NA	promoter-TSS (NM_000701)	promoter-TSS (NM_000701)	-180	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
15.544-5	chr2	182050556	182051055	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	62241	NR_130784	101927156	Hs.580074	NR_130784	ENSG00000234663	LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
5.85027-15	chr2	105760733	105761232	+	0	NA	non-coding (NR_136172, exon 2 of 3)	non-coding (NR_136172, exon 2 of 3)	411	NR_136172	105373984	Hs.570237	NR_136172	ENSG00000226508	LINC01918	-	long intergenic non-protein coding RNA 1918	ncRNA
1.57391-19	chr3	99442566	99443065	+	0	NA	intron (NM_001850, intron 2 of 4)	intron (NM_001850, intron 2 of 4)	85375	NM_001850	1295	Hs.654548	NM_001850	ENSG00000144810	COL8A1	C3orf7	collagen type VIII alpha 1 chain	protein-coding
4.59671-6	chr5	160352793	160353292	+	0	NA	Intergenic	MIR|SINE|MIR	12591	NR_027111	285629	Hs.554279	NR_027111	ENSG00000253417	LINC02159	-	long intergenic non-protein coding RNA 2159	ncRNA
1.45694-16	chr1	91630731	91631230	+	0	NA	Intergenic	Intergenic	-143168	NM_032186	84146	Hs.173001	NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
0.840728-3	chr10	100433100	100433599	+	0	NA	intron (NM_021828, intron 6 of 11)	intron (NM_021828, intron 6 of 11)	-226629	NM_001322490	3257	Hs.404568	NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
2.89037	chr7	72738027	72738526	+	0	NA	intron (NM_001281451, intron 2 of 6)	intron (NM_001281451, intron 2 of 6)	1303	NM_001281451	135892	Hs.647053	NM_178125	ENSG00000146755	TRIM50	TRIM50A	tripartite motif containing 50	protein-coding
25.3018	chr3	20879284	20879783	+	0	NA	Intergenic	Intergenic	495573	NR_110814	101927829	Hs.639381	NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
2.44888-2	chr17	73520863	73521362	+	0	NA	promoter-TSS (NM_001015002)	promoter-TSS (NM_001015002)	-671	NM_004524	3993	Hs.514477	NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL2, scribble cell polarity complex component	protein-coding
2.48721-17	chr7	149332639	149333138	+	0	NA	Intergenic	Intergenic	-11007	NR_027789	79970	Hs.520785	NM_024910	ENSG00000133624	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
1.66216-3	chr16	48434409	48434908	+	0	NA	intron (NR_039970, intron 1 of 4)	SVA_C|Other|Other	-15429	NM_003031	6477	Hs.706828	NM_003031	ENSG00000196470	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
0.726296-12	chr10	21178910	21179409	+	0	NA	intron (NM_006393, intron 2 of 27)	intron (NM_006393, intron 2 of 27)	7372	NM_006393	10529	Hs.5025	NM_006393	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
0.0174066-13	chr15	63902246	63902745	+	0	NA	intron (NM_003922, intron 77 of 77)	intron (NM_003922, intron 77 of 77)	-9469	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
0.0966115-5	chrX	40327748	40328247	+	0	NA	Intergenic	L1MB3|LINE|L1	-112219	NM_005765	10159	Hs.495960	NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
4.59671-2	chr1	209212531	209213030	+	0	NA	Intergenic	Intergenic	-286021	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
0.428718-18	chr3	11888158	11888657	+	0	NA	promoter-TSS (NM_001284401)	promoter-TSS (NM_001284401)	-14	NR_135609	132001	Hs.475472	NM_138807	ENSG00000144559	TAMM41	C3orf31|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
5.10042	chr21	18996845	18997344	+	0	NA	Intergenic	L2a|LINE|L2	-11826	NM_006806	10950	Hs.473420	NM_006806	ENSG00000154640	BTG3	ANA|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
0.540393-53	chr8	95278459	95278958	+	0	NA	Intergenic	MIRc|SINE|MIR	-4161	NM_181702	2669	Hs.654463	NM_005261	ENSG00000164949	GEM	KIR	GTP binding protein overexpressed in skeletal muscle	protein-coding
19.8716-7	chr7	11232731	11233230	+	0	NA	Intergenic	MER61-int|LTR|ERV1	219481	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
0.11441-27	chr6	14664405	14664904	+	0	NA	Intergenic	Intergenic	-378969	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
0.51587-4	chr2	217401343	217401842	+	0	NA	Intergenic	Intergenic	38072	NM_000998	6168	Hs.433701	NM_000998	ENSG00000197756	RPL37A	L37A	ribosomal protein L37a	protein-coding
2.66001-31	chr3	111750928	111751654	+	0	NA	Intergenic	MER83|LTR|ERV1	-7174	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
16.3827-9	chr2	97149756	97150255	+	0	NA	Intergenic	LTR16B|LTR|ERVL	21117	NM_001285485	93082	Hs.149219	NM_001080535	ENSG00000163121	NEURL3	LINCR	neuralized E3 ubiquitin protein ligase 3	protein-coding
0.101054-2	chr19	55671822	55672321	+	0	NA	exon (NM_001256716, exon 9 of 12)	exon (NM_001256716, exon 9 of 12)	-2971	NM_000363	7137	Hs.709179	NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
0.105502-13	chr22	46959240	46959977	+	0	NA	Intergenic	Intergenic	-26541	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
5.31653-5	chr2	5813440	5813939	+	0	NA	intron (NR_110580, intron 2 of 4)	CpG	17561	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
14.5717	chr12	58246301	58246800	+	0	NA	Intergenic	Intergenic	-5803	NM_005730	10106	Hs.524530	NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
22.6281-2	chr3	194974947	194975446	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-6547	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
2.26214-13	chr2	86115933	86116432	+	0	NA	promoter-TSS (NM_003896)	promoter-TSS (NM_003896)	-25	NM_003896	8869	Hs.415117	NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
1.87087-5	chr17	41132650	41133149	+	0	NA	promoter-TSS (NM_025267)	promoter-TSS (NM_025267)	320	NM_173079	146923	Hs.632255	NM_173079	ENSG00000198863	RUNDC1	-	RUN domain containing 1	protein-coding
0.400052-26	chr10	79597298	79597797	+	0	NA	intron (NM_004747, intron 7 of 31)	intron (NM_004747, intron 7 of 31)	88801	NM_004747	9231	Hs.652690	NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG	discs large MAGUK scaffold protein 5	protein-coding
0.79355-16	chr1	26827204	26827703	+	0	NA	Intergenic	CpG	28551	NM_005517	3151	Hs.181163	NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
8.9279-5	chr22	30214783	30215282	+	0	NA	intron (NM_001242906, intron 4 of 18)	intron (NM_001242906, intron 4 of 18)	19261	NM_032204	84164	Hs.731754	NM_032204	ENSG00000100325	ASCC2	ASC1p100|p100	activating signal cointegrator 1 complex subunit 2	protein-coding
21.5058	chr3	94991541	94992040	+	0	NA	Intergenic	Intergenic	334683	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
0.861861-5	chrX	129304755	129305254	+	0	NA	promoter-TSS (NM_004794)	promoter-TSS (NM_004794)	-769	NM_004794	9363	Hs.654356	NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
3.23306-3	chr2	114361607	114362106	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	-562	NR_024004	84771	Hs.712940	NR_024004		DDX11L2	-	DEAD/H-box helicase 11 like 2	pseudo
7.9588-12	chr17	7340202	7340701	+	0	NA	exon (NM_178518, exon 3 of 3)	exon (NM_178518, exon 3 of 3)	-1141	NR_130156	2256	Hs.655193	NM_004112	ENSG00000161958	FGF11	FGF-11|FHF-3|FHF3	fibroblast growth factor 11	protein-coding
5.21434-4	chr8	93031235	93031734	+	0	NA	intron (NM_001198633, intron 1 of 10)	intron (NM_001198633, intron 1 of 10)	-1576	NM_175636	862	Hs.368431	NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 translocation partner 1	protein-coding
9.50782-8	chr6	16302839	16303338	+	0	NA	3' UTR (NM_000332, exon 9 of 9)	3' UTR (NM_000332, exon 9 of 9)	64277	NM_006877	2766	Hs.484741	NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
2.5649-17	chr20	31214605	31215104	+	0	NA	Intergenic	Intergenic	24929	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding
0.245682-21	chr1	71513039	71513538	+	0	NA	non-coding (NR_028294, exon 1 of 6)	intron (NR_038420, intron 1 of 2)	203	NM_001126044	5733	Hs.445000	NM_000957	ENSG00000050628	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3-VI|EP3e|PGE2-R	prostaglandin E receptor 3	protein-coding
21.4026-2	chr3	182002515	182003014	+	0	NA	Intergenic	Intergenic	201386	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
0.783135-26	chr20	35402056	35402555	+	0	NA	promoter-TSS (NM_001145316)	promoter-TSS (NM_001145316)	-75	NM_001145317	79980	Hs.632268	NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 homolog, MIS12 kinetochore complex component	protein-coding
0.665127-10	chr2	173564461	173564960	+	0	NA	Intergenic	SVA_B|Other|Other	-35815	NM_007023	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
0.574959-18	chr2	51067651	51068150	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	-144500	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA
0.0612309-24	chr5	134643112	134643611	+	0	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	-59494	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
1.14074	chr15	57614200	57614699	+	0	NA	intron (NR_120337, intron 2 of 4)	intron (NR_120337, intron 2 of 4)	3113	NR_120337	101928611	Hs.569495	NR_120337		LINC01413	-	long intergenic non-protein coding RNA 1413	ncRNA
10.2228-5	chr3	175864503	175865002	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-368139	NR_107017	102465858		NR_107017	ENSG00000283333	MIR7977	hsa-mir-7977	microRNA 7977	ncRNA
0.296531-111	chr8	128587880	128588379	+	0	NA	Intergenic	Intergenic	-93745	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
0.381045-3	chr12	57520303	57520802	+	0	NA	Intergenic	Intergenic	-1730	NM_002332	4035	Hs.162757	NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|IGFBP3R|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
1.29596-16	chr17	47203372	47203871	+	0	NA	Intergenic	SVA_D|Other|Other	-6201	NM_001159388	124872	Hs.374679	NM_153446	ENSG00000167080	B4GALNT2	B4GALT|GALGT2	beta-1,4-N-acetyl-galactosaminyltransferase 2	protein-coding
14.023-3	chrUn_gl000220	55137	55636	+	0	NA	Intergenic	Intergenic	-41743	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
2.34331-6	chr10	8374169	8374668	+	0	NA	Intergenic	Intergenic	-64150	NR_108058	100507143	Hs.258979	NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
0.070049-57	chr3	111855708	111856207	+	0	NA	Intergenic	Intergenic	-3805	NM_152785	257144	Hs.49614	NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
1.22629	chr12	57506008	57506507	+	0	NA	Intergenic	Intergenic	-1061	NM_003153	6778	Hs.524518	NM_003153	ENSG00000166888	STAT6	D12S1644|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
2.24754	chr12	112450975	112451474	+	0	NA	promoter-TSS (NM_001294314)	promoter-TSS (NM_001294314)	72	NM_006817	10961	Hs.75841	NM_006817	ENSG00000089248	ERP29	C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9	endoplasmic reticulum protein 29	protein-coding
6.47817-13	chr11	73104537	73105036	+	0	NA	intron (NM_032871, intron 6 of 10)	intron (NM_032871, intron 6 of 10)	17073	NM_032871	84957	Hs.533720	NM_032871	ENSG00000054967	RELT	TNFRSF19L|TRLT	RELT tumor necrosis factor receptor	protein-coding
1.4691-3	chr1	177140183	177140682	+	0	NA	promoter-TSS (NM_021165)	promoter-TSS (NM_021165)	-92	NM_021165	57795	Hs.495918	NM_021165	ENSG00000198797	BRINP2	DBCCR1L2|FAM5B	BMP/retinoic acid inducible neural specific 2	protein-coding
20.348-2	chr8	131431181	131431680	+	0	NA	intron (NM_001247996, intron 1 of 30)	intron (NM_001247996, intron 1 of 30)	24476	NM_001247996	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
0.259491-2	chr7	150674145	150674644	+	0	NA	intron (NM_172056, intron 1 of 8)	intron (NM_172056, intron 1 of 8)	1008	NM_172056	3757	Hs.647099	NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
7.56962	chr1	86053470	86053969	+	0	NA	Intergenic	L1M1|LINE|L1	7275	NM_001554	3491	Hs.8867	NM_001554	ENSG00000142871	CYR61	CCN1|GIG1|IGFBP10	cysteine rich angiogenic inducer 61	protein-coding
1.43271-12	chr2	55747293	55747792	+	0	NA	exon (NM_001282761, exon 2 of 11)	exon (NM_001282761, exon 2 of 11)	811	NM_001282761	112942	Hs.264208	NM_080667	ENSG00000163001	CFAP36	BARTL1|CCDC104	cilia and flagella associated protein 36	protein-coding
5.85027-14	chr5	180611025	180611524	+	0	NA	Intergenic	Intergenic	7634	NR_108031	102577426	Hs.277359	NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
1.07349-2	chr4	1750322	1750821	+	0	NA	Intergenic	Intergenic	27354	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	transforming acidic coiled-coil containing protein 3	protein-coding
22.1325	chrX	6686810	6687309	+	0	NA	Intergenic	Intergenic	-233900	NM_016379	51481	Hs.170076	NM_016379	ENSG00000169059	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge, X-linked 3A	protein-coding
1.49354-4	chr10	98262598	98263097	+	0	NA	intron (NM_012465, intron 1 of 20)	intron (NM_012465, intron 1 of 20)	10836	NM_012465	7093	Hs.154296	NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
8.01343-12	chr9	130580031	130580530	+	0	NA	intron (NR_136302, intron 2 of 5)	intron (NR_136302, intron 2 of 5)	1935	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
2.10419-3	chr2	30369219	30369718	+	0	NA	promoter-TSS (NM_016061)	promoter-TSS (NM_016061)	-282	NM_001127401	51646	Hs.515890	NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
0.190881	chr4	124373654	124374153	+	0	NA	Intergenic	Intergenic	53258	NM_005841	10252	Hs.744854	NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
0.649968-30	chr13	52378021	52378520	+	0	NA	promoter-TSS (NM_024705)	promoter-TSS (NM_024705)	28	NM_001270424	79758	Hs.266728	NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
2.30623-2	chr7	96225362	96226123	+	0	NA	Intergenic	Intergenic	67908	NR_038948	100506136	Hs.729869	NR_038948	ENSG00000127922	LOC100506136	-	uncharacterized LOC100506136	ncRNA
4.25969-23	chr11	65624349	65624848	+	0	NA	intron (NM_005507, intron 1 of 3)	CpG	1206	NM_005507	1072	Hs.170622	NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
2.98432-21	chr4	73935296	73935795	+	0	NA	promoter-TSS (NM_173827)	promoter-TSS (NM_173827)	-69	NM_001300729	285521	Hs.356697	NM_173827	ENSG00000163626	COX18	COX18HS	COX18, cytochrome c oxidase assembly factor	protein-coding
0.136762-2	chr7	26437581	26438080	+	0	NA	intron (NR_136272, intron 1 of 1)	CpG	1208	NR_136272	105375304	Hs.735352	NR_136270	ENSG00000225792	LOC105375304	-	uncharacterized LOC105375304	ncRNA
1.29596-5	chr3	12851399	12851898	+	0	NA	exon (NM_001162499, exon 5 of 15)	exon (NM_001162499, exon 5 of 15)	13477	NM_001162499	23066	Hs.343664	NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
1.42065-7	chr13	45428638	45429137	+	0	NA	Intergenic	Intergenic	-45121	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
0.195421-3	chr12	120755209	120755708	+	0	NA	Intergenic	CpG	10134	NM_000928	5319	Hs.992	NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
19.4692-8	chr1	32645324	32645823	+	0	NA	intron (NM_175852, intron 1 of 10)	CpG	228	NM_175852	200081	Hs.17987	NM_175852	ENSG00000084652	TXLNA	IL14|TXLN	taxilin alpha	protein-coding
0.574959	chr15	87317012	87317511	+	0	NA	intron (NM_152336, intron 23 of 24)	intron (NM_152336, intron 23 of 24)	-158850	NR_135682	105370954	Hs.668501	NR_135682	ENSG00000259636	LOC105370954	-	uncharacterized LOC105370954	ncRNA
3.8405-3	chr2	105946055	105946554	+	0	NA	promoter-TSS (NM_001328646)	promoter-TSS (NM_001328646)	-133	NM_001142621	9392	Hs.446350	NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
1.43271-34	chr6	3209583	3210082	+	0	NA	Intergenic	Intergenic	-13831	NR_038295	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	ncRNA
0.241089-20	chr21	19190903	19191402	+	0	NA	intron (NM_017447, intron 1 of 4)	CpG	551	NM_017447	54149	Hs.293811	NM_017447	ENSG00000154642	C21orf91	C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
20.716-2	chr5	10331499	10331998	+	0	NA	Intergenic	Intergenic	-22003	NM_005885	10299	Hs.432862	NM_005885	ENSG00000145495	MARCH6	DOA10|MARCH-VI|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
1.43271-29	chr1	145139568	145140067	+	0	NA	intron (NM_001277444, intron 21 of 25)	CpG	43410	NM_004892	9554	Hs.632438	NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)	protein-coding
16.7572-2	chr18	43407522	43408021	+	0	NA	intron (NM_213602, intron 1 of 5)	intron (NM_213602, intron 1 of 5)	2226	NM_213602	284266	Hs.287692	NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
2.41845-14	chr9	136746387	136746886	+	0	NA	intron (NM_001134398, intron 2 of 29)	intron (NM_001134398, intron 2 of 29)	110810	NM_001134398	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
1.88425-24	chr2	112463390	112463889	+	0	NA	Intergenic	Intergenic	65072	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
27.9048	chr5	163772256	163772755	+	0	NA	Intergenic	Intergenic	121903	NR_105064	101927835	Hs.735171	NR_105064	ENSG00000253236	LINC02143	-	long intergenic non-protein coding RNA 2143	ncRNA
0.199966-11	chr17	57642636	57643135	+	0	NA	promoter-TSS (NM_001166301)	promoter-TSS (NM_001166301)	-1	NM_001166301	79665	Hs.29403	NM_024612	ENSG00000108406	DHX40	ARG147|DDX40|PAD	DEAH-box helicase 40	protein-coding
3.99027-17	chr7	116724065	116724564	+	0	NA	intron (NR_109980, intron 1 of 4)	L2|LINE|L2	6521	NR_109980	93654	Hs.628891	NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
5.49751-7	chr19	19651903	19652402	+	0	NA	intron (NM_153221, intron 4 of 7)	intron (NM_153221, intron 4 of 7)	3078	NM_153221	148113	Hs.279574	NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
10-2	chr9	104249201	104249700	+	0	NA	promoter-TSS (NM_001303108)	promoter-TSS (NM_001303108)	53	NM_001303107	84302	Hs.388742	NM_032342	ENSG00000165152	TMEM246	C9orf125	transmembrane protein 246	protein-coding
0.624821-20	chr1	150954364	150954863	+	0	NA	5' UTR (NM_003568, exon 1 of 14)	5' UTR (NM_003568, exon 1 of 14)	114	NM_003568	8416	Hs.3346	NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
0.555173-17	chr5	38888064	38888563	+	0	NA	intron (NM_001323505, intron 7 of 17)	LTR9B|LTR|ERV1	42212	NM_001323504	9180	Hs.120658	NM_003999	ENSG00000145623	OSMR	IL-31R-beta|IL-31RB|OSMRB|PLCA1	oncostatin M receptor	protein-coding
18.0967-3	chr12	113454536	113455035	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	38511	NM_016817	4939	Hs.414332	NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
2.19683-11	chr8	120844836	120845335	+	0	NA	promoter-TSS (NM_003184)	promoter-TSS (NM_003184)	-11	NM_003184	6873	Hs.122752	NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
1.37869-4	chr11	73018907	73019406	+	0	NA	promoter-TSS (NM_014786)	promoter-TSS (NM_014786)	-507	NM_014786	9828	Hs.533719	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor 17	protein-coding
0.867161-2	chr2	214457199	214457698	+	0	NA	intron (NR_047660, intron 9 of 14)	intron (NR_047660, intron 9 of 14)	-165343	NR_039640	100616375		NR_039640	ENSG00000265734	MIR4438	-	microRNA 4438	ncRNA
0.888424-13	chr19	982609	983108	+	0	NA	Intergenic	CpG	-1470	NM_024100	57418	Hs.325321	NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
0.291884-42	chr9	139247027	139247526	+	0	NA	promoter-TSS (NM_001145639)	promoter-TSS (NM_001145639)	-233	NM_001145639	26086	Hs.239370	NM_015597	ENSG00000160360	GPSM1	AGS3	G-protein signaling modulator 1	protein-coding
1.51195-31	chr11	94134058	94134557	+	0	NA	exon (NM_016540, exon 1 of 4)	exon (NM_016540, exon 1 of 4)	278	NM_016540	10888	Hs.272385	NM_016540	ENSG00000123901	GPR83	GIR|GPR72	G protein-coupled receptor 83	protein-coding
17.3755	chr19	38121351	38121850	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	24713	NM_001320666	22835	Hs.716719	NM_014898	ENSG00000120784	ZFP30	ZNF745	ZFP30 zinc finger protein	protein-coding
0.0436481-4	chr18	9835328	9835827	+	0	NA	intron (NM_006868, intron 5 of 6)	intron (NM_006868, intron 5 of 6)	-50146	NM_032243	84203	Hs.98712	NM_032243	ENSG00000168454	TXNDC2	SPTRX|SPTRX1	thioredoxin domain containing 2	protein-coding
0.675262-7	chr7	26241603	26242102	+	0	NA	intron (NM_016587, intron 1 of 5)	CpG-24122	528	NM_016587	11335	Hs.381189	NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma	chromobox 3	protein-coding
17.0774-7	chr8	80873644	80874143	+	0	NA	intron (NM_014018, intron 2 of 2)	intron (NM_014018, intron 2 of 2)	68613	NM_014018	28957	Hs.521124	NM_014018	ENSG00000147586	MRPS28	HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
2.22573-8	chr6	134268577	134269076	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-4482	NM_001253676	9519	Hs.486507	NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
28.8606	chr1	201398669	201399168	+	0	NA	Intergenic	Intergenic	-8044	NM_003281	7135	Hs.320890	NM_003281	ENSG00000159173	TNNI1	SSTNI|TNN1	troponin I1, slow skeletal type	protein-coding
5.21434-14	chr4	158941304	158941803	+	0	NA	Intergenic	Intergenic	152165	NM_016613	51313	Hs.567498	NM_016613	ENSG00000164125	FAM198B	AD021|AD036|C4orf18|ENED	family with sequence similarity 198 member B	protein-coding
2.24754-2	chr12	110116396	110116895	+	0	NA	Intergenic	Intergenic	-35542	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
6.40165-2	chr18	65772982	65773481	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-589264	NM_032160	92126	Hs.124673	NM_032160	ENSG00000171451	DSEL	C18orf4	dermatan sulfate epimerase-like	protein-coding
3.95774-4	chr12	67935385	67935884	+	0	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	21772	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
8.15309-3	chr8	128398429	128398928	+	0	NA	intron (NR_117099, intron 3 of 3)	MLT1K|LTR|ERVL-MaLR	-13966	NR_109834	101805488	Hs.745578	NR_109834	ENSG00000280997	CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2 (non-protein coding)	ncRNA
0.376307-20	chrX	101054270	101054769	+	0	NA	Intergenic	Intergenic	58030	NR_028089	55998	Hs.307077	NM_032946	ENSG00000126952	NXF5	-	nuclear RNA export factor 5	protein-coding
8.21023-8	chr1	36765441	36765940	+	0	NA	intron (NM_005119, intron 9 of 11)	intron (NM_005119, intron 9 of 11)	-6304	NM_001162530	79729	Hs.524496	NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
0.109954-5	chr19	41224789	41225288	+	0	NA	intron (NM_025194, intron 1 of 6)	intron (NM_025194, intron 1 of 6)	2030	NM_025194	80271	Hs.515415	NM_025194	ENSG00000086544	ITPKC	IP3-3KC|IP3KC	inositol-trisphosphate 3-kinase C	protein-coding
0.888424-34	chr20	9818469	9818968	+	0	NA	intron (NM_020341, intron 1 of 10)	intron (NM_020341, intron 1 of 10)	969	NM_020341	57144	Hs.32539	NM_020341	ENSG00000101349	PAK5	PAK7	p21 (RAC1) activated kinase 5	protein-coding
0.109954-19	chr19	1194416	1194915	+	0	NA	Intergenic	CpG	-11133	NM_000455	6794	Hs.515005	NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
0.675262-26	chr1	184823152	184823651	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	-99360	NR_135118	80267	Hs.523811	NM_025191	ENSG00000116406	EDEM3	C1orf22	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
0.376307-26	chr1	26758408	26758907	+	0	NA	promoter-TSS (NM_001243564)	promoter-TSS (NM_001243564)	-116	NM_205861	79947	Hs.369385	NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase subunit	protein-coding
2.55707-10	chr10	5855508	5856007	+	0	NA	promoter-TSS (NM_001115156)	promoter-TSS (NM_001115156)	-245	NM_001494	2665	Hs.299055	NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
1.02923-15	chr2	56701821	56702320	+	0	NA	Intergenic	Intergenic	-289165	NR_125368	100129434	Hs.580330	NR_125368		LOC100129434	-	uncharacterized LOC100129434	ncRNA
12.1183-2	chr5	167886274	167886773	+	0	NA	intron (NM_015238, intron 19 of 22)	MIRb|SINE|MIR	-26940	NM_002887	5917	Hs.654907	NM_002887	ENSG00000113643	RARS	ArgRS|DALRD1|HLD9	arginyl-tRNA synthetase	protein-coding
2.24026-17	chr11	94842185	94842684	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	19460	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
2.29148-11	chr1	6694649	6695148	+	0	NA	3' UTR (NM_138350, exon 5 of 5)	3' UTR (NM_138350, exon 5 of 5)	9688	NM_001195752	90326	Hs.689006	NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
10.2595	chr10	126734268	126734767	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-13078	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
0.0130484-19	chr16	87958857	87959356	+	0	NA	intron (NM_001739, intron 2 of 6)	MER68|LTR|ERVL	11006	NM_001739	763	Hs.177446	NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding
1.30182-7	chr9	2157663	2158162	+	0	NA	promoter-TSS (NM_001289400)	promoter-TSS (NM_001289400)	232	NM_001289398	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
2.53366	chr9	45995903	45996402	+	0	NA	Intergenic	MER61D|LTR|ERV1	-120791	NR_103714	100289124	Hs.567050	NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
0.851282-21	chr3	185625025	185625524	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	30650	NM_004593	6434	Hs.533122	NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog (Drosophila)	protein-coding
4.43697-4	chr21	35577242	35577741	+	0	NA	Intergenic	Intergenic	24513	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
9.50782-5	chr9	95705317	95705816	+	0	NA	Intergenic	Intergenic	-4035	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
23.536	chr6	152614429	152614928	+	0	NA	intron (NM_182961, intron 95 of 145)	intron (NM_182961, intron 95 of 145)	-86987	NR_120501	100505475	Hs.571203	NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
0.32452-15	chr19	58978129	58978628	+	0	NA	promoter-TSS (NM_014347)	promoter-TSS (NM_014347)	-34	NM_014347	25799	Hs.515660	NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
3.74688-14	chr3	71515775	71516274	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	75216	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
0.15923-4	chr11	46259090	46260077	+	0	NA	Intergenic	CpG	-39606	NM_052854	90993	Hs.405961	NM_052854	ENSG00000157613	CREB3L1	OASIS	cAMP responsive element binding protein 3 like 1	protein-coding
1.37869-16	chr1	24070061	24070560	+	0	NA	intron (NM_003198, intron 1 of 10)	CpG	454	NM_003198	6924	Hs.15535	NM_003198	ENSG00000011007	ELOA	SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
2.29148-4	chr1	249152218	249152717	+	0	NA	exon (NM_001136036, exon 2 of 12)	exon (NM_001136036, exon 2 of 12)	658	NM_001136036	55657	Hs.377705	NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
0.0921731-24	chr14	63921413	63921912	+	0	NA	intron (NM_006246, intron 2 of 13)	MIRc|SINE|MIR	53294	NM_001282181	5529	Hs.334868	NM_006246	ENSG00000154001	PPP2R5E	-	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
3.14258	chr2	175201341	175201840	+	0	NA	exon (NM_001145250, exon 2 of 2)	exon (NM_001145250, exon 2 of 2)	1769	NM_001145250	100131390	Hs.516603	NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
12.84-4	chr1	242153247	242153746	+	0	NA	Intergenic	Intergenic	8889	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
0.296531-101	chr19_gl000208_random	46558	47057	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2.05512-11	chr11	95053371	95053870	+	0	NA	Intergenic	SVA_F|Other|Other	-87915	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
2.5649-2	chr7	126340985	126341484	+	0	NA	intron (NM_001127323, intron 7 of 10)	intron (NM_001127323, intron 7 of 10)	357004	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
1.07905-4	chr1	92951171	92951670	+	0	NA	intron (NM_005263, intron 1 of 6)	CpG-1329	208	NM_001127216	2672	Hs.73172	NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
0.925886-7	chr1	46769078	46769577	+	0	NA	promoter-TSS (NM_001297566)	promoter-TSS (NM_001297566)	42	NM_006004	7388	Hs.481571	NM_006004	ENSG00000173660	UQCRH	QCR6|UQCR8	ubiquinol-cytochrome c reductase hinge protein	protein-coding
9.39302-20	chr8	11363383	11363882	+	0	NA	intron (NM_001330465, intron 1 of 11)	intron (NM_001330465, intron 1 of 11)	12111	NM_001715	640	Hs.146591	NM_001715	ENSG00000136573	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
10.0524	chr8	142849999	142850498	+	0	NA	Intergenic	Intergenic	17426	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
4.82804-8	chr4	115843655	115844154	+	0	NA	intron (NM_022569, intron 6 of 13)	intron (NM_022569, intron 6 of 13)	191128	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding
7.14443-6	chr17	25872642	25873141	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	73855	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
0.788339-3	chr22	22089981	22090480	+	0	NA	promoter-TSS (NM_013313)	promoter-TSS (NM_013313)	-107	NR_130910	29799	Hs.517436	NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
7.07744-5	chr9	19446263	19446762	+	0	NA	intron (NM_001010887, intron 5 of 5)	intron (NM_001010887, intron 5 of 5)	37587	NM_001010887	340485	Hs.41379	NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
5.17126-8	chr19	36208292	36208791	+	0	NA	promoter-TSS (NM_014727)	promoter-TSS (NM_014727)	-380	NM_014727	9757	Hs.92236	NM_014727	ENSG00000272333	KMT2B	CXXC10|HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
2.19683-12	chr12	27866397	27866896	+	0	NA	intron (NM_021821, intron 1 of 7)	MLT2B3|LTR|ERVL	2940	NM_021821	60488	Hs.714076	NM_021821	ENSG00000061794	MRPS35	HDCMD11P|MDS023|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding
0.649968-15	chr4	4432258	4432757	+	0	NA	intron (NM_016930, intron 7 of 10)	MIRb|SINE|MIR	31192	NM_001346300	53407	Hs.584913	NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
27.5449-3	chr4	157058860	157059359	+	0	NA	Intergenic	Intergenic	-184061	NM_001334	1519	Hs.75262	NM_001334	ENSG00000256043	CTSO	CTSO1	cathepsin O	protein-coding
0.594835-6	chr18	22307068	22307567	+	0	NA	intron (NR_134604, intron 2 of 2)	intron (NR_134604, intron 2 of 2)	1572	NR_134604	105372028	Hs.569901	NR_134604	ENSG00000266573	LOC105372028	-	uncharacterized LOC105372028	ncRNA
5.59091-2	chr14	56531746	56532245	+	0	NA	Intergenic	L1PA10|LINE|L1	-53098	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
1.58641-7	chr6	150400721	150401220	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-10687	NM_024518	79465	Hs.15422	NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
6.43974-7	chr9	128208926	128209425	+	0	NA	intron (NM_001006617, intron 10 of 11)	intron (NM_001006617, intron 10 of 11)	148006	NM_001282681	26130	Hs.42376	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
7.93174	chr18	60544772	60545271	+	0	NA	intron (NM_194449, intron 4 of 16)	intron (NM_194449, intron 4 of 16)	162349	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
0.0130484-38	chr7	150820896	150821395	+	0	NA	TTS (NM_001308304)	TTS (NM_001308304)	9380	NM_001308305	116988	Hs.647075	NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
7.64472-12	chr8	8820671	8821170	+	0	NA	Intergenic	CpG	-39394	NM_153332	90459	Hs.20000	NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|THEX1	exoribonuclease 1	protein-coding
3.23306-7	chr15	80444520	80445019	+	0	NA	promoter-TSS (NM_000137)	promoter-TSS (NM_000137)	-464	NM_000137	2184	Hs.73875	NM_000137	ENSG00000103876	FAH	-	fumarylacetoacetate hydrolase	protein-coding
6.55608-4	chr4	56624766	56625265	+	0	NA	Intergenic	Intergenic	-61222	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
0.195421-2	chr7	1972789	1973288	+	0	NA	intron (NM_001013836, intron 17 of 18)	intron (NM_001013836, intron 17 of 18)	7148	NM_001304525	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
0.338583-9	chr5	112073261	112073760	+	0	NA	promoter-TSS (NM_000038)	promoter-TSS (NM_000038)	-46	NM_000038	324	Hs.158932	NM_000038	ENSG00000134982	APC	BTPS2|DP2|DP2.5|DP3|GS|PPP1R46	APC, WNT signaling pathway regulator	protein-coding
0.443122-3	chr5	36583993	36584492	+	0	NA	Intergenic	Intergenic	-22215	NM_001289939	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
1.56767-2	chr16	1940411	1940910	+	0	NA	Intergenic	Intergenic	-6428	NR_033914	64735	Hs.662737	NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA
4.02305-4	chr1	236767763	236768262	+	0	NA	promoter-TSS (NM_018072)	promoter-TSS (NM_018072)	-171	NM_018072	55127	Hs.708114	NM_018072	ENSG00000119285	HEATR1	BAP28|UTP10	HEAT repeat containing 1	protein-coding
0.310503-13	chr5	143267255	143267754	+	0	NA	Intergenic	Intergenic	75778	NM_021182	57824	Hs.158320	NM_021182	ENSG00000158497	HMHB1	HB-1|HB-1Y|HLA-HB1	histocompatibility minor HB-1	protein-coding
0.594835-5	chr12	120933884	120934383	+	0	NA	promoter-TSS (NR_038854)	promoter-TSS (NR_038854)	274	NM_001037495	8655	Hs.5120	NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
1.19186-8	chr6	86505609	86506108	+	0	NA	Intergenic	Intergenic	-117407	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5	ncRNA
15.4061	chr8	6578082	6578581	+	0	NA	intron (NM_018361, intron 1 of 7)	intron (NM_018361, intron 1 of 7)	12453	NM_018361	55326	Hs.624002	NM_018361	ENSG00000155189	AGPAT5	1AGPAT5|LPAATE	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
0.716041-14	chr13	100637027	100637526	+	0	NA	exon (NM_007129, exon 2 of 3)	exon (NM_007129, exon 2 of 3)	3250	NM_007129	7546	Hs.653700	NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
3.28827	chr9	109624364	109624863	+	0	NA	promoter-TSS (NM_001347997)	promoter-TSS (NM_001347997)	-765	NM_021224	58499	Hs.370379	NM_021224	ENSG00000148143	ZNF462	Zfp462	zinc finger protein 462	protein-coding
5.8838-10	chr7	128865184	128865683	+	0	NA	intron (NM_001130720, intron 1 of 16)	CpG	578	NM_015328	23382	Hs.600789	NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
3.53596-20	chr3	138067100	138067599	+	0	NA	promoter-TSS (NM_001252090)	promoter-TSS (NM_001252090)	-159	NM_001085049	22808	Hs.527021	NM_012219	ENSG00000158186	MRAS	M-RAs|R-RAS3|RRAS3	muscle RAS oncogene homolog	protein-coding
0.472076	chr19	49140565	49141064	+	0	NA	promoter-TSS (NM_001352)	promoter-TSS (NM_001352)	-7	NM_001352	1628	Hs.414480	NM_001352	ENSG00000105516	DBP	DABP	D-box binding PAR bZIP transcription factor	protein-coding
1.70053-6	chr1	95285915	95286414	+	0	NA	promoter-TSS (NR_104131)	promoter-TSS (NR_104131)	64	NM_152369	126969	Hs.483423	NM_152369	ENSG00000143036	SLC44A3	CTL3	solute carrier family 44 member 3	protein-coding
13.7986-7	chr3	122683594	122684093	+	0	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	11138	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
9.62574-9	chr3	185048364	185048863	+	0	NA	intron (NM_001242317, intron 2 of 12)	L2a|LINE|L2	-32223	NM_004721	9175	Hs.591306	NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
6.75718-15	chr8	141265094	141265593	+	0	NA	intron (NM_031466, intron 15 of 22)	intron (NM_031466, intron 15 of 22)	-154709	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
4.84126	chr1_gl000191_random	101116	101615	+	0	NA	Intergenic	SVA_D|Other|Other	-51084	NM_001191007	10772	Hs.3530	NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
0.385789-31	chr3	179065348	179065847	+	0	NA	5' UTR (NM_033540, exon 1 of 18)	5' UTR (NM_033540, exon 1 of 18)	117	NM_033540	55669	Hs.478383	NM_017927	ENSG00000171109	MFN1	hfzo1|hfzo2	mitofusin 1	protein-coding
2.652-9	chr5	32276186	32276685	+	0	NA	intron (NM_001040446, intron 2 of 15)	intron (NM_001040446, intron 2 of 15)	36679	NM_001294343	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
6.09065-8	chr2	3108575	3109074	+	0	NA	intron (NR_110228, intron 3 of 6)	LTR5_Hs|LTR|ERVK	20974	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
1.29596-26	chr17	45569669	45570168	+	0	NA	promoter-TSS (NR_033934)	promoter-TSS (NR_033934)	68	NR_033934	653479	Hs.537279	NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
0.11441-3	chr3	159482334	159482833	+	0	NA	TTS (NR_121669)	TTS (NR_121669)	3818	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
2.41845-13	chr5	168027306	168027805	+	0	NA	Intergenic	Intergenic	-20941	NM_024594	79646	Hs.388400	NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
22.161-2	chrX	37968697	37969196	+	0	NA	intron (NM_001163335, intron 13 of 17)	intron (NM_001163335, intron 13 of 17)	76159	NM_001163334	94122	Hs.662334	NM_138780	ENSG00000147041	SYTL5	slp5	synaptotagmin like 5	protein-coding
8.47712	chr2	105658553	105659052	+	0	NA	intron (NM_182640, intron 1 of 10)	MLT1F2|LTR|ERVL-MaLR	-3848	NR_110603	102724691	Hs.606390	NR_110603	ENSG00000224509	LOC102724691	-	uncharacterized LOC102724691	ncRNA
1.59894-6	chr9	34646396	34646895	+	0	NA	promoter-TSS (NM_000155)	promoter-TSS (NM_000155)	59	NM_000155	2592	Hs.522090	NM_000155	ENSG00000213930	GALT	-	galactose-1-phosphate uridylyltransferase	protein-coding
1.00179-7	chr20	30142978	30143477	+	0	NA	intron (NM_178580, intron 8 of 12)	intron (NM_178580, intron 8 of 12)	17839	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
0.227338-26	chr17	70721611	70722110	+	0	NA	intron (NM_001159770, intron 7 of 9)	intron (NM_001159770, intron 7 of 9)	-85249	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
0.00434512-24	chr1	11677271	11677770	+	0	NA	Intergenic	Intergenic	7932	NR_104624	101929181	Hs.568616	NR_104624	ENSG00000235643	LINC01647	-	long intergenic non-protein coding RNA 1647	ncRNA
1.26679-4	chr20	3788021	3788520	+	0	NA	promoter-TSS (NR_109859)	promoter-TSS (NR_109859)	-871	NR_109859	101929125	Hs.744106	NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
9.50782-19	chr12	113124062	113124561	+	0	NA	intron (NM_001347952, intron 1 of 21)	MLT1H|LTR|ERVL-MaLR	8670	NR_031631	100302227		NR_031631	ENSG00000283507	MIR1302-1	MIRN1302-1|hsa-mir-1302-1	microRNA 1302-1	ncRNA
0.338583-3	chr6	6467506	6468005	+	0	NA	intron (NR_026970, intron 3 of 7)	intron (NR_026970, intron 3 of 7)	-121179	NM_004271	9450	Hs.653138	NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
0.888424-12	chr1	1850906	1851405	+	0	NA	promoter-TSS (NM_178545)	promoter-TSS (NM_178545)	-415	NM_178545	339456	Hs.123423	NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
4.58421-11	chr7	72435940	72436439	+	0	NA	intron (NM_001317815, intron 2 of 4)	intron (NM_001317815, intron 2 of 4)	1295	NM_001317815	378108	Hs.645328	NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
48.6012	chr13	102528308	102528807	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	40438	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
4.15669-8	chr1	86043552	86044051	+	0	NA	5' UTR (NM_001134445, exon 1 of 7)	5' UTR (NM_001134445, exon 1 of 7)	245	NM_001134445	23576	Hs.713411	NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
0.798767-11	chr20	44768486	44768985	+	0	NA	Intergenic	Intergenic	21842	NM_001302753	958	Hs.472860	NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
3.41989-13	chr17	65692924	65693423	+	0	NA	3' UTR (NM_012417, exon 9 of 9)	3' UTR (NM_012417, exon 9 of 9)	-20776	NM_015462	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
1.28427-2	chr15	40395476	40395975	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	2562	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
6.45892-4	chr8	95654434	95654933	+	0	NA	intron (NM_001034915, intron 2 of 15)	CpG-25866	1319	NM_001122825	54845	Hs.487471	NM_017697	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
3.9794-26	chr20	51657824	51658323	+	0	NA	intron (NM_173485, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	69127	NM_173485	128553	Hs.473117	NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
2.46417-6	chr21	36599980	36600479	+	0	NA	Intergenic	Intergenic	-178634	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
1.25518-12	chr4	37891933	37892432	+	0	NA	promoter-TSS (NM_001253912)	promoter-TSS (NM_001253912)	-523	NM_001253912	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
4.14539-5	chr4	88896567	88897066	+	0	NA	promoter-TSS (NM_000582)	promoter-TSS (NM_000582)	14	NM_001251830	6696	Hs.313	NM_000582	ENSG00000118785	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
2.07608-8	chr14	105938889	105939388	+	0	NA	promoter-TSS (NM_001270837)	promoter-TSS (NM_001270837)	-137	NR_073082	1397	Hs.534309	NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
1.4813-5	chr8	53627321	53627820	+	0	NA	promoter-TSS (NM_014781)	promoter-TSS (NM_014781)	-544	NM_001083617	9821	Hs.196102	NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
1.07349-11	chr8	112809381	112809880	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-561198	NR_125418	101927487	Hs.630004	NR_125418	ENSG00000253103	LINC01609	-	long intergenic non-protein coding RNA 1609	ncRNA
0.883098-13	chr17	79099356	79099855	+	0	NA	promoter-TSS (NR_030394)	promoter-TSS (NR_030394)	-72	NR_036151	100422915		NR_036151	ENSG00000211563	MIR3065	mir-3065	microRNA 3065	ncRNA
0.385789-24	chr4	147820747	147821246	+	0	NA	intron (NM_001317806, intron 6 of 12)	intron (NM_001317806, intron 6 of 12)	46042	NM_001317806	83894	Hs.378893	NM_031956	ENSG00000137473	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
18.9279	chr12	3403667	3404166	+	0	NA	Intergenic	Intergenic	-86599	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
1.9044-19	chr9	130186453	130186952	+	0	NA	promoter-TSS (NM_001286698)	promoter-TSS (NM_001286698)	49	NM_001286698	7633	Hs.522399	NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
1.73277-10	chr17	77965542	77966041	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-41135	NM_001271846	125058	Hs.369819	NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
0.0305075-77	chr22	44350989	44351488	+	0	NA	promoter-TSS (NM_015380)	promoter-TSS (NM_015380)	-23	NM_015380	25813	Hs.505824	NM_015380	ENSG00000100347	SAMM50	CGI-51|OMP85|SAM50|TOB55|TRG-3|YNL026W	SAMM50 sorting and assembly machinery component	protein-coding
6.47817-14	chr1	159847797	159848296	+	0	NA	intron (NM_012337, intron 8 of 11)	intron (NM_012337, intron 8 of 11)	-15599	NM_001013661	391123	Hs.647718	NM_001013661	ENSG00000243284	VSIG8	-	V-set and immunoglobulin domain containing 8	protein-coding
0.118872-8	chr18	6405155	6405654	+	0	NA	intron (NM_001330559, intron 1 of 18)	intron (NM_001330559, intron 1 of 18)	9506	NM_173464	91133	Hs.128279	NM_173464	ENSG00000154655	L3MBTL4	HsT1031	l(3)mbt-like 4 (Drosophila)	protein-coding
1.86419-9	chr14	52781156	52781655	+	0	NA	exon (NM_000956, exon 1 of 2)	exon (NM_000956, exon 1 of 2)	389	NM_000956	5732	Hs.2090	NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
1.35489-12	chr17	17108592	17109091	+	0	NA	intron (NM_178836, intron 1 of 1)	CpG	805	NM_178836	201164	Hs.729079	NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
8.44664-3	chr10	43047301	43047800	+	0	NA	non-coding (NR_026777, exon 3 of 8)	non-coding (NR_026777, exon 3 of 8)	768	NR_026777	100129482	Hs.278064	NR_026777	ENSG00000234420	ZNF37BP	KOX21|ZNF37B	zinc finger protein 37B, pseudogene	pseudo
1.35489-14	chr5	6377874	6378373	+	0	NA	intron (NM_032286, intron 1 of 3)	intron (NM_032286, intron 1 of 3)	516	NM_032286	84246	Hs.13885	NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
13.2057	chr6	145823384	145823883	+	0	NA	Intergenic	Intergenic	-232372	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
6.03801-9	chr15	22384264	22384763	+	0	NA	TTS (NR_110481)	TTS (NR_110481)	2131	NM_001005241	283694	Hs.525666	NM_001005241	ENSG00000183706	OR4N4	OR15-1|OR15-5	olfactory receptor family 4 subfamily N member 4	protein-coding
18.3565	chr8	125214502	125215001	+	0	NA	intron (NR_125420, intron 2 of 2)	intron (NR_125420, intron 2 of 2)	-30988	NR_103547	157376	Hs.662360	NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
4.57175-6	chr7	1083852	1084351	+	0	NA	promoter-TSS (NM_001303473)	promoter-TSS (NM_001303473)	-108	NM_001303473	115330	Hs.585007	NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
0.899095-10	chr14	53173398	53173897	+	0	NA	promoter-TSS (NM_002806)	promoter-TSS (NM_002806)	-249	NM_002806	5706	Hs.156171	NM_002806	ENSG00000100519	PSMC6	CADP44|HEL-S-73|P44|SUG2|p42	proteasome 26S subunit, ATPase 6	protein-coding
0.856568-22	chr3	39093155	39093937	+	0	NA	promoter-TSS (NM_001346226)	promoter-TSS (NM_001346226)	69	NM_001303402	57599	Hs.109778	NM_020839	ENSG00000114742	WDR48	P80|SPG60|UAF1	WD repeat domain 48	protein-coding
0.877779-5	chr6	37019154	37019653	+	0	NA	Intergenic	Intergenic	45980	NM_173558	221472	Hs.509664	NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
0.856568-36	chr5	38441753	38442252	+	0	NA	intron (NM_152403, intron 17 of 21)	intron (NM_152403, intron 17 of 21)	-3576	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
0.491485-15	chrX	136134853	136135352	+	0	NA	Intergenic	CpG	-21269	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2	G protein-coupled receptor 101	protein-coding
22.3958-2	chr8	137706825	137707324	+	0	NA	Intergenic	LTR1|LTR|ERV1	718757	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
2.43364-14	chr2	153782307	153782806	+	0	NA	Intergenic	LTR50|LTR|ERVL	208149	NM_152522	151188	Hs.643580	NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
2.18963-9	chr7	138793672	138794171	+	0	NA	exon (NM_020119, exon 1 of 13)	exon (NM_020119, exon 1 of 13)	544	NM_024625	56829	Hs.133512	NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
4.28291-4	chr3	188364306	188364805	+	0	NA	intron (NM_001167671, intron 6 of 10)	intron (NM_001167671, intron 6 of 10)	-42014	NR_029502	407020		NR_029502	ENSG00000207651	MIR28	MIRN28|hsa-mir-28|miR-28	microRNA 28	ncRNA
0.76756-23	chr12	120666457	120666956	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	21258	NM_025157	5829	Hs.446336	NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
16.1979	chr10	21448824	21449323	+	0	NA	intron (NM_001173484, intron 2 of 6)	intron (NM_001173484, intron 2 of 6)	-13585	NM_001010896	387638	Hs.664110	NM_001010896	ENSG00000204683	C10orf113	bA165O3.1	chromosome 10 open reading frame 113	protein-coding
4.37707-7	chr8	125739827	125740326	+	0	NA	intron (NM_014751, intron 1 of 13)	CpG	672	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
36.216	chr13	105614759	105615258	+	0	NA	Intergenic	Intergenic	-503208	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
5.12862-9	chr12	29306164	29306663	+	0	NA	intron (NM_001271783, intron 1 of 11)	L2b|LINE|L2	4477	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
2.5649-12	chr11	75445796	75446295	+	0	NA	Intergenic	Intergenic	17181	NM_025098	80168	Hs.288568	NM_025098	ENSG00000166391	MOGAT2	DGAT2L5|DGAT2L5.|MGAT2|hDC5	monoacylglycerol O-acyltransferase 2	protein-coding
1.20331-3	chr14	93605421	93605920	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-23406	NM_001142593	3705	Hs.308122	NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
8.01343-8	chr10	114871583	114872082	+	0	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	66718	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
0.0261362-18	chr15	90701120	90701619	+	0	NA	Intergenic	Intergenic	-26783	NM_001324030	10509	Hs.474935	NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
36.6756	chr5	10932915	10933414	+	0	NA	Intergenic	Intergenic	-171777	NM_001291963	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
0.0744648-24	chr6	44205453	44205952	+	0	NA	Intergenic	CpG	-8201	NM_001271970	3326	Hs.509736	NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
3.7366	chr17	55601262	55601761	+	0	NA	promoter-TSS (NR_110808)	promoter-TSS (NR_110808)	-553	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
5.73489-6	chr3	35705950	35706449	+	0	NA	intron (NM_016300, intron 1 of 19)	intron (NM_016300, intron 1 of 19)	-14914	NM_001267618	10777	Hs.475902	NM_016300	ENSG00000172995	ARPP21	ARPP-21|R3HDM3|RCS|TARPP	cAMP regulated phosphoprotein 21	protein-coding
16.5365	chr11	125245891	125246390	+	0	NA	intron (NM_022062, intron 5 of 12)	intron (NM_022062, intron 5 of 12)	-118970	NM_001301851	403312	Hs.450611	NM_203452		LOC403312	-	putative uncharacterized protein MGC39545	protein-coding
59.3181	chr6	93597933	93598432	+	0	NA	Intergenic	Intergenic	531118	NM_001288629	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
0.195421-25	chr22	39886064	39886563	+	0	NA	3' UTR (NM_002409, exon 2 of 2)	3' UTR (NM_002409, exon 2 of 2)	3084	NM_001098270	4248	Hs.276808	NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	protein-coding
1.02373-17	chr15	63796029	63796528	+	0	NA	promoter-TSS (NM_001256702)	promoter-TSS (NM_001256702)	-432	NR_046341	9960	Hs.458499	NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
1.75224-8	chr6	80657017	80657516	+	0	NA	promoter-TSS (NM_022726)	promoter-TSS (NM_022726)	49	NM_022726	6785	Hs.101915	NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
0.8302-7	chr1	103016253	103016752	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-553712	NR_110211	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
0.91515-16	chr10	26986586	26987085	+	0	NA	intron (NM_014317, intron 1 of 11)	CpG	482	NM_001321978	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
7.87812-12	chr13	113547037	113547536	+	0	NA	Intergenic	Intergenic	75666	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
0.634863-19	chr1	76081341	76081840	+	0	NA	5' UTR (NM_001320283, exon 1 of 22)	5' UTR (NM_001320283, exon 1 of 22)	104	NM_001320283	204962	Hs.654821	NM_152697	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44 member 5	protein-coding
0.0217692-11	chr16	2653078	2653577	+	0	NA	promoter-TSS (NR_015441)	promoter-TSS (NR_015441)	-58	NR_015441	652276	Hs.720448	NR_015441	ENSG00000215154	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
10.9637	chr15	100520857	100521356	+	0	NA	intron (NM_139057, intron 20 of 21)	intron (NM_139057, intron 20 of 21)	173878	NR_135737	400464	Hs.187134	NM_001013670	ENSG00000259363	LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
0.447935-6	chr16	24119629	24120128	+	0	NA	intron (NM_212535, intron 7 of 16)	SVA_F|Other|Other	-94559	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
1.55523-5	chrX	106961281	106961780	+	0	NA	intron (NM_001318470, intron 2 of 3)	intron (NM_001318470, intron 2 of 3)	-1239	NM_004089	1831	Hs.522074	NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
2.06908-6	chr7	129789361	129789860	+	0	NA	Intergenic	Intergenic	55728	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
2.0621-2	chr10	1594110	1594609	+	0	NA	intron (NR_033387, intron 1 of 1)	intron (NR_033387, intron 1 of 1)	25534	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
6.00326-5	chr13	43457853	43458352	+	0	NA	Intergenic	Intergenic	-11222	NR_126388	104355147	Hs.633967	NR_126388		LINC00428	-	long intergenic non-protein coding RNA 428	ncRNA
7.90485-11	chr18	56750873	56751821	+	0	NA	Intergenic	Intergenic	48436	NR_024021	390858	Hs.716280	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
6.51695-10	chr4	88832404	88832903	+	0	NA	Intergenic	Intergenic	-64149	NM_001040060	6696	Hs.313	NM_000582	ENSG00000118785	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
3.64516-8	chr6	3229248	3229747	+	0	NA	Intergenic	CpG-21645	-1529	NM_178012	347733	Hs.300701	NM_178012	ENSG00000137285	TUBB2B	PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
13.9903-3	chr11	72497373	72497872	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	3047	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
0.0744648	chr3	72207807	72208306	+	0	NA	intron (NR_038221, intron 1 of 2)	intron (NR_038221, intron 1 of 2)	7648	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
1.49354-15	chr11	73839553	73840052	+	0	NA	intron (NM_001286577, intron 7 of 32)	SVA_D|Other|Other	42262	NM_001286577	26005	Hs.557938	NM_015531	ENSG00000168014	C2CD3	OFD14	C2 calcium dependent domain containing 3	protein-coding
13.7986-6	chr10	123993849	123994348	+	0	NA	intron (NM_206862, intron 16 of 22)	intron (NM_206862, intron 16 of 22)	-36713	NM_144587	118663	Hs.422466	NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
0.381045-5	chr13	36920559	36921058	+	0	NA	promoter-TSS (NM_015087)	promoter-TSS (NM_015087)	126	NM_001142295	23111	Hs.440414	NM_015087	ENSG00000133104	SPG20	SPARTIN|TAHCCP1	spastic paraplegia 20 (Troyer syndrome)	protein-coding
1.21478-7	chr13	34736121	34736620	+	0	NA	Intergenic	Intergenic	344164	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
1.19186-9	chr12	32686899	32687398	+	0	NA	promoter-TSS (NM_001304480)	promoter-TSS (NM_001304480)	-79	NM_001304480	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
0.665127-12	chr4	81119013	81119512	+	0	NA	intron (NM_020226, intron 7 of 9)	CpG	605	NM_001099403	56978	Hs.373642	NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
1.58641-11	chr6	30524795	30525577	+	0	NA	exon (NM_001077497, exon 1 of 3)	exon (NM_001077497, exon 1 of 3)	185	NM_005275	2794	Hs.83147	NM_005275	ENSG00000204590	GNL1	HSR1	G protein nucleolar 1 (putative)	protein-coding
16.7778-9	chr2	241523942	241524441	+	0	NA	non-coding (NR_103792, exon 1 of 1)	non-coding (NR_103792, exon 1 of 1)	1542	NR_103792	101752400	Hs.585987	NR_103792	ENSG00000260942	CAPN10-AS1	locus959	CAPN10 antisense RNA 1 (head to head)	ncRNA
0.296531-134	chrUn_gl000216	11269	11768	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
0.419142-52	chr10	124607816	124608315	+	0	NA	TTS (NR_037911)	TTS (NR_037911)	-2374	NM_022034	50624	Hs.647182	NM_022034	ENSG00000138161	CUZD1	ERG-1|ERG1|ITMAP1|UO-44	CUB and zona pellucida like domains 1	protein-coding
6.25252-4	chr9	85721104	85721603	+	0	NA	Intergenic	L2c|LINE|L2	-43310	NM_152573	158158	Hs.129136	NM_152573	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
4.1005-10	chr20	33247378	33247877	+	0	NA	intron (NM_080476, intron 1 of 11)	SVA_D|Other|Other	17462	NM_080476	128869	Hs.253319	NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
27.3049	chr8	143371973	143372472	+	0	NA	intron (NM_001291931, intron 8 of 10)	intron (NM_001291931, intron 8 of 10)	92505	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
23.7572	chr3	129004897	129005396	+	0	NA	intron (NM_001006109, intron 2 of 6)	MLT1A0|LTR|ERVL-MaLR	7329	NM_001006109	56941	Hs.458320	NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine (hmC) binding, ES cell-specific	protein-coding
9.87163-11	chr9	13164872	13165371	+	0	NA	intron (NM_001330637, intron 22 of 46)	intron (NM_001330637, intron 22 of 46)	114442	NM_003829	8777	Hs.169378	NM_003829	ENSG00000107186	MPDZ	HYC2|MUPP1	multiple PDZ domain crumbs cell polarity complex component	protein-coding
0.0612309-19	chr2	53019996	53020495	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-90492	NR_039630	100616431		NR_039630	ENSG00000264975	MIR4431	-	microRNA 4431	ncRNA
1.02923-17	chr5	132202303	132202802	+	0	NA	promoter-TSS (NM_001288827)	promoter-TSS (NM_001288827)	24	NM_001288825	2661	Hs.25022	NM_005260	ENSG00000164404	GDF9	-	growth differentiation factor 9	protein-coding
1.22053-2	chr15	65677820	65678319	+	0	NA	intron (NM_020962, intron 18 of 19)	intron (NM_020962, intron 18 of 19)	-7691	NM_004884	9543	Hs.128292	NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
1.72631-4	chr12	72079703	72080202	+	0	NA	promoter-TSS (NM_018279)	promoter-TSS (NM_018279)	74	NM_018279	55266	Hs.644802	NM_018279	ENSG00000139291	TMEM19	-	transmembrane protein 19	protein-coding
1.89767-10	chr13	28534726	28535225	+	0	NA	Intergenic	CpG	7312	NR_135254	100132234	Hs.197435	NR_135254	ENSG00000260704	LINC00543	-	long intergenic non-protein coding RNA 543	ncRNA
2.81498-13	chr7	26491603	26492102	+	0	NA	intron (NR_015364, intron 1 of 4)	L2|LINE|L2	48744	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
18.729-5	chr20	31162685	31163184	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	9941	NM_001256798	140688	Hs.516978	NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4 like	protein-coding
0.172766-40	chr12	47937391	47937890	+	0	NA	Intergenic	Intergenic	162204	NM_001146076	79657	Hs.437855	NM_024604	ENSG00000005175	RPAP3	-	RNA polymerase II associated protein 3	protein-coding
2.0412-11	chr1	59249335	59249834	+	0	NA	5' UTR (NM_002228, exon 1 of 1)	5' UTR (NM_002228, exon 1 of 1)	201	NM_002228	3725	Hs.696684	NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
2.41845-8	chr8	19690527	19691026	+	0	NA	exon (NM_018142, exon 12 of 17)	exon (NM_018142, exon 12 of 17)	15858	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
5.867-16	chr18	3013202	3013701	+	0	NA	Intergenic	Intergenic	-1506	NM_014646	9663	Hs.132342	NM_014646	ENSG00000101577	LPIN2	-	lipin 2	protein-coding
12.8316	chr6	53775633	53776132	+	0	NA	intron (NM_018214, intron 10 of 13)	intron (NM_018214, intron 10 of 13)	-18898	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
42.2113	chr2	231544071	231544570	+	0	NA	Intergenic	Intergenic	20924	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
0.371573-14	chr11	120434266	120434765	+	0	NA	promoter-TSS (NM_001282473)	promoter-TSS (NM_001282473)	-630	NM_001282473	2900	Hs.538738	NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
1.41463	chr6	57606910	57607409	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	352229	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
9.87163-24	chr3	37643284	37643783	+	0	NA	intron (NM_002207, intron 15 of 27)	MSTB1|LTR|ERVL-MaLR	149720	NM_002207	3680	Hs.113157	NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
12.3882	chr7	145699694	145700193	+	0	NA	Intergenic	Intergenic	-113510	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
1.52427-20	chr14	21133467	21133966	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-18620	NM_001145	283	Hs.283749	NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
34.4129	chr8	67052888	67053387	+	0	NA	intron (NM_184087, intron 4 of 4)	intron (NM_184087, intron 4 of 4)	13859	NM_184087	84675	Hs.85524	NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
0.649968-33	chr12	120796087	120796586	+	0	NA	intron (NM_002442, intron 7 of 14)	intron (NM_002442, intron 7 of 14)	10647	NM_002442	4440	Hs.158311	NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
0.5061-3	chr11	35165631	35166130	+	0	NA	intron (NM_001202556, intron 1 of 7)	intron (NM_001202556, intron 1 of 7)	5463	NM_001001389	960	Hs.502328	NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
2.52588-12	chr9	21993964	21994463	+	0	NA	promoter-TSS (NR_047536)	promoter-TSS (NR_047536)	277	NM_058195	1029	Hs.512599	NM_000077	ENSG00000147889	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
0.141246-5	chr7	20638026	20638525	+	0	NA	Intergenic	Intergenic	-16970	NM_001163941	340273	Hs.404102	NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP binding cassette subfamily B member 5	protein-coding
2.51037-16	chr5	1865108	1865607	+	0	NA	Intergenic	Intergenic	-8675	NR_104602	101929034	Hs.128032	NR_104602	ENSG00000250417	LINC02116	-	long intergenic non-protein coding RNA 2116	ncRNA
2.29885	chr14	45433673	45434172	+	0	NA	intron (NM_015091, intron 1 of 18)	intron (NM_015091, intron 1 of 18)	2529	NM_001308120	23116	Hs.371078	NM_015091	ENSG00000198718	FAM179B	KIAA0423	family with sequence similarity 179 member B	protein-coding
9.1364-20	chr3	17893641	17894140	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	109454	NR_135536	105376975	Hs.543238	NR_135536		LOC105376975	-	uncharacterized LOC105376975	ncRNA
3.29754-14	chr12	50560621	50561120	+	0	NA	intron (NM_001331069, intron 1 of 11)	CpG	446	NR_138534	91012	Hs.270525	NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
6.9037-4	chr8	28564649	28565148	+	0	NA	intron (NR_073468, intron 1 of 4)	MIRb|SINE|MIR	5908	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
0.15923-30	chr8	94574068	94574567	+	0	NA	intron (NR_033858, intron 6 of 10)	intron (NR_033858, intron 6 of 10)	138344	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
11.2148-4	chr5	18310328	18310827	+	0	NA	Intergenic	SVA_D|Other|Other	503194	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
2.29148-5	chr15	52578685	52579184	+	0	NA	intron (NM_018728, intron 1 of 40)	SVA_D|Other|Other	9061	NM_018728	55930	Hs.487036	NM_018728	ENSG00000128833	MYO5C	-	myosin VC	protein-coding
4.88117	chr15	22511020	22511519	+	0	NA	Intergenic	Intergenic	2011	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
1.81115-11	chr17	48942886	48943385	+	0	NA	promoter-TSS (NR_038458)	promoter-TSS (NR_038458)	580	NM_001243885	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
4.65974-8	chr13	59193845	59194344	+	0	NA	Intergenic	Intergenic	-386843	NR_132367	106144531	Hs.736640	NR_132367	ENSG00000232954	LINC00374	-	long intergenic non-protein coding RNA 374	ncRNA
0.736576-10	chr14	71247336	71247835	+	0	NA	intron (NM_001284231, intron 1 of 11)	intron (NM_001284231, intron 1 of 11)	2584	NM_001284232	4293	Hs.445496	NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
11.9246	chr22	16201243	16201742	+	0	NA	intron (NR_132385, intron 2 of 2)	intron (NR_132385, intron 2 of 2)	-8483	NR_122113	503637	Hs.744284	NR_122113	ENSG00000206195	DUXAP8	-	double homeobox A pseudogene 8	pseudo
0.301184-14	chr14	50318897	50319396	+	0	NA	intron (NM_004713, intron 1 of 32)	intron (NM_004713, intron 1 of 32)	775	NM_004713	9147	Hs.655964	NM_004713	ENSG00000165525	NEMF	NY-CO-1|SDCCAG1	nuclear export mediator factor	protein-coding
1.69411-2	chr20	61847442	61847941	+	0	NA	promoter-TSS (NM_017798)	promoter-TSS (NM_017798)	-153	NM_017798	54915	Hs.744852	NM_017798	ENSG00000149658	YTHDF1	C20orf21	YTH N6-methyladenosine RNA binding protein 1	protein-coding
4.12289-10	chr20	61020813	61021312	+	0	NA	Intergenic	Intergenic	-18433	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
2.11832-8	chr15	57619145	57619644	+	0	NA	Intergenic	Intergenic	8058	NR_120337	101928611	Hs.569495	NR_120337		LINC01413	-	long intergenic non-protein coding RNA 1413	ncRNA
0.00434512-36	chr6	170138651	170139150	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	12779	NM_174910	6991	Hs.733746	NM_174910	ENSG00000184786	TCTE3	TCTEX1D3	t-complex-associated-testis-expressed 3	protein-coding
0.132283-45	chrX	122911482	122911981	+	0	NA	Intergenic	Intergenic	-44827	NM_001081550	57187	Hs.149991	NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
10.9963	chr18	4917755	4918254	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	279251	NM_001145194	642597	Hs.437160	NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
1.29011-4	chr14	85910987	85911486	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	50977	NR_102738	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
47.9317	chr6	148634564	148635063	+	0	NA	intron (NM_001346505, intron 1 of 19)	intron (NM_001346505, intron 1 of 19)	-28916	NM_015278	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
0.070049-70	chr8	128053927	128054426	+	0	NA	Intergenic	Intergenic	28777	NR_045262	100750225	Hs.571530	NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1	prostate cancer associated transcript 1 (non-protein coding)	ncRNA
0.400052-43	chr14	65103233	65103732	+	0	NA	Intergenic	Intergenic	-67644	NM_001308147	26030	Hs.509637	NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
1.44481-13	chr15	32635529	32636028	+	0	NA	Intergenic	Intergenic	59715	NM_001282493	653125		NM_001282493	ENSG00000249931	GOLGA8K	-	golgin A8 family member K	protein-coding
1.6877-14	chr2	203777085	203777584	+	0	NA	promoter-TSS (NM_001322428)	promoter-TSS (NM_001322428)	-124	NM_001322428	79800	Hs.444982	NM_024744	ENSG00000138380	CARF	ALS2CR8|NYD-SP24	calcium responsive transcription factor	protein-coding
8.53872	chr8	134584166	134584665	+	0	NA	promoter-TSS (NM_003033)	promoter-TSS (NM_003033)	-232	NM_003033	6482	Hs.374257	NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
17.8781-9	chr13	111208097	111208596	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	5738	NM_017817	55647	Hs.743563	NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
1.22629-6	chr17	21282545	21283044	+	0	NA	intron (NM_021012, intron 1 of 2)	intron (NM_021012, intron 1 of 2)	3095	NM_021012	3768	Hs.200629	NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium voltage-gated channel subfamily J member 12	protein-coding
3.60514-7	chr2	160778221	160778720	+	0	NA	Intergenic	Intergenic	-17203	NM_001198759	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
1.00727-4	chr1	203142679	203143178	+	0	NA	intron (NM_004997, intron 3 of 10)	intron (NM_004997, intron 3 of 10)	2014	NM_004997	4608	Hs.927	NM_004997	ENSG00000133055	MYBPH	-	myosin binding protein H	protein-coding
6.03801	chr6	41392082	41392581	+	0	NA	Intergenic	Intergenic	-77851	NR_120347	103106903	Hs.563396	NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
1.82435-9	chr12	114922041	114922540	+	0	NA	Intergenic	SVA_B|Other|Other	-76043	NM_000192	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
2.29885-7	chr5	176882188	176882687	+	0	NA	exon (NM_001174102, exon 2 of 3)	exon (NM_001174102, exon 2 of 3)	7111	NM_001174102	80758	Hs.534492	NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
0.741724-11	chr7	109716693	109717192	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-116672	NR_003024	442720	Hs.530096	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	eukaryotic translation initiation factor 3 subunit I pseudogene 1	pseudo
4.4855-12	chrX	17557732	17558231	+	0	NA	intron (NR_135631, intron 1 of 1)	MLT1I|LTR|ERVL-MaLR	11423	NR_135631	101928389	Hs.686933	NR_135631	ENSG00000235834	LOC101928389	-	uncharacterized LOC101928389	ncRNA
0.624821-13	chr14	101038071	101038570	+	0	NA	Intergenic	Intergenic	-2189	NM_020836	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
2.26214-2	chr3	126061811	126062310	+	0	NA	3' UTR (NM_014079, exon 3 of 3)	3' UTR (NM_014079, exon 3 of 3)	14176	NM_014079	28999	Hs.272215	NM_014079	ENSG00000163884	KLF15	KKLF	Kruppel like factor 15	protein-coding
4.81486-6	chr2	216176035	216176966	+	0	NA	promoter-TSS (NM_004044)	promoter-TSS (NM_004044)	-179	NM_004044	471	Hs.90280	NM_004044	ENSG00000138363	ATIC	AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
19.9568	chr8	81064217	81064716	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	18969	NR_105036	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
8.96196-14	chr2	222864925	222865424	+	0	NA	Intergenic	Intergenic	-297692	NM_153038	151278	Hs.350729	NM_153038	ENSG00000163081	CCDC140	-	coiled-coil domain containing 140	protein-coding
1.24939-6	chr20	61505376	61505875	+	0	NA	Intergenic	LTR13|LTR|ERVK	-12510	NM_006602	10732	Hs.126248	NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
0.163737-12	chr2	24163379	24163878	+	0	NA	intron (NM_181713, intron 1 of 6)	CpG	252	NM_181713	165324	Hs.591576	NM_181713	ENSG00000173960	UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
2.16096-2	chr8	128951577	128952076	+	0	NA	non-coding (NR_003367, exon 3 of 9)	non-coding (NR_003367, exon 3 of 9)	9143	NR_103558	641384	Hs.629674	NM_001037234	ENSG00000280055	TMEM75	-	transmembrane protein 75	ncRNA
0.264104-8	chrX	103381001	103381500	+	0	NA	intron (NM_001012755, intron 1 of 1)	intron (NM_001012755, intron 1 of 1)	-11933	NR_039980	286437	Hs.656786	NR_039980		LOC286437	-	uncharacterized LOC286437	ncRNA
0.609802-14	chr12	106641577	106642076	+	0	NA	promoter-TSS (NM_006825)	promoter-TSS (NM_006825)	-113	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
2.35077-15	chr12	54673848	54674347	+	0	NA	promoter-TSS (NM_012117)	promoter-TSS (NM_012117)	-182	NM_012117	23468	Hs.349283	NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A	chromobox 5	protein-coding
12.5806-2	chr6	137280571	137281070	+	0	NA	Intergenic	LTR1D|LTR|ERV1	33548	NR_027994	100294720	Hs.520412	NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed 1	ncRNA
10.4239	chr7	146776742	146777241	+	0	NA	intron (NM_014141, intron 4 of 23)	intron (NM_014141, intron 4 of 23)	17710	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
0.0261362-52	chr1	237032098	237032597	+	0	NA	intron (NM_001291939, intron 21 of 31)	intron (NM_001291939, intron 21 of 31)	73766	NM_001291939	4548	Hs.498187	NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
4.7237-6	chr19	6424905	6425404	+	0	NA	promoter-TSS (NM_003685)	promoter-TSS (NM_003685)	-332	NM_003685	8570	Hs.727344	NM_003685	ENSG00000088247	KHSRP	FBP2|FUBP2|KSRP	KH-type splicing regulatory protein	protein-coding
8.38632-2	chr4	11490231	11490730	+	0	NA	Intergenic	L2a|LINE|L2	-59943	NM_005114	9957	Hs.507348	NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
0.347983-2	chr5	148819369	148819868	+	0	NA	Intergenic	Intergenic	9409	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
0.452752-12	chr8	93631566	93632065	+	0	NA	intron (NR_125827, intron 3 of 4)	intron (NR_125827, intron 3 of 4)	35907	NR_125827	102724710	Hs.125714	NR_125827	ENSG00000253634	LOC102724710	-	uncharacterized LOC102724710	ncRNA
2.79014-12	chr2	205119811	205120310	+	0	NA	Intergenic	Intergenic	-290456	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
2.1254-22	chr7	149471382	149471881	+	0	NA	Intergenic	Intergenic	-1063	NM_207336	168544	Hs.726477	NM_207336	ENSG00000181444	ZNF467	EZI|Zfp467	zinc finger protein 467	protein-coding
12.2988-3	chr6	92308115	92308614	+	0	NA	Intergenic	LTR51|LTR|ERV1	76986	NR_039786	100616174		NR_039786	ENSG00000263734	MIR4643	-	microRNA 4643	ncRNA
0.0261362-29	chr4	144508793	144509292	+	0	NA	intron (NM_001168235, intron 6 of 7)	LTR78|LTR|ERV1	28417	NR_003675	441046	Hs.135705	NM_001011539	ENSG00000236296	GUSBP5	GYPELOC441046	glucuronidase, beta pseudogene 5	pseudo
0.952845-24	chr15	65230311	65230810	+	0	NA	intron (NM_182703, intron 9 of 14)	L1MC3|LINE|L1	26459	NM_182703	348094	Hs.207157	NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
0.452752-8	chr2	68384767	68385266	+	0	NA	promoter-TSS (NM_138458)	promoter-TSS (NM_138458)	54	NR_138146	56902	Hs.262858	NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
0.310503-23	chrX	14648758	14649257	+	0	NA	intron (NM_001171942, intron 9 of 10)	MLT1A1|LTR|ERVL-MaLR	101587	NM_001118885	2742	Hs.2700	NM_002063	ENSG00000101958	GLRA2	GLR	glycine receptor alpha 2	protein-coding
6.0206-5	chr8	120844132	120844631	+	0	NA	intron (NM_003184, intron 1 of 25)	AluSg|SINE|Alu	693	NM_003184	6873	Hs.122752	NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
5.27244-7	chr4	109089660	109090159	+	0	NA	5' UTR (NM_016269, exon 1 of 12)	5' UTR (NM_016269, exon 1 of 12)	203	NM_001130713	51176	Hs.743478	NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
0.963675-6	chr4	80334571	80335070	+	0	NA	Intergenic	Intergenic	-5448	NM_033214	2712	Hs.98008	NM_033214	ENSG00000196475	GK2	GKP2|GKTA	glycerol kinase 2	protein-coding
2.18963-4	chr15	34330566	34331065	+	0	NA	intron (NM_020371, intron 1 of 5)	CpG	488	NM_020371	57099	Hs.555966	NM_020371	ENSG00000169857	AVEN	PDCD12	apoptosis and caspase activation inhibitor	protein-coding
4.74955-5	chr6	71123664	71124163	+	0	NA	intron (NM_020819, intron 1 of 20)	intron (NM_020819, intron 1 of 20)	806	NM_001330995	57579	Hs.211700	NM_020819	ENSG00000082269	FAM135A	KIAA1411	family with sequence similarity 135 member A	protein-coding
2.58848-3	chr2	21212801	21213300	+	0	NA	Intergenic	Intergenic	53895	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4|apoB-100|apoB-48	apolipoprotein B	protein-coding
5.27244-8	chr10	111717069	111717568	+	0	NA	intron (NR_038943, intron 2 of 4)	intron (NR_038943, intron 2 of 4)	-34007	NM_001324132	7511	Hs.390623	NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
2.35824-2	chr5	74567527	74568026	+	0	NA	Intergenic	SVA_D|Other|Other	-35073	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
0.231917-2	chr3	51533142	51533920	+	0	NA	intron (NM_014703, intron 1 of 24)	CpG	487	NM_014703	9730	Hs.716623	NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
0.990869-10	chr10	65736183	65736682	+	0	NA	Intergenic	Intergenic	-454597	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
0.639892-15	chr9	135450347	135450846	+	0	NA	Intergenic	Intergenic	-7397	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
20.3245	chr9	126531903	126532402	+	0	NA	intron (NM_024820, intron 3 of 20)	intron (NM_024820, intron 3 of 20)	160265	NM_020946	57706	Hs.744995	NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
7.47147-20	chr4	90032108	90032847	+	0	NA	Intergenic	CpG	-1491	NM_145715	166815	Hs.58924	NM_145715	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
2.02732-9	chr7	149790936	149791435	+	0	NA	Intergenic	MIR|SINE|MIR	208884	NM_001164459	653857	Hs.664579	NM_001164458	ENSG00000106526	ACTR3C	ARP11	ARP3 actin-related protein 3 homolog C	protein-coding
1.91789-14	chr1	1003854	1004353	+	0	NA	Intergenic	CpG	5584	NM_001205252	401934	Hs.568137	NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
0.423927-2	chr5	166940289	166940788	+	0	NA	intron (NM_001122679, intron 2 of 28)	intron (NM_001122679, intron 2 of 28)	228695	NM_001122679	57451	Hs.631957	NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2|ten-2	teneurin transmembrane protein 2	protein-coding
0.385789	chrX	106898162	106898661	+	0	NA	Intergenic	Intergenic	26757	NM_001204402	5631	Hs.56	NM_002764	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
0.777937-7	chr7	81099266	81099765	+	0	NA	Intergenic	Intergenic	91620	NR_136264	105369146	Hs.730390	NR_136264		LOC105369146	-	uncharacterized LOC105369146	ncRNA
2.05512-10	chr15	74512695	74513194	+	0	NA	Intergenic	Intergenic	-10898	NM_001199040	64220	Hs.24553	NM_022369	ENSG00000137868	STRA6	MCOPCB8|MCOPS9|PP14296	stimulated by retinoic acid 6	protein-coding
7.01147-15	chr7	105698347	105698846	+	0	NA	Intergenic	Intergenic	54195	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
6.03801-3	chr16	88022148	88022647	+	0	NA	intron (NM_017869, intron 4 of 11)	intron (NM_017869, intron 4 of 11)	18773	NM_001173543	54971	Hs.461705	NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
0.0877392-12	chr14	21723949	21724448	+	0	NA	intron (NM_001077443, intron 1 of 7)	L2a|LINE|L2	13440	NM_004500	3183	Hs.508848	NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
8.26814-28	chr10	126736539	126737038	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-15349	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
6.09065-5	chr2	46807515	46808014	+	0	NA	promoter-TSS (NR_104182)	promoter-TSS (NR_104182)	-387	NR_104182	100506142	Hs.658541	NR_104182	ENSG00000250116	LOC100506142	-	uncharacterized LOC100506142	ncRNA
1.92465-17	chr2	676582	677081	+	0	NA	intron (NM_152834, intron 1 of 4)	CpG	608	NM_152834	129787	Hs.43899	NM_152834	ENSG00000151353	TMEM18	-	transmembrane protein 18	protein-coding
4.89455-12	chr19	33928801	33929300	+	0	NA	intron (NM_001166056, intron 7 of 12)	intron (NM_001166056, intron 7 of 12)	63620	NM_001252296	1054	Hs.429666	NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT/enhancer binding protein gamma	protein-coding
14.045	chr7	22826044	22826543	+	0	NA	Intergenic	Intergenic	36178	NM_019059	54543	Hs.112318	NM_019059	ENSG00000196683	TOMM7	TOM7	translocase of outer mitochondrial membrane 7	protein-coding
12.7246-5	chr8	145578058	145578557	+	0	NA	TTS (NM_012162)	TTS (NM_012162)	284	NM_001252402	340393	Hs.122231	NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
0.609802-21	chr18	21211576	21212075	+	0	NA	intron (NM_173505, intron 5 of 9)	intron (NM_173505, intron 5 of 9)	31024	NM_001308238	147463	Hs.355689	NM_173505	ENSG00000154065	ANKRD29	-	ankyrin repeat domain 29	protein-coding
6.10834-3	chr2	242641999	242642498	+	0	NA	intron (NM_032329, intron 1 of 7)	CpG	814	NM_032329	84289	Hs.529172	NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
1.10698-20	chr6	56611431	56611930	+	0	NA	intron (NM_001144769, intron 4 of 96)	intron (NM_001144769, intron 4 of 96)	96783	NM_183380	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
2.11832-13	chr16	85752128	85752627	+	0	NA	intron (NM_206967, intron 2 of 3)	intron (NM_206967, intron 2 of 3)	22929	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
3.09804	chr2	175636210	175636709	+	0	NA	Intergenic	Intergenic	-7259	NM_000079	1134	Hs.434479	NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
12.9243	chr2	212766088	212766587	+	0	NA	intron (NM_005235, intron 3 of 27)	intron (NM_005235, intron 3 of 27)	524747	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
14.9485-6	chr4	103790109	103790862	+	0	NA	promoter-TSS (NM_181890)	promoter-TSS (NM_181890)	350	NM_001008388	493856	Hs.444955	NM_001008388	ENSG00000145354	CISD2	ERIS|Miner1|NAF-1|WFS2|ZCD2	CDGSH iron sulfur domain 2	protein-coding
1.02373-5	chr12	112546290	112546789	+	0	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	96	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
0.109954-26	chr5	33440995	33441494	+	0	NA	exon (NM_001258437, exon 2 of 20)	exon (NM_001258437, exon 2 of 20)	362	NM_152295	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
0.491485-7	chr13	37462116	37462615	+	0	NA	intron (NM_005905, intron 1 of 5)	THE1D|LTR|ERVL-MaLR	32044	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
0.0524306-6	chr1	61890585	61891084	+	0	NA	intron (NM_005595, intron 9 of 9)	intron (NM_005595, intron 9 of 9)	-171644	NR_104180	645030	Hs.632410	NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
8.06875-13	chr14	53622615	53623114	+	0	NA	intron (NR_110062, intron 1 of 2)	intron (NR_110062, intron 1 of 2)	2792	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
9.0309-14	chr20	48554604	48555103	+	0	NA	intron (NM_018683, intron 1 of 5)	intron (NM_018683, intron 1 of 5)	1939	NM_018683	55905	Hs.144949	NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
3.1158-2	chr22	22992167	22992666	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	3634	NM_199127	91227	Hs.450000	NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
3.21482-2	chr12	117717272	117717771	+	0	NA	intron (NM_001204218, intron 8 of 29)	intron (NM_001204218, intron 8 of 29)	25336	NM_001204213	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
6.30784-10	chr2	106809671	106810555	+	0	NA	intron (NR_045607, intron 1 of 13)	CpG	682	NM_001253875	80146	Hs.469561	NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD	UDP-glucuronate decarboxylase 1	protein-coding
7.28158-9	chr10	134332022	134332521	+	0	NA	Intergenic	Intergenic	-19012	NM_005539	3632	Hs.523360	NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
18.2974-2	chr1	213311673	213312172	+	0	NA	intron (NM_001136138, intron 5 of 13)	L1PA15|LINE|L1	87347	NM_001136138	26750	Hs.591416	NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
14.7625-3	chr4	2963668	2964167	+	0	NA	intron (NM_003703, intron 1 of 18)	MIRb|SINE|MIR	1316	NM_003703	8602	Hs.627133	NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
16.4975-2	chr2	235926022	235926521	+	0	NA	intron (NM_014521, intron 2 of 5)	intron (NM_014521, intron 2 of 5)	65643	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
1.30768	chr5	14685694	14686193	+	0	NA	intron (NM_138348, intron 4 of 6)	intron (NM_138348, intron 4 of 6)	21189	NM_138348	90268	Hs.406335	NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM	OTU deubiquitinase with linear linkage specificity	protein-coding
8.79426-13	chr8	10817504	10818003	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	75059	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
0.141246-4	chr8	119963840	119964339	+	0	NA	promoter-TSS (NM_001324095)	promoter-TSS (NM_001324095)	294	NM_002546	4982	Hs.81791	NM_002546	ENSG00000164761	TNFRSF11B	OCIF|OPG|PDB5|TR1	TNF receptor superfamily member 11b	protein-coding
5.83359-14	chr4	10020411	10020910	+	0	NA	exon (NM_020041, exon 2 of 12)	exon (NM_020041, exon 2 of 12)	2454	NM_020041	56606	Hs.444612	NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
0.0833099-54	chr1	1447152	1447651	+	0	NA	promoter-TSS (NM_001170535)	promoter-TSS (NM_001170535)	-122	NM_001170535	55210	Hs.23413	NM_018188	ENSG00000197785	ATAD3A	HAYOS	ATPase family, AAA domain containing 3A	protein-coding
23.2148	chr1	96119058	96119557	+	0	NA	Intergenic	Intergenic	143635	NR_110621	100996635	Hs.639548	NR_110621	ENSG00000228971	LOC100996635	-	uncharacterized LOC100996635	ncRNA
9.66576-14	chr7	101371279	101371778	+	0	NA	Intergenic	Intergenic	-87656	NM_001913	1523	Hs.191482	NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
0.716041-10	chr16	30204850	30205349	+	0	NA	promoter-TSS (NR_037608)	promoter-TSS (NR_037608)	-65	NM_178044	79008	Hs.728161	NM_024044	ENSG00000181625	SLX1B	GIYD2	SLX1 homolog B, structure-specific endonuclease subunit	protein-coding
6.86133-2	chr12	57273496	57273995	+	0	NA	Intergenic	SVA_B|Other|Other	54444	NM_148897	121214	Hs.380178	NM_148897	ENSG00000170426	SDR9C7	RDHS|SDR-O|SDRO	short chain dehydrogenase/reductase family 9C member 7	protein-coding
18.1531-5	chr18	33708856	33709355	+	0	NA	promoter-TSS (NM_001242875)	promoter-TSS (NM_001242875)	252	NM_001099406	25800	Hs.79136	NM_012319	ENSG00000141424	SLC39A6	LIV-1|ZIP6	solute carrier family 39 member 6	protein-coding
0.979971-29	chr18	11981976	11982475	+	0	NA	intron (NM_014214, intron 1 of 7)	intron (NM_014214, intron 1 of 7)	798	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
2.1254-15	chr12	3709081	3709580	+	0	NA	Intergenic	MIRb|SINE|MIR	-107345	NR_126055	100129223	Hs.586788	NR_126055		THCAT155	-	thyroid cancer-associated transcript 155	ncRNA
3.39135-18	chr9	7052532	7053031	+	0	NA	intron (NM_015061, intron 17 of 21)	intron (NM_015061, intron 17 of 21)	295140	NR_130707	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
0.296531-119	chr9_gl000199_random	77438	77937	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2.39578-8	chr2	77440583	77441082	+	0	NA	intron (NM_001282924, intron 3 of 3)	intron (NM_001282924, intron 3 of 3)	227741	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
5.8838-11	chr3	62510912	62511411	+	0	NA	intron (NM_183394, intron 13 of 27)	intron (NM_183394, intron 13 of 27)	-151971	NM_018008	55079	Hs.241523	NM_018008	ENSG00000153266	FEZF2	FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
10.5404	chr4	113970893	113971392	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	357	NM_020977	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
15.4516-3	chr10	99478406	99478905	+	0	NA	TTS (NM_031484)	TTS (NM_031484)	5190	NM_031484	83742	Hs.744073	NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
0.48177-46	chr4	140754239	140754738	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	167566	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
3.93619-15	chrX	9719075	9719574	+	0	NA	intron (NM_000273, intron 3 of 8)	intron (NM_000273, intron 3 of 8)	14681	NM_000273	4935	Hs.74124	NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
0.0261362-14	chr11	112192519	112193018	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	51296	NR_126004	283140	Hs.651827	NR_126004	ENSG00000250303	LOC283140	-	uncharacterized LOC283140	ncRNA
2.44125-15	chr12	76336371	76336870	+	0	NA	Intergenic	SVA_D|Other|Other	88936	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
17.167-4	chr11	84120045	84120544	+	0	NA	intron (NM_001142699, intron 7 of 27)	intron (NM_001142699, intron 7 of 27)	-91912	NM_001206769	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
7.42321-9	chr21	44567657	44568156	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-6704	NR_133677	106481742	Hs.548780	NR_133677	ENSG00000236663	FRGCA	-	FOXM1-regulated, gastric cancer associated	ncRNA
1.82435-22	chr6	169828527	169829026	+	0	NA	Intergenic	Intergenic	-174567	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
0.496351-8	chr1	85666829	85667328	+	0	NA	promoter-TSS (NM_032184)	promoter-TSS (NM_032184)	-350	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
0.649968-31	chr12	125621297	125621796	+	0	NA	intron (NM_023928, intron 17 of 17)	intron (NM_023928, intron 17 of 17)	71633	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
0.371573-16	chr11	34378433	34378932	+	0	NA	exon (NM_145804, exon 1 of 17)	exon (NM_145804, exon 1 of 17)	873	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
2.77366-7	chr16	18980506	18981005	+	0	NA	Intergenic	Intergenic	-14501	NM_001324268	79905	Hs.187377	NM_024847	ENSG00000170537	TMC7	-	transmembrane channel like 7	protein-coding
0.070049-61	chr4	86013601	86014100	+	0	NA	Intergenic	MIR|SINE|MIR	125879	NR_015359	404201	Hs.720920	NM_205857	ENSG00000180769	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	ncRNA
31.7849	chr18	26676011	26676510	+	0	NA	Intergenic	Intergenic	-918850	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
0.291884-24	chr20	61878081	61878580	+	0	NA	intron (NM_152864, intron 4 of 6)	intron (NM_152864, intron 4 of 6)	-7000	NR_024389	100192386	Hs.111539	NR_024389	ENSG00000275620	FLJ16779	-	uncharacterized LOC100192386	ncRNA
4.698-9	chr18	72124140	72124639	+	0	NA	exon (NM_001044369, exon 1 of 4)	exon (NM_001044369, exon 1 of 4)	114	NM_001044369	125704	Hs.371690	NM_001044369	ENSG00000187773	FAM69C	C18orf51	family with sequence similarity 69 member C	protein-coding
1.65579	chr6	18122707	18123206	+	0	NA	promoter-TSS (NM_198586)	promoter-TSS (NM_198586)	-105	NM_198586	378884	Hs.348351	NM_198586	ENSG00000187566	NHLRC1	EPM2A|EPM2B|MALIN|bA204B7.2	NHL repeat containing E3 ubiquitin protein ligase 1	protein-coding
9.78811-4	chr8	60973977	60974476	+	0	NA	Intergenic	Intergenic	219756	NR_135821	767	Hs.654388	NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
4.90797-6	chr3	118259223	118259722	+	0	NA	intron (NR_135547, intron 3 of 3)	LTR5B|LTR|ERVK	-101143	NR_135573	101926968	Hs.518185	NR_135573		LOC101926968	-	uncharacterized LOC101926968	ncRNA
3.8934-12	chr20	12571676	12572175	+	0	NA	Intergenic	L2|LINE|L2	345686	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
8.32683-6	chr10	112545854	112546353	+	0	NA	intron (NM_001134363, intron 5 of 13)	intron (NM_001134363, intron 5 of 13)	84559	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
14.7625	chr18	42995470	42995969	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	91282	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
0.347983-8	chr11	88025585	88026084	+	0	NA	TTS (NM_001814)	TTS (NM_001814)	45121	NM_001814	1075	Hs.128065	NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
0.996329-37	chr2	113998278	113998777	+	0	NA	TTS (NR_047570)	TTS (NR_047570)	4681	NR_015377	654433	Hs.656660	NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
0.888424-30	chr7	107607139	107607638	+	0	NA	intron (NM_002291, intron 13 of 33)	intron (NM_002291, intron 13 of 33)	36416	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
2.60428-14	chr7	157622827	157623326	+	0	NA	intron (NM_130843, intron 11 of 21)	L1MC4|LINE|L1	-24201	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
17.7989	chr13	48732306	48732805	+	0	NA	Intergenic	Intergenic	-63278	NM_014166	29079	Hs.181112	NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
2.88193-11	chr5	172192146	172192645	+	0	NA	Intergenic	Intergenic	5808	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
21.4086	chr15	86086284	86086783	+	0	NA	intron (NM_007200, intron 4 of 36)	intron (NM_007200, intron 4 of 36)	-76648	NM_001270546	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
0.438316-8	chr1	246362338	246362837	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	218127	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
15.5284	chr3	3814522	3815021	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-26344	NM_001324188	57633	Hs.163244	NM_020873	ENSG00000175928	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
22.1183-2	chr11	88209227	88209726	+	0	NA	Intergenic	Intergenic	-28268	NR_049724	100873989	Hs.616625	NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
3.83-4	chr18	12947229	12947728	+	0	NA	promoter-TSS (NM_001013437)	promoter-TSS (NM_001013437)	-505	NM_001013437	81929	Hs.301048	NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
3.85103-6	chr5	72744312	72744811	+	0	NA	promoter-TSS (NM_004472)	promoter-TSS (NM_004472)	-209	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
1.73925-4	chr1	213155683	213156182	+	0	NA	intron (NM_001136475, intron 6 of 6)	intron (NM_001136475, intron 6 of 6)	32070	NM_001136475	79805	Hs.96885	NM_024749	ENSG00000143494	VASH2	-	vasohibin 2	protein-coding
2.78189-19	chr11	67572476	67572975	+	0	NA	promoter-TSS (NR_024249)	promoter-TSS (NR_024249)	82	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
23.4969	chr1	167050457	167050956	+	0	NA	intron (NM_005814, intron 1 of 6)	intron (NM_005814, intron 1 of 6)	9162	NM_005814	10223	Hs.651244	NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
1.96543-9	chr9	127615305	127615804	+	0	NA	promoter-TSS (NM_001045476)	promoter-TSS (NM_001045476)	-142	NM_001276375	401551	Hs.343383	NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
4.76254-15	chr1	40335703	40336202	+	0	NA	intron (NM_001312691, intron 1 of 9)	SVA_B|Other|Other	13231	NR_132402	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
2.33587-6	chr6	142799069	142799568	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	159655	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
0.105502-10	chr10	90694550	90695049	+	0	NA	TTS (NM_001141945)	TTS (NM_001141945)	2358	NR_125373	100132116	Hs.713690	NR_125373	ENSG00000180139	ACTA2-AS1	ZXF1|uc001kfo.1	ACTA2 antisense RNA 1	ncRNA
1.4752-18	chr11	86443709	86444208	+	0	NA	Intergenic	SVA_D|Other|Other	-58143	NM_001293180	11098	Hs.25338	NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine 23	protein-coding
0.172766-26	chr9	112006632	112007131	+	0	NA	intron (NM_018424, intron 14 of 15)	AluSx|SINE|Alu	76363	NM_019114	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
0.141246-31	chr7	72850431	72850930	+	0	NA	TTS (NM_003508)	TTS (NM_003508)	2571	NM_003508	8326	Hs.647029	NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
14.3771-2	chr1	1056577	1057816	+	0	NA	Intergenic	Intergenic	-5460	NM_017891	54991	Hs.235095	NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
2.13249-10	chr6	161791772	161792271	+	0	NA	intron (NM_013987, intron 9 of 10)	intron (NM_013987, intron 9 of 10)	-96914	NM_020133	56895	Hs.353175	NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
1.70696-16	chr18	49949375	49949874	+	0	NA	intron (NM_005215, intron 1 of 28)	intron (NM_005215, intron 1 of 28)	83082	NM_005215	1630	Hs.162025	NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
6.09065-3	chr6	101008185	101008684	+	0	NA	intron (NM_006828, intron 36 of 41)	intron (NM_006828, intron 36 of 41)	-96883	NM_005068	6492	Hs.520293	NM_005068	ENSG00000112246	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
2.52588-19	chr17	38654541	38655040	+	0	NA	intron (NM_032865, intron 1 of 12)	MIR|SINE|MIR	3064	NM_032865	84951	Hs.438292	NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
4.9485	chr2	85198984	85199483	+	0	NA	intron (NM_020122, intron 1 of 6)	CpG	1002	NM_020122	56888	Hs.654968	NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
5.34617-9	chr7	157562317	157562816	+	0	NA	intron (NM_130843, intron 11 of 21)	intron (NM_130843, intron 11 of 21)	-84711	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
3.20572-6	chr11	126473317	126473816	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-49107	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
0.357404-10	chr3	122786326	122786825	+	0	NA	intron (NM_006810, intron 1 of 16)	CpG	719	NM_006810	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
0.665127-13	chr16	85485379	85485878	+	0	NA	Intergenic	Intergenic	-145697	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
9.62574-22	chr17	71488091	71488590	+	0	NA	intron (NM_001144952, intron 2 of 44)	MLT1H|LTR|ERVL-MaLR	-21482	NR_135635	101928251	Hs.434726	NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
6.16185-15	chr5	88240797	88241296	+	0	NA	intron (NR_136220, intron 3 of 7)	X3_LINE|LINE|RTE-BovB	-41124	NM_001193347	4208	Hs.649965	NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding
6.14394-2	chr5	93227329	93227828	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-150269	NM_153216	134187	Hs.678995	NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
2.49492-7	chr3	151302316	151302815	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-18782	NR_049818	100847036		NR_049818	ENSG00000264330	MIR5186	-	microRNA 5186	ncRNA
1.43271-7	chr5	160974645	160975144	+	0	NA	intron (NM_021911, intron 1 of 10)	CpG	236	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding
1.56767-14	chr2	103314785	103315284	+	0	NA	intron (NM_003048, intron 7 of 11)	MLT1H2|LTR|ERVL-MaLR	38313	NM_032718	84804	Hs.590898	NM_032718	ENSG00000135953	MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
3.22393-2	chr4	64484895	64485394	+	0	NA	Intergenic	Intergenic	790034	NM_001010874	253017	Hs.227752	NM_001010874	ENSG00000205678	TECRL	CPVT3|GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
1.24939-2	chr6	105770335	105770834	+	0	NA	intron (NM_002726, intron 10 of 14)	intron (NM_002726, intron 10 of 14)	80415	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
1.75874-18	chr6	119091445	119091944	+	0	NA	Intergenic	Intergenic	-12177	NR_037662	100287632	Hs.334026	NR_037662		LOC100287632	-	selenoprotein K pseudogene	pseudo
10.4769-3	chr15	48136587	48137086	+	0	NA	intron (NR_120336, intron 2 of 4)	intron (NR_120336, intron 2 of 4)	1597	NR_120336	101928442	Hs.242804	NR_120336	ENSG00000259572	LINC01491	-	long intergenic non-protein coding RNA 1491	ncRNA
1.49967-2	chr1	111161969	111162468	+	0	NA	intron (NM_001204269, intron 1 of 4)	intron (NM_001204269, intron 1 of 4)	11878	NM_001204269	3737	Hs.248139	NM_004974	ENSG00000177301	KCNA2	EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
13.1426	chr4	119487094	119487593	+	0	NA	Intergenic	Intergenic	-25556	NR_109983	729218	Hs.448518	NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
0.0524306-9	chr4	72419296	72419795	+	0	NA	intron (NM_001134742, intron 20 of 24)	intron (NM_001134742, intron 20 of 24)	214775	NM_003759	8671	Hs.5462	NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
4.82804-6	chr6	96604206	96604705	+	0	NA	intron (NM_006581, intron 2 of 2)	MER61D|LTR|ERV1	140610	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
2.1467-3	chr1	237451255	237451754	+	0	NA	intron (NM_001035, intron 2 of 104)	L1PBa1|LINE|L1	-182915	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
1.77178-2	chr7	32243931	32244430	+	0	NA	intron (NM_001322059, intron 2 of 17)	intron (NM_001322059, intron 2 of 17)	94836	NM_001191058	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
2.0621-10	chr20	32672283	32672782	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	27630	NM_001316363	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
4.698-4	chr1	207007027	207007526	+	0	NA	5' UTR (NM_013371, exon 2 of 7)	5' UTR (NM_013371, exon 2 of 7)	5054	NM_013371	29949	Hs.661017	NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
4.36519-4	chr10	99205572	99206071	+	0	NA	promoter-TSS (NM_001318366)	promoter-TSS (NM_001318366)	-47	NM_016046	51013	Hs.632089	NM_016046	ENSG00000171311	EXOSC1	CGI-108|CSL4|Csl4p|SKI4|Ski4p|p13	exosome component 1	protein-coding
0.942041-7	chr17	4503928	4504427	+	0	NA	intron (NM_198501, intron 7 of 7)	intron (NM_198501, intron 7 of 7)	16343	NM_001114974	342527	Hs.441709	NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
4.24812-2	chr6	80816261	80816760	+	0	NA	exon (NM_000056, exon 1 of 11)	exon (NM_000056, exon 1 of 11)	183	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
5.49751-5	chr8	40691343	40691842	+	0	NA	intron (NM_001135731, intron 1 of 5)	intron (NM_001135731, intron 1 of 5)	63751	NM_001135731	79698	Hs.591850	NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
8.29738-8	chr1	100151185	100151684	+	0	NA	intron (NM_017734, intron 3 of 7)	intron (NM_017734, intron 3 of 7)	-3177	NR_037516	100500863		NR_037516	ENSG00000207704	MIR548AA1	-	microRNA 548aa-1	ncRNA
1.81115-16	chr5	529045	529544	+	0	NA	Intergenic	Intergenic	-4745	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
1.35489-17	chr4	103266395	103266894	+	0	NA	promoter-TSS (NM_001135147)	promoter-TSS (NM_001135147)	11	NM_001135146	64116	Hs.288034	NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
1.91789-9	chr1	46907918	46908417	+	0	NA	intron (NR_045483, intron 7 of 8)	MIRb|SINE|MIR	7209	NR_121680	101929651	Hs.638707	NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
3.19664-11	chr2	171551620	171552119	+	0	NA	Intergenic	Intergenic	19208	NR_027433	440925	Hs.668461	NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
4.20216-9	chr9	79792450	79792949	+	0	NA	exon (NM_033305, exon 1 of 72)	exon (NM_033305, exon 1 of 72)	134	NR_026668	100286938	Hs.662256	NR_026668	ENSG00000232998	VPS13A-AS1	-	VPS13A antisense RNA 1	ncRNA
18.3863-8	chr4	139812021	139812520	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	121530	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
8.8941-8	chr6	42928174	42928673	+	0	NA	promoter-TSS (NR_134899)	promoter-TSS (NR_134899)	-69	NM_001318865	27232	Hs.144914	NM_018960	ENSG00000124713	GNMT	HEL-S-182mP	glycine N-methyltransferase	protein-coding
11.9791-6	chr9	130406663	130407162	+	0	NA	intron (NM_001032221, intron 1 of 18)	intron (NM_001032221, intron 1 of 18)	32426	NM_001032221	6812	Hs.288229	NM_003165	ENSG00000136854	STXBP1	MUNC18-1|NSEC1|P67|RBSEC1|UNC18	syntaxin binding protein 1	protein-coding
1.7134-4	chr11	33499690	33500189	+	0	NA	Intergenic	Intergenic	-63938	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
0.990869-9	chr8	124890112	124890611	+	0	NA	intron (NM_001039112, intron 1 of 40)	intron (NM_001039112, intron 1 of 40)	26134	NM_001039112	654463	Hs.632058	NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1 like family member 6	protein-coding
1.77178-4	chr9	125873610	125874109	+	0	NA	promoter-TSS (NR_030331)	promoter-TSS (NR_030331)	63	NR_030331	693185		NR_030331	ENSG00000236901	MIR600	MIRN600|hsa-mir-600	microRNA 600	ncRNA
14.3771-7	chr12	81848553	81849052	+	0	NA	intron (NM_003625, intron 5 of 32)	intron (NM_003625, intron 5 of 32)	57368	NM_001282536	8499	Hs.506216	NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding
5.83359-24	chr14	42632070	42632569	+	0	NA	Intergenic	LTR14B|LTR|ERVK	556260	NR_144388	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
0.0744648-21	chr7	158820184	158820683	+	0	NA	TTS (NM_001308259)	TTS (NM_001308259)	19388	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
0.254883-7	chr17	46801790	46802289	+	0	NA	promoter-TSS (NR_036150)	promoter-TSS (NR_036150)	-202	NR_036150	100422978		NR_036150	ENSG00000263602	MIR3185	-	microRNA 3185	ncRNA
0.0305075-31	chr14	61189798	61190297	+	0	NA	exon (NM_017420, exon 1 of 3)	exon (NM_017420, exon 1 of 3)	805	NM_017420	51804	Hs.97849	NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
3.30683-14	chr16	73104336	73104835	+	0	NA	Intergenic	Intergenic	-12051	NM_001164766	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
0.920515-5	chr2	131100119	131100618	+	0	NA	promoter-TSS (NM_001321118)	promoter-TSS (NM_001321118)	-114	NR_104471	84317	Hs.104203	NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
18.8273	chr1	236678588	236679087	+	0	NA	Intergenic	Zaphod2|DNA|hAT-Tip100	-2677	NM_201545	3964	Hs.4082	NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
0.400052-19	chr19	38494069	38494568	+	0	NA	intron (NM_015073, intron 1 of 21)	intron (NM_015073, intron 1 of 21)	96457	NM_015073	23094	Hs.655502	NM_015073	ENSG00000105738	SIPA1L3	CTRCT45|SPAL3|SPAR3	signal induced proliferation associated 1 like 3	protein-coding
11.2901-2	chr5	14262766	14263558	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	119351	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
9.24453-4	chr14	76922472	76922971	+	0	NA	intron (NM_004452, intron 4 of 10)	intron (NM_004452, intron 4 of 10)	85031	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
3.56547-2	chr1	142705657	142706156	+	0	NA	intron (NR_046228, intron 2 of 4)	MER61C|LTR|ERV1	7699	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
1.69411-8	chr7	110997711	110998210	+	0	NA	intron (NM_001244606, intron 4 of 6)	intron (NM_001244606, intron 4 of 6)	204387	NM_032549	83943	Hs.655722	NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding
7.28158-10	chr1	234882326	234882825	+	0	NA	Intergenic	Intergenic	22786	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
0.979971-3	chr6	138019778	138020277	+	0	NA	Intergenic	MIRb|SINE|MIR	33244	NR_125867	102723649	Hs.129235	NR_125867		LOC102723649	-	uncharacterized LOC102723649	ncRNA
6.14394	chr4	119199571	119200384	+	0	NA	promoter-TSS (NR_003584)	promoter-TSS (NR_003584)	60	NR_034010	100093630	Hs.535762	NR_003584	ENSG00000269893	SNHG8	LINC00060|NCRNA00060	small nucleolar RNA host gene 8	ncRNA
3.53596-18	chr22	22221818	22222317	+	0	NA	promoter-TSS (NM_138957)	promoter-TSS (NM_138957)	-97	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
1.91789-11	chr9	107827153	107827652	+	0	NA	Intergenic	MIR|SINE|MIR	-136875	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
0.660068-6	chr9	139844306	139844805	+	0	NA	Intergenic	CpG	-2213	NM_178536	286256	Hs.440519	NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
13.0103-9	chr7	141029925	141030424	+	0	NA	intron (NM_001195278, intron 2 of 3)	L1PA10|LINE|L1	-220904	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
1.36677-3	chr11	65341442	65341941	+	0	NA	TTS (NM_152832)	TTS (NM_152832)	-1818	NM_001099409	254102	Hs.502867	NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
1.26098-25	chr3	170442463	170442962	+	0	NA	intron (NR_135556, intron 3 of 5)	MIRb|SINE|MIR	-138849	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding
10.3858	chr9	81879233	81879732	+	0	NA	Intergenic	Intergenic	-118901	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
1.54902-10	chrX	148738076	148738575	+	0	NA	Intergenic	Intergenic	-24757	NM_032508	84548	Hs.522172	NM_032508	ENSG00000269556	TMEM185A	CXorf13|FAM11A|FRAXF|ee3	transmembrane protein 185A	protein-coding
1.01824-6	chr19	48246683	48247182	+	0	NA	TTS (NM_014601)	TTS (NM_014601)	-1861	NM_015710	29997	Hs.421907	NM_015710	ENSG00000105373	GLTSCR2	PICT-1|PICT1	glioma tumor suppressor candidate region gene 2	protein-coding
1.53045-14	chr4	128703860	128704359	+	0	NA	promoter-TSS (NM_001317382)	promoter-TSS (NM_001317382)	-569	NM_001317382	22824	Hs.135554	NM_014278	ENSG00000164070	HSPA4L	APG-1|HSPH3|Osp94	heat shock protein family A (Hsp70) member 4 like	protein-coding
3.79864-4	chr8	21923925	21924424	+	0	NA	5' UTR (NM_001323381, exon 1 of 15)	5' UTR (NM_001323381, exon 1 of 15)	165	NM_001323381	2039	Hs.106124	NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
14.1005-3	chrX	108914828	108915327	+	0	NA	intron (NM_001318510, intron 9 of 15)	SVA_B|Other|Other	-46680	NM_012282	23630	Hs.522753	NM_012282	ENSG00000176076	KCNE5	KCNE1L	potassium voltage-gated channel subfamily E regulatory subunit 5	protein-coding
29.7062-2	chr14	106319219	106319718	+	0	NA	Intergenic	Intergenic	4876	NR_039730	100616135		NR_039730	ENSG00000264024	MIR4507	-	microRNA 4507	ncRNA
24.4733-2	chr9	1960311	1960810	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-54659	NM_001289397	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
2.44888-8	chr5	43416057	43416556	+	0	NA	Intergenic	Intergenic	-3813	NM_148672	56477	Hs.656904	NM_019846	ENSG00000151882	CCL28	CCK1|MEC|SCYA28	C-C motif chemokine ligand 28	protein-coding
1.36677-19	chr5	149541079	149541578	+	0	NA	Intergenic	Intergenic	-5016	NM_001804	1044	Hs.1545	NM_001804	ENSG00000113722	CDX1	-	caudal type homeobox 1	protein-coding
12.2548	chr6	10099178	10099677	+	0	NA	Intergenic	Intergenic	-313124	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
0.0480371-5	chr1	68027292	68027791	+	0	NA	Intergenic	Intergenic	-123319	NM_001199741	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
5.65431	chr6	26473982	26474481	+	0	NA	intron (NR_038992, intron 3 of 3)	intron (NR_038992, intron 3 of 3)	8506	NR_038992	285819	Hs.575357	NR_038992		LOC285819	-	uncharacterized LOC285819	ncRNA
20.348	chr2	187284944	187285443	+	0	NA	Intergenic	L1MB5|LINE|L1	-65692	NM_018471	55854	Hs.741180	NM_018471	ENSG00000065548	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
4.27128-8	chr4	115519363	115519862	+	0	NA	promoter-TSS (NM_001322114)	promoter-TSS (NM_001322114)	54	NM_001322112	7368	Hs.144197	NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
1.49354-17	chr5	14144289	14144788	+	0	NA	intron (NM_007118, intron 1 of 56)	CpG	727	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
5.83359-9	chr3	185815919	185816418	+	0	NA	intron (NM_004454, intron 5 of 12)	intron (NM_004454, intron 5 of 12)	10733	NM_004454	2119	Hs.43697	NM_004454	ENSG00000244405	ETV5	ERM	ETS variant 5	protein-coding
0.447935-9	chr5	94982245	94983125	+	0	NA	5' UTR (NM_001131065, exon 1 of 6)	5' UTR (NM_001131065, exon 1 of 6)	102	NM_001131065	317671	Hs.399758	NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
3.55561-4	chr12	94929189	94929688	+	0	NA	Intergenic	Intergenic	-26127	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	ncRNA
4.42493-16	chr1	68150570	68151069	+	0	NA	promoter-TSS (NM_001924)	promoter-TSS (NM_001924)	-41	NM_001199741	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
9.95679-14	chr13	27542447	27542946	+	0	NA	Intergenic	Intergenic	-156974	NR_046547	100874070	Hs.524923	NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
0.195421	chr5	171961055	171961554	+	0	NA	Intergenic	L2b|LINE|L2	-79777	NM_001017995	285590	Hs.285666	NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
16.8613-3	chr9	72260381	72260880	+	0	NA	intron (NM_001163, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	26645	NM_001163	320	Hs.171939	NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
5.65431-3	chr12	32832374	32832873	+	0	NA	intron (NM_001330380, intron 1 of 18)	CpG	489	NM_001330380	10059	Hs.556296	NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV	dynamin 1 like	protein-coding
13.279-14	chr11	106157607	106158106	+	0	NA	Intergenic	Intergenic	35722	NR_120551	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
1.25518-7	chr19	35704728	35705227	+	0	NA	Intergenic	Intergenic	14651	NM_152481	148109	Hs.128069	NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
16.1798-8	chr1	53782791	53783290	+	0	NA	intron (NM_001018054, intron 2 of 17)	intron (NM_001018054, intron 2 of 17)	10781	NM_033300	7804	Hs.280387	NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
0.540393-12	chr7	94139231	94139730	+	0	NA	exon (NM_022900, exon 1 of 18)	exon (NM_022900, exon 1 of 18)	310	NM_022900	64921	Hs.260041	NM_022900	ENSG00000127995	CASD1	C7orf12|NBLA04196	CAS1 domain containing 1	protein-coding
0.609802-5	chr17	37894291	37894790	+	0	NA	promoter-TSS (NM_001242442)	promoter-TSS (NM_001242442)	-36	NM_001030002	2886	Hs.86859	NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
3.75718-12	chr13	53392463	53392962	+	0	NA	Intergenic	SVA_B|Other|Other	8527	NR_031582	100313778		NR_031582	ENSG00000211579	MIR759	hsa-mir-759	microRNA 759	ncRNA
0.447935-16	chr13	111293383	111293882	+	0	NA	TTS (NM_024537)	TTS (NM_024537)	25701	NM_001242881	55739	Hs.408324	NM_018210	ENSG00000213995	NAXD	CARKD|LP3298	NAD(P)HX dehydratase	protein-coding
10.5453-3	chr4	30838673	30839172	+	0	NA	intron (NM_032457, intron 1 of 2)	intron (NM_032457, intron 1 of 2)	116885	NM_001173523	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
28.1816-6	chrX	117200767	117201266	+	0	NA	intron (NM_001168301, intron 1 of 7)	Tigger3b|DNA|TcMar-Tigger	49812	NM_001168303	90293	Hs.348262	NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
6.0206-4	chr13	36966795	36967294	+	0	NA	Intergenic	L1PA15|LINE|L1	-22727	NM_001142294	23111	Hs.440414	NM_015087	ENSG00000133104	SPG20	SPARTIN|TAHCCP1	spastic paraplegia 20 (Troyer syndrome)	protein-coding
13.3442-4	chr6	149635572	149636071	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-3242	NM_001292034	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
0.0877392-35	chr11	60709792	60710291	+	0	NA	intron (NM_016582, intron 3 of 7)	MamRep38|DNA|hAT	9216	NM_016582	51296	Hs.237856	NM_016582	ENSG00000110446	SLC15A3	OCTP|PHT2|PTR3	solute carrier family 15 member 3	protein-coding
3.19664-9	chr9	140134817	140135316	+	0	NA	promoter-TSS (NM_006088)	promoter-TSS (NM_006088)	-645	NM_006088	10383	Hs.433615	NM_006088	ENSG00000188229	TUBB4B	Beta2|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
0.565055-10	chr9	124884929	124885428	+	0	NA	Intergenic	Intergenic	-2732	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
3.44862-10	chr17	18280634	18281133	+	0	NA	promoter-TSS (NM_001145127)	promoter-TSS (NM_001145127)	-196	NM_001145127	645027	Hs.462400	NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
1.01824-3	chr12	7315214	7315713	+	0	NA	Intergenic	Intergenic	-26296	NM_001131026	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
1.58015	chr14	75943243	75943742	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	44655	NM_001135049	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
16.073-4	chr13	80825472	80825971	+	0	NA	Intergenic	Intergenic	88073	NM_001318538	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
0.136762-19	chr15	35357076	35357575	+	0	NA	Intergenic	Intergenic	-76828	NM_014106	54989	Hs.744990	NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
0.181814	chr16	75572840	75573339	+	0	NA	non-coding (NR_074083, exon 7 of 7)	non-coding (NR_074083, exon 7 of 7)	-4021	NM_024533	23563	Hs.745424	NM_012126	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate sulfotransferase 5	protein-coding
13.4008-2	chr10	43892561	43893060	+	0	NA	promoter-TSS (NM_001098208)	promoter-TSS (NM_001098208)	-16	NM_001098207	3185	Hs.808	NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
9.0309	chrX	92547521	92548020	+	0	NA	Intergenic	L1M1|LINE|L1	380912	NM_004538	4675	Hs.21365	NM_004538	ENSG00000186310	NAP1L3	MB20|NPL3	nucleosome assembly protein 1 like 3	protein-coding
6.30784-11	chr4	140796863	140797362	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	210190	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
12.815	chr5	38803258	38803757	+	0	NA	intron (NR_109951, intron 1 of 3)	MER47B|DNA|TcMar-Tigger	42424	NR_109951	101929768	Hs.546623	NR_109951		OSMR-AS1	CTD-2127H9.1	OSMR antisense RNA 1 (head to head)	ncRNA
2.24026-7	chr6	29617493	29617992	+	0	NA	Intergenic	Intergenic	-7016	NM_001008228	4340	Hs.141308	NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
0.172766-45	chr6	111886983	111887482	+	0	NA	intron (NM_147200, intron 8 of 9)	MIRb|SINE|MIR	1331	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
5.62249-13	chr12	119505882	119506381	+	0	NA	intron (NM_194286, intron 1 of 12)	intron (NM_194286, intron 1 of 12)	86831	NM_194286	84530	Hs.744964	NM_194286	ENSG00000139767	SRRM4	KIAA1853|MU-MB-2.76|nSR100	serine/arginine repetitive matrix 4	protein-coding
0.0217692-5	chr8	133132484	133132983	+	0	NA	TTS (NM_004519)	TTS (NM_004519)	-15221	NM_001145095	10086	Hs.285026	NM_005712	ENSG00000132297	HHLA1	PLA2L	HERV-H LTR-associating 1	protein-coding
8.26814-8	chr2	106418971	106419470	+	0	NA	intron (NM_001004722, intron 1 of 3)	MSTB1|LTR|ERVL-MaLR	-48984	NM_001004720	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
0.310503-38	chr15	81071307	81071806	+	0	NA	promoter-TSS (NM_001293298)	promoter-TSS (NM_001293298)	-128	NM_018689	57214	Hs.459088	NM_018689	ENSG00000103888	CEMIP	CCSP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronan binding protein	protein-coding
1.81115-19	chr20	47537966	47538838	+	0	NA	5' UTR (NM_006420, exon 1 of 39)	5' UTR (NM_006420, exon 1 of 39)	127	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
1.77178-8	chr12	109531086	109531585	+	0	NA	promoter-TSS (NM_001205179)	promoter-TSS (NM_001205179)	-42	NM_001205179	121642	Hs.374458	NM_001001655	ENSG00000189046	ALKBH2	ABH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein-coding
3.28827-14	chr5	31237182	31237681	+	0	NA	intron (NM_004932, intron 1 of 11)	intron (NM_004932, intron 1 of 11)	43669	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
17.0553-4	chr2	9519045	9519544	+	0	NA	intron (NM_001135191, intron 19 of 26)	intron (NM_001135191, intron 19 of 26)	43495	NR_134951	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
1.15771-2	chr18	68360325	68360824	+	0	NA	Intergenic	Intergenic	-42481	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding
0.0744648-10	chr11	86511195	86511694	+	0	NA	non-coding (NR_120592, exon 1 of 3)	non-coding (NR_120592, exon 1 of 3)	162	NM_001293179	11098	Hs.25338	NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine 23	protein-coding
0.296531-90	chr2	33171310	33171809	+	0	NA	promoter-TSS (NM_206943)	promoter-TSS (NM_206943)	-810	NM_206943	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
1.25518-10	chr11	8311546	8312045	+	0	NA	Intergenic	Intergenic	-21613	NM_001270428	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
1.80456-9	chr1	185226525	185227024	+	0	NA	intron (NM_001105518, intron 16 of 18)	L1PA2|LINE|L1	59687	NM_006469	10625	Hs.497183	NM_006469	ENSG00000116679	IVNS1ABP	FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
3.50665-11	chr8	48873137	48873636	+	0	NA	promoter-TSS (NM_006904)	promoter-TSS (NM_006904)	623	NM_005914	4173	Hs.460184	NM_005914	ENSG00000104738	MCM4	CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21	minichromosome maintenance complex component 4	protein-coding
0.123337-14	chr6	150389380	150389879	+	0	NA	intron (NM_024518, intron 1 of 4)	intron (NM_024518, intron 1 of 4)	654	NM_024518	79465	Hs.15422	NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
0.931265-3	chr6	109703265	109704445	+	0	NA	promoter-TSS (NM_001346500)	promoter-TSS (NM_001346500)	160	NM_001142403	8763	Hs.520313	NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
0.132283-28	chr4	103264959	103265458	+	0	NA	intron (NM_001135146, intron 2 of 8)	intron (NM_001135146, intron 2 of 8)	1140	NM_022154	64116	Hs.288034	NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
1.19186-36	chrX	47342216	47342715	+	0	NA	promoter-TSS (NM_001324143)	promoter-TSS (NM_001324143)	-120	NM_153380	7592	Hs.496074	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
1.19186-2	chr14	23821557	23822056	+	0	NA	promoter-TSS (NM_001289050)	promoter-TSS (NM_001289050)	-146	NM_001289050	51310	Hs.373498	NM_016609	ENSG00000092096	SLC22A17	24p3R|BOCT|BOIT|NGALR|NGALR2|NGALR3|hBOIT	solute carrier family 22 member 17	protein-coding
0.76238-7	chr6	167639454	167639953	+	0	NA	Intergenic	Intergenic	55622	NM_001145121	401285	Hs.691976	NM_001013683	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
20.5799	chr4	170749835	170750334	+	0	NA	Intergenic	SVA_B|Other|Other	-70991	NM_017867	54969	Hs.406756	NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
17.8781-11	chr18	75496841	75497340	+	0	NA	Intergenic	Intergenic	208593	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
9.43095-2	chr1	154763674	154764173	+	0	NA	intron (NM_002249, intron 2 of 7)	intron (NM_002249, intron 2 of 7)	68415	NM_170782	3782	Hs.490765	NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
6.32644-12	chr7	1914003	1914502	+	0	NA	intron (NM_001013836, intron 18 of 18)	intron (NM_001013836, intron 18 of 18)	-30363	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
18.7615-4	chr2	178505975	178506474	+	0	NA	intron (NM_001077358, intron 18 of 18)	intron (NM_001077358, intron 18 of 18)	-22530	NM_152275	92104	Hs.128384	NM_152275	ENSG00000197557	TTC30A	IFT70A	tetratricopeptide repeat domain 30A	protein-coding
15.1004-2	chr17	62842206	62842705	+	0	NA	Intergenic	Intergenic	-9153	NR_024386	440456	Hs.646585	NR_024386		PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
1.85087-15	chr6	39906720	39907219	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-4679	NR_033233	4337	Hs.357128	NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCODA	molybdenum cofactor synthesis 1	protein-coding
0.172766-13	chr6	135503378	135503877	+	0	NA	intron (NR_134962, intron 1 of 14)	CpG	1174	NM_001161659	4602	Hs.606320	NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
2.96709-11	chr12	105501240	105501739	+	0	NA	promoter-TSS (NM_015275)	promoter-TSS (NM_015275)	-3	NM_015275	23325	Hs.12144	NM_015275	ENSG00000136051	WASHC4	KIAA1033|MRT43|SWIP	WASH complex subunit 4	protein-coding
19.2812-3	chr14	44873077	44873576	+	0	NA	Intergenic	Intergenic	103173	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
2.18963-17	chr3	150456055	150456554	+	0	NA	intron (NR_121657, intron 1 of 2)	intron (NR_121657, intron 1 of 2)	468	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
3.53596-4	chr10	78984960	78985459	+	0	NA	intron (NM_001322838, intron 3 of 29)	intron (NM_001322838, intron 3 of 29)	84620	NR_120654	101929310	Hs.666457	NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
17.5449	chr8	9637591	9638090	+	0	NA	3' UTR (NM_003747, exon 27 of 27)	3' UTR (NM_003747, exon 27 of 27)	38658	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
1.02373-10	chr8	33538916	33539415	+	0	NA	Intergenic	Intergenic	-81541	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
5.37602-11	chr15	65407307	65407806	+	0	NA	Intergenic	Intergenic	-8859	NM_001163692	390595	Hs.659256	NM_001163692	ENSG00000246922	UBAP1L	UBAP-1L	ubiquitin associated protein 1 like	protein-coding
6.88246-8	chr4	2359149	2359648	+	0	NA	intron (NM_001172657, intron 1 of 6)	intron (NM_001172657, intron 1 of 6)	7206	NM_001172659	57732	Hs.292056	NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2	zinc finger FYVE-type containing 28	protein-coding
3.04518-4	chr18	60822627	60823126	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	163737	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
7.32828-8	chr1	208565715	208566214	+	0	NA	Intergenic	Intergenic	-148299	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
0.154727	chrX	75369413	75369912	+	0	NA	Intergenic	CpG	-23102	NM_001300888	51260	Hs.370100	NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
6.51695-6	chr15	53489562	53490061	+	0	NA	Intergenic	Intergenic	343238	NR_102336	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
0.996329-8	chrX	19400815	19401314	+	0	NA	intron (NM_001001671, intron 18 of 28)	LTR33A|LTR|ERVL	39053	NM_001173455	5160	Hs.530331	NM_000284	ENSG00000131828	PDHA1	PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase (lipoamide) alpha 1	protein-coding
7.54487-4	chr8	40851052	40851551	+	0	NA	Intergenic	Intergenic	-95958	NM_024645	79698	Hs.591850	NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
32.5885-4	chr2	140562931	140563430	+	0	NA	Intergenic	Intergenic	781074	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA
0.670192-3	chr9	72378465	72378964	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-3838	NM_001099666	375743	Hs.744192	NM_001099666	ENSG00000188647	PTAR1	-	protein prenyltransferase alpha subunit repeat containing 1	protein-coding
2.20404-8	chr7	953667	954166	+	0	NA	intron (NM_001284308, intron 4 of 10)	intron (NM_001284308, intron 4 of 10)	6610	NM_001284311	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
3.96856-7	chr9	128340229	128340728	+	0	NA	intron (NM_001006617, intron 5 of 11)	SVA_D|Other|Other	129035	NM_001006621	79109	Hs.495138	NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
0.0305075-25	chr19	36000170	36000669	+	0	NA	intron (NM_001126056, intron 6 of 17)	intron (NM_001126056, intron 6 of 17)	972	NM_001126059	93099	Hs.417795	NM_033317	ENSG00000161249	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
3.39135-13	chr3	127263056	127263555	+	0	NA	Intergenic	Intergenic	-6682	NR_125397	101927149	Hs.407798	NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
0.296531-103	chr4_gl000193_random	83404	83903	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	4722	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
1.82435-15	chrX	118613720	118614219	+	0	NA	Intergenic	L2a|LINE|L2	-10886	NR_028443	100303728	Hs.714405	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
0.996329-32	chr20	4152772	4153271	+	0	NA	intron (NM_175842, intron 1 of 8)	CpG	-20716	NR_033917	728228	Hs.636379	NR_033917	ENSG00000230176	LINC01433	-	long intergenic non-protein coding RNA 1433	ncRNA
6.77781-6	chr14	65879070	65879569	+	0	NA	promoter-TSS (NR_024334)	promoter-TSS (NR_024334)	16	NR_024334	645431	Hs.713717	NR_024334		FUT8-AS1	-	FUT8 antisense RNA 1	ncRNA
1.59894-2	chr16	2073015	2073514	+	0	NA	Intergenic	Intergenic	-3605	NM_004785	9351	Hs.440896	NM_004785	ENSG00000065054	SLC9A3R2	E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1	SLC9A3 regulator 2	protein-coding
4.25969-15	chr12	122710660	122711159	+	0	NA	promoter-TSS (NR_103497)	promoter-TSS (NR_103497)	-80	NR_103497	101593348	Hs.99308	NR_103497		LOC101593348	-	uncharacterized LOC101593348	ncRNA
0.273344-2	chr3	128722605	128723104	+	0	NA	exon (NM_024768, exon 2 of 8)	exon (NM_024768, exon 2 of 8)	2382	NM_024768	79825	Hs.134807	NM_024768	ENSG00000114654	EFCC1	C3orf73|CCDC48	EF-hand and coiled-coil domain containing 1	protein-coding
0.109954-27	chr12	58176242	58176741	+	0	NA	promoter-TSS (NM_001172695)	promoter-TSS (NM_001172695)	-37	NM_001172695	10102	Hs.632704	NM_005726	ENSG00000123297	TSFM	EFTS|EFTSMT	Ts translation elongation factor, mitochondrial	protein-coding
10.013-2	chr13	95131862	95132361	+	0	NA	promoter-TSS (NM_001922)	promoter-TSS (NM_001922)	-175	NM_001922	1638	Hs.301865	NM_001922	ENSG00000080166	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
4.40093-4	chr8	90711901	90712400	+	0	NA	Intergenic	SVA_D|Other|Other	57789	NR_125822	101929709	Hs.651324	NR_125822	ENSG00000251136	LOC101929709	-	uncharacterized LOC101929709	ncRNA
8.69666-7	chr1	108815322	108815821	+	0	NA	Intergenic	CpG	-28868	NM_001143989	148545	Hs.511849	NM_152488	ENSG00000196427	NBPF4	-	neuroblastoma breakpoint family member 4	protein-coding
3.95774-10	chr3	142949591	142950090	+	0	NA	Intergenic	Intergenic	111222	NM_004267	9435	Hs.8786	NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
18.2974	chr5	66106800	66107299	+	0	NA	intron (NM_198828, intron 3 of 5)	intron (NM_198828, intron 3 of 5)	-17555	NM_015183	375449	Hs.595458	NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
0.301184-28	chr12	11639457	11639956	+	0	NA	Intergenic	Intergenic	-61258	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
6.32644-9	chr1	28908155	28908654	+	0	NA	promoter-TSS (NR_024127)	promoter-TSS (NR_024127)	-38	NR_024127	85028	Hs.632377	NM_053040	ENSG00000197989	SNHG12	ASLNC04080|C1orf79|LINC00100|NCRNA00100	small nucleolar RNA host gene 12	ncRNA
3.03644-9	chr7	150102167	150102666	+	0	NA	promoter-TSS (NR_027237)	promoter-TSS (NR_027237)	-424	NR_027237	728743	Hs.650365	NM_001080852		LOC728743	-	zinc finger protein pseudogene	pseudo
3.30683-19	chr12	66695507	66696006	+	0	NA	promoter-TSS (NR_135080)	promoter-TSS (NR_135080)	-569	NR_135081	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
2.46417-5	chr7	22528414	22528913	+	0	NA	intron (NM_001164460, intron 4 of 4)	intron (NM_001164460, intron 4 of 4)	11238	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
2.24026-11	chr14	68085246	68085745	+	0	NA	Intergenic	Intergenic	-1084	NM_001172	384	Hs.226007	NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
9.20819-8	chr5	64368608	64369107	+	0	NA	Intergenic	Intergenic	304112	NM_001297644	10283	Hs.371372	NM_005869	ENSG00000153015	CWC27	NY-CO-10|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated protein homolog	protein-coding
2.54925-15	chr5	173172083	173172582	+	0	NA	intron (NR_108027, intron 1 of 2)	intron (NR_108027, intron 1 of 2)	880	NR_108027	101928136	Hs.449267	NR_108027	ENSG00000253686	LINC01484	-	long intergenic non-protein coding RNA 1484	ncRNA
0.195421-13	chr7	372559	373058	+	0	NA	Intergenic	CpG	42672	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	ncRNA
1.58641-6	chr22	43011282	43011781	+	0	NA	promoter-TSS (NM_001278657)	promoter-TSS (NM_001278657)	280	NR_029422	267010	Hs.574857	NR_029422	ENSG00000276027	RNU12	RNU12-1|RNU12L|RNU12P|dJ222E13.7	RNA, U12 small nuclear	snRNA
0.428718-35	chr21	40177506	40178005	+	0	NA	promoter-TSS (NM_005239)	promoter-TSS (NM_005239)	0	NM_005239	2114	Hs.644231	NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding
0.574959-8	chr12	3629789	3630288	+	0	NA	intron (NM_019854, intron 1 of 9)	HERVP71A-int|LTR|ERV1	-28053	NR_126055	100129223	Hs.586788	NR_126055		THCAT155	-	thyroid cancer-associated transcript 155	ncRNA
0.996329-23	chr17	19912815	19913314	+	0	NA	intron (NM_001243439, intron 1 of 14)	CpG	415	NM_001243439	92521	Hs.431045	NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
4.36519-25	chr3	159557722	159558221	+	0	NA	5' UTR (NM_001197109, exon 1 of 7)	5' UTR (NM_001197109, exon 1 of 7)	321	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
0.376307-30	chr10	16858943	16859442	+	0	NA	intron (NM_012425, intron 1 of 8)	CpG	261	NM_012425	6251	Hs.524161	NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
7.85156	chr9	35657623	35658122	+	0	NA	promoter-TSS (NM_001195200)	promoter-TSS (NM_001195200)	143	NR_003051	6023	Hs.587502	NR_003051	ENSG00000269900	RMRP	CHH|NME1|RMRPR|RRP2	RNA component of mitochondrial RNA processing endoribonuclease	ncRNA
1.60522-5	chr8	145752048	145752547	+	0	NA	3' UTR (NM_001001795, exon 3 of 3)	3' UTR (NM_001001795, exon 3 of 3)	119	NM_001024678	441381	Hs.740859	NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
10.2411-8	chr6	99796109	99796608	+	0	NA	intron (NM_001346530, intron 1 of 5)	intron (NM_001346530, intron 1 of 5)	1173	NM_032511	84553	Hs.573245	NM_032511	ENSG00000146267	FAXC	C6orf168|dJ273F20	failed axon connections homolog	protein-coding
12.4336	chr6	102280238	102280737	+	0	NA	intron (NM_001166247, intron 9 of 16)	intron (NM_001166247, intron 9 of 16)	433626	NM_021956	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
33.7779	chr3	156666259	156666758	+	0	NA	intron (NM_001004316, intron 6 of 12)	L1PREC2|LINE|L1	122360	NM_001193283	389170	Hs.478048	NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
11.7522-4	chr1	240893103	240893602	+	0	NA	intron (NR_128706, intron 3 of 3)	intron (NR_128706, intron 3 of 3)	-117890	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
1.75874-12	chr2	191884853	191885352	+	0	NA	Intergenic	CpG	-1150	NR_136318	105373805	Hs.570280	NR_136318	ENSG00000231858	LOC105373805	-	uncharacterized LOC105373805	ncRNA
1.53663-33	chr2	31556331	31556830	+	0	NA	TTS (NM_000379)	TTS (NM_000379)	81031	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
3.08035	chr14	100437489	100437988	+	0	NA	promoter-TSS (NM_001330221)	promoter-TSS (NM_001330221)	-74	NM_001330221	51466	Hs.125867	NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
6.59556-3	chr12	22809727	22810226	+	0	NA	intron (NM_018638, intron 2 of 7)	Tigger11a|DNA|TcMar-Tigger	31900	NM_001039481	55500	Hs.29464	NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
2.35824-10	chr2	74618713	74619212	+	0	NA	non-coding (NR_033935, exon 1 of 27)	non-coding (NR_033935, exon 1 of 27)	252	NR_033935	1639	Hs.516111	NM_004082	ENSG00000204843	DCTN1	DAP-150|DP-150|P135	dynactin subunit 1	protein-coding
2.32844-7	chr17	72349048	72349547	+	0	NA	intron (NM_153209, intron 15 of 19)	intron (NM_153209, intron 15 of 19)	8661	NM_001080466	388419	Hs.211870	NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
2.52588-2	chr19	52872650	52873149	+	0	NA	promoter-TSS (NM_001145434)	promoter-TSS (NM_001145434)	-271	NM_001145434	400713	Hs.502314	NM_001145434	ENSG00000221923	ZNF880	-	zinc finger protein 880	protein-coding
0.163737-14	chr9	139695451	139695950	+	0	NA	intron (NM_001039374, intron 5 of 13)	intron (NM_001039374, intron 5 of 13)	4910	NM_001039374	84960	Hs.728796	NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
1.39662-10	chr8	70745516	70746413	+	0	NA	promoter-TSS (NM_001146008)	promoter-TSS (NM_001146008)	-339	NM_001146008	81796	Hs.152460	NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
1.37272	chr4	129003931	129004430	+	0	NA	intron (NM_018078, intron 5 of 19)	SVA_D|Other|Other	21759	NM_032239	55132	Hs.657067	NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein domain family member 1B	protein-coding
13.4199-6	chr15	66232644	66233143	+	0	NA	intron (NM_032445, intron 10 of 22)	intron (NM_032445, intron 10 of 22)	71096	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
1.40261	chrX	149681738	149682237	+	0	NA	3' UTR (NM_001177466, exon 6 of 6)	3' UTR (NM_001177466, exon 6 of 6)	-55060	NM_000252	4534	Hs.655056	NM_000252	ENSG00000171100	MTM1	CNM|MTMX|XLMTM	myotubularin 1	protein-coding
0.51587-19	chr1	70032949	70033448	+	0	NA	5' UTR (NM_001330635, exon 1 of 27)	5' UTR (NM_001330635, exon 1 of 27)	330	NM_001330635	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
18.3268-9	chr20	48889169	48889668	+	0	NA	intron (NM_001278655, intron 1 of 3)	intron (NM_001278655, intron 1 of 3)	5395	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
2.83162-6	chr9	110252016	110252515	+	0	NA	promoter-TSS (NM_001314052)	promoter-TSS (NM_001314052)	-264	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
2.89883-13	chr16	15871633	15872132	+	0	NA	intron (NM_022844, intron 7 of 41)	intron (NM_022844, intron 7 of 41)	79005	NM_001040114	4629	Hs.460109	NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC	myosin heavy chain 11	protein-coding
0.181814-22	chr1	232654909	232655756	+	0	NA	Intergenic	Intergenic	-3978	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding
1.31944-3	chr17	73149770	73150269	+	0	NA	promoter-TSS (NM_001288610)	promoter-TSS (NM_001288610)	319	NM_001288609	51155	Hs.532803	NM_016185	ENSG00000189159	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding
4.4855-14	chr9	23850944	23851443	+	0	NA	Intergenic	CpG	-25130	NM_004432	1993	Hs.166109	NM_004432	ENSG00000107105	ELAVL2	HEL-N1|HELN1|HUB	ELAV like RNA binding protein 2	protein-coding
5.14279-9	chr7	105161678	105162177	+	0	NA	intron (NM_019042, intron 1 of 15)	intron (NM_019042, intron 1 of 15)	778	NM_001318164	54517	Hs.520619	NM_019042	ENSG00000091127	PUS7	-	pseudouridylate synthase 7 (putative)	protein-coding
4.24812-7	chr19	55652528	55653027	+	0	NA	intron (NM_001126132, intron 7 of 13)	intron (NM_001126132, intron 7 of 13)	7945	NM_003283	7138	Hs.631558	NM_003283	ENSG00000105048	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T1, slow skeletal type	protein-coding
4.00117-2	chr19	11146369	11146868	+	0	NA	intron (NM_001128848, intron 27 of 32)	intron (NM_001128848, intron 27 of 32)	51790	NM_001128847	6597	Hs.327527	NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
2.52588-22	chr12	113683567	113684066	+	0	NA	intron (NM_001301214, intron 1 of 26)	intron (NM_001301214, intron 1 of 26)	1750	NM_001301214	53373	Hs.524763	NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
17.1444	chr16	54536886	54537385	+	0	NA	Intergenic	Intergenic	-132524	NR_134923	100996345	Hs.112680	NR_134922	ENSG00000261803	LINC02140	-	long intergenic non-protein coding RNA 2140	ncRNA
2.74088-2	chr16	87465488	87465987	+	0	NA	intron (NM_015144, intron 3 of 12)	intron (NM_015144, intron 3 of 12)	39936	NM_022818	81631	Hs.356061	NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
8.96196-10	chr20	3454514	3455013	+	0	NA	intron (NM_139321, intron 1 of 28)	L2b|LINE|L2	3098	NM_139321	8455	Hs.276252	NM_012070	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
0.141246-7	chr11	20931452	20931951	+	0	NA	intron (NM_201551, intron 5 of 18)	MLT1H|LTR|ERVL-MaLR	240604	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
8.41638-7	chr2	11890501	11891000	+	0	NA	intron (NM_145693, intron 1 of 19)	MIR|SINE|MIR	4028	NM_145693	23175	Hs.467740	NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
5.10042-6	chr1	236221469	236221968	+	0	NA	intron (NM_002508, intron 1 of 19)	intron (NM_002508, intron 1 of 19)	6763	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
1.93142-9	chr9	96792738	96793237	+	0	NA	promoter-TSS (NM_177995)	promoter-TSS (NM_177995)	-89	NM_177995	138639	Hs.437943	NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
4.19075-15	chr16	85627111	85627610	+	0	NA	Intergenic	Intergenic	-17669	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
1.49354-12	chr4	38320358	38320857	+	0	NA	Intergenic	Intergenic	199032	NM_001253915	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
1.64944-8	chr12	50101088	50101587	+	0	NA	promoter-TSS (NM_198900)	promoter-TSS (NM_198900)	-140	NM_198900	91010	Hs.179838	NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
4.41291-2	chr14	22843660	22844159	+	0	NA	Intergenic	Intergenic	214234	NM_001344	1603	Hs.82890	NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
0.181814-25	chr21	35574088	35574587	+	0	NA	Intergenic	CpG	21359	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
13.279-2	chr3	151778474	151778973	+	0	NA	Intergenic	Intergenic	-132760	NR_110202	101928142	Hs.680207	NR_110202		AADACL2-AS1	-	AADACL2 antisense RNA 1	ncRNA
0.670192-12	chr3	13823429	13823928	+	0	NA	Intergenic	Intergenic	97940	NM_004625	7476	Hs.72290	NM_004625	ENSG00000154764	WNT7A	-	Wnt family member 7A	protein-coding
5.21434-8	chr17_gl000205_random	16989	17488	+	0	NA	Intergenic	Intergenic	-99385	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
0.127808-28	chr15	92396273	92396772	+	0	NA	promoter-TSS (NM_001145044)	promoter-TSS (NM_001145044)	-416	NM_001145044	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
0.496351-10	chr5	106179440	106179939	+	0	NA	intron (NR_104671, intron 2 of 3)	LTR78|LTR|ERV1	167026	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
0.177288-8	chr20	43991401	43991900	+	0	NA	promoter-TSS (NR_003189)	promoter-TSS (NR_003189)	-90	NM_033542	90196	Hs.655055	NM_033542	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	SYS1, golgi trafficking protein	protein-coding
11.5927-3	chr11	126727633	126728132	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-82760	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
0.486625-19	chr5	121297363	121297862	+	0	NA	promoter-TSS (NM_152546)	promoter-TSS (NM_152546)	-44	NM_152546	153443	Hs.107622	NM_152546	ENSG00000151304	SRFBP1	BUD22|P49|Rlb1|STRAP|p49/STRAP	serum response factor binding protein 1	protein-coding
0.231917-33	chr4	82840311	82840810	+	0	NA	Intergenic	MamRep1161|DNA|TcMar	-447478	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
5.48214-4	chr2	11094601	11095100	+	0	NA	Intergenic	LTR16C|LTR|ERVL	42787	NM_002236	3754	Hs.23735	NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
14.2481-3	chr16	52337939	52338438	+	0	NA	Intergenic	Intergenic	45712	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA
3.29754-11	chr2	10236199	10236698	+	0	NA	Intergenic	MIRb|SINE|MIR	-15910	NM_001037160	192668	Hs.27092	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
1.51811	chr3	150130257	150130756	+	0	NA	intron (NM_001303264, intron 1 of 2)	intron (NM_001303264, intron 1 of 2)	4384	NM_014779	9819	Hs.722470	NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
0.670192-16	chr7	128523564	128524063	+	0	NA	intron (NM_001135914, intron 29 of 37)	intron (NM_001135914, intron 29 of 37)	17411	NM_001195150	100130705	Hs.641532	NM_001195150	ENSG00000272899	LOC100130705	-	uncharacterized LOC100130705	protein-coding
4.15669-13	chr4	7069185	7069684	+	0	NA	intron (NM_025196, intron 1 of 3)	CpG	503	NM_025196	80273	Hs.443723	NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
1.2436-18	chr22	49241479	49241978	+	0	NA	Intergenic	Intergenic	-20854	NR_038944	100128946	Hs.535676	NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
10.013-8	chr13	80912841	80913340	+	0	NA	5' UTR (NM_001318538, exon 1 of 2)	5' UTR (NM_001318538, exon 1 of 2)	704	NM_001318538	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
0.433514-11	chr5	140943671	140944170	+	0	NA	non-coding (NR_038333, exon 3 of 3)	non-coding (NR_038333, exon 3 of 3)	6042	NR_038333	100505658	Hs.655458	NR_038333	ENSG00000246422	LOC100505658	-	uncharacterized LOC100505658	ncRNA
3.99027-28	chr1	46993611	46994110	+	0	NA	Intergenic	Intergenic	-10508	NR_038403	100507423	Hs.601863	NR_038403	ENSG00000269956	MKNK1-AS1	-	MKNK1 antisense RNA 1	ncRNA
0.319843-2	chr3	196729798	196730297	+	0	NA	3' UTR (NM_005929, exon 16 of 16)	3' UTR (NM_005929, exon 16 of 16)	270	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1	MELTF antisense RNA 1	ncRNA
0.877779-18	chr1	101491292	101491791	+	0	NA	promoter-TSS (NM_001077394)	promoter-TSS (NM_001077394)	139	NR_109849	102606465	Hs.593669	NR_109849		LOC102606465	-	uncharacterized LOC102606465	ncRNA
12.5806-3	chr2	127799375	127799874	+	0	NA	Intergenic	Intergenic	40017	NM_001320634	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
2.82329-17	chr19	18485076	18485575	+	0	NA	Intergenic	Intergenic	-11445	NM_004864	9518	Hs.616962	NM_004864	ENSG00000130513	GDF15	GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
0.0788851-21	chr3	133293044	133293543	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	15	NM_001282765	55573	Hs.518265	NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
9.35542-3	chr1	167821876	167822375	+	0	NA	intron (NM_001167749, intron 15 of 29)	intron (NM_001167749, intron 15 of 29)	61339	NM_001297772	55811	Hs.320892	NM_018417	ENSG00000143199	ADCY10	HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC	adenylate cyclase 10, soluble	protein-coding
1.15771-32	chrX	24665641	24666140	+	0	NA	promoter-TSS (NM_001163265)	promoter-TSS (NM_001163265)	-435	NM_004845	9468	Hs.660708	NM_004845	ENSG00000102230	PCYT1B	CCTB|CTB	phosphate cytidylyltransferase 1, choline, beta	protein-coding
1.87755-2	chr13	36143571	36144070	+	0	NA	intron (NM_015678, intron 45 of 57)	L2a|LINE|L2	92934	NM_001204197	26960	Hs.491172	NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
1.42065-23	chr1	150039501	150040000	+	0	NA	promoter-TSS (NM_001279354)	promoter-TSS (NM_001279354)	25	NM_001279354	11311	Hs.443750	NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
0.34328-12	chr6	53174304	53174803	+	0	NA	intron (NM_001242830, intron 1 of 6)	MLT1F|LTR|ERVL-MaLR	27862	NR_046241	647190	Hs.520189	NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
4.80172-4	chr5	35993271	35993770	+	0	NA	intron (NM_001171873, intron 2 of 5)	AluSc5|SINE|Alu	-1985	NM_152404	133688	Hs.254699	NM_152404	ENSG00000145626	UGT3A1	-	UDP glycosyltransferase family 3 member A1	protein-coding
0.979971-6	chr1	75139130	75139629	+	0	NA	promoter-TSS (NM_001002912)	promoter-TSS (NM_001002912)	43	NM_001002912	127254	Hs.531182	NM_001002912	ENSG00000178965	ERICH3	C1orf173	glutamate rich 3	protein-coding
7.12198-7	chr18	25754074	25754573	+	0	NA	intron (NM_001792, intron 1 of 15)	intron (NM_001792, intron 1 of 15)	3087	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
1.54282-3	chr5	178053773	178054272	+	0	NA	promoter-TSS (NM_020666)	promoter-TSS (NM_020666)	32	NM_020666	57396	Hs.406557	NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
8.12479	chr14	100751373	100752280	+	0	NA	Intergenic	CpG	8132	NR_106822	102466730		NR_106822	ENSG00000100811	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
0.0744648-26	chr17	16255892	16256391	+	0	NA	intron (NM_181716, intron 1 of 4)	CpG	671	NM_181716	201161	Hs.433422	NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding
0.555173-9	chr11	35638003	35638502	+	0	NA	Intergenic	Intergenic	-1483	NM_014344	24147	Hs.39384	NM_014344	ENSG00000179431	FJX1	-	four jointed box 1	protein-coding
2.13959-18	chr5	217611	218409	+	0	NA	promoter-TSS (NM_004168)	promoter-TSS (NM_004168)	287	NM_145265	133957	Hs.294145	NM_145265	ENSG00000164366	CCDC127	-	coiled-coil domain containing 127	protein-coding
0.835461-6	chr2	54683532	54684031	+	0	NA	intron (NM_003128, intron 1 of 35)	CpG	327	NM_003128	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
2.97569-13	chr1	76457165	76457664	+	0	NA	Intergenic	Intergenic	-19595	NR_125939	101927342	Hs.216363	NR_125939		LOC101927342	-	uncharacterized LOC101927342	ncRNA
3.95774-8	chr8	140659492	140659991	+	0	NA	intron (NM_001282534, intron 1 of 1)	L2a|LINE|L2	55558	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
2.41845-2	chr7	36331015	36331514	+	0	NA	intron (NM_030636, intron 6 of 7)	intron (NM_030636, intron 6 of 7)	75518	NM_001199707	23366	Hs.6224	NM_015314	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
12.4718-3	chr1	202513871	202514370	+	0	NA	intron (NM_001197131, intron 1 of 6)	intron (NM_001197131, intron 1 of 6)	4878	NM_001197131	4660	Hs.444403	NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
4.76254-5	chr9	107509938	107510437	+	0	NA	intron (NM_001329570, intron 1 of 4)	CpG	338	NM_001329570	25934	Hs.530275	NM_015469	ENSG00000136783	NIPSNAP3A	HSPC299|NIPSNAP4|TASSC	nipsnap homolog 3A	protein-coding
8.29738	chr5	159705269	159705768	+	0	NA	intron (NM_024565, intron 3 of 6)	intron (NM_024565, intron 3 of 6)	34089	NM_024565	79616	Hs.14070	NM_024565	ENSG00000135083	CCNJL	-	cyclin J like	protein-coding
41.7849	chr14	51965115	51966050	+	0	NA	intron (NM_001042481, intron 1 of 14)	MIRb|SINE|MIR	9743	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
17.8781-10	chr8	42318383	42318882	+	0	NA	intron (NM_006749, intron 4 of 10)	intron (NM_006749, intron 4 of 10)	40346	NM_001257180	6575	Hs.653173	NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
3.58526-12	chr6	170759142	170759641	+	0	NA	Intergenic	Intergenic	103026	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	proteasome subunit beta 1	protein-coding
0.649968-27	chr15	79485458	79485957	+	0	NA	intron (NR_038997, intron 1 of 1)	MLT1I|LTR|ERVL-MaLR	-16423	NR_029705	406960		NR_029705	ENSG00000207695	MIR184	EDICT|MIRN184|miR-184	microRNA 184	ncRNA
2.0412-6	chr3	127416159	127416658	+	0	NA	intron (NM_001256585, intron 5 of 6)	MLT1J|LTR|ERVL-MaLR	24627	NM_172027	80325	Hs.107812	NM_032548	ENSG00000114626	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
2.05512-13	chr20	42350446	42350945	+	0	NA	Intergenic	MER52C|LTR|ERV1	4947	NM_001008901	149699	Hs.447626	NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
9.82967-8	chr18	68131464	68131963	+	0	NA	Intergenic	Intergenic	-79886	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
0.710923-3	chr12	108959716	108960215	+	0	NA	intron (NM_213595, intron 3 of 4)	intron (NM_213595, intron 3 of 4)	4726	NM_001301140	23479	Hs.615131	NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
0.550241-2	chr8	81527194	81527693	+	0	NA	Intergenic	Intergenic	128995	NM_001105539	65986	Hs.591868	NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
0.877779-12	chr8	17704760	17705259	+	0	NA	Intergenic	Intergenic	-46583	NM_001001925	57509	Hs.7946	NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
2.62013-21	chr11	16947173	16947672	+	0	NA	intron (NM_001329631, intron 3 of 22)	intron (NM_001329631, intron 3 of 22)	88541	NM_175058	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
0.101054-37	chr18	42432587	42433086	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	117295	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
18.0688-6	chr2	137660989	137661488	+	0	NA	intron (NM_001316349, intron 2 of 27)	intron (NM_001316349, intron 2 of 27)	138106	NM_001316349	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin type 1 domain containing 7B	protein-coding
11.9111	chr18	8661831	8662330	+	0	NA	Intergenic	Intergenic	45539	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1|MTCL1AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
3.36299-18	chr1	15240138	15240637	+	0	NA	intron (NM_201628, intron 1 of 14)	intron (NM_201628, intron 1 of 14)	-10238	NM_001018000	23254	Hs.368823	NM_015209	ENSG00000189337	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
7.21246-9	chr1	31191909	31192408	+	0	NA	non-coding (NR_034182, exon 1 of 4)	non-coding (NR_034182, exon 1 of 4)	539	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
7.74691-6	chr15	50033832	50034331	+	0	NA	Intergenic	L1MA3|LINE|L1	120855	NM_001144955	56986	Hs.127432	NM_020234	ENSG00000104047	DTWD1	MDS009	DTW domain containing 1	protein-coding
0.952845-19	chr8	28746758	28747257	+	0	NA	promoter-TSS (NM_001324393)	promoter-TSS (NM_001324393)	425	NM_001172562	55756	Hs.162397	NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
2.58061-11	chr2	54926455	54926954	+	0	NA	Intergenic	SVA_C|Other|Other	-25445	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
0.979971-28	chr6	5481178	5481677	+	0	NA	intron (NM_006567, intron 4 of 6)	intron (NM_006567, intron 4 of 6)	-23119	NR_125848	101927972	Hs.668417	NR_125846	ENSG00000269985	LOC101927972	-	uncharacterized LOC101927972	ncRNA
10.1547	chr18	60990158	60990657	+	0	NA	Intergenic	Intergenic	-3794	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
1.42065-2	chr12	69979241	69979740	+	0	NA	promoter-TSS (NR_037475)	promoter-TSS (NR_037475)	28	NM_001198842	10576	Hs.189772	NM_006431	ENSG00000166226	CCT2	99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta	chaperonin containing TCP1 subunit 2	protein-coding
1.79799-25	chr12	112279634	112280498	+	0	NA	promoter-TSS (NM_003668)	promoter-TSS (NM_003668)	34	NM_139078	8550	Hs.333120	NM_003668	ENSG00000089022	MAPKAPK5	MAPKAP-K5|MK-5|MK5|PRAK	mitogen-activated protein kinase-activated protein kinase 5	protein-coding
2.33587-8	chr8	66149283	66149782	+	0	NA	Intergenic	Intergenic	-56957	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA
1.33122-24	chr1	63456794	63457293	+	0	NA	Intergenic	Intergenic	207266	NM_178221	84938	Hs.7353	NM_032852	ENSG00000125703	ATG4C	APG4-C|APG4C|AUTL1|AUTL3	autophagy related 4C cysteine peptidase	protein-coding
6.30784-17	chr21	33971818	33972317	+	0	NA	Intergenic	Intergenic	12846	NR_036552	56683	Hs.5811	NM_017835	ENSG00000159079	C21orf59	C21orf48|CILD26|FBB18|Kur	chromosome 21 open reading frame 59	protein-coding
19.6257-5	chr3	24927839	24928338	+	0	NA	intron (NM_001290216, intron 2 of 10)	AluJb|SINE|Alu	57274	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
8.96196-4	chr22	17979687	17980186	+	0	NA	intron (NM_001290046, intron 5 of 18)	intron (NM_001290046, intron 5 of 18)	23308	NM_001290047	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	CECR2, histone acetyl-lysine reader	protein-coding
1.57391	chr18	72927523	72928022	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	4288	NM_001308210	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
0.496351-39	chr9	95824191	95824690	+	0	NA	intron (NM_001287008, intron 1 of 3)	intron (NM_001287008, intron 1 of 3)	3470	NM_001287006	203328	Hs.88417	NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
2.0204-12	chr6	76602999	76603498	+	0	NA	intron (NM_001300899, intron 28 of 32)	intron (NM_001300899, intron 28 of 32)	144339	NM_004999	4646	Hs.149387	NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
5.78396-5	chr14	50467795	50468294	+	0	NA	non-coding (NR_126500, exon 3 of 3)	non-coding (NR_126500, exon 3 of 3)	5193	NR_126496	283551	Hs.292580	NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
0.310503-27	chr11	15675850	15676349	+	0	NA	intron (NM_001293172, intron 1 of 2)	intron (NM_001293172, intron 1 of 2)	10668	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
1.49967-23	chr6	15400287	15400786	+	0	NA	intron (NM_004973, intron 2 of 17)	intron (NM_004973, intron 2 of 17)	151450	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
4.90797-9	chr1	12963037	12963536	+	0	NA	Intergenic	SVA_D|Other|Other	-13181	NM_001012276	391002	Hs.553832	NM_001012276	ENSG00000182330	PRAMEF8	PRAMEF24	PRAME family member 8	protein-coding
2.20404-2	chr9	37422104	37422603	+	0	NA	promoter-TSS (NM_012203)	promoter-TSS (NM_012203)	-354	NM_012203	9380	Hs.155742	NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
3.53596-8	chr16	85160344	85160843	+	0	NA	Intergenic	Intergenic	-10163	NR_033984	400548	Hs.592054	NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
12.3958	chr4	173960734	173961233	+	0	NA	intron (NM_001034845, intron 12 of 12)	intron (NM_001034845, intron 12 of 12)	-128921	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19.9568-10	chr2	183493595	183494094	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-86924	NR_073367	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
9.39302-28	chr3	116193461	116193960	+	0	NA	Intergenic	Intergenic	-29325	NM_002338	4045	Hs.26409	NM_002338	ENSG00000185565	LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
1.58641-10	chr6	79577647	79578146	+	0	NA	intron (NM_001010844, intron 1 of 3)	intron (NM_001010844, intron 1 of 3)	635	NM_001010844	134728	Hs.656212	NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin 1 receptor associated kinase 1 binding protein 1	protein-coding
2.62013-7	chr6	34113695	34114194	+	0	NA	promoter-TSS (NM_001282847)	promoter-TSS (NM_001282847)	-30	NM_000841	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
5.48214-13	chr1	53587256	53587755	+	0	NA	intron (NM_001287596, intron 2 of 3)	L3|LINE|CR1	20799	NM_001287596	6512	Hs.104637	NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
0.80399-13	chr11	68778406	68778905	+	0	NA	intron (NM_001098515, intron 1 of 2)	CpG	-1167	NR_120541	101928200	Hs.703759	NR_120541	ENSG00000256508	MRGPRF-AS1	-	MRGPRF antisense RNA 1	ncRNA
1.45694-23	chr3	124769521	124770020	+	0	NA	intron (NM_020733, intron 1 of 16)	intron (NM_020733, intron 1 of 16)	5032	NM_020733	57493	Hs.477420	NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
4.30626-2	chr13	73355657	73356156	+	0	NA	promoter-TSS (NM_006346)	promoter-TSS (NM_006346)	-324	NM_006346	10464	Hs.441926	NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
0.570004	chr4	123015167	123015666	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-76342	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
1.73925-2	chr16	54276050	54276549	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	28492	NR_126340	100996338	Hs.232014	NR_126340		LOC100996338	-	uncharacterized LOC100996338	ncRNA
0.282604-13	chr13	45491828	45492327	+	0	NA	Intergenic	tRNA-Glu-GAG_|tRNA|tRNA	71536	NM_012345	26747	Hs.525006	NM_012345	ENSG00000083635	NUFIP1	NUFIP|bA540M5.1	NUFIP1, FMR1 interacting protein 1	protein-coding
4.31798-6	chr1	198818161	198818660	+	0	NA	intron (NR_040073, intron 2 of 2)	intron (NR_040073, intron 2 of 2)	9701	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
6.10834	chr16	90014327	90014826	+	0	NA	promoter-TSS (NM_017702)	promoter-TSS (NM_017702)	-563	NM_001242821	54849	Hs.62771	NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
0.34328-7	chr19	1479010	1479732	+	0	NA	promoter-TSS (NM_152482)	promoter-TSS (NM_152482)	-143	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
1.37869-42	chr13	47370596	47371095	+	0	NA	intron (NM_001984, intron 1 of 9)	CpG	522	NM_001984	2098	Hs.432491	NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
20.1011-3	chr11	129328586	129329085	+	0	NA	Intergenic	Intergenic	82954	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
0.5061-14	chr6	170264667	170265166	+	0	NA	Intergenic	Intergenic	-65995	NR_026781	401288	Hs.556095	NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
0.296531-42	chr6	155316348	155316847	+	0	NA	Intergenic	CpG	-94826	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
0.680339-24	chr19	6092360	6092859	+	0	NA	intron (NM_134433, intron 1 of 16)	intron (NM_134433, intron 1 of 16)	18055	NM_134433	5990	Hs.465709	NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
9.17215-10	chr11	76857636	76858135	+	0	NA	intron (NM_001127179, intron 3 of 26)	intron (NM_001127179, intron 3 of 26)	18569	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
2.58848-14	chr2	227700469	227700968	+	0	NA	promoter-TSS (NM_001167608)	promoter-TSS (NM_001167608)	47	NM_032276	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RRP4	rhomboid domain containing 1	protein-coding
2.08309-4	chr22	40197167	40197666	+	0	NA	intron (NM_152512, intron 5 of 6)	intron (NM_152512, intron 5 of 6)	92378	NM_152512	150350	Hs.474869	NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
2.47184	chr5	130966183	130966682	+	0	NA	intron (NM_001164390, intron 1 of 17)	intron (NM_001164390, intron 1 of 17)	4497	NM_001164390	51735	Hs.483329	NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
18.0967	chr15	78197454	78197953	+	0	NA	Intergenic	Intergenic	21485	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family member A pseudogene	pseudo
2.11832-14	chr4	149366497	149366996	+	0	NA	Intergenic	CpG-20176	-3074	NM_001166104	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
4.60924	chr22	37814628	37815127	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	8628	NR_110512	114794	Hs.344170	NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
3.49692-13	chr4	115233439	115233938	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-285870	NM_001322113	7368	Hs.144197	NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
1.93142	chr2	155956290	155956789	+	0	NA	Intergenic	L1M1|LINE|L1	401446	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding
0.254883-29	chr10	46743126	46743625	+	0	NA	intron (NR_003611, intron 8 of 8)	intron (NR_003611, intron 8 of 8)	19517	NR_003611	399761	Hs.711898	NM_001040053	ENSG00000204177	BMS1P5	BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3	BMS1, ribosome biogenesis factor pseudogene 5	pseudo
6.0206-10	chr4	65883933	65884432	+	0	NA	Intergenic	Intergenic	-13964	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
2.38072-8	chr9	22447161	22447660	+	0	NA	exon (NM_022160, exon 1 of 2)	exon (NM_022160, exon 1 of 2)	570	NM_022160	63951	Hs.371976	NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
0.0656377-20	chr9	128759513	128760012	+	0	NA	Intergenic	Intergenic	249284	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
0.2365-13	chr2	190305185	190306440	+	0	NA	promoter-TSS (NM_001303096)	promoter-TSS (NM_001303096)	-347	NM_032168	84128	Hs.399984	NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
20.1457	chr11	22802507	22803006	+	0	NA	intron (NM_001143830, intron 7 of 7)	intron (NM_001143830, intron 7 of 7)	48169	NR_135213	258010	Hs.349096	NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
0.400052-20	chr2	238199950	238200449	+	0	NA	Intergenic	Intergenic	122651	NM_057166	1293	Hs.233240	NM_004369	ENSG00000163359	COL6A3	BTHLM1|DYT27|UCMD1	collagen type VI alpha 3 chain	protein-coding
12.1254	chr5	152502419	152502918	+	0	NA	Intergenic	Intergenic	-150759	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
12.6761	chr20	60515561	60516060	+	0	NA	TTS (NM_001794)	TTS (NM_001794)	12908	NR_031658	100302168		NR_031658	ENSG00000130699	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
0.291884-33	chr1	201188557	201189056	+	0	NA	intron (NM_001164586, intron 18 of 23)	intron (NM_001164586, intron 18 of 23)	28853	NM_001164586	91156	Hs.519024	NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
5.48214-11	chr12	6936492	6936991	+	0	NA	promoter-TSS (NM_014262)	promoter-TSS (NM_014262)	-797	NM_014262	10536	Hs.631655	NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
6.28932-10	chr14	65569890	65570389	+	0	NA	promoter-TSS (NM_002382)	promoter-TSS (NM_002382)	-726	NR_073138	4149	Hs.285354	NM_002382	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
2.98432-5	chr8	37093465	37093964	+	0	NA	intron (NR_031672, intron 2 of 2).2	intron (NR_031672, intron 2 of 2).2	114243	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
3.50665-2	chr12	37936869	37937368	+	0	NA	Intergenic	SST1|Satellite|centr	-773439	NM_001308340	144245	Hs.259305	NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
17.3993-9	chr8	135618067	135618566	+	0	NA	intron (NM_001029939, intron 6 of 16)	L2c|LINE|L2	8002	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
9.78811-5	chr15	56661304	56661803	+	0	NA	intron (NM_001286449, intron 2 of 12)	AluJb|SINE|Alu	3931	NM_001286449	374618	Hs.511476	NM_198524	ENSG00000151575	TEX9	-	testis expressed 9	protein-coding
15.7025	chr16	73105155	73105654	+	0	NA	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-12870	NM_001164766	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
9.46922-7	chr2	136899040	136899539	+	0	NA	Intergenic	Intergenic	-23564	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
4.71083-5	chr15	64338709	64339208	+	0	NA	promoter-TSS (NM_014326)	promoter-TSS (NM_014326)	-437	NM_014326	23604	Hs.237886	NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
0.428718-14	chr12	90344989	90345488	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	3768	NR_135019	105369891	Hs.148998	NR_135019	ENSG00000257725	LOC105369891	-	uncharacterized LOC105369891	ncRNA
0.245682-36	chr5	112196617	112197116	+	0	NA	promoter-TSS (NM_001204196)	promoter-TSS (NM_001204196)	-19	NM_001204194	6728	Hs.637001	NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
5.81699-10	chr4	9926318	9926817	+	0	NA	intron (NM_001001290, intron 7 of 12)	intron (NM_001001290, intron 7 of 12)	96547	NM_020041	56606	Hs.444612	NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
12.8735-2	chr16	506780	507279	+	0	NA	intron (NM_014700, intron 1 of 13)	intron (NM_014700, intron 1 of 13)	-17821	NM_001142272	9727	Hs.531642	NM_014700	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
1.66853-7	chr15	83194521	83195020	+	0	NA	intron (NR_111962, intron 9 of 10)	intron (NR_111962, intron 9 of 10)	-11793	NR_026811	80154	Hs.454640	NM_025084		GOLGA2P10	-	golgin A2 pseudogene 10	pseudo
0.25028-15	chr7	106684783	106685282	+	0	NA	promoter-TSS (NM_002736)	promoter-TSS (NM_002736)	-146	NM_002736	5577	Hs.433068	NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding
26.6354-2	chr13	53323452	53323951	+	0	NA	Intergenic	Intergenic	-9754	NM_001011705	11061	Hs.421391	NM_007015	ENSG00000136110	CNMD	BRICD3|CHM-I|CHM1|LECT1|MYETS1	chondromodulin	protein-coding
0.589858-40	chr8	128574655	128575154	+	0	NA	Intergenic	Intergenic	-80520	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
2.19683-7	chr9	132404245	132404744	+	0	NA	promoter-TSS (NM_177999)	promoter-TSS (NM_177999)	-46	NM_017873	140459	Hs.125037	NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
0.172766-35	chrX	119174111	119174610	+	0	NA	intron (NR_131238, intron 1 of 4)	MER76-int|LTR|ERVL	4159	NR_131238	101928969	Hs.659544	NR_131238	ENSG00000258545	RHOXF1-AS1	-	RHOXF1 antisense RNA 1	ncRNA
4.698-2	chr5	38420701	38421200	+	0	NA	intron (NM_152403, intron 12 of 21)	intron (NM_152403, intron 12 of 21)	17316	NM_182798	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
4.89455-16	chr4	1340579	1341078	+	0	NA	promoter-TSS (NM_001317935)	promoter-TSS (NM_001317935)	-226	NM_001317934	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
3.36299-5	chr19	32896634	32897133	+	0	NA	promoter-TSS (NR_046201)	promoter-TSS (NR_046201)	-139	NM_207325	147991	Hs.194392	NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like 3 (C. elegans)	protein-coding
20.048	chr2	52752036	52752535	+	0	NA	Intergenic	LTR1D|LTR|ERV1	154499	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA
0.310503-25	chrX	138424555	138425054	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-104174	NR_028597	6719	Hs.730315	NR_028597		SRD5A1P1	SRD5AP1	steroid 5 alpha-reductase 1 pseudogene 1	pseudo
4.49772-2	chr2	54545895	54546394	+	0	NA	Intergenic	LTR53|LTR|ERVL	-11927	NM_001100396	129852	Hs.732626	NM_173486	ENSG00000177994	C2orf73	-	chromosome 2 open reading frame 73	protein-coding
7.23538-11	chr4	148978625	148979124	+	0	NA	intron (NM_024605, intron 20 of 22)	L2b|LINE|L2	275128	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
1.28427-12	chr12	109748184	109748683	+	0	NA	Intergenic	Intergenic	-1408	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
4.64706	chr9	128387077	128387576	+	0	NA	intron (NM_001006617, intron 4 of 11)	SVA_F|Other|Other	82187	NM_001006621	79109	Hs.495138	NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
4.58421-12	chr19	5308977	5309476	+	0	NA	intron (NM_130853, intron 1 of 28)	MIRc|SINE|MIR	31588	NM_130853	5802	Hs.744928	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase, receptor type S	protein-coding
3.29754-7	chr18	32447282	32447781	+	0	NA	3' UTR (NM_032981, exon 8 of 8)	3' UTR (NM_032981, exon 8 of 8)	49229	NM_032981	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
3.9794	chr17	66453691	66454190	+	0	NA	promoter-TSS (NM_017983)	promoter-TSS (NM_017983)	-275	NM_017983	55062	Hs.463964	NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
3.38187-6	chr1	172790586	172791085	+	0	NA	Intergenic	Intergenic	162687	NM_001302746	356	Hs.2007	NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
0.181814-21	chr6	112314437	112314936	+	0	NA	Intergenic	Intergenic	-60592	NR_125354	8838	Hs.558428	NM_003880	ENSG00000112761	WISP3	CCN6|LIBC|PPAC|PPD|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding
0.362122-14	chr12	113590976	113591475	+	0	NA	intron (NM_001144872, intron 4 of 7)	CpG-5797	3562	NM_001144872	387885	Hs.486856	NM_001144872	ENSG00000186710	CFAP73	CCDC42B|MIA2	cilia and flagella associated protein 73	protein-coding
4.05607	chr1	54619554	54620053	+	0	NA	Intergenic	Intergenic	-1124	NM_201546	200008	Hs.568555	NM_201546	ENSG00000157211	CDCP2	-	CUB domain containing protein 2	protein-coding
0.0833099-39	chr6	24126136	24126635	+	0	NA	promoter-TSS (NM_080723)	promoter-TSS (NM_080723)	-29	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
8.06875-14	chr8	25757010	25757509	+	0	NA	intron (NM_022659, intron 7 of 15)	intron (NM_022659, intron 7 of 15)	145381	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
0.721166-5	chr11	12701903	12702402	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	6183	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
1.39662-20	chr1	120611796	120612295	+	0	NA	5' UTR (NM_001200001, exon 1 of 22)	5' UTR (NM_001200001, exon 1 of 22)	272	NM_001200001	4853	Hs.487360	NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
1.79799	chr9	134836336	134836835	+	0	NA	intron (NM_004269, intron 3 of 7)	intron (NM_004269, intron 3 of 7)	118689	NM_004269	9442	Hs.374262	NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|TRAP37	mediator complex subunit 27	protein-coding
9.24453-13	chr6	64186252	64186751	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-95416	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
1.21478-20	chr16	47177583	47178082	+	0	NA	promoter-TSS (NR_110903)	promoter-TSS (NR_110903)	104	NM_018092	81831	Hs.645802	NM_018092	ENSG00000171208	NETO2	BTCL2|NEOT2	neuropilin and tolloid like 2	protein-coding
3.99027-21	chr17	81155871	81156370	+	0	NA	Intergenic	Intergenic	-18546	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
9.17215-18	chr17	43175802	43176301	+	0	NA	intron (NM_021079, intron 7 of 11)	intron (NM_021079, intron 7 of 11)	15750	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
1.15771-17	chr2	127729546	127730045	+	0	NA	Intergenic	CpG	73333	NM_001322244	101929926	Hs.98984	NM_001322244	ENSG00000237524	LOC101929926	-	uncharacterized LOC101929926	protein-coding
5.08638-3	chr21	32956211	32956710	+	0	NA	Intergenic	SVA_D|Other|Other	24902	NM_001321023	150051	Hs.708976	NM_001321023		LOC150051	-	uncharacterized LOC150051	protein-coding
3.8405-15	chr1	206807610	206808109	+	0	NA	Intergenic	Intergenic	-1022	NM_001004023	8444	Hs.164267	NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
0.835461-2	chr17	7893327	7893826	+	0	NA	Intergenic	CpG	-12412	NM_000180	3000	Hs.592109	NM_000180	ENSG00000132518	GUCY2D	CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
1.0513-10	chr3	110245602	110246101	+	0	NA	Intergenic	Intergenic	542955	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
2.26945-10	chr1	215741060	215741559	+	0	NA	intron (NM_016121, intron 1 of 17)	intron (NM_016121, intron 1 of 17)	587	NM_001319295	51133	Hs.335139	NM_016121	ENSG00000136636	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
0.856568-11	chr12	49075599	49076098	+	0	NA	intron (NM_017822, intron 1 of 9)	CpG	187	NM_017822	54934	Hs.505412	NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
2.61219-27	chr6	156497084	156497583	+	0	NA	Intergenic	Intergenic	229402	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
5.00313-10	chr11	74659952	74660451	+	0	NA	promoter-TSS (NM_001270380)	promoter-TSS (NM_001270380)	31	NM_001270380	143570	Hs.370145	NM_182969	ENSG00000166435	XRRA1	-	X-ray radiation resistance associated 1	protein-coding
2.89883-12	chr8	80827312	80827811	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-43589	NR_110954	101927040	Hs.350876	NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
1.81115-6	chrX	77186505	77187004	+	0	NA	intron (NR_104109, intron 1 of 9)	SVA_D|Other|Other	20601	NM_000052	538	Hs.496414	NM_000052	ENSG00000165240	ATP7A	DSMAX|MK|MNK|SMAX3	ATPase copper transporting alpha	protein-coding
0.76756-25	chr20	46928155	46928654	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-60250	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19.8297-3	chr20	21246095	21247001	+	0	NA	Intergenic	Intergenic	-37374	NM_012255	22803	Hs.255932	NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
0.0130484-10	chr1	159861251	159861750	+	0	NA	intron (NM_012337, intron 2 of 11)	intron (NM_012337, intron 2 of 11)	8369	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
0.675262-24	chr3	50273138	50273637	+	0	NA	promoter-TSS (NM_001282618)	promoter-TSS (NM_001282618)	-202	NM_002070	2771	Hs.77269	NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
0.15923-16	chr3	181900293	181900792	+	0	NA	Intergenic	Intergenic	230390	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA
5.05845-21	chr9	34039405	34039904	+	0	NA	intron (NM_018449, intron 1 of 28)	SVA_C|Other|Other	9293	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
3.77786-12	chr9	74421653	74422152	+	0	NA	Intergenic	Intergenic	-38102	NM_001135820	23670	Hs.494146	NM_013390	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
6.77781-2	chr2	74231346	74231845	+	0	NA	intron (NM_001287491, intron 2 of 10)	intron (NM_001287491, intron 2 of 10)	18064	NM_001287491	200424	Hs.516107	NM_001287491	ENSG00000187605	TET3	hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
32.3284-2	chr8	62296600	62297099	+	0	NA	intron (NM_173519, intron 3 of 5)	intron (NM_173519, intron 3 of 5)	96324	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
1.69411	chr13	69839356	69839855	+	0	NA	intron (NR_125752, intron 1 of 3)	L1PA14|LINE|L1	43127	NR_125752	103689913	Hs.585628	NR_125752		LINC00383	LINC00401	long intergenic non-protein coding RNA 383	ncRNA
0.0305075-9	chrX	131353268	131353767	+	0	NA	promoter-TSS (NR_073150)	promoter-TSS (NR_073150)	-9	NM_001271186	57826	Hs.119889	NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
5.00313-8	chr1	226310158	226310657	+	0	NA	Intergenic	CpG	59979	NR_002315	440926	Hs.533624	NR_002315		H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
0.141246-16	chr15	44091398	44091897	+	0	NA	promoter-TSS (NM_001199885)	promoter-TSS (NM_001199885)	648	NM_001258032	619189	Hs.424126	NM_001258031	ENSG00000184716	SERINC4	-	serine incorporator 4	protein-coding
0.920515-7	chr11	24945541	24946040	+	0	NA	intron (NM_001252008, intron 7 of 11)	AluSc|SINE|Alu	427274	NM_001009909	338645	Hs.144138	NM_001009909	ENSG00000187398	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding
0.287242-8	chr5	50683508	50684007	+	0	NA	intron (NM_002202, intron 3 of 5)	intron (NM_002202, intron 3 of 5)	-4591	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
1.16339-4	chr2	192588694	192589193	+	0	NA	Intergenic	Intergenic	34036	NR_131917	105747689	Hs.104972	NR_131917		LOC105747689	-	uncharacterized LOC105747689	ncRNA
2.61219-5	chr10	132426258	132426757	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	334424	NR_036180	100422867		NR_036180	ENSG00000264803	MIR378C	mir-378c	microRNA 378c	ncRNA
4.32974-6	chr6	34205686	34206185	+	0	NA	promoter-TSS (NM_145905)	promoter-TSS (NM_145905)	-633	NM_145905	3159	Hs.518805	NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
1.37272-7	chr2	129139711	129140210	+	0	NA	Intergenic	Intergenic	-63789	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
5.98599-5	chrX	40414496	40414995	+	0	NA	Intergenic	L1PA15|LINE|L1	-25471	NM_005765	10159	Hs.495960	NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
0.472076-31	chrX	52987782	52988281	+	0	NA	promoter-TSS (NM_001321179).2	promoter-TSS (NM_001321179).2	39	NM_001321183	727866	Hs.6451	NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
0.123337-3	chr4	22943227	22943726	+	0	NA	Intergenic	Intergenic	227764	NR_102357	57733	Hs.653107	NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
1.39063-24	chr16	11144726	11145225	+	0	NA	intron (NM_015226, intron 16 of 22)	intron (NM_015226, intron 16 of 22)	106630	NM_001243403	23274	Hs.35490	NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16 member A	protein-coding
0.400052-32	chr13	98507685	98508184	+	0	NA	Intergenic	Intergenic	-97995	NM_002271	3843	Hs.712598	NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
36.0033-3	chr2	177896121	177896620	+	0	NA	Intergenic	Intergenic	-181052	NM_001330249	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
4.63442-5	chr11	10757164	10757663	+	0	NA	Intergenic	Intergenic	-15121	NM_014633	9646	Hs.725151	NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
9.82967-4	chr3	116238339	116238838	+	0	NA	Intergenic	SVA_B|Other|Other	-74203	NM_002338	4045	Hs.26409	NM_002338	ENSG00000185565	LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
5.867-10	chr18	70339453	70339952	+	0	NA	Intergenic	Intergenic	-127979	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
3.1158-14	chr19	46768433	46768932	+	0	NA	Intergenic	Intergenic	-31621	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3 alpha subunit	protein-coding
21.0237-5	chr5	60662257	60662756	+	0	NA	intron (NM_020928, intron 1 of 13)	AluJb|SINE|Alu	34406	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	AFND	zinc finger SWIM-type containing 6	protein-coding
4.42493-5	chr14	102414317	102414816	+	0	NA	Intergenic	CpG	-16299	NM_001376	1778	Hs.614080	NM_001376	ENSG00000197102	DYNC1H1	CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
2.43364-11	chr17	4607371	4607870	+	0	NA	promoter-TSS (NR_103482)	promoter-TSS (NR_103482)	12	NM_014389	27043	Hs.744899	NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
2.74905	chr5	1930742	1931241	+	0	NA	Intergenic	CpG	43546	NR_109912	101929081	Hs.519180	NR_109912	ENSG00000249326	CTD-2194D22.4	-	uncharacterized LOC101929081	ncRNA
2.57275-6	chr12	121148074	121148573	+	0	NA	promoter-TSS (NM_001080533)	promoter-TSS (NM_001080533)	85	NM_001080533	84747	Hs.127610	NM_032661	ENSG00000175970	UNC119B	POC7B	unc-119 lipid binding chaperone B	protein-coding
0.241089-6	chr6	161413003	161413502	+	0	NA	intron (NM_006724, intron 1 of 25)	CpG	493	NR_120425	4216	Hs.390428	NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
39.7469	chr1	175363778	175364277	+	0	NA	intron (NM_001328635, intron 5 of 22)	intron (NM_001328635, intron 5 of 22)	-201798	NM_001319230	9674	Hs.518138	NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
0.0568285-10	chr18	20822088	20822587	+	0	NA	intron (NM_138375, intron 7 of 9)	intron (NM_138375, intron 7 of 9)	86548	NM_138375	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
0.0436481-10	chr2	172289767	172290266	+	0	NA	promoter-TSS (NM_025000)	promoter-TSS (NM_025000)	603	NM_001321160	79828	Hs.135146	NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase like 8	protein-coding
0.376307-44	chr4	186950781	186951280	+	0	NA	Intergenic	Intergenic	-39279	NM_003265	7098	Hs.657724	NM_003265	ENSG00000164342	TLR3	CD283|IIAE2	toll like receptor 3	protein-coding
1.95179-2	chr10	70883714	70884213	+	0	NA	promoter-TSS (NM_004896)	promoter-TSS (NM_004896)	54	NM_001318946	9559	Hs.499925	NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26, retromer complex component A	protein-coding
0.409586-33	chr12	67819761	67820260	+	0	NA	Intergenic	MIR3|SINE|MIR	-93852	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
0.296531-130	chr9_gl000199_random	149633	150132	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
4.03403-7	chr9	80189618	80190117	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	73365	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
1.45694-14	chr6	158185410	158185909	+	0	NA	Intergenic	Intergenic	-58544	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
0.101054-36	chr18	75032912	75033411	+	0	NA	Intergenic	Intergenic	71153	NM_001480	2587	Hs.272191	NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
0.181814-29	chr9	135134447	135134946	+	0	NA	Intergenic	Intergenic	95676	NM_015046	23064	Hs.460317	NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAR1|bA479K20.2	senataxin	protein-coding
13.8195-6	chr6	31850103	31850602	+	0	NA	intron (NM_025256, intron 24 of 26).5	intron (NM_025256, intron 24 of 26).5	-3529	NM_001178044	80736	Hs.335355	NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|NG22|TPPT	solute carrier family 44 member 4	protein-coding
0.385789-35	chr3	169899268	169899767	+	0	NA	promoter-TSS (NM_001308116)	promoter-TSS (NM_001308116)	20	NM_001308116	80012	Hs.529592	NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
0.589858-25	chr19	50379716	50380215	+	0	NA	promoter-TSS (NM_024682)	promoter-TSS (NM_024682)	-459	NM_001278159	84335	Hs.515542	NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
1.86419-6	chr20	5930941	5931440	+	0	NA	promoter-TSS (NM_015939)	promoter-TSS (NM_015939)	14	NM_001281467	51605	Hs.128791	NM_015939	ENSG00000089195	TRMT6	CGI-09|GCD10|Gcd10p	tRNA methyltransferase 6	protein-coding
11.1351-2	chr19	23317574	23318073	+	0	NA	intron (NM_001277403, intron 2 of 3)	SVA_E|Other|Other	18046	NM_001277403	100129543	Hs.427120	NM_001277403	ENSG00000183850	ZNF730	-	zinc finger protein 730	protein-coding
1.89096-3	chrUn_gl000225	100578	101077	+	0	NA	NA	Intergenic	NA	NA								
20.2045-6	chr17	55129229	55129728	+	0	NA	Intergenic	Intergenic	6639	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
1.53045-9	chr6	8102033	8102822	+	0	NA	intron (NM_001135650, intron 1 of 3)	intron (NM_001135650, intron 1 of 3)	401	NM_004280	9521	Hs.602353	NM_004280	ENSG00000124802	EEF1E1	AIMP3|P18	eukaryotic translation elongation factor 1 epsilon 1	protein-coding
1.78486-11	chr3	159484276	159484775	+	0	NA	intron (NR_121669, intron 2 of 2)	intron (NR_121669, intron 2 of 2)	1876	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
3.37242-9	chr4	54243468	54243967	+	0	NA	promoter-TSS (NM_001134937)	promoter-TSS (NM_001134937)	-103	NM_001134937	81608	Hs.555109	NM_030917	ENSG00000145216	FIP1L1	FIP1|Rhe|hFip1	factor interacting with PAPOLA and CPSF1	protein-coding
28.1816-5	chr9	130063071	130063570	+	0	NA	intron (NM_032293, intron 2 of 27)	intron (NM_032293, intron 2 of 27)	36564	NR_104591	84253	Hs.29304	NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
3.63512-29	chr6	42653754	42654253	+	0	NA	intron (NM_015255, intron 44 of 46)	SVA_B|Other|Other	36355	NM_000322	5961	Hs.654489	NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
0.80399-15	chr21	25747527	25748026	+	0	NA	Intergenic	L1PBa|LINE|L1	-53278	NR_135519	105372751	Hs.652040	NR_135519	ENSG00000237484	LINC01684	-	long intergenic non-protein coding RNA 1684	ncRNA
6.36388-8	chr12	117877210	117877709	+	0	NA	Intergenic	Intergenic	-77852	NM_000620	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
0.127808-17	chr2	23608503	23609002	+	0	NA	intron (NM_052920, intron 1 of 13)	CpG	454	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
0.241089-2	chr4	87353680	87354179	+	0	NA	intron (NM_002753, intron 1 of 13)	HERV16-int|LTR|ERVL	20354	NM_002753	5602	Hs.13438	NM_002753	ENSG00000109339	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
0.94744-13	chr12	53870548	53871047	+	0	NA	intron (NM_001128911, intron 14 of 14)	intron (NM_001128911, intron 14 of 14)	12545	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC338	PCBP2 overlapping transcript 1	ncRNA
1.04025-14	chr11	2011987	2012486	+	0	NA	promoter-TSS (NR_126400)	promoter-TSS (NR_126400)	-90	NR_126400	104355220	Hs.17666	NR_126400	ENSG00000232987	LINC01219	-	long intergenic non-protein coding RNA 1219	ncRNA
0.609802-24	chr16	20817832	20818331	+	0	NA	promoter-TSS (NM_080663)	promoter-TSS (NM_080663)	-286	NM_001142725	112479	Hs.248437	NM_080663	ENSG00000196678	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding
1.46302-13	chr2	2851046	2851545	+	0	NA	Intergenic	Intergenic	278503	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
1.53045-13	chr20	34693683	34694182	+	0	NA	intron (NM_001258329, intron 1 of 22)	intron (NM_001258329, intron 1 of 22)	13300	NM_001258329	2036	Hs.437422	NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
3.1158-9	chr1	35497135	35497634	+	0	NA	intron (NM_007167, intron 1 of 15)	CpG	185	NM_007167	9204	Hs.533986	NM_007167	ENSG00000163867	ZMYM6	Buster2|MYM|ZBED7|ZNF198L4|ZNF258	zinc finger MYM-type containing 6	protein-coding
0.649968-10	chr13	113864062	113864561	+	0	NA	exon (NM_001008895, exon 2 of 20)	exon (NM_001008895, exon 2 of 20)	492	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
2.5649-3	chr7	120954161	120954660	+	0	NA	Intergenic	Intergenic	-11011	NM_016087	51384	Hs.272375	NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
3.42944-4	chr17	16373138	16373637	+	0	NA	intron (NR_027178, intron 6 of 6)	L1M6|LINE|L1	22118	NM_001113567	388341	Hs.25425	NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
0.491485-9	chr13	26596720	26597219	+	0	NA	3' UTR (NM_001313741, exon 36 of 36)	3' UTR (NM_001313741, exon 36 of 36)	28229	NM_001007538	387914	Hs.433791	NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
3.65523-2	chr11	46917335	46917834	+	0	NA	intron (NM_002334, intron 9 of 37)	intron (NM_002334, intron 9 of 37)	22589	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
0.190881-23	chr20	36965940	36966439	+	0	NA	TTS (NM_001725)	TTS (NM_001725)	-8625	NM_004139	3929	Hs.154078	NM_004139	ENSG00000129988	LBP	BPIFD2	lipopolysaccharide binding protein	protein-coding
12.1183-4	chrX	152029566	152030065	+	0	NA	intron (NM_015922, intron 4 of 7)	L1ME3C|LINE|L1	30304	NM_001129765	50814	Hs.57698	NM_015922	ENSG00000147383	NSDHL	H105E3|SDR31E1|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding
1.20331-8	chr3	32859139	32859638	+	0	NA	promoter-TSS (NM_001039111)	promoter-TSS (NM_001039111)	-122	NM_001039111	131405	Hs.113170	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	tripartite motif containing 71	protein-coding
2.04815-9	chr4	190565105	190565604	+	0	NA	Intergenic	Intergenic	-15406	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
0.209071-22	chr5	85712	86211	+	0	NA	Intergenic	Intergenic	-54412	NM_052909	153478	Hs.535800	NM_052909	ENSG00000153404	PLEKHG4B	-	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
8.53872-6	chr5	36198799	36199298	+	0	NA	intron (NM_001287341, intron 11 of 12)	intron (NM_001287341, intron 11 of 12)	42445	NM_001287340	133686	Hs.81907	NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
0.195421-14	chr2	111829244	111829743	+	0	NA	intron (NM_001142807, intron 16 of 17)	intron (NM_001142807, intron 16 of 17)	43672	NR_122074	400997	Hs.652337	NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
0.0568285-11	chr4	17495808	17496307	+	0	NA	intron (NM_001306140, intron 3 of 5)	LTR72|LTR|ERV1	17800	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
1.82435-3	chr4	8910234	8910733	+	0	NA	Intergenic	CpG	-36940	NM_001306142	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
1.37869-41	chr14	21657206	21657705	+	0	NA	Intergenic	SVA_D|Other|Other	16207	NR_038970	283624	Hs.525210	NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
1.41463-20	chrX	89830267	89830766	+	0	NA	Intergenic	MER50-int|LTR|ERV1	653576	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	TGFB induced factor homeobox 2 like, X-linked	protein-coding
1.34896-5	chr14	85435690	85436189	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-417680	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
2.16811-15	chr3	150885998	150886497	+	0	NA	intron (NM_053002, intron 10 of 42)	intron (NM_053002, intron 10 of 42)	34741	NM_013308	29909	Hs.549152	NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
0.241089-42	chr1	245543493	245543992	+	0	NA	intron (NM_018012, intron 3 of 14)	intron (NM_018012, intron 3 of 14)	225455	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
3.41989-9	chr9	12775794	12776293	+	0	NA	intron (NM_203403, intron 1 of 1)	intron (NM_203403, intron 1 of 1)	1031	NM_203403	286343	Hs.445356	NM_203403	ENSG00000153714	LURAP1L	C9orf150|HYST0841|LRAP35b|bA3L8.2	leucine rich adaptor protein 1 like	protein-coding
0-2	chr11	13351375	13351874	+	0	NA	intron (NM_001297719, intron 3 of 19)	intron (NM_001297719, intron 3 of 19)	52350	NM_001178	406	Hs.65734	NM_001178	ENSG00000133794	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator like	protein-coding
5.05845-10	chr16	53088572	53089304	+	0	NA	promoter-TSS (NM_025134)	promoter-TSS (NM_025134)	-7	NM_025134	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
0.0305075-57	chr17	55474037	55474536	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	126672	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
12.1968-6	chr1	36320829	36321328	+	0	NA	3' UTR (NM_017629, exon 18 of 18)	3' UTR (NM_017629, exon 18 of 18)	-14331	NM_001317123	26523	Hs.22867	NM_012199	ENSG00000092847	AGO1	EIF2C|EIF2C1|GERP95|Q99|hAgo1	argonaute 1, RISC catalytic component	protein-coding
22.2475-2	chr8	141801219	141801718	+	0	NA	intron (NM_001316342, intron 11 of 32)	intron (NM_001316342, intron 11 of 32)	-155822	NM_001164623	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
1.91114-10	chr13	112170607	112171106	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-77500	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
0.9691-8	chr11	118938104	118938603	+	0	NA	promoter-TSS (NM_001290185)	promoter-TSS (NM_001290185)	-110	NM_001290185	55823	Hs.234282	NM_021729	ENSG00000160695	VPS11	END1|HLD12|PEP5|RNF108|hVPS11	VPS11, CORVET/HOPS core subunit	protein-coding
0.731433	chr16	57148178	57148677	+	0	NA	intron (NM_152727, intron 3 of 15)	LTR33|LTR|ERVL	21972	NM_152727	221184	Hs.339809	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
0.296531-108	chr8	128534485	128534984	+	0	NA	Intergenic	L1ME3D|LINE|L1	-40350	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
0-6	chr18	22212218	22212717	+	0	NA	intron (NR_040033, intron 1 of 2)	intron (NR_040033, intron 1 of 2)	4321	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LINC01915	-	long intergenic non-protein coding RNA 1915	ncRNA
0.783135-22	chr6	118972706	118973205	+	0	NA	promoter-TSS (NM_001042475)	promoter-TSS (NM_001042475)	65	NM_206921	387119	Hs.656959	NM_206921	ENSG00000111860	CEP85L	C6orf204|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
8.9279-3	chr11	72916753	72917252	+	0	NA	Intergenic	L2b|LINE|L2	-12341	NM_176072	5029	Hs.339	NM_002564	ENSG00000175591	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y2	protein-coding
5.05845-13	chr18	5296143	5296642	+	0	NA	promoter-TSS (NM_001243702)	promoter-TSS (NM_001243702)	-198	NM_001143823	7541	Hs.592340	NM_003409	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
0.0305075-40	chr15	27505246	27505745	+	0	NA	intron (NM_033223, intron 3 of 9)	MLT1B|LTR|ERVL-MaLR	-99029	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
0.675262-19	chr17	56326886	56327385	+	0	NA	intron (NM_006151, intron 6 of 12)	CpG-10927	11348	NM_001160102	4025	Hs.234742	NM_006151	ENSG00000167419	LPO	SPO	lactoperoxidase	protein-coding
1.22629-12	chr20	14382162	14382661	+	0	NA	intron (NM_080676, intron 3 of 16)	intron (NM_080676, intron 3 of 16)	-64098	NM_013281	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
0.218195-4	chr1	236772360	236772859	+	0	NA	Intergenic	Intergenic	-4768	NM_018072	55127	Hs.708114	NM_018072	ENSG00000119285	HEATR1	BAP28|UTP10	HEAT repeat containing 1	protein-coding
0.609802-30	chr14	53618849	53619348	+	0	NA	promoter-TSS (NR_110062)	promoter-TSS (NR_110062)	948	NM_001160148	80821	Hs.125525	NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28	DDHD domain containing 1	protein-coding
0.11441-28	chr6	166298249	166298748	+	0	NA	Intergenic	Intergenic	-102541	NR_027284	441177	Hs.708964	NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
2.98432-2	chr11	78652174	78652673	+	0	NA	intron (NM_001098816, intron 6 of 33)	intron (NM_001098816, intron 6 of 33)	-366514	NM_001243251	79731	Hs.503389	NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
2.29885-4	chr19	56061090	56061589	+	0	NA	Intergenic	CpG	-4430	NM_001199824	100130827	Hs.712129	NM_001199824	ENSG00000231274	SBK3	SGK110	SH3 domain binding kinase family member 3	protein-coding
16.3827-2	chr13	108772617	108773116	+	0	NA	Intergenic	LTR9B|LTR|ERV1	94264	NM_002312	3981	Hs.166091	NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
0.291884-20	chr6	111408933	111409432	+	0	NA	exon (NM_018593, exon 1 of 6)	exon (NM_018593, exon 1 of 6)	401	NM_018593	117247	Hs.591327	NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 member 10	protein-coding
19.0658-7	chr11	94509129	94509987	+	0	NA	intron (NM_001301007, intron 1 of 11)	L2|LINE|L2	8050	NM_130847	154810	Hs.503594	NM_130847	ENSG00000166025	AMOTL1	JEAP	angiomotin like 1	protein-coding
8.38632-3	chr5	155238964	155239463	+	0	NA	Intergenic	MER11D|LTR|ERVK	-514554	NM_172244	6444	Hs.387207	NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
1.20331-5	chr17	55923846	55924345	+	0	NA	intron (NM_016070, intron 2 of 4)	SVA_B|Other|Other	3338	NM_016070	51649	Hs.5836	NM_016070	ENSG00000181610	MRPS23	CGI-138|HSPC329|MRP-S23	mitochondrial ribosomal protein S23	protein-coding
1.33122-29	chr9	133030708	133031207	+	0	NA	intron (NM_001291815, intron 1 of 86)	L2b|LINE|L2	2799	NM_001291815	256158	Hs.32194	NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
0.301184-30	chr1	70598477	70598976	+	0	NA	Intergenic	Intergenic	72635	NM_017768	55631	Hs.147836	NM_017768	ENSG00000066557	LRRC40	dJ677H15.1	leucine rich repeat containing 40	protein-coding
0.888424-47	chr2	16938376	16938875	+	0	NA	Intergenic	Intergenic	-91491	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding
0.94744-7	chr17	38474195	38474694	+	0	NA	promoter-TSS (NM_001145302)	promoter-TSS (NM_001145302)	-29	NM_001145302	5914	Hs.654583	NM_000964	ENSG00000131759	RARA	NR1B1|RAR	retinoic acid receptor alpha	protein-coding
0.0436481-16	chr14	54955423	54955922	+	0	NA	promoter-TSS (NM_004124)	promoter-TSS (NM_004124)	72	NM_004124	2764	Hs.151413	NM_004124	ENSG00000197045	GMFB	GMF	glia maturation factor beta	protein-coding
0.33389-2	chr16	28503202	28503701	+	0	NA	promoter-TSS (NM_001286105)	promoter-TSS (NM_001286105)	-48	NM_000086	1201	Hs.534667	NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3, battenin	protein-coding
0.899095-18	chr17	56017647	56018640	+	0	NA	intron (NM_001271875, intron 1 of 10)	L2b|LINE|L2	14541	NM_001271875	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
7.74691-20	chr2	163317904	163318403	+	0	NA	intron (NM_173162, intron 5 of 7)	Charlie13b|DNA|hAT-Charlie	117262	NM_001330271	25801	Hs.377894	NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
0.25028-30	chr2	134735066	134735565	+	0	NA	Intergenic	Intergenic	-149381	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
2.76544-6	chr1	212659752	212660251	+	0	NA	Intergenic	Intergenic	53772	NR_026598	29937	Hs.461787	NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
2.8567	chr10	11479583	11480082	+	0	NA	Intergenic	Intergenic	-93159	NR_126062	414196	Hs.729598	NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
2.97569-3	chr1	222638649	222639148	+	0	NA	Intergenic	CpG	82546	NM_024746	79802	Hs.665660	NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
2.33587-10	chr17	55426841	55427340	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	92716	NM_170721	124540	Hs.658922	NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
0.447935-7	chr22	44759269	44759768	+	0	NA	Intergenic	Intergenic	-50787	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
4.31798-11	chr11	113400140	113400639	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-54388	NM_016574	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
1.87755-6	chr20	60985541	60986040	+	0	NA	3' UTR (NM_080833, exon 14 of 14)	3' UTR (NM_080833, exon 14 of 14)	-3451	NM_031215	81928	Hs.301040	NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
1.46302-2	chr13	88321376	88321875	+	0	NA	intron (NR_033829, intron 1 of 5)	intron (NR_033829, intron 1 of 5)	1593	NR_033829	642345	Hs.508337	NR_033829	ENSG00000228824	MIR4500HG	-	MIR4500 host gene	ncRNA
2.30623-5	chr9	6715377	6715876	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5237	NM_001146696	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
11.6178	chr4	85773100	85773599	+	0	NA	intron (NM_014991, intron 4 of 67)	MER44C|DNA|TcMar-Tigger	114195	NM_014991	23001	Hs.480116	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
0.545314-11	chr21	44395259	44395758	+	0	NA	intron (NM_004571, intron 1 of 10)	CpG	888	NM_001286258	5316	Hs.431043	NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
0.319843-6	chr2	226038579	226039078	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-131498	NM_014689	55619	Hs.46578	NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
3.34419	chr14	102419376	102419875	+	0	NA	Intergenic	MIRb|SINE|MIR	-11240	NM_001376	1778	Hs.614080	NM_001376	ENSG00000197102	DYNC1H1	CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
5.62249-10	chr3	194121447	194121946	+	0	NA	Intergenic	SVA_E|Other|Other	-1701	NM_004488	2814	Hs.73734	NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
2.77366-3	chr3	18792915	18793414	+	0	NA	Intergenic	Intergenic	-306084	NM_001322874	6304	Hs.517717	NM_002971	ENSG00000182568	SATB1	-	SATB homeobox 1	protein-coding
22.2257	chr3	161192405	161192904	+	0	NA	Intergenic	Intergenic	-21942	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
0.0392635-37	chr6	33822208	33822707	+	0	NA	Intergenic	Intergenic	42227	NR_038989	100507584	Hs.547104	NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
4.1005-9	chr4	15656912	15657411	+	0	NA	promoter-TSS (NM_001193534)	promoter-TSS (NM_001193534)	-126	NR_036464	26234	Hs.643433	NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
3.34419-3	chr11	78358955	78359454	+	0	NA	Intergenic	Intergenic	-73295	NM_001243251	79731	Hs.503389	NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
6.36388-9	chr1	169042102	169042601	+	0	NA	intron (NR_104091, intron 1 of 4)	intron (NR_104091, intron 1 of 4)	13892	NR_104091	101978719	Hs.517849	NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
1.20331-13	chr11	86199513	86200012	+	0	NA	intron (NM_001014811, intron 5 of 13)	L2c|LINE|L2	113984	NM_001156474	60494	Hs.144913	NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
7.28158-6	chr18	23669941	23670440	+	0	NA	intron (NM_001308201, intron 1 of 10)	CpG	421	NM_005637	6760	Hs.129261	NM_005637	ENSG00000141380	SS18	SSXT|SYT	SS18, nBAF chromatin remodeling complex subunit	protein-coding
5.27244-9	chr1	200211931	200212430	+	0	NA	Intergenic	Intergenic	130740	NR_040064	554279	Hs.434694	NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
0.123337-27	chr21	26946121	26946620	+	0	NA	promoter-TSS (NR_030784)	promoter-TSS (NR_030784)	78	NR_030784	406947		NR_030784	ENSG00000234883	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
1.14639-8	chr1	171904813	171905312	+	0	NA	intron (NM_015569, intron 2 of 20)	intron (NM_015569, intron 2 of 20)	71730	NR_046845	100874284		NR_046845	ENSG00000233540	DNM3-IT1	-	DNM3 intronic transcript 1	ncRNA
0.457575-9	chr19	47363697	47364196	+	0	NA	Intergenic	CpG	-9694	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 sigma 1 subunit	protein-coding
7.74691-19	chr9	134597500	134597999	+	0	NA	intron (NM_001304275, intron 1 of 23)	intron (NM_001304275, intron 1 of 23)	-12520	NM_198679	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
2.21849	chr12	124457501	124458000	+	0	NA	promoter-TSS (NM_001204298)	promoter-TSS (NM_001204298)	-12	NM_001204298	144348	Hs.524828	NM_152437	ENSG00000179195	ZNF664	ZFOC1|ZNF176	zinc finger protein 664	protein-coding
1.76526-3	chr18	618818	619317	+	0	NA	intron (NM_001318522, intron 2 of 8)	intron (NM_001318522, intron 2 of 8)	2367	NM_199167	27098	Hs.732341	NM_014410	ENSG00000079101	CLUL1	RA337M	clusterin like 1	protein-coding
0.070049-28	chr1	8229764	8230263	+	0	NA	Intergenic	Intergenic	-38719	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
0.579919-4	chr14	77650633	77651132	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	2780	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
10.5061	chr2	20742651	20743150	+	0	NA	Intergenic	Intergenic	49408	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
5.27244-3	chr1	167457966	167458465	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	29632	NM_198053	919	Hs.156445	NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
0.296531-22	chr12	111876218	111876717	+	0	NA	intron (NM_001291424, intron 1 of 6)	L2a|LINE|L2	3801	NM_001291424	10019	Hs.506784	NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
17.4958-3	chr12	120801230	120801729	+	0	NA	intron (NM_002442, intron 5 of 14)	intron (NM_002442, intron 5 of 14)	5504	NM_002442	4440	Hs.158311	NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
4.93495-5	chr7	1595685	1596184	+	0	NA	5' UTR (NM_001097620, exon 1 of 9)	5' UTR (NM_001097620, exon 1 of 9)	132	NM_001097620	202915	Hs.592174	NM_152689	ENSG00000164855	TMEM184A	SDMG1	transmembrane protein 184A	protein-coding
11.4327-2	chrX	47546566	47547065	+	0	NA	Intergenic	Intergenic	-19775	NR_033924	392459	Hs.562045	NR_033924	ENSG00000187893	CXXC1P1	CXorf25|NCRNA00236	CXXC finger protein 1 pseudogene 1	pseudo
15.3165-4	chrY	59019575	59020074	+	0	NA	Intergenic	Intergenic	-80579	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
2.0621-4	chr5	436364	436863	+	0	NA	3' UTR (NM_001242412, exon 11 of 11)	3' UTR (NM_001242412, exon 11 of 11)	6662	NR_126522	116349	Hs.446702	NM_138464	ENSG00000221990	EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
4.81486-4	chr1	202139823	202140322	+	0	NA	intron (NR_002930, intron 4 of 21)	intron (NR_002930, intron 4 of 21)	2893	NR_002930	148713	Hs.523870	NR_002930	ENSG00000243323	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase, receptor type V, pseudogene	pseudo
0.404816-4	chr14	51973777	51974276	+	0	NA	intron (NM_001042481, intron 1 of 14)	intron (NM_001042481, intron 1 of 14)	18187	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
8.26814-17	chr18	60189404	60190392	+	0	NA	promoter-TSS (NM_017742)	promoter-TSS (NM_017742)	-760	NM_017742	54877	Hs.114191	NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
0.296531-62	chr2	48542540	48543448	+	0	NA	intron (NM_002158, intron 1 of 6)	intron (NM_002158, intron 1 of 6)	1199	NM_002158	3344	Hs.468478	NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
11.8177-2	chr5	143844733	143845232	+	0	NA	intron (NM_020768, intron 3 of 3)	intron (NM_020768, intron 3 of 3)	294545	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
2.46417-8	chr6	4021607	4022106	+	0	NA	intron (NM_003913, intron 1 of 14)	CpG	287	NM_003913	8899	Hs.159014	NM_003913	ENSG00000112739	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	pre-mRNA processing factor 4B	protein-coding
1.22053-8	chr22	36781533	36782032	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	2330	NM_002473	4627	Hs.474751	NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
2.07608-2	chr4	175750159	175750658	+	0	NA	promoter-TSS (NM_006529)	promoter-TSS (NM_006529)	58	NM_006529	8001	Hs.413099	NM_006529	ENSG00000145451	GLRA3	-	glycine receptor alpha 3	protein-coding
16.5561-8	chr12	49690296	49691008	+	0	NA	non-coding (NR_120449, exon 5 of 8)	non-coding (NR_120449, exon 5 of 8)	1743	NM_006262	5630	Hs.37044	NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
6.17983-7	chr7	29328739	29329238	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-80402	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
0.47692-11	chr6	35705176	35705675	+	0	NA	promoter-TSS (NR_027117)	promoter-TSS (NR_027117)	616	NM_145028	221481	Hs.533066	NM_145028	ENSG00000157343	ARMC12	C6orf81	armadillo repeat containing 12	protein-coding
2.34331-7	chr1	67399958	67400457	+	0	NA	intron (NM_001077704, intron 1 of 13)	AluJr|SINE|Alu	4281	NM_001077704	57708	Hs.605432	NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
0.172766-17	chr9	115512678	115513177	+	0	NA	promoter-TSS (NM_001012994)	promoter-TSS (NM_001012994)	-207	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
0.634863-13	chr9	33458451	33458950	+	0	NA	Intergenic	Intergenic	9233	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
2.60428	chr12	57023884	57024383	+	0	NA	promoter-TSS (NM_001300905)	promoter-TSS (NM_001300905)	-18	NM_001300905	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
3.63512-3	chr11	61259143	61259642	+	0	NA	TTS (NM_001170753)	TTS (NM_001170753)	10807	NM_001170753	220004	Hs.729003	NM_145017	ENSG00000162148	PPP1R32	C11orf66|IIIG9	protein phosphatase 1 regulatory subunit 32	protein-coding
6.36388-5	chr20	18355663	18356162	+	0	NA	Intergenic	SVA_C|Other|Other	-3781	NR_034167	440757	Hs.120399	NM_001004344	ENSG00000237282	LINC00851	DZANK1-AS1	long intergenic non-protein coding RNA 851	ncRNA
50.716	chr4	113987256	113987755	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	16720	NM_020977	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
10.2228-3	chr7	139283289	139283788	+	0	NA	intron (NM_001113239, intron 11 of 14)	intron (NM_001113239, intron 11 of 14)	74864	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
6.25252	chr1	37706202	37706701	+	0	NA	Intergenic	Intergenic	79287	NR_036217	100422898		NR_036217	ENSG00000264698	MIR4255	-	microRNA 4255	ncRNA
22.815-5	chr2	165791766	165792265	+	0	NA	intron (NM_001199148, intron 6 of 10)	AluJr|SINE|Alu	20020	NM_173512	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
1.70053-5	chr1	221052368	221052867	+	0	NA	promoter-TSS (NM_021958)	promoter-TSS (NM_021958)	-126	NM_021958	3142	Hs.74870	NM_021958	ENSG00000136630	HLX	HB24|HLX1	H2.0 like homeobox	protein-coding
2.20404-6	chr2	39923210	39923709	+	0	NA	intron (NM_152390, intron 1 of 3)	intron (NM_152390, intron 1 of 3)	30424	NM_152390	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
0.660068-3	chr17	42147791	42148290	+	0	NA	promoter-TSS (NM_138387)	promoter-TSS (NM_138387)	-58	NM_138387	92579	Hs.294005	NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
11.986-2	chr18	45534487	45534986	+	0	NA	Intergenic	CpG	-77219	NM_001003652	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
1.52427-15	chr9	115912965	115913464	+	0	NA	promoter-TSS (NM_001860)	promoter-TSS (NM_001860)	-24	NM_001860	1318	Hs.24030	NM_001860	ENSG00000136867	SLC31A2	COPT2|CTR2|hCTR2	solute carrier family 31 member 2	protein-coding
0.00434512-32	chr12	41870709	41871208	+	0	NA	intron (NM_013377, intron 1 of 7)	intron (NM_013377, intron 1 of 7)	39417	NM_013377	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
2.20404-7	chr16	84544892	84545391	+	0	NA	Intergenic	Intergenic	-6853	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
13.6856-2	chr1	109728590	109729089	+	0	NA	promoter-TSS (NM_001284353)	promoter-TSS (NM_001284353)	-332	NM_001284353	57535	Hs.708190	NM_020775	ENSG00000116299	KIAA1324	EIG121	KIAA1324	protein-coding
1.79799-24	chr1	160261011	160261510	+	0	NA	exon (NM_001098398, exon 31 of 33)	exon (NM_001098398, exon 31 of 33)	-6319	NM_002857	5824	Hs.517232	NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
0.287242-3	chrX	91417635	91418134	+	0	NA	intron (NM_001168362, intron 2 of 4)	L1PB1|LINE|L1	327424	NM_001168360	27328	Hs.655673	NM_014522	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
0.520764-6	chr14	104672560	104673059	+	0	NA	Intergenic	Intergenic	67749	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
0.721166-14	chr20	39591532	39592031	+	0	NA	Intergenic	Intergenic	-17620	NM_001318197	100128988	Hs.636443	NM_001318196		LOC100128988	-	uncharacterized LOC100128988	protein-coding
0.132283-8	chr11	88217899	88218398	+	0	NA	Intergenic	L1P4d|LINE|L1	-19596	NR_049724	100873989	Hs.616625	NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
11.7718-4	chr22	27897056	27897555	+	0	NA	Intergenic	Intergenic	190693	NR_134581	100507657	Hs.537371	NR_134581	ENSG00000226741	LOC100507657	-	uncharacterized LOC100507657	ncRNA
7.87812-10	chr1	193073996	193074870	+	0	NA	promoter-TSS (NM_001319291)	promoter-TSS (NM_001319291)	-19	NM_001319291	51022	Hs.458283	NM_016066	ENSG00000023572	GLRX2	CGI-133|GRX2	glutaredoxin 2	protein-coding
3.93619-13	chr17	33914086	33914585	+	0	NA	promoter-TSS (NM_001282)	promoter-TSS (NM_001282)	53	NM_001030006	163	Hs.514819	NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 beta 1 subunit	protein-coding
1.89096-13	chr3	51893181	51893680	+	0	NA	Intergenic	SVA_D|Other|Other	-2215	NM_203424	389123	Hs.412294	NM_203424	ENSG00000184345	IQCF2	-	IQ motif containing F2	protein-coding
15.7025-2	chr21	45440564	45441063	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	8607	NM_003274	7109	Hs.126221	NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
30.2182	chr12	101151841	101152340	+	0	NA	Intergenic	Intergenic	-36284	NM_178826	121601	Hs.58785	NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
9.87163-10	chr1	64667471	64667970	+	0	NA	Intergenic	SVA_E|Other|Other	-1581	NM_152489	148581	Hs.388746	NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U (putative)	protein-coding
0.467237-18	chr5	150537857	150538356	+	0	NA	promoter-TSS (NM_001155)	promoter-TSS (NM_001155)	-663	NM_001155	309	Hs.412117	NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68	annexin A6	protein-coding
10.8355-4	chr18	39294714	39295213	+	0	NA	Intergenic	Intergenic	-194402	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
18.9279-5	chr14	26751122	26751621	+	0	NA	Intergenic	L1PA11|LINE|L1	315589	NM_006491	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
3.5164-2	chr10	15901739	15902238	+	0	NA	intron (NM_024948, intron 1 of 14)	intron (NM_024948, intron 1 of 14)	544	NM_024948	80013	Hs.158870	NM_024948	ENSG00000148481	FAM188A	C10orf97|CARP|DERP5|MST126|MSTP126|my042	family with sequence similarity 188 member A	protein-coding
0.268721-52	chr20	60794014	60794513	+	0	NA	intron (NM_007232, intron 1 of 2)	CpG	1060	NM_007232	11255	Hs.251399	NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
0.777937-17	chrX	17675792	17676291	+	0	NA	intron (NM_001291868, intron 1 of 7)	intron (NM_001291868, intron 1 of 7)	22628	NM_001291868	4810	Hs.201623	NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
4.98941-7	chr17	4047099	4047598	+	0	NA	intron (NM_144611, intron 1 of 3)	CpG	433	NM_001254755	124936	Hs.513871	NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
1.26679	chr6	159026163	159026662	+	0	NA	intron (NM_020823, intron 7 of 16)	intron (NM_020823, intron 7 of 16)	-4327	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
5.76754-6	chr16	74700372	74700871	+	0	NA	intron (NM_018124, intron 1 of 12)	CpG	158	NM_018124	55159	Hs.567525	NM_018124	ENSG00000168411	RFWD3	RNF201	ring finger and WD repeat domain 3	protein-coding
1.38466-9	chr5	77656936	77657435	+	0	NA	promoter-TSS (NR_105014)	promoter-TSS (NR_105014)	-820	NR_105014	728769	Hs.586193	NR_105014	ENSG00000245556	SCAMP1-AS1	-	SCAMP1 antisense RNA 1	ncRNA
4.42493-18	chr4	152312476	152312975	+	0	NA	Intergenic	SVA_E|Other|Other	-17673	NM_001109977	729830	Hs.633810	NM_001109977	ENSG00000164142	FAM160A1	-	family with sequence similarity 160 member A1	protein-coding
4.68521	chr1	9900163	9900662	+	0	NA	Intergenic	Intergenic	-15828	NM_001009566	22883	Hs.29665	NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
0.241089-23	chr3	118360327	118360826	+	0	NA	promoter-TSS (NR_135573)	promoter-TSS (NR_135573)	-39	NR_135573	101926968	Hs.518185	NR_135573		LOC101926968	-	uncharacterized LOC101926968	ncRNA
4.1005-12	chr8	126010343	126010842	+	0	NA	promoter-TSS (NM_003129)	promoter-TSS (NM_003129)	-128	NM_003129	6713	Hs.71465	NM_003129	ENSG00000104549	SQLE	-	squalene epoxidase	protein-coding
0.296531-74	chr6	52861261	52861760	+	0	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-1332	NM_001512	2941	Hs.485557	NM_001512	ENSG00000170899	GSTA4	GSTA4-4|GTA4	glutathione S-transferase alpha 4	protein-coding
9.46922-6	chrX	20079258	20079757	+	0	NA	intron (NM_152780, intron 3 of 15)	intron (NM_152780, intron 3 of 15)	-44202	NR_037414	100500809		NR_037414	ENSG00000264566	MIR23C	hsa-mir-23c|mir-23c	microRNA 23c	ncRNA
1.72631-19	chr12	75972748	75973737	+	0	NA	Intergenic	Intergenic	-67824	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
0.385789-21	chr16	14415278	14415777	+	0	NA	intron (NR_132983, intron 1 of 1)	intron (NR_132983, intron 1 of 1)	12385	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a|mir-365a	microRNA 365a	ncRNA
3.59519-11	chr12	3826747	3827246	+	0	NA	intron (NM_032680, intron 2 of 10)	intron (NM_032680, intron 2 of 10)	35370	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
0.888424-31	chr15	59730284	59730783	+	0	NA	intron (NM_152450, intron 1 of 8)	CpG	161	NM_152450	145773	Hs.531168	NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
9.24453-3	chr2	232328322	232328821	+	0	NA	intron (NM_005381, intron 1 of 13)	CpG	634	NM_005381	4691	Hs.79110	NM_005381	ENSG00000115053	NCL	C23	nucleolin	protein-coding
9.70616-13	chr2	108077662	108078161	+	0	NA	Intergenic	MER21C|LTR|ERVL	-111930	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
0.241089-36	chr3	57541496	57542281	+	0	NA	promoter-TSS (NM_001322177)	promoter-TSS (NM_001322177)	-86	NM_001322177	201626	Hs.572993	NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
3.78824-6	chr18	13563402	13563901	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	-47462	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
0.0305075-33	chr14	85597871	85598370	+	0	NA	Intergenic	L1MA10|LINE|L1	-255499	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
0.181814-36	chr9	139886923	139887422	+	0	NA	intron (NR_138076, intron 2 of 5)	CpG-27411	302	NR_138074	286257	Hs.409582	NM_183241	ENSG00000148362	C9orf142	PAXX|XLS	chromosome 9 open reading frame 142	protein-coding
17.0774-4	chr13	98865963	98866462	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	5434	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
1.57391-14	chr19	572140	572639	+	0	NA	promoter-TSS (NM_001322243)	promoter-TSS (NM_001322243)	-65	NM_001322243	682	Hs.501293	NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|OK|TCSF	basigin (Ok blood group)	protein-coding
2.64401-12	chr6	37745011	37745510	+	0	NA	Intergenic	Intergenic	-42047	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
0.746879-8	chr7	108082486	108082985	+	0	NA	intron (NM_005010, intron 1 of 27)	intron (NM_005010, intron 1 of 27)	14106	NM_001193583	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
8.79426-15	chr1	113265590	113266089	+	0	NA	intron (NM_182759, intron 3 of 4)	intron (NM_182759, intron 3 of 4)	2650	NM_001004440	284467	Hs.439116	NM_182759	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 member A3, C-C motif chemokine like	protein-coding
4.90797	chr1	11494552	11495051	+	0	NA	Intergenic	Intergenic	-44494	NM_020780	57540	Hs.202355	NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
1.88425-5	chr22	46362354	46362853	+	0	NA	intron (NM_058238, intron 1 of 3)	intron (NM_058238, intron 1 of 3)	10405	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
15.0585-4	chr6	23880041	23880540	+	0	NA	Intergenic	Intergenic	-246124	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
12.7737-2	chr2	28731094	28731593	+	0	NA	intron (NM_153021, intron 1 of 57)	intron (NM_153021, intron 1 of 57)	12405	NM_001170585	151056	Hs.444933	NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
7.74691	chr16	58549154	58549653	+	0	NA	promoter-TSS (NM_001160305)	promoter-TSS (NM_001160305)	20	NR_134583	79918	Hs.731691	NM_024860	ENSG00000103037	SETD6	-	SET domain containing 6	protein-coding
2.71646-12	chr7	152456848	152457347	+	0	NA	intron (NR_073000, intron 1 of 10)	CpG	263	NM_020445	57180	Hs.647117	NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	ARP3 actin related protein 3 homolog B	protein-coding
2.79841-5	chrX	139846471	139846970	+	0	NA	intron (NR_104228, intron 3 of 3)	CpG	20003	NM_004065	1038	Hs.446675	NM_004065	ENSG00000184258	CDR1	CDR|CDR34|CDR62A	cerebellar degeneration related protein 1	protein-coding
17.4473-4	chr5	9898392	9898891	+	0	NA	intron (NR_027112, intron 2 of 12)	LTR82B|LTR|ERVL	5295	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LINC02112	-	long intergenic non-protein coding RNA 2112	ncRNA
2.58061-15	chr4	30929008	30929507	+	0	NA	intron (NM_001173523, intron 2 of 2)	SVA_D|Other|Other	207220	NM_001173523	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
0.655015-6	chr6	31831440	31831939	+	0	NA	promoter-TSS (NM_000434).4	promoter-TSS (NM_000434).4	-980	NM_000434	4758	Hs.520037	NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
5.43634-5	chr10	75449906	75450405	+	0	NA	intron (NM_001144000, intron 4 of 7)	SVA_D|Other|Other	7399	NM_001144000	729092	Hs.651147	NM_001144000	ENSG00000172650	AGAP5	CTGLF2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 5	protein-coding
1.31356-10	chr3	132441552	132442051	+	0	NA	promoter-TSS (NR_037804)	promoter-TSS (NR_037804)	-498	NM_153240	27031	Hs.511991	NM_153240	ENSG00000113971	NPHP3	CFAP31|MKS7|NPH3|RHPD|RHPD1|SLSN3	nephrocystin 3	protein-coding
15.7675-3	chr6	35502198	35502697	+	0	NA	Intergenic	L2|LINE|L2	-21732	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
1.31356-6	chr20	58395592	58396091	+	0	NA	intron (NM_001199505, intron 8 of 12)	intron (NM_001199505, intron 8 of 12)	99576	NM_183246	116154	Hs.473218	NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
3.53596-15	chr7	34796283	34796782	+	0	NA	intron (NR_015356, intron 2 of 4)	MIRb|SINE|MIR	1352	NR_033664	404744	Hs.487951	NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
4.40093-6	chr6	57492693	57493192	+	0	NA	intron (NM_000947, intron 12 of 14)	intron (NM_000947, intron 12 of 14)	238012	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
1.40862-3	chrX	10141484	10141983	+	0	NA	intron (NM_001256944, intron 2 of 10)	MER5A1|DNA|hAT-Charlie	16748	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
0.296531-123	chr9_gl000199_random	108435	108934	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
12.9757	chr15	92416103	92416602	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	18822	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
8.35647-2	chr4	8913134	8913828	+	0	NA	Intergenic	Intergenic	-37996	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	pseudo
0.0612309-4	chr7	17337916	17338415	+	0	NA	promoter-TSS (NM_001621)	promoter-TSS (NM_001621)	-111	NM_001621	196	Hs.171189	NM_001621	ENSG00000106546	AHR	bHLHe76	aryl hydrocarbon receptor	protein-coding
4.31798-18	chr4	139757257	139757756	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	176294	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
13.0892	chr16	84552518	84553017	+	0	NA	Intergenic	Intergenic	-14479	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
5.25784-2	chr17	6938995	6939494	+	0	NA	promoter-TSS (NM_201566)	promoter-TSS (NM_201566)	-150	NM_201566	201232	Hs.448010	NM_201566	ENSG00000174327	SLC16A13	MCT13	solute carrier family 16 member 13	protein-coding
3.63512-20	chr16	58034487	58034986	+	0	NA	promoter-TSS (NM_001204911)	promoter-TSS (NM_001204911)	-541	NM_001204911	79650	Hs.408702	NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
3.63512-26	chr3	138493181	138493680	+	0	NA	Intergenic	Intergenic	-15229	NM_006219	5291	Hs.239818	NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
0.0524306-23	chr7	19728633	19729132	+	0	NA	Intergenic	L1PA2|LINE|L1	16177	NR_036101	100422967		NR_036101	ENSG00000265932	MIR3146	mir-3146	microRNA 3146	ncRNA
41.1126	chr5	27448146	27448645	+	0	NA	Intergenic	L1M2|LINE|L1	-24004	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
19.393	chr8	115395898	115396397	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-946905	NM_198123	114788	Hs.91381	NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
4.24812-11	chr18	75570225	75570724	+	0	NA	Intergenic	Intergenic	135209	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
13.0103-12	chr6	111873145	111873644	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	15169	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
0.132283-10	chr9	127618166	127618665	+	0	NA	intron (NM_001276376, intron 3 of 7)	intron (NM_001276376, intron 3 of 7)	2719	NM_001276374	401551	Hs.343383	NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
22.2475	chr13	98856133	98856632	+	0	NA	intron (NM_005766, intron 1 of 26)	7SK|RNA|RNA	-4396	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
0.736576-20	chr12	89723	90222	+	0	NA	intron (NR_130745, intron 9 of 10)	intron (NR_130745, intron 9 of 10)	16247	NR_130745	100288778	Hs.459573	NR_130745	ENSG00000226210	LOC100288778	-	WAS protein family homolog 1 pseudogene	pseudo
0.680339-20	chr1	156828531	156829030	+	0	NA	promoter-TSS (NM_014215)	promoter-TSS (NM_014215)	-68	NM_014215	3645	Hs.248138	NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
0.736576-38	chr9	38360662	38361161	+	0	NA	Intergenic	L2b|LINE|L2	-31750	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
2.5649-16	chr8	30890874	30891373	+	0	NA	promoter-TSS (NM_001323311)	promoter-TSS (NM_001323311)	108	NM_001015508	29942	Hs.373778	NM_013357	ENSG00000172733	PURG	PURG-A|PURG-B	purine rich element binding protein G	protein-coding
0.231917-11	chr17	27917917	27918416	+	0	NA	Intergenic	CpG	-1556	NM_014030	28964	Hs.514051	NM_014030	ENSG00000108262	GIT1	-	GIT ArfGAP 1	protein-coding
16.8403-2	chr4	179085774	179086273	+	0	NA	Intergenic	L1M5|LINE|L1	-256933	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
3.00162-7	chr4	183859184	183859683	+	0	NA	Intergenic	Intergenic	-20803	NM_001012732	1635	Hs.183850	NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
1.70053-17	chr19	51549963	51550462	+	0	NA	Intergenic	Intergenic	-12064	NM_145895	43849	Hs.411572	NM_019598	ENSG00000186474	KLK12	KLK-L5|KLKL5	kallikrein related peptidase 12	protein-coding
3.74688-12	chr14	106162670	106163169	+	0	NA	Intergenic	Intergenic	-23775	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
0.783135-21	chr11	34126874	34127373	+	0	NA	promoter-TSS (NM_001144030)	promoter-TSS (NM_001144030)	12	NM_001144030	55226	Hs.577281	NM_024662	ENSG00000135372	NAT10	ALP|NET43	N-acetyltransferase 10	protein-coding
2.29148-18	chr19	51297712	51298211	+	0	NA	intron (NM_033068, intron 9 of 10)	intron (NM_033068, intron 9 of 10)	4289	NM_033068	93650	Hs.293394	NM_033068	ENSG00000142513	ACPT	-	acid phosphatase, testicular	protein-coding
11.5243-3	chr18	12396347	12396846	+	0	NA	Intergenic	MamRep1527|LTR|LTR	-11299	NM_001142405	10650	Hs.514718	NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
2.54145-8	chr8	38688140	38688639	+	0	NA	intron (NM_001122824, intron 3 of 10)	intron (NM_001122824, intron 3 of 10)	43667	NM_006283	6867	Hs.279245	NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
0.731433-12	chr19	47880380	47880879	+	0	NA	intron (NM_014681, intron 13 of 16)	L2b|LINE|L2	28091	NM_014681	9704	Hs.151706	NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DExH-box helicase 34	protein-coding
7.85156-4	chr1	160621892	160622391	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5040	NM_001330754	6504	Hs.523660	NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
3.32547-9	chr1	3635688	3636187	+	0	NA	intron (NM_001126242, intron 2 of 10)	intron (NM_001126242, intron 2 of 10)	21327	NM_001204192	7161	Hs.192132	NM_005427	ENSG00000078900	TP73	P73	tumor protein p73	protein-coding
1.24939-11	chr9	128991057	128991556	+	0	NA	Intergenic	Intergenic	46888	NR_121584	101929116	Hs.382124	NR_121584	ENSG00000228392	LOC101929116	-	uncharacterized LOC101929116	ncRNA
0.75204-8	chr1	167683931	167684430	+	0	NA	Intergenic	Intergenic	-7007	NM_003953	9019	Hs.493919	NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
0.609802	chr11	57193410	57193909	+	0	NA	5' UTR (NM_014096, exon 3 of 14)	5' UTR (NM_014096, exon 3 of 14)	901	NM_014096	29015	Hs.99962	NM_014096	ENSG00000134802	SLC43A3	EEG1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
2.0204-11	chr17	42976805	42977304	+	0	NA	promoter-TSS (NM_001258353)	promoter-TSS (NM_001258353)	-26	NM_213607	388389	Hs.743398	NM_213607	ENSG00000167131	CCDC103	CILD17|PR46b|SMH	coiled-coil domain containing 103	protein-coding
3.06273-7	chr1	102216998	102217497	+	0	NA	Intergenic	L1MA9|LINE|L1	95389	NR_110212	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
0.254883-15	chr12	10874494	10874993	+	0	NA	intron (NM_001145426, intron 1 of 8)	intron (NM_001145426, intron 1 of 8)	1210	NM_001145426	8531	Hs.221889	NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
2.26945-2	chr2	26785544	26786043	+	0	NA	intron (NM_001105519, intron 1 of 3)	intron (NM_001105519, intron 1 of 3)	366	NM_001322426	339778	Hs.407083	NM_001105519	ENSG00000173557	C2orf70	-	chromosome 2 open reading frame 70	protein-coding
1.33122-3	chr8	55047542	55048041	+	0	NA	promoter-TSS (NM_014175)	promoter-TSS (NM_014175)	10	NM_014175	29088	Hs.18349	NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
1.25518-2	chr14	57856945	57857444	+	0	NA	promoter-TSS (NM_001011713)	promoter-TSS (NM_001011713)	-77	NM_001011713	122830	Hs.165465	NM_001011713	ENSG00000139977	NAA30	C14orf35|MAK3|Mak3p|NAT12|NAT12P	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding
4.37707-11	chr7	102329797	102330296	+	0	NA	Intergenic	CpG	-17870	NM_032959	246721	Hs.610255	NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
7.61954-27	chr8	66754386	66754885	+	0	NA	promoter-TSS (NM_001242318)	promoter-TSS (NM_001242318)	-666	NM_001242318	5150	Hs.527119	NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
1.22629-10	chr10	75639341	75639840	+	0	NA	Intergenic	Intergenic	-5241	NM_172169	818	Hs.523045	NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG	calcium/calmodulin dependent protein kinase II gamma	protein-coding
9.46922-11	chr14	74684263	74684762	+	0	NA	Intergenic	CpG	-21663	NM_182894	338917	Hs.449771	NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
0.371573-10	chr6	41149734	41150233	+	0	NA	Intergenic	Intergenic	18942	NM_024807	79865	Hs.164797	NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
5.43634-2	chr17	216559	217058	+	0	NA	Intergenic	L1MEg|LINE|L1	-14175	NM_006987	9501	Hs.651925	NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A-like (without C2 domains)	protein-coding
16.1618-5	chr14	46416883	46417382	+	0	NA	Intergenic	Intergenic	-116230	NR_102702	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
0.69051-6	chr7	39619935	39620434	+	0	NA	intron (NM_001282446, intron 2 of 2)	intron (NM_001282446, intron 2 of 2)	14209	NM_001282446	57002	Hs.72168	NM_020192	ENSG00000241127	YAE1D1	C7orf36|GK003	Yae1 domain containing 1	protein-coding
0.530567-17	chr7	148470349	148470848	+	0	NA	intron (NM_003592, intron 9 of 21)	intron (NM_003592, intron 9 of 21)	74665	NM_003592	8454	Hs.146806	NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
8.79426-2	chr6	17393535	17394034	+	0	NA	promoter-TSS (NM_006366)	promoter-TSS (NM_006366)	48	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
2.29148-28	chr19	12511861	12512360	+	0	NA	promoter-TSS (NM_001080821)	promoter-TSS (NM_001080821)	-22	NM_001080821	90576	Hs.546637	NM_203381	ENSG00000196466	ZNF799	HIT-40|ZNF842	zinc finger protein 799	protein-coding
16.7778-2	chr12	12761315	12761814	+	0	NA	Intergenic	Intergenic	-3203	NM_001310	1389	Hs.591156	NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
0.277972	chr15	84910638	84911137	+	0	NA	intron (NM_001267536, intron 7 of 8)	intron (NM_001267536, intron 7 of 8)	6362	NM_001267536	643707	Hs.498345	NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family-like 4	protein-coding
3.61511	chr7	7758799	7759298	+	0	NA	promoter-TSS (NM_002947)	promoter-TSS (NM_002947)	-810	NM_002947	6119	Hs.487540	NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
0.254883-16	chr2	11722824	11723323	+	0	NA	intron (NM_014668, intron 7 of 32)	intron (NM_014668, intron 7 of 32)	40222	NM_033090	9687	Hs.467733	NM_014668	ENSG00000196208	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
0.419142-10	chr16	66864279	66864778	+	0	NA	intron (NM_001018159, intron 1 of 20)	CpG	351	NM_001286500	8883	Hs.460978	NM_003905	ENSG00000159593	NAE1	A-116A10.1|APPBP1|HPP1|ula-1	NEDD8 activating enzyme E1 subunit 1	protein-coding
0.11441-25	chrX	122993483	122993982	+	0	NA	promoter-TSS (NM_001167)	promoter-TSS (NM_001167)	70	NM_001204401	331	Hs.356076	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
12.5571-3	chr2	150741819	150742318	+	0	NA	Intergenic	Intergenic	-297738	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria and homocystinuria, cblD type	protein-coding
0.90444-4	chr17	56004604	56005103	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	-24103	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
5.08638	chr1	714008	714507	+	0	NA	promoter-TSS (NR_033908)	promoter-TSS (NR_033908)	-189	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
1.17475-3	chr2	100937735	100938234	+	0	NA	exon (NM_198461, exon 1 of 12)	exon (NM_198461, exon 1 of 12)	1211	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
2.24754-3	chr14	96968421	96968920	+	0	NA	promoter-TSS (NM_001252006)	promoter-TSS (NM_001252006)	-7	NR_122121	730202	Hs.647565	NR_122121		LOC730202	-	uncharacterized LOC730202	ncRNA
2.13959-15	chr12	113536128	113536627	+	0	NA	TTS (NM_004416)	TTS (NM_004416)	37027	NM_001301202	8437	Hs.528693	NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
1.69411-6	chr3	14165612	14166111	+	0	NA	promoter-TSS (NM_024334)	promoter-TSS (NM_024334)	510	NM_001098502	131474	Hs.517815	NM_144636	ENSG00000163528	CHCHD4	MIA40|TIMM40	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding
5.0724-17	chr16	79205685	79206184	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	428688	NM_001031804	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
26.2709-3	chr6	97107198	97107697	+	0	NA	Intergenic	L1PA16|LINE|L1	96446	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
0.222764-14	chr3	150480886	150481385	+	0	NA	5' UTR (NM_005067, exon 1 of 2)	5' UTR (NM_005067, exon 1 of 2)	128	NM_005067	6478	Hs.477959	NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
4.7237-9	chr11	64684673	64685172	+	0	NA	promoter-TSS (NM_015104)	promoter-TSS (NM_015104)	-200	NM_015104	23130	Hs.370671	NM_015104	ENSG00000110046	ATG2A	-	autophagy related 2A	protein-coding
21.8376-4	chr9	31730338	31730837	+	0	NA	Intergenic	Intergenic	-349099	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
51.6052	chr4	19850516	19851015	+	0	NA	Intergenic	Intergenic	-402763	NM_001289135	9353	Hs.29802	NM_004787	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit guidance ligand 2	protein-coding
8.76148-6	chr22	50743325	50743824	+	0	NA	intron (NM_012401, intron 1 of 36)	intron (NM_012401, intron 1 of 36)	2427	NM_012401	23654	Hs.3989	NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding
5.0307-6	chr15	47676554	47677053	+	0	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	200400	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
0.8302-6	chrX	10124606	10125105	+	0	NA	promoter-TSS (NM_001256944)	promoter-TSS (NM_001256944)	-130	NM_001830	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
4.38899-5	chr8	41435386	41435885	+	0	NA	promoter-TSS (NM_178819)	promoter-TSS (NM_178819)	-72	NM_178819	137964	Hs.355753	NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
3.75718-8	chr7	36192464	36192963	+	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	-123	NM_030636	80820	Hs.487994	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
2.35824-6	chr22	51061327	51061826	+	0	NA	3' UTR (NM_000487, exon 8 of 8)	3' UTR (NM_000487, exon 8 of 8)	5025	NM_001085426	410	Hs.88251	NM_000487	ENSG00000100299	ARSA	MLD	arylsulfatase A	protein-coding
7.39929-2	chr16	2093202	2093701	+	0	NA	intron (NM_001318193, intron 3 of 4)	intron (NM_001318193, intron 3 of 4)	4419	NM_002528	4913	Hs.66196	NM_002528	ENSG00000065057	NTHL1	FAP3|NTH1|OCTS3|hNTH1	nth like DNA glycosylase 1	protein-coding
2.47184-13	chr8	135843699	135844198	+	0	NA	Intergenic	CpG	-6364	NR_126028	552853	Hs.575612	NR_126028	ENSG00000253433	NCRNA00250	C8orf24	non-protein coding RNA 250	ncRNA
0.996329-27	chr14	28526517	28527016	+	0	NA	Intergenic	Intergenic	-424282	NR_130461	100422830		NR_130461	ENSG00000264657	MIR3171	-	microRNA 3171	ncRNA
1.18045-3	chr6	149349880	149350379	+	0	NA	intron (NR_134599, intron 1 of 1)	intron (NR_134599, intron 1 of 1)	3668	NR_134599	105378047	Hs.659484	NR_134599		LOC105378047	-	uncharacterized LOC105378047	ncRNA
2.60428-2	chr5	6719473	6719972	+	0	NA	intron (NM_006999, intron 1 of 12)	intron (NM_006999, intron 1 of 12)	5004	NM_006999	11044	Hs.481542	NM_006999	ENSG00000112941	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	poly(A) RNA polymerase D7, non-canonical	protein-coding
15.8336-2	chr20	400135	400634	+	0	NA	intron (NM_001323956, intron 6 of 10)	CpG	11690	NM_006462	10616	Hs.29546	NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
0.0744648-23	chr14	104073367	104073866	+	0	NA	Intergenic	Intergenic	-21909	NM_182923	3831	Hs.20107	NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
5.34617-8	chr2	121176531	121177030	+	0	NA	Intergenic	Intergenic	47145	NR_027181	84931	Hs.334519	NM_032845	ENSG00000280409	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
1.29596-22	chr4	56674244	56674743	+	0	NA	Intergenic	Intergenic	-11744	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
0.109954-12	chr7	1452351	1452850	+	0	NA	Intergenic	CpG	46509	NM_182924	79778	Hs.376617	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
1.19758-3	chr8	125738983	125739482	+	0	NA	intron (NM_014751, intron 1 of 13)	intron (NM_014751, intron 1 of 13)	1516	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
2.48721-3	chr1	229707937	229708436	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-13744	NM_012089	23456	Hs.17614	NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	ATP binding cassette subfamily B member 10	protein-coding
0.655015-11	chr21	34914291	34914790	+	0	NA	promoter-TSS (NM_001291412)	promoter-TSS (NM_001291412)	-76	NM_000819	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein-coding
15.7675	chr8	133918256	133918755	+	0	NA	intron (NM_003235, intron 16 of 47)	intron (NM_003235, intron 16 of 47)	39300	NM_003235	7038	Hs.654591	NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
16.0906-3	chr21	31475072	31475571	+	0	NA	Intergenic	Intergenic	63650	NM_012131	26285	Hs.258589	NM_012131	ENSG00000156282	CLDN17	-	claudin 17	protein-coding
2.11125-7	chr17	66243412	66244283	+	0	NA	promoter-TSS (NM_001289056)	promoter-TSS (NM_001289056)	132	NM_001346474	51321	Hs.293560	NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
0.856568-4	chr6	170747361	170747860	+	0	NA	Intergenic	Intergenic	107761	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
0.716041-15	chr9	138628937	138629436	+	0	NA	intron (NM_020822, intron 2 of 30)	intron (NM_020822, intron 2 of 30)	35155	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
7.16699-6	chr1	207627393	207627892	+	0	NA	promoter-TSS (NM_001877)	promoter-TSS (NM_001877)	-3	NM_001877	1380	Hs.445757	NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
7.47147-9	chr2	171179053	171179552	+	0	NA	intron (NM_001083615, intron 7 of 33)	intron (NM_001083615, intron 7 of 33)	28151	NR_110576	101929753	Hs.534101	NR_110576		LOC101929753	-	uncharacterized LOC101929753	ncRNA
15.1145-2	chr3	31238367	31238866	+	0	NA	Intergenic	Intergenic	-35337	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
5.00313-5	chr5	100121666	100122165	+	0	NA	Intergenic	SVA_A|Other|Other	30354	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
1.56767-8	chr18	41027208	41027707	+	0	NA	Intergenic	L1P4b|LINE|L1	-169842	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding
0.0833099-7	chr20	936953	937452	+	0	NA	Intergenic	Intergenic	-40225	NM_001322809	51378	Hs.278973	NM_015985	ENSG00000101280	ANGPT4	ANG3|ANG4	angiopoietin 4	protein-coding
0.872467-10	chr7	125415288	125415787	+	0	NA	Intergenic	Intergenic	-511192	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
1.62412-13	chr20	17040065	17040564	+	0	NA	Intergenic	Intergenic	-166438	NM_001201528	5126	Hs.315186	NM_002594	ENSG00000125851	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
0.540393-41	chr7	15726165	15726664	+	0	NA	promoter-TSS (NM_005924)	promoter-TSS (NM_005924)	-106	NM_005924	4223	Hs.170355	NM_005924	ENSG00000106511	MEOX2	GAX|MOX2	mesenchyme homeobox 2	protein-coding
1.29011-10	chr9	130730203	130730702	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	12360	NM_001035254	399665	Hs.535972	NM_203305	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102 member A	protein-coding
3.30683-15	chr22	19842161	19842660	+	0	NA	promoter-TSS (NM_053004)	promoter-TSS (NM_053004)	-39	NM_024627	79680	Hs.105642	NM_024627	ENSG00000215012	C22orf29	BOP	chromosome 22 open reading frame 29	protein-coding
0.11441-12	chr9	138870644	138871143	+	0	NA	Intergenic	Intergenic	-17667	NM_016172	10422	Hs.9194	NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
3.30683-10	chr12	123347317	123347816	+	0	NA	TTS (NM_003959)	TTS (NM_003959)	27581	NM_001303097	9026	Hs.524815	NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
5.76754-8	chr7	2720420	2720919	+	0	NA	intron (NM_133463, intron 1 of 6)	intron (NM_133463, intron 1 of 6)	1513	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
4.14539-6	chr18	77336073	77336572	+	0	NA	Intergenic	Intergenic	103423	NR_136643	284241		NR_136643	ENSG00000178412	LOC284241	-	uncharacterized LOC284241	ncRNA
4.78862-11	chr8	142179085	142179584	+	0	NA	intron (NM_014957, intron 13 of 22)	intron (NM_014957, intron 13 of 22)	40614	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
4.27128-7	chr4	25250373	25250872	+	0	NA	intron (NR_144633, intron 1 of 9)	SVA_B|Other|Other	14969	NM_018323	55300	Hs.191701	NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
1.67491-19	chr18	54126016	54126515	+	0	NA	Intergenic	Intergenic	179655	NM_004786	9352	Hs.114412	NM_004786	ENSG00000091164	TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin like 1	protein-coding
9.1364-6	chr9	102668106	102668605	+	0	NA	promoter-TSS (NM_017919)	promoter-TSS (NM_017919)	528	NR_038853	441461	Hs.163155	NR_038853	ENSG00000255145	STX17-AS1	-	STX17 antisense RNA 1	ncRNA
1.78486-12	chr7	141675903	141676402	+	0	NA	Intergenic	Intergenic	-2579	NM_176817	5726	Hs.647085	NM_176817	ENSG00000257138	TAS2R38	PTC|T2R38|T2R61	taste 2 receptor member 38	protein-coding
0.296531-23	chr17	2304294	2304793	+	0	NA	promoter-TSS (NM_020310)	promoter-TSS (NM_020310)	-285	NM_020310	4335	Hs.626579	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
0.716041-12	chr3	106926856	106927355	+	0	NA	intron (NR_028303, intron 1 of 3)	intron (NR_028303, intron 1 of 3)	32380	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
0.0568285-16	chr12	49488093	49488592	+	0	NA	5' UTR (NM_021044, exon 1 of 3)	5' UTR (NM_021044, exon 1 of 3)	260	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
0.231917-32	chr2	10554054	10554553	+	0	NA	intron (NM_134421, intron 3 of 5)	intron (NM_134421, intron 3 of 5)	32672	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
1.28427-11	chr1	192189561	192190060	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	62218	NM_130782	64407	Hs.440890	NM_130782	ENSG00000150681	RGS18	RGS13	regulator of G-protein signaling 18	protein-coding
2.51037	chr5	137910933	137911717	+	0	NA	promoter-TSS (NM_004134)	promoter-TSS (NM_004134)	-7	NM_004134	3313	Hs.184233	NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
22.3433	chr14	76812995	76813494	+	0	NA	Intergenic	Intergenic	-24446	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
0.609802-18	chr22	38577677	38578176	+	0	NA	promoter-TSS (NM_001004426)	promoter-TSS (NM_001004426)	-90	NM_001199562	8398	Hs.170479	NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
7.47147-5	chr16	56485355	56485854	+	0	NA	promoter-TSS (NM_007006)	promoter-TSS (NM_007006)	168	NM_001324361	55239	Hs.231883	NM_018233	ENSG00000087263	OGFOD1	TPA1	2-oxoglutarate and iron dependent oxygenase domain containing 1	protein-coding
19.8716-4	chr18	55416056	55416555	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	54022	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
0.888424-40	chr11	44014267	44014766	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	50410	NM_001145033	387763	Hs.530443	NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
0.245682-17	chr1	16399124	16399623	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	754	NM_182623	348487	Hs.126825	NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
3.55561-7	chr20	33680396	33680895	+	0	NA	promoter-TSS (NM_199368)	promoter-TSS (NM_199368)	-27	NM_015638	26133	Hs.168073	NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
8.56985-11	chr18	30018136	30018635	+	0	NA	intron (NM_022751, intron 1 of 5)	intron (NM_022751, intron 1 of 5)	32062	NM_001242409	64762	Hs.444314	NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding
3.63512-8	chr6	21200268	21201130	+	0	NA	intron (NM_017774, intron 14 of 15)	intron (NM_017774, intron 14 of 15)	311424	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
0.414361-26	chr1	232362026	232362525	+	0	NA	Intergenic	Intergenic	289079	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding
0.352691-10	chr2	21638028	21638527	+	0	NA	Intergenic	Intergenic	291419	NM_001306137	100129278	Hs.651096	NM_001306137	ENSG00000218819	TDRD15	-	tudor domain containing 15	protein-coding
1.22053-27	chr3	134990584	134991083	+	0	NA	Intergenic	Intergenic	476734	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
0.296531-106	chr8	128434357	128434856	+	0	NA	intron (NR_117100, intron 4 of 5)	L2a|LINE|L2	6749	NM_001159542	5462	Hs.450254	NM_001159542	ENSG00000212993	POU5F1B	OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
2.18245	chr12	95266827	95267326	+	0	NA	Intergenic	CpG	38846	NR_036685	160313	Hs.527883	NR_036685	ENSG00000216306	KRT19P2	KRT19P5	keratin 19 pseudogene 2	pseudo
2.35824-8	chr2	103443337	103443836	+	0	NA	Intergenic	Intergenic	65096	NM_144632	130827	Hs.436203	NM_144632	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
2.39578-9	chr10	419434	419933	+	0	NA	intron (NM_014974, intron 17 of 36)	LTR14B|LTR|ERVK	-91657	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
0.757207-5	chr14	31676824	31677323	+	0	NA	promoter-TSS (NM_015382)	promoter-TSS (NM_015382)	-344	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
8.18156-7	chr12	52785299	52785798	+	0	NA	Intergenic	Intergenic	-6131	NM_033045	3890	Hs.272336	NM_033045	ENSG00000161849	KRT84	HB4|KRTHB4	keratin 84	protein-coding
0.783135-19	chr9	140445763	140446262	+	0	NA	promoter-TSS (NM_001098537)	promoter-TSS (NM_001098537)	-297	NM_032477	64975	Hs.44017	NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27	mitochondrial ribosomal protein L41	protein-coding
8.82729-3	chr2	37020061	37020560	+	0	NA	intron (NM_053276, intron 12 of 15)	intron (NM_053276, intron 12 of 15)	96477	NM_001328661	5212	Hs.137415	NM_053276	ENSG00000205221	VIT	-	vitrin	protein-coding
7.16699-7	chr7	56219749	56220248	+	0	NA	Intergenic	SVA_D|Other|Other	-35908	NM_001145712	389493	Hs.177948	NM_001145712	ENSG00000185290	NUPR2	NUPR1L	nuclear protein 2, transcriptional regulator	protein-coding
0.996329-16	chr8	144317313	144317812	+	0	NA	Intergenic	Intergenic	-11429	NM_001271156	286128	Hs.668016	NM_173832	ENSG00000181638	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
2.13959-20	chr19	1266254	1266753	+	0	NA	TTS (NR_027271)	TTS (NR_027271)	-2762	NM_001300829	1153	Hs.618145	NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
5.67031-10	chr11	119384726	119385225	+	0	NA	Intergenic	Intergenic	-89280	NM_001311162	7070	Hs.644697	NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
4.50997-4	chrX	130282800	130283299	+	0	NA	Intergenic	L1MC3|LINE|L1	66640	NM_001330651	158763	Hs.22905	NM_144967	ENSG00000147256	ARHGAP36	-	Rho GTPase activating protein 36	protein-coding
6.30784-16	chr1	203097225	203097724	+	0	NA	5' UTR (NM_000674, exon 2 of 4)	5' UTR (NM_000674, exon 2 of 4)	638	NM_001048230	134	Hs.77867	NM_000674	ENSG00000163485	ADORA1	RDC7	adenosine A1 receptor	protein-coding
1.31356-8	chr17	76310239	76310738	+	0	NA	Intergenic	CpG	-35915	NR_073178	100996291	Hs.744493	NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
3.22393-3	chr6	73957750	73958249	+	0	NA	intron (NM_001251874, intron 2 of 4)	intron (NM_001251874, intron 2 of 4)	14920	NM_030568	80759	Hs.433062	NM_030568	ENSG00000135314	KHDC1	C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4	KH homology domain containing 1	protein-coding
7.32828	chr13	93329742	93330241	+	0	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	42217	NR_049776	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
1.50581-36	chr2	74881326	74881825	+	0	NA	non-coding (NR_073398, exon 1 of 12)	non-coding (NR_073398, exon 1 of 12)	220	NR_073398	10505	Hs.25887	NM_004263	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	ssemaphorin 4F	protein-coding
1.75874-16	chr2	161552119	161552999	+	0	NA	Intergenic	L2c|LINE|L2	-202241	NM_002897	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
0.629839-5	chr12	66217729	66218228	+	0	NA	promoter-TSS (NM_003484)	promoter-TSS (NM_003484)	-262	NM_003484	8091	Hs.505924	NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
1.97911-9	chr9	119981157	119981656	+	0	NA	intron (NM_014010, intron 2 of 21)	intron (NM_014010, intron 2 of 21)	-37926	NR_003708	100124538	Hs.693445	NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
8.53872-4	chr6	36816387	36816886	+	0	NA	Intergenic	Intergenic	-9416	NM_001314017	57699	Hs.657869	NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
0.172766-44	chr19	1863963	1864462	+	0	NA	promoter-TSS (NM_031918)	promoter-TSS (NM_031918)	-648	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel like factor 16	protein-coding
3.85103-15	chr2	200175746	200176245	+	0	NA	intron (NM_001172509, intron 9 of 10)	intron (NM_001172509, intron 9 of 10)	146824	NM_001172509	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
0.296531-66	chr7	33431765	33432264	+	0	NA	intron (NM_001033604, intron 18 of 21)	MLT1H|LTR|ERVL-MaLR	262862	NM_014451	27241	Hs.372360	NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
18.7615-8	chr1	230294534	230295033	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	91841	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
1.97911-7	chr7	112758560	112759059	+	0	NA	promoter-TSS (NR_024412)	promoter-TSS (NR_024412)	-172	NR_024412	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
0.33389-6	chr12	113022061	113022560	+	0	NA	intron (NM_001347952, intron 1 of 21)	intron (NM_001347952, intron 1 of 21)	9409	NM_001347952	22895	Hs.21239	NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
3.56547-11	chr22	24249274	24249773	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-8406	NR_038911	284889	Hs.632772	NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
1.15771-15	chr1	77684512	77685011	+	0	NA	intron (NM_005482, intron 1 of 10)	intron (NM_005482, intron 1 of 10)	371	NM_005482	10026	Hs.178305	NM_005482	ENSG00000142892	PIGK	GPI8	phosphatidylinositol glycan anchor biosynthesis class K	protein-coding
1.70053	chr12	125573408	125573907	+	0	NA	intron (NM_023928, intron 4 of 17)	intron (NM_023928, intron 4 of 17)	23744	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
0.141246-37	chr7	158750125	158750624	+	0	NA	Intergenic	CpG	-50671	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
1.77178-7	chr3	170641844	170642343	+	0	NA	Intergenic	SVA_C|Other|Other	-15667	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
0.400052-3	chr18	54230743	54231242	+	0	NA	Intergenic	Intergenic	74928	NM_004786	9352	Hs.114412	NM_004786	ENSG00000091164	TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin like 1	protein-coding
2.62013-8	chr7	44788626	44789125	+	0	NA	intron (NM_031449, intron 1 of 18)	CpG	345	NM_031449	83637	Hs.77978	NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
18.9279-3	chr1	54094784	54095283	+	0	NA	intron (NM_147193, intron 1 of 9)	intron (NM_147193, intron 1 of 9)	104844	NM_147193	148979	Hs.306691	NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
0.428718-39	chr15	75847024	75847523	+	0	NA	intron (NM_002833, intron 1 of 12)	intron (NM_002833, intron 1 of 12)	24359	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding
1.97226-4	chr6	123057201	123057700	+	0	NA	Intergenic	Intergenic	-12896	NM_001319042	2173	Hs.26770	NM_001446	ENSG00000164434	FABP7	B-FABP|BLBP|FABPB|MRG	fatty acid binding protein 7	protein-coding
1.6877-7	chr9	75791293	75791792	+	0	NA	Intergenic	MER41-int|LTR|ERV1	24895	NM_000700	301	Hs.494173	NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
1.76526-5	chr5	138677801	138678300	+	0	NA	promoter-TSS (NM_001033112)	promoter-TSS (NM_001033112)	-73	NM_001033112	51247	Hs.396644	NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
9.1364-9	chr6	30181330	30181829	+	0	NA	promoter-TSS (NM_003449)	promoter-TSS (NM_003449)	-308	NM_003449	7726	Hs.485041	NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
0.409586-7	chr4	111086580	111087079	+	0	NA	intron (NM_001130721, intron 2 of 4)	MIRb|SINE|MIR	32942	NM_001130721	79071	Hs.412939	NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
5.48214-10	chr10	61666436	61666935	+	0	NA	promoter-TSS (NM_005436)	promoter-TSS (NM_005436)	-271	NM_005436	8030	Hs.591360	NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|TPC|TST1	coiled-coil domain containing 6	protein-coding
3.88277-5	chr4	5891803	5892302	+	0	NA	promoter-TSS (NM_001288661)	promoter-TSS (NM_001288661)	-99	NM_001288661	1400	Hs.135270	NM_001313	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
2.54145-7	chr8	101903695	101904194	+	0	NA	Intergenic	SVA_D|Other|Other	58855	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
12.0066-2	chr10	92034727	92035226	+	0	NA	Intergenic	Intergenic	265586	NR_110657	101926942	Hs.382666	NR_110657	ENSG00000236373	LOC101926942	-	uncharacterized LOC101926942	ncRNA
3.90406-6	chr13	79508643	79509142	+	0	NA	Intergenic	Intergenic	-94707	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
27.3755	chr5	21685907	21686406	+	0	NA	Intergenic	MER21B|LTR|ERVL	-198407	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
6.69586-4	chr7	9023337	9023836	+	0	NA	Intergenic	Intergenic	550001	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
0.0130484-48	chr17	74696393	74696892	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	9037	NR_130926	439921	Hs.250723	NM_198530	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix remodeling associated 7	protein-coding
4.88117-4	chr13	79762348	79762847	+	0	NA	Intergenic	MIRb|SINE|MIR	217759	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
8.29738-10	chr2	28620960	28621459	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-3670	NR_103831	403150	Hs.562970	NR_103831	ENSG00000229951	FLJ31356	-	uncharacterized protein FLJ31356	ncRNA
0.90444-15	chr19	10680042	10680541	+	0	NA	promoter-TSS (NM_079421)	promoter-TSS (NM_079421)	-636	NM_079421	1032	Hs.435051	NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
0.33389-7	chr16	29816833	29817332	+	0	NA	promoter-TSS (NM_001276276)	promoter-TSS (NM_001276276)	-335	NM_001276275	4150	Hs.23650	NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
3.81952-4	chr10	52381615	52382114	+	0	NA	intron (NM_147156, intron 1 of 10)	(CTTG)n|Simple_repeat|Simple_repeat	1873	NM_147156	259230	Hs.654698	NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
3.63512-31	chr11	19261992	19262491	+	0	NA	5' UTR (NM_024680, exon 1 of 13)	5' UTR (NM_024680, exon 1 of 13)	266	NM_024680	79733	Hs.523526	NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
0.909791-9	chr19	45579501	45580000	+	0	NA	promoter-TSS (NM_145288)	promoter-TSS (NM_145288)	96	NM_145288	162979	Hs.192237	NM_145288	ENSG00000170684	ZNF296	ZFP296|ZNF342	zinc finger protein 296	protein-coding
2.80669-7	chr17	4268380	4268879	+	0	NA	intron (NM_003342, intron 1 of 5)	CpG	1340	NM_003342	7326	Hs.741319	NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
0.877779-23	chr4	185747094	185747877	+	0	NA	promoter-TSS (NM_001995)	promoter-TSS (NM_001995)	-217	NM_001286711	2180	Hs.406678	NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long-chain family member 1	protein-coding
6.92504-4	chr2	85676281	85676780	+	0	NA	Intergenic	Intergenic	30476	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
15.9688-10	chr16	9031618	9032117	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-1281	NM_001286457	7874	Hs.386939	NM_003470	ENSG00000187555	USP7	HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
3.1158-13	chr19	39971219	39972066	+	0	NA	intron (NM_001001563, intron 1 of 10)	CpG	590	NM_001329559	92609	Hs.590956	NM_001001563	ENSG00000105197	TIMM50	TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
2.66803-9	chr4	80956458	80956957	+	0	NA	intron (NM_001145794, intron 8 of 15)	intron (NM_001145794, intron 8 of 15)	37770	NM_001286781	118429	Hs.162963	NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	anthrax toxin receptor 2	protein-coding
3.43902-2	chr5	100163123	100163622	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-11103	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
3.77786-10	chr15	67155113	67155612	+	0	NA	Intergenic	Intergenic	93491	NR_135687	102723481	Hs.512978	NR_135687	ENSG00000259289	LOC102723481	-	uncharacterized LOC102723481	ncRNA
5.22879-24	chr3	72207151	72207650	+	0	NA	intron (NR_038221, intron 1 of 2)	intron (NR_038221, intron 1 of 2)	6992	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
0.423927-6	chr1	59362162	59362661	+	0	NA	intron (NR_034014, intron 3 of 3)	intron (NR_034014, intron 3 of 3)	111588	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
1.20331-17	chr2	203130544	203131043	+	0	NA	intron (NM_015934, intron 1 of 14)	intron (NM_015934, intron 1 of 14)	354	NM_015934	51602	Hs.471104	NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
53.8828	chr4	108964552	108965051	+	0	NA	Intergenic	Intergenic	38981	NM_001331027	3033	Hs.438289	NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
1.42668-3	chr15	27136419	27136918	+	0	NA	intron (NM_001165037, intron 6 of 10)	intron (NM_001165037, intron 6 of 10)	24395	NM_001165037	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	gamma-aminobutyric acid type A receptor alpha5 subunit	protein-coding
8.38632-7	chr1	27391580	27392079	+	0	NA	Intergenic	SVA_E|Other|Other	-52496	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	-	family with sequence similarity 46 member B	protein-coding
13.7986	chr11	69009914	69010413	+	0	NA	Intergenic	Intergenic	-51442	NM_001293296	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
2.0204	chr4	158186343	158186842	+	0	NA	intron (NM_001083620, intron 2 of 15)	MLT1H2|LTR|ERVL-MaLR	44772	NM_001083620	2891	Hs.32763	NM_000826	ENSG00000120251	GRIA2	GLUR2|GLURB|GluA2|GluR-K2|HBGR2	glutamate ionotropic receptor AMPA type subunit 2	protein-coding
0.428718-2	chr15	61660092	61660591	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-138839	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
0.550241-37	chr7	127876962	127877461	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-4120	NM_000230	3952	Hs.194236	NM_000230	ENSG00000174697	LEP	LEPD|OB|OBS	leptin	protein-coding
1.16339-10	chr12	6677255	6677754	+	0	NA	promoter-TSS (NM_001258309)	promoter-TSS (NM_001258309)	-6	NM_001258309	4839	Hs.534334	NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
1.40261-2	chr1	110088822	110089321	+	0	NA	TTS (NM_031936)	TTS (NM_031936)	-2115	NM_006496	2773	Hs.73799	NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1	G protein subunit alpha i3	protein-coding
12.4489-5	chr2	18492603	18493102	+	0	NA	Intergenic	Intergenic	249107	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
8.82729-4	chr8	1712405	1712904	+	0	NA	promoter-TSS (NR_134303)	promoter-TSS (NR_134303)	96	NR_134303	101927752	Hs.356690	NR_134302	ENSG00000253982	LOC101927752	-	uncharacterized LOC101927752	ncRNA
13.0016-3	chr7	38898202	38898701	+	0	NA	intron (NM_014396, intron 4 of 28)	Tigger3b|DNA|TcMar-Tigger	50349	NM_014396	27072	Hs.592184	NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|hVps41p	VPS41, HOPS complex subunit	protein-coding
0.177288-21	chrX	152863929	152864428	+	0	NA	promoter-TSS (NR_131982)	promoter-TSS (NR_131982)	454	NM_152274	92002	Hs.496943	NM_152274	ENSG00000262919	FAM58A	STAR	family with sequence similarity 58 member A	protein-coding
0.409586-5	chr1	182808893	182809392	+	0	NA	intron (NR_033302, intron 1 of 28)	intron (NR_033302, intron 1 of 28)	703	NM_001357	1660	Hs.191518	NM_001357	ENSG00000135829	DHX9	DDX9|LKP|NDH2|NDHII|RHA	DExH-box helicase 9	protein-coding
0.443122-5	chr21	45566936	45567435	+	0	NA	Intergenic	Intergenic	13691	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
2.94136-6	chr14	93511584	93512083	+	0	NA	intron (NM_001142593, intron 3 of 10)	intron (NM_001142593, intron 3 of 10)	-21964	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
0.472076-13	chr17	77772018	77772517	+	0	NA	Intergenic	CpG-11232	-1352	NM_020649	57332	Hs.387258	NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
1.37869-45	chr5	43284825	43285324	+	0	NA	Intergenic	L1MA4A|LINE|L1	28252	NM_001324219	3157	Hs.397729	NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
7.98603-12	chr17	55859977	55860476	+	0	NA	Intergenic	Intergenic	-37536	NM_001282544	101927581	Hs.540784	NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
0.190881-40	chr1	108888701	108889200	+	0	NA	Intergenic	Intergenic	-102247	NM_001143989	148545	Hs.511849	NM_152488	ENSG00000196427	NBPF4	-	neuroblastoma breakpoint family member 4	protein-coding
10.0349	chr7	7041900	7042399	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	64527	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
3.43902-10	chr7	6098585	6099084	+	0	NA	promoter-TSS (NM_014413)	promoter-TSS (NM_014413)	26	NM_001134335	27102	Hs.520205	NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
0.409586-11	chr22	18560586	18561085	+	0	NA	promoter-TSS (NM_001127649)	promoter-TSS (NM_001127649)	75	NM_001127649	55670	Hs.517400	NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
3.00162-4	chr11	46294212	46294711	+	0	NA	Intergenic	Intergenic	-4728	NM_052854	90993	Hs.405961	NM_052854	ENSG00000157613	CREB3L1	OASIS	cAMP responsive element binding protein 3 like 1	protein-coding
7.74691-2	chr13	100958173	100958672	+	0	NA	intron (NM_001127692, intron 13 of 22)	intron (NM_001127692, intron 13 of 22)	174847	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
8.26814-9	chr5	108820619	108821118	+	0	NA	Intergenic	Intergenic	-75193	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
3.05395-2	chr8	93183135	93183634	+	0	NA	Intergenic	Intergenic	-3645	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
2.88193	chr17	7475651	7476150	+	0	NA	promoter-TSS (NM_001416)	promoter-TSS (NM_001416)	-124	NM_001416	1973	Hs.129673	NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
23.2606	chr3	77525646	77526145	+	0	NA	intron (NM_001128929, intron 1 of 24)	intron (NM_001128929, intron 1 of 24)	378732	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
0.0261362-10	chr6	103684777	103685276	+	0	NA	Intergenic	Intergenic	1622395	NM_001321083	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
10.7624	chr4	72096656	72097155	+	0	NA	intron (NM_001134742, intron 1 of 24)	intron (NM_001134742, intron 1 of 24)	43902	NM_001134742	8671	Hs.5462	NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
2.01349-5	chr7	72847791	72848290	+	0	NA	promoter-TSS (NM_003508)	promoter-TSS (NM_003508)	-69	NM_003508	8326	Hs.647029	NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
5.62249-8	chr6	37070976	37071475	+	0	NA	Intergenic	Intergenic	-66697	NM_002648	5292	Hs.81170	NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
4.57175-5	chr8	81784228	81784727	+	0	NA	intron (NM_001033723, intron 1 of 8)	intron (NM_001033723, intron 1 of 8)	2539	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
1.39063-22	chr5	158517940	158518439	+	0	NA	intron (NM_001324101, intron 4 of 16)	intron (NM_001324101, intron 4 of 16)	8581	NM_001324103	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
1.45087-23	chr15	35279947	35280446	+	0	NA	intron (NM_014106, intron 1 of 2)	intron (NM_014106, intron 1 of 2)	301	NM_014106	54989	Hs.744990	NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
2.05512-23	chr8	87401326	87401825	+	0	NA	intron (NM_007013, intron 5 of 24)	SVA_B|Other|Other	46581	NM_007013	11059	Hs.655189	NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
3.25139-2	chr19	13884964	13885463	+	0	NA	promoter-TSS (NM_014047)	promoter-TSS (NM_014047)	-44	NM_014047	28974	Hs.231616	NM_014047	ENSG00000104979	C19orf53	HSPC023|LYDG10	chromosome 19 open reading frame 53	protein-coding
1.20904-20	chr1	45187617	45188116	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	-17624	NM_001297655	11004	Hs.720061	NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
6.9897-4	chr9	125572395	125572894	+	0	NA	Intergenic	Intergenic	10242	NM_080859	392392	Hs.632681	NM_080859	ENSG00000165204	OR1K1	hg99	olfactory receptor family 1 subfamily K member 1	protein-coding
2.43364-23	chr12	31477255	31477754	+	0	NA	non-coding (NR_026806, exon 1 of 1)	non-coding (NR_026806, exon 1 of 1)	254	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
0.0174066-14	chr12	6776633	6777132	+	0	NA	exon (NM_133476, exon 10 of 10)	exon (NM_133476, exon 10 of 10)	-4574	NM_001127582	51147	Hs.524210	NM_016162	ENSG00000111653	ING4	my036|p29ING4	inhibitor of growth family member 4	protein-coding
0.296531-7	chr3	99536256	99536755	+	0	NA	promoter-TSS (NM_032359)	promoter-TSS (NM_032359)	-173	NM_032359	84319	Hs.581320	NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog (yeast)	protein-coding
3.56547-12	chr6	161589418	161589917	+	0	NA	intron (NM_020133, intron 2 of 8)	L2b|LINE|L2	-6653	NR_024277	79992	Hs.664873	NM_024929	ENSG00000279355	AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
0.32452-3	chr5	6378674	6379173	+	0	NA	promoter-TSS (NM_032286)	promoter-TSS (NM_032286)	-284	NM_032286	84246	Hs.13885	NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
2.26945-5	chr19	11386745	11387244	+	0	NA	Intergenic	SVA_B|Other|Other	-13826	NM_020812	57572	Hs.591002	NM_020812	ENSG00000130158	DOCK6	AOS2|ZIR1	dedicator of cytokinesis 6	protein-coding
0.163737-6	chr5	158444709	158445208	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	81812	NM_001324103	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
0.979971-15	chr2	187386284	187386783	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	35648	NM_018471	55854	Hs.741180	NM_018471	ENSG00000065548	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
8.9279-9	chr2	38735487	38735986	+	0	NA	intron (NR_110259, intron 1 of 4)	intron (NR_110259, intron 1 of 4)	7146	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
9.20819	chr8	126412054	126412553	+	0	NA	Intergenic	L1M5|LINE|L1	-30260	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
4.85452-5	chr1	73310950	73311449	+	0	NA	Intergenic	LTR35|LTR|ERV1	-460654	NR_110676	101927295	Hs.436589	NR_110676	ENSG00000233973	LINC01360	-	long intergenic non-protein coding RNA 1360	ncRNA
5.5752-2	chr11	44901736	44902235	+	0	NA	intron (NM_130783, intron 2 of 8)	MIRb|SINE|MIR	69774	NM_001318384	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
3.29754-2	chr12	103351201	103351700	+	0	NA	promoter-TSS (NM_004316)	promoter-TSS (NM_004316)	-2	NM_004316	429	Hs.703025	NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
16.5561	chr9	33800317	33800816	+	0	NA	Intergenic	Intergenic	5007	NM_002771	5646	Hs.654513	NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	protease, serine 3	protein-coding
3.59519-2	chr16	30103795	30104294	+	0	NA	promoter-TSS (NM_004608)	promoter-TSS (NM_004608)	-839	NM_004608	6911	Hs.198301	NM_004608	ENSG00000149922	TBX6	SCDO5	T-box 6	protein-coding
1.20331-2	chr7	5527354	5527853	+	0	NA	intron (NM_024963, intron 4 of 4)	intron (NM_024963, intron 4 of 4)	7945	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
0.599818-2	chr13	113627194	113627693	+	0	NA	intron (NM_001112732, intron 1 of 29)	intron (NM_001112732, intron 1 of 29)	3908	NM_001112732	23263	Hs.170422	NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
0.172766-43	chr1	165205141	165205640	+	0	NA	intron (NM_177398, intron 4 of 8)	CpG	120088	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
2.59637-4	chr12	52607159	52607658	+	0	NA	intron (NR_027358, intron 3 of 4)	intron (NR_027358, intron 3 of 4)	2694	NR_027358	283404	Hs.662443	NR_027358	ENSG00000258279	LINC00592	-	long intergenic non-protein coding RNA 592	ncRNA
0.0130484-56	chr11	126872786	126873285	+	0	NA	non-coding (NR_040078, exon 1 of 3)	non-coding (NR_040078, exon 1 of 3)	230	NR_040078	283165	Hs.730461	NM_173579	ENSG00000218109	KIRREL3-AS3	NCRNA00288|PRR10	KIRREL3 antisense RNA 3	ncRNA
5.9176-2	chr1	35084843	35085342	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	50203	NR_030278	693137		NR_030278	ENSG00000207941	MIR552	MIRN552|hsa-mir-552	microRNA 552	ncRNA
16.1798-6	chr7	148134011	148134510	+	0	NA	Intergenic	LTR1|LTR|ERV1	-153397	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
0.254883-24	chrX	41192409	41192908	+	0	NA	promoter-TSS (NR_126093)	promoter-TSS (NR_126093)	97	NR_126093	1654	Hs.728563	NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102	DEAD-box helicase 3, X-linked	protein-coding
1.03474-11	chr1	201437713	201438212	+	0	NA	non-coding (NR_073080, exon 1 of 3)	non-coding (NR_073080, exon 1 of 3)	337	NM_012396	23612	Hs.153944	NM_012396	ENSG00000174307	PHLDA3	TIH1	pleckstrin homology like domain family A member 3	protein-coding
3.29754-8	chr13	115079631	115080130	+	0	NA	promoter-TSS (NM_001164144)	promoter-TSS (NM_001164144)	70	NM_001164145	283489	Hs.7542	NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
1.26679-6	chr7	44078605	44079104	+	0	NA	non-coding (NR_015401, exon 1 of 3)	non-coding (NR_015401, exon 1 of 3)	206	NR_015401	255031	Hs.633978	NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
5.33132	chr4	128983206	128984180	+	0	NA	intron (NM_018078, intron 1 of 19)	intron (NM_018078, intron 1 of 19)	1272	NM_032239	55132	Hs.657067	NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein domain family member 1B	protein-coding
19.6658	chr10	48354831	48355330	+	0	NA	promoter-TSS (NM_153034)	promoter-TSS (NM_153034)	56	NM_001346932	118738	Hs.27788	NM_153034	ENSG00000265763	ZNF488	-	zinc finger protein 488	protein-coding
0.736576-2	chr20	50383823	50384322	+	0	NA	intron (NM_006045, intron 1 of 27)	CpG	878	NM_006045	10079	Hs.649234	NM_006045	ENSG00000054793	ATP9A	ATPIIA	ATPase phospholipid transporting 9A (putative)	protein-coding
7.74691-7	chr10	124713572	124714071	+	0	NA	promoter-TSS (NM_024942)	promoter-TSS (NM_024942)	98	NM_024942	80007	Hs.501286	NM_024942	ENSG00000119965	C10orf88	-	chromosome 10 open reading frame 88	protein-coding
14.023	chr2	6194467	6194966	+	0	NA	Intergenic	Intergenic	72606	NR_026833	400940	Hs.378814	NM_207479		LOC400940	-	uncharacterized LOC400940	ncRNA
0.296531-125	chr9_gl000199_random	118134	118633	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.963675-9	chr1	96150596	96151095	+	0	NA	Intergenic	Intergenic	175173	NR_110621	100996635	Hs.639548	NR_110621	ENSG00000228971	LOC100996635	-	uncharacterized LOC100996635	ncRNA
5.67031-11	chr4	153943343	153943842	+	0	NA	Intergenic	Intergenic	79457	NM_033393	85462	Hs.132629	NM_033393	ENSG00000137460	FHDC1	-	FH2 domain containing 1	protein-coding
0.462403-15	chr14	55896805	55897304	+	0	NA	intron (NM_199047, intron 4 of 6)	intron (NM_199047, intron 4 of 6)	10209	NM_199047	387332	Hs.528278	NM_199047	ENSG00000182521	TBPL2	TBP2|TRF3	TATA-box binding protein like 2	protein-coding
0.273344-13	chr1	9864275	9864774	+	0	NA	intron (NM_001009566, intron 1 of 18)	intron (NM_001009566, intron 1 of 18)	20060	NM_001302883	22883	Hs.29665	NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
6.55608-14	chr10	81321801	81322300	+	0	NA	Intergenic	Intergenic	-1833	NM_001320813	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
5.78396-10	chr11	8214191	8214690	+	0	NA	Intergenic	Intergenic	-23799	NM_001346692	79608	Hs.231850	NM_024557	ENSG00000166405	RIC3	AYST720|PRO1385	RIC3 acetylcholine receptor chaperone	protein-coding
0.400052-30	chr4	104119343	104119842	+	0	NA	promoter-TSS (NM_001813)	promoter-TSS (NM_001813)	-26	NM_001813	1062	Hs.75573	NM_001813	ENSG00000138778	CENPE	CENP-E|KIF10|MCPH13|PPP1R61	centromere protein E	protein-coding
1.26679-2	chr11	18745528	18746027	+	0	NA	exon (NM_173588, exon 2 of 23)	exon (NM_173588, exon 2 of 23)	2000	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
1.6813-8	chr7	153768896	153769395	+	0	NA	intron (NM_130797, intron 1 of 25)	intron (NM_130797, intron 1 of 25)	-11490	NR_136254	101929998	Hs.689473	NR_136254		LOC101929998	-	uncharacterized LOC101929998	ncRNA
0.190881-7	chr11	94397436	94397935	+	0	NA	intron (NR_135096, intron 4 of 6)	L2c|LINE|L2	75836	NR_135094	105369438	Hs.568921	NR_135093	ENSG00000255929	LOC105369438	-	uncharacterized LOC105369438	ncRNA
0.619809-8	chr7	131287609	131288108	+	0	NA	Intergenic	Intergenic	-46482	NM_005397	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
16.1618-3	chr11	71796917	71797416	+	0	NA	intron (NM_001145308, intron 1 of 6)	MLT1H|LTR|ERVL-MaLR	-5427	NM_006185	4926	Hs.325978	NM_006185	ENSG00000137497	NUMA1	NMP-22|NUMA	nuclear mitotic apparatus protein 1	protein-coding
3.12471-16	chr5	131410995	131411494	+	0	NA	intron (NM_000758, intron 3 of 3)	intron (NM_000758, intron 3 of 3)	1759	NM_000758	1437	Hs.1349	NM_000758	ENSG00000164400	CSF2	GMCSF	colony stimulating factor 2	protein-coding
0.390538-6	chr2	177053106	177053605	+	0	NA	promoter-TSS (NR_106991)	promoter-TSS (NR_106991)	48	NM_024501	3231	Hs.83465	NM_024501	ENSG00000128645	HOXD1	HOX4|HOX4G|Hox-4.7	homeobox D1	protein-coding
0.305841-10	chr22	38448206	38448705	+	0	NA	Intergenic	Intergenic	-4807	NM_001039584	9463	Hs.180871	NM_012407	ENSG00000100151	PICK1	PICK|PRKCABP	protein interacting with PRKCA 1	protein-coding
2.36572-9	chr2	15682298	15682797	+	0	NA	intron (NM_015909, intron 6 of 51)	SVA_D|Other|Other	18925	NM_015909	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
0.315171-25	chr12	51925513	51926012	+	0	NA	Intergenic	Intergenic	-59258	NM_001330260	6334	Hs.436550	NM_014191	ENSG00000196876	SCN8A	BFIS5|CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4	sodium voltage-gated channel alpha subunit 8	protein-coding
0.296531-120	chr9_gl000199_random	78650	79149	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.428718-23	chr10	111985610	111986109	+	0	NA	promoter-TSS (NM_005962)	promoter-TSS (NM_005962)	97	NM_005962	4601	Hs.602078	NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
5.46682-4	chr15	75149618	75150117	+	0	NA	intron (NM_005697, intron 1 of 8)	intron (NM_005697, intron 1 of 8)	-14315	NR_104309	25989	Hs.513034	NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
14.023-2	chr8	137499998	137500497	+	0	NA	Intergenic	Intergenic	925584	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
5.60667-6	chr14	23127966	23128465	+	0	NA	Intergenic	Intergenic	61068	NM_022060	63874	Hs.445665	NM_022060	ENSG00000100439	ABHD4	ABH4	abhydrolase domain containing 4	protein-coding
0.400052-41	chr3	156877058	156877557	+	0	NA	intron (NM_020307, intron 1 of 10)	CpG-19080	1242	NM_020307	57018	Hs.4859	NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
7.35182-10	chr1	16575145	16575644	+	0	NA	3' UTR (NM_018994, exon 10 of 10)	3' UTR (NM_018994, exon 10 of 10)	-11735	NM_030907	79363	Hs.546430	NM_030907	ENSG00000132881	RSG1	C1orf89	REM2 and RAB like small GTPase 1	protein-coding
0.070049-3	chr11	31724433	31724932	+	0	NA	intron (NM_001288726, intron 10 of 11)	intron (NM_001288726, intron 10 of 11)	101103	NM_001310161	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
9.06578-10	chr4	97837817	97838316	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-450011	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
10.7212-3	chr3	16112706	16113205	+	0	NA	Intergenic	Intergenic	-102874	NM_001319051	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
12.0066-4	chr16	46588209	46588708	+	0	NA	intron (NR_026556, intron 4 of 16)	LTR13|LTR|ERVK	14551	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
3.29754-12	chr10	70321050	70321549	+	0	NA	intron (NM_030625, intron 1 of 11)	intron (NM_030625, intron 1 of 11)	1182	NM_030625	80312	Hs.258855	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
1.03474-13	chr13	102649249	102649748	+	0	NA	intron (NM_001321945, intron 2 of 5)	L2a|LINE|L2	-29402	NR_039603	100616110		NR_039603	ENSG00000265164	MIR2681	-	microRNA 2681	ncRNA
2.96709-17	chr6	63544132	63544631	+	0	NA	Intergenic	L1PA15|LINE|L1	485501	NM_001143940	51557	Hs.149585	NM_016571	ENSG00000146166	LGSN	GLULD1|LGS	lengsin, lens protein with glutamine synthetase domain	protein-coding
9.82967-14	chr6	15458105	15458604	+	0	NA	intron (NM_004973, intron 4 of 17)	intron (NM_004973, intron 4 of 17)	204935	NM_032122	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
0.0744648-36	chr3	179478688	179479187	+	0	NA	exon (NM_003940, exon 17 of 21)	exon (NM_003940, exon 17 of 21)	108004	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
0.296531-143	chr2	33701373	33701872	+	0	NA	5' UTR (NM_001139488, exon 1 of 18)	5' UTR (NM_001139488, exon 1 of 18)	301	NM_001139488	25780	Hs.143674	NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
1.0513-8	chrX	153626326	153626825	+	0	NA	promoter-TSS (NM_001303624)	promoter-TSS (NM_001303624)	-138	NM_001303624	6134	Hs.534404	NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|NOV|QM	ribosomal protein L10	protein-coding
3.29754-9	chr8	82228972	82229471	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	36503	NM_001444	2171	Hs.408061	NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
6.9897-7	chr7	35734478	35734977	+	0	NA	promoter-TSS (NR_136255)	promoter-TSS (NR_136255)	45	NM_022373	64224	Hs.643051	NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
0.241089-39	chr16	88994693	88995192	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-11503	NM_001290330	100129697	Hs.689377	NM_001290330		LOC100129697	-	uncharacterized LOC100129697	protein-coding
0.486625-15	chr13	78325853	78326352	+	0	NA	intron (NM_001040153, intron 4 of 6)	intron (NM_001040153, intron 4 of 6)	10807	NM_001242870	122060	Hs.349955	NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
0.385789-17	chr3	159724259	159724758	+	0	NA	intron (NR_108088, intron 6 of 9)	intron (NR_108088, intron 6 of 9)	-13928	NR_104132	730109	Hs.99333	NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
0.395292-2	chr14	104690319	104690818	+	0	NA	Intergenic	Intergenic	85508	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
0.634863-14	chr21	37529099	37529598	+	0	NA	promoter-TSS (NR_038894)	promoter-TSS (NR_038894)	268	NM_001320714	9980	Hs.204575	NM_005128	ENSG00000142197	DOPEY2	21orf5|C21orf5	dopey family member 2	protein-coding
8.99629-2	chr8	133967019	133967518	+	0	NA	intron (NM_003235, intron 27 of 47)	intron (NM_003235, intron 27 of 47)	88063	NM_003235	7038	Hs.654591	NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
12.4718-2	chr14	77252874	77253373	+	0	NA	promoter-TSS (NR_104183)	promoter-TSS (NR_104183)	-56	NR_104184	100506603	Hs.673984	NR_104183	ENSG00000258301	LOC100506603	-	uncharacterized LOC100506603	ncRNA
2.24026-15	chr12	16240194	16240693	+	0	NA	Intergenic	AluSz|SINE|Alu	176337	NM_001300779	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
5.36107-3	chr6	74515215	74515714	+	0	NA	intron (NM_001159588, intron 23 of 31)	LTR5_Hs|LTR|ERVK	-109610	NR_110889	101928489	Hs.660059	NR_110889	ENSG00000231652	LOC101928489	-	uncharacterized LOC101928489	ncRNA
3.63512-16	chr9	100954614	100955507	+	0	NA	promoter-TSS (NM_052820)	promoter-TSS (NM_052820)	-104	NM_052820	7464	Hs.113094	NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
3.30683-16	chr8	125380558	125381057	+	0	NA	intron (NM_194291, intron 1 of 6)	MLT1F|LTR|ERVL-MaLR	4133	NM_194291	157378	Hs.187646	NM_194291	ENSG00000164983	TMEM65	-	transmembrane protein 65	protein-coding
9.62574-25	chr6	56667236	56667735	+	0	NA	intron (NM_001144769, intron 4 of 96)	intron (NM_001144769, intron 4 of 96)	40978	NM_183380	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
0.296531-82	chr8	22418755	22419254	+	0	NA	intron (NM_005775, intron 6 of 20)	intron (NM_005775, intron 6 of 20)	-4175	NM_001018003	10174	Hs.528572	NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
0.0305075-20	chr1	70926571	70927298	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	50033	NM_153742	1491	Hs.19904	NM_001902	ENSG00000116761	CTH	-	cystathionine gamma-lyase	protein-coding
3.71611-6	chr2	220363273	220363772	+	0	NA	promoter-TSS (NM_013335)	promoter-TSS (NM_013335)	-65	NM_013335	29926	Hs.27059	NM_013335	ENSG00000144591	GMPPA	AAMR	GDP-mannose pyrophosphorylase A	protein-coding
2.41845-10	chr17	79790635	79791134	+	0	NA	TTS (NM_001007533)	TTS (NM_001007533)	286	NM_207368	348262	Hs.514632	NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
0.680339-38	chr16	88794300	88794799	+	0	NA	intron (NM_001142864, intron 22 of 50)	L1MC4|LINE|L1	-3039	NR_103774	100289580	Hs.437712	NM_207451		LOC100289580	-	uncharacterized LOC100289580	ncRNA
7.93174-10	chr6	7543146	7543645	+	0	NA	intron (NM_001008844, intron 1 of 23)	CpG	1587	NM_001319034	1832	Hs.519873	NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding
0.0656377-5	chr13	21871982	21872481	+	0	NA	promoter-TSS (NR_038939)	promoter-TSS (NR_038939)	-33	NR_038939	650794	Hs.147563	NR_038939		MIPEPP3	-	mitochondrial intermediate peptidase pseudogene 3	pseudo
0.920515-18	chr18	25056310	25056809	+	0	NA	Intergenic	SVA_D|Other|Other	-133939	NR_134589	105372038	Hs.722107	NR_134589	ENSG00000264151	LOC105372038	-	uncharacterized LOC105372038	ncRNA
6.17983-10	chr3	171922410	171922909	+	0	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	164315	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
0.268721-63	chr11	59051982	59052481	+	0	NA	Intergenic	Intergenic	-71737	NM_001039396	219972	Hs.744920	NM_001039396	ENSG00000197629	MPEG1	MPG1|MPS1|Mpg-1	macrophage expressed 1	protein-coding
4.36519-18	chr6	36097824	36098323	+	0	NA	promoter-TSS (NM_002754)	promoter-TSS (NM_002754)	-188	NR_072996	5603	Hs.178695	NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
0.141246-29	chr4	8593674	8594173	+	0	NA	promoter-TSS (NM_001014447)	promoter-TSS (NM_001014447)	-464	NM_003652	8532	Hs.61995	NM_003652	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
0.798767-12	chr2	198176504	198177003	+	0	NA	Intergenic	Intergenic	-1232	NM_153697	91526	Hs.432706	NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
7.69551-6	chr18	29135763	29136262	+	0	NA	non-coding (NR_045216, exon 1 of 6)	non-coding (NR_045216, exon 1 of 6)	862	NR_045216	100652770	Hs.562766	NR_045216	ENSG00000264859	DSG2-AS1	-	DSG2 antisense RNA 1	ncRNA
3.25139-9	chr11	57508625	57509124	+	0	NA	TTS (NR_037645)	TTS (NR_037645)	152	NM_170746	280636	Hs.655373	NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
10.013-6	chr13	99848987	99849486	+	0	NA	non-coding (NR_036532, exon 2 of 2)	non-coding (NR_036532, exon 2 of 2)	-3443	NM_001144072	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
0.381045-8	chr2	38917931	38918430	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	25128	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	BLOCK25|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
1.43271-35	chr11	71164129	71164628	+	0	NA	exon (NM_018161, exon 1 of 21)	exon (NM_018161, exon 1 of 21)	161	NM_018161	55191	Hs.556986	NM_018161	ENSG00000172890	NADSYN1	-	NAD synthetase 1	protein-coding
8.50781-17	chr9	134783779	134784278	+	0	NA	intron (NM_004269, intron 4 of 7)	SVA_D|Other|Other	-168697	NM_001304275	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
0.070049-76	chr3	160574157	160574656	+	0	NA	intron (NM_001317911, intron 1 of 3)	L1PA15|LINE|L1	-13980	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
4.02305-10	chrX	39871121	39871620	+	0	NA	Intergenic	Intergenic	85349	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
0.47692	chr13	91938519	91939018	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-61306	NR_027350	407975	Hs.24115	NR_027349	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
0.0612309-30	chr17	39821981	39822480	+	0	NA	Intergenic	CpG	-22897	NM_005801	10209	Hs.150580	NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
0.570004-14	chr5	176739786	176740285	+	0	NA	promoter-TSS (NM_001142935)	promoter-TSS (NM_001142935)	-743	NM_001142935	83463	Hs.743332	NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
1.50581-34	chr17	79823523	79824022	+	0	NA	Intergenic	Intergenic	5078	NM_001185077	396	Hs.159161	NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
2.51812-7	chr2	196522698	196523197	+	0	NA	intron (NM_020342, intron 1 of 9)	CpG	1095	NM_020342	57181	Hs.650158	NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2	solute carrier family 39 member 10	protein-coding
16.1798-5	chr11	15933130	15933629	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	57788	NR_106721	102464826		NR_106721	ENSG00000110693	MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
17.3993-3	chr9	71939706	71940205	+	0	NA	promoter-TSS (NM_001347995)	promoter-TSS (NM_001347995)	-271	NM_001347995	9413	Hs.118003	NM_004816	ENSG00000135063	FAM189A2	C9orf61|X123	family with sequence similarity 189 member A2	protein-coding
5.83359-4	chr6	159638538	159639037	+	0	NA	intron (NM_032532, intron 5 of 22)	intron (NM_032532, intron 5 of 22)	-47748	NR_121668	101929122	Hs.134215	NR_121668		LOC101929122	-	uncharacterized LOC101929122	ncRNA
1.43271-30	chr17	79585754	79586253	+	0	NA	intron (NM_017921, intron 3 of 16)	SVA_D|Other|Other	18176	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	NPL4 homolog, ubiquitin recognition factor	protein-coding
0.338583-11	chr14	93425423	93425922	+	0	NA	intron (NM_001142593, intron 7 of 10)	intron (NM_001142593, intron 7 of 10)	36227	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A	protein-coding
0.123337-44	chr17	18870193	18870692	+	0	NA	intron (NM_152351, intron 5 of 14)	intron (NM_152351, intron 5 of 14)	14964	NM_001270649	125206	Hs.462418	NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
0.136762-3	chr9	34454719	34455218	+	0	NA	intron (NM_001184942, intron 1 of 5)	intron (NM_001184942, intron 1 of 5)	3600	NM_001184940	203259	Hs.493771	NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
2.41845-6	chr9_gl000199_random	114603	115102	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5.157-9	chr1	25266320	25266819	+	0	NA	intron (NM_001031680, intron 1 of 5)	L3|LINE|CR1	-9799	NM_004350	864	Hs.170019	NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	runt related transcription factor 3	protein-coding
0.168249-6	chr2	160738457	160738956	+	0	NA	exon (NM_001198760, exon 7 of 38)	exon (NM_001198760, exon 7 of 38)	22561	NM_002349	4065	Hs.153563	NM_002349	ENSG00000054219	LY75	CD205|CLEC13B|DEC-205|GP200-MR6|LY-75	lymphocyte antigen 75	protein-coding
0.457575-3	chr11	129620468	129620967	+	0	NA	Intergenic	Intergenic	-64959	NM_001331212	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
4.41291-10	chr7	129845215	129845714	+	0	NA	promoter-TSS (NM_001301163)	promoter-TSS (NM_001301163)	-126	NM_001301163	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
0.5061-8	chr10	82359047	82359546	+	0	NA	intron (NM_001145719, intron 4 of 6)	intron (NM_001145719, intron 4 of 6)	58721	NM_001145719	387694	Hs.147643	NM_207372	ENSG00000178217	SH2D4B	-	SH2 domain containing 4B	protein-coding
2.18963-15	chr1	228645110	228645609	+	0	NA	promoter-TSS (NM_175055)	promoter-TSS (NM_175055)	201	NM_033445	92815	Hs.26331	NM_033445	ENSG00000181218	HIST3H2A	-	histone cluster 3 H2A	protein-coding
0.649968-38	chr15	28983144	28983643	+	0	NA	intron (NR_026589, intron 1 of 8)	CpG	664	NR_026589	440253	Hs.558967	NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2	pseudo
6.21602-2	chr1	21665095	21665594	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	6690	NM_001113348	1889	Hs.195080	NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
41.2552	chr4	31240150	31240649	+	0	NA	Intergenic	LTR1B|LTR|ERV1	67633	NR_125935	102723778	Hs.210739	NR_125935	ENSG00000251182	LOC102723778	-	uncharacterized LOC102723778	ncRNA
5.95166-10	chr20	20583969	20584468	+	0	NA	intron (NM_020343, intron 15 of 39)	MLT1H|LTR|ERVL-MaLR	109048	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding
0.76756-6	chr5	10661926	10662425	+	0	NA	Intergenic	LTR53|LTR|ERVL	97740	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
2.09012-3	chr5	68462579	68463078	+	0	NA	promoter-TSS (NM_031966)	promoter-TSS (NM_031966)	-9	NM_031966	891	Hs.23960	NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
1.6813	chr2	190896906	190897405	+	0	NA	Intergenic	LFSINE_Vert|SINE|SINE	30300	NM_005259	2660	Hs.41565	NM_005259	ENSG00000138379	MSTN	GDF8|MSLHP	myostatin	protein-coding
1.10698-6	chr14	103438827	103439326	+	0	NA	intron (NM_006035, intron 12 of 36)	AluY|SINE|Alu	50083	NM_030943	81693	Hs.534494	NM_030943	ENSG00000166126	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
1.07905-13	chr9	68725216	68725715	+	0	NA	Intergenic	Intergenic	-1001	NR_136306	102725126	Hs.231861	NR_136306		LOC102725126	-	FSHD region gene 1 pseudogene	pseudo
3.43902-15	chr16	84038993	84039492	+	0	NA	Intergenic	Intergenic	36520	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FVH2	solute carrier family 38 member 8	protein-coding
12.84-2	chr5	6582579	6583078	+	0	NA	promoter-TSS (NR_024424)	promoter-TSS (NR_024424)	-561	NR_024424	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
4.19075-4	chr6	126315806	126316305	+	0	NA	intron (NM_001031712, intron 2 of 12)	L1PA11|LINE|L1	8479	NM_001031712	60487	Hs.404186	NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
0.545314-8	chr3	149230003	149230502	+	0	NA	Intergenic	Intergenic	37884	NM_004617	7104	Hs.133527	NM_004617	ENSG00000169903	TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
3.21482-10	chr5	129188370	129188869	+	0	NA	Intergenic	Intergenic	-51904	NM_175856	337876	Hs.213137	NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
1.15771-37	chr1	225839555	225840054	+	0	NA	intron (NM_018212, intron 1 of 13)	intron (NM_018212, intron 1 of 13)	1041	NM_001008493	55740	Hs.497893	NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding
1.65579-3	chr18	46473337	46473836	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	2117	NM_001190822	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
2.66001-21	chr11	12068839	12069338	+	0	NA	intron (NR_135109, intron 1 of 1)	intron (NR_135109, intron 1 of 1)	16666	NR_135109	105376554	Hs.523483	NR_135109	ENSG00000254486	LOC105376554	-	uncharacterized LOC105376554	ncRNA
0.550241-3	chr13	42534809	42535308	+	0	NA	promoter-TSS (NR_039974)	promoter-TSS (NR_039974)	163	NM_001009814	23078	Hs.368282	NM_015058	ENSG00000102763	VWA8	KIAA0564	von Willebrand factor A domain containing 8	protein-coding
5.39102-4	chr13	19248363	19248862	+	0	NA	Intergenic	SVA_D|Other|Other	65627	NR_047508	100874164	Hs.739604	NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
0.0921731-43	chr1	6094401	6094900	+	0	NA	5' UTR (NM_001199860, exon 1 of 16)	5' UTR (NM_001199860, exon 1 of 16)	302	NM_001199860	8514	Hs.440497	NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
19.3554-6	chr13	114479153	114479652	+	0	NA	intron (NM_182614, intron 3 of 8)	intron (NM_182614, intron 3 of 8)	17186	NM_182614	348013	Hs.280805	NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
11.3608	chr16	49873069	49873568	+	0	NA	intron (NM_001271620, intron 1 of 7)	intron (NM_001271620, intron 1 of 7)	-16669	NM_015069	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
16.2893-4	chr6	15908252	15908751	+	0	NA	Intergenic	Intergenic	-220816	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
6.40165	chr13	68092902	68093401	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	146632	NR_130792	100874145	Hs.508194	NR_130792	ENSG00000230040	LINC00364	-	long intergenic non-protein coding RNA 364	ncRNA
4.27128-5	chr1	6474361	6474860	+	0	NA	TTS (NM_019089)	TTS (NM_019089)	5369	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
4.01209-8	chr11	12131792	12132291	+	0	NA	promoter-TSS (NM_001282663)	promoter-TSS (NM_001282663)	-82	NM_001346299	9645	Hs.501928	NM_014632	ENSG00000133816	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
2.18245-12	chr8	8730174	8730673	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	20708	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
0.347983-10	chr6	170101483	170101982	+	0	NA	promoter-TSS (NM_001029863)	promoter-TSS (NM_001029863)	427	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
8.60121-5	chr4	67224905	67225404	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	82612	NR_031673	100302177		NR_031673	ENSG00000221563	MIR1269A	MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a	microRNA 1269a	ncRNA
8.76148-16	chr18	67953535	67954034	+	0	NA	Intergenic	Intergenic	-2353	NM_004232	9306	Hs.44439	NM_004232	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
7.23538-8	chr4	129209049	129209548	+	0	NA	5' UTR (NM_006320, exon 1 of 3)	5' UTR (NM_006320, exon 1 of 3)	686	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
24.2597	chr1	32478947	32479446	+	0	NA	promoter-TSS (NR_073499)	promoter-TSS (NR_073499)	-99	NR_073499	10657	Hs.445893	NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
1.11821-12	chr7	141401260	141401759	+	0	NA	intron (NM_001080392, intron 1 of 8)	CpG	444	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
2.88193-8	chr6	14211138	14211637	+	0	NA	Intergenic	CpG	74298	NR_108097	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
8.60121-11	chr1	67894368	67895062	+	0	NA	intron (NM_001018067, intron 1 of 7)	intron (NM_001018067, intron 1 of 7)	1408	NM_015640	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
0.101054-22	chr9	136498312	136498811	+	0	NA	Intergenic	Intergenic	-2924	NM_000787	1621	Hs.591890	NM_000787	ENSG00000123454	DBH	DBM	dopamine beta-hydroxylase	protein-coding
0.589858-6	chr20	26189762	26190261	+	0	NA	promoter-TSS (NR_040095)	promoter-TSS (NR_040095)	-142	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
0.227338-24	chr7	130626158	130626657	+	0	NA	TTS (NR_109855)	TTS (NR_109855)	28184	NR_109780	100506860	Hs.635013	NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
1.12946-22	chr9	100746941	100747440	+	0	NA	intron (NM_006401, intron 1 of 6)	CpG	1701	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
13.4104-6	chr12	16183465	16183964	+	0	NA	intron (NM_015954, intron 6 of 8)	L2a|LINE|L2	119608	NM_001300779	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
3.44862-9	chr5	31531606	31532105	+	0	NA	promoter-TSS (NM_018356)	promoter-TSS (NM_018356)	427	NM_001100412	29102	Hs.97997	NM_013235	ENSG00000113360	DROSHA	ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN	drosha ribonuclease III	protein-coding
1.89096-11	chr3	177149558	177150057	+	0	NA	Intergenic	Intergenic	-9902	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
0.846002-6	chr15	79376656	79377155	+	0	NA	intron (NM_002891, intron 1 of 27)	intron (NM_002891, intron 1 of 27)	6310	NM_002891	5923	Hs.459035	NM_002891	ENSG00000058335	RASGRF1	CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1	Ras protein specific guanine nucleotide releasing factor 1	protein-coding
0.227338-27	chr17	27046963	27047462	+	0	NA	promoter-TSS (NR_000013)	promoter-TSS (NR_000013)	212	NM_000984	6147	Hs.419463	NM_000984	ENSG00000198242	RPL23A	L23A|MDA20	ribosomal protein L23a	protein-coding
0.409586-38	chr20	17836675	17837174	+	0	NA	Intergenic	Intergenic	106665	NR_003045	692086	Hs.680747	NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
1.72631-12	chr11	49932631	49933130	+	0	NA	Intergenic	SVA_B|Other|Other	-41063	NM_001001955	283092	Hs.553668	NM_001001955	ENSG00000258817	OR4C13	-	olfactory receptor family 4 subfamily C member 13	protein-coding
2.05512-20	chr1	8064657	8065156	+	0	NA	Intergenic	Intergenic	21487	NM_018948	54206	Hs.605445	NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
1.11821-19	chr1	10020773	10021272	+	0	NA	intron (NM_022787, intron 1 of 4)	intron (NM_022787, intron 1 of 4)	-6417	NR_049882	100847055		NR_049882	ENSG00000265521	MIR5697	-	microRNA 5697	ncRNA
3.39135-14	chr1	208001800	208002299	+	0	NA	Intergenic	Intergenic	-6001	NR_135298	100128537	Hs.445414	NR_135298		C1orf132	-	chromosome 1 open reading frame 132	ncRNA
0.296531-20	chr7	105649808	105650307	+	0	NA	intron (NM_152750, intron 8 of 18)	CpG	46400	NM_152750	222256	Hs.150120	NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
3.64516-4	chr1	64169159	64169658	+	0	NA	Intergenic	Intergenic	-70282	NM_005012	4919	Hs.128753	NM_005012	ENSG00000185483	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase like orphan receptor 1	protein-coding
0.877779-13	chr20	23917877	23918376	+	0	NA	Intergenic	Intergenic	49386	NM_178312	92086	Hs.355394	NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
1.16907-9	chr20	17057414	17057913	+	0	NA	Intergenic	MIR|SINE|MIR	-149089	NM_001201528	5126	Hs.315186	NM_002594	ENSG00000125851	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
0.670192-7	chr1	20820741	20821240	+	0	NA	Intergenic	Intergenic	-8262	NM_018584	55450	Hs.731383	NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
3.49692-12	chr6	43395083	43396011	+	0	NA	intron (NM_001198934, intron 1 of 21)	CpG	255	NM_001198934	89845	Hs.55879	NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
12.84-6	chr1	38679280	38679779	+	0	NA	intron (NR_038928, intron 1 of 3)	intron (NR_038928, intron 1 of 3)	910	NR_038928	339442	Hs.434245	NR_038928	ENSG00000237290	LINC01343	-	long intergenic non-protein coding RNA 1343	ncRNA
2.8735-9	chr12	90278119	90278618	+	0	NA	Intergenic	Intergenic	-63102	NR_135019	105369891	Hs.148998	NR_135019	ENSG00000257725	LOC105369891	-	uncharacterized LOC105369891	ncRNA
0.0392635-10	chr6	106475520	106476019	+	0	NA	Intergenic	Intergenic	-58426	NM_001198	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
0.123337-20	chr1	57890101	57890600	+	0	NA	intron (NM_021080, intron 3 of 16)	CpG	-435865	NR_104365	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
9.0309-11	chr8	94752714	94753213	+	0	NA	TTS (NR_027259)	TTS (NR_027259)	261	NM_203390	389677	Hs.606916	NM_203390	ENSG00000183808	RBM12B	MGC:33837	RNA binding motif protein 12B	protein-coding
0.172766-3	chr1	230896101	230896600	+	0	NA	intron (NM_006615, intron 3 of 19)	intron (NM_006615, intron 3 of 19)	13220	NM_006615	10753	Hs.498021	NM_006615	ENSG00000135773	CAPN9	GC36|nCL-4	calpain 9	protein-coding
4.08935-13	chr12	27397076	27397575	+	0	NA	intron (NM_015000, intron 1 of 13)	CpG	247	NM_015000	23012	Hs.184523	NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
1.74574-3	chr11	1404265	1404764	+	0	NA	Intergenic	CpG	-6615	NM_001256629	9024	Hs.170819	NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
0.231917-20	chr7	107531317	107531816	+	0	NA	promoter-TSS (NM_001289752)	promoter-TSS (NM_001289752)	14	NM_001289751	1738	Hs.131711	NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|PHE3	dihydrolipoamide dehydrogenase	protein-coding
1.02373-20	chr6	105307090	105307589	+	0	NA	promoter-TSS (NM_001321083)	promoter-TSS (NM_001321083)	82	NM_001321083	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
1.37869-46	chr3	197183283	197183782	+	0	NA	Intergenic	CpG	99326	NM_004051	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
23.0892	chr2	187686946	187687445	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	26702	NM_182521	151112	Hs.375054	NM_182521	ENSG00000163012	ZSWIM2	MEX|ZZZ2	zinc finger SWIM-type containing 2	protein-coding
1.42668-2	chr8	7281703	7282202	+	0	NA	Intergenic	Intergenic	5918	NM_001081551	414325	Hs.283082	NM_001081551	ENSG00000176797	DEFB103A	BD-3|DEFB-3|DEFB103|DEFB3|HBD3|HBP-3|HBP3|hBD-3	defensin beta 103A	protein-coding
13.3536	chr1	39325263	39325762	+	0	NA	promoter-TSS (NM_022157)	promoter-TSS (NM_022157)	-17	NM_001271851	64121	Hs.532461	NM_022157	ENSG00000116954	RRAGC	GTR2|RAGC|TIB929	Ras related GTP binding C	protein-coding
4.55932-3	chr2	207695197	207695696	+	0	NA	Intergenic	Intergenic	-47414	NR_036077	100422993		NR_036077	ENSG00000283469	MIR3130-1	MIR3130-3|mir-3130-1	microRNA 3130-1	ncRNA
5.9176-5	chr12	105116544	105117043	+	0	NA	intron (NM_001173982, intron 2 of 2)	intron (NM_001173982, intron 2 of 2)	131382	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
14.8812-3	chr13	34519583	34520082	+	0	NA	intron (NM_181558, intron 8 of 8)	intron (NM_181558, intron 8 of 8)	127626	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
0.594835-10	chr2	45396043	45396542	+	0	NA	Intergenic	CpG	85788	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA
2.97569-17	chr16	56882741	56883240	+	0	NA	Intergenic	Intergenic	-9440	NR_029680	406930		NR_029680	ENSG00000207649	MIR138-2	MIRN138-2|mir-138-2	microRNA 138-2	ncRNA
14.389	chr6	81212435	81212934	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	396357	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
0.209071-6	chr6	155635897	155636396	+	0	NA	promoter-TSS (NM_016020)	promoter-TSS (NM_016020)	-529	NM_016020	51106	Hs.279908	NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
0.584886-15	chr8	28480470	28480969	+	0	NA	Intergenic	CpG	78262	NR_126027	101929402	Hs.667366	NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
2.72459-5	chr7	127033018	127033517	+	0	NA	promoter-TSS (NM_176814)	promoter-TSS (NM_176814)	-489	NM_176814	168850	Hs.159006	NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
2.78189-10	chr7	1914912	1915411	+	0	NA	intron (NM_001013836, intron 18 of 18)	intron (NM_001013836, intron 18 of 18)	-31272	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
0.777937-14	chr5	1869496	1869995	+	0	NA	Intergenic	Intergenic	-13063	NR_104602	101929034	Hs.128032	NR_104602	ENSG00000250417	LINC02116	-	long intergenic non-protein coding RNA 2116	ncRNA
1.66853-6	chr8	145596331	145596830	+	0	NA	promoter-TSS (NR_134307)	promoter-TSS (NR_134307)	68	NR_134307	101928902	Hs.529758	NR_134307		LOC101928902	-	uncharacterized LOC101928902	ncRNA
1.44481-11	chr3	58518346	58518845	+	0	NA	intron (NM_003500, intron 5 of 14)	intron (NM_003500, intron 5 of 14)	4334	NM_003500	8309	Hs.444959	NM_003500	ENSG00000168306	ACOX2	BCOX|BRCACOX|BRCOX|THCCox	acyl-CoA oxidase 2	protein-coding
0.0261362-46	chr19	56631529	56632028	+	0	NA	intron (NM_001002836, intron 1 of 3)	CpG	964	NM_001002836	126208	Hs.397153	NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
4.36519-2	chr22	50624076	50624575	+	0	NA	promoter-TSS (NM_001320485)	promoter-TSS (NM_001320485)	-16	NR_135275	80305	Hs.517731	NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
0.366845-8	chr14	91844535	91845034	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	39404	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
0.920515-19	chr17	30952893	30953392	+	0	NA	intron (NM_001303279, intron 20 of 21)	L2c|LINE|L2	139037	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
0.419142-5	chr4	57276358	57276857	+	0	NA	intron (NM_002703, intron 1 of 10)	intron (NM_002703, intron 1 of 10)	-22933	NM_001286672	132949	Hs.104347	NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
13.1876-2	chr2	202122885	202123384	+	0	NA	intron (NM_001080125, intron 1 of 8)	intron (NM_001080125, intron 1 of 8)	380	NM_001080125	841	Hs.599762	NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
0.428718-34	chr2	2329716	2330215	+	0	NA	promoter-TSS (NM_001329852)	promoter-TSS (NM_001329852)	1	NM_001329852	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
23.5853	chr7	22539610	22540109	+	0	NA	promoter-TSS (NM_207342)	promoter-TSS (NM_207342)	42	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
1.73277-5	chr1	113008675	113009174	+	0	NA	promoter-TSS (NM_004185)	promoter-TSS (NM_004185)	-239	NM_001291880	7482	Hs.258575	NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
1.0902-3	chr19	51017713	51018212	+	0	NA	promoter-TSS (NM_001114598)	promoter-TSS (NM_001114598)	-15	NM_001024656	554235	Hs.436338	NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
0.80399-6	chr5	53813553	53814052	+	0	NA	exon (NM_052870, exon 1 of 1)	exon (NM_052870, exon 1 of 1)	209	NM_052870	112574	Hs.432755	NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
1.26098	chr1	89458403	89458902	+	0	NA	promoter-TSS (NM_001162536)	promoter-TSS (NM_001162536)	-9	NM_019610	494115	Hs.481898	NM_019610	ENSG00000213516	RBMXL1	RBM1	RNA binding motif protein, X-linked like 1	protein-coding
1.53663-2	chr12	69139664	69140163	+	0	NA	promoter-TSS (NM_018656)	promoter-TSS (NM_018656)	-23	NM_018656	55508	Hs.506011	NM_018656	ENSG00000175782	SLC35E3	BLOV1	solute carrier family 35 member E3	protein-coding
0.268721-16	chr11	74910140	74910639	+	0	NA	intron (NM_001145211, intron 10 of 13)	intron (NM_001145211, intron 10 of 13)	39545	NM_001145211	11309	Hs.7884	NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
0.741724-6	chr8	136596114	136596613	+	0	NA	intron (NM_006558, intron 6 of 8)	intron (NM_006558, intron 6 of 8)	126655	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
5.18557	chr5	101233510	101234009	+	0	NA	Intergenic	Intergenic	398494	NM_180991	353189	Hs.127648	NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
1.34896	chr6	139612995	139613494	+	0	NA	promoter-TSS (NM_153235)	promoter-TSS (NM_153235)	-36	NM_153235	167838	Hs.535820	NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
2.88193-21	chr2	25108237	25108736	+	0	NA	intron (NM_004036, intron 2 of 21)	L2b|LINE|L2	34400	NM_001320613	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC-III|AC3	adenylate cyclase 3	protein-coding
0.127808-39	chr10	35053275	35053774	+	0	NA	intron (NM_001184785, intron 1 of 24)	L1MC5|LINE|L1	50729	NM_001184789	56288	Hs.131489	NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
0.390538-7	chr13	21872579	21873078	+	0	NA	intron (NR_046461, intron 1 of 4)	intron (NR_046461, intron 1 of 4)	564	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	-	mitochondrial intermediate peptidase pseudogene 3	pseudo
12.4413	chr10	127600512	127601011	+	0	NA	intron (NM_145235, intron 1 of 10)	intron (NM_145235, intron 1 of 10)	15653	NM_145235	92565	Hs.352591	NM_145235	ENSG00000203780	FANK1	HSD13	fibronectin type III and ankyrin repeat domains 1	protein-coding
0.177288-17	chr5	31186703	31187202	+	0	NA	Intergenic	Intergenic	-6810	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
0.624821-19	chr1	242135911	242136410	+	0	NA	Intergenic	Intergenic	15091	NM_001290693	441925	Hs.731347	NM_001290693	ENSG00000196289	BECN2	BECN1L1|BECN1P1	beclin 2	protein-coding
6.51695-12	chr17	62777356	62777855	+	0	NA	promoter-TSS (NR_027487)	promoter-TSS (NR_027487)	17	NR_027487	146880	Hs.117853	NR_027487	ENSG00000215769	ARHGAP27P1	-	Rho GTPase activating protein 27 pseudogene 1	pseudo
0.141246-13	chr19	54974657	54975652	+	0	NA	promoter-TSS (NM_001301782)	promoter-TSS (NM_001301782)	-260	NM_001301782	94059	Hs.590976	NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
0.419142-32	chr2	44471156	44471655	+	0	NA	Intergenic	Intergenic	-31192	NM_000341	6519	Hs.112916	NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
14.2022	chr4	140098252	140098751	+	0	NA	promoter-TSS (NM_001331036)	promoter-TSS (NM_001331036)	-129	NM_001331036	1998	Hs.634040	NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
6.43974-5	chr8	54163088	54163587	+	0	NA	intron (NM_001282904, intron 2 of 4)	CpG	920	NM_001282904	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
0.788339-21	chr4	91824571	91825070	+	0	NA	intron (NM_001145065, intron 8 of 10)	intron (NM_001145065, intron 8 of 10)	668638	NM_207491	401145	Hs.654735	NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding
1.07349-18	chr20	23338607	23339106	+	0	NA	promoter-TSS (NR_109884)	promoter-TSS (NR_109884)	-92	NR_109884	100505683	Hs.140295	NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA
1.06238-5	chr9	136579838	136580337	+	0	NA	intron (NM_001134707, intron 8 of 20)	intron (NM_001134707, intron 8 of 20)	23392	NM_001134707	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
0.241089-14	chr2	211340362	211340861	+	0	NA	intron (NM_001136575, intron 2 of 9)	intron (NM_001136575, intron 2 of 9)	818	NM_001136574	10314	Hs.13351	NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like 1	protein-coding
7.28158-8	chr1	10796686	10797185	+	0	NA	intron (NM_017766, intron 2 of 15)	intron (NM_017766, intron 2 of 15)	59798	NM_017766	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
0.0744648-16	chr6	170574691	170575190	+	0	NA	TTS (NR_126021)	TTS (NR_126021)	-3283	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
9.95679-6	chr18	3595416	3595915	+	0	NA	intron (NR_024101, intron 2 of 2)	intron (NR_024101, intron 2 of 2)	1553	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
7.37549-18	chr9	66706990	66707489	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-153328	NR_122077	403323	Hs.646340	NM_203449		LOC403323	-	uncharacterized LOC403323	ncRNA
2.73273-3	chr20	52749221	52749720	+	0	NA	Intergenic	Intergenic	41046	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|HCINF1|P450-CC24	cytochrome P450 family 24 subfamily A member 1	protein-coding
24.034-6	chr8	16668305	16668804	+	0	NA	Intergenic	Intergenic	191120	NM_019851	26281	Hs.199905	NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
1.63676-8	chr16	71323080	71323579	+	0	NA	promoter-TSS (NM_001324378)	promoter-TSS (NM_001324378)	1	NM_001324378	55783	Hs.72782	NM_018348	ENSG00000180917	CMTR2	AFT|FTSJD1|HMTr2|MTr2	cap methyltransferase 2	protein-coding
3.58526-7	chr4	109571434	109571933	+	0	NA	promoter-TSS (NM_001267817)	promoter-TSS (NM_001267817)	-58	NM_021227	58505	Hs.445803	NM_021227	ENSG00000198856	OSTC	DC2	oligosaccharyltransferase complex non-catalytic subunit	protein-coding
1.07905-26	chr18	12420168	12420667	+	0	NA	exon (NM_001142405, exon 2 of 7)	exon (NM_001142405, exon 2 of 7)	229	NM_001142406	10650	Hs.514718	NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
0.0877392-37	chr3	57040377	57040876	+	0	NA	intron (NM_001128615, intron 2 of 12)	intron (NM_001128615, intron 2 of 12)	-53843	NM_181727	353324	Hs.129794	NM_181727	ENSG00000186451	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
1.19758-4	chr12	56122701	56123200	+	0	NA	promoter-TSS (NM_001257392)	promoter-TSS (NM_001257392)	-28	NM_001780	967	Hs.445570	NM_001780	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
0.655015-4	chr3	38388015	38388751	+	0	NA	exon (NM_005108, exon 1 of 19)	exon (NM_005108, exon 1 of 19)	132	NM_005108	9942	Hs.659985	NM_005108	ENSG00000093217	XYLB	-	xylulokinase	protein-coding
2.99296-11	chr11	127510834	127511333	+	0	NA	Intergenic	Intergenic	370118	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
0.181814-13	chrX	13956233	13956732	+	0	NA	intron (NM_001318729, intron 1 of 6)	CpG	461	NM_001001994	2824	Hs.495710	NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
3.83-13	chr20	57464091	57464590	+	0	NA	promoter-TSS (NR_126334)	promoter-TSS (NR_126334)	160	NM_001309840	2778	Hs.125898	NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|POH|SCG6|SgVI	GNAS complex locus	protein-coding
2.66001-14	chr14	91580204	91580703	+	0	NA	promoter-TSS (NM_001286473)	promoter-TSS (NM_001286473)	96	NM_001102366	80017	Hs.309849	NM_024952	ENSG00000133943	C14orf159	-	chromosome 14 open reading frame 159	protein-coding
0.872467-2	chr7	143579699	143580198	+	0	NA	intron (NM_001206938, intron 1 of 8)	intron (NM_001206938, intron 1 of 8)	2518	NM_001206941	9747	Hs.735149	NM_014719	ENSG00000198420	TCAF1	FAM115A	TRPM8 channel associated factor 1	protein-coding
22.0482	chr1	208489605	208490104	+	0	NA	Intergenic	Intergenic	-72189	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
11.8243-2	chr7	24540202	24540701	+	0	NA	Intergenic	Intergenic	-72514	NM_016447	51678	Hs.533355	NM_016447	ENSG00000105926	MPP6	PALS2|VAM-1|VAM1|p55T	membrane palmitoylated protein 6	protein-coding
3.75718-10	chr9	100565587	100566425	+	0	NA	Intergenic	CpG	-49531	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
4.92144-5	chr2	50763229	50763728	+	0	NA	intron (NM_001135659, intron 11 of 23)	intron (NM_001135659, intron 11 of 23)	159922	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA
0.145735-25	chr5	135265655	135266154	+	0	NA	promoter-TSS (NM_012159)	promoter-TSS (NM_012159)	-102	NM_012159	26223	Hs.591275	NM_012159		FBXL21	FBL3B|FBXL3B|FBXL3P|Fbl21	F-box and leucine rich repeat protein 21 (gene/pseudogene)	protein-coding
0.990869-23	chr15	50647054	50647949	+	0	NA	promoter-TSS (NR_026891)	promoter-TSS (NR_026891)	104	NM_016654	2553	Hs.654350	NM_002041	ENSG00000104064	GABPB1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB-1|GABPB2|NRF2B1|NRF2B2	GA binding protein transcription factor beta subunit 1	protein-coding
20.7779	chr15	57798067	57798566	+	0	NA	intron (NM_001252335, intron 9 of 19)	intron (NM_001252335, intron 9 of 19)	-85786	NR_104369	145781	Hs.437256	NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
1.10698-2	chr2	95742378	95742877	+	0	NA	Intergenic	CpG	44675	NM_001321995	64969	Hs.655259	NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt	mitochondrial ribosomal protein S5	protein-coding
11.6622-6	chr6	114429458	114429957	+	0	NA	intron (NR_125845, intron 5 of 9)	LTR41|LTR|ERVL	-45666	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate-glucosamine 3-sulfotransferase 5	protein-coding
2.35077-7	chrX	95939484	95939983	+	0	NA	promoter-TSS (NM_006729)	promoter-TSS (NM_006729)	71	NM_006729	1730	Hs.226483	NM_006729	ENSG00000147202	DIAPH2	DIA|DIA2|DRF2|POF|POF2	diaphanous related formin 2	protein-coding
3.68556	chr11	66725802	66726301	+	0	NA	promoter-TSS (NM_000920)	promoter-TSS (NM_000920)	-204	NM_001040716	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
0.0877392-13	chr4	62116782	62117281	+	0	NA	intron (NM_015236, intron 1 of 24)	MLT1G|LTR|ERVL-MaLR	50057	NM_001322246	23284	Hs.28391	NM_015236	ENSG00000150471	ADGRL3	CIRL3|CL3|LEC3|LPHN3	adhesion G protein-coupled receptor L3	protein-coding
2.32102-10	chr2	220134072	220134571	+	0	NA	intron (NR_003063, intron 2 of 3)	intron (NR_003063, intron 2 of 3)	-9719	NM_006736	3300	Hs.77768	NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
9.62574-24	chr8	138749976	138750475	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-324394	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
0.0305075-16	chr12	66459965	66460464	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	-42708	NR_106722	102464827		NR_106722	ENSG00000276878	MIR6074	hsa-mir-6074	microRNA 6074	ncRNA
0.222764-19	chr3	9321546	9322045	+	0	NA	Intergenic	X3_LINE|LINE|RTE-BovB	-30426	NM_001033117	9901	Hs.654743	NM_014850	ENSG00000196220	SRGAP3	ARHGAP14|MEGAP|SRGAP2|WRP	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
3.30683	chr2	85968909	85969408	+	0	NA	Intergenic	Intergenic	-11751	NM_032827	84913	Hs.135569	NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
0.301184-10	chr1	117129407	117129906	+	0	NA	intron (NM_001007237, intron 8 of 10)	L3|LINE|CR1	-15941	NR_026665	965	Hs.34341	NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
11.0073-4	chr13	86142011	86142510	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	204522	NR_046989	100874137	Hs.742643	NR_046989	ENSG00000226317	LINC00351	-	long intergenic non-protein coding RNA 351	ncRNA
0.851282-17	chr6	130127122	130127621	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	55045	NM_001010876	253582	Hs.448372	NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
1.18045-12	chr9	132258092	132258591	+	0	NA	intron (NR_038955, intron 2 of 4)	CpG	7402	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
5.18557-2	chr15	61567983	61568482	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	-46730	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
2.0621-8	chr18	74162808	74163307	+	0	NA	intron (NM_014643, intron 2 of 7)	intron (NM_014643, intron 2 of 7)	-40551	NR_136504	101927989	Hs.665186	NR_136504	ENSG00000265778	LOC101927989	-	uncharacterized LOC101927989	ncRNA
3.44862-11	chr3	188664786	188665285	+	0	NA	intron (NR_046873, intron 1 of 1)	intron (NR_046873, intron 1 of 1)	393	NR_046873	100874043	Hs.616287	NR_046873	ENSG00000234076	TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
3.44862-8	chr1	6063746	6064245	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-11462	NM_001291593	261734	Hs.462348	NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
29.914	chr5	5490813	5491312	+	0	NA	TTS (NM_015325)	TTS (NM_015325)	68276	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
24.51	chr7	18939775	18940274	+	0	NA	intron (NM_178425, intron 21 of 24)	intron (NM_178425, intron 21 of 24)	217271	NM_000474	7291	Hs.66744	NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
3.63512-5	chr11	115169289	115169788	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	-34758	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
1.15771-26	chr2	161294759	161295258	+	0	NA	intron (NM_002897, intron 1 of 13)	SVA_D|Other|Other	-30615	NR_039946	100616364		NR_039946	ENSG00000153250	MIR4785	mir-4785	microRNA 4785	ncRNA
4.19075-17	chr1	235490335	235490834	+	0	NA	5' UTR (NM_001206794, exon 1 of 24)	5' UTR (NM_001206794, exon 1 of 24)	218	NM_001206794	51742	Hs.575782	NM_016374	ENSG00000054267	ARID4B	BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180	AT-rich interaction domain 4B	protein-coding
0.245682-23	chr9	134680177	134680676	+	0	NA	Intergenic	Intergenic	-65095	NM_001304275	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
9.24453-5	chr11	10401359	10401858	+	0	NA	intron (NR_103765, intron 2 of 3)	MamRep605|Unknown|Unknown	-70260	NM_001172431	272	Hs.501890	NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
0.172766-16	chr14	56046463	56047049	+	0	NA	promoter-TSS (NM_001079522)	promoter-TSS (NM_001079522)	54	NR_027123	100129075	Hs.633724	NR_027123	ENSG00000186615	KTN1-AS1	C14orf33|MYCLo-3	KTN1 antisense RNA 1	ncRNA
1.54902-15	chr2	87034509	87035008	+	0	NA	5' UTR (NM_001145873, exon 2 of 9)	5' UTR (NM_001145873, exon 2 of 9)	761	NM_001145873	925	Hs.85258	NM_001768	ENSG00000153563	CD8A	CD8|Leu2|MAL|p32	CD8a molecule	protein-coding
1.98596-6	chr11	66511835	66512334	+	0	NA	promoter-TSS (NM_024650)	promoter-TSS (NM_024650)	-123	NM_001302084	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	TOP6BL|TOPOVIBL	chromosome 11 open reading frame 80	protein-coding
11.6749	chr2	2870239	2870738	+	0	NA	Intergenic	Intergenic	259310	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
16.1979-3	chrX	40605654	40606153	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-11099	NM_004229	9282	Hs.407604	NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
2.89883-22	chr4	8230180	8230679	+	0	NA	intron (NR_134639, intron 10 of 14)	intron (NR_134639, intron 10 of 14)	29458	NM_001318480	54436	Hs.479116	NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
19.5468-3	chr17	20466334	20466833	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-16454	NM_001190790	256223	Hs.131916	NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15-like 2	protein-coding
2.02732-12	chr6	65215181	65215680	+	0	NA	intron (NM_001292009, intron 26 of 43)	intron (NM_001292009, intron 26 of 43)	-795881	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
13.0627	chr3	78543732	78544231	+	0	NA	Intergenic	Intergenic	524628	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding
0.0305075-22	chr2	183387782	183388281	+	0	NA	promoter-TSS (NM_005019)	promoter-TSS (NM_005019)	-459	NM_001003683	5136	Hs.191046	NM_005019	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A	protein-coding
1.10698-16	chr11	35843334	35843833	+	0	NA	Intergenic	Intergenic	-121948	NM_174902	143458	Hs.745134	NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
6.42065-5	chr1	219496638	219497137	+	0	NA	Intergenic	Intergenic	148576	NM_001300772	127018	Hs.657617	NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
1.01275-6	chr1	41967260	41967759	+	0	NA	Intergenic	Intergenic	-17155	NM_001302269	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
3.38187-4	chr6	14450303	14450802	+	0	NA	Intergenic	Intergenic	-164867	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
6.73664-4	chr17	62926125	62926624	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10776	NM_199340	374819	Hs.551962	NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
0.76756-20	chr5	10288344	10288843	+	0	NA	exon (NM_138809, exon 3 of 6)	exon (NM_138809, exon 3 of 6)	19575	NM_138809	134147	Hs.192586	NM_138809	ENSG00000164237	CMBL	JS-1	carboxymethylenebutenolidase homolog	protein-coding
0.570004-12	chr1	149204184	149204683	+	0	NA	Intergenic	Intergenic	-82697	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
2.88193-10	chr12	65511402	65511901	+	0	NA	intron (NM_007191, intron 2 of 9)	MER1A|DNA|hAT-Charlie	3695	NM_007191	11197	Hs.284122	NM_007191	ENSG00000156076	WIF1	WIF-1	WNT inhibitory factor 1	protein-coding
0.819697-6	chr22	43843242	43843741	+	0	NA	intron (NM_001044370, intron 3 of 6)	intron (NM_001044370, intron 3 of 6)	35471	NM_001044370	758	Hs.159538	NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding
6.45892-8	chr5	8189211	8189710	+	0	NA	Intergenic	Intergenic	268217	NR_039984	729506	Hs.566412	NR_039984	ENSG00000245729	LOC729506	-	uncharacterized LOC729506	ncRNA
0.118872-60	chr14	105809482	105809981	+	0	NA	intron (NM_015197, intron 1 of 23)	L1ME1|LINE|L1	-27817	NM_001242787	2972	Hs.424484	NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1, RNA polymerase III transcription initiation factor subunit	protein-coding
1.83096-8	chr13	114968978	114969477	+	0	NA	Intergenic	MER61C|LTR|ERV1	-31093	NM_003903	8881	Hs.374127	NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
1.07349-15	chr2	68547062	68547561	+	0	NA	promoter-TSS (NM_001111101)	promoter-TSS (NM_001111101)	-128	NM_015463	25927	Hs.212885	NM_015463	ENSG00000119865	CNRIP1	C2orf32|CRIP1	cannabinoid receptor interacting protein 1	protein-coding
8.35647-5	chr6	3312642	3313141	+	0	NA	intron (NM_001286455, intron 4 of 9)	intron (NM_001286455, intron 4 of 9)	53729	NM_001128592	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
0.254883-14	chr2	119926601	119927100	+	0	NA	Intergenic	Intergenic	-10379	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	complement C1q like 2	protein-coding
1.20331-4	chr21	33983762	33984261	+	0	NA	intron (NM_021254, intron 1 of 6)	intron (NM_021254, intron 1 of 6)	902	NR_036552	56683	Hs.5811	NM_017835	ENSG00000159079	C21orf59	C21orf48|CILD26|FBB18|Kur	chromosome 21 open reading frame 59	protein-coding
0.0392635-15	chr2	223572827	223573326	+	0	NA	intron (NM_058165, intron 5 of 5)	AluSx1|SINE|Alu	36619	NM_058165	116255	Hs.344090	NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
17.167-5	chr3	174801901	174802400	+	0	NA	intron (NR_046390, intron 2 of 3)	MLT1H1|LTR|ERVL-MaLR	30882	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
1.15205-4	chr1	1440238	1440737	+	0	NA	Intergenic	LTR13|LTR|ERVK	-7036	NM_001170535	55210	Hs.23413	NM_018188	ENSG00000197785	ATAD3A	HAYOS	ATPase family, AAA domain containing 3A	protein-coding
12.4718-4	chr5	54179171	54179670	+	0	NA	Intergenic	CpG	101994	NM_007036	11082	Hs.129944	NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
17.5696-5	chr7	126198878	126199377	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	499111	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
0.990869-2	chr3	59801965	59802464	+	0	NA	intron (NM_002012, intron 8 of 9)	intron (NM_002012, intron 8 of 9)	264639	NM_001320901	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
2.05512-22	chr7	5776715	5777214	+	0	NA	intron (NM_207111, intron 5 of 16)	SVA_C|Other|Other	-25423	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
2.82329-26	chr6	91798150	91798649	+	0	NA	Intergenic	Intergenic	-432979	NR_039786	100616174		NR_039786	ENSG00000263734	MIR4643	-	microRNA 4643	ncRNA
2.44125-5	chr4	42399990	42400489	+	0	NA	exon (NM_001080505, exon 1 of 2)	exon (NM_001080505, exon 1 of 2)	383	NM_001080505	152573	Hs.370904	NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
2.0204-14	chr6	129143301	129143800	+	0	NA	Intergenic	L1M4|LINE|L1	-60736	NM_000426	3908	Hs.200841	NM_000426	ENSG00000196569	LAMA2	LAMM	laminin subunit alpha 2	protein-coding
3.31614	chr9	139085217	139085716	+	0	NA	Intergenic	CpG	9553	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
10.4335-2	chr6	87811867	87812366	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-7251	NM_001252383	1081	Hs.119689	NM_000735	ENSG00000135346	CGA	CG-ALPHA|FSHA|GPHA1|GPHa|HCG|LHA|TSHA	glycoprotein hormones, alpha polypeptide	protein-coding
0.163737-25	chr9	25964120	25964619	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-102304	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
1.30768-3	chr4	77172181	77172680	+	0	NA	promoter-TSS (NM_001136570)	promoter-TSS (NM_001136570)	-423	NM_001136570	100129583	Hs.720509	NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
3.85103-28	chr3	47517251	47517750	+	0	NA	promoter-TSS (NM_001320044)	promoter-TSS (NM_001320044)	-51	NM_001320044	22937	Hs.531789	NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
34.0671	chr3	155755127	155755626	+	0	NA	Intergenic	Intergenic	-82961	NM_001308217	7881	Hs.654519	NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A member regulatory beta subunit 1	protein-coding
20.4866-3	chr1	53611696	53612195	+	0	NA	Intergenic	Intergenic	-3641	NM_001287595	6512	Hs.104637	NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
6.92504-5	chr8	61614471	61614970	+	0	NA	intron (NM_017780, intron 1 of 37)	MIRb|SINE|MIR	23396	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
12.993-4	chr4	173967952	173968451	+	0	NA	Intergenic	Intergenic	-121703	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
0.132283-37	chr13	30168832	30169331	+	0	NA	intron (NM_003045, intron 1 of 12)	CpG	744	NM_003045	6541	Hs.14846	NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
0.0568285-17	chr2	232433616	232434115	+	0	NA	Intergenic	Intergenic	-23710	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
0.0436481-29	chr8	35093767	35094266	+	0	NA	intron (NM_080872, intron 1 of 16)	CpG	1041	NM_080872	137970	Hs.238889	NM_080872	ENSG00000156687	UNC5D	PRO34692|Unc5h4	unc-5 netrin receptor D	protein-coding
2.21849-6	chr4	184319486	184319985	+	0	NA	Intergenic	CpG	-46009	NM_017632	55602	Hs.592508	NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
3.85103-25	chr1	11322472	11322971	+	0	NA	promoter-TSS (NM_004958)	promoter-TSS (NM_004958)	-113	NM_004958	2475	Hs.338207	NM_004958	ENSG00000198793	MTOR	FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS	mechanistic target of rapamycin	protein-coding
0.462403-2	chr9	114658434	114658933	+	0	NA	promoter-TSS (NM_003358)	promoter-TSS (NM_003358)	-363	NM_003358	7357	Hs.304249	NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
0.496351-43	chr2	233305164	233305663	+	0	NA	Intergenic	Intergenic	-15409	NM_001631	248	Hs.37009	NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
0.291884-8	chr9	71994281	71994780	+	0	NA	intron (NM_004816, intron 6 of 10)	intron (NM_004816, intron 6 of 10)	50289	NM_004816	9413	Hs.118003	NM_004816	ENSG00000135063	FAM189A2	C9orf61|X123	family with sequence similarity 189 member A2	protein-coding
0.254883-40	chr11	46938259	46938758	+	0	NA	intron (NM_002334, intron 1 of 37)	intron (NM_002334, intron 1 of 37)	1665	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
2.48721-21	chr10	81918253	81918752	+	0	NA	intron (NM_001278409, intron 14 of 16)	intron (NM_001278409, intron 14 of 16)	26244	NM_001012973	219348	Hs.204947	NM_001012973	ENSG00000189129	PLAC9	-	placenta specific 9	protein-coding
1.29596-7	chr11	115452443	115452942	+	0	NA	Intergenic	Tigger9b|DNA|TcMar-Tigger	-77451	NM_001301045	23705	Hs.370510	NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
8.69666-13	chr6	90848454	90848953	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	157924	NM_001170794	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
0.127808-3	chr7	2182950	2183449	+	0	NA	intron (NM_001013836, intron 11 of 18)	intron (NM_001013836, intron 11 of 18)	89384	NM_001013836	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
7.56962-7	chr3	27528641	27529140	+	0	NA	Intergenic	Intergenic	-2979	NR_135543	9497	Hs.250072	NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
21.6052	chr7	105234486	105234985	+	0	NA	Intergenic	Intergenic	-12759	NR_027068	100130771	Hs.719432	NR_027068	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	ncRNA
35.376-3	chr3	119357607	119358106	+	0	NA	Intergenic	Intergenic	21581	NM_001308333	64091	Hs.534383	NM_022135	ENSG00000121577	POPDC2	POP2	popeye domain containing 2	protein-coding
5.43634	chr2	129079258	129079757	+	0	NA	Intergenic	Intergenic	-3336	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
1.10698-4	chr18	21320370	21320869	+	0	NA	intron (NM_001127717, intron 2 of 73)	intron (NM_001127717, intron 2 of 73)	51212	NR_130106	3909	Hs.436367	NM_000227	ENSG00000053747	LAMA3	BM600|E170|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
0.310503-15	chr3	184870406	184870905	+	0	NA	5' UTR (NM_001025266, exon 1 of 2)	5' UTR (NM_001025266, exon 1 of 2)	147	NM_001025266	285382	Hs.380048	NM_001025266	ENSG00000187068	C3orf70	-	chromosome 3 open reading frame 70	protein-coding
2.03426-8	chr13	30423826	30424325	+	0	NA	5' UTR (NM_007106, exon 1 of 5)	5' UTR (NM_007106, exon 1 of 5)	745	NM_007106	5412	Hs.145575	NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
0.357404-17	chr1	206804323	206804822	+	0	NA	Intergenic	Intergenic	-4309	NM_001004023	8444	Hs.164267	NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
2.55707-6	chr7	135397032	135397531	+	0	NA	intron (NM_012450, intron 2 of 15)	MIR|SINE|MIR	15671	NM_001318192	26266	Hs.490241	NM_012450	ENSG00000164707	SLC13A4	NAS2|SUT-1|SUT1	solute carrier family 13 member 4	protein-coding
2.43364-18	chr1	16471499	16471998	+	0	NA	intron (NM_001329090, intron 2 of 15)	intron (NM_001329090, intron 2 of 15)	10856	NM_001329090	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
4.32974-5	chr4	8158321	8158820	+	0	NA	intron (NM_001130083, intron 1 of 20)	intron (NM_001130083, intron 1 of 20)	1989	NM_001130085	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
11.5243-2	chr6	33596256	33596755	+	0	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	5017	NR_134628	101929188	Hs.658327	NR_134628		LOC101929188	-	uncharacterized LOC101929188	ncRNA
2.89037-2	chr17	79479683	79480182	+	0	NA	promoter-TSS (NR_037688)	promoter-TSS (NR_037688)	-40	NR_037688	71	Hs.514581	NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
3.27902-11	chr15	31644450	31644949	+	0	NA	intron (NM_001302461, intron 1 of 1)	intron (NM_001302461, intron 1 of 1)	25641	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
11.1634-7	chr5	111035711	111036210	+	0	NA	intron (NR_040093, intron 2 of 6)	intron (NR_040093, intron 2 of 6)	55988	NM_001142483	9315	Hs.36053	NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
9.0309-2	chr14	106158823	106159322	+	0	NA	Intergenic	Intergenic	-19928	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
0.0833099-10	chrX	139013484	139013983	+	0	NA	Intergenic	Intergenic	-7343	NR_030230	574508		NR_030230	ENSG00000207633	MIR505	MIRN505|hsa-mir-505|mir-505	microRNA 505	ncRNA
2.28413-7	chr7	6536334	6536833	+	0	NA	3' UTR (NM_001145118, exon 22 of 22)	3' UTR (NM_001145118, exon 22 of 22)	-12734	NM_006854	11014	Hs.654552	NM_006854	ENSG00000136240	KDELR2	ELP-1|ERD2.2	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
8.06875-4	chr9	66454635	66455134	+	0	NA	Intergenic	Intergenic	-2405	NR_121647	103352539	Hs.351215	NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
0.599818-23	chr12	53714852	53715351	+	0	NA	intron (NM_015665, intron 1 of 15)	intron (NM_015665, intron 1 of 15)	311	NM_001173466	8086	Hs.369144	NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
26.3451	chr2	195231948	195232447	+	0	NA	intron (NR_110222, intron 1 of 5)	LTR14B|LTR|ERVK	23204	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
1.97911-12	chr21	37432199	37433010	+	0	NA	promoter-TSS (NM_001007261)	promoter-TSS (NM_001007261)	58	NM_001007259	54093	Hs.606200	NM_017438	ENSG00000185917	SETD4	C21orf18|C21orf27	SET domain containing 4	protein-coding
2.18245-4	chr2	25142881	25143380	+	0	NA	promoter-TSS (NM_001320613)	promoter-TSS (NM_001320613)	-244	NM_004036	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC-III|AC3	adenylate cyclase 3	protein-coding
0.0436481-25	chr3	102196929	102197428	+	0	NA	3' UTR (NM_001329788, exon 12 of 12)	3' UTR (NM_001329788, exon 12 of 12)	43319	NM_001329788	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida like domain containing 1	protein-coding
2.5649-9	chr6	11537477	11537976	+	0	NA	promoter-TSS (NM_001100829)	promoter-TSS (NM_001100829)	-734	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
0.357404-11	chr3	197282137	197282636	+	0	NA	intron (NM_203314, intron 1 of 7)	CpG	472	NM_004051	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
0.419142-4	chr13	96741864	96742363	+	0	NA	promoter-TSS (NM_153456)	promoter-TSS (NM_153456)	-980	NM_153456	266722	Hs.171001	NM_153456	ENSG00000185352	HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
0.34328-13	chrX	11129091	11129590	+	0	NA	promoter-TSS (NM_001122608)	promoter-TSS (NM_001122608)	-66	NM_005333	3052	Hs.211571	NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
1.45087-3	chr3	12791690	12792189	+	0	NA	intron (NM_001284406, intron 1 of 11)	intron (NM_001284406, intron 1 of 11)	8869	NM_001284407	55287	Hs.475502	NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
1.84422-12	chr2	73143150	73143649	+	0	NA	Intergenic	CpG	-1205	NM_004097	2016	Hs.516090	NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
0.296531-15	chr13	31040872	31041371	+	0	NA	intron (NM_001313893, intron 1 of 4)	intron (NM_001313893, intron 1 of 4)	-1019	NM_002128	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
21.798	chr19	49157872	49158371	+	0	NA	intron (NR_004401, intron 1 of 4)	intron (NR_004401, intron 1 of 4)	-8552	NR_136241	770	Hs.428446	NM_001217	ENSG00000063180	CA11	CARPX1	carbonic anhydrase 11	protein-coding
9.914	chr2	236826107	236826606	+	0	NA	intron (NM_014914, intron 11 of 16)	intron (NM_014914, intron 11 of 16)	250296	NM_001301687	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
1.15771-9	chr1	201012163	201012662	+	0	NA	exon (NM_000069, exon 40 of 44)	exon (NM_000069, exon 40 of 44)	-19584	NM_017596	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
3.00162-2	chr5	78810196	78810695	+	0	NA	promoter-TSS (NM_004272)	promoter-TSS (NM_004272)	-786	NM_001277078	9456	Hs.591761	NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffolding protein 1	protein-coding
5.80044-13	chr9	140994093	140994592	+	0	NA	intron (NM_000718, intron 36 of 45)	intron (NM_000718, intron 36 of 45)	-50223	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
7.77284-5	chr2	122650899	122651398	+	0	NA	Intergenic	SVA_F|Other|Other	138027	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
1.10698-10	chr19	17346336	17346835	+	0	NA	exon (NM_005234, exon 3 of 4)	exon (NM_005234, exon 3 of 4)	9566	NM_005234	2063	Hs.466148	NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
4.86782-13	chr3	196728424	196729259	+	0	NA	promoter-TSS (NR_038285)	promoter-TSS (NR_038285)	-936	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1	MELTF antisense RNA 1	ncRNA
0.0305075-36	chr4	177110657	177111156	+	0	NA	intron (NM_144644, intron 4 of 5)	L1MEe|LINE|L1	5916	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
0.486625-2	chr7	32338352	32338851	+	0	NA	5' UTR (NM_001191058, exon 1 of 19)	5' UTR (NM_001191058, exon 1 of 19)	415	NM_001191058	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
12.7737	chr8	1933331	1933830	+	0	NA	intron (NM_014867, intron 1 of 1)	intron (NM_014867, intron 1 of 1)	11536	NM_014867	9920	Hs.5333	NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
0.925886-18	chr13	95952970	95953469	+	0	NA	intron (NM_001105515, intron 1 of 20)	intron (NM_001105515, intron 1 of 20)	481	NM_001301830	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
0.619809-4	chr6	127587516	127588015	+	0	NA	promoter-TSS (NM_030963)	promoter-TSS (NM_030963)	-62	NM_001242851	81847	Hs.267120	NM_030963	ENSG00000118518	RNF146	-	ring finger protein 146	protein-coding
0.209071-13	chr4	141500352	141500851	+	0	NA	Intergenic	Intergenic	-10642	NM_021833	7350	Hs.249211	NM_021833	ENSG00000109424	UCP1	SLC25A7|UCP	uncoupling protein 1	protein-coding
12.321	chr11	61461742	61462241	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	14086	NM_006133	747	Hs.241564	NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR	diacylglycerol lipase alpha	protein-coding
0.716041-6	chr18	9334071	9334570	+	0	NA	promoter-TSS (NM_020648)	promoter-TSS (NM_020648)	-445	NM_020648	57045	Hs.514685	NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
8.06875-3	chr8	103668109	103668608	+	0	NA	promoter-TSS (NM_005655)	promoter-TSS (NM_005655)	-228	NM_005655	7071	Hs.435001	NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel like factor 10	protein-coding
2.75724-3	chr2	17081536	17082035	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-234651	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding
1.77832-5	chr2	33824266	33824765	+	0	NA	promoter-TSS (NM_001304538)	promoter-TSS (NM_001304538)	-86	NM_015475	25940	Hs.468140	NM_015475	ENSG00000119812	FAM98A	-	family with sequence similarity 98 member A	protein-coding
4.65974-21	chr10	79625638	79626137	+	0	NA	intron (NM_004747, intron 2 of 31)	intron (NM_004747, intron 2 of 31)	60461	NM_004747	9231	Hs.652690	NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG	discs large MAGUK scaffold protein 5	protein-coding
0.319843	chr3	192813847	192814346	+	0	NA	Intergenic	Intergenic	-144821	NM_020386	57110	Hs.36761	NM_020386	ENSG00000127252	HRASLS	A-C1|H-REV107|HRASLS1|HRSL1|HSD28	HRAS like suppressor	protein-coding
17.9588	chr12	116322782	116323281	+	0	NA	Intergenic	Intergenic	263428	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
2.81498-3	chr15	32686989	32687488	+	0	NA	intron (NM_001282493, intron 13 of 18)	intron (NM_001282493, intron 13 of 18)	8255	NM_001282493	653125		NM_001282493	ENSG00000249931	GOLGA8K	-	golgin A8 family member K	protein-coding
0.296531-137	chr19	46272573	46273072	+	0	NA	promoter-TSS (NM_175875)	promoter-TSS (NM_175875)	-325	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
34.51	chr12	105218095	105218594	+	0	NA	intron (NM_032148, intron 9 of 9)	LTR1|LTR|ERV1	104128	NM_032148	84102	Hs.577463	NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
10.1773-4	chr4	132852325	132852824	+	0	NA	Intergenic	L1PA13|LINE|L1	166581	NR_125884	101927305	Hs.507924	NR_125883		LOC101927305	-	uncharacterized LOC101927305	ncRNA
10.5799-6	chr3	73143100	73143599	+	0	NA	Intergenic	Intergenic	32539	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
9.43095-6	chr7	116690054	116690553	+	0	NA	intron (NM_018412, intron 1 of 14)	Tigger2|DNA|TcMar-Tigger	30038	NR_106748	102466616		NR_106748	ENSG00000004866	MIR6132	hsa-mir-6132	microRNA 6132	ncRNA
5.70248-14	chr9	6354030	6354529	+	0	NA	Intergenic	Intergenic	25930	NM_033516	89882	Hs.351815	NM_033516	ENSG00000170777	TPD52L3	NYDSP25|hD55	tumor protein D52 like 3	protein-coding
12.9073	chr1	220960512	220961011	+	0	NA	intron (NM_022746, intron 1 of 6)	intron (NM_022746, intron 1 of 6)	722	NM_022746	64757	Hs.497816	NM_022746	ENSG00000186205	MARC1	MOSC1	mitochondrial amidoxime reducing component 1	protein-coding
1.03474-12	chr14	30096221	30096720	+	0	NA	intron (NM_001330069, intron 12 of 18)	intron (NM_001330069, intron 12 of 18)	300429	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
0.535477	chr2	30370459	30370958	+	0	NA	intron (NM_016061, intron 1 of 2)	CpG	958	NM_016061	51646	Hs.515890	NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
0.472076-34	chr17	40114877	40115376	+	0	NA	intron (NM_031421, intron 10 of 10)	intron (NM_031421, intron 10 of 10)	-3633	NM_033133	1267	Hs.273621	NM_033133	ENSG00000173786	CNP	CNP1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
16.5561-7	chr6	83150695	83151194	+	0	NA	Intergenic	Intergenic	76983	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
2.35824-15	chr1	173992524	173993023	+	0	NA	Intergenic	Intergenic	-30563	NM_001300850	149041	Hs.30258	NM_172071	ENSG00000135870	RC3H1	RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
0.909791-5	chr15	79001627	79002126	+	0	NA	Intergenic	Intergenic	-42503	NR_036495	646938	Hs.449783	NR_036495	ENSG00000238166	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
5.98599-4	chr14	79795503	79796002	+	0	NA	intron (NM_001105250, intron 1 of 6)	MER45B|DNA|hAT-Tip100	50070	NM_001272020	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
15.6384-3	chr21	33824621	33825120	+	0	NA	intron (NM_001320744, intron 1 of 5)	LTR1|LTR|ERV1	40125	NR_104472	59271	Hs.208358	NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
1.75224	chr14	81893715	81894214	+	0	NA	promoter-TSS (NM_001256430)	promoter-TSS (NM_001256430)	-216	NM_001256430	85439	Hs.14248	NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
2.79841-2	chr11	63686747	63687246	+	0	NA	Intergenic	Intergenic	-2680	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
8.69666-14	chr12	122203398	122203897	+	0	NA	intron (NM_001080825, intron 6 of 11)	intron (NM_001080825, intron 6 of 11)	27947	NM_019034	54509	Hs.707579	NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
0.560111-10	chr2	113012152	113012651	+	0	NA	intron (NM_032494, intron 1 of 8)	CpG	263	NM_032494	84524	Hs.418416	NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
22.2185	chrX	131428124	131428623	+	0	NA	intron (NR_110410, intron 2 of 2)	intron (NR_110410, intron 2 of 2)	-74865	NM_001271186	57826	Hs.119889	NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
11.0127	chr6	141531629	141532467	+	0	NA	Intergenic	MER53|DNA|hAT	527097	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
0.0130484-34	chrX	31032502	31033001	+	0	NA	Intergenic	LTR9B|LTR|ERV1	57419	NM_031894	53940	Hs.333125	NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
1.4813-10	chr6	167411191	167411690	+	0	NA	promoter-TSS (NR_037504)	promoter-TSS (NR_037504)	-40	NR_037504	100500857		NR_037504	ENSG00000265828	MIR3939	mir-3939	microRNA 3939	ncRNA
0.649968-7	chr11	116480943	116481442	+	0	NA	Intergenic	Intergenic	-28947	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
0.395292-12	chr21	32976850	32977349	+	0	NA	Intergenic	Intergenic	45541	NM_001321023	150051	Hs.708976	NM_001321023		LOC150051	-	uncharacterized LOC150051	protein-coding
3.45823-7	chr14	61789327	61789826	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	1415	NM_006255	5583	Hs.333907	NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C eta	protein-coding
0.91515-3	chr18	60278161	60278660	+	0	NA	Intergenic	Intergenic	87752	NR_126534	54877	Hs.114191	NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
33.9254	chr14	62075423	62075922	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-38301	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
0.404816-15	chr9	976962	977461	+	0	NA	exon (NM_021240, exon 1 of 2)	exon (NM_021240, exon 1 of 2)	243	NM_021240	58524	Hs.189174	NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
3.58526-5	chr8	12051200	12051699	+	0	NA	intron (NM_001083537, intron 1 of 6)	CpG	175	NM_001083537	85002	Hs.675799	NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
7.14443-13	chr12	52569749	52570248	+	0	NA	intron (NM_001081492, intron 4 of 8)	intron (NM_001081492, intron 4 of 8)	15786	NM_182507	144501	Hs.140978	NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
3.31614-8	chr1	4168314	4168813	+	0	NA	Intergenic	Intergenic	167891	NR_040065	728716	Hs.668359	NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
1.53663-7	chr17	17426632	17427131	+	0	NA	intron (NM_001267551, intron 2 of 6)	intron (NM_001267551, intron 2 of 6)	-27172	NM_016084	51655	Hs.25829	NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
1.16907-6	chr11	2441844	2442343	+	0	NA	intron (NM_014555, intron 3 of 23)	CpG	2182	NM_014555	29850	Hs.272287	NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
3.13364	chr11	118401566	118402390	+	0	NA	promoter-TSS (NR_120574)	promoter-TSS (NR_120574)	-169	NR_120576	101929089	Hs.666633	NR_120572	ENSG00000255435	LOC101929089	-	uncharacterized LOC101929089	ncRNA
4.24812	chr4	47465424	47465923	+	0	NA	promoter-TSS (NM_001329668)	promoter-TSS (NM_001329668)	74	NM_001329668	54951	Hs.23956	NM_017845	ENSG00000169019	COMMD8	-	COMM domain containing 8	protein-coding
2.41845-5	chr7	139025100	139025599	+	0	NA	promoter-TSS (NM_001244584)	promoter-TSS (NM_001244584)	153	NR_073059	154791	Hs.718441	NM_197964	ENSG00000164898	FMC1	C7orf55|HSPC268	formation of mitochondrial complex V assembly factor 1 homolog	protein-coding
0.32452-12	chr16	89105384	89105883	+	0	NA	Intergenic	Intergenic	-54584	NM_001127214	197322	Hs.461727	NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
3.68556-12	chr17	42852664	42853344	+	0	NA	exon (NM_002390, exon 17 of 27)	exon (NM_002390, exon 17 of 27)	16457	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
17.5945-3	chr3	58668540	58669039	+	0	NA	Intergenic	Intergenic	-16228	NM_138805	131177	Hs.61265	NM_138805	ENSG00000198643	FAM3D	EF7|OIT1	family with sequence similarity 3 member D	protein-coding
2.77366-5	chr17	70628292	70628791	+	0	NA	intron (NR_033876, intron 2 of 4)	intron (NR_033876, intron 2 of 4)	8070	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
0.649968-39	chr7	73588277	73588776	+	0	NA	promoter-TSS (NM_031992)	promoter-TSS (NM_031992)	-180	NM_022170	7458	Hs.520943	NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
0.974532-5	chr15	91407680	91408179	+	0	NA	Intergenic	Intergenic	-3893	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
1.20904-10	chr2	239149828	239150327	+	0	NA	Intergenic	Intergenic	-1312	NM_001142853	55502	Hs.42949	NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
0.123337-37	chr1	805025	805524	+	0	NA	intron (NR_027055, intron 2 of 2)	CpG	6908	NR_027055	284593	Hs.449006	NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
0.132283-19	chr19	54693478	54693977	+	0	NA	promoter-TSS (NM_001282333)	promoter-TSS (NM_001282333)	6	NM_001146056	79143	Hs.467279	NM_024298	ENSG00000125505	MBOAT7	BB1|LENG4|LPIAT|LRC4|MBOA7|MRT57|OACT7|hMBOA-7	membrane bound O-acyltransferase domain containing 7	protein-coding
0.809219-11	chr1	32219375	32219874	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	4712	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
0.357404-15	chr3	128027830	128028329	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-154358	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
1.07905-3	chr9	36772843	36773342	+	0	NA	Intergenic	MIRb|SINE|MIR	50504	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
2.24026-21	chr6	27806438	27806937	+	0	NA	promoter-TSS (NM_003510)	promoter-TSS (NM_003510)	247	NM_003520	8341	Hs.534368	NM_003520	ENSG00000233822	HIST1H2BN	H2B/d|H2BFD	histone cluster 1 H2B family member n	protein-coding
0.535477-5	chr2	2773606	2774105	+	0	NA	Intergenic	Intergenic	355943	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
1.73925-10	chr4	150931625	150932124	+	0	NA	Intergenic	Intergenic	-67552	NM_001040261	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
4.13413-10	chr12	54773336	54773835	+	0	NA	intron (NM_001130968, intron 2 of 6)	intron (NM_001130968, intron 2 of 6)	4929	NM_001290001	25946	Hs.505653	NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
12.0343-5	chr22	47447569	47448068	+	0	NA	intron (NR_104292, intron 12 of 13)	intron (NR_104292, intron 12 of 13)	-135880	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
13.0103-11	chr2	142486398	142486897	+	0	NA	intron (NM_018557, intron 2 of 90)	intron (NM_018557, intron 2 of 90)	402623	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
41.3966	chrX	152822077	152822576	+	0	NA	intron (NM_021949, intron 13 of 20)	intron (NM_021949, intron 13 of 20)	20746	NM_021949	492	Hs.533956	NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
1.27844-8	chr20	31350104	31350603	+	0	NA	5' UTR (NM_175848, exon 1 of 22)	5' UTR (NM_175848, exon 1 of 22)	162	NM_001207056	1789	Hs.643024	NM_006892	ENSG00000088305	DNMT3B	ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
22.2621	chr13	115025487	115025986	+	0	NA	intron (NM_001078645, intron 14 of 17)	intron (NM_001078645, intron 14 of 17)	-13567	NR_039724	100616227		NR_039724	ENSG00000265450	MIR4502	-	microRNA 4502	ncRNA
14.2829	chr4	38809847	38810346	+	0	NA	Intergenic	SVA_D|Other|Other	-3684	NM_003263	7096	Hs.621817	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding
6.30784-9	chr8	95925113	95925612	+	0	NA	Intergenic	Intergenic	-17880	NM_057749	9134	Hs.521693	NM_004702	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding
9.82967-2	chr1	232574152	232574651	+	0	NA	intron (NM_020808, intron 13 of 20)	intron (NM_020808, intron 13 of 20)	76953	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding
1.84422-13	chr5	134344981	134345480	+	0	NA	intron (NM_178019, intron 6 of 7)	intron (NM_178019, intron 6 of 7)	-23740	NM_001277348	100996485		NM_001277348		C5orf66	-	chromosome 5 open reading frame 66	protein-coding
1.45087-21	chr5	102310671	102311170	+	0	NA	intron (NM_001177306, intron 14 of 24)	intron (NM_001177306, intron 14 of 24)	109393	NM_138822	5066	Hs.369430	NM_000919	ENSG00000145730	PAM	PAL|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
0.268721-44	chr3	150802936	150803435	+	0	NA	Intergenic	CpG	-1400	NM_053002	116931	Hs.744234	NM_053002	ENSG00000144893	MED12L	NOPAR|TNRC11L|TRALP|TRALPUSH	mediator complex subunit 12 like	protein-coding
10.2641-2	chr8	142168056	142168555	+	0	NA	intron (NM_014957, intron 8 of 22)	intron (NM_014957, intron 8 of 22)	29585	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
1.49967-8	chr17	56429374	56429873	+	0	NA	promoter-TSS (NM_003168)	promoter-TSS (NM_003168)	-24	NR_073470	6827	Hs.439481	NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
6.55608-9	chr11	96916834	96917333	+	0	NA	Intergenic	L1PA3|LINE|L1	675494	NR_135097	105369443	Hs.599377	NR_135097	ENSG00000256684	LOC105369443	-	uncharacterized LOC105369443	ncRNA
0.0392635	chr3	151986431	151986930	+	0	NA	non-coding (NR_027037, exon 2 of 2)	non-coding (NR_027037, exon 2 of 2)	423	NM_021038	4154	Hs.201858	NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
0.438316-2	chr14	64760601	64761100	+	0	NA	5' UTR (NM_001040275, exon 1 of 9)	5' UTR (NM_001040275, exon 1 of 9)	278	NM_001040275	2100	Hs.660607	NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2	estrogen receptor 2	protein-coding
4.05607-8	chr10	120840087	120840586	+	0	NA	promoter-TSS (NM_003750)	promoter-TSS (NM_003750)	-2	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
18.2974-6	chr1	4455653	4456152	+	0	NA	Intergenic	Intergenic	-16209	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
22.9243-2	chr8	54117693	54118192	+	0	NA	Intergenic	Intergenic	46315	NM_001282904	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
0.070049-32	chr11	397097	397596	+	0	NA	exon (NM_007183, exon 3 of 13)	exon (NM_007183, exon 3 of 13)	3163	NM_007183	11187	Hs.534395	NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
7.16699-13	chr3	186046486	186046985	+	0	NA	intron (NM_001080744, intron 1 of 23)	intron (NM_001080744, intron 1 of 23)	33288	NM_001080745	1608	Hs.683449	NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
1.15771-4	chr2	114170332	114170831	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-24687	NM_001330339	150472	Hs.531330	NM_172003	ENSG00000136682	CBWD2	-	COBW domain containing 2	protein-coding
19.4692-7	chr20	24222058	24222557	+	0	NA	Intergenic	L1PA13|LINE|L1	41904	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
9.39302-8	chr16	52948190	52948689	+	0	NA	Intergenic	LTR1B|LTR|ERV1	138346	NR_136518	105371267		NR_136518	ENSG00000277639	LOC105371267	PR-lncRNA-1	p53-regulated lncRNA 1	ncRNA
15.7187	chr17	78246031	78246530	+	0	NA	intron (NM_001256071, intron 2 of 67)	MSTB2|LTR|ERVL-MaLR	11620	NM_001256071	57674	Hs.195642	NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
0.48177-22	chr7	122004995	122005494	+	0	NA	intron (NM_001009571, intron 23 of 27)	intron (NM_001009571, intron 23 of 27)	-60679	NM_001160264	389549	Hs.553970	NM_001024613	ENSG00000128610	FEZF1	FEZ|HH22|ZNF312B	FEZ family zinc finger 1	protein-coding
0.409586-28	chr22	39483745	39484244	+	0	NA	TTS (NM_021822)	TTS (NM_021822)	-9235	NM_181773	164668	Hs.440515	NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
0.0261362-40	chr19	8874720	8875219	+	0	NA	Intergenic	L1MD|LINE|L1	33653	NM_001004699	284383	Hs.553675	NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
0.0921731-25	chr5	114505463	114505962	+	0	NA	promoter-TSS (NM_001300759)	promoter-TSS (NM_001300759)	-52	NM_001300759	55521	Hs.519514	NM_018700	ENSG00000152503	TRIM36	HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
2.44888-9	chr16	49053659	49054158	+	0	NA	Intergenic	Intergenic	261834	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
3.44862-3	chr5	118028560	118029059	+	0	NA	Intergenic	Intergenic	96926	NR_104998	102467225	Hs.582523	NR_104998	ENSG00000249128	LOC102467225	-	uncharacterized LOC102467225	ncRNA
0.15923-28	chr5	179023559	179024058	+	0	NA	intron (NM_001040452, intron 13 of 17)	intron (NM_001040452, intron 13 of 17)	6934	NR_110560	101928445	Hs.663255	NR_110560	ENSG00000244945	LOC101928445	-	uncharacterized LOC101928445	ncRNA
3.90406-14	chr13	36558928	36559427	+	0	NA	intron (NM_001330071, intron 3 of 16)	intron (NM_001330071, intron 3 of 16)	-129179	NM_001195416	9201	Hs.507755	NM_004734	ENSG00000133083	DCLK1	CL1|CLICK1|DCAMKL1|DCDC3A|DCLK	doublecortin like kinase 1	protein-coding
13.3442-5	chr5	61419970	61420469	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-181770	NM_004520	3796	Hs.558351	NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
1.18045-18	chr1	89989451	89989950	+	0	NA	promoter-TSS (NM_001134476)	promoter-TSS (NM_001134476)	-697	NM_001134476	23507	Hs.482017	NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 family member B	protein-coding
0.414361-28	chr4	107971658	107972157	+	0	NA	Intergenic	Intergenic	-14454	NM_014421	27123	Hs.211869	NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
1.11821-24	chr12	76116392	76116891	+	0	NA	Intergenic	Intergenic	-211223	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
44.1454	chr6	133992433	133992932	+	0	NA	intron (NR_109982, intron 4 of 8)	MSTA|LTR|ERVL-MaLR	-149603	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
0.963675-4	chr9	132220442	132220941	+	0	NA	Intergenic	Intergenic	-30248	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
3.6251-9	chr1	231004244	231004743	+	0	NA	promoter-TSS (NM_032800)	promoter-TSS (NM_032800)	-191	NM_032800	84886	Hs.520494	NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
2.61219-30	chr6	26520647	26521146	+	0	NA	Intergenic	Intergenic	-1038	NR_026790	493812	Hs.272939	NR_026790		HCG11	CTA-14H9.3|bK14H9.3	HLA complex group 11 (non-protein coding)	ncRNA
13.4199-9	chr14	51914075	51914574	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-41515	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
3.87216	chr14	36445311	36445810	+	0	NA	Intergenic	SVA_E|Other|Other	-94073	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
0.496351-28	chr3	169490229	169490728	+	0	NA	promoter-TSS (NM_001185118)	promoter-TSS (NM_001185118)	-375	NM_018657	55892	Hs.507025	NM_018657	ENSG00000085274	MYNN	OSZF|SBBIZ1|ZBTB31|ZNF902	myoneurin	protein-coding
1.70053-25	chr3	42485231	42485730	+	0	NA	Intergenic	Intergenic	-33386	NM_001304386	131375	Hs.234895	NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
9.24453-12	chr4	174450194	174450693	+	0	NA	5' UTR (NM_021973, exon 1 of 2)	5' UTR (NM_021973, exon 1 of 2)	692	NR_136197	79804	Hs.61435	NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301|UPH	HAND2 antisense RNA 1 (head to head)	ncRNA
6.67562-2	chr1	85575000	85575499	+	0	NA	intron (NM_145172, intron 15 of 22)	intron (NM_145172, intron 15 of 22)	-24228	NR_039619	100616481		NR_039619	ENSG00000266110	MIR4423	mir-4423	microRNA 4423	ncRNA
7.47147-11	chr15	85956618	85957117	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	33020	NM_006738	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
0.0348833-15	chr10	118652543	118653042	+	0	NA	intron (NM_018330, intron 14 of 14)	intron (NM_018330, intron 14 of 14)	-43504	NM_001330164	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
6.92504-12	chr6	21589316	21589815	+	0	NA	Intergenic	Intergenic	-4407	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY-box 4	protein-coding
3.49692-19	chr2	37452350	37452849	+	0	NA	intron (NM_005760, intron 2 of 15)	LTR5_Hs|LTR|ERVK	6141	NM_005760	10153	Hs.135406	NM_005760	ENSG00000115816	CEBPZ	CBF|CBF2|HSP-CBF|NOC1	CCAAT/enhancer binding protein zeta	protein-coding
1.70696-2	chr17	42101616	42102115	+	0	NA	Intergenic	Intergenic	-1346	NM_001304813	84336	Hs.514211	NM_032376	ENSG00000091947	TMEM101	-	transmembrane protein 101	protein-coding
4.31798-20	chr9	132369348	132369847	+	0	NA	Intergenic	Intergenic	-1566	NM_001286796	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
57.2584	chr7	80627153	80627652	+	0	NA	Intergenic	L2a|LINE|L2	-78735	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
2.22573	chr4	186160868	186161367	+	0	NA	intron (NM_001317781, intron 1 of 18)	SVA_D|Other|Other	35726	NM_001317781	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
8.79426-14	chr12	7023389	7023888	+	0	NA	promoter-TSS (NM_001975)	promoter-TSS (NM_001975)	24	NM_001975	2026	Hs.511915	NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
0.423927-5	chr20	31211236	31211735	+	0	NA	Intergenic	Intergenic	28298	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding
3.88277-6	chr10	13858553	13859052	+	0	NA	intron (NM_018027, intron 3 of 24)	intron (NM_018027, intron 3 of 24)	-109235	NM_001318338	55691	Hs.330463	NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
0.199966-12	chr14	69310553	69311052	+	0	NA	Intergenic	Intergenic	-47842	NM_001244701	677	Hs.85155	NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
6.34512-6	chr11	89400121	89400620	+	0	NA	intron (NM_153696, intron 2 of 13)	LTR9|LTR|ERV1	7905	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
1.98596-4	chr10	51827393	51827892	+	0	NA	promoter-TSS (NR_038275)	promoter-TSS (NR_038275)	-6	NM_001291398	387680	Hs.365286	NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
0.0305075-45	chr11	57434260	57434759	+	0	NA	promoter-TSS (NM_015457)	promoter-TSS (NM_015457)	-965	NM_015457	25921	Hs.27239	NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type containing 5	protein-coding
0.177288-11	chr7	127775279	127776147	+	0	NA	Intergenic	CpG	53800	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
20.4721	chr6	160216189	160216688	+	0	NA	intron (NR_134861, intron 2 of 3)	LTR5_Hs|LTR|ERVK	-4843	NM_001271862	154197	Hs.349077	NM_173516	ENSG00000146453	PNLDC1	-	PARN like, ribonuclease domain containing 1	protein-coding
0.00434512-50	chr1	144593760	144594259	+	0	NA	intron (NM_001278267, intron 52 of 130)	CpG	18710	NR_003242	767846	Hs.657186	NR_003242	ENSG00000270392	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
25.1856-3	chr8	33086534	33087033	+	0	NA	Intergenic	LTR79|LTR|ERVL	243881	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
0.32452-10	chr18	26727761	26728260	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-970600	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
5.95166-2	chr2	142180621	142181120	+	0	NA	intron (NM_018557, intron 3 of 90)	(T)n|Simple_repeat|Simple_repeat	708400	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
8.86057-7	chr13	80420442	80420941	+	0	NA	Intergenic	Intergenic	-26030	NR_120413	101927195	Hs.342412	NR_120413	ENSG00000229175	LINC00382	TCONS_00021500	long intergenic non-protein coding RNA 382	ncRNA
1.53663-36	chr1	38550855	38551354	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3799	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
8.041-3	chr9	8917883	8918382	+	0	NA	intron (NM_002839, intron 11 of 45)	intron (NM_002839, intron 11 of 45)	60114	NR_121600	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
0.168249-15	chr3	117162960	117163459	+	0	NA	Intergenic	LTR1B|LTR|ERV1	522931	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
20.5502	chr2	234862102	234862601	+	0	NA	intron (NM_024080, intron 9 of 25)	intron (NM_024080, intron 9 of 25)	36308	NM_024080	79054	Hs.366053	NM_024080	ENSG00000144481	TRPM8	LTRPC6|TRPP8	transient receptor potential cation channel subfamily M member 8	protein-coding
12.6122-5	chr20	15356400	15356899	+	0	NA	intron (NM_080676, intron 6 of 16)	intron (NM_080676, intron 6 of 16)	179145	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
0.467237-16	chr10	3169031	3169530	+	0	NA	intron (NM_001345944, intron 16 of 21)	intron (NM_001345944, intron 16 of 21)	-7016	NR_132758	106633806		NR_132758		SNORD142	SNORA85|SNORD174|ZL68	small nucleolar RNA, C/D box 142	snoRNA
0.51587-9	chrX	153085979	153086478	+	0	NA	intron (NM_032512, intron 1 of 7)	L1MC4|LINE|L1	9123	NM_001303515	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
8.60121-2	chr13	94550457	94550956	+	0	NA	intron (NM_005708, intron 3 of 8)	intron (NM_005708, intron 3 of 8)	-39980	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
0.856568-27	chr6	76311351	76311850	+	0	NA	5' UTR (NM_001304792, exon 1 of 15)	5' UTR (NM_001304792, exon 1 of 15)	375	NM_015571	26054	Hs.485784	NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO1/sentrin specific peptidase 6	protein-coding
1.43876-9	chr8	120220218	120220717	+	0	NA	promoter-TSS (NM_052886)	promoter-TSS (NM_052886)	-143	NM_052886	114569	Hs.201083	NM_052886	ENSG00000147676	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
2.66001-6	chr3	48481276	48481775	+	0	NA	promoter-TSS (NM_001256964)	promoter-TSS (NM_001256964)	4	NM_001256964	79714	Hs.187657	NM_024661	ENSG00000164051	CCDC51	-	coiled-coil domain containing 51	protein-coding
6.30784-15	chr8	37888244	37888743	+	0	NA	intron (NM_004095, intron 1 of 2)	CpG	473	NM_004095	1978	Hs.411641	NM_004095	ENSG00000187840	EIF4EBP1	4E-BP1|4EBP1|BP-1|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
0.741724-12	chr12	104318968	104319467	+	0	NA	intron (NR_027249, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	4772	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
12.1183	chr2	216811243	216811742	+	0	NA	intron (NM_018000, intron 3 of 4)	intron (NM_018000, intron 3 of 4)	66854	NM_018000	55686	Hs.620391	NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
0.783135-24	chr3	186528629	186529128	+	0	NA	non-coding (NR_125409, exon 4 of 4)	non-coding (NR_125409, exon 4 of 4)	-4394	NM_181573	5984	Hs.732098	NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
15.9688	chr3	177129909	177130408	+	0	NA	Intergenic	SVA_C|Other|Other	-29551	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
11.261	chr10	18172539	18173038	+	0	NA	intron (NM_002438, intron 21 of 29)	intron (NM_002438, intron 21 of 29)	38752	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
1.37869-2	chr7	156931177	156932083	+	0	NA	promoter-TSS (NM_014671)	promoter-TSS (NM_014671)	-25	NM_014671	9690	Hs.118351	NM_014671	ENSG00000009335	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding
21.4813-2	chr3	175528678	175529177	+	0	NA	Intergenic	Intergenic	-34806	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
0.79355-2	chr3	129344939	129345438	+	0	NA	Intergenic	L1ME1|LINE|L1	-19606	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
0.584886-2	chr15	40762877	40763376	+	0	NA	promoter-TSS (NM_130468)	promoter-TSS (NM_130468)	-34	NM_130468	113189	Hs.442449	NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
0.315171-8	chr17	72732681	72733180	+	0	NA	promoter-TSS (NM_001163989)	promoter-TSS (NM_001163989)	-29	NM_001163989	326624	Hs.351413	NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
2.05512-3	chr12	99135422	99135921	+	0	NA	intron (NM_001204081, intron 9 of 9)	intron (NM_001204081, intron 9 of 9)	96593	NM_181869	317	Hs.552567	NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
1.11821-6	chr3	158956377	158956876	+	0	NA	intron (NM_001197113, intron 1 of 10)	intron (NM_001197113, intron 1 of 10)	-34410	NM_001197108	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
6.36388	chr11	10371274	10371773	+	0	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	41663	NR_103765	100130460	Hs.501890	NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
1.81115-9	chr20	13240518	13241017	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	-20433	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
4.58421-3	chr5	22560223	22560722	+	0	NA	intron (NM_004061, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	293259	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
8.41638-6	chr9	134409940	134410439	+	0	NA	Intergenic	Intergenic	-3527	NR_134667	83549	Hs.9597	NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
11.7393	chr7	39124013	39124512	+	0	NA	intron (NM_001166018, intron 2 of 10)	intron (NM_001166018, intron 2 of 10)	-71095	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA
2.99296-18	chr4	40910457	40910956	+	0	NA	intron (NM_001166050, intron 10 of 17)	intron (NM_001166050, intron 10 of 17)	-51497	NM_001166053	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
2.79014-19	chr9	67277834	67278333	+	0	NA	intron (NR_002817, intron 3 of 3)	MER102b|DNA|hAT-Charlie	11409	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
2.06908	chr2	24162383	24162882	+	0	NA	promoter-TSS (NM_181713)	promoter-TSS (NM_181713)	-744	NM_181713	165324	Hs.591576	NM_181713	ENSG00000173960	UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
17.2354-5	chr14	77525798	77526297	+	0	NA	non-coding (NR_110554, exon 2 of 4)	non-coding (NR_110554, exon 2 of 4)	16487	NR_110553	102724190	Hs.562528	NR_110553	ENSG00000258819	LOC102724190	-	uncharacterized LOC102724190	ncRNA
0.925886-17	chr3	39185589	39186088	+	0	NA	exon (NM_001320560, exon 4 of 5)	exon (NM_001320560, exon 4 of 5)	3083	NM_001320559	64651	Hs.370950	NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
1.07905-12	chr15	28344210	28344709	+	0	NA	promoter-TSS (NM_000275)	promoter-TSS (NM_000275)	-1	NM_000275	4948	Hs.654411	NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
4.37707-4	chr6	37533350	37533849	+	0	NA	Intergenic	Intergenic	-10401	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
1.52427-2	chr9	2297992	2298491	+	0	NA	Intergenic	L2a|LINE|L2	139785	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
1.10138-9	chr11	57113037	57113536	+	0	NA	intron (NM_002559, intron 1 of 11)	intron (NM_002559, intron 1 of 11)	7445	NM_002559	5024	Hs.146738	NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
0.231917-40	chr4	174042123	174042622	+	0	NA	Intergenic	Intergenic	-47532	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
6.17983-2	chr4	56719552	56720051	+	0	NA	promoter-TSS (NM_001024924)	promoter-TSS (NM_001024924)	-15	NM_018261	55763	Hs.269665	NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
1.98596-9	chr17	76220247	76220746	+	0	NA	3' UTR (NM_001168, exon 4 of 4)	3' UTR (NM_001168, exon 4 of 4)	-6895	NM_001204212	283999	Hs.632228	NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
2.58848-12	chr18	45820320	45820819	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	115224	NM_001318841	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
3.60514-4	chr17	5372063	5372562	+	0	NA	promoter-TSS (NR_135644)	promoter-TSS (NR_135644)	68	NM_001199699	56919	Hs.250456	NM_020162	ENSG00000005100	DHX33	DDX33	DEAH-box helicase 33	protein-coding
12.8988-2	chr18	20840139	20840638	+	0	NA	TTS (NM_001256438)	TTS (NM_001256438)	104599	NM_138375	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
1.81115-7	chr7	5632383	5632882	+	0	NA	exon (NM_003088, exon 1 of 5)	exon (NM_003088, exon 1 of 5)	196	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
26.5758-2	chr3	106059843	106060342	+	0	NA	Intergenic	Intergenic	-471826	NR_135810	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
1.9044-17	chr18	18691141	18691640	+	0	NA	5' UTR (NM_005406, exon 1 of 33)	5' UTR (NM_005406, exon 1 of 33)	422	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
0.209071-11	chr6	12013023	12013522	+	0	NA	intron (NM_002114, intron 1 of 8)	CpG	548	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
4.49772	chr8	144783772	144784271	+	0	NA	Intergenic	Intergenic	4736	NR_015445	286076	Hs.178095	NM_001024610		BREA2	-	breast cancer estrogen-induced apoptosis 2	ncRNA
3.88277-3	chr2	109335620	109336119	+	0	NA	promoter-TSS (NM_006267)	promoter-TSS (NM_006267)	-68	NM_006267	5903	Hs.199561	NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
5.80044-2	chr13	50184235	50184734	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-17951	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
1.98596-11	chr15	49090446	49090945	+	0	NA	intron (NM_014985, intron 2 of 25)	intron (NM_014985, intron 2 of 25)	12648	NM_014985	22995	Hs.443005	NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
3.79864	chr17	59433922	59434421	+	0	NA	intron (NM_001330413, intron 23 of 25)	intron (NM_001330413, intron 23 of 25)	10894	NR_136397	101927855	Hs.662123	NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
19.0309-3	chr4	83631172	83631671	+	0	NA	intron (NM_024906, intron 1 of 3)	MIR3|SINE|MIR	43162	NR_030301	693160		NR_030301	ENSG00000207746	MIR575	MIRN575|hsa-mir-575	microRNA 575	ncRNA
23.4679	chr20	44048091	44048590	+	0	NA	intron (NR_047695, intron 2 of 8)	intron (NR_047695, intron 2 of 8)	3633	NM_001184729	51604	Hs.437388	NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding
5.27244-4	chr1	117971407	117971906	+	0	NA	intron (NM_006699, intron 5 of 12)	SVA_F|Other|Other	61571	NM_006699	10905	Hs.435938	NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
22.6043	chr8	60028033	60028532	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	3485	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
34.7366	chr1	85763636	85764135	+	0	NA	Intergenic	Intergenic	-21298	NM_001320715	8915	Hs.193516	NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	B-cell CLL/lymphoma 10	protein-coding
2.68411	chr10	21812396	21812895	+	0	NA	5' UTR (NM_207371, exon 2 of 4)	5' UTR (NM_207371, exon 2 of 4)	1966	NM_207371	387640	Hs.350848	NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
11.3906	chr16	58460815	58461314	+	0	NA	Intergenic	Intergenic	34766	NM_001126130	64785	Hs.47125	NM_022770	ENSG00000181938	GINS3	PSF3	GINS complex subunit 3	protein-coding
0.540393-55	chr2	169517351	169517850	+	0	NA	intron (NM_203463, intron 4 of 9)	intron (NM_203463, intron 4 of 9)	78147	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
5.25784-11	chr6	112259855	112260354	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-65449	NM_002037	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
0.0877392-30	chrX	102203831	102204330	+	0	NA	Intergenic	Intergenic	11880	NM_001031834	282808	Hs.449517	NM_001031834	ENSG00000102128	RAB40AL	MRXSMP|RAR2|RLGP	RAB40A, member RAS oncogene family-like	protein-coding
24.8413	chr1	245462078	245462577	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	144040	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
0.872467-8	chr9	115555390	115555889	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	42505	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
1.27261-4	chr12	328977	329476	+	0	NA	TTS (NM_001190997)	TTS (NM_001190997)	-5855	NM_001206931	6539	Hs.437174	NM_003044	ENSG00000111181	SLC6A12	BGT-1|BGT1|GAT2	solute carrier family 6 member 12	protein-coding
23.8934	chr5	154653597	154654096	+	0	NA	Intergenic	Intergenic	260531	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
0.433514-10	chr15	63782796	63783295	+	0	NA	Intergenic	Intergenic	-13665	NR_046341	9960	Hs.458499	NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
3.12471-15	chr12	63813861	63814360	+	0	NA	Intergenic	LTR55|LTR|ERV	248244	NM_173812	283417	Hs.533644	NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
1.45694	chrX	109560103	109560602	+	0	NA	intron (NM_001171689, intron 3 of 7)	intron (NM_001171689, intron 3 of 7)	1028	NM_001025580	9949	Hs.656243	NM_015365	ENSG00000101935	AMMECR1	AMMERC1	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding
0.190881-35	chr13	74927817	74928316	+	0	NA	Intergenic	Intergenic	65186	NR_144452	100288208	Hs.532467	NM_001013669		LOC100288208	-	uncharacterized LOC100288208	ncRNA
25.6067-3	chr2	102232719	102233218	+	0	NA	Intergenic	Intergenic	-81197	NM_004834	9448	Hs.701013	NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
49.8297-3	chr15	94010477	94010976	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-378283	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
11.4327-4	chr17	48153801	48154300	+	0	NA	intron (NM_002204, intron 14 of 25)	intron (NM_002204, intron 14 of 25)	-18051	NM_001199898	5164	Hs.256667	NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
1.72631-11	chr11	69459015	69459514	+	0	NA	intron (NM_053056, intron 3 of 4)	intron (NM_053056, intron 3 of 4)	3391	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
0.639892-3	chr5	16489259	16489909	+	0	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	19523	NM_019000	54463	Hs.481704	NM_019000	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134 member B	protein-coding
5.54396-7	chr13	107187099	107187598	+	0	NA	promoter-TSS (NM_004093)	promoter-TSS (NM_004093)	40	NM_004093	1948	Hs.149239	NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5	ephrin B2	protein-coding
1.2436-19	chr15	75497010	75497509	+	0	NA	intron (NM_015492, intron 1 of 2)	intron (NM_015492, intron 1 of 2)	3038	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
2.652-4	chr2	194007171	194007670	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	392849	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
2.13959-4	chr4	52708310	52708809	+	0	NA	promoter-TSS (NM_001040402)	promoter-TSS (NM_001040402)	-607	NM_015115	23142	Hs.605388	NM_015115	ENSG00000109184	DCUN1D4	-	defective in cullin neddylation 1 domain containing 4	protein-coding
1.49967-4	chr3	3168324	3169722	+	0	NA	intron (NM_182916, intron 1 of 7)	CpG	423	NM_182916	51095	Hs.732725	NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
12.0135-2	chr14	100621284	100621783	+	0	NA	intron (NM_206918, intron 1 of 2)	MamRep1161|DNA|TcMar	4479	NM_206918	123099	Hs.159643	NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
4.08935-15	chr6	137143451	137143950	+	0	NA	promoter-TSS (NM_000288)	promoter-TSS (NM_000288)	-2	NM_000288	5191	Hs.280932	NM_000288	ENSG00000112357	PEX7	PBD9B|PTS2R|RCDP1|RD	peroxisomal biogenesis factor 7	protein-coding
4.54693-5	chr8	1959267	1959766	+	0	NA	Intergenic	Intergenic	-33642	NM_003970	9172	Hs.443683	NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
0.123337-46	chr7	24859796	24860295	+	0	NA	intron (NR_104112, intron 14 of 20)	intron (NR_104112, intron 14 of 20)	-62406	NM_001127454	1687	Hs.520708	NM_004403	ENSG00000105928	DFNA5	ICERE-1	DFNA5, deafness associated tumor suppressor	protein-coding
1.39662-34	chr18	45606817	45607316	+	0	NA	intron (NM_001318841, intron 3 of 4)	intron (NM_001318841, intron 3 of 4)	56614	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
0.0744648-9	chr13	25302029	25302528	+	0	NA	Intergenic	AluSx3|SINE|Alu	-36023	NM_031277	56163	Hs.97464	NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
0.985417-13	chr16	4459250	4459749	+	0	NA	intron (NR_145128, intron 3 of 27)	MIRb|SINE|MIR	6435	NR_145128	79585	Hs.437957	NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
5.05845-22	chr10	71905374	71906220	+	0	NA	exon (NM_001040273, exon 1 of 2)	exon (NM_001040273, exon 1 of 2)	699	NR_073591	219743	Hs.533655	NM_173555	ENSG00000156521	TYSND1	NET41	trypsin domain containing 1	protein-coding
1.75874-3	chr19	919304	919803	+	0	NA	exon (NM_032551, exon 3 of 5)	exon (NM_032551, exon 3 of 5)	2211	NM_032551	84634	Hs.208229	NM_032551	ENSG00000116014	KISS1R	AXOR12|CPPB1|GPR54|HH8|HOT7T175|KISS-1R	KISS1 receptor	protein-coding
3.85103-24	chr14	92653395	92653894	+	0	NA	Intergenic	SVA_A|Other|Other	65328	NM_001322272	53981	Hs.657632	NM_017437	ENSG00000165934	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2	protein-coding
1.96543	chr15	82727902	82728401	+	0	NA	intron (NM_001291420, intron 6 of 7)	intron (NM_001291420, intron 6 of 7)	5163	NM_001291420	440295	Hs.498322	NM_198181	ENSG00000197978	GOLGA6L9	GOLGA6L20	golgin A6 family-like 9	protein-coding
16.0206	chr2	140250721	140251220	+	0	NA	Intergenic	Intergenic	596076	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
9.1364-27	chr18	55102990	55103489	+	0	NA	exon (NM_004852, exon 1 of 2)	exon (NM_004852, exon 1 of 2)	322	NM_004852	9480	Hs.194725	NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
5.22879-19	chr20	58351721	58352220	+	0	NA	intron (NM_001199505, intron 7 of 12)	intron (NM_001199505, intron 7 of 12)	55705	NM_183246	116154	Hs.473218	NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
0.11441	chr9	100615628	100616127	+	0	NA	5' UTR (NM_004473, exon 1 of 1)	5' UTR (NM_004473, exon 1 of 1)	340	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
0.376307-4	chr3	186490494	186490993	+	0	NA	Intergenic	CpG	-10618	NM_001967	1974	Hs.518475	NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
4.30626-10	chr9	116172440	116173244	+	0	NA	promoter-TSS (NM_001278629)	promoter-TSS (NM_001278629)	-82	NM_001278629	257169	Hs.632691	NM_152786	ENSG00000157653	C9orf43	-	chromosome 9 open reading frame 43	protein-coding
7.12198	chr18	67341830	67342329	+	0	NA	intron (NM_152721, intron 3 of 7)	L2a|LINE|L2	204912	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
1.69411-11	chr3	14432493	14432992	+	0	NA	Intergenic	Intergenic	-11334	NM_003043	6533	Hs.529488	NM_003043	ENSG00000131389	SLC6A6	TAUT	solute carrier family 6 member 6	protein-coding
1.73277-15	chr17	75883470	75883969	+	0	NA	Intergenic	Intergenic	-3550	NR_028337	400624	Hs.514521	NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
6.8403-9	chr8	109260361	109261263	+	0	NA	intron (NM_001568, intron 1 of 12)	CpG	147	NM_001568	3646	Hs.405590	NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
3.12471	chr1	109152763	109153262	+	0	NA	intron (NM_001010883, intron 3 of 10)	L2a|LINE|L2	50041	NM_001010883	284611	Hs.200230	NM_001010883	ENSG00000162636	FAM102B	SYM-3B	family with sequence similarity 102 member B	protein-coding
1.92465-23	chr11	61275497	61275996	+	0	NA	promoter-TSS (NM_001145077)	promoter-TSS (NM_001145077)	-322	NR_039708	100616470		NR_039708	ENSG00000266006	MIR4488	mir-4488	microRNA 4488	ncRNA
0.310503-19	chr6	122218383	122218882	+	0	NA	Intergenic	Intergenic	461909	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
0.996329-28	chr10	135171075	135171574	+	0	NA	intron (NM_001301828, intron 1 of 5)	CpG-3580	205	NM_198472	282969	Hs.155823	NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
0.0612309-11	chr7	81710626	81711125	+	0	NA	intron (NM_000722, intron 7 of 38)	L4|LINE|RTE	72382	NR_110076	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA
0.670192-8	chr2	230645557	230646056	+	0	NA	intron (NM_001284215, intron 32 of 39)	intron (NM_001284215, intron 32 of 39)	-66520	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
0.163737-2	chr20	20185703	20186202	+	0	NA	intron (NM_015585, intron 17 of 26)	MIR|SINE|MIR	148662	NM_001167816	26074	Hs.729168	NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
8.50781-16	chr6	20900491	20900990	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	366052	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
3.21482-3	chr9	139737997	139738496	+	0	NA	promoter-TSS (NM_001080482)	promoter-TSS (NM_001080482)	-621	NM_001080482	389813	Hs.495485	NM_001080482	ENSG00000232434	C9orf172	-	chromosome 9 open reading frame 172	protein-coding
6.86133-7	chr3	142792759	142793258	+	0	NA	Intergenic	SVA_C|Other|Other	-45610	NM_004267	9435	Hs.8786	NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
1.19186-21	chr7	77427178	77427677	+	0	NA	promoter-TSS (NM_001127360)	promoter-TSS (NM_001127360)	320	NM_032936	85025	Hs.19025	NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
18.2974-4	chr7	4764327	4764826	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	42646	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
14.437	chr2	9034113	9034612	+	0	NA	intron (NR_135606, intron 4 of 12)	intron (NR_135606, intron 4 of 12)	-56607	NM_020738	57498	Hs.9873	NM_020738	ENSG00000134313	KIDINS220	ARMS	kinase D interacting substrate 220	protein-coding
0.741724-14	chr10	80866285	80866784	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	37742	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger MIZ-type containing 1	protein-coding
13.3724	chr11	76614378	76614877	+	0	NA	intron (NM_001300953, intron 1 of 9)	MER4D|LTR|ERV1	42710	NM_001300955	55331	Hs.23862	NM_018367	ENSG00000078124	ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
12.5885-4	chr18	33077252	33077751	+	0	NA	5' UTR (NM_001308064, exon 1 of 5)	5' UTR (NM_001308064, exon 1 of 5)	112	NM_001308064	125476	Hs.464903	NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
0.172766-33	chr5	129240204	129240703	+	0	NA	promoter-TSS (NM_175856)	promoter-TSS (NM_175856)	-70	NM_175856	337876	Hs.213137	NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
3.26979	chrX	68047556	68048055	+	0	NA	Intergenic	Intergenic	-1035	NM_004429	1947	Hs.144700	NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
8.26814-26	chr13	111162863	111163362	+	0	NA	intron (NM_001846, intron 47 of 47)	intron (NM_001846, intron 47 of 47)	-2586	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
7.77284-9	chr10	81903915	81904414	+	0	NA	intron (NR_138551, intron 3 of 3)	intron (NR_138551, intron 3 of 3)	11906	NM_001012973	219348	Hs.204947	NM_001012973	ENSG00000189129	PLAC9	-	placenta specific 9	protein-coding
4.64706-4	chr15	56599263	56599762	+	0	NA	Intergenic	Intergenic	-58110	NM_198524	374618	Hs.511476	NM_198524	ENSG00000151575	TEX9	-	testis expressed 9	protein-coding
2.83997-4	chr6	27640441	27640940	+	0	NA	Intergenic	L2|LINE|L2	-21124	NR_038293	100507173	Hs.635987	NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
0.545314-24	chr2	134535127	134535626	+	0	NA	Intergenic	Intergenic	-209345	NM_207363	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK associated protein 5	protein-coding
0.856568-8	chr3	128879975	128880474	+	0	NA	promoter-TSS (NM_001204890)	promoter-TSS (NM_001204890)	-151	NM_020701	57461	Hs.512661	NM_020701	ENSG00000240682	ISY1	FSAP33	ISY1 splicing factor homolog	protein-coding
0.0130484-42	chrX	1511293	1511792	+	0	NA	promoter-TSS (NM_001636)	promoter-TSS (NM_001636)	-503	NM_001636	293	Hs.350927	NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
0.942041-8	chr5	170038365	170038864	+	0	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	69860	NR_136214	105377716	Hs.570880	NR_136214	ENSG00000253591	LOC105377716	-	uncharacterized LOC105377716	ncRNA
4.78862-9	chr1	161147154	161147653	+	0	NA	5' UTR (NM_001199873, exon 1 of 8)	5' UTR (NM_001199873, exon 1 of 8)	355	NM_001199873	8703	Hs.321231	NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
1.06793-9	chr7	41980268	41980767	+	0	NA	Intergenic	Intergenic	-237811	NM_002192	3624	Hs.28792	NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin beta A subunit	protein-coding
3.31614-10	chr21	30384588	30385087	+	0	NA	intron (NM_001320724, intron 1 of 5)	SVA_D|Other|Other	6848	NM_016940	10069	Hs.713123	NM_016940	ENSG00000156253	RWDD2B	C21orf6|GL011	RWD domain containing 2B	protein-coding
18.2681	chr6	126188513	126189012	+	0	NA	intron (NM_001122842, intron 3 of 15)	intron (NM_001122842, intron 3 of 15)	-48758	NR_126386	104355145	Hs.590370	NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
6.9897-18	chr10	46222401	46222900	+	0	NA	promoter-TSS (NM_001330074)	promoter-TSS (NM_001330074)	2	NM_001169107	253725	Hs.365286	NM_015262	ENSG00000172661	WASHC2C	FAM21A|FAM21C|VPEF	WASH complex subunit 2C	protein-coding
0.462403-14	chr8	65953268	65953767	+	0	NA	Intergenic	Intergenic	139058	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA
4.28291-8	chr15	100665412	100665911	+	0	NA	intron (NM_139057, intron 12 of 21)	intron (NM_139057, intron 12 of 21)	216549	NM_139057	170691	Hs.513200	NM_139057	ENSG00000140470	ADAMTS17	-	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
5.867-3	chr20	45141957	45142456	+	0	NA	promoter-TSS (NM_001270497)	promoter-TSS (NM_001270497)	-8	NM_018102	55713	Hs.147041	NM_018102	ENSG00000198185	ZNF334	-	zinc finger protein 334	protein-coding
15.9346	chr18	48086220	48086719	+	0	NA	promoter-TSS (NM_001292040)	promoter-TSS (NM_001292040)	-15	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
3.40084-11	chr11	11809332	11809831	+	0	NA	Intergenic	Intergenic	-4812	NR_107037	102465870		NR_107037	ENSG00000278529	MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
2.79014-16	chr4	140971350	140971849	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	103634	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
3.93619-3	chr12	96275368	96275867	+	0	NA	intron (NM_182496, intron 10 of 15)	intron (NM_182496, intron 10 of 15)	22908	NM_003095	6636	Hs.105465	NM_003095	ENSG00000139343	SNRPF	SMF|Sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding
3.72634	chr19	53030280	53030779	+	0	NA	promoter-TSS (NM_001039886)	promoter-TSS (NM_001039886)	-380	NM_001321425	388558	Hs.729294	NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
0.94744-19	chr6	116783012	116783511	+	0	NA	exon (NM_001010919, exon 2 of 3)	exon (NM_001010919, exon 2 of 3)	728	NM_001010919	441168	Hs.381220	NM_001010919	ENSG00000188820	FAM26F	C6orf187|INAM|dJ93H18.5	family with sequence similarity 26 member F	protein-coding
3.88277	chr4	175684576	175685075	+	0	NA	intron (NM_001042543, intron 3 of 8)	intron (NM_001042543, intron 3 of 8)	65641	NM_006529	8001	Hs.413099	NM_006529	ENSG00000145451	GLRA3	-	glycine receptor alpha 3	protein-coding
2.76544-14	chr9	136326819	136327318	+	0	NA	intron (NM_001242370, intron 1 of 4)	intron (NM_001242370, intron 1 of 4)	1981	NM_001242370	11094	Hs.62003	NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
0.0921731-39	chr7	100808674	100809173	+	0	NA	promoter-TSS (NM_003378)	promoter-TSS (NM_003378)	-71	NM_003378	7425	Hs.587325	NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
0.366845-21	chr1	231174796	231175295	+	0	NA	intron (NM_198552, intron 1 of 1)	intron (NM_198552, intron 1 of 1)	950	NM_198552	375061	Hs.38516	NM_198552	ENSG00000182118	FAM89A	C1orf153	family with sequence similarity 89 member A	protein-coding
22.1753-4	chr3	172600943	172601442	+	0	NA	Intergenic	Intergenic	132717	NM_018098	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
4.08935-9	chr1	20810586	20811085	+	0	NA	intron (NM_018584, intron 1 of 1)	CpG	1893	NM_018584	55450	Hs.731383	NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
1.22629-8	chr1	37434217	37434716	+	0	NA	intron (NM_000831, intron 1 of 15)	intron (NM_000831, intron 1 of 15)	65378	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding
0.851282-20	chr1	110577575	110578074	+	0	NA	intron (NR_073071, intron 1 of 21)	CpG	601	NM_033088	85369	Hs.584996	NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
8.23909-5	chr6	24077124	24077623	+	0	NA	Intergenic	L1PB3|LINE|L1	-49041	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
1.17475-19	chr10	92617317	92617816	+	0	NA	5' UTR (NM_019859, exon 1 of 4)	5' UTR (NM_019859, exon 1 of 4)	105	NM_000872	3363	Hs.73739	NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
1.70053-9	chr8	17780429	17780928	+	0	NA	5' UTR (NM_001315507, exon 1 of 39)	5' UTR (NM_001315507, exon 1 of 39)	312	NM_006197	5108	Hs.491148	NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
3.15155-2	chr8	142411582	142412081	+	0	NA	Intergenic	Intergenic	-19657	NM_007079	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
1.37272-20	chr9	139421376	139421875	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-7547	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
0.91515-6	chr9	136023739	136024238	+	0	NA	intron (NM_001042368, intron 1 of 17)	(TG)n|Simple_repeat|Simple_repeat	619	NM_001042368	5900	Hs.106185	NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
3.21482-4	chr10	95225398	95225897	+	0	NA	intron (NM_013451, intron 1 of 53)	intron (NM_013451, intron 1 of 53)	16427	NM_133337	26509	Hs.602086	NM_013451	ENSG00000138119	MYOF	FER1L3	myoferlin	protein-coding
0.227338-4	chr2	189157286	189157785	+	0	NA	non-coding (NR_045563, exon 1 of 13)	non-coding (NR_045563, exon 1 of 13)	145	NR_045563	51454	Hs.470887	NM_016315	ENSG00000144366	GULP1	CED-6|CED6|GULP	GULP, engulfment adaptor PTB domain containing 1	protein-coding
7.47147-19	chr7	141211120	141211619	+	0	NA	Intergenic	Intergenic	-39709	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
0.777937-3	chr12	131975128	131975627	+	0	NA	Intergenic	L2a|LINE|L2	143362	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
1.25518-13	chr12	112819287	112819786	+	0	NA	intron (NM_001109662, intron 1 of 75)	CpG	360	NM_001109662	283450	Hs.530943	NM_173813	ENSG00000173064	HECTD4	C12orf51|POTAGE	HECT domain E3 ubiquitin protein ligase 4	protein-coding
11.7522-2	chr11	58912007	58912506	+	0	NA	promoter-TSS (NM_001312911)	promoter-TSS (NM_001312911)	4	NM_198847	63901	Hs.150651	NM_022074	ENSG00000166801	FAM111A	GCLEB|KCS2	family with sequence similarity 111 member A	protein-coding
1.15771-8	chr22	35709473	35709972	+	0	NA	intron (NR_024194, intron 1 of 14)	intron (NR_024194, intron 1 of 14)	13925	NM_001135732	10043	Hs.474705	NM_005488	ENSG00000100284	TOM1	-	target of myb1 membrane trafficking protein	protein-coding
2.58848-10	chrX	134094692	134095191	+	0	NA	Intergenic	SVA_D|Other|Other	11362	NR_134925	340581	Hs.434754	NR_134925	ENSG00000236091	LOC340581	-	uncharacterized LOC340581	ncRNA
0.376307-46	chr7	27196052	27196551	+	0	NA	promoter-TSS (NM_006896)	promoter-TSS (NM_006896)	-5	NM_006896	3204	Hs.610216	NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
2.03426-3	chr10	25305233	25306178	+	0	NA	promoter-TSS (NR_072992)	promoter-TSS (NR_072992)	197	NM_024838	79896	Hs.645274	NM_024838	ENSG00000185875	THNSL1	TSH1	threonine synthase like 1	protein-coding
0.899095-8	chr5	145826861	145827360	+	0	NA	intron (NM_001040006, intron 1 of 20)	CpG	237	NM_001040006	10915	Hs.443465	NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
5.22879-18	chr8	63586632	63587131	+	0	NA	intron (NR_130764, intron 3 of 6)	intron (NR_130764, intron 3 of 6)	-303539	NR_027378	643763	Hs.491856	NM_001039769	ENSG00000274956	UG0898H09	-	uncharacterized LOC643763	ncRNA
0.48177-14	chr2	208029608	208030107	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	883	NM_003709	8609	Hs.59908	NM_003709	ENSG00000118263	KLF7	UKLF	Kruppel like factor 7	protein-coding
2.67606-2	chr15	69744913	69745412	+	0	NA	promoter-TSS (NM_001003)	promoter-TSS (NM_001003)	3	NM_001003	6176	Hs.356502	NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
5.81699-2	chr9	6758109	6759071	+	0	NA	intron (NM_015061, intron 1 of 21)	CpG	949	NR_130707	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
0.496351-2	chr11	56883967	56884466	+	0	NA	Intergenic	Intergenic	-65005	NM_001005210	219527	Hs.199853	NM_001005210	ENSG00000183908	LRRC55	-	leucine rich repeat containing 55	protein-coding
0.390538-4	chr13	114756742	114757241	+	0	NA	intron (NM_007368, intron 22 of 23)	intron (NM_007368, intron 22 of 23)	86463	NM_001320822	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
0.109954-17	chr19	2611071	2611570	+	0	NA	intron (NM_052847, intron 2 of 4)	CpG	-19393	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
4.93495	chr7	126443060	126443559	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	254929	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
6.34512-15	chr7	135011571	135012070	+	0	NA	Intergenic	Intergenic	95089	NM_182489	346673	Hs.592279	NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
7.23538-12	chr6	19354320	19354819	+	0	NA	Intergenic	Intergenic	-95483	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
6.16185-6	chr12	123391746	123392245	+	0	NA	Intergenic	AluSx|SINE|Alu	-11283	NM_024667	79720	Hs.507162	NM_024667	ENSG00000139722	VPS37B	-	VPS37B, ESCRT-I subunit	protein-coding
4.55932-5	chr14	87873547	87874046	+	0	NA	Intergenic	Intergenic	501674	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
0.227338-13	chr12	80082654	80083153	+	0	NA	intron (NM_002583, intron 2 of 6)	intron (NM_002583, intron 2 of 6)	1887	NM_002583	5074	Hs.643130	NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding
4.52225-11	chr11	93863078	93863577	+	0	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	1233	NM_015368	24145	Hs.591976	NM_015368	ENSG00000110218	PANX1	MRS1|PX1|UNQ2529	pannexin 1	protein-coding
10.7469	chr22	18424111	18424610	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-34708	NM_001122731	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
0.423927-12	chr3	178789034	178789813	+	0	NA	5' UTR (NM_022470, exon 1 of 6)	5' UTR (NM_022470, exon 1 of 6)	233	NM_022470	64393	Hs.371609	NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
1.24939-13	chr9	109095713	109096212	+	0	NA	Intergenic	Intergenic	-267247	NR_107048	102465995		NR_107048	ENSG00000277889	MIR8081	hsa-mir-8081	microRNA 8081	ncRNA
8.86057-12	chr20	10055115	10055614	+	0	NA	intron (NR_040710, intron 3 of 4)	intron (NR_040710, intron 3 of 4)	39717	NM_022096	63926	Hs.70903	NM_022096	ENSG00000132623	ANKEF1	ANKRD5	ankyrin repeat and EF-hand domain containing 1	protein-coding
1.00727-16	chr20	44881972	44882471	+	0	NA	intron (NM_021248, intron 1 of 11)	intron (NM_021248, intron 1 of 11)	54916	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
0.75204-5	chr14	74790476	74790975	+	0	NA	Intergenic	MIRb|SINE|MIR	-20958	NR_003256	5826	Hs.94395	NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
0.195421-22	chr22	23546837	23547336	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	24534	NM_004327	613	Hs.517461	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR, RhoGEF and GTPase activating protein	protein-coding
0.409586-4	chr1	244012602	244013101	+	0	NA	Intergenic	CpG	-5965	NM_001206729	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
0.390538-5	chr2	73340329	73340828	+	0	NA	promoter-TSS (NM_015470)	promoter-TSS (NM_015470)	-432	NM_015470	26056	Hs.24557	NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|pp75	RAB11 family interacting protein 5	protein-coding
7.79892-5	chr6	90539441	90539940	+	0	NA	promoter-TSS (NM_001137667)	promoter-TSS (NM_001137667)	71	NM_001137668	9994	Hs.558218	NM_012115	ENSG00000118412	CASP8AP2	CED-4|FLASH|RIP25	caspase 8 associated protein 2	protein-coding
0.231917-19	chrX	96927098	96927597	+	0	NA	Intergenic	Intergenic	-107813	NR_125391	10824	Hs.654372	NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
1.64944-15	chr5	146345521	146346020	+	0	NA	intron (NM_001271900, intron 2 of 10)	intron (NM_001271900, intron 2 of 10)	-46701	NR_047115	100874361	Hs.193825	NR_047115	ENSG00000249553	PPP2R2B-IT1	-	PPP2R2B intronic transcript 1	ncRNA
2.60428-8	chr8	54755528	54756027	+	0	NA	promoter-TSS (NM_015941)	promoter-TSS (NM_015941)	94	NM_015941	51606	Hs.491737	NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
8.66461-2	chr8	143762543	143763042	+	0	NA	non-coding (NR_033343, exon 2 of 3)	non-coding (NR_033343, exon 2 of 3)	918	NM_005672	8000	Hs.652235	NM_005672	ENSG00000167653	PSCA	PRO232	prostate stem cell antigen	protein-coding
2.28413-3	chr5	180649143	180649898	+	0	NA	promoter-TSS (NM_201627)	promoter-TSS (NM_201627)	113	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA
3.99027-23	chr1	203020798	203021297	+	0	NA	intron (NM_001304331, intron 14 of 29)	intron (NM_001304331, intron 14 of 29)	25398	NM_001304331	8497	Hs.153648	NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
30.1637	chr2	121469659	121470158	+	0	NA	Intergenic	Intergenic	-84959	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
3.43902	chr6	88412138	88412637	+	0	NA	promoter-TSS (NM_018064)	promoter-TSS (NM_018064)	-402	NM_018064	55122	Hs.485915	NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
0.362122-4	chr20	5591439	5591938	+	0	NA	promoter-TSS (NM_019593)	promoter-TSS (NM_019593)	-16	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
0.574959-14	chr13	101298418	101298917	+	0	NA	intron (NM_032813, intron 6 of 18)	intron (NM_032813, intron 6 of 18)	28522	NM_001286453	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
14.4612-2	chrX	152780464	152780963	+	0	NA	Intergenic	Intergenic	-19730	NR_073156	55559	Hs.170835	NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
0.145735-10	chr2	27071986	27072485	+	0	NA	intron (NM_001253724, intron 1 of 12)	CpG	943	NM_001253724	56896	Hs.299315	NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase like 5	protein-coding
2.99296-16	chr19	14869605	14870104	+	0	NA	intron (NM_001271052, intron 10 of 18)	LTR9|LTR|ERV1	17885	NM_001271052	30817	Hs.531619	NM_013447	ENSG00000127507	ADGRE2	CD312|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
0.979971-13	chr12	26350725	26351224	+	0	NA	intron (NM_005086, intron 1 of 2)	intron (NM_005086, intron 1 of 2)	2468	NM_005086	8082	Hs.183428	NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
5.55955-5	chr6	2902910	2903409	+	0	NA	intron (NM_004155, intron 1 of 6)	intron (NM_004155, intron 1 of 6)	387	NM_004155	5272	Hs.104879	NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
2.54925-13	chr11	69258046	69258545	+	0	NA	Intergenic	CpG	17856	NM_001319657	102724265	Hs.448669	NM_001319657	ENSG00000255980	LOC102724265	-	uncharacterized LOC102724265	protein-coding
0.942041-6	chr17	17208682	17209181	+	0	NA	intron (NM_020201, intron 1 of 4)	intron (NM_020201, intron 1 of 4)	2251	NM_020201	56953	Hs.513977	NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
6.47817-7	chr15	63732017	63732516	+	0	NA	Intergenic	Intergenic	49837	NR_120375	102723344	Hs.569500	NR_120375		LOC102723344	-	uncharacterized LOC102723344	ncRNA
11.9044-4	chr1	29816781	29817280	+	0	NA	Intergenic	Intergenic	-140404	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LINC01756	-	long intergenic non-protein coding RNA 1756	ncRNA
0.0524306-13	chr5	10441691	10442190	+	0	NA	promoter-TSS (NR_102746)	promoter-TSS (NR_102746)	23	NR_102746	100505845	Hs.599395	NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
0.195421-18	chr5	62015730	62016229	+	0	NA	Intergenic	Intergenic	141417	NR_073584	101180901	Hs.482269	NR_073584	ENSG00000086200	IPO11-LRRC70	-	IPO11-LRRC70 readthrough	ncRNA
26.0033-2	chr11	43946626	43947125	+	0	NA	Intergenic	Intergenic	-4381	NR_038907	100507300	Hs.664588	NR_038907	ENSG00000244926	ALKBH3-AS1	-	ALKBH3 antisense RNA 1	ncRNA
2.51037-3	chr1	24542720	24543219	+	0	NA	Intergenic	Intergenic	16239	NR_027087	284632	Hs.638906	NR_027087	ENSG00000230023	LOC284632	-	uncharacterized LOC284632	ncRNA
5.17126-2	chr2	141453949	141454448	+	0	NA	intron (NM_018557, intron 41 of 90)	MER1B|DNA|hAT-Charlie	-109944	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA
0.222764-10	chr2	187351045	187351544	+	0	NA	intron (NM_018471, intron 1 of 9)	CpG	409	NM_018471	55854	Hs.741180	NM_018471	ENSG00000065548	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
9.82967-3	chr6	71998768	71999267	+	0	NA	intron (NM_024576, intron 1 of 6)	CpG	872	NM_001324266	79627	Hs.648434	NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
6.9897-15	chr11	86246061	86246560	+	0	NA	intron (NM_001014811, intron 3 of 13)	intron (NM_001014811, intron 3 of 13)	136930	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
5.73489-4	chr16	62070329	62070828	+	0	NA	5' UTR (NM_001796, exon 1 of 12)	5' UTR (NM_001796, exon 1 of 12)	161	NM_001796	1006	Hs.368322	NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
1.73925-12	chrX	49028737	49029236	+	0	NA	intron (NM_002668, intron 1 of 4)	CpG	802	NM_002668	5355	Hs.77422	NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
1.39662-25	chr6	74218422	74218921	+	0	NA	Intergenic	Intergenic	9490	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
0.296531-86	chr6	35722503	35723319	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	18102	NM_145028	221481	Hs.533066	NM_145028	ENSG00000157343	ARMC12	C6orf81	armadillo repeat containing 12	protein-coding
3.92545	chr3	171261912	171262411	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-83964	NM_001161561	23043	Hs.34024	NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
2.81498-11	chr15	74515627	74516126	+	0	NA	Intergenic	Intergenic	-12754	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
1.14639-10	chr6	7109630	7110129	+	0	NA	intron (NM_001003700, intron 1 of 11)	intron (NM_001003700, intron 1 of 11)	1793	NM_001003698	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
0.550241-30	chr13	72649861	72650360	+	0	NA	Intergenic	Intergenic	-208780	NM_080759	1602	Hs.129452	NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding
0.419142-18	chr1	101004774	101005677	+	0	NA	exon (NM_022049, exon 2 of 2)	exon (NM_022049, exon 2 of 2)	1497	NM_022049	54112	Hs.170053	NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
1.10138-7	chr6	119815343	119815842	+	0	NA	Intergenic	L2a|LINE|L2	-3125	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
3.65523-8	chrX	100226687	100227186	+	0	NA	intron (NR_103708, intron 1 of 8)	SVA_F|Other|Other	2239	NR_103708	392509	Hs.147237	NM_001162491	ENSG00000174225	ARL13A	ARL13|dJ341D10.2	ADP ribosylation factor like GTPase 13A	protein-coding
11.5552-3	chr7	105699298	105699797	+	0	NA	Intergenic	Intergenic	53244	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
0.736576-7	chr15	44581376	44581875	+	0	NA	intron (NM_138423, intron 1 of 9)	intron (NM_138423, intron 1 of 9)	716	NM_177974	113201	Hs.512867	NM_138423	ENSG00000166734	CASC4	H63	cancer susceptibility candidate 4	protein-coding
0.0877392-32	chr6	84743984	84744483	+	0	NA	intron (NM_001346544, intron 1 of 3)	(CCCCG)n|Simple_repeat|Simple_repeat	395	NM_001346544	112609	Hs.370055	NM_138409	ENSG00000135324	MRAP2	C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
1.52427-18	chr13	79979108	79979607	+	0	NA	intron (NM_001286631, intron 1 of 21)	intron (NM_001286631, intron 1 of 21)	999	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
1.73925-3	chr12	22696524	22697023	+	0	NA	intron (NM_001286176, intron 2 of 26)	intron (NM_001286176, intron 2 of 26)	707	NM_014802	9847	Hs.271014	NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
1.99283-16	chr16	31498843	31499342	+	0	NA	intron (NR_130783, intron 7 of 11)	CpG-9158	4653	NM_003041	6524	Hs.709195	NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
0.589858-24	chr7	90226019	90226518	+	0	NA	intron (NM_001287135, intron 1 of 14)	CpG	592	NM_001287135	5218	Hs.258576	NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding
4.68521-15	chr3	100195706	100196205	+	0	NA	Intergenic	SVA_D|Other|Other	-15508	NM_018004	55076	Hs.658956	NM_018004	ENSG00000181458	TMEM45A	DERP7|DNAPTP4	transmembrane protein 45A	protein-coding
0.282604-9	chr11	19514921	19515420	+	0	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	13606	NR_049725	100874012	Hs.434602	NR_049725	ENSG00000255043	NAV2-AS5	-	NAV2 antisense RNA 5	ncRNA
0.381045-9	chr5	175442574	175443073	+	0	NA	Intergenic	AluJb|SINE|Alu	46235	NR_103794	100996385	Hs.382347	NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
5.45155-5	chr4_gl000193_random	84444	84943	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	3682	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
0.0436481-8	chr17	58155843	58156342	+	0	NA	promoter-TSS (NR_135648)	promoter-TSS (NR_135648)	200	NM_022070	63897	Hs.221899	NM_022070	ENSG00000068097	HEATR6	ABC1	HEAT repeat containing 6	protein-coding
1.07349-14	chr15	38546609	38547108	+	0	NA	intron (NM_152594, intron 1 of 6)	intron (NM_152594, intron 1 of 6)	1806	NM_152594	161742	Hs.525781	NM_152594	ENSG00000166068	SPRED1	NFLS|PPP1R147|hSpred1|spred-1	sprouty related EVH1 domain containing 1	protein-coding
6.09065-7	chr14	105487337	105487836	+	0	NA	promoter-TSS (NM_017955)	promoter-TSS (NM_017955)	-161	NM_145701	55038	Hs.34045	NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
2.22573-14	chr8	143291469	143291968	+	0	NA	Intergenic	Intergenic	12001	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
3.80907-4	chr1	29665062	29665561	+	0	NA	intron (NR_110758, intron 1 of 2)	LTR5_Hs|LTR|ERVK	11315	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LINC01756	-	long intergenic non-protein coding RNA 1756	ncRNA
0.00869459-10	chr16	29801674	29802173	+	0	NA	promoter-TSS (NM_001256269)	promoter-TSS (NM_001256269)	-111	NM_007317	3835	Hs.612151	NM_007317	ENSG00000079616	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
1.83096-4	chr2	118760830	118761329	+	0	NA	intron (NM_019044, intron 3 of 23)	intron (NM_019044, intron 3 of 23)	10660	NM_019044	54520	Hs.107845	NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
3.44862	chr7	79907081	79907580	+	0	NA	Intergenic	Intergenic	96425	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
23.0103	chr1	74951157	74951656	+	0	NA	intron (NM_015978, intron 21 of 24)	MLT1E1A|LTR|ERVL-MaLR	-91708	NR_121671	101927320	Hs.662589	NR_121670	ENSG00000234497	ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
1.50581-8	chr10	102241197	102241696	+	0	NA	intron (NM_003393, intron 4 of 5)	intron (NM_003393, intron 4 of 5)	18634	NM_003393	7479	Hs.421281	NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
1.00179-3	chr2	161504618	161505117	+	0	NA	Intergenic	MER52D|LTR|ERV1	-154549	NM_002897	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
20.8513	chr7	9834350	9834849	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	160699	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
0.472076-28	chr2	193059462	193059961	+	0	NA	promoter-TSS (NM_001305145)	promoter-TSS (NM_001305145)	-52	NM_016192	23671	Hs.144513	NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding
1.9044-15	chr16	29984778	29985277	+	0	NA	promoter-TSS (NM_004783)	promoter-TSS (NM_004783)	-161	NM_016151	9344	Hs.291623	NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2	TAO kinase 2	protein-coding
0.423927-15	chr6	139694773	139695272	+	0	NA	exon (NM_006079, exon 2 of 2)	exon (NM_006079, exon 2 of 2)	328	NM_001168389	10370	Hs.82071	NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
10.6048	chr20	46535984	46536483	+	0	NA	Intergenic	Intergenic	-75737	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
0.132283-42	chr6	53702554	53703053	+	0	NA	intron (NM_018214, intron 1 of 13)	intron (NM_018214, intron 1 of 13)	43025	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
0.675262-20	chr9	92504143	92504642	+	0	NA	Intergenic	Intergenic	-227306	NR_109791	101927847	Hs.584312	NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
11.6558-2	chr1	204901742	204902241	+	0	NA	intron (NM_001160332, intron 2 of 27)	intron (NM_001160332, intron 2 of 27)	-11363	NM_001160331	23114	Hs.13349	NM_015090	ENSG00000163531	NFASC	NF|NRCAML	neurofascin	protein-coding
10.5257	chr7	158118641	158119140	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	206615	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
3.36299-17	chr7	115898539	115899038	+	0	NA	TTS (NM_015641)	TTS (NM_015641)	27930	NR_130923	102724434	Hs.667624	NR_130921	ENSG00000237870	LOC102724434	-	uncharacterized LOC102724434	ncRNA
0.347983-12	chr1	155178422	155178921	+	0	NA	promoter-TSS (NR_045553)	promoter-TSS (NR_045553)	181	NM_198883	4580	Hs.490874	NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding
5.39102-13	chr12	125009916	125010415	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	41845	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
11.1976-2	chr5	34616679	34617178	+	0	NA	Intergenic	Intergenic	-39505	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
15.8503	chr5	76376505	76377004	+	0	NA	promoter-TSS (NR_003014)	promoter-TSS (NR_003014)	-358	NR_003014	677828	Hs.693249	NR_003014	ENSG00000238961	SNORA47	HBI-115	small nucleolar RNA, H/ACA box 47	snoRNA
0.824945-11	chr11	117121331	117121830	+	0	NA	intron (NM_001278249, intron 6 of 14)	SVA_D|Other|Other	18128	NM_001077239	257160	Hs.591934	NM_207343	ENSG00000167257	RNF214	-	ring finger protein 214	protein-coding
0.145735-3	chr12	125669978	125670477	+	0	NA	Intergenic	CpG	120314	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
0.0130484-2	chr9	139921175	139921674	+	0	NA	promoter-TSS (NM_207511)	promoter-TSS (NM_207511)	-492	NM_207511	401563	Hs.522509	NM_207511		C9orf139	-	chromosome 9 open reading frame 139	protein-coding
16.0033	chr2	439008	439507	+	0	NA	Intergenic	Intergenic	-118944	NR_136168	105373352		NR_136168		LOC105373352	-	uncharacterized LOC105373352	ncRNA
0.231917-8	chr1	143915715	143916214	+	0	NA	Intergenic	CpG	-1117	NR_144320	728833	Hs.535577	NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
0.76756-28	chr14	24630116	24630615	+	0	NA	promoter-TSS (NM_006084)	promoter-TSS (NM_006084)	-57	NM_006084	10379	Hs.1706	NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
5.9176-9	chr1	8763271	8763770	+	0	NA	intron (NM_001042681, intron 1 of 22)	CpG	114179	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
1.79142	chr12	66627722	66628221	+	0	NA	intron (NM_001142523, intron 7 of 10)	intron (NM_001142523, intron 7 of 10)	-16891	NR_106757	102465249		NR_106757	ENSG00000090376	MIR6502	hsa-mir-6502	microRNA 6502	ncRNA
2.02732-4	chr1	68808279	68808778	+	0	NA	Intergenic	Intergenic	107114	NM_000329	6121	Hs.2133	NM_000329	ENSG00000116745	RPE65	BCO3|LCA2|RP20|mRPE65|rd12|sRPE65	RPE65, retinoid isomerohydrolase	protein-coding
0.186345-3	chr6	100455074	100455573	+	0	NA	intron (NR_038384, intron 2 of 2)	intron (NR_038384, intron 2 of 2)	-13209	NM_032503	84539	Hs.591342	NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
1.81115-8	chr16	22218155	22218654	+	0	NA	intron (NM_013302, intron 1 of 17)	intron (NM_013302, intron 1 of 17)	812	NM_013302	29904	Hs.498892	NM_013302	ENSG00000103319	EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
0.264104-6	chr4	137671953	137672452	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	-442708	NR_134640	729307	Hs.552764	NR_134640		LOC729307	-	uncharacterized LOC729307	ncRNA
1.28427-20	chr2	55496146	55496645	+	0	NA	promoter-TSS (NM_001321004)	promoter-TSS (NM_001321004)	-11	NM_001321004	4528	Hs.149894	NM_002453	ENSG00000085760	MTIF2	-	mitochondrial translational initiation factor 2	protein-coding
0.443122-2	chr11	66717421	66717920	+	0	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	8177	NM_000920	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
0.93665-15	chr2	10952309	10952808	+	0	NA	intron (NM_001282707, intron 1 of 13)	CpG	407	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
0.856568-29	chr8	135697967	135698466	+	0	NA	intron (NM_001289394, intron 1 of 16)	MIRb|SINE|MIR	10585	NM_001174158	57623	Hs.446172	NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
5.83359-2	chr2	153017518	153018017	+	0	NA	intron (NM_005843, intron 1 of 13)	SVA_D|Other|Other	14739	NM_005843	10254	Hs.17200	NM_005843	ENSG00000115145	STAM2	Hbp|STAM2A|STAM2B	signal transducing adaptor molecule 2	protein-coding
3.71611-2	chr7	146658670	146659169	+	0	NA	intron (NM_014141, intron 3 of 23)	intron (NM_014141, intron 3 of 23)	135782	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
3.74688-8	chr5	120965993	120966492	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-221408	NM_177478	94033	Hs.105324	NM_177478	ENSG00000181867	FTMT	MTF	ferritin mitochondrial	protein-coding
2.58848-4	chr14	78266321	78266820	+	0	NA	intron (NM_020421, intron 1 of 10)	CpG	144	NM_001142545	57143	Hs.413208	NM_020421	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
1.98596	chr9	7830604	7831103	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-31047	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
0.856568-31	chr4	109102778	109103277	+	0	NA	Intergenic	Intergenic	9751	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
4.4855-16	chr8	62381227	62381726	+	0	NA	intron (NM_173519, intron 5 of 5)	intron (NM_173519, intron 5 of 5)	180951	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
1.00179-8	chr19	6738370	6738869	+	0	NA	promoter-TSS (NM_001080452)	promoter-TSS (NM_001080452)	-986	NM_001080452	56927	Hs.167641	NM_020171	ENSG00000125734	GPR108	LUSTR2	G protein-coupled receptor 108	protein-coding
7.72113-4	chr16	50331345	50331844	+	0	NA	intron (NM_001286057, intron 7 of 18)	intron (NM_001286057, intron 7 of 18)	5067	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
0.101054-43	chr14	23952390	23952889	+	0	NA	Intergenic	Intergenic	13741	NM_001042635	25983	Hs.9043	NM_015514	ENSG00000129460	NGDN	C14orf120|CANu1|LCP5|NGD|lpd-2	neuroguidin	protein-coding
1.64309-6	chr8	128253553	128254052	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-3080	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLo-2|LINC01244	cancer susceptibility candidate 21 (non-protein coding)	ncRNA
2.47184-6	chr5	14664417	14664916	+	0	NA	promoter-TSS (NM_138348)	promoter-TSS (NM_138348)	-88	NM_138348	90268	Hs.406335	NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM	OTU deubiquitinase with linear linkage specificity	protein-coding
9.54677-2	chr5	128999976	129000475	+	0	NA	intron (NM_133638, intron 15 of 22)	intron (NM_133638, intron 15 of 22)	-83659	NM_001257308	100127206	Hs.582534	NM_001257308	ENSG00000186367	KIAA1024L	-	KIAA1024 like	protein-coding
4.7237-8	chr1	155197524	155198023	+	0	NA	promoter-TSS (NR_002188)	promoter-TSS (NR_002188)	-448	NR_002188	2630	Hs.719930	NR_002188	ENSG00000160766	GBAP1	GBAP	glucosylceramidase beta pseudogene 1	pseudo
3.18759-17	chr4	37455199	37455698	+	0	NA	promoter-TSS (NM_001104629)	promoter-TSS (NM_001104629)	-104	NM_001104629	55286	Hs.107527	NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
0.555173-24	chr4	177240468	177240967	+	0	NA	promoter-TSS (NM_021928)	promoter-TSS (NM_021928)	-373	NM_021928	60559	Hs.42194	NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22/23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
1.97911-2	chr8	145688079	145688578	+	0	NA	promoter-TSS (NM_001330618)	promoter-TSS (NM_001330618)	-94	NM_001330618	50626	Hs.459379	NM_032687	ENSG00000187954	CYHR1	CHRP	cysteine and histidine rich 1	protein-coding
7.72113-8	chr16	80060926	80061425	+	0	NA	Intergenic	Intergenic	232029	NR_104661	101928248	Hs.659802	NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
7.9588-17	chr4	54005945	54006444	+	0	NA	intron (NM_152540, intron 5 of 8)	SVA_B|Other|Other	226048	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
4.15669-6	chr2	135249288	135249787	+	0	NA	intron (NM_030923, intron 5 of 7)	intron (NM_030923, intron 5 of 7)	227034	NM_030923	81615	Hs.369471	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
0.958256-7	chr19	33168428	33168927	+	0	NA	3' UTR (NM_207391, exon 1 of 1)	3' UTR (NM_207391, exon 1 of 1)	2364	NM_207391	388531	Hs.528491	NM_207391	ENSG00000186326	RGS9BP	PERRS|R9AP|RGS9	regulator of G-protein signaling 9 binding protein	protein-coding
3.41989-14	chr2	168054490	168054989	+	0	NA	intron (NM_001199144, intron 1 of 8)	intron (NM_001199144, intron 1 of 8)	10946	NM_001199145	129446	Hs.73680	NM_152381	ENSG00000163092	XIRP2	CMYA3	xin actin binding repeat containing 2	protein-coding
0.51587-2	chr6	43827998	43828497	+	0	NA	Intergenic	Intergenic	-30518	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
1.42668-13	chr6	26925157	26925656	+	0	NA	intron (NR_026775, intron 1 of 2)	MER110|LTR|ERV1	634	NR_026775	100133205	Hs.526951	NR_026775	ENSG00000224843	LINC00240	C6orf41|NCRNA00240|bA373D17.1	long intergenic non-protein coding RNA 240	ncRNA
5.22879-3	chr12	53399800	53400299	+	0	NA	promoter-TSS (NM_001300821)	promoter-TSS (NM_001300821)	7	NM_001330654	1975	Hs.648394	NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
3.96856-2	chr19	7918078	7918577	+	0	NA	intron (NM_001159944, intron 9 of 18)	intron (NM_001159944, intron 9 of 18)	6941	NM_001159944	115704	Hs.26870	NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
7.4958-2	chr2	50851586	50852085	+	0	NA	intron (NM_001135659, intron 6 of 23)	intron (NM_001135659, intron 6 of 23)	71565	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA
3.72634-12	chr9	139496618	139497117	+	0	NA	Intergenic	Intergenic	14766	NR_135288	401561	Hs.609301	NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
21.6813	chr7	134208670	134209169	+	0	NA	Intergenic	AluJr|SINE|Alu	-3425	NM_020299	57016	Hs.116724	NM_020299	ENSG00000198074	AKR1B10	AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI	aldo-keto reductase family 1 member B10	protein-coding
1.79142-3	chr2	207938723	207939222	+	0	NA	non-coding (NR_073108, exon 5 of 5)	non-coding (NR_073108, exon 5 of 5)	35825	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
1.67491-17	chr13	114427868	114428367	+	0	NA	intron (NM_002929, intron 4 of 6)	CpG	25945	NR_028064	100130386	Hs.704121	NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
3.39135-11	chr15	66430359	66430858	+	0	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	98037	NR_036196	100422905		NR_036196	ENSG00000263512	MIR4311	-	microRNA 4311	ncRNA
9.95679-12	chr17	55213062	55213561	+	0	NA	Intergenic	Intergenic	50176	NM_001242902	8165	Hs.463506	NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
0.540393-23	chr9	21318218	21318717	+	0	NA	Intergenic	Intergenic	-13155	NM_002169	3442	Hs.37113	NM_002169	ENSG00000147873	IFNA5	IFN-alpha-5|IFN-alphaG|INA5|INFA5|leIF G	interferon alpha 5	protein-coding
0.296531-93	chr7	154794738	154795237	+	0	NA	promoter-TSS (NR_028090)	promoter-TSS (NR_028090)	-156	NR_028090	202781	Hs.193172	NR_028090	ENSG00000273344	PAXIP1-AS1	-	PAXIP1 antisense RNA 1 (head to head)	ncRNA
3.85103-12	chr11	123612146	123612645	+	0	NA	promoter-TSS (NM_001301780)	promoter-TSS (NM_001301780)	-4	NM_001301779	7753	Hs.112556	NM_003455	ENSG00000166261	ZNF202	ZKSCAN10|ZSCAN42	zinc finger protein 202	protein-coding
13.1336-2	chr3	10378843	10379342	+	0	NA	intron (NM_001330611, intron 19 of 21)	intron (NM_001330611, intron 19 of 21)	7179	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
4.7237-17	chr22	50944876	50945375	+	0	NA	intron (NM_033200, intron 2 of 13)	intron (NM_033200, intron 2 of 13)	1010	NM_033200	91289	Hs.150540	NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
0.296531-31	chr7_gl000195_random	137434	137933	+	0	NA	Intergenic	L1PA8|LINE|L1	-50948	NM_001347682	389831	Hs.743984	NM_001242480	ENSG00000276256	LOC389831	-	uncharacterized LOC389831	protein-coding
0.268721-28	chr15	53082478	53082977	+	0	NA	promoter-TSS (NM_004498)	promoter-TSS (NM_004498)	-518	NM_004498	3175	Hs.658573	NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
1.45087-22	chr2	62857905	62858404	+	0	NA	Intergenic	SVA_C|Other|Other	-42832	NM_001142615	23301	Hs.271667	NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
1.37272-11	chr7	126893311	126893810	+	0	NA	Intergenic	CpG-24841	-1132	NM_001127323	2918	Hs.449625	NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
6.47817-16	chr1	160919103	160919602	+	0	NA	non-coding (NR_110695, exon 6 of 6)	non-coding (NR_110695, exon 6 of 6)	5237	NM_080878	142683	Hs.385631	NM_080878	ENSG00000158764	ITLN2	HL-2|HL2	intelectin 2	protein-coding
14.6218	chr11	44979319	44979818	+	0	NA	Intergenic	Intergenic	-6711	NM_001258324	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
25.817	chr1	240156549	240157048	+	0	NA	Intergenic	Intergenic	-14026	NR_036695	645884	Hs.613280	NR_036695		RPS7P5	RPS7_2_183	ribosomal protein S7 pseudogene 5	pseudo
1.16907-2	chr7	48128878	48129377	+	0	NA	intron (NM_001287430, intron 1 of 5)	CpG	276	NR_109837	7378	Hs.488240	NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
0.856568-5	chr5	70882821	70883320	+	0	NA	promoter-TSS (NM_022132)	promoter-TSS (NM_022132)	-45	NM_022132	64087	Hs.604789	NM_022132	ENSG00000131844	MCCC2	MCCB	methylcrotonoyl-CoA carboxylase 2	protein-coding
0.0217692-25	chr8	40651646	40652145	+	0	NA	intron (NM_001135731, intron 2 of 5)	intron (NM_001135731, intron 2 of 5)	103448	NM_001135731	79698	Hs.591850	NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
3.81952-12	chr9	94896148	94896647	+	0	NA	intron (NR_015444, intron 2 of 12)	intron (NR_015444, intron 2 of 12)	1281	NR_015444	100128076	Hs.716275	NR_015444		LOC100128076	-	protein tyrosine phosphatase pseudogene	pseudo
7.16699-14	chr16	4071015	4071514	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	-70819	NR_120311	102724927	Hs.364739	NR_120311	ENSG00000262185	LOC102724927	-	uncharacterized LOC102724927	ncRNA
11.0018	chr1	40221531	40222355	+	0	NA	TTS (NM_001720)	TTS (NM_001720)	15077	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
10.7624-3	chr12	3770128	3770627	+	0	NA	intron (NM_032680, intron 7 of 10)	MamRep1527|LTR|LTR	91989	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
4.13413-9	chr14	20911524	20912023	+	0	NA	Intergenic	SVA_B|Other|Other	-7972	NM_001109997	123103	Hs.556014	NM_001109997	ENSG00000185271	KLHL33	-	kelch like family member 33	protein-coding
0.168249-3	chr19	49314036	49314535	+	0	NA	promoter-TSS (NM_001190)	promoter-TSS (NM_001190)	35	NM_001284325	587	Hs.512670	NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|PP18	branched chain amino acid transaminase 2	protein-coding
0.665127	chr13	81553113	81553612	+	0	NA	Intergenic	Intergenic	-39164	NR_125770	103724386	Hs.539622	NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
1.88425-21	chr6	91653486	91653985	+	0	NA	Intergenic	Intergenic	-356715	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
2.93282-11	chr2	222030940	222031439	+	0	NA	Intergenic	Intergenic	405889	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
14.034-2	chrX	49742188	49742687	+	0	NA	intron (NM_001127899, intron 3 of 14)	intron (NM_001127899, intron 3 of 14)	-25317	NR_030241	693124		NR_030241	ENSG00000207758	MIR532	MIRN532|hsa-mir-532|mir-532	microRNA 532	ncRNA
20.57-4	chr3	11952718	11953217	+	0	NA	Intergenic	Intergenic	-64574	NR_135609	132001	Hs.475472	NM_138807	ENSG00000144559	TAMM41	C3orf31|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
3.21482-5	chr17	1732973	1733472	+	0	NA	promoter-TSS (NM_002945)	promoter-TSS (NM_002945)	-47	NM_052928	114826	Hs.514602	NM_052928	ENSG00000186532	SMYD4	ZMYND21	SET and MYND domain containing 4	protein-coding
14.0894-2	chr16	77310666	77311165	+	0	NA	Intergenic	Intergenic	77566	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
1.63676-2	chr12	30907646	30908145	+	0	NA	promoter-TSS (NM_001319844)	promoter-TSS (NM_001319844)	-11	NM_001319846	65981	Hs.234355	NM_023925	ENSG00000110888	CAPRIN2	C1QDC1|EEG-1|EEG1|RNG140	caprin family member 2	protein-coding
8.56985-12	chr11	110333797	110334296	+	0	NA	3' UTR (NM_004109, exon 4 of 4)	3' UTR (NM_004109, exon 4 of 4)	33385	NM_004109	2230	Hs.744	NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
57.122	chr14	21069105	21069604	+	0	NA	intron (NR_122043, intron 3 of 4)	HERVL18-int|LTR|ERVL	-10372	NM_001024822	493901	Hs.729466	NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
1.15771-16	chr1	11767662	11768161	+	0	NA	intron (NM_198545, intron 2 of 6)	intron (NM_198545, intron 2 of 6)	16130	NM_198545	374946	Hs.632364	NM_198545	ENSG00000162490	DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
0.48177-24	chr6	38104278	38104777	+	0	NA	intron (NM_021943, intron 5 of 5)	intron (NM_021943, intron 5 of 5)	317220	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
5.31653-2	chr14	102945929	102946428	+	0	NA	intron (NM_014844, intron 17 of 19)	intron (NM_014844, intron 17 of 19)	29950	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
1.42668-11	chr8	125699532	125700031	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	40967	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
3.99027-22	chr8	12050700	12051199	+	0	NA	intron (NM_001083537, intron 1 of 6)	intron (NM_001083537, intron 1 of 6)	675	NM_001083537	85002	Hs.675799	NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
1.50581-37	chr12	49829402	49829901	+	0	NA	intron (NM_001293285, intron 3 of 14)	SVA_D|Other|Other	46694	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
2.0412-10	chr8	39508795	39509294	+	0	NA	intron (NM_014237, intron 12 of 19)	LTR5_Hs|LTR|ERVK	66957	NM_001320313	8749	Hs.127930	NM_014237	ENSG00000168619	ADAM18	ADAM27|tMDCIII	ADAM metallopeptidase domain 18	protein-coding
1.06793-6	chr14	58449465	58449964	+	0	NA	Intergenic	Intergenic	-117122	NM_001306087	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35 member F4	protein-coding
9.24453-15	chr8	119805342	119805841	+	0	NA	Intergenic	Intergenic	158792	NM_002546	4982	Hs.81791	NM_002546	ENSG00000164761	TNFRSF11B	OCIF|OPG|PDB5|TR1	TNF receptor superfamily member 11b	protein-coding
12.8567-5	chr2	54653965	54654464	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-29240	NM_003128	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
9.87163-12	chr8	356737	357236	+	0	NA	5' UTR (NM_012173, exon 1 of 9)	5' UTR (NM_012173, exon 1 of 9)	178	NM_012173	26260	Hs.438454	NM_012173	ENSG00000147364	FBXO25	FBX25	F-box protein 25	protein-coding
0.467237-19	chr5	82770163	82770662	+	0	NA	intron (NM_001164097, intron 1 of 13)	CpG	2919	NM_001164097	1462	Hs.643801	NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
0.25028-34	chr11	130297805	130298693	+	0	NA	5' UTR (NM_007037, exon 1 of 9)	5' UTR (NM_007037, exon 1 of 9)	639	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
11.0018-3	chr3	194821554	194822053	+	0	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	6486	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
12.5964-3	chr9	34126284	34126783	+	0	NA	5' UTR (NM_015397, exon 1 of 9)	5' UTR (NM_015397, exon 1 of 9)	238	NM_015397	25853	Hs.493750	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
0.11441-8	chr22	41047584	41048083	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-15110	NM_020831	57591	Hs.654688	NM_020831	ENSG00000196588	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
5.83359-26	chr20	42718547	42719046	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	97422	NM_020433	57158	Hs.441737	NM_020433	ENSG00000149596	JPH2	CMH17|JP-2|JP2	junctophilin 2	protein-coding
0.301184-22	chr1	176965614	176966113	+	0	NA	intron (NM_207108, intron 8 of 21)	intron (NM_207108, intron 8 of 21)	32718	NR_030163	574441		NR_030163	ENSG00000202609	MIR488	MIRN488|hsa-mir-488|mir-488	microRNA 488	ncRNA
0.154727-10	chr18	70320179	70320678	+	0	NA	Intergenic	Intergenic	-108705	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
0.376307-38	chr14	100778582	100779081	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	4635	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
2.39578-7	chr3	197676715	197677214	+	0	NA	promoter-TSS (NM_001323030)	promoter-TSS (NM_001323030)	-88	NM_000996	6165	Hs.529631	NM_000996	ENSG00000182899	RPL35A	DBA5|L35A	ribosomal protein L35a	protein-coding
1.11821-4	chr11	134285243	134285742	+	0	NA	Intergenic	Intergenic	-3680	NM_054025	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
0.118872-49	chr2	18061097	18061596	+	0	NA	intron (NM_002252, intron 1 of 2)	intron (NM_002252, intron 1 of 2)	1422	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
6.0206-6	chr14	81687175	81687674	+	0	NA	promoter-TSS (NM_001278940)	promoter-TSS (NM_001278940)	-128	NM_001278940	2957	Hs.592334	NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
0.419142-35	chr9	120174258	120174757	+	0	NA	intron (NM_014010, intron 1 of 21)	intron (NM_014010, intron 1 of 21)	2810	NM_014010	23245	Hs.601562	NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
4.11168-10	chr3	196050558	196051057	+	0	NA	TTS (NR_121665)	TTS (NR_121665)	5604	NR_046724	100874214	Hs.672105	NR_046724	ENSG00000235897	TM4SF19-AS1	-	TM4SF19 antisense RNA 1	ncRNA
0.888424	chr14	100287172	100287671	+	0	NA	intron (NM_001008707, intron 1 of 22)	AluJo|SINE|Alu	27676	NM_001008707	2009	Hs.12451	NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
1.41463-12	chr9	139980948	139981447	+	0	NA	promoter-TSS (NM_016219)	promoter-TSS (NM_016219)	72	NR_027447	100289341	Hs.593896	NR_027447	ENSG00000268996	MAN1B1-AS1	-	MAN1B1 antisense RNA 1 (head to head)	ncRNA
10.2872	chr12	98576562	98577061	+	0	NA	Intergenic	Intergenic	-187585	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA
1.75874-23	chr15	74614831	74615330	+	0	NA	intron (NM_182791, intron 1 of 8)	intron (NM_182791, intron 1 of 8)	4198	NM_182791	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
4.12289	chr7	104619677	104620176	+	0	NA	Intergenic	Intergenic	11686	NR_039981	100216546	Hs.369356	NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
0.594835-2	chr4	8637811	8638310	+	0	NA	Intergenic	Intergenic	43673	NM_001014448	8532	Hs.61995	NM_003652	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
4.49772-6	chr8	126442758	126443257	+	0	NA	5' UTR (NM_025195, exon 1 of 3)	5' UTR (NM_025195, exon 1 of 3)	444	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
3.15155-9	chr4	88141984	88142483	+	0	NA	promoter-TSS (NM_001292006)	promoter-TSS (NM_001292006)	-473	NM_001292007	57563	Hs.106601	NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
1.29596-17	chr21	33984284	33984783	+	0	NA	non-coding (NR_036552, exon 1 of 6)	non-coding (NR_036552, exon 1 of 6)	380	NR_036552	56683	Hs.5811	NM_017835	ENSG00000159079	C21orf59	C21orf48|CILD26|FBB18|Kur	chromosome 21 open reading frame 59	protein-coding
1.69411-9	chr20	25565200	25565699	+	0	NA	intron (NM_025176, intron 1 of 23)	CpG	718	NM_025176	22981	Hs.631508	NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding
7.72113	chr7	107994046	107994545	+	0	NA	intron (NM_005010, intron 2 of 27)	MIRb|SINE|MIR	102546	NM_001193583	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
1.4813-6	chr2	166428605	166429104	+	0	NA	promoter-TSS (NM_024969)	promoter-TSS (NM_024969)	8	NM_024969	80034	Hs.470479	NM_024969	ENSG00000178662	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding
5.46682-5	chr3	192413954	192414453	+	0	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	31185	NM_004113	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
1.57391-8	chr15	39050255	39050754	+	0	NA	Intergenic	Intergenic	61705	NM_207444	400359	Hs.448785	NM_207444	ENSG00000175779	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
1.19186-18	chr2	105986174	105986673	+	0	NA	intron (NM_001318897, intron 2 of 4)	intron (NM_001318897, intron 2 of 4)	29152	NM_001039492	2274	Hs.443687	NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
0.716041-9	chr3	183353120	183353619	+	0	NA	promoter-TSS (NM_017644)	promoter-TSS (NM_017644)	-42	NM_017644	54800	Hs.407709	NM_017644	ENSG00000114796	KLHL24	DRE1|KRIP6	kelch like family member 24	protein-coding
0.48177-30	chr18	55583044	55583543	+	0	NA	Intergenic	Intergenic	-112966	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
0.070049-6	chr17	1933248	1933747	+	0	NA	promoter-TSS (NM_001346574)	promoter-TSS (NM_001346574)	91	NM_001346575	1801	Hs.513856	NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
0.101054-10	chr9	71650512	71651011	+	0	NA	exon (NM_000144, exon 1 of 5)	exon (NM_000144, exon 1 of 5)	282	NM_001161706	2395	Hs.20685	NM_000144	ENSG00000165060	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
0.861861-6	chr2	128568552	128569051	+	0	NA	promoter-TSS (NM_018383)	promoter-TSS (NM_018383)	-40	NM_018383	55339	Hs.554831	NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
8.76148-9	chr7	73279697	73280196	+	0	NA	exon (NM_182504, exon 3 of 3)	exon (NM_182504, exon 3 of 3)	4457	NM_182504	135886	Hs.647026	NM_182504	ENSG00000175877	WBSCR28	-	Williams-Beuren syndrome chromosome region 28	protein-coding
1.35489-27	chr7	131240620	131241119	+	0	NA	intron (NM_001018111, intron 1 of 8)	CpG	507	NM_001018111	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
1.10698-13	chr5	35003467	35003966	+	0	NA	intron (NM_001306173, intron 11 of 12)	intron (NM_001306173, intron 11 of 12)	44524	NM_001306173	64902	Hs.34494	NM_031900	ENSG00000113492	AGXT2	AGT2|DAIBAT	alanine--glyoxylate aminotransferase 2	protein-coding
2.8735-3	chr18	60649796	60650295	+	0	NA	Intergenic	Intergenic	267373	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
1.16907-4	chr1	201278532	201279031	+	0	NA	intron (NM_001005337, intron 2 of 13)	intron (NM_001005337, intron 2 of 13)	26201	NM_000299	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1	protein-coding
1.26098-13	chr15	40531247	40531746	+	0	NA	promoter-TSS (NM_020168)	promoter-TSS (NM_020168)	204	NM_001276718	56924	Hs.732375	NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
0.0261362-19	chr16	89990879	89991378	+	0	NA	intron (NM_006086, intron 1 of 3)	intron (NM_006086, intron 1 of 3)	1441	NM_006086	10381	Hs.511743	NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
2.93282	chr15	85143436	85143935	+	0	NA	promoter-TSS (NM_017894)	promoter-TSS (NM_017894)	-564	NM_017894	54993	Hs.594023	NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
0.070049-15	chr2	70359305	70359804	+	0	NA	Intergenic	Intergenic	-7106	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
20.2457	chr3	189712840	189713339	+	0	NA	exon (NM_018192, exon 2 of 15)	exon (NM_018192, exon 2 of 15)	-125664	NR_126419	101929152		NR_126419	ENSG00000225764	P3H2-AS1	LEPREL1-AS1	P3H2 antisense RNA 1	ncRNA
0.91515-18	chr1	156352676	156353175	+	0	NA	intron (NR_046115, intron 9 of 10)	intron (NR_046115, intron 9 of 10)	13945	NM_020407	57127	Hs.131835	NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein (gene/pseudogene)	protein-coding
0.400052-31	chr20	44273641	44274140	+	0	NA	Intergenic	SVA_D|Other|Other	-13983	NM_147198	259240	Hs.249828	NM_147198	ENSG00000180205	WFDC9	WAP9|dJ688G8.2	WAP four-disulfide core domain 9	protein-coding
14.8945-2	chr6	52362431	52362930	+	0	NA	3' UTR (NM_012288, exon 11 of 11)	3' UTR (NM_012288, exon 11 of 11)	76875	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
27.5449	chr3	143049939	143050438	+	0	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	-10900	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
0.0833099-14	chr18	14178695	14179194	+	0	NA	promoter-TSS (NR_040113)	promoter-TSS (NR_040113)	-152	NR_040113	440482	Hs.632352	NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
2.34331	chr2	62932685	62933184	+	0	NA	promoter-TSS (NM_015252)	promoter-TSS (NM_015252)	-67	NM_015252	23301	Hs.271667	NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
28.8941	chr5	22651410	22651909	+	0	NA	intron (NM_004061, intron 1 of 14)	THE1D|LTR|ERVL-MaLR	202072	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
4.08935-4	chr4	103748166	103748665	+	0	NA	promoter-TSS (NR_131186)	promoter-TSS (NR_131186)	-75	NM_181892	7323	Hs.518773	NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
17.5203-2	chr2	193833709	193834208	+	0	NA	Intergenic	Intergenic	219387	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
6.43974-9	chr11	12208240	12208739	+	0	NA	intron (NR_144420, intron 3 of 27)	intron (NR_144420, intron 3 of 27)	23259	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
2.70026-4	chr12	76477583	76478082	+	0	NA	intron (NM_001330231, intron 1 of 15)	CpG	981	NM_001307924	4673	Hs.524599	NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
0.438316-16	chr14	24505781	24506280	+	0	NA	intron (NR_102691, intron 1 of 3)	intron (NR_102691, intron 1 of 3)	409	NR_102694	728635	Hs.647569	NM_001082488		DHRS4L1	SDR25C4	dehydrogenase/reductase 4 like 1	protein-coding
3.8405-23	chr9	93331353	93331852	+	0	NA	intron (NR_034157, intron 1 of 5)	intron (NR_034157, intron 1 of 5)	13426	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
0.609802-17	chr6	82811059	82811558	+	0	NA	Intergenic	L1PA2|LINE|L1	146163	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
3.41989-8	chr1	52831650	52832149	+	0	NA	promoter-TSS (NM_001330585)	promoter-TSS (NM_001330585)	-22	NM_001330585	200014	Hs.591451	NM_032449	ENSG00000154222	CC2D1B	-	coiled-coil and C2 domain containing 1B	protein-coding
2.05512-14	chr7	45039690	45040189	+	0	NA	exon (NM_001167934, exon 1 of 9)	exon (NM_001167934, exon 1 of 9)	152	NM_031443	83605	Hs.148272	NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffolding protein	protein-coding
2.89037-3	chr16	58400075	58400574	+	0	NA	Intergenic	Intergenic	-25974	NM_001126129	64785	Hs.47125	NM_022770	ENSG00000181938	GINS3	PSF3	GINS complex subunit 3	protein-coding
1.00179-6	chr5	156461612	156462111	+	0	NA	intron (NM_001173393, intron 7 of 8)	LTR5B|LTR|ERVK	23391	NM_012206	26762	Hs.129711	NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
0.428718-42	chr9	111775708	111776207	+	0	NA	promoter-TSS (NM_001286974)	promoter-TSS (NM_001286974)	-83	NM_003798	8727	Hs.58488	NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
3.17855-13	chr11	1595728	1596227	+	0	NA	intron (NR_021489, intron 1 of 1)	CpG	2006	NR_021489	338651	Hs.633229	NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
1.24939-9	chr9	127151763	127152262	+	0	NA	intron (NM_002799, intron 5 of 7)	intron (NM_002799, intron 5 of 7)	25740	NM_002799	5695	Hs.213470	NM_002799	ENSG00000136930	PSMB7	Z	proteasome subunit beta 7	protein-coding
0.310503-24	chr2	31456994	31457493	+	0	NA	promoter-TSS (NM_001321270)	promoter-TSS (NM_001321270)	363	NM_014600	30845	Hs.368808	NM_014600	ENSG00000013016	EHD3	PAST3	EH domain containing 3	protein-coding
3.17855-4	chr4	78078105	78078604	+	0	NA	promoter-TSS (NM_004354)	promoter-TSS (NM_004354)	-3	NM_004354	901	Hs.740456	NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
2.47952-5	chr2	103235848	103236607	+	0	NA	5' UTR (NM_003048, exon 1 of 12)	5' UTR (NM_003048, exon 1 of 12)	234	NM_003048	6549	Hs.250083	NM_003048	ENSG00000115616	SLC9A2	NHE2	solute carrier family 9 member A2	protein-coding
2.54925-21	chr16	11110589	11111088	+	0	NA	intron (NM_015226, intron 10 of 22)	intron (NM_015226, intron 10 of 22)	72493	NM_001243403	23274	Hs.35490	NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16 member A	protein-coding
14.045-3	chr6	44095561	44096060	+	0	NA	promoter-TSS (NM_032111)	promoter-TSS (NM_032111)	519	NM_018426	55362	Hs.414473	NM_018426	ENSG00000137216	TMEM63B	C6orf110	transmembrane protein 63B	protein-coding
30.7109	chr6	150589001	150589500	+	0	NA	Intergenic	Intergenic	-100778	NM_001164695	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
0.0130484-41	chr16	31879851	31880350	+	0	NA	Intergenic	Intergenic	-4979	NM_003414	10308	Hs.460645	NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
0.231917-14	chrX	114885144	114885643	+	0	NA	TTS (NM_001172335)	TTS (NM_001172335)	57574	NM_001282338	5358	Hs.496622	NM_005032	ENSG00000102024	PLS3	BMND18|T-plastin	plastin 3	protein-coding
10.6651-2	chr1	155945274	155945773	+	0	NA	intron (NM_001162384, intron 1 of 21)	intron (NM_001162384, intron 1 of 21)	2443	NM_004723	9181	Hs.743352	NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
0.501223-8	chr2	143868367	143868866	+	0	NA	Intergenic	Intergenic	-18283	NM_018460	55843	Hs.171011	NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
9.70616-9	chr14	23286949	23287448	+	0	NA	intron (NM_001126106, intron 1 of 10)	intron (NM_001126106, intron 1 of 10)	1822	NM_001126106	9056	Hs.513147	NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
0.282604-20	chr13	110359674	110360173	+	0	NA	Intergenic	Intergenic	-20698	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
0.0966115-10	chr11	11752793	11753292	+	0	NA	Intergenic	Intergenic	51727	NR_107037	102465870		NR_107037	ENSG00000278529	MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
7.09965-2	chr10	43915843	43916342	+	0	NA	Intergenic	Intergenic	-11396	NM_001098204	3185	Hs.808	NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
0.315171-15	chr1	12003562	12004061	+	0	NA	intron (NM_000302, intron 1 of 18)	intron (NM_000302, intron 1 of 18)	9087	NM_000302	5351	Hs.75093	NM_000302	ENSG00000083444	PLOD1	EDS6|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
7.64472-10	chr14	100070964	100071463	+	0	NA	promoter-TSS (NM_001144995)	promoter-TSS (NM_001144995)	379	NM_001329411	84439	Hs.131714	NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
1.70053-4	chr12	113375950	113376449	+	0	NA	promoter-TSS (NM_006187)	promoter-TSS (NM_006187)	-39	NM_006187	4940	Hs.528634	NM_006187	ENSG00000111331	OAS3	p100|p100OAS	2'-5'-oligoadenylate synthetase 3	protein-coding
5.10042-8	chr5	180694339	180694838	+	0	NA	intron (NR_102762, intron 1 of 2)	LTR5_Hs|LTR|ERVK	6375	NR_102759	100507602	Hs.126768	NR_102759	ENSG00000248275	TRIM52-AS1	-	TRIM52 antisense RNA 1 (head to head)	ncRNA
9.0309-6	chr6	136832529	136833028	+	0	NA	intron (NM_001198616, intron 1 of 16)	intron (NM_001198616, intron 1 of 16)	14573	NM_001198609	9053	Hs.486548	NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
1.33122-19	chr20	61422697	61423196	+	0	NA	Intergenic	Intergenic	-4811	NR_136405	55257	Hs.443260	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
0.287242-5	chr20	10538340	10538839	+	0	NA	intron (NM_001009608, intron 3 of 7)	intron (NM_001009608, intron 3 of 7)	91754	NR_106930	102465525		NR_106930	ENSG00000273745	MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
0.491485-8	chr1	110655247	110655746	+	0	NA	exon (NM_203412, exon 1 of 1)	exon (NM_203412, exon 1 of 1)	434	NM_203412	164153	Hs.374027	NM_203412	ENSG00000186150	UBL4B	-	ubiquitin like 4B	protein-coding
6.32644-2	chr6	7137709	7138208	+	0	NA	intron (NM_001003700, intron 1 of 11)	intron (NM_001003700, intron 1 of 11)	29872	NM_001003698	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
3.9794-2	chr2	179279289	179279788	+	0	NA	intron (NR_110206, intron 1 of 2)	intron (NR_110206, intron 1 of 2)	1152	NR_110205	101927027	Hs.715694	NR_110204	ENSG00000223960	LOC101927027	-	uncharacterized LOC101927027	ncRNA
4.17937-11	chr17	7482522	7483021	+	0	NA	promoter-TSS (NM_001251)	promoter-TSS (NM_001251)	-34	NM_001251	968	Hs.647419	NM_001251	ENSG00000129226	CD68	GP110|LAMP4|SCARD1	CD68 molecule	protein-coding
2.79014-15	chr4	149363503	149364002	+	0	NA	promoter-TSS (NM_001166104)	promoter-TSS (NM_001166104)	-80	NM_001166104	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
0.996329-6	chr11	111789346	111789845	+	0	NA	promoter-TSS (NM_080659)	promoter-TSS (NM_080659)	-6	NM_080659	91894	Hs.97013	NM_080659	ENSG00000149300	C11orf52	-	chromosome 11 open reading frame 52	protein-coding
0.11441-7	chr6	692396	692895	+	0	NA	intron (NR_073064, intron 1 of 29)	CpG	496	NR_073064	55770	Hs.484412	NM_018303	ENSG00000112685	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
2.54145-13	chr3	137905887	137906386	+	0	NA	promoter-TSS (NM_014154)	promoter-TSS (NM_014154)	46	NM_001267041	25852	Hs.744868	NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
0.371573-17	chr11	59523209	59523708	+	0	NA	intron (NM_004177, intron 1 of 10)	intron (NM_004177, intron 1 of 10)	926	NM_001178040	6809	Hs.180711	NM_004177	ENSG00000166900	STX3	STX3A	syntaxin 3	protein-coding
6.9897-12	chr9	15307337	15307836	+	0	NA	promoter-TSS (NM_001168339)	promoter-TSS (NM_001168339)	-228	NM_152574	158219	Hs.563630	NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
1.09579-18	chr7	807057	807556	+	0	NA	intron (NM_017802, intron 8 of 12)	intron (NM_017802, intron 8 of 12)	-39993	NM_001164759	5575	Hs.520851	NM_002735	ENSG00000188191	PRKAR1B	PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
5.22879-22	chr12	53472454	53472953	+	0	NA	intron (NM_032840, intron 1 of 10)	intron (NM_032840, intron 1 of 10)	501	NM_032840	84926	Hs.343334	NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
0.15923-13	chr8	68934347	68934846	+	0	NA	intron (NM_025170, intron 4 of 23)	intron (NM_025170, intron 4 of 23)	70246	NM_025170	80243	Hs.169943	NM_024870	ENSG00000046889	PREX2	DEP.2|DEPDC2|P-REX2|PPP1R129	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2	protein-coding
12.993-2	chr13	62437122	62437621	+	0	NA	Intergenic	LTR14A|LTR|ERVK	166310	NR_046995	100874143	Hs.552684	NR_046995	ENSG00000229578	LINC00358	-	long intergenic non-protein coding RNA 358	ncRNA
1.73925-14	chr12	5131542	5132041	+	0	NA	Intergenic	Intergenic	-21294	NM_002234	3741	Hs.150208	NM_002234	ENSG00000130037	KCNA5	ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1	potassium voltage-gated channel subfamily A member 5	protein-coding
0.268721-31	chr6	111982603	111983267	+	0	NA	3' UTR (NM_153047, exon 11 of 11)	3' UTR (NM_153047, exon 11 of 11)	-55458	NM_001164281	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
1.81115-21	chr13	111258003	111258502	+	0	NA	Intergenic	SVA_D|Other|Other	-9555	NM_001242883	55739	Hs.408324	NM_018210	ENSG00000213995	NAXD	CARKD|LP3298	NAD(P)HX dehydratase	protein-coding
1.39662-26	chr15	80103622	80104121	+	0	NA	Intergenic	Intergenic	85468	NR_037654	10588	Hs.194294	NM_006441	ENSG00000136371	MTHFS	HsT19268	methenyltetrahydrofolate synthetase	protein-coding
5.59091	chr16	85239251	85239750	+	0	NA	Intergenic	L2c|LINE|L2	68744	NR_033984	400548	Hs.592054	NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
11.3253-2	chr2	4187255	4188221	+	0	NA	Intergenic	Intergenic	165987	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
2.23299-3	chr12	106070375	106070874	+	0	NA	Intergenic	Intergenic	-27357	NR_110109	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
5.96879-10	chr9	95055848	95056347	+	0	NA	promoter-TSS (NR_073446)	promoter-TSS (NR_073446)	-59	NM_002161	3376	Hs.445403	NM_002161	ENSG00000196305	IARS	GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785	isoleucyl-tRNA synthetase	protein-coding
25.5752	chr10	118163284	118163783	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-23891	NM_001011709	119548	Hs.276724	NM_001011709	ENSG00000203837	PNLIPRP3	-	pancreatic lipase related protein 3	protein-coding
0.362122-7	chr3	24563204	24563703	+	0	NA	promoter-TSS (NR_039955)	promoter-TSS (NR_039955)	-527	NR_039955	100616448		NR_039955	ENSG00000265028	MIR4792	miR-4792	microRNA 4792	ncRNA
10.4769-2	chr1	26122998	26123497	+	0	NA	Intergenic	Intergenic	-3420	NM_020451	57190	Hs.323396	NM_020451	ENSG00000162430	SELENON	CFTD|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
0.15923-22	chr2	20099630	20100129	+	0	NA	intron (NM_001008237, intron 1 of 2)	intron (NM_001008237, intron 1 of 2)	1868	NM_001008237	130502	Hs.591547	NM_001008237	ENSG00000183891	TTC32	-	tetratricopeptide repeat domain 32	protein-coding
1.9044-6	chr22	41418436	41418935	+	0	NA	Intergenic	CpG	51040	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
0.315171-21	chr4	129308076	129308575	+	0	NA	Intergenic	Intergenic	-40846	NR_125882	100507487	Hs.549644	NR_125882	ENSG00000251432	LOC100507487	-	uncharacterized LOC100507487	ncRNA
1.98596-13	chr3	5163682	5164181	+	0	NA	promoter-TSS (NM_018184)	promoter-TSS (NM_018184)	1	NM_018184	55207	Hs.250009	NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
1.75874	chr21	46494047	46494546	+	0	NA	promoter-TSS (NM_001112)	promoter-TSS (NM_001112)	-197	NM_001112	104	Hs.474018	NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA specific B1	protein-coding
4.34152-7	chr11	116018531	116019030	+	0	NA	Intergenic	LTR1|LTR|ERV1	-387862	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
3.5164-4	chr10	29061127	29061626	+	0	NA	intron (NR_120652, intron 2 of 3)	SVA_B|Other|Other	23603	NR_038375	100507605	Hs.119207	NR_038374	ENSG00000235824	LINC00837	-	long intergenic non-protein coding RNA 837	ncRNA
0.8302-19	chr5	118324052	118324551	+	0	NA	promoter-TSS (NM_001308081)	promoter-TSS (NM_001308081)	-1	NM_173666	285605	Hs.655891	NM_173666	ENSG00000169570	DTWD2	-	DTW domain containing 2	protein-coding
2.55707-8	chr9	99619099	99619598	+	0	NA	Intergenic	Intergenic	-2578	NM_001346995	158431	Hs.30567	NM_001001662	ENSG00000196597	ZNF782	-	zinc finger protein 782	protein-coding
2.83997-3	chr11	115616225	115616724	+	0	NA	Intergenic	Intergenic	-10994	NR_135066	101928985	Hs.398155	NR_135066		LOC101928985	-	uncharacterized LOC101928985	ncRNA
1.81115-23	chr11	70795217	70795716	+	0	NA	intron (NM_012309, intron 7 of 22)	intron (NM_012309, intron 7 of 22)	-76993	NR_037437	100500844		NR_037437	ENSG00000263744	MIR3664	mir-3664	microRNA 3664	ncRNA
4.19075-13	chr2	191442933	191443432	+	0	NA	Intergenic	Intergenic	-43714	NM_001142645	100131211	Hs.659824	NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
10.2365	chr22	47197177	47197676	+	0	NA	intron (NR_104292, intron 5 of 13)	intron (NR_104292, intron 5 of 13)	27602	NM_001284305	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
5.83359-16	chr11	129827547	129828046	+	0	NA	exon (NM_199437, exon 3 of 21)	exon (NM_199437, exon 3 of 21)	-10279	NM_199439	56980	Hs.275086	NM_020228	ENSG00000170325	PRDM10	PFM7	PR/SET domain 10	protein-coding
1.2436-14	chr14	65226815	65227314	+	0	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	25340	NR_107009	102465841		NR_107009	ENSG00000070182	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
0.931265-7	chr11	35030783	35031282	+	0	NA	Intergenic	Intergenic	67648	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
3.27902-7	chr9	97899924	97900423	+	0	NA	intron (NM_001243743, intron 7 of 14)	intron (NM_001243743, intron 7 of 14)	-51797	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
1.30768-6	chr8	85560383	85560882	+	0	NA	intron (NM_001100391, intron 2 of 8)	intron (NM_001100391, intron 2 of 8)	-57530	NM_001287244	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
21.4388	chr12	54332100	54332599	+	0	NA	promoter-TSS (NM_017410)	promoter-TSS (NM_017410)	-227	NM_017410	3229	Hs.118608	NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
0.496351-25	chr22	19973842	19974341	+	0	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	22815	NR_039918	100616414		NR_039918	ENSG00000093010	MIR4761	-	microRNA 4761	ncRNA
2.21849-2	chr2	110745170	110745669	+	0	NA	non-coding (NR_046110, exon 2 of 4)	non-coding (NR_046110, exon 2 of 4)	862	NR_046111	440894	Hs.516403	NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
3.01899-15	chr18	57348639	57349138	+	0	NA	intron (NM_133459, intron 2 of 10)	intron (NM_133459, intron 2 of 10)	15756	NM_133459	147372	Hs.34333	NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding
0.467237-6	chr12	57846591	57847090	+	0	NA	TTS (NM_005538)	TTS (NM_005538)	-2234	NM_031479	83729	Hs.632713	NM_031479	ENSG00000139269	INHBE	-	inhibin beta E subunit	protein-coding
0.486625-5	chr19	50706518	50707017	+	0	NA	promoter-TSS (NM_001145809)	promoter-TSS (NM_001145809)	-118	NM_024729	79784	Hs.467142	NM_024729	ENSG00000105357	MYH14	DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	myosin heavy chain 14	protein-coding
1.01824-2	chr1	55181380	55181879	+	0	NA	exon (NM_001291333, exon 1 of 8)	exon (NM_001291333, exon 1 of 8)	134	NM_001291333	7268	Hs.412482	NM_004623	ENSG00000243725	TTC4	-	tetratricopeptide repeat domain 4	protein-coding
1.87087-10	chr17	72772203	72772702	+	0	NA	promoter-TSS (NM_017728)	promoter-TSS (NM_017728)	112	NM_001305079	26151	Hs.144058	NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
5.22879-8	chr3	37588346	37588845	+	0	NA	intron (NM_002207, intron 15 of 27)	intron (NM_002207, intron 15 of 27)	94782	NM_002207	3680	Hs.113157	NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
1.74574-6	chr17	7146237	7146736	+	0	NA	promoter-TSS (NM_007278)	promoter-TSS (NM_007278)	-733	NM_007278	11337	Hs.647421	NM_007278	ENSG00000170296	GABARAP	ATG8A|GABARAP-a|MM46	GABA type A receptor-associated protein	protein-coding
27.167-3	chr9	17609415	17609914	+	0	NA	intron (NM_003026, intron 1 of 8)	intron (NM_003026, intron 1 of 8)	30712	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
3.55561-2	chr1	38618283	38618782	+	0	NA	Intergenic	Intergenic	61907	NR_038928	339442	Hs.434245	NR_038928	ENSG00000237290	LINC01343	-	long intergenic non-protein coding RNA 1343	ncRNA
0.433514-8	chr8	72438653	72439152	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-164435	NM_001288575	2138	Hs.444971	NM_000503	ENSG00000104313	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
6.32644-15	chr6	5030793	5031292	+	0	NA	intron (NR_126018, intron 1 of 1)	intron (NR_126018, intron 1 of 1)	836	NR_126019	100129461	Hs.131700	NR_126015	ENSG00000272142	LYRM4-AS1	-	LYRM4 antisense RNA 1	ncRNA
0.496351-38	chr7	129711910	129712409	+	0	NA	intron (NM_014997, intron 1 of 9)	intron (NM_014997, intron 1 of 9)	1810	NM_014997	23008	Hs.520710	NM_014997	ENSG00000128607	KLHDC10	slim	kelch domain containing 10	protein-coding
0.404816-6	chr1	92941572	92942071	+	0	NA	intron (NM_001127215, intron 6 of 6)	intron (NM_001127215, intron 6 of 6)	7535	NM_001127215	2672	Hs.73172	NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
16.3639	chr18	33957563	33958062	+	0	NA	intron (NM_025135, intron 3 of 24)	intron (NM_025135, intron 3 of 24)	80153	NM_025135	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
0.589858-9	chr10	49671513	49672012	+	0	NA	intron (NM_001347735, intron 3 of 8)	intron (NM_001347735, intron 3 of 8)	29930	NM_001256026	58504	Hs.655672	NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
0.0217692-10	chr14	33587811	33588310	+	0	NA	intron (NM_001164749, intron 2 of 11)	intron (NM_001164749, intron 2 of 11)	179601	NM_022123	64067	Hs.657892	NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
0.376307-40	chr1	156830376	156830875	+	0	NA	promoter-TSS (NM_002529)	promoter-TSS (NM_002529)	-46	NM_001012331	4914	Hs.406293	NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
0.127808-2	chr7	38092250	38092749	+	0	NA	Intergenic	Intergenic	-125309	NM_032016	83930	Hs.309753	NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
2.54925-22	chr14	96645167	96645666	+	0	NA	Intergenic	Intergenic	-25719	NM_000623	624	Hs.654542	NM_000623	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
12.1183-3	chr13	108321617	108322116	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-138270	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
3.22393-5	chr18	57567556	57568055	+	0	NA	intron (NM_021127, intron 1 of 1)	intron (NM_021127, intron 1 of 1)	613	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
24.5469-4	chr3	193782703	193783202	+	0	NA	intron (NR_136181, intron 1 of 3)	MER94B|DNA|hAT-Blackjack	4366	NR_136181	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
1.03474	chr13	87983317	87983816	+	0	NA	Intergenic	Intergenic	287429	NR_039722	100616182		NR_039722	ENSG00000266052	MIR4500	-	microRNA 4500	ncRNA
7.16699-23	chr15	75339327	75339826	+	0	NA	intron (NM_001301105, intron 3 of 4)	intron (NM_001301105, intron 3 of 4)	3966	NM_001301104	60490	Hs.458922	NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
2.05512-7	chr6	33790237	33790736	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-18693	NM_001184698	4295	Hs.2813	NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
1.2436-23	chr7	43798373	43798872	+	0	NA	intron (NM_000712, intron 1 of 7)	CpG	350	NM_000712	644	Hs.488143	NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA	biliverdin reductase A	protein-coding
0.8302-17	chr20	18037031	18037530	+	0	NA	intron (NM_001303462, intron 1 of 2)	CpG	1246	NM_021220	58495	Hs.661013	NM_021220	ENSG00000125850	OVOL2	EUROIMAGE566589|PPCD1|ZNF339	ovo like zinc finger 2	protein-coding
3.22393-23	chr8	134582381	134582880	+	0	NA	intron (NM_173344, intron 1 of 9)	CpG	1553	NM_173344	6482	Hs.374257	NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
2.61219-29	chr1	43968138	43968637	+	0	NA	Intergenic	SVA_D|Other|Other	-23321	NM_001329137	5792	Hs.272062	NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase, receptor type F	protein-coding
9.87163-23	chr14	89574812	89575311	+	0	NA	Intergenic	LTR33|LTR|ERVL	284564	NM_144596	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
0.931265-5	chr1	153195458	153195957	+	0	NA	Intergenic	Intergenic	5647	NM_001195571	574414	Hs.135098	NM_001195571	ENSG00000203783	PRR9	-	proline rich 9	protein-coding
0.550241-18	chr21	44285888	44286387	+	0	NA	intron (NM_001260476, intron 3 of 10)	intron (NM_001260476, intron 3 of 10)	13248	NM_001260477	10785	Hs.248815	NM_018669	ENSG00000160193	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
2.62013-17	chr4_gl000193_random	91680	92179	+	0	NA	Intergenic	SST1|Satellite|centr	-3554	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
0.419142-37	chr3	196149796	196150295	+	0	NA	intron (NM_015562, intron 1 of 10)	intron (NM_015562, intron 1 of 10)	-8211	NR_046745	100874034	Hs.617990	NR_046745		UBXN7-AS1	-	UBXN7 antisense RNA 1	ncRNA
17.2354-4	chr5	58879567	58880066	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	2508	NM_006203	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
17.986-5	chr3	127469116	127469615	+	0	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	72360	NM_007283	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
12.8904-3	chr16	56321840	56322339	+	0	NA	intron (NM_020988, intron 3 of 8)	L2b|LINE|L2	42657	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
0.385789-27	chr19	16695011	16695510	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-12067	NM_024881	79939	Hs.620596	NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
8.72895-4	chr7	64342729	64343228	+	0	NA	Intergenic	SST1|Satellite|centr	-20642	NR_003099	10793	Hs.520889	NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
1.89096-10	chr17	47227811	47228310	+	0	NA	intron (NM_153446, intron 3 of 10)	SVA_D|Other|Other	17731	NM_153446	124872	Hs.374679	NM_153446	ENSG00000167080	B4GALNT2	B4GALT|GALGT2	beta-1,4-N-acetyl-galactosaminyltransferase 2	protein-coding
2.48721-20	chr7	105688124	105688623	+	0	NA	Intergenic	MIR|SINE|MIR	64418	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
2.80669	chr17	55812972	55813471	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	9469	NM_001282544	101927581	Hs.540784	NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
1.79799-22	chr10	105127407	105127906	+	0	NA	promoter-TSS (NM_139052)	promoter-TSS (NM_139052)	-54	NM_139052	6877	Hs.96103	NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
7.87812-3	chr4	79254065	79254564	+	0	NA	intron (NM_001166133, intron 18 of 41)	intron (NM_001166133, intron 18 of 41)	-218428	NM_005139	306	Hs.480042	NM_005139	ENSG00000138772	ANXA3	ANX3	annexin A3	protein-coding
15.0724-6	chr3	109884375	109884874	+	0	NA	Intergenic	MER4A1|LTR|ERV1	562949	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
11.0018-5	chr5	31762566	31763065	+	0	NA	intron (NM_178140, intron 1 of 24)	intron (NM_178140, intron 1 of 24)	123298	NM_178140	23037	Hs.481819	NM_015022	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
14.3297	chr4	102572906	102573405	+	0	NA	Intergenic	Intergenic	-138609	NM_001127507	55024	Hs.480400	NM_017935	ENSG00000153064	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding
11.1634	chr11	44283247	44283746	+	0	NA	3' UTR (NM_021926, exon 4 of 4)	3' UTR (NM_021926, exon 4 of 4)	48220	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
0.2365-25	chr6	41499793	41500292	+	0	NA	intron (NR_126415, intron 1 of 1)	intron (NR_126415, intron 1 of 1)	13939	NR_126417	101060264	Hs.571099	NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
0.172766-23	chr15	84228041	84228540	+	0	NA	intron (NR_136711, intron 3 of 10)	intron (NR_136711, intron 3 of 10)	68924	NM_001324187	6457	Hs.270055	NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
3.99027-24	chr2	7349157	7349656	+	0	NA	Intergenic	Intergenic	-131395	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
9.24453	chr2	145169049	145169548	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-79197	NM_001284234	79712	Hs.44780	NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
1.42065-16	chr14	23298845	23299344	+	0	NA	promoter-TSS (NM_001318870)	promoter-TSS (NM_001318870)	2	NM_181307	122704	Hs.355935	NM_178336	ENSG00000172590	MRPL52	-	mitochondrial ribosomal protein L52	protein-coding
1.61151-6	chr2	111334509	111335008	+	0	NA	promoter-TSS (NM_005054).2	promoter-TSS (NM_005054).2	-80	NM_005054	84220	Hs.469630	NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
2.58061-17	chr8	146051972	146052471	+	0	NA	promoter-TSS (NM_001282797)	promoter-TSS (NM_001282797)	-682	NM_003416	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
0.584886-10	chr1	149870851	149871350	+	0	NA	promoter-TSS (NM_016074)	promoter-TSS (NM_016074)	-35	NM_001321026	51027	Hs.13880	NM_016074	ENSG00000178096	BOLA1	CGI-143	bolA family member 1	protein-coding
0.835461-8	chr20	39267026	39267525	+	0	NA	Intergenic	Intergenic	50605	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	DURS3|KRML|MCTO	MAF bZIP transcription factor B	protein-coding
1.72631-8	chr8	30013927	30014426	+	0	NA	intron (NM_006571, intron 1 of 6)	CpG	363	NM_006571	10671	Hs.158427	NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
3.83-14	chr2	6913040	6913539	+	0	NA	Intergenic	Intergenic	-2847	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	ncRNA
0.888424-19	chr17	32906168	32906667	+	0	NA	promoter-TSS (NM_207454)	promoter-TSS (NM_207454)	-29	NM_207454	400591	Hs.514090	NM_207454		C17orf102	-	chromosome 17 open reading frame 102	protein-coding
17.6955-2	chr4	142002895	142003394	+	0	NA	intron (NM_020724, intron 1 of 6)	intron (NM_020724, intron 1 of 6)	51472	NM_020724	57484	Hs.659104	NM_020724	ENSG00000170153	RNF150	-	ring finger protein 150	protein-coding
15.0446-6	chr2	31619812	31620311	+	0	NA	intron (NM_000379, intron 6 of 35)	intron (NM_000379, intron 6 of 35)	17550	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
4.65974-15	chr4	170599562	170600061	+	0	NA	intron (NM_001243374, intron 1 of 11)	SVA_B|Other|Other	18598	NM_001243374	1182	Hs.481186	NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3	chloride voltage-gated channel 3	protein-coding
6.19789-4	chr14	88664665	88665164	+	0	NA	intron (NM_021161, intron 4 of 6)	intron (NM_021161, intron 4 of 6)	72341	NM_138318	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
1.11821	chr10	62704160	62704659	+	0	NA	promoter-TSS (NM_001242359)	promoter-TSS (NM_001242359)	-376	NM_014836	9886	Hs.737374	NM_014836	ENSG00000072422	RHOBTB1	-	Rho related BTB domain containing 1	protein-coding
3.41035-6	chr6	5261082	5261581	+	0	NA	promoter-TSS (NM_020408)	promoter-TSS (NM_020408)	80	NM_001318872	10667	Hs.484547	NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
10.4769-6	chr5	118659169	118659668	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-9452	NM_001286814	25816	Hs.618488	NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
0.190881-8	chr5	59095773	59096272	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-31584	NM_001197218	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
0.414361-19	chr5	167646569	167647068	+	0	NA	intron (NM_001080428, intron 19 of 24)	intron (NM_001080428, intron 19 of 24)	12559	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
10.2457	chr3	20588774	20589273	+	0	NA	Intergenic	SVA_B|Other|Other	205063	NR_110814	101927829	Hs.639381	NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
6.49752-4	chr7	26578222	26578721	+	0	NA	promoter-TSS (NR_022006)	promoter-TSS (NR_022006)	-27	NR_022006	9808	Hs.69749	NM_014769	ENSG00000122548	KIAA0087	-	KIAA0087 lncRNA	ncRNA
6.55608-5	chr5	153619449	153619948	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	49403	NM_198321	55568	Hs.631797	NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
1.00727-20	chr7	97464733	97465232	+	0	NA	Intergenic	Intergenic	36495	NM_133436	440	Hs.489207	NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
1.89767-14	chr15	75135421	75135920	+	0	NA	promoter-TSS (NR_104309)	promoter-TSS (NR_104309)	-118	NR_104309	25989	Hs.513034	NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
0-5	chr2	54746178	54746677	+	0	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-9932	NR_002229	56969	Hs.657366	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
1.86419	chr7	128049775	128050274	+	0	NA	promoter-TSS (NM_000883)	promoter-TSS (NM_000883)	12	NM_001142576	3614	Hs.654401	NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
6.36388-11	chr9	129436576	129437075	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	60103	NM_002316	4010	Hs.129133	NM_002316	ENSG00000136944	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
0.496351-47	chr9	117880197	117880696	+	0	NA	promoter-TSS (NM_002160)	promoter-TSS (NM_002160)	90	NM_002160	3371	Hs.143250	NM_002160	ENSG00000041982	TNC	150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C	tenascin C	protein-coding
1.94499-14	chr9	120507217	120507716	+	0	NA	Intergenic	CpG	41013	NM_138557	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
1.28427-16	chr16	3014514	3015013	+	0	NA	intron (NM_172229, intron 1 of 8)	CpG	546	NM_001253725	79412	Hs.661128	NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
1.46302-4	chr11	114848078	114848577	+	0	NA	Intergenic	Intergenic	299127	NM_182495	120406	Hs.446760	NM_182495	ENSG00000204361	NXPE2	FAM55B	neurexophilin and PC-esterase domain family member 2	protein-coding
23.5853-5	chr6	90219445	90219944	+	0	NA	intron (NM_014942, intron 1 of 15)	MLT1I|LTR|ERVL-MaLR	-52343	NM_001242811	22881	Hs.702213	NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
1.87087-3	chr17	34842156	34842655	+	0	NA	promoter-TSS (NM_001281434)	promoter-TSS (NM_001281434)	-66	NM_001281433	9326	Hs.2210	NM_004773	ENSG00000273611	ZNHIT3	TRIP3	zinc finger HIT-type containing 3	protein-coding
0.177288-6	chr7	90224621	90225120	+	0	NA	promoter-TSS (NM_001287135)	promoter-TSS (NM_001287135)	-806	NM_001287135	5218	Hs.258576	NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding
0.338583-24	chr2	46149558	46150057	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	270764	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
1.17475-31	chrUn_gl000214	109098	109597	+	0	NA	NA	Intergenic	NA	NA								
0.168249-4	chr2	12858360	12858859	+	0	NA	exon (NM_021643, exon 1 of 3)	exon (NM_021643, exon 1 of 3)	1611	NR_027303	28951	Hs.467751	NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
4.98941	chr11	103824856	103825355	+	0	NA	intron (NM_025208, intron 3 of 6)	intron (NM_025208, intron 3 of 6)	-82203	NM_001001711	414301	Hs.591941	NM_001001711	ENSG00000170967	DDI1	-	DNA damage inducible 1 homolog 1	protein-coding
21.0237-3	chr20	22480247	22480746	+	0	NA	Intergenic	Intergenic	78784	NR_001558	140828	Hs.9842	NR_001558	ENSG00000259974	LINC00261	ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17	long intergenic non-protein coding RNA 261	ncRNA
1.02373-7	chr7	92076909	92077408	+	0	NA	exon (NM_021167, exon 1 of 5)	exon (NM_021167, exon 1 of 5)	396	NR_052016	57798	Hs.21145	NM_021167	ENSG00000157259	GATAD1	CMD2B|ODAG|RG083M05.2	GATA zinc finger domain containing 1	protein-coding
6.73664-10	chr5	172571724	172572223	+	0	NA	intron (NM_013980, intron 1 of 5)	intron (NM_013980, intron 1 of 5)	528	NM_013979	662	Hs.145726	NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2 interacting protein 1	protein-coding
12.1824-3	chr17	80673981	80674480	+	0	NA	promoter-TSS (NR_046408)	promoter-TSS (NR_046408)	-101	NR_136400	101929552	Hs.375081	NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
6.73664-12	chr2	85146874	85147373	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	14360	NM_021103	9168	Hs.446574	NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
2.36572-4	chr1	171454804	171455303	+	0	NA	intron (NM_015172, intron 1 of 33)	CpG	387	NM_015172	23215	Hs.494614	NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
0.0261362-41	chr5	40503544	40504043	+	0	NA	Intergenic	Intergenic	-176239	NM_000958	5734	Hs.199248	NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
11.549-2	chr14	104890800	104891299	+	0	NA	Intergenic	Intergenic	-154972	NM_001286399	400258	Hs.153827	NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
1.75874-19	chr17	48128193	48128692	+	0	NA	non-coding (NR_038230, exon 3 of 3)	non-coding (NR_038230, exon 3 of 3)	4661	NR_038230	284080	Hs.274864	NR_038230	ENSG00000246640	LOC284080	-	uncharacterized LOC284080	ncRNA
1.37869-35	chr8	26240255	26240754	+	0	NA	promoter-TSS (NM_004331)	promoter-TSS (NM_004331)	-19	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2 interacting protein 3 like	protein-coding
0.0261362-32	chr12	96336477	96336976	+	0	NA	promoter-TSS (NM_182496)	promoter-TSS (NM_182496)	-298	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
3.72634-4	chrX	110425136	110425635	+	0	NA	intron (NM_001128172, intron 8 of 14)	MamSINE1|SINE|tRNA	59080	NM_001128172	5063	Hs.593599	NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
1.07905-9	chr13	25268154	25268653	+	0	NA	intron (NM_001676, intron 10 of 22)	intron (NM_001676, intron 10 of 22)	13854	NM_001676	479	Hs.147111	NM_001676	ENSG00000075673	ATP12A	#945|ATP1AL1|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
2.61219-8	chr7	4175964	4176463	+	0	NA	intron (NM_152744, intron 28 of 44)	intron (NM_152744, intron 28 of 44)	6896	NM_001079653	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
1.43271-27	chr1	181906069	181906568	+	0	NA	Intergenic	Intergenic	124529	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
0.974532-2	chr9	35603422	35603921	+	0	NA	Intergenic	Intergenic	-1610	NM_006285	7016	Hs.708096	NM_006285	ENSG00000107140	TESK1	-	testis-specific kinase 1	protein-coding
0.241089-19	chr3	124773351	124773850	+	0	NA	intron (NM_020733, intron 1 of 16)	MIRc|SINE|MIR	1202	NM_020733	57493	Hs.477420	NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
3.8405-11	chr8	127644121	127644620	+	0	NA	Intergenic	Intergenic	-73659	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding
7.72113-3	chr8	103094785	103095284	+	0	NA	intron (NM_001040624, intron 1 of 7)	intron (NM_001040624, intron 1 of 7)	41528	NM_001040624	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
8.99629-3	chr4	113269610	113270109	+	0	NA	intron (NM_001253884, intron 2 of 14)	intron (NM_001253884, intron 2 of 14)	51360	NM_025144	80216	Hs.652825	NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK	alpha kinase 1	protein-coding
6.34512-17	chr4	15656166	15656665	+	0	NA	intron (NR_036464, intron 1 of 11)	CpG	620	NM_012161	26234	Hs.643433	NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
14.1794-2	chr11	66335808	66336307	+	0	NA	promoter-TSS (NM_003793)	promoter-TSS (NM_003793)	-10	NM_003793	8722	Hs.11590	NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
0.629839-11	chr1	95774362	95774861	+	0	NA	Intergenic	Intergenic	9208	NR_135588	100996630	Hs.662270	NR_135588	ENSG00000228504	LINC01760	-	long intergenic non-protein coding RNA 1760	ncRNA
29.3181	chr17	78419443	78419942	+	0	NA	Intergenic	Intergenic	26474	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
1.19186-27	chr13	100583629	100584128	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	25541	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA
0.0612309-25	chr15	56332658	56333157	+	0	NA	Intergenic	Intergenic	-46963	NM_006154	4734	Hs.1565	NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
3.52617-8	chr9	138610390	138610889	+	0	NA	intron (NM_020822, intron 2 of 30)	intron (NM_020822, intron 2 of 30)	16608	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
3.39135-6	chr2	91757774	91758273	+	0	NA	Intergenic	Intergenic	89952	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
0.79355-26	chr11	82012444	82012943	+	0	NA	intron (NR_120571, intron 3 of 7)	MLT1A0|LTR|ERVL-MaLR	102262	NR_120571	101928989	Hs.145117	NR_120571	ENSG00000245832	MIR4300HG	-	MIR4300 host gene	ncRNA
1.02373-11	chr8	29661717	29662573	+	0	NA	Intergenic	Intergenic	23875	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
0.76756-8	chr3	129054943	129055442	+	0	NA	Intergenic	Intergenic	-20072	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1.10|H1X	H1 histone family member X	protein-coding
5.49751	chr6	33955300	33955799	+	0	NA	Intergenic	MIR|SINE|MIR	12279	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA
4.34152-5	chr9	93069399	93069898	+	0	NA	intron (NR_109795, intron 2 of 2)	intron (NR_109795, intron 2 of 2)	126123	NR_109795	101927873	Hs.598482	NR_109795	ENSG00000231107	LINC01508	-	long intergenic non-protein coding RNA 1508	ncRNA
0.920515-30	chr6	44214235	44214734	+	0	NA	promoter-TSS (NM_007355)	promoter-TSS (NM_007355)	-211	NM_001271971	3326	Hs.509736	NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
0.145735	chr22	17746889	17747388	+	0	NA	intron (NR_038398, intron 1 of 2)	intron (NR_038398, intron 1 of 2)	485	NR_038398	27442	Hs.517394	NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3 (non-protein coding)	ncRNA
0.491485-16	chr1	88527111	88527610	+	0	NA	Intergenic	Intergenic	-622467	NM_001320708	5586	Hs.440833	NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
18.0967-2	chr12	119212063	119212562	+	0	NA	Intergenic	CpG	-12828	NR_134998	105370014	Hs.550870	NR_134998	ENSG00000256750	LOC105370014	-	uncharacterized LOC105370014	ncRNA
2.27678-10	chr7	37326739	37327238	+	0	NA	intron (NM_001206482, intron 4 of 21)	MER58A|DNA|hAT-Charlie	66284	NM_001206482	9844	Hs.434989	NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
0.254883-47	chr9	139780555	139781054	+	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	-161	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
0.213631-20	chr20	15456068	15456567	+	0	NA	intron (NM_080676, intron 7 of 16)	intron (NM_080676, intron 7 of 16)	278813	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
5.59091-11	chrX	133973912	133974411	+	0	NA	intron (NM_138819, intron 3 of 6)	SVA_D|Other|Other	32938	NM_001170781	159091	Hs.269127	NM_138819	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
1.31944-4	chr20	11524651	11525150	+	0	NA	Intergenic	Intergenic	-270869	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
0.376307-42	chr10	134036536	134037035	+	0	NA	intron (NM_001318879, intron 8 of 11)	intron (NM_001318879, intron 8 of 11)	25827	NR_134911	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
28.0688-2	chr11	45011518	45012017	+	0	NA	Intergenic	MIR|SINE|MIR	16314	NR_026681	221122	Hs.551656	NR_026681	ENSG00000254654	LOC221122	-	uncharacterized LOC221122	ncRNA
11.8177-3	chr7	37798127	37798626	+	0	NA	Intergenic	Intergenic	74998	NM_001329993	353345	Hs.563492	NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
1.53663-21	chr2	218171535	218172034	+	0	NA	intron (NR_133642, intron 4 of 5)	intron (NR_133642, intron 4 of 5)	24328	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
30.0349-6	chr3	193621697	193622196	+	0	NA	Intergenic	Intergenic	90081	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
0.925886-10	chr12	66524272	66524771	+	0	NA	promoter-TSS (NM_032338)	promoter-TSS (NM_032338)	-10	NR_125724	103625681	Hs.504820	NR_125724	ENSG00000239335	LLPH-AS1	-	LLPH antisense RNA 1 (head to head)	ncRNA
25.1428	chr5	99723811	99724310	+	0	NA	promoter-TSS (NR_027503)	promoter-TSS (NR_027503)	-102	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase beta pseudogene	pseudo
0.93665-4	chr6	7086031	7086530	+	0	NA	Intergenic	Intergenic	-21550	NM_001168344	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
0.268721-9	chr19	4981477	4981976	+	0	NA	intron (NM_015015, intron 1 of 22)	intron (NM_015015, intron 1 of 22)	12602	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding
0.376307-35	chr6	34111561	34112060	+	0	NA	intron (NM_001256811, intron 1 of 9)	CpG	2104	NM_001256811	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
7.14443-10	chr16	8815673	8816172	+	0	NA	intron (NM_001127448, intron 1 of 15)	MER113|DNA|hAT-Charlie	1349	NM_001127448	18	Hs.336768	NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
4.49772-3	chr6	17734900	17735399	+	0	NA	Intergenic	SVA_D|Other|Other	27875	NR_134618	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA
1.66853-9	chr5	107142353	107142852	+	0	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-136006	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
8.26814-12	chr19	34849973	34850472	+	0	NA	Intergenic	CpG	-5423	NM_001289789	2821	Hs.466471	NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
2.71646-15	chr16	80686269	80686768	+	0	NA	intron (NM_152342, intron 2 of 6)	L1MC3|LINE|L1	-79813	NR_104666	101928276	Hs.149769	NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
1.86419-8	chr6	138187450	138187949	+	0	NA	promoter-TSS (NM_001270507)	promoter-TSS (NM_001270507)	-626	NM_001270507	7128	Hs.211600	NM_006290	ENSG00000118503	TNFAIP3	A20|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
4.1005-6	chr22	42821563	42822062	+	0	NA	intron (NM_145912, intron 1 of 5)	intron (NM_145912, intron 1 of 5)	6589	NM_001318323	150372	Hs.436677	NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
1.51195-7	chr6	169106179	169106678	+	0	NA	Intergenic	MIRb|SINE|MIR	258049	NR_136250	105378146	Hs.343631	NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
1.70053-11	chr11	123451206	123451705	+	0	NA	intron (NM_001286563, intron 3 of 20)	intron (NM_001286563, intron 3 of 20)	20485	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
18.5699	chr22	43897655	43898154	+	0	NA	intron (NM_001044370, intron 5 of 6)	intron (NM_001044370, intron 5 of 6)	-14230	NR_046563	100874197	Hs.627997	NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
1.42065-19	chr1	228965868	228966367	+	0	NA	Intergenic	Intergenic	95293	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
5.0724-9	chr9	92742714	92743213	+	0	NA	intron (NR_109791, intron 2 of 2)	intron (NR_109791, intron 2 of 2)	11265	NR_109791	101927847	Hs.584312	NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
4.00117-9	chr13	45949304	45949803	+	0	NA	intron (NR_024458, intron 4 of 10)	intron (NR_024458, intron 4 of 10)	34073	NR_024458	100190939	Hs.375766	NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
1.22629-7	chr8	29858193	29858692	+	0	NA	Intergenic	Intergenic	-43578	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
4.44906-5	chr22	24460939	24461438	+	0	NA	intron (NM_001199281, intron 15 of 36)	SVA_D|Other|Other	53368	NM_001199281	23523	Hs.517478	NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
2.67606	chr20	60462181	60462680	+	0	NA	intron (NM_001252338, intron 6 of 14)	intron (NM_001252338, intron 6 of 14)	66288	NR_031658	100302168		NR_031658	ENSG00000130699	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
0.550241-10	chr17	617906	618405	+	0	NA	promoter-TSS (NM_018289)	promoter-TSS (NM_018289)	-59	NM_018289	55275	Hs.461819	NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53, GARP complex subunit	protein-coding
9.17215-8	chr10	106569007	106569506	+	0	NA	intron (NM_014978, intron 1 of 26)	MLT1H|LTR|ERVL-MaLR	-143282	NR_104028	100505890	Hs.348526	NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
1.04577-3	chrX	37430565	37431064	+	0	NA	promoter-TSS (NM_001170331)	promoter-TSS (NM_001170331)	-8	NM_198511	347404	Hs.521932	NM_198511	ENSG00000147036	LANCL3	-	LanC like 3	protein-coding
1.79799-27	chr1	10853834	10854333	+	0	NA	intron (NM_017766, intron 1 of 15)	CpG	2650	NM_017766	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
1.70696-17	chr9	82185211	82185710	+	0	NA	Intergenic	Intergenic	-1228	NM_007005	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
4.55932-15	chr2	219523339	219523838	+	0	NA	promoter-TSS (NM_001320717)	promoter-TSS (NM_001320717)	675	NM_001105537	7701	Hs.657969	NM_005081	ENSG00000115568	ZNF142	pHZ-49	zinc finger protein 142	protein-coding
0.0744648-22	chr14	35451509	35452008	+	0	NA	promoter-TSS (NM_001146282)	promoter-TSS (NM_001146282)	-346	NM_001146282	6729	Hs.167535	NM_003136	ENSG00000100883	SRP54	-	signal recognition particle 54	protein-coding
1.38466-16	chr1	245473771	245474270	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	155733	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
24.2597-2	chr15	99289894	99290393	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-37512	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
0.282604-5	chr8	25902932	25903431	+	0	NA	promoter-TSS (NM_022659)	promoter-TSS (NM_022659)	-541	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
0.291884-43	chr1	739952	740451	+	0	NA	Intergenic	Intergenic	-12550	NR_103536	400728	Hs.568078	NM_207464	ENSG00000177757	FAM87B	-	family with sequence similarity 87 member B	ncRNA
1.20904-22	chr11	19366508	19367007	+	0	NA	Intergenic	CpG	-5514	NM_001111018	89797	Hs.64341	NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
1.15205-7	chr16	23568556	23569055	+	0	NA	promoter-TSS (NM_019116)	promoter-TSS (NM_019116)	-57	NM_019116	56061	Hs.3459	NM_019116	ENSG00000103353	UBFD1	UBPH	ubiquitin family domain containing 1	protein-coding
3.63512-11	chr11	79211369	79211868	+	0	NA	Intergenic	SVA_B|Other|Other	-59923	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4	teneurin transmembrane protein 4	protein-coding
1.43271-9	chr16	15012470	15012969	+	0	NA	Intergenic	CpG	-7075	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
5.9176-8	chr1	60225046	60225545	+	0	NA	intron (NM_001278224, intron 9 of 9)	intron (NM_001278224, intron 9 of 9)	-13172	NR_110627	101926944	Hs.720353	NR_110627		LOC101926944	-	uncharacterized LOC101926944	ncRNA
3.48722-6	chr12	73402934	73403433	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-149787	NR_110130	101928137	Hs.694666	NR_110130	ENSG00000258123	LOC101928137	-	uncharacterized LOC101928137	ncRNA
11.7263	chr20	49650167	49650666	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-10741	NM_002237	3755	Hs.118695	NM_002237	ENSG00000026559	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel modifier subfamily G member 1	protein-coding
0.920515	chr22	37882264	37882763	+	0	NA	promoter-TSS (NM_002405)	promoter-TSS (NM_002405)	-35	NM_002405	4242	Hs.517603	NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
0.296531-35	chr20	30697192	30697691	+	0	NA	5' UTR (NM_014742, exon 1 of 18)	5' UTR (NM_014742, exon 1 of 18)	132	NM_014742	9777	Hs.654665	NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
0.788339-6	chr11	30939328	30939827	+	0	NA	intron (NM_020869, intron 6 of 19)	intron (NM_020869, intron 6 of 19)	74656	NM_020869	100506627	Hs.530438	NM_020869	ENSG00000170959	DCDC5	-	doublecortin domain containing 5	protein-coding
2.84833-4	chr11	45917873	45918372	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	10711	NM_001080446	143678	Hs.193741	NM_001080446	ENSG00000234776	C11orf94	-	chromosome 11 open reading frame 94	protein-coding
36.3827	chr6	166891481	166891980	+	0	NA	intron (NM_001318937, intron 8 of 18)	intron (NM_001318937, intron 8 of 18)	-12859	NR_046793	100874353	Hs.675698	NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
1.44481-3	chr4	55448247	55448746	+	0	NA	Intergenic	Intergenic	24802	NR_134657	339978		NR_134657	ENSG00000250456	LOC339978	-	uncharacterized LOC339978	ncRNA
2.27678-6	chr16	85364304	85364803	+	0	NA	Intergenic	Intergenic	-24622	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
0.746879-12	chr11	18921644	18922143	+	0	NA	Intergenic	LTR5B|LTR|ERVK	34656	NM_147199	259249	Hs.711459	NM_147199	ENSG00000170255	MRGPRX1	GPCR|MGRG2|MRGX1|SNSR4	MAS related GPR family member X1	protein-coding
0.433514-4	chr11	4658092	4658591	+	0	NA	Intergenic	Intergenic	-2604	NM_001004751	390038	Hs.553728	NM_001004751	ENSG00000197428	OR51D1	OR11-14|OR51D1Q	olfactory receptor family 51 subfamily D member 1	protein-coding
2.35824-9	chr12	107711397	107711896	+	0	NA	promoter-TSS (NM_001018072)	promoter-TSS (NM_001018072)	-551	NM_001347943	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding
0.404816-13	chr3	19589109	19589608	+	0	NA	Intergenic	Intergenic	-232935	NR_039954	100616291		NR_039954	ENSG00000271898	MIR4791	mir-4791	microRNA 4791	ncRNA
11.2668-5	chr3	151953648	151954147	+	0	NA	Intergenic	Intergenic	-30679	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
1.0902-11	chr20	17511575	17512074	+	0	NA	exon (NM_001195, exon 1 of 8)	exon (NM_001195, exon 1 of 8)	190	NM_001195	631	Hs.129702	NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
0.118872-58	chr2	151342798	151343707	+	0	NA	exon (NM_001254738, exon 2 of 5)	exon (NM_001254738, exon 2 of 5)	957	NM_001254738	390	Hs.6838	NM_005168	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
23.7469	chr11	119905892	119906391	+	0	NA	Intergenic	Intergenic	93480	NM_001330382	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
0.540393-8	chr3	88675764	88676263	+	0	NA	Intergenic	Intergenic	-476997	NM_001195308	8545	Hs.444818	NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
0.741724-5	chr1	234634766	234635265	+	0	NA	Intergenic	Intergenic	-20166	NM_005646	6894	Hs.498115	NM_005646	ENSG00000059588	TARBP1	TRM3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
7.74691-16	chr12	98548573	98549072	+	0	NA	Intergenic	Intergenic	-159596	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA
3.85103-13	chr10	30673718	30674217	+	0	NA	Intergenic	LTR18B|LTR|ERVL	-13131	NR_120609	729668	Hs.652158	NR_003524		GOLGA2P6	-	golgin A2 pseudogene 6	pseudo
0.109954-14	chr2	172455172	172455671	+	0	NA	Intergenic	L1MC5|LINE|L1	76555	NM_001127383	79901	Hs.221941	NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
1.39063-3	chr7	156803388	156804279	+	0	NA	promoter-TSS (NM_005515)	promoter-TSS (NM_005515)	282	NR_038835	645249	Hs.224879	NR_038835	ENSG00000243479	MNX1-AS1	CCAT5	MNX1 antisense RNA 1 (head to head)	ncRNA
1.39063	chr10	88304742	88305241	+	0	NA	Intergenic	Intergenic	-23450	NM_001318328	23063	Hs.203099	NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
13.9254	chr8	102063363	102064356	+	0	NA	promoter-TSS (NR_033962)	promoter-TSS (NR_033962)	-423	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA
7.98603-9	chr1	243416673	243417172	+	0	NA	intron (NM_001042404, intron 1 of 18)	intron (NM_001042404, intron 1 of 18)	1786	NM_001042405	9859	Hs.533635	NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
0.0217692-23	chr11	64053809	64054308	+	0	NA	exon (NM_020155, exon 1 of 7)	exon (NM_020155, exon 1 of 7)	476	NM_020155	56834	Hs.523763	NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
10.575-2	chr17	35843444	35843943	+	0	NA	Intergenic	Intergenic	-6258	NM_007026	11072	Hs.91448	NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
3.36299-8	chr10	38299261	38300153	+	0	NA	exon (NM_001278170, exon 1 of 4)	exon (NM_001278170, exon 1 of 4)	129	NM_001278174	7581	Hs.435774	NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
0.172766-9	chr1	36598986	36599485	+	0	NA	Intergenic	MIR|SINE|MIR	-8550	NM_001294347	1296	Hs.353001	NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
0.254883-10	chr3	186524426	186524925	+	0	NA	promoter-TSS (NM_181573)	promoter-TSS (NM_181573)	-191	NM_181573	5984	Hs.732098	NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
3.79864-3	chr8	135918243	135918742	+	0	NA	Intergenic	Intergenic	56314	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
7.64472-11	chr1	234614100	234614599	+	0	NA	exon (NM_005646, exon 1 of 30)	exon (NM_005646, exon 1 of 30)	500	NM_005646	6894	Hs.498115	NM_005646	ENSG00000059588	TARBP1	TRM3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
2.71646-13	chr16	29818913	29819412	+	0	NA	intron (NM_002383, intron 2 of 4)	CpG	1304	NR_074080	4150	Hs.23650	NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
1.29596-9	chr13	114566438	114566937	+	0	NA	promoter-TSS (NR_044993)	promoter-TSS (NR_044993)	389	NM_000820	2621	Hs.646346	NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
0.0833099-55	chr12	121342010	121342509	+	0	NA	promoter-TSS (NR_131215)	promoter-TSS (NR_131215)	-104	NM_139015	121665	Hs.507087	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
1.07905	chr16	27237219	27237718	+	0	NA	intron (NM_145080, intron 6 of 7)	L1M5|LINE|L1	22172	NM_001145348	79831	Hs.145717	NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
0.0877392-14	chr13	53024066	53024565	+	0	NA	promoter-TSS (NM_001282169)	promoter-TSS (NM_001282169)	64	NM_001282169	51028	Hs.109520	NM_016075	ENSG00000136100	VPS36	C13orf9|CGI-145|EAP45	vacuolar protein sorting 36 homolog	protein-coding
0.783135-17	chrX	31054899	31055398	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	35022	NM_031894	53940	Hs.333125	NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
3.72634-8	chr9	88356913	88357412	+	0	NA	promoter-TSS (NM_001286717)	promoter-TSS (NM_001286717)	-218	NM_001286717	23287	Hs.719980	NM_015239	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
1.49354-8	chr1	149764015	149764863	+	0	NA	TTS (NM_000566)	TTS (NM_000566)	10189	NM_000566	2209	Hs.77424	NM_000566	ENSG00000150337	FCGR1A	CD64|CD64A|FCRI|IGFR1	Fc fragment of IgG receptor Ia	protein-coding
0.268721-62	chr5	28012588	28013087	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	274935	NR_134265	105374698	Hs.124461	NR_134265	ENSG00000249785	LINC02103	-	long intergenic non-protein coding RNA 2103	ncRNA
0.675262-27	chr7	127077741	127078240	+	0	NA	Intergenic	Intergenic	-38947	NR_110024	100506682	Hs.148450	NR_110024	ENSG00000226770	LOC100506682	-	uncharacterized LOC100506682	ncRNA
0.680339	chr6	28890851	28891350	+	0	NA	exon (NM_006510, exon 1 of 8)	exon (NM_006510, exon 1 of 8)	668	NM_006510	5987	Hs.440382	NM_006510	ENSG00000204713	TRIM27	RFP|RNF76	tripartite motif containing 27	protein-coding
1.63043-11	chr19	36296414	36296913	+	0	NA	intron (NM_021232, intron 8 of 10)	intron (NM_021232, intron 8 of 10)	7538	NM_021232	58510	Hs.515366	NM_021232	ENSG00000250799	PRODH2	HSPOX1|HYPDH	proline dehydrogenase 2	protein-coding
0.338583-8	chr22	44244569	44245068	+	0	NA	intron (NM_014351, intron 1 of 6)	intron (NM_014351, intron 1 of 6)	13560	NM_014351	25830	Hs.189810	NM_014351	ENSG00000130540	SULT4A1	BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1	sulfotransferase family 4A member 1	protein-coding
0.840728-13	chr10	105599875	105600374	+	0	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	15040	NM_014631	9644	Hs.678727	NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
1.0902-8	chr19	19976365	19976864	+	0	NA	promoter-TSS (NM_021047)	promoter-TSS (NM_021047)	-25	NM_001331133	56242	Hs.301059	NM_021047	ENSG00000256771	ZNF253	BMZF-1|BMZF1|ZNF411	zinc finger protein 253	protein-coding
0.136762-6	chr3	150479465	150479964	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	1549	NM_005067	6478	Hs.477959	NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
3.27902-5	chr6	119214987	119215486	+	0	NA	promoter-TSS (NM_014034)	promoter-TSS (NM_014034)	-5	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
5.22879-5	chr5	153576873	153577372	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	6827	NM_198321	55568	Hs.631797	NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
4.62181	chr6	33165174	33165673	+	0	NA	intron (NM_021976, intron 4 of 9)	intron (NM_021976, intron 4 of 9)	3050	NM_021976	6257	Hs.388034	NM_021976	ENSG00000204231	RXRB	DAUDI6|H-2RIIBP|NR2B2|RCoR-1	retinoid X receptor beta	protein-coding
13.5458	chr17	56381196	56381998	+	0	NA	intron (NM_001261835, intron 31 of 31)	intron (NM_001261835, intron 31 of 31)	-21214	NR_038410	100506779	Hs.718477	NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1 antisense RNA 1	ncRNA
2.02732	chr1	90286188	90286687	+	0	NA	promoter-TSS (NM_001134479)	promoter-TSS (NM_001134479)	-136	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
1.0513-7	chr2	96874385	96874884	+	0	NA	promoter-TSS (NM_020151)	promoter-TSS (NM_020151)	-61	NM_020151	56910	Hs.469331	NM_020151	ENSG00000084090	STARD7	GTT1	StAR related lipid transfer domain containing 7	protein-coding
0.264104-2	chr19	2427383	2427882	+	0	NA	TTS (NM_032737)	TTS (NM_032737)	282	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
2.02732-17	chr18	61572541	61573040	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-2434	NM_005024	5273	Hs.158339	NM_005024	ENSG00000242550	SERPINB10	PI-10|PI10	serpin family B member 10	protein-coding
8.21023-5	chr2	157226169	157226668	+	0	NA	Intergenic	SVA_E|Other|Other	-37131	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
0.141246-39	chr16	67562573	67563072	+	0	NA	promoter-TSS (NR_104656)	promoter-TSS (NR_104656)	102	NM_001193522	79567	Hs.152717	NM_024519	ENSG00000039523	FAM65A	-	family with sequence similarity 65 member A	protein-coding
0.366845-3	chr12	114403966	114404465	+	0	NA	promoter-TSS (NM_001146698)	promoter-TSS (NM_001146698)	-39	NM_001146699	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding
15.1428	chr9	108372594	108373093	+	0	NA	intron (NM_006731, intron 6 of 9)	intron (NM_006731, intron 6 of 9)	-51895	NM_005421	6887	Hs.247978	NM_005421	ENSG00000186051	TAL2	-	TAL bHLH transcription factor 2	protein-coding
0.530567	chr10	92078994	92079493	+	0	NA	Intergenic	L2c|LINE|L2	221319	NR_110657	101926942	Hs.382666	NR_110657	ENSG00000236373	LOC101926942	-	uncharacterized LOC101926942	ncRNA
5.22879-7	chr4	175215221	175215720	+	0	NA	intron (NM_001145314, intron 1 of 10)	SVA_D|Other|Other	-10068	NM_012180	26269	Hs.76917	NM_012180	ENSG00000164117	FBXO8	DC10|FBS|FBX8	F-box protein 8	protein-coding
0.414361-30	chr11	59577978	59578477	+	0	NA	5' UTR (NM_017840, exon 1 of 4)	5' UTR (NM_017840, exon 1 of 4)	118	NM_017840	54948	Hs.530734	NM_017840	ENSG00000166902	MRPL16	L16mt|MRP-L16|PNAS-111	mitochondrial ribosomal protein L16	protein-coding
1.20331-10	chr2	64751140	64751639	+	0	NA	promoter-TSS (NR_136167)	promoter-TSS (NR_136167)	-50	NM_203437	54812	Hs.655167	NM_017657	ENSG00000119844	AFTPH	Nbla10388	aftiphilin	protein-coding
28.7943-3	chr5	149840732	149841231	+	0	NA	Intergenic	Intergenic	-11662	NM_001025071	6208	Hs.744846	NM_005617	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
9.35542-10	chr5	36066504	36067003	+	0	NA	intron (NR_031764, intron 1 of 5)	intron (NR_031764, intron 1 of 5)	270	NR_031764	167127	Hs.348941	NM_174914	ENSG00000168671	UGT3A2	-	UDP glycosyltransferase family 3 member A2	protein-coding
20.57-2	chr8	94531205	94531704	+	0	NA	intron (NR_033858, intron 7 of 10)	MLT1H|LTR|ERVL-MaLR	181207	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
4.89455-6	chr3	15203481	15203980	+	0	NA	Intergenic	SVA_D|Other|Other	43736	NR_027927	344875	Hs.722756	NR_027927	ENSG00000230524	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|VWA6	collagen type VI alpha 4 pseudogene 1	pseudo
0.5061-18	chr17	41446305	41446804	+	0	NA	TTS (NR_027412)	TTS (NR_027412)	19712	NR_027412	100130581	Hs.546897	NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
0.172766-28	chr2	161126119	161126618	+	0	NA	intron (NR_103775, intron 1 of 1)	CpG	2038	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
3.77786-2	chr8	134465490	134465989	+	0	NA	Intergenic	Intergenic	118444	NM_173344	6482	Hs.374257	NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
10.6198-2	chr1	183324878	183325377	+	0	NA	intron (NM_015039, intron 1 of 10)	intron (NM_015039, intron 1 of 10)	-51118	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
14.4249-3	chr1	229761944	229762443	+	0	NA	promoter-TSS (NM_014409)	promoter-TSS (NM_014409)	230	NM_014777	9816	Hs.533628	NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding
2.11832-15	chr2	181769676	181770175	+	0	NA	intron (NR_104325, intron 5 of 5)	intron (NR_104325, intron 5 of 5)	-75187	NM_001278555	10477	Hs.470804	NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
0.428718-19	chr13	50366666	50367635	+	0	NA	promoter-TSS (NM_002267)	promoter-TSS (NM_002267)	-93	NM_002267	3839	Hs.527919	NM_002267	ENSG00000102753	KPNA3	IPOA4|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
2.18245-10	chr1	183273552	183274051	+	0	NA	intron (NM_015039, intron 1 of 10)	intron (NM_015039, intron 1 of 10)	208	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
3.48722-10	chr16	84220399	84220898	+	0	NA	promoter-TSS (NM_001243156)	promoter-TSS (NM_001243156)	28	NM_001243159	9013	Hs.153022	NM_005679	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein-coding
1.07905-6	chr4	114034148	114034647	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	6378	NR_031641	100302188		NR_031641	ENSG00000283193	MIR1243	MIRN1243|hsa-mir-1243	microRNA 1243	ncRNA
5.12862-2	chr11	118972678	118973177	+	0	NA	promoter-TSS (NM_001382)	promoter-TSS (NM_001382)	-142	NM_001382	1798	Hs.524081	NM_001382	ENSG00000172269	DPAGT1	ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT	dolichyl-phosphate N-acetylglucosaminephosphotransferase 1	protein-coding
4.07823-2	chr6	44094835	44095334	+	0	NA	promoter-TSS (NM_001318769)	promoter-TSS (NM_001318769)	-40	NM_001318768	64928	Hs.311190	NM_032111	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
0.0966115-16	chr7	139929521	139930020	+	0	NA	Intergenic	Intergenic	52709	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
0.93665-16	chr8	103740605	103741104	+	0	NA	Intergenic	Intergenic	-72724	NM_005655	7071	Hs.435001	NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel like factor 10	protein-coding
8.01343-2	chr8	102756728	102757227	+	0	NA	intron (NM_001040625, intron 4 of 6)	Charlie17a|DNA|hAT-Charlie	46462	NM_032041	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
1.62412-14	chr9	94900366	94900865	+	0	NA	intron (NR_015444, intron 12 of 12)	intron (NR_015444, intron 12 of 12)	-3134	NR_027341	158314	Hs.149940	NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
0.530567-15	chr1	156578736	156579235	+	0	NA	Intergenic	Intergenic	-7706	NM_182679	54865	Hs.193832	NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4	protein-coding
15.1145-3	chr7	31815095	31815594	+	0	NA	exon (NM_001322055, exon 18 of 19)	exon (NM_001322055, exon 18 of 19)	88713	NM_006658	10842	Hs.227011	NM_006658	ENSG00000106341	PPP1R17	C7orf16|GSBS	protein phosphatase 1 regulatory subunit 17	protein-coding
0.675262	chr17	80316307	80316806	+	0	NA	promoter-TSS (NM_207459)	promoter-TSS (NM_207459)	-567	NM_207459	400629	Hs.231897	NM_207459	ENSG00000182459	TEX19	-	testis expressed 19	protein-coding
5.65431-9	chr10	73272538	73273037	+	0	NA	intron (NM_052836, intron 6 of 12)	MIR3|SINE|MIR	-1110	NR_120672	102723377	Hs.568789	NR_120672	ENSG00000223817	CDH23-AS1	C10orf106|NCRNA00223|bA327E2.3	CDH23 antisense RNA 1	ncRNA
5.40608-3	chr12	125033552	125034051	+	0	NA	intron (NM_001077261, intron 1 of 47)	MIRb|SINE|MIR	18209	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
1.70053-7	chr11	50017056	50017555	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-13234	NM_001005270	283093	Hs.553669	NM_001005270	ENSG00000221954	OR4C12	OR11-259	olfactory receptor family 4 subfamily C member 12	protein-coding
17.6195-4	chr2	145113706	145114205	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-23854	NM_001284234	79712	Hs.44780	NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
2.47184-26	chr9	136019684	136020183	+	0	NA	intron (NM_001042368, intron 1 of 17)	CpG	4674	NM_001042368	5900	Hs.106185	NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
5.8838-7	chr6	111824815	111825314	+	0	NA	TTS (NR_034111)	TTS (NR_034111)	-20146	NM_001286432	5980	Hs.232021	NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
0.101054-8	chr4	70628250	70628749	+	0	NA	Intergenic	SVA_D|Other|Other	-2069	NM_014465	27284	Hs.129742	NM_014465	ENSG00000173597	SULT1B1	ST1B1|ST1B2|SULT1B2	sulfotransferase family 1B member 1	protein-coding
11.4026-2	chr6	10837964	10838463	+	0	NA	intron (NR_134935, intron 1 of 14)	CpG	503	NR_134936	4117	Hs.446125	NM_005906	ENSG00000111837	MAK	RP62	male germ cell associated kinase	protein-coding
0.163737-26	chr7	19185355	19185854	+	0	NA	promoter-TSS (NM_152898)	promoter-TSS (NM_152898)	-560	NM_152898	222894	Hs.592168	NM_152898	ENSG00000146618	FERD3L	N-TWIST|NATO3|NTWIST|PTFB|bHLHa31	Fer3 like bHLH transcription factor	protein-coding
27.4958-2	chr7	111933388	111933887	+	0	NA	intron (NM_021994, intron 2 of 11)	AluJb|SINE|Alu	86994	NM_021994	11179	Hs.655904	NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
3.59519-8	chr19	30369817	30370316	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-44485	NM_001252641	8725	Hs.466391	NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1, prefoldin like chaperone	protein-coding
3.95774-11	chr1	63940090	63940589	+	0	NA	intron (NM_001206739, intron 5 of 9)	SVA_E|Other|Other	48605	NM_001206739	23421	Hs.166539	NM_014288	ENSG00000142856	ITGB3BP	CENP-R|CENPR|HSU37139|NRIF3|TAP20	integrin subunit beta 3 binding protein	protein-coding
6.30784-2	chr19	52674616	52675115	+	0	NA	promoter-TSS (NM_001102657)	promoter-TSS (NM_001102657)	31	NM_001102657	162962	Hs.631584	NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
0.118872-30	chr20	2633306	2633805	+	0	NA	TTS (NR_031699)	TTS (NR_031699)	132	NR_031699	100302138		NR_031699	ENSG00000101361	MIR1292	MIRN1292|hsa-mir-1292|mir-1292	microRNA 1292	ncRNA
2.89883	chr9	99637971	99638470	+	0	NA	Intergenic	CpG	7038	NR_038890	100132781	Hs.710921	NR_038890		LOC100132781	-	cyclin Y like 1 pseudogene	pseudo
1.42668-7	chr3	157595029	157595528	+	0	NA	Intergenic	Intergenic	228674	NM_001163678	6474	Hs.55967	NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	short stature homeobox 2	protein-coding
0.296531-5	chr3	14444063	14444562	+	0	NA	exon (NM_001134367, exon 6 of 23)	exon (NM_001134367, exon 6 of 23)	236	NM_001134368	6533	Hs.529488	NM_003043	ENSG00000131389	SLC6A6	TAUT	solute carrier family 6 member 6	protein-coding
0.301184-19	chr10	96990594	96991093	+	0	NA	Intergenic	Intergenic	36886	NM_207321	142827	Hs.134229	NM_207321	ENSG00000173124	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium-chain family member 6	protein-coding
0.443122-11	chrUn_gl000218	58066	58565	+	0	NA	intron (NR_037872, intron 2 of 3)	CpG	-3266	NR_027420	389834	Hs.720653	NR_027420		LOC389834	-	ankyrin repeat domain 57 pseudogene	pseudo
4.73661-3	chr11	19757254	19757753	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	-21285	NR_015384	100126784	Hs.64341	NR_015384		LOC100126784	-	uncharacterized LOC100126784	ncRNA
4.96209	chr8	145582760	145583259	+	0	NA	promoter-TSS (NM_012162)	promoter-TSS (NM_012162)	733	NM_024531	79581	Hs.6459	NM_024531	ENSG00000185803	SLC52A2	BVVLS2|D15Ertd747e|GPCR41|GPR172A|PAR1|RFT3|RFVT2|hRFT3	solute carrier family 52 member 2	protein-coding
0.550241-6	chrX	48432978	48433477	+	0	NA	intron (NM_006743, intron 1 of 6)	CpG	486	NM_006743	5935	Hs.301404	NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif (RNP1, RRM) protein 3	protein-coding
2.18963-11	chr16	57841962	57842461	+	0	NA	Intergenic	Intergenic	-2338	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
5.157-8	chr5	19546520	19547019	+	0	NA	intron (NM_001291956, intron 10 of 14)	intron (NM_001291956, intron 10 of 14)	339612	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
24.6597-2	chr20	41035335	41035834	+	0	NA	intron (NM_007050, intron 9 of 30)	MLT1K|LTR|ERVL-MaLR	-278539	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
3.24222	chr11	114154765	114155264	+	0	NA	Intergenic	Intergenic	-11521	NM_006169	4837	Hs.503911	NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
15.9346-2	chr1	222030180	222030679	+	0	NA	Intergenic	Intergenic	-16421	NR_125989	101929771	Hs.557001	NR_125989	ENSG00000227925	LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
10.6198-3	chr5	157673580	157674079	+	0	NA	Intergenic	Intergenic	162952	NR_109888	101927697	Hs.483960	NR_109888	ENSG00000276778	LOC101927697	-	uncharacterized LOC101927697	ncRNA
0.241089-28	chr4	1606494	1606993	+	0	NA	Intergenic	Intergenic	78975	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
20.2045-7	chr2	216563234	216563733	+	0	NA	intron (NR_037195, intron 5 of 9)	MLT1F|LTR|ERVL-MaLR	-19283	NR_132383	105373869	Hs.152812	NR_132383		LINC01614	LCAL4	long intergenic non-protein coding RNA 1614	ncRNA
2.47184-23	chr12	131198534	131199288	+	0	NA	Intergenic	Intergenic	124908	NM_194356	2054	Hs.437585	NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
1.42065-6	chr14	50154735	50155234	+	0	NA	5' UTR (NM_001197331, exon 1 of 17)	5' UTR (NM_001197331, exon 1 of 17)	114	NM_001197331	5427	Hs.162777	NM_002692	ENSG00000100479	POLE2	DPE2	DNA polymerase epsilon 2, accessory subunit	protein-coding
0.877779-9	chr12	67202335	67202834	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-129659	NM_001178074	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
1.43271-8	chr13	87746755	87747254	+	0	NA	Intergenic	Intergenic	182829	NR_132371	106144533	Hs.525107	NR_132371		LINC00430	-	long intergenic non-protein coding RNA 430	ncRNA
10.9963-5	chr1	18438967	18439466	+	0	NA	intron (NM_032880, intron 1 of 9)	intron (NM_032880, intron 1 of 9)	4976	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding
2.62013-24	chr2	242447890	242448389	+	0	NA	promoter-TSS (NM_001271979)	promoter-TSS (NM_001271979)	-29	NM_001282306	10494	Hs.516807	NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
2.99296-22	chr1	156308293	156308792	+	0	NA	promoter-TSS (NM_001304820)	promoter-TSS (NM_001304820)	-151	NM_001304820	128229	Hs.534539	NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
1.07349-19	chr7	65516034	65516533	+	0	NA	Intergenic	AluJo|SINE|Alu	-24493	NM_000048	435	Hs.632015	NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
2.66001-7	chr16	19147118	19147617	+	0	NA	Intergenic	LTR16C|LTR|ERVL	22113	NR_028028	162073	Hs.530899	NM_001034841	ENSG00000205730	ITPRIPL2	-	inositol 1,4,5-trisphosphate receptor interacting protein like 2	protein-coding
33.5952	chr5	32254899	32255398	+	0	NA	intron (NM_001040446, intron 8 of 15)	MER102a|DNA|hAT-Charlie	57966	NM_001294343	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
12.2695	chr1	40253282	40253781	+	0	NA	intron (NM_001720, intron 1 of 6)	intron (NM_001720, intron 1 of 6)	1002	NM_001720	656	Hs.734367	NM_001720	ENSG00000116985	BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
9.39302-6	chr21	42692959	42693458	+	0	NA	intron (NM_206964, intron 1 of 6)	intron (NM_206964, intron 1 of 6)	4547	NM_058186	54097	Hs.473877	NM_058186	ENSG00000183844	FAM3B	2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44	family with sequence similarity 3 member B	protein-coding
0.594835-11	chr6	130257574	130258073	+	0	NA	Intergenic	Intergenic	-75407	NM_001010876	253582	Hs.448372	NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
0.594835	chr11	57281561	57282383	+	0	NA	intron (NM_003627, intron 1 of 14)	CpG	386	NM_001198810	8501	Hs.591952	NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
5.63837	chr8	62869745	62870244	+	0	NA	Intergenic	Intergenic	242647	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
17.3993	chr12	33591747	33592246	+	0	NA	intron (NM_198992, intron 1 of 6)	CpG	758	NM_198992	341359	Hs.118703	NM_198992	ENSG00000110975	SYT10	-	synaptotagmin 10	protein-coding
17.0553-2	chr6	159859113	159859612	+	0	NA	Intergenic	Intergenic	54799	NR_125873	102724053	Hs.98463	NR_125873	ENSG00000234777	LOC102724053	-	uncharacterized LOC102724053	ncRNA
54.1454	chr2	191728622	191729121	+	0	NA	Intergenic	Intergenic	-16676	NM_001256310	2744	Hs.116448	NM_014905	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
9.66576-4	chr22	27858162	27858661	+	0	NA	Intergenic	Intergenic	151799	NR_134581	100507657	Hs.537371	NR_134581	ENSG00000226741	LOC100507657	-	uncharacterized LOC100507657	ncRNA
9.914-9	chr17	30625291	30625790	+	0	NA	intron (NM_001330181, intron 5 of 7)	MIRc|SINE|MIR	32345	NM_001330181	162494	Hs.655027	NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
3.38187	chr15	97859507	97860006	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	205285	NR_120324	101927286	Hs.611279	NR_120324	ENSG00000259664	LOC101927286	-	uncharacterized LOC101927286	ncRNA
1.00179-14	chr17	12692620	12693119	+	0	NA	promoter-TSS (NM_001321167)	promoter-TSS (NM_001321167)	40	NM_001321164	9912	Hs.499758	NM_014859	ENSG00000006740	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding
1.35489-19	chr11	110071977	110072476	+	0	NA	intron (NM_001260495, intron 7 of 8)	intron (NM_001260495, intron 7 of 8)	95211	NM_001260495	5962	Hs.263671	NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
0.291884-41	chr2	149013395	149013894	+	0	NA	intron (NM_018328, intron 4 of 14)	HERVL18-int|LTR|ERVL	-234471	NM_181742	5000	Hs.558364	NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
16.8613-4	chr13	46945531	46946030	+	0	NA	intron (NM_001286766, intron 1 of 12)	intron (NM_001286766, intron 1 of 12)	15855	NM_001286762	80183	Hs.98117	NM_025113	ENSG00000102445	RUBCNL	C13orf18|KIAA0226L	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding
0.570004-10	chr10	21814342	21815096	+	0	NA	promoter-TSS (NM_207371)	promoter-TSS (NM_207371)	-108	NM_207371	387640	Hs.350848	NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
1.2436-8	chr19	41833470	41833969	+	0	NA	Intergenic	Intergenic	17334	NM_001346100	90324	Hs.437497	NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
0.958256-3	chr1	198128184	198128683	+	0	NA	intron (NM_133494, intron 1 of 9)	(GGAA)n|Simple_repeat|Simple_repeat	2325	NM_133494	140609	Hs.24119	NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
1.07349-21	chr3	176497786	176498285	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	36754	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
7.16699-11	chr18	71707899	71708398	+	0	NA	Intergenic	Intergenic	106851	NM_152676	201456	Hs.664011	NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
3.20572-2	chr5	16096872	16097371	+	0	NA	intron (NM_001102562, intron 2 of 3)	intron (NM_001102562, intron 2 of 3)	82776	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane associated ring-CH-type finger 11	protein-coding
10.2872-2	chr5	38433394	38433893	+	0	NA	intron (NM_152403, intron 15 of 21)	intron (NM_152403, intron 15 of 21)	-11935	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
8.8941-4	chr9	38325495	38325994	+	0	NA	Intergenic	SVA_F|Other|Other	-66917	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
2.22573-6	chr3	156398734	156399233	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	4530	NM_001184718	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
27.0333	chr14	44924779	44925278	+	0	NA	Intergenic	Intergenic	51471	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
0.47692-27	chr7	42951166	42951898	+	0	NA	exon (NM_001099858, exon 1 of 2)	exon (NM_001099858, exon 1 of 2)	157	NM_024054	79020	Hs.698120	NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
0.899095-12	chr17	43176394	43176893	+	0	NA	intron (NM_021079, intron 7 of 11)	intron (NM_021079, intron 7 of 11)	15158	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
4.11168-4	chr9	103235824	103236323	+	0	NA	intron (NM_003692, intron 1 of 9)	CpG	553	NM_003692	8577	Hs.598100	NM_003692	ENSG00000241697	TMEFF1	C9orf2|CT120.1|H7365|TR-1	transmembrane protein with EGF like and two follistatin like domains 1	protein-coding
0.525663-6	chr6	157351149	157351648	+	0	NA	intron (NM_020732, intron 5 of 19)	MLT1H|LTR|ERVL-MaLR	-250533	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
6.28932-5	chr5	93137172	93137671	+	0	NA	intron (NM_032042, intron 8 of 10)	intron (NM_032042, intron 8 of 10)	-60112	NM_153216	134187	Hs.678995	NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
5.37602-13	chr9	139419576	139420075	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-5747	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
0.15923-14	chr9	132586269	132586768	+	0	NA	promoter-TSS (NM_000113)	promoter-TSS (NM_000113)	-77	NM_000113	1861	Hs.534312	NM_000113	ENSG00000136827	TOR1A	DQ2|DYT1	torsin family 1 member A	protein-coding
12.0482	chr8	62703456	62703955	+	0	NA	Intergenic	Intergenic	76358	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
13.4969-2	chr3	95473180	95473679	+	0	NA	Intergenic	Intergenic	-71392	NR_077228	100287639	Hs.591320	NR_077228	ENSG00000244681	MTHFD2P1	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudo
0.604807-8	chr2	2335592	2336091	+	0	NA	promoter-TSS (NM_001329844)	promoter-TSS (NM_001329844)	-756	NM_015025	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
4.08935-7	chr19	10230385	10230884	+	0	NA	promoter-TSS (NM_003755)	promoter-TSS (NM_003755)	-34	NM_003755	8666	Hs.529059	NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
0.952845-3	chr17	33307972	33308471	+	0	NA	intron (NM_013975, intron 1 of 19)	CpG	704	NM_002311	3980	Hs.100299	NM_002311	ENSG00000005156	LIG3	LIG2	DNA ligase 3	protein-coding
0.145735-17	chr20	5730741	5731240	+	0	NA	promoter-TSS (NM_001303479)	promoter-TSS (NM_001303479)	-43	NM_001303478	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
4.25969-19	chr12	31477865	31478656	+	0	NA	non-coding (NR_026806, exon 1 of 1)	non-coding (NR_026806, exon 1 of 1)	861	NM_001135811	58516	Hs.505154	NM_021238	ENSG00000139146	FAM60A	C12orf14|L4|TERA	family with sequence similarity 60 member A	protein-coding
1.84422	chr6	150921698	150922197	+	0	NA	intron (NM_001329799, intron 1 of 15)	CpG	946	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
0.357404-3	chr1	20713118	20713617	+	0	NA	intron (NR_033887, intron 6 of 11)	intron (NR_033887, intron 6 of 11)	41920	NR_033887	339505	Hs.633269	NR_033887		LINC01141	-	long intergenic non-protein coding RNA 1141	ncRNA
1.19186-5	chr10	80798567	80799066	+	0	NA	intron (NR_015429, intron 3 of 7)	MSTB1|LTR|ERVL-MaLR	28389	NR_015429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
0.877779-11	chr10	27792826	27793325	+	0	NA	promoter-TSS (NM_001256411)	promoter-TSS (NM_001256411)	-28	NM_001256415	22931	Hs.406799	NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
13.0452	chr1	114751207	114751706	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-54984	NM_001270805	148281	Hs.370963	NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
4.76254-4	chr11	64879993	64880492	+	0	NA	TTS (NM_013265)	TTS (NM_013265)	916	NM_001277233	7108	Hs.31130	NM_003273	ENSG00000149809	TM7SF2	ANG1|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
2.38072-17	chr15	61913258	61913757	+	0	NA	Intergenic	Intergenic	-392005	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
0.76756-30	chr4	18323587	18324086	+	0	NA	Intergenic	Intergenic	-300338	NR_136669	254251	Hs.446201	NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
3.7059-9	chr3	104971809	104972308	+	0	NA	Intergenic	Intergenic	-113499	NM_001243283	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
10.1954	chr6	95188344	95188843	+	0	NA	Intergenic	Intergenic	771792	NR_015362	643432	Hs.509936	NR_015362		TSG1	-	tumor suppressor TSG1	ncRNA
2.18245-13	chr1	220044767	220045266	+	0	NA	Intergenic	AluJb|SINE|Alu	-1603	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
2.74088-5	chr5	67121893	67122392	+	0	NA	Intergenic	Intergenic	33101	NR_130779	101928858	Hs.334066	NR_130779	ENSG00000249364	LOC101928858	-	uncharacterized LOC101928858	ncRNA
1.98596-7	chr15	72564832	72565331	+	0	NA	promoter-TSS (NR_136606)	promoter-TSS (NR_136606)	-165	NR_136607	56965	Hs.270244	NM_020213	ENSG00000137817	PARP6	ARTD17|PARP-6-B1|PARP-6-C|pART17	poly(ADP-ribose) polymerase family member 6	protein-coding
1.98596-12	chr2	48010634	48011133	+	0	NA	promoter-TSS (NM_001281494)	promoter-TSS (NM_001281494)	-211	NM_001281494	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|p160	mutS homolog 6	protein-coding
7.25842-9	chr10	44884645	44885144	+	0	NA	Intergenic	Intergenic	-4349	NM_001033886	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1	C-X-C motif chemokine ligand 12	protein-coding
0.958256	chr6	39270866	39271365	+	0	NA	intron (NM_001135111, intron 4 of 5)	intron (NM_001135111, intron 4 of 5)	11121	NM_031460	89822	Hs.162282	NM_031460	ENSG00000124780	KCNK17	K2p17.1|TALK-2|TALK2|TASK-4|TASK4	potassium two pore domain channel subfamily K member 17	protein-coding
0.352691-4	chr17	27475746	27476245	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-8598	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
1.81115-20	chr19	45909527	45910026	+	0	NA	promoter-TSS (NM_001142502)	promoter-TSS (NM_001142502)	-169	NM_001142502	10848	Hs.466937	NM_006663	ENSG00000104881	PPP1R13L	IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
1.49967-5	chr15	23442937	23443436	+	0	NA	intron (NR_033350, intron 12 of 17)	intron (NR_033350, intron 12 of 17)	8116	NR_033350	390535	Hs.454647	NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
2.45652-9	chr8	48874038	48874537	+	0	NA	intron (NM_005914, intron 2 of 15)	intron (NM_005914, intron 2 of 15)	1524	NM_005914	4173	Hs.460184	NM_005914	ENSG00000104738	MCM4	CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21	minichromosome maintenance complex component 4	protein-coding
0.0921731-7	chr2	20397701	20398200	+	0	NA	Intergenic	Intergenic	26977	NM_002997	6382	Hs.224607	NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
4.55932-14	chr12	53894769	53895268	+	0	NA	promoter-TSS (NM_134324)	promoter-TSS (NM_134324)	313	NM_134323	6895	Hs.326	NM_004178	ENSG00000139546	TARBP2	LOQS|TRBP|TRBP1|TRBP2	TARBP2, RISC loading complex RNA binding subunit	protein-coding
4.67246-2	chr4	134545908	134546407	+	0	NA	Intergenic	Intergenic	475712	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
17.167-2	chr9	136713567	136714066	+	0	NA	intron (NM_001134398, intron 3 of 29)	intron (NM_001134398, intron 3 of 29)	-108739	NM_007101	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
1.6813-10	chr16	72994886	72995385	+	0	NA	intron (NM_006885, intron 1 of 9)	intron (NM_006885, intron 1 of 9)	87139	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
17.7728-2	chr1	244363892	244364391	+	0	NA	Intergenic	Intergenic	147634	NM_006352	10472	Hs.69997	NM_006352	ENSG00000179456	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
7.37549-5	chr11	78701239	78701738	+	0	NA	intron (NM_001098816, intron 6 of 33)	intron (NM_001098816, intron 6 of 33)	411665	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
0.296531-40	chr3	105588004	105588503	+	0	NA	promoter-TSS (NM_001321788)	promoter-TSS (NM_001321788)	13	NM_001321790	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
12.0971-6	chr2	25109378	25109877	+	0	NA	intron (NM_004036, intron 2 of 21)	intron (NM_004036, intron 2 of 21)	33259	NM_001320613	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC-III|AC3	adenylate cyclase 3	protein-coding
6.28932-7	chrX	130464638	130465137	+	0	NA	Intergenic	Intergenic	-41484	NM_001170961	3547	Hs.22111	NM_001555	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	immunoglobulin superfamily member 1	protein-coding
5.33132-6	chr2	64511893	64512392	+	0	NA	Intergenic	Intergenic	-55751	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
11.3136-3	chr19	18762285	18762784	+	0	NA	intron (NM_001345983, intron 1 of 2)	intron (NM_001345983, intron 1 of 2)	7086	NM_001345983	55295	Hs.250632	NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
1.44481-18	chr5	188445	188944	+	0	NA	3' UTR (NM_052909, exon 18 of 18)	3' UTR (NM_052909, exon 18 of 18)	-2932	NM_001080478	389257	Hs.683662	NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
2.58061-10	chr6	88639443	88639942	+	0	NA	Intergenic	Intergenic	-117815	NM_030960	81833	Hs.161241	NM_030960	ENSG00000118434	SPACA1	SAMP32	sperm acrosome associated 1	protein-coding
7.67004-3	chr13	110416713	110417212	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	21952	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
0.0261362-6	chr1	161734972	161735471	+	0	NA	promoter-TSS (NM_007348)	promoter-TSS (NM_007348)	-813	NM_007348	22926	Hs.492740	NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A	activating transcription factor 6	protein-coding
23.6351	chr5	7565576	7566075	+	0	NA	intron (NM_020546, intron 3 of 24)	intron (NM_020546, intron 3 of 24)	169482	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
5.867-8	chr5	16673243	16673742	+	0	NA	intron (NM_012334, intron 36 of 40)	intron (NM_012334, intron 36 of 40)	-56325	NM_001034850	54463	Hs.481704	NM_019000	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134 member B	protein-coding
0.25028-31	chr17	42401961	42402460	+	0	NA	promoter-TSS (NM_001321241)	promoter-TSS (NM_001321241)	28	NM_001321241	51629	Hs.744880	NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
6.51695-13	chr3	191797381	191797880	+	0	NA	Intergenic	Intergenic	-158789	NR_046596	100873986	Hs.581652	NR_046596	ENSG00000231383	FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
0.305841-13	chr5	6765712	6766211	+	0	NA	Intergenic	Intergenic	19860	NM_001171806	11044	Hs.481542	NM_006999	ENSG00000112941	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	poly(A) RNA polymerase D7, non-canonical	protein-coding
12.233-3	chr12	125551565	125552064	+	0	NA	intron (NM_023928, intron 1 of 17)	intron (NM_023928, intron 1 of 17)	1901	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
0.163737-15	chr6	134175316	134175815	+	0	NA	TTS (NR_027030)	TTS (NR_027030)	33280	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
4.44906-6	chr16	57673032	57673531	+	0	NA	promoter-TSS (NM_001145774)	promoter-TSS (NM_001145774)	74	NM_001145774	9289	Hs.513633	NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
4.73661-2	chr1	28559235	28559734	+	0	NA	promoter-TSS (NM_014280)	promoter-TSS (NM_014280)	58	NM_014280	22826	Hs.433540	NM_014280	ENSG00000126698	DNAJC8	HSPC331|SPF31	DnaJ heat shock protein family (Hsp40) member C8	protein-coding
2.47184-20	chr5	127607639	127608138	+	0	NA	intron (NM_001999, intron 61 of 64)	intron (NM_001999, intron 61 of 64)	188405	NR_046207	6558	Hs.162585	NM_001046	ENSG00000064651	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
0.123337-7	chr2	85108040	85108539	+	0	NA	promoter-TSS (NM_001080824)	promoter-TSS (NM_001080824)	80	NM_001307978	129293	Hs.469134	NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
0.979971-9	chr8	119123149	119123648	+	0	NA	5' UTR (NM_000127, exon 1 of 11)	5' UTR (NM_000127, exon 1 of 11)	660	NM_000127	2131	Hs.492618	NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
0.0261362-2	chr5	139536618	139537117	+	0	NA	promoter-TSS (NR_130738)	promoter-TSS (NR_130738)	-37	NR_130738	101929719	Hs.150064	NR_130738	ENSG00000254363	LOC101929719	-	uncharacterized LOC101929719	ncRNA
12.4489-4	chr14	52569981	52570480	+	0	NA	Intergenic	Intergenic	-34284	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
1.14639-7	chr1	18525784	18526283	+	0	NA	intron (NM_032880, intron 1 of 9)	intron (NM_032880, intron 1 of 9)	91793	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding
4.17937-4	chr2	200320922	200321421	+	0	NA	intron (NM_001172517, intron 2 of 11)	CpG-15850	1648	NM_001172509	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
0.705811-3	chr5	6453133	6453632	+	0	NA	intron (NM_001145161, intron 1 of 1)	MIRc|SINE|MIR	4646	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
0.347983-13	chr17	74349963	74350462	+	0	NA	promoter-TSS (NM_002766)	promoter-TSS (NM_002766)	18	NM_002766	5635	Hs.77498	NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
1.42065-3	chr8	61967056	61967555	+	0	NA	Intergenic	Intergenic	-86998	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
2.75724	chr10	21784560	21785059	+	0	NA	TTS (NR_031736)	TTS (NR_031736)	761	NR_031736	100302129		NR_031736	ENSG00000222071	MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
16.1979-4	chr4_gl000193_random	82863	83362	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	5263	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
10.2826	chr16	74463917	74464416	+	0	NA	Intergenic	Intergenic	-8798	NM_001011880	497190	Hs.454670	NM_001011880	ENSG00000140839	CLEC18B	MRCL2	C-type lectin domain family 18 member B	protein-coding
4.23659-2	chr15	74219297	74219796	+	0	NA	exon (NM_005576, exon 1 of 7)	exon (NM_005576, exon 1 of 7)	581	NR_040066	100287616	Hs.599785	NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
4.52225	chr1	114647982	114648481	+	0	NA	intron (NM_001270805, intron 3 of 7)	intron (NM_001270805, intron 3 of 7)	46831	NM_205848	148281	Hs.370963	NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
16.3264-2	chr3	13163567	13164066	+	0	NA	Intergenic	L2a|LINE|L2	-49199	NM_001134382	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
2.44125-6	chr2	231440373	231440872	+	0	NA	Intergenic	Intergenic	124622	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
17.6955	chr6	77151579	77152078	+	0	NA	Intergenic	Intergenic	-369433	NM_001282368	3617	Hs.590893	NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding
61.7134	chr7	37799090	37799589	+	0	NA	Intergenic	Intergenic	75961	NM_001329993	353345	Hs.563492	NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
4.7237-19	chr4	174123482	174123981	+	0	NA	intron (NM_017423, intron 1 of 11)	L2b|LINE|L2	-32928	NR_134242	101930370	Hs.563191	NR_134241	ENSG00000245213	LOC101930370	-	uncharacterized LOC101930370	ncRNA
0.0305075-27	chr22	37712777	37713276	+	0	NA	Intergenic	Intergenic	34602	NM_013385	27128	Hs.170944	NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
2.22573-4	chr9	101257117	101257616	+	0	NA	intron (NM_005458, intron 4 of 18)	intron (NM_005458, intron 4 of 18)	214113	NM_005458	9568	Hs.198612	NM_005458	ENSG00000136928	GABBR2	GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099	gamma-aminobutyric acid type B receptor subunit 2	protein-coding
19.9568-5	chr3	34263092	34263591	+	0	NA	Intergenic	Intergenic	423278	NM_001256192	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
0.195421-19	chr1	27853573	27854072	+	0	NA	Intergenic	Intergenic	-37124	NM_006990	10163	Hs.469244	NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family member 2	protein-coding
3.02771	chr13	50226742	50227241	+	0	NA	Intergenic	Intergenic	24556	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
14.6344	chrX	71319836	71320335	+	0	NA	intron (NM_001013627, intron 1 of 7)	Tigger3a|DNA|TcMar-Tigger	31666	NM_001024455	340526	Hs.512180	NM_001024455	ENSG00000242732	RGAG4	6430402L03Rik|MAR5|MART5	retrotransposon gag domain containing 4	protein-coding
1.46302-10	chr3	104609902	104610401	+	0	NA	Intergenic	L2a|LINE|L2	-475406	NM_001243283	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
0.48177-15	chr8	53649575	53650074	+	0	NA	Intergenic	Intergenic	-22798	NM_001083617	9821	Hs.196102	NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
1.99283-8	chr13	42031401	42031900	+	0	NA	5' UTR (NM_014059, exon 1 of 5)	5' UTR (NM_014059, exon 1 of 5)	108	NM_014059	28984	Hs.507866	NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
5.36107-2	chr6	91006081	91006580	+	0	NA	5' UTR (NM_001170794, exon 1 of 7)	5' UTR (NM_001170794, exon 1 of 7)	297	NM_001170794	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
0.291884-32	chr8	20126412	20126911	+	0	NA	Intergenic	Intergenic	-6623	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
18.729-4	chr17	55859455	55859954	+	0	NA	Intergenic	Intergenic	-37014	NM_001282544	101927581	Hs.540784	NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
0.319843-9	chr17	62502561	62503060	+	0	NA	promoter-TSS (NM_001320597)	promoter-TSS (NM_001320597)	-6	NM_001320596	1655	Hs.279806	NM_004396	ENSG00000108654	DDX5	G17P1|HLR1|HUMP68|p68	DEAD-box helicase 5	protein-coding
4.9485-8	chr13	113446088	113446587	+	0	NA	intron (NM_032189, intron 2 of 28)	intron (NM_032189, intron 2 of 28)	-37292	NR_109811	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
2.34331-9	chr4	123936350	123936849	+	0	NA	intron (NM_001345856, intron 10 of 15)	SVA_D|Other|Other	92374	NM_001317799	166378	Hs.709648	NM_145207	ENSG00000145375	SPATA5	AFG2|EHLMRS|SPAF	spermatogenesis associated 5	protein-coding
0.315171-4	chr12	64062075	64062574	+	0	NA	promoter-TSS (NM_173812)	promoter-TSS (NM_173812)	30	NM_173812	283417	Hs.533644	NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
9.914-6	chr18	10664876	10665375	+	0	NA	non-coding (NR_110777, exon 3 of 3)	non-coding (NR_110777, exon 3 of 3)	3195	NR_110777	101927410	Hs.436902	NR_110777	ENSG00000260779	LOC101927410	-	uncharacterized LOC101927410	ncRNA
0.32452-14	chr3	141088934	141089433	+	0	NA	intron (NM_001080412, intron 3 of 7)	MLT1J1|LTR|ERVL-MaLR	46128	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
0.338583-36	chrX	30671069	30671568	+	0	NA	promoter-TSS (NM_203391)	promoter-TSS (NM_203391)	-158	NM_203391	2710	Hs.1466	NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
0.254883-54	chr16	89267764	89268263	+	0	NA	Intergenic	CpG	-1484	NM_001242757	146429	Hs.447544	NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
1.23782-3	chr12	108078841	108079340	+	0	NA	promoter-TSS (NM_001317963)	promoter-TSS (NM_001317963)	-419	NM_001317963	11137	Hs.506652	NM_007062	ENSG00000136045	PWP1	IEF-SSP-9502	PWP1 homolog, endonuclein	protein-coding
1.14639-9	chr2	131554970	131555469	+	0	NA	Intergenic	CpG	41355	NM_001105194	205147	Hs.369289	NM_152698	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
2.49492-2	chr3	175706456	175706955	+	0	NA	Intergenic	L1PA17|LINE|L1	-212584	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
0.550241-27	chr6	116832443	116832942	+	0	NA	promoter-TSS (NM_153711)	promoter-TSS (NM_153711)	-116	NM_153711	254228	Hs.105081	NM_153711	ENSG00000178033	FAM26E	C6orf188|dJ493F7.3	family with sequence similarity 26 member E	protein-coding
0.209071-26	chr13	36871361	36872318	+	0	NA	exon (NM_001198908, exon 1 of 8)	exon (NM_001198908, exon 1 of 8)	153	NM_001144982	728591	Hs.656745	NM_001144981	ENSG00000242715	CCDC169	C13orf38	coiled-coil domain containing 169	protein-coding
11.3608-3	chr2	26872165	26872664	+	0	NA	Intergenic	MIRc|SINE|MIR	-8178	NM_001029881	130106	Hs.591579	NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
2.89883-11	chr4	156345511	156346010	+	0	NA	Intergenic	SVA_B|Other|Other	-47638	NM_001039580	79884	Hs.61271	NM_001039580	ENSG00000164114	MAP9	ASAP	microtubule associated protein 9	protein-coding
5.43634-6	chr1	46785927	46786426	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	16891	NM_006004	7388	Hs.481571	NM_006004	ENSG00000173660	UQCRH	QCR6|UQCR8	ubiquinol-cytochrome c reductase hinge protein	protein-coding
1.49354-16	chr1	120156310	120156809	+	0	NA	Intergenic	L2c|LINE|L2	-14645	NR_036540	644242	Hs.515383	NR_036540	ENSG00000260941	LINC00622	-	long intergenic non-protein coding RNA 622	ncRNA
3.27902-6	chr5	139236315	139236814	+	0	NA	intron (NM_001184935, intron 3 of 7)	L2a|LINE|L2	61158	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
2.33587-12	chr2	242827648	242828147	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	4383	NR_110220	101927289	Hs.130180	NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
1.26679-5	chr2	74208161	74208660	+	0	NA	non-coding (NR_104029, exon 1 of 2)	non-coding (NR_104029, exon 1 of 2)	156	NR_104029	100874048	Hs.600674	NR_104029	ENSG00000237883	DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
0.604807-11	chr19	3516739	3517238	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	-5966	NM_001136197	51343	Hs.413133	NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1	fizzy/cell division cycle 20 related 1	protein-coding
0.254883	chr20	13765337	13765836	+	0	NA	promoter-TSS (NM_016649)	promoter-TSS (NM_016649)	-7	NM_001276380	51575	Hs.369284	NM_016649	ENSG00000089048	ESF1	ABTAP|C20orf6|HDCMC28P|bA526K24.1	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding
0.788339-18	chr7	50132209	50132708	+	0	NA	intron (NM_007009, intron 1 of 7)	intron (NM_007009, intron 1 of 7)	402	NM_007009	11055	Hs.388841	NM_007009	ENSG00000042813	ZPBP	ZPBP1	zona pellucida binding protein	protein-coding
14.437-2	chr13	95365038	95365537	+	0	NA	promoter-TSS (NM_007084)	promoter-TSS (NM_007084)	317	NR_046514	100507533	Hs.556071	NR_046514	ENSG00000227640	SOX21-AS1	-	SOX21 antisense RNA 1 (head to head)	ncRNA
2.45652-4	chr4	159689766	159690265	+	0	NA	promoter-TSS (NM_001346043)	promoter-TSS (NM_001346043)	-132	NM_001346043	57600	Hs.652441	NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
19.8716-3	chr18	24507693	24508192	+	0	NA	intron (NR_026908, intron 4 of 7)	LTR5_Hs|LTR|ERVK	-62134	NM_001317387	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	MIWC|WCH4	aquaporin 4	protein-coding
3.22393-25	chr11	12728141	12728640	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	32421	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
0.254883-37	chr5	25449209	25449708	+	0	NA	Intergenic	Intergenic	258396	NR_136209	105374693	Hs.628714	NR_136209		LOC105374693	-	uncharacterized LOC105374693	ncRNA
21.0237	chr7	141130657	141131156	+	0	NA	intron (NM_001195278, intron 2 of 3)	intron (NM_001195278, intron 2 of 3)	-120172	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
0.141246-35	chr6	17865391	17865890	+	0	NA	intron (NM_022113, intron 4 of 38)	intron (NM_022113, intron 4 of 38)	122214	NM_001105568	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
0.404816-8	chr11	83148899	83149398	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-151698	NM_001286116	60492	Hs.368866	NM_021825	ENSG00000137500	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
0.101054-31	chr3	31575386	31575885	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	1642	NM_178862	201595	Hs.475812	NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3B, catalytic subunit of the oligosaccharyltransferase complex	protein-coding
8.26814-7	chr3	154920345	154920844	+	0	NA	Intergenic	Intergenic	-38140	NR_125399	101928190	Hs.121410	NR_125399	ENSG00000241336	LINC01487	-	long intergenic non-protein coding RNA 1487	ncRNA
0.123337-19	chr19	18668329	18668828	+	0	NA	promoter-TSS (NM_001171948)	promoter-TSS (NM_001171948)	6	NM_024069	79036	Hs.714548	NM_024069	ENSG00000105700	KXD1	BORCS4|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
0.867161-8	chr19	18271937	18272436	+	0	NA	non-coding (NR_073517, exon 6 of 16)	non-coding (NR_073517, exon 6 of 16)	8198	NM_005027	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
0.783135-2	chr11	11285106	11285605	+	0	NA	Intergenic	Intergenic	89549	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
0.32452-26	chr16	81525808	81526307	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-2897	NM_030629	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
1.56767-4	chr13	85744493	85744992	+	0	NA	Intergenic	Intergenic	-22550	NR_126383	104355140		NR_126383	ENSG00000226370	LINC00375	-	long intergenic non-protein coding RNA 375	ncRNA
4.24812-4	chr20	20193201	20193700	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	-155315	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
18.1816-4	chr4	25161949	25162448	+	0	NA	promoter-TSS (NM_016955)	promoter-TSS (NM_016955)	6	NM_016955	51091	Hs.253305	NM_016955	ENSG00000109618	SEPSECS	LP|PCH2D|SLA|SLA/LP	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding
0.604807-10	chr8	95624984	95625483	+	0	NA	Intergenic	Intergenic	26462	NR_034034	100288748	Hs.608210	NR_034034	ENSG00000261437	LOC100288748	-	uncharacterized LOC100288748	ncRNA
0.25028-8	chr2	68479606	68480105	+	0	NA	promoter-TSS (NM_000945)	promoter-TSS (NM_000945)	-204	NM_000945	5534	Hs.280604	NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
0.80399-4	chr2	232539441	232539940	+	0	NA	Intergenic	Intergenic	-33545	NM_001099285	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding
0.777937-18	chr17	34135893	34136392	+	0	NA	promoter-TSS (NM_003487)	promoter-TSS (NM_003487)	-317	NM_139215	8148	Hs.402752	NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
7.39929-8	chr1	200579892	200580391	+	0	NA	intron (NM_001305792, intron 2 of 27)	intron (NM_001305792, intron 2 of 27)	7825	NM_001305792	9928	Hs.3104	NM_014875	ENSG00000118193	KIF14	MKS12	kinesin family member 14	protein-coding
16.1618-4	chr4	29807381	29807880	+	0	NA	Intergenic	Intergenic	-914400	NM_032456	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
7.16699-17	chr2	128643475	128643974	+	0	NA	promoter-TSS (NM_001199140)	promoter-TSS (NM_001199140)	-210	NM_001199140	83607	Hs.546449	NM_031445	ENSG00000144233	AMMECR1L	-	AMMECR1 like	protein-coding
3.1158-12	chr1	223375230	223375729	+	0	NA	Intergenic	Intergenic	-58855	NM_003268	7100	Hs.604542	NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
0.00434512-39	chr12	125382962	125383461	+	0	NA	Intergenic	Intergenic	16376	NM_021009	7316	Hs.520348	NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
6.77781	chr8	40712423	40712922	+	0	NA	intron (NM_001135731, intron 1 of 5)	intron (NM_001135731, intron 1 of 5)	42671	NM_001135731	79698	Hs.591850	NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
51.7587	chr11	20783574	20784073	+	0	NA	intron (NM_201551, intron 2 of 18)	intron (NM_201551, intron 2 of 18)	92726	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
4.36519-19	chr11	13030535	13031034	+	0	NA	promoter-TSS (NM_001080521)	promoter-TSS (NM_001080521)	-186	NM_001080521	644943	Hs.134650	NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding
1.9044-3	chr6	143167927	143168426	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	98162	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
0.366845-25	chr7	75939786	75940285	+	0	NA	Intergenic	Intergenic	8160	NM_001540	3315	Hs.520973	NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
4.40093	chr15	29386871	29387370	+	0	NA	intron (NM_005503, intron 7 of 13)	AluJb|SINE|Alu	173280	NM_001130414	321	Hs.618112	NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
1.99283-13	chr2	27319020	27319519	+	0	NA	intron (NM_006488, intron 3 of 7)	intron (NM_006488, intron 3 of 7)	9658	NM_000221	3795	Hs.567297	NM_000221	ENSG00000138030	KHK	-	ketohexokinase	protein-coding
0.958256-8	chr12	9483729	9484228	+	0	NA	Intergenic	Intergenic	-36082	NR_120479	101930452	Hs.734183	NR_120479	ENSG00000260423	LOC101930452	-	uncharacterized LOC101930452	ncRNA
1.94499-4	chr19	35557659	35558158	+	0	NA	TTS (NM_002151)	TTS (NM_002151)	26498	NM_002151	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
0.0656377-10	chr3	52017136	52017635	+	0	NA	promoter-TSS (NM_000666)	promoter-TSS (NM_000666)	85	NM_001198898	95	Hs.334707	NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
27.2584	chr1	201239765	201240264	+	0	NA	Intergenic	Intergenic	-12566	NM_001005337	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1	protein-coding
15.6384-4	chr6	22098645	22099144	+	0	NA	intron (NR_015410, intron 8 of 11)	L2a|LINE|L2	48528	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
37.6447-2	chr18	18747902	18748401	+	0	NA	Intergenic	Intergenic	-56339	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
5.31653-4	chr15	45694652	45695151	+	0	NA	promoter-TSS (NM_001321015)	promoter-TSS (NM_001321015)	382	NM_024063	79029	Hs.369657	NM_024063	ENSG00000171763	SPATA5L1	-	spermatogenesis associated 5 like 1	protein-coding
5.21434-5	chr16	85074829	85075328	+	0	NA	intron (NM_001286566, intron 1 of 11)	L2b|LINE|L2	13721	NM_001297766	9764	Hs.301658	NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
0.555173-21	chr1	111682412	111682911	+	0	NA	promoter-TSS (NM_006090)	promoter-TSS (NM_006090)	-124	NR_138484	10390	Hs.363572	NM_006090	ENSG00000134255	CEPT1	-	choline/ethanolamine phosphotransferase 1	protein-coding
4.15669-10	chr11	47448185	47448684	+	0	NA	promoter-TSS (NM_002804)	promoter-TSS (NM_002804)	-410	NM_002804	5702	Hs.250758	NM_002804	ENSG00000165916	PSMC3	TBP1	proteasome 26S subunit, ATPase 3	protein-coding
0.213631-16	chr6	99586278	99586777	+	0	NA	Intergenic	Intergenic	14042	NR_039672	100616347		NR_039672	ENSG00000265226	MIR548AI	-	microRNA 548ai	ncRNA
0.338583-32	chr3	190101976	190102475	+	0	NA	Intergenic	Intergenic	-3436	NM_006580	10686	Hs.251391	NM_006580	ENSG00000113946	CLDN16	HOMG3|PCLN1	claudin 16	protein-coding
8.44664-6	chr7	105830921	105831420	+	0	NA	Intergenic	Intergenic	-78077	NM_006754	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
0.366845-24	chr16	49316059	49316558	+	0	NA	promoter-TSS (NM_004352)	promoter-TSS (NM_004352)	-566	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
25.9688-2	chr4	57740334	57740833	+	0	NA	Intergenic	LTR9|LTR|ERV1	-33459	NM_005612	5978	Hs.307836	NM_005612	ENSG00000084093	REST	NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
1.53663-29	chr9	123387133	123387632	+	0	NA	intron (NM_001080497, intron 2 of 5)	PRIMA41-int|LTR|ERV1	-44934	NM_018249	55755	Hs.269560	NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
1.05684-10	chr2	115918853	115919352	+	0	NA	promoter-TSS (NR_036580)	promoter-TSS (NR_036580)	-182	NR_036580	389023	Hs.97540	NR_036580	ENSG00000235026	DPP10-AS1	-	DPP10 antisense RNA 1	ncRNA
4.02305-6	chr6	77454752	77455251	+	0	NA	Intergenic	SVA_F|Other|Other	-672606	NM_001282368	3617	Hs.590893	NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding
7.74691-15	chr3	158206899	158207398	+	0	NA	intron (NM_016625, intron 7 of 9)	intron (NM_016625, intron 7 of 9)	81707	NR_104147	100996447	Hs.369810	NR_104147	ENSG00000243150	LOC100996447	-	uncharacterized LOC100996447	ncRNA
1.39662-2	chr11	121163118	121163617	+	0	NA	promoter-TSS (NM_006918)	promoter-TSS (NM_006918)	-21	NM_006918	6309	Hs.287749	NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
18.8273-2	chr20	20450183	20450682	+	0	NA	intron (NM_020343, intron 37 of 39)	intron (NM_020343, intron 37 of 39)	101667	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
1.44481-15	chr1	180923040	180923539	+	0	NA	Intergenic	CpG	40976	NM_020950	57710	Hs.734816	NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
3.40084-2	chr4	88312238	88312737	+	0	NA	promoter-TSS (NM_016245)	promoter-TSS (NM_016245)	-32	NM_016245	51170	Hs.594923	NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
12.5964	chr4	100507452	100507951	+	0	NA	intron (NM_000253, intron 4 of 18)	intron (NM_000253, intron 4 of 18)	22466	NM_000253	4547	Hs.195799	NM_000253	ENSG00000138823	MTTP	ABL|MTP	microsomal triglyceride transfer protein	protein-coding
2.52588-4	chr3	145427496	145427995	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	451537	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
1.60522-13	chr11	110001313	110001812	+	0	NA	intron (NM_033390, intron 1 of 5)	intron (NM_033390, intron 1 of 5)	37475	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
3.91474-5	chr11	84254376	84254875	+	0	NA	intron (NM_001142699, intron 6 of 27)	L2b|LINE|L2	-226243	NM_001206769	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
20.8355-3	chr9	42206504	42207003	+	0	NA	Intergenic	L1PA13|LINE|L1	-161550	NM_001012421	441430	Hs.632663	NM_001012421	ENSG00000183148	ANKRD20A2	-	ankyrin repeat domain 20 family member A2	protein-coding
2.44888	chr3	125899530	125900029	+	0	NA	promoter-TSS (NM_012190)	promoter-TSS (NM_012190)	-134	NR_072979	10840	Hs.434435	NM_012190	ENSG00000144908	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family member L1	protein-coding
13.439-5	chr5	36202548	36203047	+	0	NA	intron (NM_001287341, intron 9 of 12)	MLT1J2|LTR|ERVL-MaLR	38696	NM_001287340	133686	Hs.81907	NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
1.31944-8	chr11	20409392	20409891	+	0	NA	exon (NM_005788, exon 2 of 16)	exon (NM_005788, exon 2 of 16)	565	NM_001145167	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
1.19758-9	chr13	21684774	21685273	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29630	NM_005870	10284	Hs.524899	NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
4.89455-10	chr8	142403966	142404465	+	0	NA	Intergenic	Intergenic	-26850	NM_005293	2843	Hs.152432	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
2.89883-7	chr1	199917993	199918492	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-78488	NM_003822	2494	Hs.33446	NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
5.21434	chr17	72188837	72189336	+	0	NA	Intergenic	Intergenic	-10709	NM_001035258	6169	Hs.380953	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
0.996329-25	chr11	82930106	82930605	+	0	NA	intron (NM_001300973, intron 5 of 11)	HERV30-int|LTR|ERV1	25574	NM_001300977	338699	Hs.503438	NM_182603	ENSG00000137494	ANKRD42	PPP1R79|SARP	ankyrin repeat domain 42	protein-coding
0.291884-37	chr7	30687552	30688051	+	0	NA	Intergenic	Intergenic	34340	NM_001202482	1395	Hs.546246	NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
4.37707-2	chr12	93771401	93771900	+	0	NA	promoter-TSS (NR_104005)	promoter-TSS (NR_104005)	-49	NM_019094	11163	Hs.506325	NM_019094	ENSG00000173598	NUDT4	DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix hydrolase 4	protein-coding
0.472076-16	chr1	22778053	22778944	+	0	NA	intron (NM_001330398, intron 1 of 15)	CpG	154	NM_001083621	9923	Hs.418966	NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
0.979971-19	chr11	61061481	61061980	+	0	NA	intron (NM_152718, intron 1 of 19)	GC_rich|Low_complexity|Low_complexity	1058	NM_152718	220001	Hs.60640	NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
0.168249-13	chr2	196996041	196996540	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	40046	NM_004226	9262	Hs.88297	NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
2.62013-23	chr16	68554457	68554956	+	0	NA	Intergenic	Intergenic	-18410	NM_001305206	146198	Hs.461074	NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
0.452752-14	chr14	96683315	96683814	+	0	NA	intron (NM_000623, intron 1 of 2)	intron (NM_000623, intron 1 of 2)	12429	NM_000623	624	Hs.654542	NM_000623	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
2.74905-5	chr3	157638572	157639071	+	0	NA	Intergenic	Intergenic	185131	NM_001163678	6474	Hs.55967	NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	short stature homeobox 2	protein-coding
7.16699-21	chr8	74002134	74002633	+	0	NA	intron (NM_153225, intron 1 of 4)	AluJb|SINE|Alu	3124	NM_153225	157869	Hs.439040	NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
0.123337-4	chr2	211325872	211326371	+	0	NA	intron (NR_110604, intron 4 of 5)	intron (NR_110604, intron 4 of 5)	15308	NM_001136574	10314	Hs.13351	NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like 1	protein-coding
7.23538	chr6	37072797	37073296	+	0	NA	Intergenic	Intergenic	-64876	NM_002648	5292	Hs.81170	NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
4.1005-2	chr2	132592725	132593224	+	0	NA	Intergenic	Intergenic	-33740	NM_214461	408029	Hs.145567	NM_214461		C2orf27B	-	chromosome 2 open reading frame 27B	protein-coding
0.0921731-34	chr7	158497463	158497962	+	0	NA	promoter-TSS (NM_001281932)	promoter-TSS (NM_001281932)	-190	NM_001281932	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
0.491485-4	chr1	204183050	204183549	+	0	NA	promoter-TSS (NM_198447)	promoter-TSS (NM_198447)	-79	NM_198447	127845	Hs.532401	NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b	golgi transport 1A	protein-coding
2.77366-8	chr8	59720468	59720967	+	0	NA	exon (NM_014729, exon 8 of 9)	exon (NM_014729, exon 8 of 9)	-148313	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
0.118872-62	chr1	182580548	182581047	+	0	NA	Intergenic	Intergenic	-3478	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
0.550241-28	chr2	9908436	9908935	+	0	NA	Intergenic	Intergenic	-74886	NM_001318977	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
0.788339-4	chr3	183542855	183543354	+	0	NA	exon (NM_024871, exon 1 of 3)	exon (NM_024871, exon 1 of 3)	289	NM_024871	79929	Hs.478465	NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
16.6154-3	chr4	16085433	16086222	+	0	NA	promoter-TSS (NM_001145847)	promoter-TSS (NM_001145847)	-204	NM_001145848	8842	Hs.614734	NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
0.296531-81	chr17	80171097	80171596	+	0	NA	promoter-TSS (NM_198082)	promoter-TSS (NM_198082)	-641	NM_001316321	284001	Hs.631724	NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
0.296531-69	chr16	85513856	85514355	+	0	NA	Intergenic	Intergenic	-130924	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
0.51587-26	chr6	151996816	151997315	+	0	NA	Intergenic	Intergenic	-14566	NM_001122742	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
8.06875-16	chr10	112477471	112477970	+	0	NA	intron (NM_001134363, intron 1 of 13)	MLT1K|LTR|ERVL-MaLR	73565	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
0.888424-43	chr6	119668499	119668998	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	2183	NM_005907	4121	Hs.102788	NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
5.39102-7	chr4	48803259	48803758	+	0	NA	Intergenic	Intergenic	-21192	NM_015030	285527	Hs.595553	NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
1.02923-16	chr16	11965011	11965510	+	0	NA	3' UTR (NM_001130007, exon 15 of 15)	3' UTR (NM_001130007, exon 15 of 15)	-19818	NM_015659	26156	Hs.401842	NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
17.8516	chrX	12974203	12974702	+	0	NA	Intergenic	Intergenic	-13033	NR_030727	349408	Hs.685035	NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
1.91114-3	chr6	7590139	7590638	+	0	NA	promoter-TSS (NM_152551)	promoter-TSS (NM_152551)	-44	NM_152551	154007	Hs.13366	NM_152551	ENSG00000168566	SNRNP48	C6orf151|dJ336K20B.1|dJ512B11.2	small nuclear ribonucleoprotein U11/U12 subunit 48	protein-coding
0.409586-18	chr13	114830497	114830996	+	0	NA	intron (NM_001320821, intron 2 of 25)	intron (NM_001320821, intron 2 of 25)	12708	NM_001320822	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
0.0656377-9	chr16	23071931	23072430	+	0	NA	TTS (NM_020718)	TTS (NM_020718)	88411	NM_020718	57478	Hs.183817	NM_020718	ENSG00000103404	USP31	-	ubiquitin specific peptidase 31	protein-coding
6.36388-6	chr9	100317372	100317871	+	0	NA	intron (NM_003275, intron 4 of 9)	intron (NM_003275, intron 4 of 9)	53700	NM_003275	7111	Hs.404289	NM_003275	ENSG00000136842	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
3.99027	chr2	153574845	153575344	+	0	NA	5' UTR (NM_152522, exon 1 of 4)	intron (NR_024526, intron 1 of 3)	687	NM_152522	151188	Hs.643580	NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
8.50781-5	chr8	92316762	92317261	+	0	NA	intron (NM_001282356, intron 5 of 19)	intron (NM_001282356, intron 5 of 19)	55495	NM_134266	115111	Hs.354013	NM_052832	ENSG00000147606	SLC26A7	SUT2	solute carrier family 26 member 7	protein-coding
10.9205-5	chr2	23464583	23465082	+	0	NA	Intergenic	Intergenic	-143466	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
0.357404-9	chr1	76540119	76540618	+	0	NA	promoter-TSS (NM_001160011)	promoter-TSS (NM_001160011)	-21	NM_152996	256435	Hs.337040	NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
2.98432-7	chr16	70086363	70086862	+	0	NA	intron (NR_003610, intron 1 of 25)	SVA_E|Other|Other	13239	NR_003610	283970	Hs.513695	NM_199134	ENSG00000196696	PDXDC2P	NPIP|PDXDC2	pyridoxal dependent decarboxylase domain containing 2, pseudogene	pseudo
0.0833099-25	chr6	139013212	139013711	+	0	NA	intron (NR_033896, intron 1 of 3)	intron (NR_033896, intron 1 of 3)	656	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	ncRNA
6.65546-8	chr10	51623491	51623990	+	0	NA	promoter-TSS (NM_006327)	promoter-TSS (NM_006327)	-354	NM_006327	100287932	Hs.524308	NM_006327	ENSG00000265354	TIMM23	TIM23	translocase of inner mitochondrial membrane 23	protein-coding
0.070049-51	chr12	49658563	49659062	+	0	NA	promoter-TSS (NM_032704)	promoter-TSS (NM_032704)	30	NM_032704	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
1.70696-5	chr12	77443512	77444011	+	0	NA	intron (NM_203394, intron 4 of 12)	intron (NM_203394, intron 4 of 12)	15599	NM_203394	144455	Hs.416375	NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
15.7675-11	chr7	23840323	23840822	+	0	NA	intron (NM_001260505, intron 22 of 22)	L1ME1|LINE|L1	90627	NM_032944	56164	Hs.309767	NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
21.9997	chr2	55381759	55382258	+	0	NA	Intergenic	Intergenic	-17041	NM_001321904	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
1.28427-3	chr10	99912880	99913379	+	0	NA	intron (NM_001256620, intron 1 of 8)	SVA_C|Other|Other	18748	NM_001256619	27291	Hs.419800	NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
26.9465-2	chr18	74332939	74333748	+	0	NA	intron (NR_120419, intron 1 of 1)	intron (NR_120419, intron 1 of 1)	1609	NR_120419	400660	Hs.131718	NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
0.560111-13	chr3	176915034	176915533	+	0	NA	promoter-TSS (NM_024665)	promoter-TSS (NM_024665)	-169	NM_001321194	79718	Hs.714201	NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	transducin beta like 1 X-linked receptor 1	protein-coding
0.746879-5	chr12	118421847	118422346	+	0	NA	Intergenic	Intergenic	-16068	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
10.6148-3	chr5	10623370	10623869	+	0	NA	intron (NM_001164440, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	59184	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
6.0206-12	chrX	40027018	40027517	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	9315	NM_001123383	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
10.9205	chr14	106045424	106045923	+	0	NA	Intergenic	Intergenic	-41780	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
1.36677-12	chr2	238364755	238365254	+	0	NA	Intergenic	Intergenic	-30049	NM_001281474	79083	Hs.102406	NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
0.123337-9	chr20	45242301	45242800	+	0	NA	intron (NM_001193340, intron 2 of 12)	MIRc|SINE|MIR	37550	NM_022829	64849	Hs.655498	NM_022829	ENSG00000158296	SLC13A3	NADC3|SDCT2	solute carrier family 13 member 3	protein-coding
9.62574-19	chr6	142508329	142508828	+	0	NA	intron (NM_016485, intron 4 of 7)	intron (NM_016485, intron 4 of 7)	40279	NM_001286371	51534	Hs.431367	NM_016485	ENSG00000009844	VTA1	C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
0.070049-20	chr22	17565498	17565997	+	0	NA	promoter-TSS (NM_014339)	promoter-TSS (NM_014339)	-102	NM_001289905	23765	Hs.48353	NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
3.37242-20	chr4	146101040	146101539	+	0	NA	promoter-TSS (NM_001102653)	promoter-TSS (NM_001102653)	-457	NM_001102653	54726	Hs.270851	NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
0.310503-3	chr1	222720216	222720715	+	0	NA	intron (NM_024746, intron 1 of 8)	intron (NM_024746, intron 1 of 8)	979	NM_024746	79802	Hs.665660	NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
1.63676-3	chr2	186574166	186574665	+	0	NA	Intergenic	Intergenic	29031	NR_110216	101927196	Hs.244783	NR_110214	ENSG00000226747	LOC101927196	-	uncharacterized LOC101927196	ncRNA
2.53366-9	chr1	149379091	149379858	+	0	NA	Intergenic	CpG	10180	NR_027484	100132417	Hs.77424	NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc fragment of IgG receptor Ic, pseudogene	pseudo
1.36083-12	chr5	102595225	102595724	+	0	NA	5' UTR (NM_001316968, exon 1 of 3)	5' UTR (NM_001316968, exon 1 of 3)	416	NM_001316968	90355	Hs.482976	NM_033211	ENSG00000181751	C5orf30	-	chromosome 5 open reading frame 30	protein-coding
0.34328-28	chr2	97593518	97594363	+	0	NA	intron (NM_001122646, intron 9 of 16)	intron (NM_001122646, intron 9 of 16)	9097	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
16.1618-7	chr14	19641259	19641758	+	0	NA	Intergenic	Intergenic	-8524	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
4.07823-3	chr11	119242372	119242871	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-7729	NM_171997	9099	Hs.524085	NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
0.639892-2	chr4	84031245	84031744	+	0	NA	promoter-TSS (NM_001130716)	promoter-TSS (NM_001130716)	-482	NM_001130716	51316	Hs.546392	NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta specific 8	protein-coding
0.0833099-45	chr2	60695654	60696153	+	0	NA	exon (NM_018014, exon 3 of 5)	exon (NM_018014, exon 3 of 5)	-77393	NR_132992	106660609	Hs.565545	NR_132991	ENSG00000223929	MIR4432HG	-	MIR4432 host gene	ncRNA
7.64472-6	chr8	61822640	61823139	+	0	NA	Intergenic	CpG	57418	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
6.00326-8	chr9	15407225	15407724	+	0	NA	Intergenic	SVA_F|Other|Other	-15308	NM_001039697	6619	Hs.546299	NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
6.59556-2	chr3	11138475	11138974	+	0	NA	Intergenic	Intergenic	-40055	NM_001098213	3269	Hs.1570	NM_000861	ENSG00000196639	HRH1	H1-R|H1R|HH1R|hisH1	histamine receptor H1	protein-coding
6.92504-19	chr16	18967161	18967660	+	0	NA	Intergenic	LTR19C|LTR|ERV1	-27846	NM_001324268	79905	Hs.187377	NM_024847	ENSG00000170537	TMC7	-	transmembrane channel like 7	protein-coding
1.42065-21	chr11	5247499	5247998	+	0	NA	intron (NM_000518, intron 2 of 2)	intron (NM_000518, intron 2 of 2)	553	NM_000518	3043	Hs.523443	NM_000518	ENSG00000244734	HBB	CD113t-C|beta-globin	hemoglobin subunit beta	protein-coding
2.08309-5	chr15	102313810	102314309	+	0	NA	Intergenic	Intergenic	-26986	NM_001321551	100128108	Hs.104864	NM_001321551		LOC100128108	-	putative ubiquitin-conjugating enzyme E2Q2-like protein	protein-coding
2.43364-16	chr6	125632141	125632640	+	0	NA	Intergenic	Intergenic	-9108	NM_016063	51020	Hs.32826	NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
1.71985-3	chr1	116100314	116100813	+	0	NA	Intergenic	Intergenic	-84011	NM_138959	81839	Hs.515130	NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
1.01275-2	chr2	222438140	222438639	+	0	NA	intron (NM_001304536, intron 1 of 18)	CpG-16010	533	NM_001304536	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
1.17475-15	chr10	76970086	76970585	+	0	NA	5' UTR (NM_003375, exon 2 of 11)	5' UTR (NM_003375, exon 2 of 11)	423	NM_001324087	7417	Hs.355927	NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
1.26098-30	chr10	35097691	35098190	+	0	NA	intron (NM_001184785, intron 1 of 24)	intron (NM_001184785, intron 1 of 24)	6313	NM_001184789	56288	Hs.131489	NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
0.660068-4	chr16	1470620	1471119	+	0	NA	promoter-TSS (NM_001272051)	promoter-TSS (NM_001272051)	-68	NM_001272051	283951	Hs.58373	NM_001010878	ENSG00000174109	C16orf91	CCSMST1|URLC5|gs103	chromosome 16 open reading frame 91	protein-coding
4.01209-9	chr15	67235929	67236428	+	0	NA	intron (NR_135687, intron 1 of 2)	intron (NR_135687, intron 1 of 2)	12675	NR_135687	102723481	Hs.512978	NR_135687	ENSG00000259289	LOC102723481	-	uncharacterized LOC102723481	ncRNA
0.390538-3	chr6	107810348	107810847	+	0	NA	promoter-TSS (NM_018013)	promoter-TSS (NM_018013)	-720	NM_018013	55084	Hs.445244	NM_018013	ENSG00000112320	SOBP	JXC1|MRAMS	sine oculis binding protein homolog	protein-coding
0.624821-25	chr18	57126520	57127019	+	0	NA	intron (NM_133459, intron 5 of 10)	intron (NM_133459, intron 5 of 10)	-100261	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
0.746879-13	chr7	4721504	4722003	+	0	NA	promoter-TSS (NM_001037165)	promoter-TSS (NM_001037165)	-177	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
8.26814-21	chr16	21523006	21523505	+	0	NA	Intergenic	Intergenic	-5799	NR_037451	100500917		NR_037451	ENSG00000265462	MIR3680-1	MIR3680|hsa-mir-3680-1	microRNA 3680-1	ncRNA
11.7393-2	chr12	28178959	28179458	+	0	NA	Intergenic	MIRc|SINE|MIR	-54292	NM_002820	5744	Hs.591159	NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
0.51587-14	chr13	94975084	94975583	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	-135088	NR_046535	100873972	Hs.670344	NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
0.952845-14	chr9	140196514	140197283	+	0	NA	promoter-TSS (NM_001004354)	promoter-TSS (NM_001004354)	-195	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
0.195421-15	chr1	84092242	84092741	+	0	NA	intron (NR_119375, intron 2 of 2)	intron (NR_119375, intron 2 of 2)	233738	NR_119374	101927560	Hs.559661	NR_119374	ENSG00000233008	LOC101927560	-	uncharacterized LOC101927560	ncRNA
0.700704	chr1	65719691	65720190	+	0	NA	Intergenic	Intergenic	-10437	NM_001256865	9829	Hs.647643	NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
4.9485-7	chr22	47165039	47165538	+	0	NA	intron (NR_104292, intron 2 of 13)	L2b|LINE|L2	-4536	NM_001284305	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
5.0307-4	chr2	187338456	187338955	+	0	NA	Intergenic	SVA_D|Other|Other	-12180	NM_018471	55854	Hs.741180	NM_018471	ENSG00000065548	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
20.7727	chr20	20529766	20530265	+	0	NA	intron (NM_020343, intron 23 of 39)	intron (NM_020343, intron 23 of 39)	163251	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding
3.58526-8	chr8	145026718	145027217	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	1121	NM_201379	5339	Hs.434248	NM_000445	ENSG00000178209	PLEC	EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
0.996329-3	chr1	27676256	27676755	+	0	NA	exon (NM_032872, exon 9 of 15)	exon (NM_032872, exon 9 of 15)	8022	NM_001193308	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
0.788339-9	chr4	40926467	40926966	+	0	NA	intron (NM_001166050, intron 10 of 17)	MLT1G1|LTR|ERVL-MaLR	-67507	NM_001166053	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
11.4146-2	chr1	43423786	43424285	+	0	NA	promoter-TSS (NR_033967)	promoter-TSS (NR_033967)	-685	NR_033967	440584	Hs.260928	NR_033967	ENSG00000227533	SLC2A1-AS1	-	SLC2A1 antisense RNA 1	ncRNA
1.19758-11	chr8	128978589	128979088	+	0	NA	intron (NR_003367, intron 3 of 8)	MER3|DNA|hAT-Charlie	5959	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
0.163737-20	chr11	67981091	67981590	+	0	NA	promoter-TSS (NM_001300907)	promoter-TSS (NM_001300907)	-101	NM_001300908	51111	Hs.632120	NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|SUV420H1	lysine methyltransferase 5B	protein-coding
4.97573-5	chr12	57976994	57977493	+	0	NA	intron (NM_004984, intron 28 of 28)	intron (NM_004984, intron 28 of 28)	-7699	NM_001146260	79837	Hs.745011	NM_024779	ENSG00000166908	PIP4K2C	PIP5K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein-coding
0.624821-3	chr15	91497813	91498312	+	0	NA	promoter-TSS (NM_001017919)	promoter-TSS (NM_001017919)	-44	NM_001017919	91433	Hs.655895	NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
3.32547-10	chr6	90529248	90529747	+	0	NA	promoter-TSS (NM_014611)	promoter-TSS (NM_014611)	16	NM_014611	23195	Hs.529948	NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
3.45823-4	chr2	193436252	193436751	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-178070	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
2.58848-8	chr7	23508665	23509164	+	0	NA	intron (NM_006547, intron 1 of 14)	CpG	1081	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
6.17983-12	chr16	87756785	87757284	+	0	NA	intron (NM_017566, intron 7 of 11)	intron (NM_017566, intron 7 of 11)	42564	NM_001184854	54758	Hs.123450	NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
7.93174-11	chr5	18393509	18394008	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	586375	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
1.20904	chr12	7245055	7245554	+	0	NA	promoter-TSS (NM_001733)	promoter-TSS (NM_001733)	-261	NM_001733	715	Hs.524224	NM_001733	ENSG00000159403	C1R	EDSPD1	complement C1r	protein-coding
3.63512-27	chr11	10326138	10326637	+	0	NA	promoter-TSS (NM_001124)	promoter-TSS (NM_001124)	-140	NM_001124	133	Hs.441047	NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
81.4267	chr12	128207808	128208307	+	0	NA	Intergenic	Intergenic	-67924	NR_134995	105370068	Hs.524845	NR_134995		LOC105370068	-	uncharacterized LOC105370068	ncRNA
0.872467-4	chr4	119274407	119274906	+	0	NA	promoter-TSS (NM_003619)	promoter-TSS (NM_003619)	-734	NM_003619	8492	Hs.445857	NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine 12	protein-coding
16.8194-3	chr3	66859195	66859694	+	0	NA	Intergenic	Intergenic	-70684	NR_135533	105377143	Hs.553944	NR_135533		LOC105377143	-	uncharacterized LOC105377143	ncRNA
15.8838-2	chr18	44340894	44341728	+	0	NA	Intergenic	Intergenic	-4179	NM_001307987	29906	Hs.465025	NM_013305	ENSG00000101638	ST8SIA5	SIAT8-E|SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
0.496351-26	chr2	20387035	20387534	+	0	NA	Intergenic	Intergenic	37643	NM_002997	6382	Hs.224607	NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
5.08638-2	chr22	24308677	24309176	+	0	NA	promoter-TSS (NM_001084393)	promoter-TSS (NM_001084393)	-100	NM_001084393	100037417	Hs.744172	NM_001084393	ENSG00000099974	DDTL	KB-226F1.2	D-dopachrome tautomerase-like	protein-coding
1.15771-13	chr7	151000438	151000937	+	0	NA	Intergenic	CpG	-26456	NM_003078	6604	Hs.647067	NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
9.1364-8	chr14	60618350	60618849	+	0	NA	intron (NM_001322282, intron 3 of 5)	intron (NM_001322282, intron 3 of 5)	13612	NM_001322281	51635	Hs.59719	NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
2.26945-7	chr11	94800111	94800860	+	0	NA	exon (NM_032102, exon 1 of 2)	exon (NM_032102, exon 1 of 2)	444	NM_032102	10929	Hs.476680	NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding
4.86782-8	chr14	66256081	66256580	+	0	NA	Intergenic	Intergenic	318510	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
0.101054-38	chr6	117799500	117799999	+	0	NA	Intergenic	Intergenic	-4018	NM_173674	285761	Hs.658304	NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
1.59894-26	chr19	41168677	41169176	+	0	NA	Intergenic	CpG	27143	NM_001289980	9253	Hs.326953	NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like, endocytic adaptor protein	protein-coding
0.409586-30	chr1	165227171	165227670	+	0	NA	intron (NM_177398, intron 3 of 8)	intron (NM_177398, intron 3 of 8)	98058	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
0.132283-43	chr15	78441457	78441956	+	0	NA	promoter-TSS (NM_005530)	promoter-TSS (NM_005530)	-13	NM_005530	3419	Hs.591110	NM_005530	ENSG00000166411	IDH3A	-	isocitrate dehydrogenase 3 (NAD(+)) alpha	protein-coding
6.67562-4	chr10	124767258	124767757	+	0	NA	promoter-TSS (NM_001609)	promoter-TSS (NM_001609)	696	NM_001271840	64376	Hs.501289	NM_001271840	ENSG00000095574	IKZF5	PEGASUS|ZNFN1A5	IKAROS family zinc finger 5	protein-coding
0.952845-21	chr1	65210757	65211256	+	0	NA	exon (NM_018211, exon 1 of 12)	exon (NM_018211, exon 1 of 12)	228	NM_018211	55225	Hs.591443	NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
3.14258-3	chr7	130005369	130005868	+	0	NA	non-coding (NR_133928, exon 2 of 2)	non-coding (NR_133928, exon 2 of 2)	1350	NR_133928	105375504	Hs.436058	NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
17.6195-8	chr13	40764844	40765343	+	0	NA	Intergenic	Intergenic	9147	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
16.6154-2	chr1	15678802	15679301	+	0	NA	intron (NM_052929, intron 18 of 30)	intron (NM_052929, intron 18 of 30)	-57340	NM_024329	79180	Hs.465374	NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
0.381045-11	chr15	40226160	40226659	+	0	NA	promoter-TSS (NM_001013703)	promoter-TSS (NM_001013703)	84	NM_001013703	440275	Hs.656673	NM_001013703	ENSG00000128829	EIF2AK4	GCN2|PVOD2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
1.44481	chr1	236134966	236135465	+	0	NA	Intergenic	Intergenic	-88207	NR_102436	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
9.78811-6	chr16	81812612	81813111	+	0	NA	promoter-TSS (NM_002661)	promoter-TSS (NM_002661)	-2	NM_002661	5336	Hs.372303	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
11.6749-2	chr8	144896930	144897635	+	0	NA	intron (NM_015356, intron 1 of 35)	intron (NM_015356, intron 1 of 35)	267	NM_182706	23513	Hs.436329	NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul	scribbled planar cell polarity protein	protein-coding
0.540393-26	chr4	183499546	183500045	+	0	NA	intron (NM_001080477, intron 3 of 27)	intron (NM_001080477, intron 3 of 27)	335211	NM_001080477	55714	Hs.130438	NM_001080477	ENSG00000218336	TENM3	MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3	teneurin transmembrane protein 3	protein-coding
1.26098-29	chr2	20252280	20252779	+	0	NA	promoter-TSS (NM_014713)	promoter-TSS (NM_014713)	-740	NM_014713	9741	Hs.467807	NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
1.40862-6	chrX	115014809	115015308	+	0	NA	intron (NR_132337, intron 1 of 1)	intron (NR_132337, intron 1 of 1)	70386	NR_132337	642776	Hs.634316	NR_130730	ENSG00000235244	DANT2	-	DXZ4 associated non-coding transcript 2, distal	ncRNA
4.17937-2	chr2	50201087	50201586	+	0	NA	promoter-TSS (NM_001320157)	promoter-TSS (NM_001320157)	5	NM_001320157	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
0.209071-18	chr12	46765765	46766264	+	0	NA	intron (NM_018976, intron 1 of 15)	CpG	631	NM_001307936	54407	Hs.221847	NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
2.04815-20	chr13	28107352	28107851	+	0	NA	Intergenic	Intergenic	-82862	NM_001166263	219402	Hs.534582	NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
1.41463-14	chr4	114717912	114718411	+	0	NA	Intergenic	SVA_B|Other|Other	-35078	NM_001321578	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
10.8302	chr18	46259059	46259558	+	0	NA	intron (NM_014772, intron 7 of 11)	intron (NM_014772, intron 7 of 11)	62337	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
0.486625-8	chr6	167040756	167041255	+	0	NA	promoter-TSS (NM_021135)	promoter-TSS (NM_021135)	-240	NM_021135	6196	Hs.655277	NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
11.6622	chr2	59476520	59477019	+	0	NA	intron (NR_110219, intron 1 of 2)	intron (NR_110219, intron 1 of 2)	31926	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
28.4466	chr7	149576614	149577113	+	0	NA	non-coding (NR_110612, exon 5 of 5)	non-coding (NR_110612, exon 5 of 5)	-5912	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
11.3549	chr7	131223428	131223927	+	0	NA	intron (NM_001018111, intron 1 of 8)	intron (NM_001018111, intron 1 of 8)	17699	NM_001018111	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
0.296531-112	chr9_gl000199_random	31192	31691	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
9.66576-11	chr1	33463669	33464168	+	0	NA	Intergenic	Intergenic	-33504	NM_001300826	127544	Hs.591504	NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
1.05684-3	chr5	133519774	133520273	+	0	NA	Intergenic	Intergenic	-7299	NM_170679	6500	Hs.171626	NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
3.39135-19	chr3	194593207	194593706	+	0	NA	Intergenic	Intergenic	164306	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LINC01968	-	long intergenic non-protein coding RNA 1968	ncRNA
7.21246-10	chr6	78140456	78140955	+	0	NA	Intergenic	Intergenic	33034	NM_000863	3351	Hs.123016	NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
0.540393-52	chr3	153838813	153839312	+	0	NA	promoter-TSS (NR_037901)	promoter-TSS (NR_037901)	-63	NR_037901	100507524	Hs.370221	NR_037901	ENSG00000243069	ARHGEF26-AS1	-	ARHGEF26 antisense RNA 1	ncRNA
1.70053-14	chr5	115696934	115697433	+	0	NA	Intergenic	CpG	13084	NR_104675	101927190	Hs.639849	NR_104675		LOC101927190	-	uncharacterized LOC101927190	ncRNA
0.680339-29	chr8	6735300	6735799	+	0	NA	promoter-TSS (NM_005218)	promoter-TSS (NM_005218)	-20	NM_005218	1672	Hs.32949	NM_005218	ENSG00000164825	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin beta 1	protein-coding
8.76148-4	chr2	121605282	121605781	+	0	NA	intron (NM_005270, intron 1 of 12)	intron (NM_005270, intron 1 of 12)	50664	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
16.1618-2	chrX	9896070	9896569	+	0	NA	intron (NM_001320663, intron 1 of 5)	intron (NM_001320663, intron 1 of 5)	15907	NM_001320664	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
0.273344-21	chr5	126853171	126853670	+	0	NA	5' UTR (NM_130809, exon 1 of 9)	5' UTR (NM_130809, exon 1 of 9)	119	NM_001286808	133619	Hs.483259	NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
8.01343-17	chr19	41102759	41103258	+	0	NA	promoter-TSS (NM_001042544)	promoter-TSS (NM_001042544)	-133	NM_001042544	8425	Hs.466766	NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
0.772745	chr19	39685734	39686233	+	0	NA	Intergenic	Intergenic	-1621	NM_001001414	342897	Hs.726934	NM_001001414	ENSG00000188505	NCCRP1	FBXO50|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding
6.81937-3	chr1	11866136	11866635	+	0	NA	promoter-TSS (NM_005957)	promoter-TSS (NM_005957)	-225	NM_005957	4524	Hs.214142	NM_005957	ENSG00000177000	MTHFR	-	methylenetetrahydrofolate reductase	protein-coding
16.4207	chr6	141691833	141692332	+	0	NA	Intergenic	Intergenic	687131	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
1.77832	chr6	90062244	90062743	+	0	NA	5' UTR (NM_016021, exon 1 of 8)	5' UTR (NM_016021, exon 1 of 8)	126	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
23.3161	chr2	213002901	213003400	+	0	NA	intron (NM_005235, intron 1 of 27)	MSTC|LTR|ERVL-MaLR	287934	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
15.4516-5	chr12	16225280	16225779	+	0	NA	Intergenic	Intergenic	161423	NM_001300779	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
4.77556-11	chr2	39005360	39005859	+	0	NA	intron (NM_024775, intron 1 of 2)	intron (NM_024775, intron 1 of 2)	282	NM_024775	79833	Hs.143818	NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
5.24329-5	chr11	12132294	12132793	+	0	NA	intron (NR_144418, intron 1 of 25)	CpG	420	NM_001346295	9645	Hs.501928	NM_014632	ENSG00000133816	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
0.736576-17	chr17_gl000205_random	27356	27855	+	0	NA	Intergenic	Intergenic	-89018	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
0.101054-18	chr4	72032706	72033205	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-20048	NM_001098484	8671	Hs.5462	NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
5.33132-5	chr12	56987890	56988389	+	0	NA	3' UTR (NM_002898, exon 14 of 14)	3' UTR (NM_002898, exon 14 of 14)	35976	NM_001300905	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
24.9894	chr1	160335043	160335542	+	0	NA	Intergenic	Intergenic	-1569	NM_005598	4807	Hs.30956	NM_005598	ENSG00000171786	NHLH1	HEN1|NSCL|NSCL1|bHLHa35	nescient helix-loop-helix 1	protein-coding
0.222764-6	chr2	11623293	11623792	+	0	NA	Intergenic	Intergenic	-17239	NM_001278278	1876	Hs.603093	NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
4.65974-19	chr5	24005419	24005918	+	0	NA	intron (NR_131245, intron 4 of 4)	intron (NR_131245, intron 4 of 4)	54211	NR_131245	439936	Hs.638078	NR_131245	ENSG00000248874	C5orf17	-	chromosome 5 open reading frame 17	ncRNA
0.472076-10	chr3	197476890	197477389	+	0	NA	promoter-TSS (NM_001145642)	promoter-TSS (NM_001145642)	-122	NR_027840	84248	Hs.277533	NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
1.17475-16	chr1	160231543	160232042	+	0	NA	intron (NM_015726, intron 1 of 13)	CpG	485	NR_028106	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	GAN2|H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
9.46922-2	chr16	52133184	52133683	+	0	NA	TTS (NR_104655)	TTS (NR_104655)	14240	NR_104655	102467079	Hs.98466	NR_104655	ENSG00000261749	LOC102467079	-	uncharacterized LOC102467079	ncRNA
12.7246-7	chr5	22187082	22187581	+	0	NA	intron (NM_001317227, intron 1 of 11)	intron (NM_001317227, intron 1 of 11)	25547	NM_001317227	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
3.10691-4	chr12	44151990	44152489	+	0	NA	promoter-TSS (NM_001114182)	promoter-TSS (NM_001114182)	322	NM_001098615	83448	Hs.445814	NM_031292	ENSG00000129317	PUS7L	-	pseudouridylate synthase 7 like	protein-coding
2.1254-19	chr4	39045525	39046024	+	0	NA	promoter-TSS (NM_001171654)	promoter-TSS (NM_001171654)	-677	NM_001171654	51088	Hs.272251	NM_015990	ENSG00000109790	KLHL5	-	kelch like family member 5	protein-coding
14.318	chr11	8632193	8632692	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-16606	NM_001289059	65975	Hs.501833	NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
0.291884-10	chr5	133984141	133984640	+	0	NA	promoter-TSS (NM_021982)	promoter-TSS (NM_021982)	-85	NM_021982	10802	Hs.595540	NM_021982	ENSG00000113615	SEC24A	-	SEC24 homolog A, COPII coat complex component	protein-coding
0.347983-16	chr1	10724258	10724757	+	0	NA	intron (NM_017766, intron 5 of 15)	intron (NM_017766, intron 5 of 15)	132226	NM_017766	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
6.38272-12	chr11	92563851	92564350	+	0	NA	intron (NM_001008781, intron 12 of 24)	L2a|LINE|L2	84694	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
3.01899-3	chr4	2420458	2420957	+	0	NA	promoter-TSS (NM_001172656)	promoter-TSS (NM_001172656)	35	NM_001193282	402160	Hs.443116	NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
1.62412-10	chr1	161391631	161392130	+	0	NA	Intergenic	Intergenic	-54207	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
8.32683-2	chr14	95402778	95403277	+	0	NA	Intergenic	Intergenic	166048	NR_144432	108868751		NR_144432		DIGIT	-	divergent to GSC, Induced by TGF-b family signaling	ncRNA
0.419142-16	chr12	132653962	132654461	+	0	NA	Intergenic	Intergenic	25239	NM_024078	79050	Hs.558536	NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
3.43902-4	chr4	140503177	140503676	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-25503	NM_001306199	80854	Hs.480792	NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing lysine methyltransferase 7	protein-coding
10.4769-8	chr6	71836164	71836663	+	0	NA	Intergenic	L2c|LINE|L2	-161732	NM_024576	79627	Hs.648434	NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
0.0130484-7	chr11	114954010	114954509	+	0	NA	Intergenic	Intergenic	-250037	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
0.376307-24	chr4	18595078	18595577	+	0	NA	Intergenic	Intergenic	-571829	NR_136669	254251	Hs.446201	NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
14.0561	chr22	39184353	39184852	+	0	NA	intron (NM_005740, intron 1 of 3)	intron (NM_005740, intron 1 of 3)	5559	NM_005740	10126	Hs.632766	NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
8.18156-3	chr2	219751270	219751769	+	0	NA	intron (NM_025216, intron 2 of 3)	intron (NM_025216, intron 2 of 3)	6264	NM_025216	80326	Hs.121540	NM_025216	ENSG00000135925	WNT10A	OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
8.35647-4	chr3	31055371	31055870	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-119467	NM_207359	339896	Hs.657052	NM_207359	ENSG00000144644	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase like 1	protein-coding
0.366845-22	chr19	4815543	4816042	+	0	NA	TTS (NM_182919)	TTS (NM_182919)	15962	NM_182919	148022	Hs.29344	NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	toll like receptor adaptor molecule 1	protein-coding
0.32452-17	chr15	87070144	87070643	+	0	NA	intron (NM_152336, intron 19 of 24)	intron (NM_152336, intron 19 of 24)	-210194	NR_046012	727915	Hs.451281	NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
15.6703-6	chr5	572090	572589	+	0	NA	Intergenic	Intergenic	-36342	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
0.0130484-45	chr2	64627801	64628300	+	0	NA	Intergenic	Intergenic	-53277	NM_014181	29094	Hs.372208	NM_014181	ENSG00000119862	LGALSL	GRP|HSPC159	galectin like	protein-coding
7.9588-3	chr11	117843203	117843702	+	0	NA	Intergenic	L2a|LINE|L2	-13654	NM_001558	3587	Hs.504035	NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
3.79864-5	chr1	2140359	2140858	+	0	NA	intron (NM_001282670, intron 2 of 7)	intron (NM_001282670, intron 2 of 7)	-1436	NM_001146310	199990	Hs.107101	NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	Fanconi anemia core complex associated protein 20	protein-coding
12.5964-6	chr22	24639232	24639731	+	0	NA	intron (NM_004121, intron 1 of 11)	intron (NM_004121, intron 1 of 11)	1629	NM_001099782	2687	Hs.437156	NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
0.218195-16	chr1	11399889	11400388	+	0	NA	Intergenic	Intergenic	66883	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
0.525663-4	chr2	42721322	42721821	+	0	NA	promoter-TSS (NM_133329)	promoter-TSS (NM_133329)	-138	NM_001282755	57504	Hs.435413	NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
2.29148-27	chr1	16558401	16558900	+	0	NA	exon (NM_030907, exon 5 of 5)	exon (NM_030907, exon 5 of 5)	5009	NM_030907	79363	Hs.546430	NM_030907	ENSG00000132881	RSG1	C1orf89	REM2 and RAB like small GTPase 1	protein-coding
0.123337-15	chr14	21689297	21689796	+	0	NA	intron (NM_004500, intron 5 of 8)	MER3|DNA|hAT-Charlie	-14487	NR_038971	283624	Hs.525210	NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
0.385789-41	chr11	34018478	34018977	+	0	NA	Intergenic	Intergenic	-54503	NM_203364	4076	Hs.471818	NM_005898	ENSG00000135387	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
0.614803-5	chr15	49462114	49462822	+	0	NA	5' UTR (NM_001289031, exon 1 of 10)	5' UTR (NM_001289031, exon 1 of 10)	255	NM_001289030	2585	Hs.122006	NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
3.9794-9	chr14	70078128	70078627	+	0	NA	promoter-TSS (NM_014734)	promoter-TSS (NM_014734)	67	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
1.40261-6	chr12	12714384	12714883	+	0	NA	intron (NM_030640, intron 1 of 6)	CpG	815	NM_030640	80824	Hs.536535	NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
0.75204-6	chr12	109710963	109711462	+	0	NA	Intergenic	Intergenic	35813	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
1.42065-24	chr13	92371224	92371723	+	0	NA	intron (NM_004466, intron 3 of 7)	intron (NM_004466, intron 3 of 7)	320600	NM_004466	2262	Hs.655675	NM_004466	ENSG00000179399	GPC5	-	glypican 5	protein-coding
4.86782-4	chr1	220444906	220445405	+	0	NA	intron (NM_012414, intron 1 of 34)	intron (NM_012414, intron 1 of 34)	688	NM_012414	25782	Hs.654849	NM_012414	ENSG00000118873	RAB3GAP2	RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
0.0130484-22	chr7	64712264	64712763	+	0	NA	Intergenic	CpG	-126199	NM_001287534	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
2.07608-13	chr14	35667323	35667822	+	0	NA	intron (NM_001256681, intron 3 of 5)	intron (NM_001256681, intron 3 of 5)	75814	NM_001256680	9692	Hs.458487	NM_014672	ENSG00000100890	KIAA0391	MRPP3|PRORP	KIAA0391	protein-coding
0.409586-9	chr5	134773782	134774281	+	0	NA	Intergenic	Intergenic	9007	NM_130848	140947	Hs.152477	NM_130848	ENSG00000251380	DCANP1	C5orf20|DCNP1	dendritic cell associated nuclear protein	protein-coding
3.13364-7	chr9	96011874	96012373	+	0	NA	intron (NM_001282394, intron 7 of 29)	intron (NM_001282394, intron 7 of 29)	64911	NM_006648	65268	Hs.654856	NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
7.25842-5	chr10	120785242	120785741	+	0	NA	Intergenic	Intergenic	-3737	NM_199461	340719	Hs.591918	NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
0.555173-6	chr5	125879774	125880273	+	0	NA	3' UTR (NM_001201377, exon 18 of 18)	3' UTR (NM_001201377, exon 18 of 18)	51059	NM_001202404	501	Hs.483239	NM_001182	ENSG00000164904	ALDH7A1	ATQ1|EPD|PDE	aldehyde dehydrogenase 7 family member A1	protein-coding
5.28708-5	chr6	119130091	119130590	+	0	NA	Intergenic	Intergenic	26469	NR_037662	100287632	Hs.334026	NR_037662		LOC100287632	-	selenoprotein K pseudogene	pseudo
0.856568-7	chr19	4390968	4391467	+	0	NA	intron (NM_003025, intron 1 of 9)	intron (NM_003025, intron 1 of 9)	9198	NM_001199944	6455	Hs.97616	NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
2.5649-20	chr1	226867603	226868102	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-5083	NR_103784	100506443	Hs.664293	NR_103784		ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
2.29148-6	chr18	54370164	54370663	+	0	NA	intron (NM_052834, intron 12 of 26)	intron (NM_052834, intron 12 of 26)	51797	NM_052834	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
7.47147-4	chr16	68812631	68813130	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	36461	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
6.32644-10	chr3	196269508	196270007	+	0	NA	Intergenic	SVA_D|Other|Other	25788	NM_001345912	348793	Hs.385865	NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
3.77786-9	chr2	203453277	203453776	+	0	NA	Intergenic	L1PA17|LINE|L1	-46375	NM_173511	150864	Hs.471130	NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
3.40084-8	chr18	77720090	77720589	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4243	NM_001136180	440498	Hs.191582	NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
2.42604	chr19	5340723	5341222	+	0	NA	promoter-TSS (NM_002850)	promoter-TSS (NM_002850)	-158	NM_130854	5802	Hs.744928	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase, receptor type S	protein-coding
12.3508	chr19	6020473	6020972	+	0	NA	TTS (NR_046376)	TTS (NR_046376)	42308	NR_046376	100128568	Hs.624525	NR_046376	ENSG00000266983	LOC100128568	-	uncharacterized LOC100128568	ncRNA
0.25028-10	chr4	137839863	137840362	+	0	NA	Intergenic	MER52A|LTR|ERV1	-274798	NR_134640	729307	Hs.552764	NR_134640		LOC729307	-	uncharacterized LOC729307	ncRNA
0.227338-20	chr13	21517595	21518094	+	0	NA	intron (NR_104058, intron 2 of 5)	intron (NR_104058, intron 2 of 5)	5723	NR_104058	101930748	Hs.637638	NR_104058	ENSG00000233780	LINC00367	-	long intergenic non-protein coding RNA 367	ncRNA
0.649968-14	chr6	104196512	104197011	+	0	NA	Intergenic	LTR1B|LTR|ERV1	1110660	NM_001321083	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
1.94499-13	chr6	86351512	86352011	+	0	NA	promoter-TSS (NM_001159675)	promoter-TSS (NM_001159675)	-592	NM_001159676	10492	Hs.571177	NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
0.660068-7	chr11	117957530	117958029	+	0	NA	promoter-TSS (NR_038318)	promoter-TSS (NR_038318)	-271	NR_038318	100526771	Hs.627426	NR_038318	ENSG00000255274	TMPRSS4-AS1	-	TMPRSS4 antisense RNA 1	ncRNA
6.43974-3	chr19	21625724	21626223	+	0	NA	Intergenic	SVA_B|Other|Other	-40544	NR_037194	400680	Hs.710554	NR_037194	ENSG00000268658	LINC00664	-	long intergenic non-protein coding RNA 664	ncRNA
0.400052-29	chr12	133136394	133136893	+	0	NA	intron (NM_001142641, intron 5 of 16)	CpG	-21940	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
1.36677-15	chr17	68164061	68164560	+	0	NA	non-coding (NR_036534, exon 1 of 1)	non-coding (NR_036534, exon 1 of 1)	1233	NR_036534	400617	Hs.225661	NR_036534	ENSG00000267365	KCNJ2-AS1	-	KCNJ2 antisense RNA 1 (head to head)	ncRNA
13.4969-3	chr5	11767066	11767565	+	0	NA	intron (NR_109988, intron 1 of 21)	MER91C|DNA|hAT-Tip100	136840	NR_109988	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
1.19186-14	chr2	236484850	236485349	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	70704	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
2.26945-14	chr17	1952943	1953442	+	0	NA	TTS (NR_029674)	TTS (NR_029674)	110	NR_029674	406921		NR_029674	ENSG00000267200	MIR132	MIRN132|miRNA132|mir-132	microRNA 132	ncRNA
0.0612309-12	chr11	128452680	128453179	+	0	NA	intron (NM_001143820, intron 1 of 9)	MER5A1|DNA|hAT-Charlie	4524	NM_001143820	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
10.8938	chr17	25658164	25658663	+	0	NA	Intergenic	Intergenic	37307	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
0.0744648-6	chr19	3500432	3500931	+	0	NA	promoter-TSS (NM_031304)	promoter-TSS (NM_031304)	-60	NM_031304	83475	Hs.515064	NM_031304	ENSG00000129932	DOHH	HLRC1|hDOHH	deoxyhypusine hydroxylase/monooxygenase	protein-coding
0.809219-23	chr17	73267144	73267643	+	0	NA	promoter-TSS (NM_001242498)	promoter-TSS (NM_001242498)	13	NR_036520	100287042	Hs.514470	NR_036520	ENSG00000263843	LOC100287042	-	uncharacterized LOC100287042	ncRNA
0.414361-3	chr4	162982318	162982817	+	0	NA	intron (NM_020116, intron 2 of 15)	intron (NM_020116, intron 2 of 15)	38682	NR_125888	101928052	Hs.647993	NR_125888	ENSG00000249419	LOC101928052	-	uncharacterized LOC101928052	ncRNA
2.0412-2	chr1	151162387	151162886	+	0	NA	promoter-TSS (NM_001271088)	promoter-TSS (NM_001271088)	53	NM_001271087	6944	Hs.2430	NM_005997	ENSG00000163159	VPS72	CFL1|Swc2|TCFL1|YL-1|YL1	vacuolar protein sorting 72 homolog	protein-coding
0.726296-5	chr19	49137577	49138076	+	0	NA	intron (NM_001352, intron 2 of 3)	intron (NM_001352, intron 2 of 3)	2981	NM_001352	1628	Hs.414480	NM_001352	ENSG00000105516	DBP	DABP	D-box binding PAR bZIP transcription factor	protein-coding
0.501223	chr10	82459192	82459691	+	0	NA	Intergenic	Intergenic	158866	NM_001145719	387694	Hs.147643	NM_207372	ENSG00000178217	SH2D4B	-	SH2 domain containing 4B	protein-coding
3.37242-12	chr17	80334844	80335343	+	0	NA	Intergenic	SVA_D|Other|Other	2940	NM_018949	2837	Hs.192720	NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
0.772745-5	chr5	115868613	115869112	+	0	NA	intron (NM_001300780, intron 1 of 19)	intron (NM_001300780, intron 1 of 19)	41760	NM_001300780	57556	Hs.156967	NM_020681	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	semaphorin 6A	protein-coding
7.01147	chr4	56261537	56262036	+	0	NA	promoter-TSS (NM_018475)	promoter-TSS (NM_018475)	-294	NR_073070	55858	Hs.479766	NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|TMPT27|TPARL	transmembrane protein 165	protein-coding
0.48177-21	chr1	153918220	153918719	+	0	NA	intron (NM_014856, intron 1 of 27)	CpG	685	NM_014856	9909	Hs.744878	NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
15.7675-8	chr12	103591539	103592038	+	0	NA	Intergenic	L1PA15|LINE|L1	46168	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA
2.9243-8	chr14	102605523	102606022	+	0	NA	promoter-TSS (NM_144574)	promoter-TSS (NM_144574)	314	NM_001017963	3320	Hs.525600	NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
0.798767-13	chr6	114175690	114176189	+	0	NA	Intergenic	Intergenic	-2575	NM_002356	4082	Hs.519909	NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
0.0305075-5	chr17	59285781	59286280	+	0	NA	intron (NM_001330413, intron 23 of 25)	intron (NM_001330413, intron 23 of 25)	159035	NR_136397	101927855	Hs.662123	NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
5.98599-8	chr4	53696	54195	+	0	NA	intron (NM_001286053, intron 1 of 7)	MER21C|LTR|ERVL	752	NM_001039127	255403	Hs.636638	NM_001039127	ENSG00000250312	ZNF718	-	zinc finger protein 718	protein-coding
1.63043-3	chr21	46749929	46750428	+	0	NA	Intergenic	Intergenic	11727	NR_103811	388830	Hs.592162	NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
7.14443-2	chr6	158068406	158068905	+	0	NA	intron (NM_153746, intron 7 of 8)	intron (NM_153746, intron 7 of 8)	118491	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
1.45087-15	chr8	142356876	142357375	+	0	NA	Intergenic	Intergenic	6477	NR_024441	731779	Hs.586414	NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
13.3442-3	chr4	169423965	169424464	+	0	NA	intron (NM_016081, intron 1 of 20)	intron (NM_016081, intron 1 of 20)	5997	NM_001166108	23022	Hs.151220	NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
2.09012	chr1	215740394	215740893	+	0	NA	promoter-TSS (NM_001319294)	promoter-TSS (NM_001319294)	-79	NM_016121	51133	Hs.335139	NM_016121	ENSG00000136636	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
2.11832-7	chrUn_gl000225	78729	79228	+	0	NA	NA	CpG	NA	NA								
0.419142-13	chr17	49337512	49338011	+	0	NA	promoter-TSS (NM_017643)	promoter-TSS (NM_017643)	-136	NM_016001	51096	Hs.709327	NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18, small subunit processome component	protein-coding
2.18963-35	chr7	128095995	128096494	+	0	NA	intron (NM_013332, intron 1 of 1)	intron (NM_013332, intron 1 of 1)	360	NM_001098786	29923	Hs.706124	NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
2.88193-3	chr12	49676733	49677232	+	0	NA	Intergenic	SVA_D|Other|Other	-11927	NM_006262	5630	Hs.37044	NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
7.74691-3	chr6	145568730	145569229	+	0	NA	Intergenic	MIR3|SINE|MIR	-487026	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
9.62574-31	chr1	155243102	155243601	+	0	NA	promoter-TSS (NM_003993)	promoter-TSS (NM_003993)	-31	NM_001294339	1196	Hs.73986	NM_001291	ENSG00000176444	CLK2	-	CDC like kinase 2	protein-coding
1.18615-12	chr6	133135243	133135742	+	0	NA	promoter-TSS (NM_001016)	promoter-TSS (NM_001016)	-216	NM_001016	6206	Hs.546289	NM_001016	ENSG00000112306	RPS12	S12	ribosomal protein S12	protein-coding
29.1009-2	chr17	51431127	51431626	+	0	NA	Intergenic	Intergenic	368496	NM_001243552	100506650	Hs.146556	NM_001243552		C17orf112	-	chromosome 17 open reading frame 112	protein-coding
3.27902-4	chr8	11622880	11623379	+	0	NA	Intergenic	Intergenic	-4043	NM_001135747	252969	Hs.293818	NM_145043	ENSG00000154328	NEIL2	NEH2|NEI2	nei like DNA glycosylase 2	protein-coding
0.472076-6	chr3	46463997	46464496	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	15197	NM_001130910	9034	Hs.535713	NM_003965	ENSG00000121797	CCRL2	ACKR5|CKRX|CRAM|CRAM-A|CRAM-B|HCR	C-C motif chemokine receptor like 2	protein-coding
6.92504-11	chr19	15408316	15408815	+	0	NA	intron (NM_001330384, intron 1 of 11)	intron (NM_001330384, intron 1 of 11)	-17303	NM_058243	23476	Hs.187763	NM_014299	ENSG00000141867	BRD4	CAP|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
21.8977	chr13	100262803	100263302	+	0	NA	intron (NM_206808, intron 1 of 8)	L1M4|LINE|L1	4134	NM_206808	171425	Hs.655642	NM_206808	ENSG00000125246	CLYBL	CLB	citrate lyase beta like	protein-coding
0.788339-16	chr8	22926377	22926876	+	0	NA	promoter-TSS (NR_027140)	promoter-TSS (NR_027140)	74	NM_003842	8795	Hs.521456	NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	TNF receptor superfamily member 10b	protein-coding
0.757207-8	chr6	1527247	1527746	+	0	NA	Intergenic	Intergenic	-78270	NR_125804	101927703	Hs.607964	NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript (non-protein coding)	ncRNA
6.38272-13	chr11	12303319	12303818	+	0	NA	Intergenic	Intergenic	-4879	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
8.26814-5	chr3	16642739	16643238	+	0	NA	intron (NM_001351, intron 1 of 10)	intron (NM_001351, intron 1 of 10)	3309	NM_001190811	1618	Hs.131179	NM_001351	ENSG00000092345	DAZL	DAZH|DAZL1|DAZLA|SPGYLA	deleted in azoospermia like	protein-coding
1.39662-33	chr1	9189028	9189893	+	0	NA	promoter-TSS (NM_024980)	promoter-TSS (NM_024980)	-231	NM_024980	80045	Hs.632367	NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
1.12383	chr8	37773640	37774139	+	0	NA	Intergenic	Intergenic	-16874	NM_001002814	80223	Hs.191179	NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
19.8297	chr3	128109615	128110114	+	0	NA	intron (NM_021937, intron 6 of 6)	L2a|LINE|L2	-72573	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
3.07153-5	chr9	36764731	36765230	+	0	NA	Intergenic	Intergenic	58616	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
1.18045-9	chr15	100882026	100882525	+	0	NA	promoter-TSS (NM_139057)	promoter-TSS (NM_139057)	-65	NM_139057	170691	Hs.513200	NM_139057	ENSG00000140470	ADAMTS17	-	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
0.357404-4	chr19	10399275	10400238	+	0	NA	promoter-TSS (NM_003259)	promoter-TSS (NM_003259)	-899	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
2.43364-17	chr1	15331527	15332026	+	0	NA	intron (NM_001017999, intron 2 of 7)	intron (NM_001017999, intron 2 of 7)	59361	NM_001017999	23254	Hs.368823	NM_015209	ENSG00000189337	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
0.0524306-17	chr8	140775469	140775968	+	0	NA	intron (NM_031466, intron 21 of 22)	L2a|LINE|L2	-60419	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
4.47332-4	chr6	6681637	6682136	+	0	NA	Intergenic	Intergenic	-58827	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
17.2125	chr15	51591597	51592096	+	0	NA	intron (NM_000103, intron 1 of 9)	intron (NM_000103, intron 1 of 9)	-11311	NM_001347250	1588	Hs.260074	NM_000103	ENSG00000137869	CYP19A1	ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM	cytochrome P450 family 19 subfamily A member 1	protein-coding
15.1999	chr2	112134900	112135399	+	0	NA	intron (NR_136166, intron 1 of 4)	intron (NR_136166, intron 1 of 4)	-56481	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
0.629839-16	chr1	167236977	167237476	+	0	NA	intron (NM_002697, intron 1 of 15)	intron (NM_002697, intron 1 of 15)	47103	NR_037163	5451	Hs.283402	NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
4.03403-4	chr11	82575161	82575660	+	0	NA	intron (NM_005040, intron 1 of 8)	intron (NM_005040, intron 1 of 8)	36235	NM_005040	5547	Hs.523936	NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
7.4958-5	chr11	109033867	109034366	+	0	NA	Intergenic	Intergenic	-258730	NM_207645	399947	Hs.172982	NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
0.80399-7	chr11	118305071	118305570	+	0	NA	Intergenic	Intergenic	-1885	NM_005933	4297	Hs.258855	NM_005933	ENSG00000118058	KMT2A	ALL-1|CXXC7|HRX|HTRX1|MLL|MLL-AF9|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
3.9794-5	chr3	113871349	113871848	+	0	NA	intron (NM_001290809, intron 4 of 7)	intron (NM_001290809, intron 4 of 7)	26025	NM_001290809	1814	Hs.121478	NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
2.26214-14	chr16	21530609	21531108	+	0	NA	non-coding (NR_002594, exon 1 of 1)	non-coding (NR_002594, exon 1 of 1)	907	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
6.81937-14	chr2	10496538	10497037	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	-12017	NM_001258358	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
3.03644-2	chr1	30182615	30183114	+	0	NA	Intergenic	Intergenic	327595	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
0.222764	chr13	75307039	75307538	+	0	NA	Intergenic	Intergenic	180308	NR_034024	338864	Hs.97408	NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
7.23538-4	chr8	128394118	128394617	+	0	NA	intron (NR_117099, intron 3 of 3)	L1PA2|LINE|L1	-18277	NR_109834	101805488	Hs.745578	NR_109834	ENSG00000280997	CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2 (non-protein coding)	ncRNA
10.2045-5	chr11	47164799	47165298	+	0	NA	intron (NM_001003678, intron 4 of 8)	intron (NM_001003678, intron 4 of 8)	33628	NM_001242832	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
5.27244-5	chr3	190222478	190222977	+	0	NA	Intergenic	Intergenic	-9113	NM_001167930	3556	Hs.478673	NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
2.05512-16	chr9	124855166	124855885	+	0	NA	exon (NM_001139442, exon 1 of 9)	exon (NM_001139442, exon 1 of 9)	360	NM_194252	158135	Hs.438937	NM_194252	ENSG00000175764	TTLL11	C9orf20|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
2.93282-7	chr5	146047112	146047611	+	0	NA	intron (NM_181675, intron 5 of 9)	MLT1M|LTR|ERVL-MaLR	-151685	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
3.7059-8	chr16	4294318	4294817	+	0	NA	Intergenic	LTR9|LTR|ERV1	-2486	NM_001323667	6345	Hs.10041	NM_001098814	ENSG00000185739	SRL	-	sarcalumenin	protein-coding
4.30626-6	chrX	152240495	152240994	+	0	NA	promoter-TSS (NM_032882)	promoter-TSS (NM_032882)	-53	NM_032882	84968	Hs.533301	NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding
23.4294	chr9	13443631	13444130	+	0	NA	Intergenic	Intergenic	-12552	NR_033863	401492	Hs.632651	NR_033863	ENSG00000270547	LINC01235	-	long intergenic non-protein coding RNA 1235	ncRNA
2.78189-18	chr7	22893762	22894261	+	0	NA	Intergenic	CpG	-2221	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
5.867-14	chr12	118405235	118405734	+	0	NA	intron (NM_173598, intron 1 of 19)	intron (NM_173598, intron 1 of 19)	544	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
0.604807-12	chr19	797617	798116	+	0	NA	intron (NM_031991, intron 1 of 13)	CpG	474	NM_031990	5725	Hs.172550	NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
2.0621-3	chr12	114295175	114295674	+	0	NA	intron (NM_001146699, intron 22 of 24)	intron (NM_001146699, intron 22 of 24)	-83936	NR_110026	100506465	Hs.211461	NR_110025	ENSG00000249550	LINC01234	LCAL84|onco-lncRNA-32	long intergenic non-protein coding RNA 1234	ncRNA
18.3863-3	chr13	67713013	67713512	+	0	NA	intron (NM_001318372, intron 2 of 4)	intron (NM_001318372, intron 2 of 4)	91206	NM_203487	5101	Hs.654709	NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
2.33587-13	chr9	66493770	66494269	+	0	NA	promoter-TSS (NR_024496)	promoter-TSS (NR_024496)	151	NR_135128	100132249	Hs.536982	NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
0.47692-22	chr11	82393193	82393692	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	51464	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
0.783135-13	chr7	114179608	114180107	+	0	NA	intron (NR_033767, intron 4 of 17)	intron (NR_033767, intron 4 of 17)	113300	NM_001172767	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
2.97569-19	chr5	32590014	32590513	+	0	NA	intron (NM_006713, intron 2 of 4)	intron (NM_006713, intron 2 of 4)	4658	NM_006713	10923	Hs.229641	NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 homolog, transcriptional regulator	protein-coding
8.63279	chr1	114600771	114601270	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	79007	NM_001286353	56944	Hs.9315	NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
4.93495-8	chr1	11333254	11333753	+	0	NA	5' UTR (NM_013319, exon 1 of 2)	5' UTR (NM_013319, exon 1 of 2)	248	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
7.64472-2	chrX	99979346	99979845	+	0	NA	intron (NM_080737, intron 1 of 18)	SVA_D|Other|Other	6927	NM_001174068	94121	Hs.592224	NM_080737	ENSG00000102362	SYTL4	SLP4	synaptotagmin like 4	protein-coding
5.43634-4	chr2	149634211	149634710	+	0	NA	intron (NM_004522, intron 1 of 25)	intron (NM_004522, intron 1 of 25)	1668	NM_004522	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
20.0922-2	chr8	127568483	127568982	+	0	NA	exon (NM_174911, exon 2 of 2)	exon (NM_174911, exon 2 of 2)	1979	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding
0.168249-23	chrX	101733661	101734160	+	0	NA	Intergenic	Intergenic	-7178	NM_001277423	100996648	Hs.737538	NM_001277423	ENSG00000215029	TCP11X2	-	t-complex 11 family, X-linked 2	protein-coding
1.83096-5	chr10	126849527	126850026	+	0	NA	promoter-TSS (NM_001329)	promoter-TSS (NM_001329)	-146	NM_001083914	1488	Hs.501345	NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
2.30623-12	chr1	197170350	197170849	+	0	NA	promoter-TSS (NR_135153)	promoter-TSS (NR_135153)	7	NM_001257965	23418	Hs.126135	NM_012076	ENSG00000134376	CRB1	LCA8|RP12	crumbs 1, cell polarity complex component	protein-coding
3.12471-8	chr6	28180567	28181066	+	0	NA	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	5891	NR_002936	222699	Hs.161441	NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
0.438316-14	chr9	123698342	123698841	+	0	NA	Intergenic	Intergenic	-7140	NM_001190945	7185	Hs.531251	NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
1.28427-14	chr1	26799218	26799717	+	0	NA	intron (NM_005517, intron 1 of 5)	CpG	565	NM_005517	3151	Hs.181163	NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
0.0833099-20	chr3	49131426	49131925	+	0	NA	promoter-TSS (NM_001320580)	promoter-TSS (NM_001320580)	131	NM_017730	54870	Hs.297389	NM_017730	ENSG00000198218	QRICH1	-	glutamine rich 1	protein-coding
0.15923-15	chr11	113906719	113907218	+	0	NA	Intergenic	CpG	-23463	NM_006006	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
2.71646-14	chr15	35087468	35088442	+	0	NA	promoter-TSS (NM_005159)	promoter-TSS (NM_005159)	-28	NM_005159	70	Hs.118127	NM_005159	ENSG00000159251	ACTC1	ACTC|ASD5|CMD1R|CMH11|LVNC4	actin, alpha, cardiac muscle 1	protein-coding
0.34328-14	chr14	105347664	105348163	+	0	NA	intron (NM_015005, intron 5 of 17)	intron (NM_015005, intron 5 of 17)	16263	NM_015005	283638	Hs.533721	NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
1.29011	chr1	45068429	45068928	+	0	NA	intron (NM_001319957, intron 1 of 13)	intron (NM_001319957, intron 1 of 13)	57513	NR_049849	100847089		NR_049849	ENSG00000263381	MIR5584	-	microRNA 5584	ncRNA
5.17126	chr9	136158928	136159427	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-8547	NM_020469	28	Hs.654423	NM_020469	ENSG00000175164	ABO	A3GALNT|A3GALT1|GTB|NAGAT	ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase	protein-coding
6.81937-7	chr12	53496629	53497128	+	0	NA	promoter-TSS (NM_003578)	promoter-TSS (NM_003578)	-396	NM_003578	8435	Hs.656544	NM_003578	ENSG00000167780	SOAT2	ACACT2|ACAT2|ARGP2	sterol O-acyltransferase 2	protein-coding
5.22879-29	chr16	11038071	11038570	+	0	NA	promoter-TSS (NM_001243403)	promoter-TSS (NM_001243403)	-25	NM_015226	23274	Hs.35490	NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16 member A	protein-coding
0.00434512-14	chr16	22213043	22213542	+	0	NA	Intergenic	Intergenic	-4300	NM_013302	29904	Hs.498892	NM_013302	ENSG00000103319	EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
4.58421-2	chr17	50183925	50184424	+	0	NA	intron (NM_001082533, intron 2 of 9)	intron (NM_001082533, intron 2 of 9)	51958	NM_020178	56934	Hs.463466	NM_020178	ENSG00000154975	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase 10	protein-coding
0.150229-5	chr21	47016542	47017041	+	0	NA	Intergenic	Intergenic	-54406	NM_001205206	6573	Hs.84190	NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	solute carrier family 19 member 1	protein-coding
2.9073-3	chr9	139220522	139221021	+	0	NA	non-coding (NR_026964, exon 1 of 1)	non-coding (NR_026964, exon 1 of 1)	1008	NR_026964	26102	Hs.561893	NR_026964	ENSG00000262075	DKFZP434A062	-	uncharacterized LOC26102	ncRNA
4.86782	chr6	162906495	162906994	+	0	NA	intron (NM_013987, intron 1 of 10)	intron (NM_013987, intron 1 of 10)	-241420	NM_001080378	135138	Hs.25791	NM_152410	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG	PARK2 coregulated	protein-coding
2.51037-14	chr20	12550956	12551455	+	0	NA	Intergenic	Intergenic	366406	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
2.9073-9	chr20	56998057	56998556	+	0	NA	intron (NM_001195677, intron 2 of 2)	AluSp|SINE|Alu	34131	NM_001195677	9217	Hs.182625	NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
11.549	chr13	77605918	77606417	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-4836	NM_012158	26224	Hs.508284	NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A	F-box and leucine rich repeat protein 3	protein-coding
6.34512-7	chr2	166318905	166319404	+	0	NA	Intergenic	Intergenic	-7003	NM_001172173	80034	Hs.470479	NM_024969	ENSG00000178662	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding
2.71646	chr9	127962755	127963254	+	0	NA	promoter-TSS (NR_135145)	promoter-TSS (NR_135145)	142	NM_005833	10244	Hs.19012	NM_005833	ENSG00000136933	RABEPK	RAB9P40|bA65N13.1|p40	Rab9 effector protein with kelch motifs	protein-coding
0.227338-23	chr19	24216413	24216912	+	0	NA	intron (NM_001278677, intron 1 of 5)	intron (NM_001278677, intron 1 of 5)	455	NM_001278663	9534	Hs.434406	NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
2.38824-2	chr1	174231903	174232402	+	0	NA	intron (NM_014857, intron 7 of 20)	LTR41B|LTR|ERVL	103600	NM_014857	9910	Hs.585378	NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
0.338583-17	chr6	138550245	138550744	+	0	NA	intron (NM_020340, intron 4 of 33)	MIRb|SINE|MIR	-10867	NM_021635	59351	Hs.302016	NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
0.296531-83	chr13	51486027	51486526	+	0	NA	intron (NM_001142279, intron 1 of 9)	intron (NM_001142279, intron 1 of 9)	-1428	NR_046552	100874255	Hs.741501	NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
3.75718-6	chr11	67573123	67573622	+	0	NA	promoter-TSS (NR_024249)	promoter-TSS (NR_024249)	-565	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
0.467237-2	chr8	114445561	114446538	+	0	NA	intron (NM_052900, intron 1 of 68)	intron (NM_052900, intron 1 of 68)	3193	NM_052900	114788	Hs.91381	NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
9.82967-10	chr11	44895114	44895613	+	0	NA	intron (NM_130783, intron 2 of 8)	intron (NM_130783, intron 2 of 8)	76396	NM_001318384	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
1.33713	chr1	156060442	156060941	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	8354	NM_001282625	4000	Hs.594444	NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
0.649968-8	chr1	33347357	33347856	+	0	NA	Intergenic	Intergenic	-4492	NM_002143	3208	Hs.632391	NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
4.85452-4	chr4	143395656	143396155	+	0	NA	intron (NM_003866, intron 2 of 26)	L1PA14|LINE|L1	371783	NM_001331040	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
0.48177-41	chr8	133067574	133068073	+	0	NA	intron (NM_001080399, intron 1 of 13)	Tigger8|DNA|TcMar-Tigger	3804	NM_001080399	729330	Hs.653174	NM_001080399	ENSG00000253117	OC90	PLA2L	otoconin 90	protein-coding
2.36572-12	chr1	155146036	155146535	+	0	NA	promoter-TSS (NR_046329)	promoter-TSS (NR_046329)	22	NM_001256599	80128	Hs.287735	NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
2.74088-8	chr10	62492969	62493468	+	0	NA	promoter-TSS (NM_001204403)	promoter-TSS (NM_001204403)	66	NM_001204403	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
0.381045-7	chr1	94311810	94312309	+	0	NA	promoter-TSS (NR_030621)	promoter-TSS (NR_030621)	-329	NR_030621	100126348		NR_030621	ENSG00000211575	MIR760	MIRN760|hsa-mir-760|mir-760	microRNA 760	ncRNA
0.0305075-60	chr5	18630350	18630849	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	823216	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
0.888424-22	chr19	5360359	5360858	+	0	NA	Intergenic	Intergenic	-19794	NM_130854	5802	Hs.744928	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase, receptor type S	protein-coding
2.11832-20	chr14	19649806	19650305	+	0	NA	promoter-TSS (NR_122112)	promoter-TSS (NR_122112)	18	NR_122112	642477	Hs.474095	NR_122111		LINC01296	-	long intergenic non-protein coding RNA 1296	ncRNA
0.172766-27	chr17	72744887	72745386	+	0	NA	TTS (NR_037409)	TTS (NR_037409)	384	NR_037409	100500847		NR_037409	ENSG00000109062	MIR3615	mir-3615	microRNA 3615	ncRNA
18.4466-3	chrX	131182929	131183428	+	0	NA	intron (NM_001042453, intron 2 of 10)	AluJb|SINE|Alu	25542	NM_001042452	51765	Hs.444247	NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
1.79799-21	chr6	115822608	115823107	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	142142	NR_134602	105377962	Hs.571066	NR_134602		LOC105377962	-	uncharacterized LOC105377962	ncRNA
3.13364-8	chr11	61280911	61281410	+	0	NA	TTS (NM_001300773)	TTS (NM_001300773)	4888	NM_001145077	390205	Hs.441122	NM_001145077	ENSG00000204950	LRRC10B	-	leucine rich repeat containing 10B	protein-coding
19.7881-3	chr9	130262618	130263117	+	0	NA	intron (NM_001005373, intron 24 of 25)	intron (NM_001005373, intron 24 of 25)	48333	NM_001005374	90678	Hs.495188	NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
0.301184-8	chrX	57147543	57148042	+	0	NA	5' UTR (NM_001282462, exon 1 of 3)	5' UTR (NM_001282462, exon 1 of 3)	187	NM_001006681	474343	Hs.460717	NM_001006681	ENSG00000186787	SPIN2B	SPIN-2|SPIN-2B|SPIN2_duplicate|TDRD26|dJ323P24.2	spindlin family member 2B	protein-coding
13.4294	chr8	131342102	131342601	+	0	NA	intron (NM_001247996, intron 4 of 30)	intron (NM_001247996, intron 4 of 30)	-33572	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
7.69551-2	chr13	52396483	52396982	+	0	NA	intron (NR_027047, intron 3 of 4)	intron (NR_027047, intron 3 of 4)	-18434	NM_024705	79758	Hs.266728	NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
0.00434512-43	chr2	8825841	8826340	+	0	NA	Intergenic	CpG	3977	NM_002166	3398	Hs.180919	NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2, HLH protein	protein-coding
3.31614-2	chr17	37009776	37010275	+	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	28	NM_000978	9349	Hs.406300	NM_000978	ENSG00000125691	RPL23	L23|rpL17	ribosomal protein L23	protein-coding
0.168249-9	chr20	52051078	52051577	+	0	NA	intron (NM_001193421, intron 2 of 2)	intron (NM_001193421, intron 2 of 2)	-117982	NR_110051	101927770		NR_110051		LOC101927770	-	uncharacterized LOC101927770	ncRNA
0.296531-61	chr1	2242889	2243388	+	0	NA	Intergenic	Intergenic	40962	NR_024489	100129534	Hs.655313	NM_001127577	ENSG00000269896	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
18.1531-4	chr19	8106441	8106940	+	0	NA	Intergenic	Intergenic	-10956	NM_005624	6370	Hs.310511	NM_005624	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	C-C motif chemokine ligand 25	protein-coding
0.0305075-39	chr13	50961112	50961611	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	140224	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
1.85752-7	chr11	22688376	22688875	+	0	NA	intron (NM_001143830, intron 1 of 7)	intron (NM_001143830, intron 1 of 7)	465	NM_001143830	2620	Hs.711297	NM_005256	ENSG00000148935	GAS2	-	growth arrest specific 2	protein-coding
9.74694-11	chr12	122842515	122843014	+	0	NA	intron (NM_198240, intron 5 of 23)	SVA_D|Other|Other	-37325	NR_045382	100507066	Hs.624253	NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
1.41463-5	chr7	44887521	44888020	+	0	NA	promoter-TSS (NM_012412)	promoter-TSS (NM_012412)	-45	NM_012412	94239	Hs.488189	NM_012412	ENSG00000105968	H2AFV	H2A.Z-2|H2AV	H2A histone family member V	protein-coding
0.496351-34	chr1	218959376	218959875	+	0	NA	intron (NR_031644, intron 4 of 6)	intron (NR_031644, intron 4 of 6)	343657	NR_125715	103611157	Hs.133379	NR_125715	ENSG00000281453	TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
9.20819-10	chr11	16980317	16980816	+	0	NA	intron (NM_001329631, intron 3 of 22)	intron (NM_001329631, intron 3 of 22)	55397	NM_175058	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
2.1254-14	chr6	139696688	139697187	+	0	NA	Intergenic	Intergenic	-1150	NM_006079	10370	Hs.82071	NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
0.190881-25	chr5	121829063	121829562	+	0	NA	Intergenic	Intergenic	-14530	NR_051996	153163	Hs.679757	NR_051996	ENSG00000250328	MGC32805	-	uncharacterized LOC153163	ncRNA
4.46117-5	chr14	42074941	42075440	+	0	NA	promoter-TSS (NM_001346175)	promoter-TSS (NM_001346175)	-869	NM_001346175	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
4.698-10	chr8	21867788	21868287	+	0	NA	Intergenic	CpG	-13584	NM_001286680	10361	Hs.131055	NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
6.0206-2	chr2	161561362	161561861	+	0	NA	Intergenic	Intergenic	-211293	NM_002897	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
9.70616-10	chrX	39183765	39184264	+	0	NA	intron (NR_038968, intron 1 of 3)	intron (NR_038968, intron 1 of 3)	2602	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
8.99629-11	chr1	205649604	205650103	+	0	NA	promoter-TSS (NM_033102)	promoter-TSS (NM_033102)	-223	NM_033102	85414	Hs.278695	NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
2.74905-3	chr8	51364789	51365288	+	0	NA	intron (NM_001321778, intron 8 of 16)	intron (NM_001321778, intron 8 of 16)	288347	NM_001321778	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
9.06578-12	chr20	46537669	46538168	+	0	NA	Intergenic	Intergenic	-74052	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
0.241089-15	chr16	90039070	90039569	+	0	NA	promoter-TSS (NM_145039)	promoter-TSS (NM_145039)	-79	NM_145039	92806	Hs.513832	NM_145039	ENSG00000177946	CENPBD1	-	CENPB DNA-binding domain containing 1	protein-coding
6.75718-2	chr1	64681152	64681651	+	0	NA	intron (NM_152489, intron 5 of 8)	intron (NM_152489, intron 5 of 8)	12100	NM_152489	148581	Hs.388746	NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U (putative)	protein-coding
4.12289-9	chr3	149934166	149934665	+	0	NA	Intergenic	Intergenic	-21891	NR_110168	101927992	Hs.534682	NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
7.61954-2	chr18	73074310	73074809	+	0	NA	Intergenic	Intergenic	65099	NM_001037331	284274	Hs.666744	NM_001037331	ENSG00000206026	SMIM21	C18orf62	small integral membrane protein 21	protein-coding
0.222764-25	chr5	69320956	69321455	+	0	NA	5' UTR (NM_022968, exon 1 of 3)	5' UTR (NM_022968, exon 1 of 3)	127	NM_001178087	728492	Hs.559428	NM_022978	ENSG00000205572	SERF1B	FAM2B|H4F5C|h4F5	small EDRK-rich factor 1B	protein-coding
1.37869-8	chr11	59333511	59334010	+	0	NA	Intergenic	Intergenic	28871	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
0.680339-9	chr15	41952675	41953174	+	0	NA	intron (NM_001164273, intron 1 of 23)	CpG	314	NM_001080541	23269	Hs.187569	NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MGA, MAX dimerization protein	protein-coding
0.0305075-76	chr3	115538539	115539038	+	0	NA	intron (NM_001318915, intron 7 of 8)	intron (NM_001318915, intron 7 of 8)	196637	NM_001130064	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
3.22393-21	chr11	63788949	63789448	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	35873	NM_017670	55611	Hs.473788	NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
4.65974-17	chr11	76756937	76757436	+	0	NA	Intergenic	CpG	11801	NM_138706	192134	Hs.352622	NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
0.310503-8	chr10	135523087	135523586	+	0	NA	Intergenic	TAR1|Satellite|telo	-83037	NM_001080998	441581	Hs.690471	NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
0.419142-36	chr5	77656035	77656534	+	0	NA	promoter-TSS (NR_110885)	promoter-TSS (NR_110885)	-43	NR_110885	9522	Hs.482587	NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
3.28827-16	chr5	41510306	41511009	+	0	NA	promoter-TSS (NM_001005473)	promoter-TSS (NM_001005473)	73	NM_001005473	345557	Hs.145404	NM_001005473	ENSG00000182836	PLCXD3	-	phosphatidylinositol specific phospholipase C X domain containing 3	protein-coding
4.92144-9	chr16	67464286	67464785	+	0	NA	promoter-TSS (NM_000196)	promoter-TSS (NM_000196)	-501	NM_000196	3291	Hs.1376	NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
4.93495-7	chr10	91403546	91404045	+	0	NA	promoter-TSS (NM_138316)	promoter-TSS (NM_138316)	-147	NM_148978	53354	Hs.163555	NM_138316	ENSG00000152782	PANK1	PANK	pantothenate kinase 1	protein-coding
0.241089-30	chr16	89632040	89632808	+	0	NA	3' UTR (NM_001243130, exon 6 of 6)	3' UTR (NM_001243130, exon 6 of 6)	4586	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
5.62249-4	chr4	190942964	190943463	+	0	NA	Intergenic	CpG	5199	NM_001286820	448831	Hs.626907	NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
12.7901	chr13	50336541	50337040	+	0	NA	intron (NM_002267, intron 1 of 16)	SVA_C|Other|Other	30267	NM_002267	3839	Hs.527919	NM_002267	ENSG00000102753	KPNA3	IPOA4|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
0.163737-36	chr6	151187256	151187755	+	0	NA	promoter-TSS (NM_001242768)	promoter-TSS (NM_001242768)	36	NM_001242768	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
7.61954-16	chr15	89740087	89740586	+	0	NA	3' UTR (NM_007011, exon 15 of 15)	3' UTR (NM_007011, exon 15 of 15)	24586	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
0.76238-8	chrX	40012902	40013401	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	23431	NM_001123383	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
0.604807-13	chr1	41846587	41847086	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	-5495	NR_135817	101929901		NR_135817	ENSG00000229901	LOC101929901	-	uncharacterized LOC101929901	ncRNA
22.1753-3	chr17	55641163	55641662	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-40454	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
18.2102-2	chr14	38140131	38140630	+	0	NA	intron (NM_001310135, intron 3 of 32)	MLT1F|LTR|ERVL-MaLR	75976	NM_001310135	319089	Hs.659936	NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
0.357404-21	chr8	12464908	12465407	+	0	NA	intron (NR_047662, intron 3 of 8)	CpG-25437	57963	NR_047662	729732	Hs.322761	NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
2.39578-5	chr9	13033909	13034408	+	0	NA	Intergenic	Intergenic	-61526	NR_132976	106635615		NR_132976		SNORD137	-	small nucleolar RNA, C/D box 137	snoRNA
8.69666-11	chr20	18707498	18707997	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	-28395	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA
8.9279-2	chr8	18967735	18968234	+	0	NA	Intergenic	Intergenic	-96788	NM_015310	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
0.209071-21	chr17	75224328	75224827	+	0	NA	Intergenic	Intergenic	43282	NM_001144001	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
0.0833099-31	chr2	75061904	75062403	+	0	NA	intron (NM_000189, intron 1 of 17)	CpG	2371	NM_000189	3099	Hs.406266	NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
3.08035-11	chr3	112324031	112324530	+	0	NA	exon (NM_199511, exon 8 of 8)	exon (NM_199511, exon 8 of 8)	-3464	NR_109779	100506621	Hs.86538	NR_109779		LINC01279	-	long intergenic non-protein coding RNA 1279	ncRNA
5.33132-4	chrX	71481826	71482325	+	0	NA	intron (NM_001170747, intron 3 of 3)	L2c|LINE|L2	15066	NM_001007	6191	Hs.118076	NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10	ribosomal protein S4, X-linked	protein-coding
0.0612309-40	chr4	146208345	146208844	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-107762	NM_001102653	54726	Hs.270851	NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
21.0403-2	chr22	24824940	24825439	+	0	NA	TTS (NR_028484)	TTS (NR_028484)	1659	NM_000675	135	Hs.197029	NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
1.85752-6	chr3	5829424	5829923	+	0	NA	Intergenic	Intergenic	-537733	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
0.291884-2	chr1	167691441	167691940	+	0	NA	intron (NM_003953, intron 1 of 5)	CpG	503	NM_001146191	9019	Hs.493919	NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
7.28158-5	chr2	23777232	23777731	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	169183	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
1.00179-11	chr7	152664923	152665422	+	0	NA	Intergenic	MER50|LTR|ERV1	208338	NM_020445	57180	Hs.647117	NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	ARP3 actin related protein 3 homolog B	protein-coding
5.98599-7	chr7	5526411	5526910	+	0	NA	intron (NM_024963, intron 4 of 4)	CpG	8888	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
1.36677-17	chrX	106872050	106872549	+	0	NA	intron (NM_001204402, intron 1 of 3)	intron (NM_001204402, intron 1 of 3)	645	NM_001204402	5631	Hs.56	NM_002764	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
3.15155	chr9	70646861	70647360	+	0	NA	Intergenic	SST1|Satellite|centr	-156899	NM_001024916	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding
0.414361-7	chr7	113061674	113062173	+	0	NA	Intergenic	Intergenic	-303286	NR_024412	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
16.1083	chr12	11859316	11859815	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	56777	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
1.07905-22	chr19	19145002	19145501	+	0	NA	promoter-TSS (NM_001321699)	promoter-TSS (NM_001321699)	-390	NM_001321697	10147	Hs.77876	NM_014884	ENSG00000064607	SUGP2	SFRS14	SURP and G-patch domain containing 2	protein-coding
3.16053	chr16	67280472	67280971	+	0	NA	intron (NM_001318202, intron 1 of 23)	CpG	704	NM_013241	29109	Hs.95231	NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
0.47692-13	chr5	133772111	133772610	+	0	NA	Intergenic	Intergenic	-1622	NR_105044	102546229		NR_105044		LOC102546229	-	uncharacterized LOC102546229	ncRNA
12.8567	chr18	32606292	32606791	+	0	NA	intron (NM_001143827, intron 2 of 7)	intron (NM_001143827, intron 2 of 7)	-14783	NM_014268	10982	Hs.532824	NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
0.877779-2	chr17	74732675	74733174	+	0	NA	promoter-TSS (NM_001242533)	promoter-TSS (NM_001242533)	277	NM_001242534	79157	Hs.73965	NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
6.19789-6	chr9	117266512	117267011	+	0	NA	exon (NM_001173425, exon 1 of 12)	exon (NM_001173425, exon 1 of 12)	975	NM_015404	25861	Hs.93836	NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
0.0656377-14	chr18	57179215	57179714	+	0	NA	intron (NM_133459, intron 2 of 10)	LTR1|LTR|ERV1	-152956	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
0.34328-2	chr1	202431405	202431904	+	0	NA	promoter-TSS (NM_032104)	promoter-TSS (NM_032104)	-217	NM_032104	4660	Hs.444403	NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
4.25969	chr16	57791042	57791541	+	0	NA	TTS (NM_001130100)	TTS (NM_001130100)	14973	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
7.52027-10	chr6	6841715	6842214	+	0	NA	Intergenic	Intergenic	-218905	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
2.1254-5	chr6	36997083	36997582	+	0	NA	TTS (NM_173558)	TTS (NM_173558)	23909	NM_173558	221472	Hs.509664	NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
16.3827-7	chr9	112107596	112108095	+	0	NA	Intergenic	Intergenic	-24601	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
1.96543-11	chr6	149969541	149970040	+	0	NA	5' UTR (NM_001204076, exon 1 of 8)	5' UTR (NM_001204076, exon 1 of 8)	150	NM_007044	11104	Hs.450175	NM_007044	ENSG00000186625	KATNA1	-	katanin catalytic subunit A1	protein-coding
5.8838-4	chr19	39287771	39288270	+	0	NA	Intergenic	SVA_D|Other|Other	8170	NM_001042507	653499	Hs.558355	NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding
1.73925-7	chr11	130184788	130185287	+	0	NA	promoter-TSS (NM_001301098)	promoter-TSS (NM_001301098)	-430	NM_001301098	29068	Hs.721470	NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
2.24026	chr20	48951584	48952083	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-13954	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
9.10095-2	chr14	91715908	91716407	+	0	NA	intron (NM_003485, intron 1 of 1)	AluSz|SINE|Alu	4067	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
0.34328-19	chr10	74123948	74124447	+	0	NA	Intergenic	Intergenic	-9290	NM_001002762	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
0.296531-76	chr12	125093547	125094046	+	0	NA	Intergenic	Intergenic	-41786	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
4.01209-10	chr8	56013592	56014091	+	0	NA	Intergenic	CpG	-1176	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	XK related 4	protein-coding
0.47692-3	chr3	10157017	10157516	+	0	NA	promoter-TSS (NM_018462)	promoter-TSS (NM_018462)	-67	NM_018462	55845	Hs.649307	NM_018462	ENSG00000254999	BRK1	C3orf10|HSPC300|MDS027|hHBrk1	BRICK1, SCAR/WAVE actin nucleating complex subunit	protein-coding
22.233	chr2	22158316	22158815	+	0	NA	Intergenic	MIRc|SINE|MIR	-225041	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
19.1009-2	chrX	15931193	15931692	+	0	NA	Intergenic	Intergenic	-58305	NM_001272071	8905	Hs.121592	NM_003916	ENSG00000182287	AP1S2	DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor related protein complex 1 sigma 2 subunit	protein-coding
2.01349-2	chr4	140808551	140809050	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	221878	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
4.27128-17	chr2	234322113	234322612	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	25562	NM_003648	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
4.92144-7	chr11	762304	762803	+	0	NA	intron (NM_006755, intron 4 of 7)	L1ME1|LINE|L1	14949	NR_134868	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
18.2102-3	chr1	236046674	236047173	+	0	NA	promoter-TSS (NM_001301365)	promoter-TSS (NM_001301365)	85	NM_001301365	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
3.8405-9	chr6	141630208	141630707	+	0	NA	Intergenic	MER50|LTR|ERV1	625506	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
3.74688-4	chr12	113659430	113659929	+	0	NA	promoter-TSS (NM_138451)	promoter-TSS (NM_138451)	436	NM_001143819	53373	Hs.524763	NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
22.1681	chr12	2045988	2046487	+	0	NA	promoter-TSS (NR_036546)	promoter-TSS (NR_036546)	-495	NR_036546	100271702	Hs.737031	NR_036546	ENSG00000235049	LINC00940	-	long intergenic non-protein coding RNA 940	ncRNA
3.63512-17	chr22	29949528	29950027	+	0	NA	promoter-TSS (NM_001002878)	promoter-TSS (NM_001002878)	-41	NM_001002877	8563	Hs.75361	NM_003678	ENSG00000100296	THOC5	C22orf19|Fmip|PK1.3|fSAP79	THO complex 5	protein-coding
0.888424-49	chr7	55635156	55635655	+	0	NA	intron (NM_001321244, intron 1 of 5)	intron (NM_001321244, intron 1 of 5)	4156	NM_001321250	81552	Hs.488307	NM_030796	ENSG00000154978	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
0.163737-4	chr3	194206892	194207391	+	0	NA	promoter-TSS (NR_033929)	promoter-TSS (NR_033929)	-728	NR_033929	401106	Hs.407087	NR_033929		LINC00884	-	long intergenic non-protein coding RNA 884	ncRNA
1.08463-4	chr9	135937004	135937503	+	0	NA	promoter-TSS (NM_001807)	promoter-TSS (NM_001807)	-112	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
22.84	chr5	6545783	6546282	+	0	NA	Intergenic	MER87B|LTR|ERV1	-36217	NR_024423	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
10.1278	chr4	23373647	23374146	+	0	NA	Intergenic	SVA_E|Other|Other	509019	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
0.362122	chr19	17413981	17414480	+	0	NA	promoter-TSS (NM_024527)	promoter-TSS (NM_024527)	52	NM_024527	79575	Hs.515664	NM_024527	ENSG00000127220	ABHD8	-	abhydrolase domain containing 8	protein-coding
0.649968-35	chr20	44642398	44642897	+	0	NA	intron (NM_004994, intron 10 of 12)	CpG	5100	NM_004994	4318	Hs.297413	NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
13.279-12	chr18	25756830	25757329	+	0	NA	5' UTR (NM_001792, exon 1 of 16)	5' UTR (NM_001792, exon 1 of 16)	331	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
0.0921731-20	chr5	10354946	10355445	+	0	NA	intron (NM_001270661, intron 1 of 22)	MIRc|SINE|MIR	1444	NM_001270661	10299	Hs.432862	NM_005885	ENSG00000145495	MARCH6	DOA10|MARCH-VI|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
2.61219-31	chr17	61523532	61524031	+	0	NA	promoter-TSS (NM_001915)	promoter-TSS (NM_001915)	-59	NM_001915	1534	Hs.355264	NM_001915	ENSG00000008283	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
3.30683-3	chr14	19107935	19108434	+	0	NA	Intergenic	Intergenic	-269410	NM_001013354	440153	Hs.534880	NM_001013354	ENSG00000257115	OR11H12	-	olfactory receptor family 11 subfamily H member 12	protein-coding
9.70616-2	chr8	40684941	40685440	+	0	NA	intron (NM_001135731, intron 1 of 5)	intron (NM_001135731, intron 1 of 5)	70153	NM_001135731	79698	Hs.591850	NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
9.95679-11	chr4	140098958	140099457	+	0	NA	promoter-TSS (NM_001331036)	promoter-TSS (NM_001331036)	-835	NM_001331036	1998	Hs.634040	NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
0.231917-6	chr3	149525877	149526376	+	0	NA	Intergenic	L1MA4A|LINE|L1	-4349	NM_007282	11342	Hs.12333	NM_007282	ENSG00000082996	RNF13	RZF	ring finger protein 13	protein-coding
0.118872-42	chr18	42428801	42429300	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	121081	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
12.1824-2	chr15	39561945	39562444	+	0	NA	Intergenic	Intergenic	19324	NR_144508	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
0.070049-33	chr1	145397541	145398040	+	0	NA	intron (NM_001039703, intron 68 of 85)	intron (NM_001039703, intron 68 of 85)	-15386	NR_125967	101928979	Hs.735893	NR_125967	ENSG00000233396	LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
9.66576-20	chr6	100294917	100295416	+	0	NA	Intergenic	Intergenic	-146748	NR_038384	728012	Hs.434366	NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
0.48177-36	chr20	31683625	31684124	+	0	NA	intron (NM_182519, intron 10 of 15)	intron (NM_182519, intron 10 of 15)	14556	NM_182519	149954	Hs.38961	NM_182519	ENSG00000186191	BPIFB4	C20orf186|LPLUNC4|RY2G5|dJ726C3.5	BPI fold containing family B member 4	protein-coding
6.34512-19	chr9	6616928	6617427	+	0	NA	intron (NM_000170, intron 3 of 24)	intron (NM_000170, intron 3 of 24)	28515	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine decarboxylase	protein-coding
2.76544-8	chr6	39197038	39197537	+	0	NA	promoter-TSS (NM_003740)	promoter-TSS (NM_003740)	-36	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
3.74688-17	chr6	3118941	3119440	+	0	NA	intron (NM_004332, intron 1 of 6)	CpG	580	NM_001302777	670	Hs.10136	NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
2.69218-2	chr12	58146096	58146595	+	0	NA	promoter-TSS (NM_000075)	promoter-TSS (NM_000075)	-115	NM_000075	1019	Hs.95577	NM_000075	ENSG00000135446	CDK4	CMM3|PSK-J3	cyclin dependent kinase 4	protein-coding
18.9279-4	chr14	92863388	92863887	+	0	NA	intron (NM_153646, intron 2 of 16)	intron (NM_153646, intron 2 of 16)	73485	NM_153646	123041	Hs.385530	NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
0.127808-15	chr6	165462801	165463300	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-227498	NR_131926	105378111		NR_131926		MEAT6	-	melanoma-associated transcript 6	ncRNA
2.74088-3	chr10	105251582	105252081	+	0	NA	intron (NR_120675, intron 3 of 3)	intron (NR_120675, intron 3 of 3)	-1904	NM_004210	9148	Hs.594708	NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
9.1364-16	chr1	143981958	143982457	+	0	NA	Intergenic	Intergenic	-67360	NR_144320	728833	Hs.535577	NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
17.8516-7	chr11	97227128	97227627	+	0	NA	Intergenic	Intergenic	985788	NR_135097	105369443	Hs.599377	NR_135097	ENSG00000256684	LOC105369443	-	uncharacterized LOC105369443	ncRNA
3.01899-8	chr6	134883691	134884190	+	0	NA	Intergenic	Intergenic	-22797	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA
18.3268-4	chr6	112306278	112306777	+	0	NA	Intergenic	Intergenic	-68751	NR_125354	8838	Hs.558428	NM_003880	ENSG00000112761	WISP3	CCN6|LIBC|PPAC|PPD|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding
10.1278-5	chr6	158100986	158101485	+	0	NA	Intergenic	Intergenic	-142968	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
13.279-13	chr6	90007681	90008180	+	0	NA	intron (NM_002043, intron 2 of 8)	intron (NM_002043, intron 2 of 8)	17088	NM_002043	2570	Hs.379330	NM_002043	ENSG00000111886	GABRR2	-	gamma-aminobutyric acid type A receptor rho2 subunit	protein-coding
0.710923-4	chr11	76029766	76030265	+	0	NA	Intergenic	Intergenic	61994	NR_130898	5612	Hs.503315	NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
3.93619-18	chr2	10593109	10593995	+	0	NA	intron (NR_110597, intron 3 of 4)	intron (NR_110597, intron 3 of 4)	3698	NR_110597	101929715	Hs.634550	NR_110597		LOC101929715	-	uncharacterized LOC101929715	ncRNA
0.736576-32	chr11	67236583	67237082	+	0	NA	promoter-TSS (NM_001078650)	promoter-TSS (NM_001078650)	-84	NM_001078651	80194	Hs.288761	NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
0.920515-26	chr1	218539890	218540389	+	0	NA	intron (NM_001135599, intron 2 of 7)	intron (NM_001135599, intron 2 of 7)	-21119	NR_046268	728463	Hs.568469	NR_046268	ENSG00000232480	TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
0.204516-2	chr13	101270721	101271220	+	0	NA	intron (NM_032813, intron 15 of 18)	SVA_D|Other|Other	-29924	NM_001195087	87769	Hs.350868	NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
0.772745-14	chr8	104153412	104153911	+	0	NA	promoter-TSS (NR_027071)	promoter-TSS (NR_027071)	-91	NR_027071	157556	Hs.459124	NM_198099	ENSG00000236939	BAALC-AS2	BAALCOS|C8orf56	BAALC antisense RNA 2	ncRNA
2.11125-6	chr1	15929899	15930398	+	0	NA	Intergenic	CpG	-13805	NM_032341	84301	Hs.718857	NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
3.40084-9	chr3	193798580	193799079	+	0	NA	Intergenic	Intergenic	-10070	NR_136179	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
1.02373-12	chr2	177502157	177502656	+	0	NA	promoter-TSS (NR_040001)	promoter-TSS (NR_040001)	-76	NR_110599	102724224	Hs.663125	NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
4.88117-7	chr1	205216604	205217103	+	0	NA	intron (NM_001297611, intron 1 of 3)	intron (NM_001297611, intron 1 of 3)	1229	NM_001297611	9911	Hs.6360	NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
0.400052-14	chr8	60698925	60699863	+	0	NA	Intergenic	MER34-int|LTR|ERV1	494588	NR_135821	767	Hs.654388	NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
0.535477-14	chr8	99318453	99318952	+	0	NA	Intergenic	Intergenic	-12081	NR_135746	79815	Hs.309489	NM_024759	ENSG00000104361	NIPAL2	NPAL2	NIPA like domain containing 2	protein-coding
3.36299-11	chr17	60781048	60781547	+	0	NA	TTS (NM_001288780)	TTS (NM_001288780)	76535	NM_006039	9902	Hs.7835	NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C type 2	protein-coding
10.9205-2	chr1	33501649	33502148	+	0	NA	intron (NM_001319140, intron 1 of 6)	intron (NM_001319140, intron 1 of 6)	614	NM_001319143	204	Hs.470907	NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
3.49692-2	chr6	157254249	157254748	+	0	NA	intron (NM_020732, intron 4 of 19)	intron (NM_020732, intron 4 of 19)	-153633	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
6.92504-15	chr16	68406961	68407460	+	0	NA	intron (NM_018667, intron 2 of 8)	intron (NM_018667, intron 2 of 8)	62193	NM_001290018	54496	Hs.640229	NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
0.376307-37	chr7	86848832	86849331	+	0	NA	5' UTR (NM_024315, exon 1 of 4)	5' UTR (NM_024315, exon 1 of 4)	233	NM_024315	79161	Hs.619593	NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
5.73489-5	chr2	232347364	232347863	+	0	NA	Intergenic	Intergenic	-18408	NM_005381	4691	Hs.79110	NM_005381	ENSG00000115053	NCL	C23	nucleolin	protein-coding
3.40084-13	chr14	23541018	23541517	+	0	NA	promoter-TSS (NM_001164816)	promoter-TSS (NM_001164816)	-488	NM_001164817	22985	Hs.124490	NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
17.1897-4	chr9	34399224	34399723	+	0	NA	3' UTR (NM_147202, exon 6 of 6)	3' UTR (NM_147202, exon 6 of 6)	-1624	NM_032596	84688	Hs.50334	NM_032596	ENSG00000164972	C9orf24	CBE1|NYD-SP22|SMRP1|bA573M23.4	chromosome 9 open reading frame 24	protein-coding
6.17983-6	chr10	121023585	121024084	+	0	NA	intron (NM_005308, intron 1 of 15)	MLT1K|LTR|ERVL-MaLR	56637	NM_005308	2869	Hs.524625	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding
4.4855-10	chrX	23522263	23522762	+	0	NA	Intergenic	Intergenic	-163133	NM_006406	10549	Hs.83383	NM_006406	ENSG00000123131	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
0.190881-32	chr3	150582943	150583442	+	0	NA	Intergenic	Intergenic	78831	NM_052995	7401	Hs.745448	NM_052995	ENSG00000163646	CLRN1	RP61|USH3|USH3A	clarin 1	protein-coding
6.94649	chr4	153567394	153567893	+	0	NA	intron (NM_152680, intron 3 of 6)	intron (NM_152680, intron 3 of 6)	33674	NM_152680	201799	Hs.518900	NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
0.809219-9	chr10	12656520	12657019	+	0	NA	intron (NM_020397, intron 2 of 9)	intron (NM_020397, intron 2 of 9)	36017	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
1.16339-9	chr5	179248271	179248770	+	0	NA	intron (NM_003900, intron 1 of 7)	CpG	678	NM_003900	8878	Hs.587290	NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
1.89767-9	chr3	111871405	111871904	+	0	NA	intron (NR_135297, intron 21 of 22)	LTR5B|LTR|ERVK	-19502	NM_152785	257144	Hs.49614	NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
1.60522-2	chr7	37332866	37333365	+	0	NA	intron (NM_001206482, intron 4 of 21)	SVA_D|Other|Other	60157	NM_001206482	9844	Hs.434989	NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
4.38899	chr9	42367550	42368247	+	0	NA	promoter-TSS (NM_001012421)	promoter-TSS (NM_001012421)	-405	NM_001012421	441430	Hs.632663	NM_001012421	ENSG00000183148	ANKRD20A2	-	ankyrin repeat domain 20 family member A2	protein-coding
1.97226-3	chr3	79203990	79204489	+	0	NA	intron (NM_002941, intron 2 of 30)	intron (NM_002941, intron 2 of 30)	-135630	NM_001145845	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding
10.7883	chr9	131145831	131146330	+	0	NA	intron (NM_030914, intron 2 of 4)	intron (NM_030914, intron 2 of 4)	-8820	NR_039815	100616335		NR_039815	ENSG00000283335	MIR219B	MIR2964A|hsa-mir-219b|mir-219b	microRNA 219b	ncRNA
19.9568-3	chr14	75667092	75667591	+	0	NA	Intergenic	L2b|LINE|L2	-23992	NM_006827	10972	Hs.74137	NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
3.18759-14	chr22	32366058	32366557	+	0	NA	Intergenic	Intergenic	-24959	NR_126507	25775	Hs.627602	NM_015372	ENSG00000128254	C22orf24	HSN44A4A	chromosome 22 open reading frame 24	protein-coding
2.41845-11	chr5	14923293	14923792	+	0	NA	Intergenic	Intergenic	-51655	NM_054027	56172	Hs.156727	NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
1.92465-5	chr16	577405	577904	+	0	NA	promoter-TSS (NM_005632)	promoter-TSS (NM_005632)	-202	NM_005632	6650	Hs.632219	NM_005632	ENSG00000103326	CAPN15	SOLH	calpain 15	protein-coding
1.40862-7	chr19	39988961	39989460	+	0	NA	promoter-TSS (NM_203486)	promoter-TSS (NM_203486)	-347	NM_016941	10683	Hs.127792	NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
1.50581-2	chr7	112429831	112430330	+	0	NA	intron (NM_001287497, intron 1 of 5)	CpG	398	NM_022484	64418	Hs.606345	NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
2.60428-11	chr2	71204964	71205463	+	0	NA	promoter-TSS (NM_001115116)	promoter-TSS (NM_001115116)	-362	NM_001115116	79998	Hs.512744	NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
0.371573-20	chr4	8031364	8031863	+	0	NA	intron (NM_001130083, intron 10 of 20)	intron (NM_001130083, intron 10 of 20)	-24505	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
0.409586-34	chr20	23342684	23343183	+	0	NA	intron (NM_022482, intron 1 of 5)	CpG	164	NM_022482	64412	Hs.709462	NM_022482	ENSG00000125812	GZF1	ZBTB23|ZNF336	GDNF inducible zinc finger protein 1	protein-coding
0.974532-3	chr18	10560370	10560869	+	0	NA	Intergenic	Intergenic	34746	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
1.29596-4	chr1	68111515	68112014	+	0	NA	Intergenic	Intergenic	-39096	NM_001199741	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
1.78486	chr7	108210005	108210504	+	0	NA	promoter-TSS (NM_012328)	promoter-TSS (NM_012328)	-42	NM_001287601	168451	Hs.707689	NM_182529	ENSG00000177683	THAP5	-	THAP domain containing 5	protein-coding
3.16953-3	chr5	167955953	167956452	+	0	NA	promoter-TSS (NR_024356)	promoter-TSS (NR_024356)	-380	NR_024356	345630	Hs.166262	NR_024356		FBLL1	-	fibrillarin-like 1	pseudo
1.50581	chr7	22401422	22401921	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-5138	NM_012294	9771	Hs.174768	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
0.840728	chr8	84096290	84096789	+	0	NA	Intergenic	L1PA11|LINE|L1	-219454	NR_122034	103352670	Hs.399852	NR_122034	ENSG00000253898	LINC01419	LVCAT7|TCONS_00014497	long intergenic non-protein coding RNA 1419	ncRNA
2.66001-26	chr1	175656644	175657143	+	0	NA	intron (NM_001328635, intron 1 of 22)	intron (NM_001328635, intron 1 of 22)	55859	NM_003285	7143	Hs.659864	NM_003285	ENSG00000116147	TNR	TN-R	tenascin R	protein-coding
0-4	chr17	27070739	27071238	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-35	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
3.72634-3	chr5	18068820	18069319	+	0	NA	Intergenic	Intergenic	261686	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
7.52027-6	chr9	127905672	127906171	+	0	NA	promoter-TSS (NM_001144877)	promoter-TSS (NM_001144877)	-83	NM_001144877	286205	Hs.59504	NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
18.8941	chr8	63515786	63516285	+	0	NA	intron (NR_130764, intron 3 of 6)	intron (NR_130764, intron 3 of 6)	354534	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding
0.181814-12	chr2	113403010	113403509	+	0	NA	promoter-TSS (NM_005415)	promoter-TSS (NM_005415)	-175	NM_005415	6574	Hs.187946	NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
2.07608-10	chr21	41256964	41257463	+	0	NA	intron (NM_006198, intron 1 of 2)	intron (NM_006198, intron 1 of 2)	17866	NM_006198	5121	Hs.80296	NM_006198	ENSG00000183036	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
2.98432-4	chr8	102257599	102258098	+	0	NA	Intergenic	Intergenic	-39556	NM_001267709	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
4.4855-7	chr3	61378588	61379087	+	0	NA	Intergenic	SVA_B|Other|Other	-141702	NM_001166243	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
0.254883-39	chr7	39559394	39559893	+	0	NA	Intergenic	Intergenic	-46332	NM_020192	57002	Hs.72168	NM_020192	ENSG00000241127	YAE1D1	C7orf36|GK003	Yae1 domain containing 1	protein-coding
0.273344-17	chr17	25620872	25621371	+	0	NA	promoter-TSS (NR_039748)	promoter-TSS (NR_039748)	15	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
1.79799-2	chr1	244281452	244281951	+	0	NA	Intergenic	Intergenic	65194	NM_006352	10472	Hs.69997	NM_006352	ENSG00000179456	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
13.1336-3	chr1	179064489	179064988	+	0	NA	3' UTR (NM_022371, exon 6 of 6)	3' UTR (NM_022371, exon 6 of 6)	13626	NM_022371	64222	Hs.584957	NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
20.5208	chr3	192090396	192090895	+	0	NA	intron (NM_004113, intron 2 of 5)	L2a|LINE|L2	36193	NM_021032	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
2.61219-6	chr1	213073286	213073785	+	0	NA	TTS (NM_014053)	TTS (NM_014053)	41938	NM_014053	28982	Hs.7055	NM_014053	ENSG00000162769	FLVCR1	AXPC1|FLVCR|MFSD7B|PCA|PCARP	feline leukemia virus subgroup C cellular receptor 1	protein-coding
1.79799-9	chr5	158010517	158011016	+	0	NA	Intergenic	SVA_D|Other|Other	-173985	NR_109888	101927697	Hs.483960	NR_109888	ENSG00000276778	LOC101927697	-	uncharacterized LOC101927697	ncRNA
3.7366-3	chr20	49347483	49347982	+	0	NA	promoter-TSS (NM_032521)	promoter-TSS (NM_032521)	-349	NM_032521	84612	Hs.589848	NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
1.22629-14	chr1	159824360	159824859	+	0	NA	exon (NM_001134233, exon 2 of 6)	exon (NM_001134233, exon 2 of 6)	528	NM_001134233	284677	Hs.647718	NM_001134233	ENSG00000188004	C1orf204	-	chromosome 1 open reading frame 204	protein-coding
25.4212	chr1	201474161	201474660	+	0	NA	intron (NM_001193570, intron 1 of 5)	intron (NM_001193570, intron 1 of 5)	1557	NM_001193571	1465	Hs.108080	NM_004078	ENSG00000159176	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286	cysteine and glycine rich protein 1	protein-coding
3.64516	chr16	15115966	15116465	+	0	NA	intron (NM_001324020, intron 12 of 16)	intron (NM_001324020, intron 12 of 16)	33721	NM_001270766	123803	Hs.592045	NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
3.39135-9	chr16	13262116	13262615	+	0	NA	intron (NM_001145204, intron 2 of 4)	MLT1J1|LTR|ERVL-MaLR	266888	NM_001145205	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
1.4813-9	chr6	127875525	127876024	+	0	NA	Intergenic	Intergenic	-22545	NM_001010905	352999	Hs.226268	NM_001010905	ENSG00000184530	C6orf58	LEG1	chromosome 6 open reading frame 58	protein-coding
0.123337-40	chrX	75365506	75366005	+	0	NA	Intergenic	Intergenic	-27009	NM_001300888	51260	Hs.370100	NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
0.851282-7	chr13	42614337	42614836	+	0	NA	intron (NM_001204504, intron 1 of 29)	CpG	414	NM_001204504	160851	Hs.630380	NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
4.25969-14	chr3	75339131	75339630	+	0	NA	Intergenic	SVA_D|Other|Other	75753	NR_049831	100846999		NR_049831	ENSG00000266780	MIR4444-2	-	microRNA 4444-2	ncRNA
8.86057-10	chr11	94469059	94469558	+	0	NA	intron (NR_135096, intron 1 of 6)	intron (NR_135096, intron 1 of 6)	4213	NR_135094	105369438	Hs.568921	NR_135093	ENSG00000255929	LOC105369438	-	uncharacterized LOC105369438	ncRNA
2.22573-2	chr12	101603626	101604125	+	0	NA	5' UTR (NM_145913, exon 1 of 15)	5' UTR (NM_145913, exon 1 of 15)	141	NM_145913	160728	Hs.444536	NM_145913	ENSG00000256870	SLC5A8	AIT|SMCT|SMCT1	solute carrier family 5 member 8	protein-coding
1.59894-17	chr1	68739436	68739935	+	0	NA	Intergenic	Intergenic	-41401	NM_024911	79971	Hs.647659	NM_024911	ENSG00000116729	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
11.549-3	chr6	148859814	148860313	+	0	NA	intron (NM_001346509, intron 9 of 12)	intron (NM_001346509, intron 9 of 12)	29776	NM_001346509	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
4.81486-3	chr1	222417238	222417737	+	0	NA	Intergenic	AluJb|SINE|Alu	303957	NM_024746	79802	Hs.665660	NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
0.0305075-48	chr5	28648138	28648637	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-278590	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
10.2503-2	chr7	145717181	145717680	+	0	NA	Intergenic	Intergenic	-96023	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
15.7675-7	chr2	111825872	111826371	+	0	NA	intron (NM_001142807, intron 16 of 17)	intron (NM_001142807, intron 16 of 17)	47044	NR_122074	400997	Hs.652337	NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
5.36107-5	chr9	116061066	116061565	+	0	NA	promoter-TSS (NM_145051)	promoter-TSS (NM_145051)	5	NM_145051	138065	Hs.729641	NM_145051	ENSG00000165188	RNF183	-	ring finger protein 183	protein-coding
4.17937-12	chr1	237175987	237176486	+	0	NA	Intergenic	Intergenic	-8518	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
5.48214-9	chr14	65230415	65230914	+	0	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	21740	NR_107009	102465841		NR_107009	ENSG00000070182	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
2.95849-4	chr3	181028320	181028819	+	0	NA	intron (NR_075093, intron 2 of 4)	intron (NR_075093, intron 2 of 4)	79044	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
3.58526-11	chr13	114302134	114302633	+	0	NA	TTS (NM_000705)	TTS (NM_000705)	10130	NM_000705	496	Hs.434202	NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting beta subunit	protein-coding
0.809219-5	chr20	35604099	35604598	+	0	NA	Intergenic	SVA_D|Other|Other	-24102	NM_015474	25939	Hs.580681	NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
13.7059	chr1	234349856	234350355	+	0	NA	5' UTR (NM_001300845, exon 1 of 7)	5' UTR (NM_001300845, exon 1 of 7)	148	NM_001300845	148641	Hs.158748	NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
0.491485-25	chr21	37485008	37485507	+	0	NA	intron (NR_040084, intron 1 of 3)	intron (NR_040084, intron 1 of 3)	13681	NR_040084	100133286	Hs.728809	NR_040084	ENSG00000230212	LOC100133286	-	uncharacterized LOC100133286	ncRNA
1.27844-18	chr9	130620449	130620948	+	0	NA	Intergenic	MIR3|SINE|MIR	-3646	NM_001114753	2022	Hs.76753	NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
2.16096-3	chr11	22215182	22215681	+	0	NA	intron (NM_213599, intron 1 of 21)	intron (NM_213599, intron 1 of 21)	709	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
1.45694-2	chr8	60964004	60964503	+	0	NA	Intergenic	Intergenic	229729	NR_135821	767	Hs.654388	NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
31.0018	chr3	157260872	157261371	+	0	NA	promoter-TSS (NM_001099777)	promoter-TSS (NM_001099777)	-12	NR_024016	152078	Hs.259046	NM_001099777	ENSG00000174899	PQLC2L	C3orf55	PQ loop repeat containing 2 like	protein-coding
4.08935-2	chrY	59239919	59240418	+	0	NA	intron (NM_001185183, intron 5 of 6).2	SVA_D|Other|Other	26219	NM_001185183	6845	Hs.24167	NM_005638	ENSG00000124333	VAMP7	SYBL1|TI-VAMP|TIVAMP|VAMP-7	vesicle associated membrane protein 7	protein-coding
0.315171-18	chr16	57023196	57023695	+	0	NA	promoter-TSS (NM_001330552)	promoter-TSS (NM_001330552)	48	NM_001330552	84166	Hs.528836	NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
8.47712-10	chr2	28660347	28660846	+	0	NA	Intergenic	Intergenic	-43057	NR_103831	403150	Hs.562970	NR_103831	ENSG00000229951	FLJ31356	-	uncharacterized protein FLJ31356	ncRNA
1.88425-12	chr17	3273880	3274379	+	0	NA	Intergenic	SVA_D|Other|Other	27575	NM_003553	8387	Hs.278485	NM_003553	ENSG00000180016	OR1E1	HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547	olfactory receptor family 1 subfamily E member 1	protein-coding
0.496351-57	chr1	150607423	150607922	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5574	NM_004436	2029	Hs.632456	NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
2.47952	chr21	41426261	41426760	+	0	NA	intron (NM_001389, intron 29 of 32)	intron (NM_001389, intron 29 of 32)	157848	NR_039917	100616148		NR_039917	ENSG00000263973	MIR4760	-	microRNA 4760	ncRNA
0.772745-11	chr3	140813925	140814424	+	0	NA	intron (NM_080862, intron 2 of 2)	intron (NM_080862, intron 2 of 2)	43930	NM_080862	92369	Hs.655112	NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
2.9243-2	chr17	18086483	18086982	+	0	NA	promoter-TSS (NM_017758)	promoter-TSS (NM_017758)	-135	NM_017758	54890	Hs.744130	NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
4.78862-7	chr17	42844915	42845414	+	0	NA	intron (NM_001318933, intron 2 of 26)	intron (NM_001318933, intron 2 of 26)	8617	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
0.132283-26	chr11	73498884	73499383	+	0	NA	intron (NM_001318500, intron 1 of 5)	CpG	216	NR_134658	51642	Hs.503239	NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
0.695604-6	chr11	131561394	131561893	+	0	NA	intron (NM_001048209, intron 1 of 7)	(CGGGG)n|Simple_repeat|Simple_repeat	-28193	NR_126159	101929637	Hs.730330	NM_207432	ENSG00000224795	NTM-AS1	C11orf39	NTM antisense RNA 1	ncRNA
16.7778-7	chr9	16705164	16705663	+	0	NA	intron (NM_001317940, intron 2 of 5)	intron (NM_001317940, intron 2 of 5)	165373	NM_017637	54796	Hs.656581	NM_017637	ENSG00000173068	BNC2	BSN2	basonuclin 2	protein-coding
0.899095-2	chr2	10091215	10091714	+	0	NA	promoter-TSS (NM_198182)	promoter-TSS (NM_198182)	-328	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
1.60522-10	chr4	182222900	182223399	+	0	NA	Intergenic	Intergenic	-142847	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
0.296531-142	chr6	112244106	112244605	+	0	NA	Intergenic	Intergenic	-49700	NM_002037	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
4.92144-3	chr8	93150566	93151065	+	0	NA	Intergenic	Intergenic	28924	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
6.92504-9	chr1	172864183	172864682	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	155671	NM_005092	8995	Hs.248197	NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	tumor necrosis factor superfamily member 18	protein-coding
6.9897-2	chr3	128639425	128639924	+	0	NA	Intergenic	LTR14B|LTR|ERVK	41341	NR_033426	28976	Hs.567482	NM_014049	ENSG00000177646	ACAD9	NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
1.75874-21	chr13	74703787	74704286	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	4030	NM_007249	11278	Hs.373857	NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	Kruppel like factor 12	protein-coding
0.0217692-22	chr7	150595481	150595980	+	0	NA	Intergenic	Intergenic	46165	NM_001091	26	Hs.647097	NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO	amine oxidase, copper containing 1	protein-coding
2.88193-22	chr3	66270987	66271888	+	0	NA	non-coding (NR_028475, exon 1 of 10)	non-coding (NR_028475, exon 1 of 10)	269	NM_001164796	115286	Hs.379386	NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
2.13249-5	chr16	89237885	89238384	+	0	NA	promoter-TSS (NM_004933)	promoter-TSS (NM_004933)	-29	NM_004933	1013	Hs.148090	NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
0.624821-12	chrX	54384951	54385450	+	0	NA	promoter-TSS (NM_020922)	promoter-TSS (NM_020922)	-762	NM_001002838	65267	Hs.92423	NM_020922	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
0.254883-25	chrX	57618360	57618859	+	0	NA	exon (NM_007157, exon 1 of 1)	exon (NM_007157, exon 1 of 1)	340	NM_007157	158586	Hs.156257	NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger, X-linked, duplicated B	protein-coding
11.1182	chr5	44730994	44731493	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	77652	NR_109864	100506674	Hs.575213	NR_109862		BRCAT54	-	breast cancer-associated transcript 54	ncRNA
17.4715-2	chr12	43492115	43492614	+	0	NA	Intergenic	Intergenic	406346	NR_135028	105369739	Hs.126660	NR_135028	ENSG00000257114	LOC105369739	-	uncharacterized LOC105369739	ncRNA
7.74691-18	chr4	167942643	167943142	+	0	NA	intron (NM_001204354, intron 2 of 9)	intron (NM_001204354, intron 2 of 9)	212685	NM_001204353	50859	Hs.481133	NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3	protein-coding
0.0305075-29	chr9	100263343	100263842	+	0	NA	promoter-TSS (NM_003275)	promoter-TSS (NM_003275)	130	NM_001166116	7111	Hs.404289	NM_003275	ENSG00000136842	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
2.24026-12	chr2	160471870	160472369	+	0	NA	promoter-TSS (NM_001329858)	promoter-TSS (NM_001329858)	-12	NM_001329858	29994	Hs.470369	NM_013450	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain 2B	protein-coding
1.02373-8	chr2	133110006	133110505	+	0	NA	promoter-TSS (NR_135203)	promoter-TSS (NR_135203)	15	NR_135203	339742	Hs.98178	NR_135203		FAM201B	-	family with sequence similarity 201 member B	ncRNA
1.44481-14	chr9	44118555	44119054	+	0	NA	Intergenic	CpG	63915	NR_131213	105500239		NR_131213		XLOC_007697	-	uncharacterized LOC105500239	ncRNA
2.5649-8	chr9	69890013	69890512	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-132478	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
10.9098	chr15	20547090	20547589	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	59342	NR_038836	646096	Hs.448789	NR_038836	ENSG00000259156	CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
5.08638-9	chr3	45596528	45597027	+	0	NA	Intergenic	MIRb|SINE|MIR	-39546	NM_014240	8994	Hs.193370	NM_014240	ENSG00000144791	LIMD1	-	LIM domains containing 1	protein-coding
0.310503-2	chr2	39915266	39915765	+	0	NA	intron (NM_152390, intron 1 of 3)	intron (NM_152390, intron 1 of 3)	22480	NM_152390	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
23.5853-7	chr2	42317486	42317985	+	0	NA	Intergenic	Intergenic	42574	NM_138370	91461	Hs.408542	NM_138370	ENSG00000162878	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
2.05512-21	chr13	115047297	115047796	+	0	NA	exon (NM_080687, exon 2 of 9)	exon (NM_080687, exon 2 of 9)	487	NM_080687	65110	Hs.533855	NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding
5.67031-3	chr7	90618216	90618715	+	0	NA	intron (NM_001287137, intron 8 of 12)	intron (NM_001287137, intron 8 of 12)	-275318	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
0.670192-2	chr17	38646022	38646521	+	0	NA	intron (NM_032865, intron 2 of 12)	MER5A1|DNA|hAT-Charlie	11583	NM_032865	84951	Hs.438292	NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
20.2045-4	chr4	124733184	124733683	+	0	NA	intron (NR_027106, intron 1 of 2)	intron (NR_027106, intron 1 of 2)	38014	NR_027106	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
2.35077-8	chr8	122260987	122261486	+	0	NA	Intergenic	Intergenic	-390350	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
3.48722-9	chr19	45681362	45681861	+	0	NA	promoter-TSS (NM_001270891)	promoter-TSS (NM_001270891)	-110	NM_024108	79090	Hs.466929	NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
0.423927-10	chr19	11641168	11641667	+	0	NA	Intergenic	Intergenic	-1430	NM_016581	51295	Hs.515146	NM_016581	ENSG00000130159	ECSIT	SITPEC	ECSIT signalling integrator	protein-coding
8.15309-4	chr16	75018457	75019332	+	0	NA	exon (NM_001324171, exon 1 of 17)	exon (NM_001324171, exon 1 of 17)	123	NM_030581	79726	Hs.280951	NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
0.963675-7	chr2	177796556	177797055	+	0	NA	Intergenic	Intergenic	-280617	NM_001330249	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
0.629839-8	chr20	5449692	5450191	+	0	NA	Intergenic	Intergenic	-1901	NR_029405	643406	Hs.431161	NM_175877		LOC643406	-	uncharacterized LOC643406	ncRNA
0.296531-148	chr1	181615645	181616144	+	0	NA	intron (NM_001205294, intron 6 of 45)	intron (NM_001205294, intron 6 of 45)	163208	NM_000721	777	Hs.437444	NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
23.4969-2	chr7	83081460	83081959	+	0	NA	intron (NM_001178129, intron 4 of 16)	intron (NM_001178129, intron 4 of 16)	189038	NM_001178129	9723	Hs.528721	NM_012431	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	semaphorin 3E	protein-coding
3.47754-9	chr8	101732865	101733364	+	0	NA	intron (NM_002568, intron 1 of 14)	intron (NM_002568, intron 1 of 14)	1201	NM_002568	26986	Hs.387804	NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
5.62249-15	chr6	32122253	32122752	+	0	NA	promoter-TSS (NR_037172)	promoter-TSS (NR_037172)	-360	NR_037172	100507547	Hs.549204	NR_037169	ENSG00000204314	LOC100507547	-	uncharacterized LOC100507547	ncRNA
32.1042	chr2	40435458	40435957	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	221737	NM_001112800	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
2.83997-7	chr2	198992231	198992730	+	0	NA	intron (NM_006226, intron 5 of 5)	intron (NM_006226, intron 5 of 5)	247341	NR_110267	101927619	Hs.632942	NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
9.1364-18	chr15	46696645	46697144	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	699501	NR_135680	105370802	Hs.447522	NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
2.60428-13	chr13	47127885	47128384	+	0	NA	intron (NM_001164211, intron 1 of 19)	CpG	838	NM_001164211	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
0.777937-5	chr1	159838951	159839450	+	0	NA	Intergenic	Intergenic	-6753	NM_001013661	391123	Hs.647718	NM_001013661	ENSG00000243284	VSIG8	-	V-set and immunoglobulin domain containing 8	protein-coding
8.041-4	chr5	152416341	152416840	+	0	NA	Intergenic	SVA_D|Other|Other	-64681	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
6.92504-14	chr4	17615923	17616422	+	0	NA	promoter-TSS (NM_025205)	promoter-TSS (NM_025205)	-79	NM_025205	80306	Hs.731966	NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
4.01209-17	chr14	100969407	100969906	+	0	NA	intron (NM_024515, intron 4 of 6)	intron (NM_024515, intron 4 of 6)	64751	NM_001159531	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
0.195421-20	chr12	26277735	26278234	+	0	NA	promoter-TSS (NM_030762)	promoter-TSS (NM_030762)	19	NM_030762	79365	Hs.177841	NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
6.03801-12	chrX	152777265	152777764	+	0	NA	Intergenic	Intergenic	-16531	NR_073156	55559	Hs.170835	NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
1.05684-7	chr2	158117733	158118232	+	0	NA	intron (NM_014568, intron 1 of 9)	intron (NM_014568, intron 1 of 9)	3872	NM_001329868	11227	Hs.269027	NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
2.98432-19	chr2	215438707	215439206	+	0	NA	intron (NM_001080500, intron 3 of 3)	intron (NM_001080500, intron 3 of 3)	64050	NR_047698	100885780	Hs.665982	NR_047698	ENSG00000224257	VWC2L-IT1	-	VWC2L intronic transcript 1	ncRNA
0.254883-57	chr6	159179977	159180476	+	0	NA	intron (NM_001318745, intron 11 of 14)	intron (NM_001318745, intron 11 of 14)	5559	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
6.75718-17	chr5	33941612	33942111	+	0	NA	Intergenic	Intergenic	5370	NM_016568	51289	Hs.170146	NM_016568	ENSG00000182631	RXFP3	GPCR135|RLN3R1|RXFPR3|SALPR	relaxin/insulin like family peptide receptor 3	protein-coding
3.74688-7	chr10	132841461	132841960	+	0	NA	Intergenic	Intergenic	-51771	NR_120623	101927489		NR_120623	ENSG00000230098	TCERG1L-AS1	-	TCERG1L antisense RNA 1	ncRNA
4.31798-12	chr6	35295163	35295662	+	0	NA	Intergenic	Intergenic	-14923	NM_177435	5467	Hs.696032	NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
0.731433-6	chr5	179755626	179756125	+	0	NA	intron (NM_005110, intron 6 of 18)	MIRb|SINE|MIR	24512	NM_005110	9945	Hs.696497	NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
1.11259-12	chr16	54228231	54228730	+	0	NA	Intergenic	Intergenic	76311	NR_126340	100996338	Hs.232014	NR_126340		LOC100996338	-	uncharacterized LOC100996338	ncRNA
8.50781-15	chr12	79279206	79279705	+	0	NA	intron (NM_001291901, intron 1 of 9)	L2a|LINE|L2	21006	NM_005639	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
0.47692-24	chr20	17705709	17706208	+	0	NA	intron (NM_001014977, intron 2 of 2)	intron (NM_001014977, intron 2 of 2)	25365	NM_178477	140836	Hs.115366	NM_178477	ENSG00000125888	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
0.510982-29	chr13	108974474	108974973	+	0	NA	Intergenic	Intergenic	52746	NM_006573	10673	Hs.525157	NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	tumor necrosis factor superfamily member 13b	protein-coding
3.37242	chr9	127239954	127240453	+	0	NA	Intergenic	CpG	29496	NM_004959	2516	Hs.495108	NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
11.5989	chr11	112951294	112951793	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	-117361	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
16.517-2	chr5	38181990	38182489	+	0	NA	Intergenic	LTR79|LTR|ERVL	33657	NR_134272	101929745	Hs.374715	NR_134272	ENSG00000248461	LINC02119	-	long intergenic non-protein coding RNA 2119	ncRNA
1.6877-12	chr19	18284306	18284805	+	0	NA	promoter-TSS (NM_006332)	promoter-TSS (NM_006332)	-35	NM_006332	10437	Hs.14623	NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30, lysosomal thiol reductase	protein-coding
3.65523	chr1	115595048	115595547	+	0	NA	intron (NM_001308316, intron 6 of 6)	intron (NM_001308316, intron 6 of 6)	18730	NM_001277991	7252	Hs.406687	NM_000549	ENSG00000134200	TSHB	TSH-B|TSH-BETA	thyroid stimulating hormone beta	protein-coding
0.990869-4	chr14	101640675	101641174	+	0	NA	Intergenic	Intergenic	104676	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	ncRNA
4.60924-2	chr8	64112490	64112989	+	0	NA	intron (NM_001277818, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	31177	NM_001277818	253943	Hs.491861	NM_152758	ENSG00000185728	YTHDF3	-	YTH N6-methyladenosine RNA binding protein 3	protein-coding
0.11441-16	chr20	18447943	18448442	+	0	NA	promoter-TSS (NM_001099407)	promoter-TSS (NM_001099407)	159	NR_104209	10621	Hs.472227	NM_006466	ENSG00000132664	POLR3F	RPC39|RPC6	RNA polymerase III subunit F	protein-coding
0.942041-10	chr8	61789016	61789515	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	91042	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
4.58421-14	chr19	23472139	23472638	+	0	NA	Intergenic	SVA_B|Other|Other	-15335	NR_103741	100132815	Hs.629249	NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
8.79426-8	chr22	21050830	21051329	+	0	NA	Intergenic	Intergenic	-4323	NR_026815	84222	Hs.546454	NM_032262	ENSG00000226287	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
0.0568285-13	chr16	420309	420808	+	0	NA	promoter-TSS (NM_006428)	promoter-TSS (NM_006428)	11	NM_006428	10573	Hs.513230	NM_006428	ENSG00000086504	MRPL28	MAAT1|p15	mitochondrial ribosomal protein L28	protein-coding
1.18045-7	chr20	43594817	43595316	+	0	NA	promoter-TSS (NR_038341)	promoter-TSS (NR_038341)	33	NR_038341	100505826	Hs.196065	NR_038341	ENSG00000227477	STK4-AS1	-	STK4 antisense RNA 1 (head to head)	ncRNA
5.52842-9	chr4	8317278	8317777	+	0	NA	Intergenic	Intergenic	46035	NM_001297559	94031	Hs.479119	NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
15.2143-2	chr17	60801052	60801551	+	0	NA	intron (NM_001288780, intron 8 of 10)	intron (NM_001288780, intron 8 of 10)	82713	NM_001100875	162333	Hs.665663	NM_152598	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane associated ring-CH-type finger 10	protein-coding
6.1261	chr18	31157480	31157979	+	0	NA	promoter-TSS (NM_030632)	promoter-TSS (NM_030632)	-812	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
0.123337-35	chr10	79291046	79291545	+	0	NA	intron (NM_001322832, intron 1 of 27)	MamSINE1|SINE|tRNA	106282	NM_001322832	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
8.9279-6	chr4	90602326	90602825	+	0	NA	Intergenic	MER61C|LTR|ERV1	-154977	NR_045481	644248	Hs.553954	NR_045481	ENSG00000247775	SNCA-AS1	-	SNCA antisense RNA 1	ncRNA
0.530567-7	chr13	105223816	105224315	+	0	NA	Intergenic	Intergenic	-894151	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
0.888424-42	chr4	17723857	17724356	+	0	NA	intron (NM_015688, intron 1 of 17)	intron (NM_015688, intron 1 of 17)	59029	NM_015688	27146	Hs.744951	NM_015688	ENSG00000047662	FAM184B	-	family with sequence similarity 184 member B	protein-coding
1.95179	chr6	16256933	16257432	+	0	NA	intron (NM_006877, intron 4 of 8)	MER21C|LTR|ERVL	18371	NM_006877	2766	Hs.484741	NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
7.32828-10	chr8	28593121	28593620	+	0	NA	intron (NR_073468, intron 2 of 4)	L1M4|LINE|L1	34380	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
20.1011-4	chr10	112439394	112439893	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	35488	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
0.136762-16	chr15	31283764	31284263	+	0	NA	promoter-TSS (NM_017762)	promoter-TSS (NM_017762)	-206	NM_017762	54893	Hs.30141	NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
2.36572-10	chr5	133340717	133341216	+	0	NA	promoter-TSS (NR_036625)	promoter-TSS (NR_036625)	-142	NM_003374	7416	Hs.519320	NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
0.609802-12	chr9	136659707	136660206	+	0	NA	intron (NM_001134398, intron 12 of 29)	intron (NM_001134398, intron 12 of 29)	-54879	NM_007101	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
4.50997-5	chr1	68151876	68152375	+	0	NA	exon (NM_001924, exon 3 of 4)	exon (NM_001924, exon 3 of 4)	1265	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
10.8991-3	chr16	50318053	50318552	+	0	NA	intron (NM_001286057, intron 1 of 18)	intron (NM_001286057, intron 1 of 18)	-3521	NM_001114	113	Hs.513578	NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
1.33122-13	chr18	23515182	23515681	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	155180	NM_005637	6760	Hs.129261	NM_005637	ENSG00000141380	SS18	SSXT|SYT	SS18, nBAF chromatin remodeling complex subunit	protein-coding
13.3442-7	chr7	95688227	95688726	+	0	NA	intron (NM_001278422, intron 13 of 15)	MER82|DNA|TcMar-Tigger	160592	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
7.90485	chr2	240323030	240323529	+	0	NA	promoter-TSS (NR_135577)	promoter-TSS (NR_135577)	-135	NR_135576	101928111	Hs.534680	NR_135575	ENSG00000222020	LOC101928111	-	uncharacterized LOC101928111	ncRNA
1.54902	chr14	37025160	37025659	+	0	NA	Intergenic	Intergenic	26410	NM_014360	26257	Hs.234763	NM_014360	ENSG00000136327	NKX2-8	NKX2.8|NKX2H|Nkx2-9	NK2 homeobox 8	protein-coding
10.4335	chr15	73127637	73128136	+	0	NA	Intergenic	Intergenic	-51760	NR_023318	83440	Hs.562587	NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
0.400052-15	chr10	126745632	126746131	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-24442	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
10.4528-5	chr6	28887107	28887606	+	0	NA	intron (NM_006510, intron 3 of 7)	intron (NM_006510, intron 3 of 7)	4412	NM_006510	5987	Hs.440382	NM_006510	ENSG00000204713	TRIM27	RFP|RNF76	tripartite motif containing 27	protein-coding
3.88277-4	chr21	35220749	35221248	+	0	NA	intron (NM_001331010, intron 28 of 38)	intron (NM_001331010, intron 28 of 38)	67160	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5O	ATPO|HMC08D05|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
3.28827-2	chr4	103996734	103997233	+	0	NA	intron (NM_001300754, intron 1 of 10)	MLT1J2|LTR|ERVL-MaLR	947	NM_001300756	133308	Hs.546482	NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
3.32547-7	chr1	3692398	3692897	+	0	NA	TTS (NM_001288583)	TTS (NM_001288583)	3296	NM_001163724	388588	Hs.22047	NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
0.447935	chr1	94082528	94083027	+	0	NA	intron (NM_001261408, intron 5 of 13)	intron (NM_001261408, intron 5 of 13)	-3075	NM_001261410	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
0.931265-2	chr7	63767768	63768267	+	0	NA	Intergenic	Intergenic	-6234	NM_001170905	728927	Hs.386162	NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
0.649968-29	chr2	114040507	114041006	+	0	NA	Intergenic	Intergenic	-4258	NM_013952	7849	Hs.469728	NM_003466	ENSG00000125618	PAX8	-	paired box 8	protein-coding
0.540393-33	chr1	201368247	201368746	+	0	NA	5' UTR (NM_005558, exon 1 of 10)	5' UTR (NM_005558, exon 1 of 10)	173	NM_005558	3898	Hs.519035	NM_005558	ENSG00000159166	LAD1	LadA	ladinin 1	protein-coding
3.41035-8	chr3	3842234	3842733	+	0	NA	intron (NM_020873, intron 1 of 1)	CpG	1368	NM_020873	57633	Hs.163244	NM_020873	ENSG00000175928	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
3.16953-5	chr6	3309612	3310111	+	0	NA	intron (NM_001286455, intron 4 of 9)	intron (NM_001286455, intron 4 of 9)	50699	NM_001128592	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
2.54925-7	chr16	66785428	66785927	+	0	NA	promoter-TSS (NR_136658)	promoter-TSS (NR_136658)	22	NR_133569	106699570	Hs.513658	NR_133569	ENSG00000246777	LOC106699570	-	uncharacterized LOC106699570	ncRNA
1.18045-15	chr3	76615144	76615643	+	0	NA	Intergenic	Intergenic	-473901	NM_002942	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
12.2621	chr16	89509721	89510220	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	12644	NR_110932	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
2.94992	chr13	73527673	73528172	+	0	NA	intron (NM_006346, intron 14 of 17)	L1PBb|LINE|L1	-101192	NM_001286818	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
5.37602-9	chr7	23636736	23637235	+	0	NA	promoter-TSS (NM_138771)	promoter-TSS (NM_138771)	-13	NM_138771	90693	Hs.232296	NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
18.1531-3	chr1	233771643	233772142	+	0	NA	intron (NM_002245, intron 1 of 2)	L2a|LINE|L2	11994	NR_039625	100616390		NR_039625	ENSG00000265744	MIR4427	-	microRNA 4427	ncRNA
2.80669-6	chr15	74665936	74666435	+	0	NA	Intergenic	CpG	-6104	NM_000781	1583	Hs.303980	NM_000781	ENSG00000140459	CYP11A1	CYP11A|CYPXIA1|P450SCC	cytochrome P450 family 11 subfamily A member 1	protein-coding
1.15771-34	chr20	30619190	30619689	+	0	NA	3' UTR (NM_080625, exon 9 of 9)	3' UTR (NM_080625, exon 9 of 9)	-20552	NM_001172131	3055	Hs.655210	NM_002110	ENSG00000101336	HCK	JTK9|p59Hck|p61Hck	HCK proto-oncogene, Src family tyrosine kinase	protein-coding
0.213631-24	chr3	50306074	50306573	+	0	NA	promoter-TSS (NM_001290061)	promoter-TSS (NM_001290061)	-104	NM_001290060	7869	Hs.82222	NM_004636	ENSG00000012171	SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	semaphorin 3B	protein-coding
9.50782-17	chr18	65053143	65053642	+	0	NA	Intergenic	Intergenic	-130391	NR_033921	643542	Hs.652901	NR_033921	ENSG00000265533	LOC643542	-	uncharacterized LOC643542	ncRNA
13.019-4	chr17	65042439	65042938	+	0	NA	intron (NM_000727, intron 1 of 3)	intron (NM_000727, intron 1 of 3)	2036	NM_000727	786	Hs.147989	NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
1.53663-24	chr6	126548862	126549361	+	0	NA	Intergenic	Intergenic	-105349	NR_049880	100847016		NR_049880	ENSG00000266721	MIR5695	-	microRNA 5695	ncRNA
7.52027-3	chr18	13299927	13300426	+	0	NA	intron (NM_181481, intron 1 of 5)	intron (NM_181481, intron 1 of 5)	22072	NM_181481	753	Hs.731853	NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
15.3165	chr1	220537116	220537615	+	0	NA	Intergenic	Intergenic	-91522	NM_012414	25782	Hs.654849	NM_012414	ENSG00000118873	RAB3GAP2	RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
8.01343-14	chr4	128553785	128554502	+	0	NA	promoter-TSS (NM_015693)	promoter-TSS (NM_015693)	56	NM_015693	27152	Hs.391481	NM_015693	ENSG00000164066	INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
1.30182	chr1	145471751	145472250	+	0	NA	intron (NM_001039888, intron 2 of 3)	intron (NM_001039888, intron 2 of 3)	1492	NM_001039888	284615	Hs.620591	NM_001039888	ENSG00000272031	ANKRD34A	ANKRD34	ankyrin repeat domain 34A	protein-coding
0.695604-11	chr1	246917067	246917566	+	0	NA	intron (NM_016002, intron 5 of 11)	HERVIP10F-int|LTR|ERV1	29938	NM_016002	51097	Hs.498397	NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
4.67246	chr15	31927879	31928378	+	0	NA	intron (NM_001329907, intron 4 of 10)	intron (NM_001329907, intron 4 of 10)	234747	NM_130901	161725	Hs.355236	NM_130901	ENSG00000169918	OTUD7A	C15orf16|C16ORF15|CEZANNE2|OTUD7	OTU deubiquitinase 7A	protein-coding
0.376307-41	chr7_gl000195_random	78844	79343	+	0	NA	intron (NM_001347682, intron 1 of 3)	L1PA11|LINE|L1	7626	NM_001322036	102724951	Hs.743984	NM_001322036	ENSG00000276077	LOC102724951	-	uncharacterized LOC102724951	protein-coding
1.29596-15	chr16	15187939	15188438	+	0	NA	promoter-TSS (NM_001301064)	promoter-TSS (NM_001301064)	4	NM_001301064	54700	Hs.460078	NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
17.167-3	chr3	156343838	156344337	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-48118	NM_015508	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
4.08935-5	chr5	6190912	6191411	+	0	NA	Intergenic	LTR33|LTR|ERVL	146244	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
4.50997-7	chr3	112970557	112971056	+	0	NA	TTS (NM_001301867)	TTS (NM_001301867)	39462	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
0.268721-58	chr5	175298433	175298932	+	0	NA	5' UTR (NM_001008220, exon 1 of 4)	5' UTR (NM_001008220, exon 1 of 4)	181	NM_001008220	10814	Hs.193235	NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
1.12946-25	chr8	58907376	58907875	+	0	NA	intron (NM_147189, intron 1 of 4)	CpG	512	NM_147189	90362	Hs.154652	NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
14.8017-3	chr12	2842678	2843177	+	0	NA	Intergenic	Intergenic	37908	NR_033958	283440	Hs.658536	NR_033958	ENSG00000255669	LOC283440	-	uncharacterized LOC283440	ncRNA
1.37869-47	chr11	66049822	66050321	+	0	NA	intron (NR_073078, intron 2 of 5)	CpG	4399	NR_073079	254263	Hs.437072	NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
4.19075-16	chr12	93792841	93793340	+	0	NA	non-coding (NR_104005, exon 5 of 5)	non-coding (NR_104005, exon 5 of 5)	20764	NM_001301023	11163	Hs.506325	NM_019094	ENSG00000173598	NUDT4	DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix hydrolase 4	protein-coding
3.67543-3	chr14	100150231	100150730	+	0	NA	promoter-TSS (NM_006668)	promoter-TSS (NM_006668)	-275	NM_006668	10858	Hs.25121	NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
87.5449	chr8	62065984	62066483	+	0	NA	Intergenic	Intergenic	-134292	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
10.7469-2	chr5	1011117	1011616	+	0	NA	intron (NM_001271082, intron 3 of 10)	Charlie18a|DNA|hAT-Charlie	2289	NM_001271082	85409	Hs.240951	NM_033120	ENSG00000145506	NKD2	Naked2	naked cuticle homolog 2	protein-coding
0.716041-11	chr11	107768921	107769420	+	0	NA	Intergenic	Intergenic	-30031	NM_017516	54734	Hs.354906	NM_017516	ENSG00000179331	RAB39A	RAB39	RAB39A, member RAS oncogene family	protein-coding
14.9894-2	chr5	1221158	1221657	+	0	NA	exon (NM_001003841, exon 11 of 12)	exon (NM_001003841, exon 11 of 12)	-4063	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
0.639892-8	chr1	23881308	23881807	+	0	NA	Intergenic	CpG	4728	NM_002167	3399	Hs.76884	NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3, HLH protein	protein-coding
8.41638-3	chr8	143190817	143191316	+	0	NA	Intergenic	Intergenic	-66634	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
10.2549-2	chr12	49236638	49237137	+	0	NA	intron (NM_004818, intron 3 of 16)	SVA_D|Other|Other	9070	NM_004818	9416	Hs.130098	NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
2.77366-9	chr1	222403087	222403586	+	0	NA	Intergenic	L2c|LINE|L2	318108	NM_024746	79802	Hs.665660	NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
1.36083-13	chr3	195923344	195923843	+	0	NA	TTS (NR_135617)	TTS (NR_135617)	14707	NM_001039617	131540	Hs.111591	NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type containing 19	protein-coding
3.56547-4	chr13	100622560	100623059	+	0	NA	exon (NM_033132, exon 1 of 2)	exon (NM_033132, exon 1 of 2)	1369	NM_033132	85416	Hs.508570	NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
9.87163-14	chr4	148975324	148975823	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	271827	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
22.652	chr3	72389697	72390196	+	0	NA	Intergenic	Intergenic	105828	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
0.25028-27	chr14	23288722	23289221	+	0	NA	promoter-TSS (NM_001126106)	promoter-TSS (NM_001126106)	49	NM_001126106	9056	Hs.513147	NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
4.20216	chr5	65236680	65237179	+	0	NA	intron (NM_001006600, intron 1 of 23)	SVA_D|Other|Other	4472	NR_028474	100303749	Hs.608060	NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
15.7349-4	chr6	158969418	158969917	+	0	NA	intron (NM_020823, intron 1 of 16)	intron (NM_020823, intron 1 of 16)	12199	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
0.296531-118	chr9_gl000199_random	70565	71064	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
13.279-4	chr10	63835489	63835988	+	0	NA	intron (NM_032199, intron 8 of 9)	intron (NM_032199, intron 8 of 9)	26768	NM_001244638	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
17.9048-4	chr4	163036412	163036911	+	0	NA	intron (NM_020116, intron 1 of 15)	UCON24|Unknown|Unknown	48525	NM_001128427	56884	Hs.32452	NM_020116	ENSG00000168843	FSTL5	-	follistatin like 5	protein-coding
1.00727-19	chr11	34380471	34380970	+	0	NA	Intergenic	Intergenic	-1165	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
18.6967	chr8	134115027	134115526	+	0	NA	promoter-TSS (NM_001282964)	promoter-TSS (NM_001282964)	34	NM_001282965	6503	Hs.75367	NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
0.0744648-13	chr11	96457151	96457650	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	215811	NR_135097	105369443	Hs.599377	NR_135097	ENSG00000256684	LOC105369443	-	uncharacterized LOC105369443	ncRNA
5.14279-2	chr2	241499550	241500049	+	0	NA	5' UTR (NM_001033575, exon 1 of 3)	5' UTR (NM_001033575, exon 1 of 3)	328	NM_001033575	285193	Hs.369297	NM_001033575	ENSG00000188542	DUSP28	DUSP26|VHP	dual specificity phosphatase 28	protein-coding
0.329203-4	chr17	61912124	61912623	+	0	NA	intron (NM_001330440, intron 5 of 12)	MER91B|DNA|hAT-Tip100	3715	NM_001330440	6603	Hs.250581	NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
0.501223-10	chr11	43304430	43304929	+	0	NA	Intergenic	Intergenic	-13760	NR_033868	399881	Hs.446761	NR_033868	ENSG00000251557	HNRNPKP3	-	heterogeneous nuclear ribonucleoprotein K pseudogene 3	pseudo
0.390538-19	chr7	33101642	33102141	+	0	NA	intron (NM_001002009, intron 1 of 9)	intron (NM_001002009, intron 1 of 9)	518	NM_001002010	51251	Hs.487933	NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
22.2841	chr9	107581988	107582487	+	0	NA	exon (NM_005502, exon 21 of 50)	exon (NM_005502, exon 21 of 50)	56215	NR_130759	55335	Hs.429294	NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
3.22393-14	chr2	223170676	223171175	+	0	NA	TTS (NM_153038)	TTS (NM_153038)	-7210	NM_181459	5077	Hs.42146	NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|WS1|WS3	paired box 3	protein-coding
4.31798-17	chr11	82868082	82868581	+	0	NA	5' UTR (NM_015885, exon 1 of 16)	5' UTR (NM_015885, exon 1 of 16)	194	NM_001346415	51585	Hs.128959	NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
0.25028-36	chr11	110436387	110436886	+	0	NA	Intergenic	Intergenic	135975	NM_004109	2230	Hs.744	NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
6.36388-4	chr11	65838550	65839049	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	975	NM_018026	55690	Hs.644326	NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
12.2841	chr17	75696645	75697144	+	0	NA	Intergenic	Intergenic	27747	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
15.4363-3	chr7	1733058	1733557	+	0	NA	Intergenic	Intergenic	-15491	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
15.784-2	chr21	40337930	40338429	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	11521	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
0.291884-15	chr21	38445258	38445757	+	0	NA	promoter-TSS (NM_001320703)	promoter-TSS (NM_001320703)	23	NM_001320703	7267	Hs.368214	NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
1.45694-8	chr9	131485944	131486443	+	0	NA	promoter-TSS (NR_046240)	promoter-TSS (NR_046240)	215	NM_001318020	84885	Hs.133122	NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type containing 12	protein-coding
0.856568-23	chr19	5037723	5038222	+	0	NA	intron (NM_015015, intron 3 of 22)	intron (NM_015015, intron 3 of 22)	68848	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding
0.0877392-19	chr5	373668	374167	+	0	NA	intron (NM_020731, intron 3 of 11)	CpG	69358	NR_126522	116349	Hs.446702	NM_138464	ENSG00000221990	EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
14.1341	chr6	23634284	23634783	+	0	NA	Intergenic	Intergenic	-491881	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
7.61954-6	chr8	67751819	67752318	+	0	NA	intron (NM_001033578, intron 10 of 16)	intron (NM_001033578, intron 10 of 16)	-30916	NM_173518	157777	Hs.437006	NM_173518	ENSG00000178460	MCMDC2	C8orf45	minichromosome maintenance domain containing 2	protein-coding
0.589858-29	chr13	70854293	70854792	+	0	NA	Intergenic	L1MEb|LINE|L1	-171917	NM_020866	57626	Hs.508201	NM_020866	ENSG00000150361	KLHL1	MRP2	kelch like family member 1	protein-coding
0.145735-27	chr3	111697508	111698007	+	0	NA	promoter-TSS (NM_001272069)	promoter-TSS (NM_001272069)	34	NM_018394	55347	Hs.477115	NM_018394	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10	protein-coding
1.42065-4	chr1	108419616	108420115	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-19980	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
0.438316-17	chr17	30607963	30608462	+	0	NA	intron (NM_138328, intron 2 of 8)	intron (NM_138328, intron 2 of 8)	15017	NM_001330181	162494	Hs.655027	NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
15.3313	chr2	176470736	176471235	+	0	NA	Intergenic	Intergenic	396088	NM_001305009	80856	Hs.209561	NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
0.00434512-2	chr14	64579981	64580480	+	0	NA	exon (NM_015180, exon 66 of 115)	exon (NM_015180, exon 66 of 115)	-18387	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
0.685421-9	chr2	180871436	180871935	+	0	NA	promoter-TSS (NM_020943)	promoter-TSS (NM_020943)	95	NM_020943	57703	Hs.311363	NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
11.107-2	chr8	8915426	8915925	+	0	NA	Intergenic	L2a|LINE|L2	9720	NR_039804	100616350		NR_039804	ENSG00000263407	MIR4660	-	microRNA 4660	ncRNA
2.73273-8	chr15	41708795	41709294	+	0	NA	promoter-TSS (NM_015138)	promoter-TSS (NM_015138)	-258	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
0.93665-3	chr17	19610813	19611312	+	0	NA	exon (NM_001099646, exon 8 of 17)	exon (NM_001099646, exon 8 of 17)	8981	NR_135625	146802	Hs.126830	NM_152908	ENSG00000180638	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	solute carrier family 47 member 2	protein-coding
0.070049-53	chr7	140192779	140193278	+	0	NA	Intergenic	Intergenic	-13659	NM_013446	23608	Hs.744883	NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
10.013-4	chr20	34364349	34364848	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	4675	NM_016436	51230	Hs.517044	NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
2.54925-6	chr2	230580378	230580877	+	0	NA	Intergenic	Intergenic	-1341	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
0.00434512-31	chr6	150225286	150225785	+	0	NA	intron (NR_045127, intron 2 of 2)	intron (NR_045127, intron 2 of 2)	-8340	NM_001243328	135250	Hs.511818	NM_139165	ENSG00000164520	RAET1E	LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7	retinoic acid early transcript 1E	protein-coding
1.64944-17	chr4	169465785	169466284	+	0	NA	intron (NM_016081, intron 2 of 20)	intron (NM_016081, intron 2 of 20)	47817	NM_001166108	23022	Hs.151220	NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
1.42065-22	chr17	72186232	72186731	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-13314	NM_001035258	6169	Hs.380953	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
0.599818-34	chr21	33650914	33651413	+	0	NA	exon (NM_018944, exon 1 of 5)	exon (NM_018944, exon 1 of 5)	213	NM_018944	54069	Hs.190518	NM_018944	ENSG00000159055	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding
8.32683-4	chr5	6674498	6674997	+	0	NA	Intergenic	Intergenic	33077	NR_103771	100505625	Hs.550028	NR_103771	ENSG00000248677	LINC02102	-	long intergenic non-protein coding RNA 2102	ncRNA
1.88425-20	chr8	142083062	142083561	+	0	NA	Intergenic	Intergenic	-55409	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
1.4691-2	chr5	147754226	147754725	+	0	NA	intron (NR_105057, intron 2 of 4)	intron (NR_105057, intron 2 of 4)	8938	NR_105057	102546294	Hs.660461	NR_105057	ENSG00000247199	LOC102546294	-	uncharacterized LOC102546294	ncRNA
9.20819-9	chr14	106854783	106855282	+	0	NA	Intergenic	CpG	-83413	NR_027457	338005	Hs.322826	NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
0.296531-115	chr9_gl000199_random	55941	56440	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
1.0513-5	chr10	23727658	23728157	+	0	NA	promoter-TSS (NM_001145373)	promoter-TSS (NM_001145373)	-291	NM_001145373	220213	Hs.499042	NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
1.37869-15	chr20	62612178	62612677	+	0	NA	promoter-TSS (NM_012469)	promoter-TSS (NM_012469)	-4	NM_012469	24148	Hs.31334	NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
0.0744648-28	chr2	182551404	182551903	+	0	NA	Intergenic	Intergenic	-6261	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
2.51812-9	chr4	4544505	4545004	+	0	NA	promoter-TSS (NM_001346282)	promoter-TSS (NM_001346282)	-681	NM_001346282	53407	Hs.584913	NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
4.28291-6	chr12	11652808	11653307	+	0	NA	Intergenic	Intergenic	-47907	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
10.0393	chr7	73210920	73211419	+	0	NA	Intergenic	SVA_D|Other|Other	-26569	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
12.7737-4	chr11	33497430	33497929	+	0	NA	Intergenic	Intergenic	-66198	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
2.58061-19	chr8	84061837	84062336	+	0	NA	Intergenic	MER61D|LTR|ERV1	237747	NR_134295	101927141	Hs.128557	NR_134295	ENSG00000254394	LOC101927141	-	uncharacterized LOC101927141	ncRNA
2.54925-11	chr8	41304905	41305404	+	0	NA	Intergenic	Intergenic	-42927	NM_016099	51125	Hs.654773	NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
7.23538-6	chr14	74036291	74036790	+	0	NA	exon (NM_006821, exon 1 of 3)	exon (NM_006821, exon 1 of 3)	777	NM_006821	10965	Hs.446685	NM_006821	ENSG00000119673	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
9.87163-3	chr20	31820932	31821431	+	0	NA	Intergenic	Intergenic	-2621	NM_001243193	51297	Hs.211092	NM_016583	ENSG00000198183	BPIFA1	LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5	BPI fold containing family A member 1	protein-coding
4.97573	chr5	133328082	133328581	+	0	NA	intron (NM_003374, intron 2 of 8)	intron (NM_003374, intron 2 of 8)	12326	NR_036624	7416	Hs.519320	NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
1.29596-14	chr9	111695813	111696312	+	0	NA	promoter-TSS (NM_017832)	promoter-TSS (NM_017832)	550	NM_003640	8518	Hs.494738	NM_003640	ENSG00000070061	IKBKAP	DYS|ELP1|FD|IKAP|IKI3|TOT1	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	protein-coding
0.79355-22	chr20	3748825	3749324	+	0	NA	promoter-TSS (NM_001039140)	promoter-TSS (NM_001039140)	-39	NR_047675	54976	Hs.274422	NM_017874	ENSG00000101220	C20orf27	-	chromosome 20 open reading frame 27	protein-coding
1.43271-26	chr12	126822002	126822501	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-104776	NR_130748	100128554	Hs.408255	NR_015398	ENSG00000214043	LOC100128554	-	uncharacterized LOC100128554	ncRNA
2.13249	chr8	22224441	22224940	+	0	NA	promoter-TSS (NM_001128431)	promoter-TSS (NM_001128431)	-72	NM_015359	23516	Hs.491232	NM_015359	ENSG00000104635	SLC39A14	HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
0.472076-9	chr14	65537029	65537528	+	0	NA	intron (NM_197957, intron 3 of 3)	intron (NM_197957, intron 3 of 3)	-19358	NR_045122	100506321	Hs.711267	NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
0.154727-12	chr22	41681757	41682256	+	0	NA	promoter-TSS (NM_001278651)	promoter-TSS (NM_001278651)	15	NM_001278651	5905	Hs.183800	NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
2.61219-21	chr6	39134153	39134652	+	0	NA	Intergenic	Intergenic	-51440	NM_018322	55776	Hs.58382	NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
3.29754-4	chr7	140771647	140772146	+	0	NA	Intergenic	Intergenic	-2136	NM_001195278	100507421	Hs.283851	NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
0.150229-12	chr4	107122398	107122897	+	0	NA	intron (NM_001163436, intron 20 of 25)	intron (NM_001163436, intron 20 of 25)	-114120	NM_001142415	9255	Hs.591680	NM_004757	ENSG00000164022	AIMP1	EMAP2|EMAPII|HLD3|SCYE1|p43	aminoacyl tRNA synthetase complex interacting multifunctional protein 1	protein-coding
6.94649-8	chr21	14745526	14746025	+	0	NA	Intergenic	REP522|Satellite|telo	33006	NR_036164	100423018		NR_036164	ENSG00000266211	MIR3156-3	mir-3156-3	microRNA 3156-3	ncRNA
8.12479-3	chr13	113863473	113863972	+	0	NA	promoter-TSS (NM_001320655)	promoter-TSS (NM_001320655)	-97	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
2.13249-19	chr15	41233731	41234230	+	0	NA	Intergenic	CpG	-11367	NM_024111	79094	Hs.155569	NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
1.53663-40	chr8	118874215	118874714	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	249594	NM_000127	2131	Hs.492618	NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
0.409586-35	chr8	24245071	24245570	+	0	NA	non-coding (NR_125808, exon 2 of 6)	non-coding (NR_125808, exon 2 of 6)	3522	NM_001145272	27299	Hs.521459	NM_014479	ENSG00000134028	ADAMDEC1	M12.219	ADAM like decysin 1	protein-coding
1.64944-9	chr6	138897405	138897904	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-3986	NM_020464	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
74.8812	chr5	10485155	10485654	+	0	NA	Intergenic	Intergenic	7255	NR_106747	102465138		NR_106747	ENSG00000277073	MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
1.36677-13	chr8	127851508	127852007	+	0	NA	Intergenic	Intergenic	-173642	NR_045262	100750225	Hs.571530	NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1	prostate cancer associated transcript 1 (non-protein coding)	ncRNA
26.4975-5	chr7	122736370	122736869	+	0	NA	Intergenic	Intergenic	-100865	NM_016945	50833	Hs.272395	NM_016945	ENSG00000128519	TAS2R16	T2R16	taste 2 receptor member 16	protein-coding
0.452752-6	chr22	21600997	21601496	+	0	NA	Intergenic	Intergenic	-35468	NR_024583	29797	Hs.396963	NM_001029950		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin like 8, pseudogene	pseudo
5.70248-5	chr9	10173425	10173924	+	0	NA	intron (NM_002839, intron 3 of 45)	Tigger12A|DNA|TcMar-Tigger	374282	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
2.9243-15	chr13	37855076	37855575	+	0	NA	Intergenic	SVA_D|Other|Other	-175524	NM_145203	122011	Hs.512897	NM_145203	ENSG00000180138	CSNK1A1L	CK1	casein kinase 1 alpha 1 like	protein-coding
5.55955-6	chr4	7325666	7326165	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	13738	NR_039961	100616471		NR_039961	ENSG00000264658	MIR4798	-	microRNA 4798	ncRNA
2.94992-6	chrX	70864195	70864694	+	0	NA	intron (NR_001568, intron 1 of 3)	SVA_B|Other|Other	22274	NR_136576	100129291	Hs.558667	NR_136576	ENSG00000237265	LOC100129291	-	chromosome X open reading frame 49 pseudogene	pseudo
22.815-4	chr2	202003639	202004138	+	0	NA	3' UTR (NM_001308043, exon 5 of 5)	3' UTR (NM_001308043, exon 5 of 5)	-1110	NM_001202515	8837	Hs.390736	NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD like apoptosis regulator	protein-coding
0.0612309-16	chr1	12196860	12197359	+	0	NA	intron (NM_001281430, intron 12 of 13)	SVA_B|Other|Other	-29891	NR_107000	102465836		NR_107000	ENSG00000028137	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
0.296531-3	chr7	134530190	134530689	+	0	NA	intron (NM_033157, intron 2 of 14)	L2|LINE|L2	-45712	NM_033140	800	Hs.490203	NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
0.550241-9	chr2	2336837	2337336	+	0	NA	Intergenic	Intergenic	-2001	NM_015025	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
5.98599-2	chr6	146285982	146286481	+	0	NA	promoter-TSS (NM_001042683)	promoter-TSS (NM_001042683)	-998	NM_001042683	257218	Hs.723297	NM_173082	ENSG00000146414	SHPRH	bA545I5.2	SNF2 histone linker PHD RING helicase	protein-coding
1.83096-6	chr5	8464878	8465377	+	0	NA	Intergenic	Intergenic	4089	NR_039663	100616142		NR_039663	ENSG00000247516	MIR4458	mir-4458	microRNA 4458	ncRNA
0.199966-15	chr4	148279595	148280094	+	0	NA	Intergenic	SVA_D|Other|Other	-122225	NR_045958	1909	Hs.183713	NM_001957	ENSG00000151617	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR	endothelin receptor type A	protein-coding
1.73277-19	chr11	3862728	3863227	+	0	NA	promoter-TSS (NM_001665)	promoter-TSS (NM_001665)	-764	NM_001665	391	Hs.501728	NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
4.08935-11	chr6	149226096	149226595	+	0	NA	intron (NM_005715, intron 2 of 7)	intron (NM_005715, intron 2 of 7)	59475	NR_038408	100128176	Hs.557541	NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
1.39063-18	chr21	39038975	39039474	+	0	NA	intron (NM_002240, intron 3 of 3)	SVA_A|Other|Other	246623	NM_130438	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
13.83	chr12	117879457	117879956	+	0	NA	Intergenic	Intergenic	-80099	NM_000620	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
12.9328	chr12	115251007	115251506	+	0	NA	Intergenic	Intergenic	-129287	NM_016569	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
0.127808-27	chr5	28576065	28576564	+	0	NA	Intergenic	L1PA16|LINE|L1	-288542	NR_134265	105374698	Hs.124461	NR_134265	ENSG00000249785	LINC02103	-	long intergenic non-protein coding RNA 2103	ncRNA
8.23909-10	chr18	59993098	59993597	+	0	NA	intron (NM_003839, intron 1 of 9)	CpG	827	NM_001270950	8792	Hs.204044	NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER	TNF receptor superfamily member 11a	protein-coding
0.409586-8	chr22	49631741	49632240	+	0	NA	Intergenic	Intergenic	305124	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
0.540393	chr9	124082281	124082780	+	0	NA	intron (NM_001127667, intron 11 of 18)	intron (NM_001127667, intron 11 of 18)	20451	NM_000177	2934	Hs.522373	NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
11.1634-6	chr6	169237885	169238384	+	0	NA	Intergenic	Intergenic	126343	NR_136250	105378146	Hs.343631	NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
0.277972-4	chr1	206299230	206299729	+	0	NA	Intergenic	Intergenic	-10832	NM_001007544	440712	Hs.662248	NM_001007544	ENSG00000263961	C1orf186	RHEX	chromosome 1 open reading frame 186	protein-coding
12.2915-5	chr8	142274166	142274665	+	0	NA	Intergenic	Intergenic	-9687	NM_001286646	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
9.20819-16	chr6	53948020	53948519	+	0	NA	intron (NM_001281746, intron 1 of 11)	intron (NM_001281746, intron 1 of 11)	-27947	NM_001281747	90523	Hs.449276	NM_138569	ENSG00000146147	MLIP	C6orf142|CIP	muscular LMNA interacting protein	protein-coding
2.02732-15	chr7	69062948	69063447	+	0	NA	promoter-TSS (NR_108105)	promoter-TSS (NR_108105)	-708	NM_001127232	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
2.47184-24	chr11	76303439	76303938	+	0	NA	Intergenic	Intergenic	77356	NM_005512	2615	Hs.151641	NM_005512	ENSG00000137507	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
3.36299	chr8	61951082	61951581	+	0	NA	Intergenic	Intergenic	-71024	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
11.7134	chr13	69817472	69817971	+	0	NA	intron (NR_125752, intron 1 of 3)	ERVL-int|LTR|ERVL	21243	NR_125752	103689913	Hs.585628	NR_125752		LINC00383	LINC00401	long intergenic non-protein coding RNA 383	ncRNA
3.76751-2	chrX	134654299	134654798	+	0	NA	promoter-TSS (NM_182540)	promoter-TSS (NM_182540)	-7	NM_182540	203522	Hs.496829	NM_182540	ENSG00000165359	INTS6L	DDX26B	integrator complex subunit 6 like	protein-coding
13.3442-6	chr8	61720221	61720720	+	0	NA	intron (NM_017780, intron 6 of 37)	intron (NM_017780, intron 6 of 37)	66652	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
9.74694-4	chr15	83349327	83349826	+	0	NA	intron (NM_001278512, intron 7 of 26)	CpG-8192	29084	NM_001278512	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	adaptor related protein complex 3 beta 2 subunit	protein-coding
4.81486-2	chr15	75494814	75495313	+	0	NA	intron (NM_015492, intron 1 of 2)	CpG	842	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
0.0833099-29	chr3	134593878	134594377	+	0	NA	intron (NM_004441, intron 1 of 15)	intron (NM_004441, intron 1 of 15)	80028	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
0.070049-43	chr3	51428321	51428820	+	0	NA	promoter-TSS (NM_013286)	promoter-TSS (NM_013286)	-129	NM_013286	29890	Hs.118738	NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|OTT3	RNA binding motif protein 15B	protein-coding
3.39135	chr6	7275865	7276364	+	0	NA	Intergenic	Intergenic	37433	NM_001292008	6745	Hs.114033	NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
4.98941-4	chr1	40378105	40378604	+	0	NA	Intergenic	SVA_D|Other|Other	-10667	NM_001033081	4610	Hs.437922	NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog	protein-coding
0.680339-36	chr4	169954786	169955285	+	0	NA	Intergenic	MER61C|LTR|ERV1	-23567	NM_032783	84869	Hs.659311	NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
1.75874-8	chr13	24463300	24463799	+	0	NA	promoter-TSS (NM_001135816)	promoter-TSS (NM_001135816)	38	NM_005932	4285	Hs.507498	NM_005932	ENSG00000027001	MIPEP	COXPD31|HMIP|MIP	mitochondrial intermediate peptidase	protein-coding
0.0921731-6	chr1	6662456	6662955	+	0	NA	exon (NM_001324309, exon 1 of 4)	exon (NM_001324309, exon 1 of 4)	253	NM_014851	9903	Hs.7764	NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
7.35182-4	chr12	42654249	42654748	+	0	NA	Intergenic	Intergenic	-22328	NM_005748	10138	Hs.649195	NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
15.6543-4	chr18	77550116	77550615	+	0	NA	Intergenic	Intergenic	-73303	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
6.55608-18	chr1	43123498	43123997	+	0	NA	promoter-TSS (NM_006347)	promoter-TSS (NM_006347)	-301	NM_001330510	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H	protein-coding
1.49354-11	chr1	169452758	169453257	+	0	NA	intron (NM_006996, intron 1 of 5)	intron (NM_006996, intron 1 of 5)	2201	NM_006996	10560	Hs.30246	NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
4.58421-15	chr1	156298194	156298693	+	0	NA	intron (NM_001008800, intron 3 of 11)	SVA_D|Other|Other	-8662	NM_144627	128229	Hs.534539	NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
2.57275-5	chr15	41249834	41250691	+	0	NA	Intergenic	L2b|LINE|L2	4915	NM_001142776	79094	Hs.155569	NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
5.60667-10	chrUn_gl000216	143440	143939	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
0.47692-14	chr3	27410698	27411197	+	0	NA	promoter-TSS (NM_199347)	promoter-TSS (NM_199347)	4	NM_199347	152110	Hs.506115	NM_152534	ENSG00000163491	NEK10	-	NIMA related kinase 10	protein-coding
0.0174066-19	chr6	151773086	151773585	+	0	NA	promoter-TSS (NM_001271937)	promoter-TSS (NM_001271937)	-19	NM_017909	55005	Hs.486835	NM_017909	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog	protein-coding
7.23538-10	chr3	123329131	123329630	+	0	NA	intron (NR_121654, intron 2 of 3)	MLT1I|LTR|ERVL-MaLR	10074	NM_053032	4638	Hs.477375	NM_005965	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
2.0621-5	chr16	11808344	11808843	+	0	NA	intron (NM_001303447, intron 5 of 12)	intron (NM_001303447, intron 5 of 12)	28141	NR_136673	51061	Hs.313847	NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
5.45155-2	chr18	46974114	46974613	+	0	NA	intron (NM_017653, intron 1 of 16)	HUERS-P3b-int|LTR|ERV1	12716	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
0.0305075	chr18	11747764	11748263	+	0	NA	intron (NM_182978, intron 1 of 11)	intron (NM_182978, intron 1 of 11)	-3458	NM_001261443	2774	Hs.136295	NM_002071	ENSG00000141404	GNAL	DYT25	G protein subunit alpha L	protein-coding
3.53596-12	chr7	32982470	32982969	+	0	NA	promoter-TSS (NR_003500)	promoter-TSS (NR_003500)	63	NR_003500	441212	Hs.648086	NM_001039754	ENSG00000205763	RP9P	-	retinitis pigmentosa 9 pseudogene	pseudo
6.9897-5	chr20	5682934	5683433	+	0	NA	Intergenic	SVA_D|Other|Other	-47850	NM_001303478	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
5.10042-4	chr1	157123957	157124456	+	0	NA	Intergenic	Intergenic	-15823	NM_001145312	2117	Hs.105636	NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1|bA110J1.4	ETS variant 3	protein-coding
2.11832-18	chr11	20865982	20866481	+	0	NA	intron (NM_001288714, intron 3 of 18)	intron (NM_001288714, intron 3 of 18)	175134	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
0.301184-15	chr3	97690482	97690981	+	0	NA	intron (NM_001261829, intron 1 of 9)	intron (NM_001261829, intron 1 of 9)	564	NM_001042533	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
3.41035-7	chr1	179162805	179163304	+	0	NA	intron (NM_007314, intron 1 of 11)	AluY|SINE|Alu	35765	NM_007314	27	Hs.159472	NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
4.27128-11	chr6	159234987	159235486	+	0	NA	intron (NM_001111077, intron 2 of 13)	intron (NM_001111077, intron 2 of 13)	-3775	NR_102425	101409257	Hs.571207	NR_102425		EZR-AS1	-	EZR antisense RNA 1	ncRNA
0.990869-12	chr14	67958809	67959308	+	0	NA	intron (NM_182526, intron 1 of 2)	intron (NM_182526, intron 1 of 2)	22963	NM_182526	161145	Hs.509707	NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
4.30626-5	chr10	35931003	35931502	+	0	NA	promoter-TSS (NM_031866)	promoter-TSS (NM_031866)	-890	NM_031866	8325	Hs.302634	NM_031866	ENSG00000177283	FZD8	FZ-8|hFZ8	frizzled class receptor 8	protein-coding
7.93174-12	chr1	72349254	72349753	+	0	NA	intron (NM_173808, intron 2 of 6)	L1PA5|LINE|L1	-46808	NR_046218	100852409	Hs.681780	NR_046218	ENSG00000228853	NEGR1-IT1	-	NEGR1 intronic transcript 1	ncRNA
3.24222-12	chr1	169071752	169072251	+	0	NA	Intergenic	Intergenic	-1361	NR_135799	101928596	Hs.308463	NR_135799	ENSG00000237707	LOC101928596	-	uncharacterized LOC101928596	ncRNA
0.540393-7	chr9	115774216	115774715	+	0	NA	promoter-TSS (NM_001101338)	promoter-TSS (NM_001101338)	7	NM_001101338	169834	Hs.192877	NM_001101338	ENSG00000228623	ZNF883	-	zinc finger protein 883	protein-coding
1.97911-10	chr2	206612548	206613047	+	0	NA	intron (NM_018534, intron 10 of 15)	intron (NM_018534, intron 10 of 15)	65573	NM_018534	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
0.0966115-14	chr13	102166926	102167425	+	0	NA	intron (NM_001271756, intron 1 of 9)	intron (NM_001271756, intron 1 of 9)	24872	NM_001271756	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
11.7522-3	chr13	31327053	31327552	+	0	NA	intron (NM_001204406, intron 4 of 5)	intron (NM_001204406, intron 4 of 5)	17657	NM_001629	241	Hs.507658	NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
0.172766-31	chr16	58497379	58497878	+	0	NA	promoter-TSS (NM_020465)	promoter-TSS (NM_020465)	79	NM_020465	65009	Hs.322430	NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
1.85087-8	chr6	27742703	27743202	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	13429	NR_038929	100131289	Hs.200573	NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
25.8336	chr3	13577409	13577908	+	0	NA	Intergenic	Intergenic	-12967	NM_001998	2199	Hs.198862	NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
9.31814-4	chr9	134729640	134730139	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-114558	NM_001304275	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
0.90444-6	chr13	78493734	78494233	+	0	NA	promoter-TSS (NM_001201397)	promoter-TSS (NM_001201397)	-80	NM_001201397	1910	Hs.82002	NM_000115	ENSG00000136160	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
0.419142-14	chr1	184005814	184006313	+	0	NA	intron (NM_001303421, intron 1 of 11)	CpG	841	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
0.195421-16	chr17	30169397	30169896	+	0	NA	Intergenic	Intergenic	16447	NM_001330176	55352	Hs.462729	NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
15.157-3	chr10	3998101	3998600	+	0	NA	Intergenic	Intergenic	-35002	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
3.85103-34	chr4	89378053	89378552	+	0	NA	promoter-TSS (NM_016323)	promoter-TSS (NM_016323)	34	NM_016323	51191	Hs.26663	NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
2.02732-16	chr20	46837736	46838235	+	0	NA	Intergenic	Intergenic	-150669	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
10.1682	chr11	98282489	98282988	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-608968	NM_001243271	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
2.62807-4	chr7	149089	149588	+	0	NA	promoter-TSS (NR_108065)	promoter-TSS (NR_108065)	100	NR_134325	102723672	Hs.605204	NR_134325		LOC102723672	-	uncharacterized LOC102723672	ncRNA
1.11821-15	chr19	12551652	12552151	+	0	NA	promoter-TSS (NM_005815)	promoter-TSS (NM_005815)	25	NM_005815	10224	Hs.636894	NM_005815	ENSG00000180855	ZNF443	ZK1	zinc finger protein 443	protein-coding
0.357404-5	chr17	4463622	4464121	+	0	NA	promoter-TSS (NM_001122890)	promoter-TSS (NM_001122890)	20	NM_001122890	124975	Hs.130749	NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
2.07608-16	chr15	74907526	74908025	+	0	NA	5' UTR (NM_001130028, exon 1 of 13)	5' UTR (NM_001130028, exon 1 of 13)	440	NM_001130028	1198	Hs.511790	NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
0.0921731-32	chr3	108742488	108742987	+	0	NA	intron (NM_014429, intron 17 of 27)	intron (NM_014429, intron 17 of 27)	-70060	NM_005459	9626	Hs.233363	NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
0.741724-18	chr5	1204700	1205199	+	0	NA	intron (NM_001003841, intron 1 of 11)	intron (NM_001003841, intron 1 of 11)	3239	NM_001003841	340024	Hs.481478	NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	solute carrier family 6 member 19	protein-coding
18.7615-6	chr18	29737916	29738415	+	0	NA	Intergenic	Intergenic	-31822	NM_001308171	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
3.34419-13	chr7	130276751	130277250	+	0	NA	intron (NM_012133, intron 9 of 12)	SVA_D|Other|Other	76598	NM_012133	26958	Hs.6421	NM_012133	ENSG00000158623	COPG2	2-COP|gamma-2-COP	coatomer protein complex subunit gamma 2	protein-coding
17.0774-2	chr18	3667171	3667670	+	0	NA	intron (NM_001308390, intron 4 of 10)	MIR|SINE|MIR	63685	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
3.95774-3	chr14	63633047	63633546	+	0	NA	Intergenic	SVA_D|Other|Other	-37806	NM_020663	57381	Hs.656339	NM_020663	ENSG00000126785	RHOJ	ARHJ|RASL7B|TC10B|TCL	ras homolog family member J	protein-coding
0.329203-3	chr14	24802753	24803252	+	0	NA	intron (NM_001198568, intron 1 of 24)	CpG	1275	NM_001198592	196883	Hs.443428	NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
7.69551-12	chrUn_gl000224	16648	17147	+	0	NA	Intergenic	Intergenic	-85606	NR_135481	100505874	Hs.559790	NR_135481		LOC100505874	-	uncharacterized LOC100505874	ncRNA
0.0436481-6	chr4	127965255	127965754	+	0	NA	Intergenic	Intergenic	-588583	NM_015693	27152	Hs.391481	NM_015693	ENSG00000164066	INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
0.555173-32	chr4	173995579	173996078	+	0	NA	Intergenic	Intergenic	-94076	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
1.17475-33	chr3	2140935	2141434	+	0	NA	intron (NM_175607, intron 1 of 24)	CpG	634	NM_175607	152330	Hs.298705	NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
0.491485-11	chr20	4741247	4741746	+	0	NA	Intergenic	CpG	-20182	NR_024267	149830	Hs.126516	NM_177549	ENSG00000180259	PRNT	M8	prion protein (testis specific)	ncRNA
4.17937-5	chr6	79788215	79788714	+	0	NA	promoter-TSS (NM_017934)	promoter-TSS (NM_017934)	-449	NM_017934	55023	Hs.511817	NM_017934	ENSG00000146247	PHIP	BRWD2|DCAF14|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
1.75874-15	chr8	27467998	27468497	+	0	NA	promoter-TSS (NR_106902)	promoter-TSS (NR_106902)	21	NR_106902	102465508		NR_106902	ENSG00000120885	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
0.150229-6	chr22	39919394	39919893	+	0	NA	TTS (NM_001675)	TTS (NM_001675)	3074	NM_182810	468	Hs.496487	NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
24.4733-3	chr2	5499437	5499936	+	0	NA	Intergenic	Intergenic	331564	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
2.39578-3	chr11	777244	777743	+	0	NA	promoter-TSS (NM_001318824)	promoter-TSS (NM_001318824)	9	NR_134868	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
2.99296	chr14	35168955	35169454	+	0	NA	Intergenic	Intergenic	13819	NM_021914	1073	Hs.180141	NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
2.96709-20	chr17	74260892	74261391	+	0	NA	promoter-TSS (NM_182565)	promoter-TSS (NM_182565)	-145	NM_182565	283991	Hs.744981	NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
0.48177-19	chr15	66423425	66423924	+	0	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	91103	NR_036196	100422905		NR_036196	ENSG00000263512	MIR4311	-	microRNA 4311	ncRNA
0.32452-9	chr4	139935705	139936204	+	0	NA	promoter-TSS (NM_012118)	promoter-TSS (NM_012118)	-959	NM_012118	25819	Hs.639842	NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
18.0134	chr10	79092003	79092502	+	0	NA	intron (NM_001322838, intron 1 of 29)	intron (NM_001322838, intron 1 of 29)	18267	NM_001322838	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
0.639892-19	chr15	74531580	74532079	+	0	NA	intron (NM_025055, intron 1 of 18)	intron (NM_025055, intron 1 of 18)	3199	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
0.888424-41	chr1	41961189	41961688	+	0	NA	Intergenic	Intergenic	-11084	NM_001302269	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
4.36519-3	chr10	72217981	72218480	+	0	NA	Intergenic	CpG	-10526	NM_001329906	4838	Hs.370414	NM_018055	ENSG00000156574	NODAL	HTX5	nodal growth differentiation factor	protein-coding
2.62013-14	chr6	71744913	71745412	+	0	NA	Intergenic	L3|LINE|CR1	-78374	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
4.44906-2	chr1	165437817	165438316	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-23474	NM_001256570	6258	Hs.26550	NM_006917	ENSG00000143171	RXRG	NR2B3|RXRC	retinoid X receptor gamma	protein-coding
0.070049-27	chr9	73864519	73865018	+	0	NA	Intergenic	Intergenic	-128254	NM_001007471	80036	Hs.47288	NM_020952	ENSG00000083067	TRPM3	GON-2|LTRPC3|MLSN2	transient receptor potential cation channel subfamily M member 3	protein-coding
10.7469-7	chr2	182322619	182323118	+	0	NA	intron (NM_000885, intron 1 of 27)	CpG	1249	NM_001316312	3676	Hs.72981	NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
6.9897-14	chr18	77153165	77153664	+	0	NA	Intergenic	CpG	-2358	NM_001278669	4772	Hs.534074	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T-cells 1	protein-coding
0.979971-14	chr17	7738889	7739388	+	0	NA	Intergenic	CpG	-4097	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine demethylase 6B	protein-coding
0.315171-17	chr5	15523468	15523967	+	0	NA	intron (NM_001278317, intron 1 of 3)	intron (NM_001278317, intron 1 of 3)	22170	NM_001278317	23194	Hs.433057	NM_012304	ENSG00000183580	FBXL7	FBL6|FBL7	F-box and leucine rich repeat protein 7	protein-coding
1.75224-2	chr12	110705006	110705505	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	-13777	NM_170665	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
18.1531-7	chr17	79988673	79989172	+	0	NA	promoter-TSS (NM_001316307)	promoter-TSS (NM_001316307)	-610	NM_001316307	5881	Hs.45002	NM_005052	ENSG00000169750	RAC3	-	ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)	protein-coding
0.757207-10	chr20	44562235	44562734	+	0	NA	promoter-TSS (NM_022104)	promoter-TSS (NM_022104)	-833	NM_022104	63935	Hs.472856	NM_022104	ENSG00000100982	PCIF1	C20orf67|PPP1R121	PDX1 C-terminal inhibiting factor 1	protein-coding
3.20572-8	chr4	99917019	99917518	+	0	NA	intron (NM_015143, intron 1 of 10)	CpG	480	NM_015143	23173	Hs.480364	NM_015143	ENSG00000164024	METAP1	MAP1A|MetAP1A	methionyl aminopeptidase 1	protein-coding
6.61544-3	chr1	60280744	60281243	+	0	NA	intron (NM_015888, intron 1 of 21)	CpG	460	NM_015888	51361	Hs.378836	NM_015888	ENSG00000134709	HOOK1	HK1	hook microtubule tethering protein 1	protein-coding
0.245682-11	chr10	15210332	15210831	+	0	NA	exon (NM_004808, exon 1 of 12)	exon (NM_004808, exon 1 of 12)	114	NM_004808	9397	Hs.60339	NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
17.986-4	chr1	114759297	114759796	+	0	NA	Intergenic	Intergenic	-63074	NM_001270805	148281	Hs.370963	NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
15.0724	chr5	91443509	91444008	+	0	NA	Intergenic	Intergenic	-764568	NR_138072	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
0.9691-10	chr12	76479143	76479642	+	0	NA	promoter-TSS (NM_001307924)	promoter-TSS (NM_001307924)	-579	NM_004537	4673	Hs.524599	NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
1.81774-10	chr3	50553028	50553527	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-11602	NM_001291101	9254	Hs.476273	NM_006030	ENSG00000007402	CACNA2D2	CACNA2D	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
2.44125-8	chr8	143296823	143297322	+	0	NA	intron (NM_145003, intron 13 of 13)	intron (NM_145003, intron 13 of 13)	17355	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
0.491485-12	chr3	32509096	32509595	+	0	NA	Intergenic	CpG	35058	NM_017801	54918	Hs.380627	NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
8.53872-5	chr8	91817221	91817720	+	0	NA	intron (NM_022351, intron 2 of 12)	intron (NM_022351, intron 2 of 12)	13549	NM_022351	64168	Hs.719466	NM_022351	ENSG00000123119	NECAB1	EFCBP1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
26.6959	chr18	26676663	26677162	+	0	NA	Intergenic	Intergenic	-919502	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
81.463-2	chr7	135402339	135402838	+	0	NA	intron (NM_012450, intron 2 of 15)	MLT2B1|LTR|ERVL	10364	NM_001318192	26266	Hs.490241	NM_012450	ENSG00000164707	SLC13A4	NAS2|SUT-1|SUT1	solute carrier family 13 member 4	protein-coding
0.0788851-15	chr13	97960190	97960689	+	0	NA	intron (NM_001306070, intron 2 of 7)	intron (NM_001306070, intron 2 of 7)	85889	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
0.90444	chrX	54556127	54557093	+	0	NA	promoter-TSS (NM_001184819)	promoter-TSS (NM_001184819)	-34	NM_001184819	54552	Hs.654677	NM_019067	ENSG00000130119	GNL3L	GNL3B	G protein nucleolar 3 like	protein-coding
0.218195-9	chr13	103109610	103110109	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-55081	NM_001321945	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
20.1368	chr8	70509278	70509777	+	0	NA	intron (NR_132437, intron 1 of 16)	intron (NR_132437, intron 1 of 16)	4392	NR_132437	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding
1.41463-22	chr17	40688003	40688502	+	0	NA	5' UTR (NM_000263, exon 1 of 6)	5' UTR (NM_000263, exon 1 of 6)	301	NM_000263	4669	Hs.50727	NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
0.510982-7	chr4	174132933	174133432	+	0	NA	intron (NM_017423, intron 1 of 11)	intron (NM_017423, intron 1 of 11)	-42379	NR_134242	101930370	Hs.563191	NR_134241	ENSG00000245213	LOC101930370	-	uncharacterized LOC101930370	ncRNA
4.12289-6	chr1	23670733	23671232	+	0	NA	promoter-TSS (NM_001102397)	promoter-TSS (NM_001102397)	-125	NM_001297620	10236	Hs.373763	NM_005826	ENSG00000125944	HNRNPR	HNRPR|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
4.88117-5	chr10	102728878	102729377	+	0	NA	Intergenic	Intergenic	-3159	NM_001203244	57715	Hs.591923	NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
0.25028-3	chrX	128788192	128788691	+	0	NA	intron (NM_017413, intron 1 of 2)	CpG	492	NM_017413	8862	Hs.303084	NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
9.74694-2	chr5	9781533	9782032	+	0	NA	intron (NR_027112, intron 4 of 12)	L2a|LINE|L2	122154	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LINC02112	-	long intergenic non-protein coding RNA 2112	ncRNA
10.8513-2	chr2	217244902	217245401	+	0	NA	Intergenic	Intergenic	-8401	NM_020814	57574	Hs.170388	NM_020814	ENSG00000144583	MARCH4	MARCH-IV|RNF174	membrane associated ring-CH-type finger 4	protein-coding
13.1876-3	chr9	129774544	129775043	+	0	NA	intron (NM_001190728, intron 3 of 16)	intron (NM_001190728, intron 3 of 16)	50289	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
0.132283-24	chr1	212815223	212815722	+	0	NA	Intergenic	AluJb|SINE|Alu	17683	NM_153606	149647	Hs.129293	NM_153606	ENSG00000162771	FAM71A	GARI-L4	family with sequence similarity 71 member A	protein-coding
1.41463-7	chr1	166808375	166809336	+	0	NA	intron (NM_017542, intron 1 of 5)	CpG	214	NM_001314014	57645	Hs.432752	NM_017542	ENSG00000143157	POGK	BASS2|KRBOX2|LST003	pogo transposable element with KRAB domain	protein-coding
20.1011-2	chr12	93566912	93567411	+	0	NA	promoter-TSS (NR_120492)	promoter-TSS (NR_120492)	-981	NR_120492	102724933	Hs.663947	NR_120492	ENSG00000258171	LOC102724933	-	uncharacterized LOC102724933	ncRNA
36.5956	chr5	160827730	160828229	+	0	NA	intron (NM_021911, intron 6 of 10)	intron (NM_021911, intron 6 of 10)	147151	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding
1.67491-22	chr11	118763089	118763588	+	0	NA	promoter-TSS (NM_032966)	promoter-TSS (NM_032966)	-763	NM_032966	643	Hs.113916	NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
2.97569-11	chr12	7074148	7074647	+	0	NA	TTS (NR_135032)	TTS (NR_135032)	1137	NR_029682	406933		NR_029682	ENSG00000207708	MIR141	MIRN141|mir-141	microRNA 141	ncRNA
0.472076-4	chr2	187560139	187560638	+	0	NA	intron (NM_177454, intron 1 of 7)	intron (NM_177454, intron 1 of 7)	1599	NM_177454	165215	Hs.28872	NM_177454	ENSG00000144369	FAM171B	KIAA1946	family with sequence similarity 171 member B	protein-coding
6.65546-5	chr11	71478349	71478848	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-19959	NM_018172	55199	Hs.567527	NM_018172	ENSG00000158483	FAM86C1	FAM86C	family with sequence similarity 86 member C1	protein-coding
0.419142-51	chr16	8891098	8891821	+	0	NA	promoter-TSS (NM_015421)	promoter-TSS (NM_015421)	46	NM_015421	25880	Hs.513330	NM_015421	ENSG00000184857	TMEM186	C16orf51	transmembrane protein 186	protein-coding
19.8297-5	chr12	57583739	57584238	+	0	NA	intron (NM_002332, intron 42 of 88)	intron (NM_002332, intron 42 of 88)	-4299	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
0.736576-15	chr5	159797389	159797888	+	0	NA	promoter-TSS (NM_031908)	promoter-TSS (NM_031908)	10	NM_031908	114898	Hs.110062	NM_031908	ENSG00000145861	C1QTNF2	CTRP2|zacrp2	C1q and tumor necrosis factor related protein 2	protein-coding
0.390538-22	chr2	235304513	235305012	+	0	NA	Intergenic	Intergenic	100931	NM_005737	10123	Hs.111554	NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
2.84833	chr12	50616159	50616658	+	0	NA	promoter-TSS (NM_001113547)	promoter-TSS (NM_001113547)	80	NM_001113547	51474	Hs.525419	NM_016357	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
0.496351-16	chr7	30265306	30265805	+	0	NA	Intergenic	Intergenic	-58368	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
1.31356-9	chr8	92872429	92872928	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	157230	NM_175636	862	Hs.368431	NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 translocation partner 1	protein-coding
4.4855-3	chr7	8677595	8678094	+	0	NA	intron (NM_152745, intron 2 of 2)	intron (NM_152745, intron 2 of 2)	204259	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
1.74574-7	chr9	6549065	6549564	+	0	NA	intron (NM_000170, intron 21 of 24)	intron (NM_000170, intron 21 of 24)	96378	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine decarboxylase	protein-coding
0.428718-17	chr2	160761032	160761531	+	0	NA	promoter-TSS (NM_001198760)	promoter-TSS (NM_001198760)	-14	NM_001198759	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
0.990869-3	chr4	122821334	122821833	+	0	NA	intron (NM_003305, intron 8 of 10)	intron (NM_003305, intron 8 of 10)	-29931	NM_176824	55212	Hs.591694	NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
21.6115	chr16	77490832	77491331	+	0	NA	Intergenic	Intergenic	-22070	NM_199355	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding
0.5061-21	chr14	50802004	50802503	+	0	NA	intron (NM_004196, intron 6 of 8)	intron (NM_004196, intron 6 of 8)	23206	NR_033761	27109	Hs.438489	NM_015684	ENSG00000125375	ATP5S	ATPW|FB|HSU79253	ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B)	protein-coding
0.371573-18	chr8	92212123	92212622	+	0	NA	intron (NM_001129890, intron 6 of 7)	MER5A1|DNA|hAT-Charlie	-5341	NR_039805	100616245		NR_039805	ENSG00000266194	MIR4661	-	microRNA 4661	ncRNA
10.1909-3	chr14	57219121	57219620	+	0	NA	Intergenic	Intergenic	53011	NM_001270525	5015	Hs.288655	NM_021728	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding
1.39662-18	chr2	86264322	86264821	+	0	NA	intron (NM_015425, intron 27 of 33)	intron (NM_015425, intron 27 of 33)	-13580	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
7.44727-3	chr6	100116186	100116685	+	0	NA	Intergenic	Intergenic	61785	NM_021620	59336	Hs.287386	NM_021620	ENSG00000112238	PRDM13	MU-MB-20.220|PFM10	PR/SET domain 13	protein-coding
0.472076-19	chr2	8977464	8977963	+	0	NA	promoter-TSS (NM_020738)	promoter-TSS (NM_020738)	42	NM_020738	57498	Hs.9873	NM_020738	ENSG00000134313	KIDINS220	ARMS	kinase D interacting substrate 220	protein-coding
5.48214-5	chr1	43389758	43390257	+	0	NA	Intergenic	CpG	-34713	NR_033967	440584	Hs.260928	NR_033967	ENSG00000227533	SLC2A1-AS1	-	SLC2A1 antisense RNA 1	ncRNA
16.6959-5	chr14	32774024	32774523	+	0	NA	Intergenic	Intergenic	-24206	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
2.8735-11	chr6	91807536	91808035	+	0	NA	Intergenic	Intergenic	-423593	NR_039786	100616174		NR_039786	ENSG00000263734	MIR4643	-	microRNA 4643	ncRNA
2.38824-9	chr16	57511304	57511803	+	0	NA	intron (NM_001330556, intron 1 of 6)	intron (NM_001330556, intron 1 of 6)	2226	NM_001330556	55715	Hs.279832	NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
2.89883-18	chr1	229391829	229392328	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-14731	NM_001271998	5867	Hs.296169	NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
1.34304-2	chr10	50816071	50816570	+	0	NA	promoter-TSS (NM_020984)	promoter-TSS (NM_020984)	-821	NM_020984	1103	Hs.302002	NM_020549	ENSG00000070748	CHAT	CHOACTASE|CMS1A|CMS1A2|CMS6	choline O-acetyltransferase	protein-coding
3.40084-4	chr1	152025000	152025499	+	0	NA	Intergenic	Intergenic	-15738	NM_005620	6282	Hs.417004	NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
4.65974-9	chr4	79860626	79861125	+	0	NA	promoter-TSS (NM_001040202)	promoter-TSS (NM_001040202)	-293	NM_001040202	152559	Hs.657312	NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
2.13249-12	chr1	162359169	162359668	+	0	NA	Intergenic	Intergenic	7898	NM_001085375	400793	Hs.447011	NM_001085375	ENSG00000239887	C1orf226	-	chromosome 1 open reading frame 226	protein-coding
0.496351-37	chr9	100685311	100685810	+	0	NA	promoter-TSS (NM_016481)	promoter-TSS (NM_016481)	-708	NM_016481	51531	Hs.9196	NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
0.599818-12	chr4	190892455	190892954	+	0	NA	Intergenic	SVA_D|Other|Other	30730	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
0.385789-34	chr8	118773240	118773739	+	0	NA	Intergenic	Intergenic	240537	NM_080651	90390	Hs.492612	NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
0.329203-8	chr2	7197952	7198451	+	0	NA	Intergenic	Intergenic	19810	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
5.98599-12	chr11	125757405	125757904	+	0	NA	5' UTR (NM_001134793, exon 1 of 3)	5' UTR (NM_001134793, exon 1 of 3)	699	NM_001134793	219844	Hs.98133	NM_145014	ENSG00000198331	HYLS1	HLS	HYLS1, centriolar and ciliogenesis associated	protein-coding
0.851282-6	chr13	31735985	31736484	+	0	NA	promoter-TSS (NM_001286503)	promoter-TSS (NM_001286503)	-76	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
7.47147-13	chr14	90422352	90422851	+	0	NA	5' UTR (NM_001330205, exon 1 of 15)	5' UTR (NM_001330205, exon 1 of 15)	288	NM_001330205	55775	Hs.209945	NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
4.52225-9	chr10	79789088	79789587	+	0	NA	promoter-TSS (NM_007055)	promoter-TSS (NM_007055)	-39	NM_007055	11128	Hs.436896	NM_007055	ENSG00000148606	POLR3A	ADDH|HLD7|RPC1|RPC155|hRPC155	RNA polymerase III subunit A	protein-coding
0.070049-60	chr20	49923248	49923747	+	0	NA	Intergenic	Intergenic	146017	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
13.3819	chr4_gl000193_random	85718	86674	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	2179	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
3.48722-3	chr8	98656106	98656605	+	0	NA	promoter-TSS (NM_178812)	promoter-TSS (NM_178812)	-52	NM_178812	92140	Hs.377155	NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
1.00727-5	chr5	154317147	154317646	+	0	NA	intron (NM_001252156, intron 1 of 27)	MIR3|SINE|MIR	380	NM_015465	25929	Hs.483921	NM_015465	ENSG00000082516	GEMIN5	GEMIN-5	gem nuclear organelle associated protein 5	protein-coding
0.296531-60	chr9	100616162	100616661	+	0	NA	exon (NM_004473, exon 1 of 1)	exon (NM_004473, exon 1 of 1)	874	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
2.66803	chr17	6347285	6347784	+	0	NA	promoter-TSS (NM_001195228)	promoter-TSS (NM_001195228)	-201	NM_019013	54478	Hs.592116	NM_019013	ENSG00000129195	FAM64A	CATS|RCS1	family with sequence similarity 64 member A	protein-coding
0.231917-4	chr16	28222256	28222755	+	0	NA	intron (NM_001270940, intron 1 of 24)	intron (NM_001270940, intron 1 of 24)	734	NM_001270940	23214	Hs.460468	NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
1.54902-11	chr9	112027280	112027779	+	0	NA	intron (NM_018424, intron 4 of 15)	intron (NM_018424, intron 4 of 15)	55715	NM_019114	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
1.22053-32	chr13	91412584	91413083	+	0	NA	Intergenic	Intergenic	166018	NR_027039	144776	Hs.434120	NR_027039	ENSG00000231674	LINC00410	-	long intergenic non-protein coding RNA 410	ncRNA
0.145735-24	chr6	143123180	143123679	+	0	NA	intron (NM_006734, intron 2 of 9)	MLT1J2|LTR|ERVL-MaLR	142909	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
11.5552	chr11	99254317	99254816	+	0	NA	intron (NM_014361, intron 2 of 24)	intron (NM_014361, intron 2 of 24)	-172310	NM_175566	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
2.09715-4	chr15	52971319	52971818	+	0	NA	promoter-TSS (NM_019600)	promoter-TSS (NM_019600)	-737	NM_019600	56204	Hs.152385	NM_019600	ENSG00000047346	FAM214A	KIAA1370	family with sequence similarity 214 member A	protein-coding
0.0392635-33	chr7	148637667	148638518	+	0	NA	Intergenic	CpG	-46527	NR_130107	102723099	Hs.621982	NR_130107	ENSG00000281189	GHET1	lncRNA-GHET1	gastric carcinoma proliferation enhancing transcript 1	ncRNA
20.4964	chr6	42738709	42739208	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-12276	NR_134654	401261	Hs.656652	NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
1.72631-20	chr3	158519552	158520051	+	0	NA	promoter-TSS (NM_001167903)	promoter-TSS (NM_001167903)	86	NM_001289407	64747	Hs.58663	NM_022736	ENSG00000118855	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
13.1605	chr3	194115880	194116379	+	0	NA	3' UTR (NM_004488, exon 2 of 2)	3' UTR (NM_004488, exon 2 of 2)	3866	NM_004488	2814	Hs.73734	NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
13.6251	chr8	40229380	40229879	+	0	NA	Intergenic	Intergenic	218642	NM_020130	56892	Hs.591849	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
0.0921731-14	chr11	33398177	33398676	+	0	NA	Intergenic	CpG	118549	NM_001278162	10114	Hs.201918	NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
10.8145-3	chr5	55670774	55671273	+	0	NA	Intergenic	Intergenic	106573	NR_104664	102467147	Hs.650177	NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
4.9485-6	chr15	75493878	75494716	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	76	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
2.03426-5	chr8	93478851	93479350	+	0	NA	Intergenic	Intergenic	188622	NR_125827	102724710	Hs.125714	NR_125827	ENSG00000253634	LOC102724710	-	uncharacterized LOC102724710	ncRNA
4.11168-5	chr5	21044195	21044694	+	0	NA	Intergenic	LTR1|LTR|ERV1	-415145	NR_027026	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo
0.296531-73	chr3	126606930	126607429	+	0	NA	intron (NM_001320610, intron 5 of 7)	MLT1J|LTR|ERVL-MaLR	-100258	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
3.40084-21	chr4	7208813	7209312	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	14688	NM_020777	57537	Hs.479099	NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
0.385789-44	chr7	36123963	36124462	+	0	NA	Intergenic	Intergenic	-10708	NR_108089	101928618	Hs.561704	NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
0.0217692-14	chr8	145748419	145748918	+	0	NA	exon (NM_001024678, exon 5 of 5)	exon (NM_001024678, exon 5 of 5)	3748	NM_001024678	441381	Hs.740859	NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
3.41035-10	chr9	133381227	133381726	+	0	NA	Intergenic	SVA_D|Other|Other	61382	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
1.12946-24	chr1	113497965	113499169	+	0	NA	promoter-TSS (NR_103743)	promoter-TSS (NR_103743)	118	NM_001166496	6566	Hs.75231	NM_003051	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1|MCT1D	solute carrier family 16 member 1	protein-coding
2.13249-6	chr3	159095670	159096169	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	95484	NR_037483	100500803		NR_037483	ENSG00000263634	MIR3919	-	microRNA 3919	ncRNA
0.0392635-42	chr8	7468558	7469057	+	0	NA	Intergenic	CpG	-36887	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
0.105502-2	chr3	140824583	140825082	+	0	NA	intron (NM_080862, intron 2 of 2)	intron (NM_080862, intron 2 of 2)	54588	NM_080862	92369	Hs.655112	NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
0.227338-19	chrX	84499714	84500213	+	0	NA	intron (NM_001330574, intron 1 of 10)	intron (NM_001330574, intron 1 of 10)	966	NM_001330574	7552	Hs.326801	NM_021998	ENSG00000147180	ZNF711	CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1	zinc finger protein 711	protein-coding
1.89767-4	chr4	74316416	74316915	+	0	NA	intron (NM_001134, intron 11 of 14)	intron (NM_001134, intron 11 of 14)	14729	NM_001134	174	Hs.518808	NM_001134	ENSG00000081051	AFP	AFPD|FETA|HPAFP	alpha fetoprotein	protein-coding
0.565055-2	chr20	44519650	44520149	+	0	NA	promoter-TSS (NM_080749)	promoter-TSS (NM_080749)	27	NM_001278535	140825	Hs.517094	NM_080749	ENSG00000124257	NEURL2	C20orf163|OZZ|OZZ-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding
0.0877392-21	chr20	35203755	35204254	+	0	NA	intron (NM_001199515, intron 1 of 2)	intron (NM_001199515, intron 1 of 2)	1047	NM_001199515	60436	Hs.632264	NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
9.62574-10	chr19	21905004	21905503	+	0	NA	Intergenic	SVA_E|Other|Other	-28294	NR_024523	641367	Hs.680128	NR_024523	ENSG00000269845	LOC641367	-	cyclin Y like 1 pseudogene	pseudo
0.195421-5	chr14	31889532	31890031	+	0	NA	promoter-TSS (NR_110045)	promoter-TSS (NR_110045)	7	NM_015473	25938	Hs.744979	NM_015473	ENSG00000129493	HEATR5A	C14orf125	HEAT repeat containing 5A	protein-coding
0.721166-10	chr22	29279221	29279720	+	0	NA	promoter-TSS (NM_001206998)	promoter-TSS (NM_001206998)	-285	NM_001206998	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
0.510982-25	chr12	113684760	113685259	+	0	NA	intron (NM_001301214, intron 1 of 26)	intron (NM_001301214, intron 1 of 26)	2943	NM_001301214	53373	Hs.524763	NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
8.79426-5	chr5	35249376	35249875	+	0	NA	Intergenic	Intergenic	-18934	NM_000949	5618	Hs.368587	NM_000949	ENSG00000113494	PRLR	HPRL|MFAB|hPRLrI	prolactin receptor	protein-coding
1.22629-30	chr22	31364891	31365390	+	0	NA	promoter-TSS (NM_001303256)	promoter-TSS (NM_001303256)	-57	NR_110492	55000	Hs.554829	NR_002323		TUG1	LINC00080|NCRNA00080|TI-227H	taurine up-regulated 1 (non-protein coding)	ncRNA
0.877779-19	chr2	196521487	196521986	+	0	NA	promoter-TSS (NM_020342)	promoter-TSS (NM_020342)	-116	NM_020342	57181	Hs.650158	NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2	solute carrier family 39 member 10	protein-coding
14.9894	chr13	22553551	22554050	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-101501	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
5.25784-13	chr2	9224103	9224602	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-80473	NR_135602	129642	Hs.467634	NM_138799	ENSG00000143797	MBOAT2	LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2	membrane bound O-acyltransferase domain containing 2	protein-coding
0.540393-2	chr7	105289091	105289590	+	0	NA	intron (NM_020725, intron 4 of 11)	intron (NM_020725, intron 4 of 11)	30269	NM_138495	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
7.98603	chr8	136676979	136677478	+	0	NA	Intergenic	Intergenic	207520	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
0.296531-131	chr9_gl000199_random	152699	153198	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2.79014-4	chr7	71615233	71615732	+	0	NA	intron (NM_001017440, intron 2 of 5)	L2a|LINE|L2	186726	NM_001017440	83698	Hs.592750	NM_031468	ENSG00000183166	CALN1	CABP8	calneuron 1	protein-coding
1.67491-20	chr2	47214114	47214613	+	0	NA	intron (NM_020458, intron 5 of 19)	intron (NM_020458, intron 5 of 19)	-45369	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
0.584886-9	chr19	13260944	13261443	+	0	NA	promoter-TSS (NM_001271611)	promoter-TSS (NM_001271611)	-5	NM_001271611	8677	Hs.43812	NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
0.00869459-12	chr3	6811441	6811940	+	0	NA	intron (NR_110125, intron 2 of 3)	L1PA3|LINE|L1	35446	NR_110125	101927347	Hs.333345	NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
1.75874-2	chr10	73091370	73091869	+	0	NA	intron (NR_033414, intron 2 of 3)	MER5A|DNA|hAT-Charlie	12609	NR_033414	55315	Hs.438419	NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
0.496351-44	chr17	58678107	58678606	+	0	NA	intron (NM_003620, intron 1 of 5)	intron (NM_003620, intron 1 of 5)	812	NM_003620	8493	Hs.286073	NM_003620	ENSG00000170836	PPM1D	PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent 1D	protein-coding
0.347983-11	chr11	62078506	62079005	+	0	NA	Intergenic	Intergenic	-12219	NM_206998	404552	Hs.473247	NM_206998	ENSG00000197745	SCGB1D4	IIS	secretoglobin family 1D member 4	protein-coding
1.37869-21	chr3	160587580	160588079	+	0	NA	promoter-TSS (NR_134243)	promoter-TSS (NR_134243)	-557	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
10.2045-4	chr18	72516603	72517102	+	0	NA	TTS (NM_001146190)	TTS (NM_001146190)	173933	NM_017757	55628	Hs.536490	NM_017757	ENSG00000215421	ZNF407	-	zinc finger protein 407	protein-coding
1.92465	chr15	77835789	77836288	+	0	NA	Intergenic	MIR3|SINE|MIR	18101	NR_135692	101929457	Hs.637111	NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
3.65523-11	chr12	57824640	57825139	+	0	NA	promoter-TSS (NM_014925)	promoter-TSS (NM_014925)	-101	NM_014925	22864	Hs.443673	NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
15.6225-3	chr4	159931664	159932163	+	0	NA	intron (NM_152543, intron 1 of 4)	L3|LINE|CR1	24420	NM_152543	152940	Hs.415576	NM_152543	ENSG00000164123	C4orf45	-	chromosome 4 open reading frame 45	protein-coding
2.0204-18	chr4	140476326	140476825	+	0	NA	intron (NR_131339, intron 1 of 3)	CpG	1348	NM_001306200	80854	Hs.480792	NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing lysine methyltransferase 7	protein-coding
0.11441-17	chr7	76639411	76639910	+	0	NA	intron (NR_023383, intron 6 of 10)	intron (NR_023383, intron 6 of 10)	-29137	NR_028058	100132832	Hs.292996	NM_001129851		PMS2P9	PMS2L17|PMS2LP1|PMSR5	PMS1 homolog 2, mismatch repair system component pseudogene 9	pseudo
0.540393-48	chr15	32949603	32950102	+	0	NA	intron (NM_001144757, intron 2 of 5)	intron (NM_001144757, intron 2 of 5)	15414	NR_135505	105370757	Hs.738329	NR_135505	ENSG00000241818	LOC105370757	-	uncharacterized LOC105370757	ncRNA
1.45694-15	chr10	60026978	60027477	+	0	NA	exon (NM_152230, exon 1 of 6)	exon (NM_152230, exon 1 of 6)	467	NM_152230	253430	Hs.30280	NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
6.38272-6	chr4_gl000193_random	81528	82027	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	6598	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
0.579919-9	chr3	183543468	183543967	+	0	NA	promoter-TSS (NM_024871)	promoter-TSS (NM_024871)	-324	NM_024871	79929	Hs.478465	NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
16.1798-3	chr1	202933980	202934479	+	0	NA	intron (NM_016243, intron 5 of 8)	intron (NM_016243, intron 5 of 8)	2175	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
1.11821-14	chr5	176831214	176831713	+	0	NA	intron (NM_000505, intron 8 of 13)	CpG-21467	-3826	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
14.908-2	chrX	10039722	10040221	+	0	NA	intron (NM_015691, intron 3 of 22)	MIRb|SINE|MIR	56176	NM_015691	55841	Hs.527524	NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
2.18963-29	chr7	36168609	36169108	+	0	NA	Intergenic	Intergenic	-23978	NM_030636	80820	Hs.487994	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
9.66576-2	chr2	101744890	101745389	+	0	NA	intron (NR_138475, intron 1 of 18)	L1MB3|LINE|L1	22770	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding
0.447935-10	chr2	97561336	97561835	+	0	NA	promoter-TSS (NM_001172667)	promoter-TSS (NM_001172667)	-686	NM_001172667	51252	Hs.107922	NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
6.55608-10	chr2	160142965	160143464	+	0	NA	promoter-TSS (NM_001307994)	promoter-TSS (NM_001307994)	96	NM_001330278	151525	Hs.20848	NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
1.67491-16	chr1	159750351	159750850	+	0	NA	promoter-TSS (NM_001319658)	promoter-TSS (NM_001319658)	-136	NM_017823	54935	Hs.425801	NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding
9.20819-7	chr16	75300678	75301177	+	0	NA	promoter-TSS (NM_001170716)	promoter-TSS (NM_001170716)	-220	NM_001170716	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
4.1005-8	chr4	120988008	120988507	+	0	NA	promoter-TSS (NM_002358)	promoter-TSS (NM_002358)	-244	NM_002358	4085	Hs.591697	NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	MAD2 mitotic arrest deficient-like 1 (yeast)	protein-coding
20.1547	chr1	241610458	241610957	+	0	NA	Intergenic	Intergenic	72378	NM_000143	2271	Hs.592490	NM_000143	ENSG00000091483	FH	FMRD|HLRCC|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
3.10691-8	chr3	127682829	127683328	+	0	NA	intron (NM_207335, intron 4 of 4)	intron (NM_207335, intron 4 of 4)	41176	NM_207335	166348	Hs.132087	NM_207335	ENSG00000187715	KBTBD12	KLHDC6	kelch repeat and BTB domain containing 12	protein-coding
10.4001	chrX	151938480	151938979	+	0	NA	promoter-TSS (NM_005362)	promoter-TSS (NM_005362)	-489	NM_005362	4102	Hs.417816	NM_005362	ENSG00000221867	MAGEA3	CT1.3|HIP8|HYPD|MAGE3|MAGEA6	MAGE family member A3	protein-coding
0.76238-3	chr10	104163479	104163978	+	0	NA	non-coding (NR_073110, exon 7 of 8)	non-coding (NR_073110, exon 7 of 8)	5313	NR_073110	5662	Hs.154658	NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
1.83096	chr2	170590753	170591252	+	0	NA	intron (NM_144711, intron 1 of 3)	intron (NM_144711, intron 1 of 3)	646	NM_144711	151230	Hs.655150	NM_144711	ENSG00000213160	KLHL23	DITHP	kelch like family member 23	protein-coding
17.4473-3	chr20	61282493	61282992	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	8945	NM_016354	28231	Hs.235782	NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
0.501223-6	chr6	160393681	160394180	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	3799	NM_000876	3482	Hs.487062	NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
18.5387	chr5	143578609	143579108	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	28421	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
23.1785	chr8	73646904	73647403	+	0	NA	intron (NR_110656, intron 1 of 2)	intron (NR_110656, intron 1 of 2)	2873	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
1.85087-14	chr2	203239936	203240435	+	0	NA	promoter-TSS (NM_001204)	promoter-TSS (NM_001204)	-865	NM_001204	659	Hs.471119	NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
1.22053-18	chr20	10490772	10491271	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	75070	NM_001009608	128710	Hs.668782	NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
3.31614-14	chr10	105210959	105211458	+	0	NA	intron (NM_015916, intron 1 of 3)	intron (NM_015916, intron 1 of 3)	954	NM_015916	51063	Hs.241545	NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator 2	protein-coding
3.7059	chr15	39747709	39748208	+	0	NA	Intergenic	Intergenic	-125322	NM_003246	7057	Hs.164226	NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
0.777937-10	chr17	73030355	73031295	+	0	NA	intron (NR_110835, intron 2 of 7)	CpG	2163	NR_110835	23510	Hs.514468	NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
3.49692-11	chr18	21463335	21463834	+	0	NA	intron (NM_001127717, intron 40 of 73)	intron (NM_001127717, intron 40 of 73)	10600	NM_001127718	3909	Hs.436367	NM_000227	ENSG00000053747	LAMA3	BM600|E170|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
5.37602-12	chr18	43268844	43269343	+	0	NA	Intergenic	Intergenic	-34995	NM_001308278	6563	Hs.101307	NM_015865	ENSG00000141469	SLC14A1	HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
13.8616	chr3	169531448	169531947	+	0	NA	Intergenic	LTR1|LTR|ERV1	-1123	NM_001172780	151827	Hs.591289	NM_153353	ENSG00000171757	LRRC34	-	leucine rich repeat containing 34	protein-coding
3.24222-10	chr1	3712848	3713347	+	0	NA	promoter-TSS (NM_020710)	promoter-TSS (NM_020710)	-29	NM_020710	57470	Hs.268488	NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
0.141246-33	chr22	44753883	44754382	+	0	NA	Intergenic	Intergenic	-45401	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
1.53663-26	chr22	45837006	45837505	+	0	NA	Intergenic	Intergenic	27683	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
2.99296-3	chr11	69532852	69533351	+	0	NA	Intergenic	Intergenic	-13995	NM_005117	9965	Hs.249200	NM_005117	ENSG00000162344	FGF19	-	fibroblast growth factor 19	protein-coding
32.3508-3	chr13	52403652	52404151	+	0	NA	intron (NR_027047, intron 2 of 4)	intron (NR_027047, intron 2 of 4)	15385	NR_027048	283521	Hs.649896	NM_178515	ENSG00000281106	LINC00282	NCRNA00282	long intergenic non-protein coding RNA 282	ncRNA
0.423927-13	chr6	14542985	14543484	+	0	NA	Intergenic	Intergenic	-257549	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
0.0656377-11	chr18	77684648	77685556	+	0	NA	intron (NM_001146345, intron 3 of 4)	intron (NM_001146345, intron 3 of 4)	26551	NM_001146343	80148	Hs.288284	NM_025078	ENSG00000122490	PQLC1	-	PQ loop repeat containing 1	protein-coding
15.4061-3	chr2	211022734	211023233	+	0	NA	intron (NM_152519, intron 1 of 14)	MLT1F2|LTR|ERVL-MaLR	13111	NM_152519	151050	Hs.282260	NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
5.0724-11	chr1	63787873	63788806	+	0	NA	promoter-TSS (NR_121634)	promoter-TSS (NR_121634)	-210	NR_121634	100996301		NR_121634	ENSG00000230798	FOXD3-AS1	pasFOXD3	FOXD3 antisense RNA 1 (head to head)	ncRNA
1.4752-2	chr18	47606646	47607145	+	0	NA	intron (NM_001080467, intron 1 of 39)	intron (NM_001080467, intron 1 of 39)	46038	NR_036204	100422865		NR_036204	ENSG00000283343	MIR4320	-	microRNA 4320	ncRNA
0.163737-5	chr1	170388509	170389008	+	0	NA	Intergenic	SVA_D|Other|Other	-112505	NR_027397	92344	Hs.183702	NM_152281	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	golgin, RAB6 interacting	protein-coding
39.5468	chr20	13895912	13896411	+	0	NA	intron (NR_073206, intron 4 of 20)	intron (NR_073206, intron 4 of 20)	75104	NM_001271539	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	SEL1L2 ERAD E3 ligase adaptor subunit	protein-coding
19.8716-6	chr12	103941387	103941886	+	0	NA	promoter-TSS (NR_110103)	promoter-TSS (NR_110103)	64	NR_110103	101929084	Hs.440981	NR_110103	ENSG00000257762	LOC101929084	-	uncharacterized LOC101929084	ncRNA
2.64401-4	chr11	82718808	82719307	+	0	NA	intron (NM_001286060, intron 1 of 4)	intron (NM_001286060, intron 1 of 4)	26554	NM_001286059	27314	Hs.40758	NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
1.07349-20	chr4	8190407	8190906	+	0	NA	Intergenic	Intergenic	-10315	NM_018986	54436	Hs.479116	NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
4.30626-8	chr17	18528824	18529323	+	0	NA	promoter-TSS (NR_036647)	promoter-TSS (NR_036647)	-143	NR_036647	284047	Hs.448012	NR_036647	ENSG00000154874	CCDC144B	-	coiled-coil domain containing 144B (pseudogene)	pseudo
1.49967-13	chr1	246655801	246656300	+	0	NA	intron (NM_001167740, intron 1 of 11)	intron (NM_001167740, intron 1 of 11)	14594	NM_001167740	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
0.296531-6	chr15	75851594	75852093	+	0	NA	intron (NM_002833, intron 1 of 12)	SVA_C|Other|Other	19789	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding
1.64309-11	chr14	20552710	20553209	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	24755	NM_001004717	122742	Hs.553574	NM_001004717	ENSG00000176246	OR4L1	OR14-28|OR4L2P	olfactory receptor family 4 subfamily L member 1	protein-coding
0.0392635-25	chr6	125283988	125284487	+	0	NA	promoter-TSS (NR_026876)	promoter-TSS (NR_026876)	-64	NR_026876	7955	Hs.544438	NR_026876	ENSG00000236548	RNF217-AS1	STL	RNF217 antisense RNA 1 (head to head)	ncRNA
0.0921731-29	chr19	55768695	55769194	+	0	NA	intron (NM_014931, intron 1 of 23)	L2c|LINE|L2	1094	NM_014931	22870	Hs.515610	NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
0.357404-14	chr11	15707262	15707761	+	0	NA	intron (NM_001293172, intron 1 of 2)	SVA_B|Other|Other	42080	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
8.72895-10	chrX	138926288	138926787	+	0	NA	Intergenic	Intergenic	-12090	NM_173694	286410	Hs.88252	NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ	ATPase phospholipid transporting 11C	protein-coding
4.47332	chr4	113435836	113436335	+	0	NA	exon (NM_024019, exon 2 of 2)	exon (NM_024019, exon 2 of 2)	1243	NM_024019	63973	Hs.744415	NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
0.920515-2	chr5	77943787	77944466	+	0	NA	intron (NM_005779, intron 1 of 4)	CpG	522	NM_005779	10184	Hs.79299	NM_005779	ENSG00000145685	LHFPL2	-	lipoma HMGIC fusion partner-like 2	protein-coding
4.00117-8	chr20	25130601	25131100	+	0	NA	Intergenic	Intergenic	-1424	NR_027091	284798	Hs.334934	NR_027091	ENSG00000230725	LOC284798	-	uncharacterized LOC284798	ncRNA
5.10042-7	chr11	72504589	72505296	+	0	NA	promoter-TSS (NM_006645)	promoter-TSS (NM_006645)	-192	NM_006645	10809	Hs.188606	NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
0.254883-27	chr6	26215690	26216189	+	0	NA	TTS (NM_003518)	TTS (NM_003518)	933	NM_003518	8339	Hs.591809	NM_003518	ENSG00000273802	HIST1H2BG	H2B.1A|H2B/a|H2BFA|dJ221C16.8	histone cluster 1 H2B family member g	protein-coding
1.71985-11	chr15	65281582	65282482	+	0	NA	promoter-TSS (NM_001127889)	promoter-TSS (NM_001127889)	-188	NM_001127889	51324	Hs.242458	NM_016630	ENSG00000090487	SPG21	ACP33|BM-019|GL010|MAST	spastic paraplegia 21 (autosomal recessive, Mast syndrome)	protein-coding
10.2045-3	chr8	112051098	112051597	+	0	NA	Intergenic	MamRep137|DNA|TcMar?	-11685	NR_125417	101927459	Hs.575543	NR_125416	ENSG00000253877	LINC01608	-	long intergenic non-protein coding RNA 1608	ncRNA
1.40261-4	chrX	13670988	13671487	+	0	NA	promoter-TSS (NM_001297563)	promoter-TSS (NM_001297563)	12	NM_001297564	170082	Hs.222855	NM_152634	ENSG00000176896	TCEANC	-	transcription elongation factor A N-terminal and central domain containing	protein-coding
19.7469-3	chr1	9920884	9921383	+	0	NA	intron (NM_001012329, intron 4 of 4)	intron (NM_001012329, intron 4 of 4)	-36549	NM_001009566	22883	Hs.29665	NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
0.985417-8	chr3	72846823	72847322	+	0	NA	intron (NM_018130, intron 9 of 10)	intron (NM_018130, intron 9 of 10)	50526	NM_018130	55164	Hs.606584	NM_018130	ENSG00000144736	SHQ1	GRIM-1|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
0.199966-6	chr2	27631702	27632201	+	0	NA	intron (NM_177983, intron 1 of 9)	CpG	599	NM_177983	5496	Hs.643951	NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
7.59451-2	chr8	67814983	67815482	+	0	NA	intron (NM_001136160, intron 13 of 13)	AluSq2|SINE|Alu	19552	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
5.85027-2	chr7	73986867	73987366	+	0	NA	intron (NM_001199207, intron 22 of 26)	intron (NM_001199207, intron 22 of 26)	-84875	NM_001163636	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
26.9897	chr15	68132333	68132832	+	0	NA	promoter-TSS (NR_125730).5	promoter-TSS (NR_125730).5	-199	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
5.05845-4	chr9	95570883	95571799	+	0	NA	promoter-TSS (NR_026868)	promoter-TSS (NR_026868)	-552	NR_026868	138649	Hs.643597	NM_001010925	ENSG00000187984	ANKRD19P	ANKRD19|bA526D8.2	ankyrin repeat domain 19, pseudogene	pseudo
0.899095-13	chr11	67232028	67232527	+	0	NA	exon (NM_001078650, exon 5 of 6)	exon (NM_001078650, exon 5 of 6)	4471	NR_073413	80194	Hs.288761	NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
0.0921731-2	chr1	212686513	212687012	+	0	NA	Intergenic	MIRb|SINE|MIR	-32274	NR_125985	101929565		NR_125985	ENSG00000228067	LINC01740	-	long intergenic non-protein coding RNA 1740	ncRNA
0.0261362-20	chr3	67048316	67048815	+	0	NA	promoter-TSS (NM_032505)	promoter-TSS (NM_032505)	-162	NM_032505	84541	Hs.116665	NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
4.30626-4	chr2	96931910	96932409	+	0	NA	promoter-TSS (NM_001193304)	promoter-TSS (NM_001193304)	275	NM_004804	9391	Hs.12109	NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
23.0539-3	chr6	26706150	26706649	+	0	NA	Intergenic	L1MEf|LINE|L1	-46419	NM_001242798	79692	Hs.126280	NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
1.34896-2	chr8	113628648	113629147	+	0	NA	intron (NM_052900, intron 21 of 68)	LTR75B|LTR|ERVL	-26825	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	ncRNA
4.92144-10	chr8	140716388	140716887	+	0	NA	Intergenic	CpG-26022	-1338	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
28.4164-2	chr17	65611359	65611858	+	0	NA	intron (NM_181671, intron 5 of 9)	intron (NM_181671, intron 5 of 9)	-102341	NM_015462	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
4.58421-6	chr5	143039042	143039541	+	0	NA	Intergenic	Intergenic	-20134	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
6.9897-10	chr2	122512814	122513313	+	0	NA	promoter-TSS (NM_004622)	promoter-TSS (NM_004622)	-58	NM_001261401	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
0.245682-29	chr18	43996557	43997056	+	0	NA	intron (NM_001256758, intron 1 of 5)	MLT1H|LTR|ERVL-MaLR	82619	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
4.17937-13	chr22	39706922	39707421	+	0	NA	Intergenic	Intergenic	2745	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
5.5752	chr12	133083238	133083737	+	0	NA	intron (NM_001142641, intron 1 of 16)	intron (NM_001142641, intron 1 of 16)	16330	NM_001142641	57666	Hs.411138	NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
15.7675-6	chr1	167155442	167155941	+	0	NA	intron (NR_110811, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	9351	NR_110811	101928484	Hs.568496	NR_110811		LINC01363	RBSG4	long intergenic non-protein coding RNA 1363	ncRNA
4.59671-10	chr11	109016291	109016790	+	0	NA	Intergenic	SVA_B|Other|Other	-276306	NM_207645	399947	Hs.172982	NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
4.59671-7	chr1	10737953	10738452	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	118531	NM_017766	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
3.61511-6	chr14	36413974	36414473	+	0	NA	Intergenic	LTR16C|LTR|ERVL	118626	NM_032352	84312	Hs.525299	NM_032352	ENSG00000100916	BRMS1L	BRMS1	breast cancer metastasis-suppressor 1-like	protein-coding
33.6957	chr18	67302118	67303062	+	0	NA	intron (NM_152721, intron 3 of 7)	LTR16E2|LTR|ERVL	165423	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
2.78189-12	chr1	192777161	192777660	+	0	NA	promoter-TSS (NM_002923)	promoter-TSS (NM_002923)	-759	NM_002923	5997	Hs.78944	NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G-protein signaling 2	protein-coding
7.72113-5	chr9	73028285	73028784	+	0	NA	5' UTR (NM_001206, exon 1 of 2)	5' UTR (NM_001206, exon 1 of 2)	1039	NM_001206	687	Hs.150557	NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	Kruppel like factor 9	protein-coding
2.16811-8	chr11	19567716	19568215	+	0	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	-22340	NR_033989	399876	Hs.132600	NR_033989	ENSG00000254622	NAV2-AS4	-	NAV2 antisense RNA 4	ncRNA
1.85087-9	chr13	50243772	50244271	+	0	NA	intron (NM_032565, intron 1 of 3)	intron (NM_032565, intron 1 of 3)	21602	NR_103803	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein like	protein-coding
0.550241-29	chr1	157015972	157016471	+	0	NA	Intergenic	CpG	-1059	NM_198236	9826	Hs.516954	NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor 11	protein-coding
1.86419-19	chr15	96596055	96596554	+	0	NA	Intergenic	Intergenic	-272853	NM_001145155	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
0.985417-17	chr9	111230555	111231054	+	0	NA	Intergenic	MER66C|LTR|ERV1	387471	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
0.181814-18	chr9	8486095	8486594	+	0	NA	exon (NM_002839, exon 28 of 46)	exon (NM_002839, exon 28 of 46)	247602	NM_130393	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
0.254883-2	chr8	142083745	142084244	+	0	NA	Intergenic	Intergenic	-54726	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
2.97569-8	chr1	85358160	85358659	+	0	NA	intron (NM_012152, intron 1 of 2)	CpG	487	NM_012152	23566	Hs.527909	NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
2.38072-4	chr13	23432543	23433042	+	0	NA	Intergenic	SVA_D|Other|Other	39528	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	brain abundant, membrane attached signal protein 1 pseudogene 1	pseudo
0.909791-7	chr4	12138726	12139225	+	0	NA	Intergenic	Intergenic	-86100	NR_125910	101929019	Hs.434234	NR_125910	ENSG00000251210	LOC101929019	-	uncharacterized LOC101929019	ncRNA
5.27244-2	chr11	8986207	8986706	+	0	NA	promoter-TSS (NM_001286094)	promoter-TSS (NM_001286094)	102	NM_001286095	56674	Hs.501853	NM_020644	ENSG00000175348	TMEM9B	C11orf15	TMEM9 domain family member B	protein-coding
12.5571-2	chr7	107485269	107485768	+	0	NA	Intergenic	Intergenic	-41840	NM_000111	1811	Hs.1650	NM_000111	ENSG00000091138	SLC26A3	CLD|DRA	solute carrier family 26 member 3	protein-coding
0.0788851-22	chr14	103369098	103369597	+	0	NA	intron (NM_001199427, intron 6 of 7)	intron (NM_001199427, intron 6 of 7)	-19646	NM_030943	81693	Hs.534494	NM_030943	ENSG00000166126	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
6.27088-2	chr11	111749564	111750063	+	0	NA	promoter-TSS (NM_022761)	promoter-TSS (NM_022761)	-135	NM_001330371	64776	Hs.17546	NM_022761	ENSG00000137720	C11orf1	-	chromosome 11 open reading frame 1	protein-coding
2.17527-10	chr8	143484537	143485036	+	0	NA	promoter-TSS (NM_145003)	promoter-TSS (NM_145003)	-176	NM_145003	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
4.43697-9	chr12	3807282	3807781	+	0	NA	intron (NM_032680, intron 3 of 10)	intron (NM_032680, intron 3 of 10)	54835	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
8.47712-6	chr18	23407230	23407729	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	263132	NM_005637	6760	Hs.129261	NM_005637	ENSG00000141380	SS18	SSXT|SYT	SS18, nBAF chromatin remodeling complex subunit	protein-coding
0.952845-25	chr2	36583270	36583769	+	0	NA	promoter-TSS (NR_037631)	promoter-TSS (NR_037631)	149	NM_016441	51232	Hs.699247	NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
22.2548	chr8	134737349	134737848	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-41289	NR_134462	105375773	Hs.445172	NR_134462		LOC105375773	-	uncharacterized LOC105375773	ncRNA
0.883098-7	chr2	145956610	145957109	+	0	NA	Intergenic	Intergenic	531325	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
0.241089-31	chr4	72051920	72052419	+	0	NA	promoter-TSS (NM_001098484)	promoter-TSS (NM_001098484)	-834	NM_001098484	8671	Hs.5462	NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
0.241089-25	chr9	118918755	118919254	+	0	NA	intron (NM_002581, intron 1 of 21)	intron (NM_002581, intron 1 of 21)	2933	NM_002581	5069	Hs.643599	NM_002581	ENSG00000182752	PAPPA	ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1	pappalysin 1	protein-coding
0.0612309-39	chr3	23852143	23852642	+	0	NA	intron (NM_001202476, intron 1 of 4)	CpG	458	NM_001202476	7324	Hs.164853	NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
1.61151-9	chr6	43961736	43962235	+	0	NA	Intergenic	Intergenic	-6352	NM_153246	221416	Hs.531926	NM_153246	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
29.7881	chr2	131094774	131095273	+	0	NA	TTS (NM_001321118)	TTS (NM_001321118)	4658	NM_001321119	84317	Hs.104203	NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
0.79355-30	chr4	2819547	2820046	+	0	NA	promoter-TSS (NM_003023)	promoter-TSS (NM_003023)	-116	NM_001145856	6452	Hs.167679	NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
7.52027-11	chr17	48680540	48681039	+	0	NA	intron (NM_001256325, intron 21 of 35)	intron (NM_001256325, intron 21 of 35)	-31429	NM_003786	8714	Hs.463421	NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
0.136762-15	chr19	41076408	41076907	+	0	NA	intron (NM_020971, intron 33 of 35)	intron (NM_020971, intron 33 of 35)	-6100	NM_138392	92799	Hs.26506	NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
0.163737-34	chr3	16306043	16306542	+	0	NA	promoter-TSS (NM_138381)	promoter-TSS (NM_138381)	204	NM_206831	285381	Hs.388087	NM_206831	ENSG00000154813	DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
18.8941-8	chr7	146995598	146996097	+	0	NA	intron (NM_014141, intron 8 of 23)	MER58B|DNA|hAT-Charlie	79366	NR_031645	100313895		NR_031645	ENSG00000221442	MIR548F4	MIR548F-4|MIRN548F4|hsa-mir-548f-4	microRNA 548f-4	ncRNA
20.7935	chr4	182068493	182068992	+	0	NA	intron (NR_033918, intron 2 of 2)	intron (NR_033918, intron 2 of 2)	11560	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
3.05395-15	chr2	92226657	92227156	+	0	NA	Intergenic	Intergenic	97747	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
0.443122-6	chr19	56028202	56028701	+	0	NA	intron (NM_001144950, intron 13 of 13)	CpG	19984	NM_001101401	646643	Hs.532676	NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family member 2	protein-coding
3.72634-6	chr11	14587705	14588204	+	0	NA	intron (NM_148976, intron 2 of 10)	L2a|LINE|L2	-45963	NM_001143937	5682	Hs.102798	NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome subunit alpha 1	protein-coding
0.624821-26	chr6	127839348	127839847	+	0	NA	intron (NM_001012279, intron 1 of 11)	intron (NM_001012279, intron 1 of 11)	903	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
4.19075-3	chr12	3345870	3346369	+	0	NA	intron (NM_006675, intron 3 of 8)	L2b|LINE|L2	-144396	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
0.254883-42	chr12	102799668	102800167	+	0	NA	intron (NM_000618, intron 3 of 3)	intron (NM_000618, intron 3 of 3)	72512	NM_001111284	3479	Hs.160562	NM_000618	ENSG00000017427	IGF1	IGF-I|IGFI|MGF	insulin like growth factor 1	protein-coding
14.3415-2	chr14	71649782	71650281	+	0	NA	Intergenic	Intergenic	-215023	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
0.700704-8	chr2	64115841	64116340	+	0	NA	intron (NM_001001521, intron 8 of 9)	intron (NM_001001521, intron 8 of 9)	47076	NM_006759	7360	Hs.516217	NM_006759	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
2.83162-2	chr11	20669449	20669948	+	0	NA	intron (NM_004211, intron 14 of 15)	intron (NM_004211, intron 14 of 15)	-21399	NM_001288713	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
3.34419-12	chr2	136874979	136875478	+	0	NA	intron (NM_003467, intron 1 of 1)	CpG	497	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
1.29011-17	chr9	139964687	139965186	+	0	NA	promoter-TSS (NM_178448)	promoter-TSS (NM_178448)	92	NM_178448	89958	Hs.19322	NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
0.070049-14	chr2	242312800	242313299	+	0	NA	intron (NM_014808, intron 2 of 26)	intron (NM_014808, intron 2 of 26)	17385	NM_014808	9855	Hs.726316	NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
9.66576-22	chr17	198335	198834	+	0	NA	intron (NM_006987, intron 1 of 9)	intron (NM_006987, intron 1 of 9)	4049	NM_001190413	9501	Hs.651925	NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A-like (without C2 domains)	protein-coding
0.619809-7	chr21	28216664	28217163	+	0	NA	exon (NM_006988, exon 1 of 9)	exon (NM_006988, exon 1 of 9)	815	NM_006988	9510	Hs.643357	NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
0.11441-5	chr17	37300654	37301153	+	0	NA	intron (NM_020405, intron 1 of 13)	intron (NM_020405, intron 1 of 13)	6999	NM_020405	57125	Hs.125036	NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
2.00659	chr7	151572197	151572696	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-1681	NR_038926	100505483	Hs.649054	NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
0.599818-19	chr6	3403387	3403886	+	0	NA	intron (NM_001286456, intron 3 of 3)	intron (NM_001286456, intron 3 of 3)	41611	NM_021945	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
4.05607-11	chr14	90167914	90168413	+	0	NA	Intergenic	CpG	-82669	NM_001085471	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
0.241089-35	chr9	4491199	4491698	+	0	NA	intron (NM_004170, intron 1 of 11)	intron (NM_004170, intron 1 of 11)	1021	NM_004170	6505	Hs.444915	NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18	solute carrier family 1 member 1	protein-coding
5.24329	chr1	87876289	87876788	+	0	NA	Intergenic	Intergenic	-39200	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
2.47184-11	chr2	100106450	100106949	+	0	NA	promoter-TSS (NM_001037872)	promoter-TSS (NM_001037872)	-181	NM_016316	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
9.914-2	chr7	4639531	4640030	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-82150	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
0.366845-6	chr3	167968039	167968538	+	0	NA	intron (NR_021485, intron 1 of 15)	intron (NR_021485, intron 1 of 15)	978	NR_021485	93556	Hs.478158	NR_021485		EGFEM1P	C3orf50|NCRNA00259	EGF like and EMI domain containing 1, pseudogene	pseudo
0.736576-30	chr19	17607022	17607521	+	0	NA	intron (NM_198580, intron 6 of 11)	intron (NM_198580, intron 6 of 11)	-15161	NM_012088	25796	Hs.466165	NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
11.2436	chr17	65581071	65581570	+	0	NA	intron (NM_181671, intron 5 of 9)	L2a|LINE|L2	-113619	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
0.925886-19	chr9	96374969	96375468	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	18095	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
7.47147-6	chr4	41055	41554	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-11875	NM_001286054	152687	Hs.709469	NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
1.89767-8	chr12	88429190	88429689	+	0	NA	exon (NM_001009894, exon 1 of 7)	exon (NM_001009894, exon 1 of 7)	171	NM_001009894	91298	Hs.591009	NM_001009894	ENSG00000133641	C12orf29	-	chromosome 12 open reading frame 29	protein-coding
0.338583-35	chr1	181135621	181136120	+	0	NA	Intergenic	Intergenic	-7750	NR_125966	101928973	Hs.637822	NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
0.329203-15	chr5	55529011	55529510	+	0	NA	promoter-TSS (NM_024669)	promoter-TSS (NM_024669)	-74	NM_024669	79722	Hs.436214	NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
1.79799-23	chr19	925289	925788	+	0	NA	promoter-TSS (NM_005224)	promoter-TSS (NM_005224)	-499	NM_005224	1820	Hs.501296	NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
0.0744648-32	chr14	92719729	92720228	+	0	NA	Intergenic	MIRb|SINE|MIR	-68947	NM_153648	123041	Hs.385530	NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
3.01899-2	chr9_gl000199_random	147215	147714	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2.91579-6	chr5	168304363	168304862	+	0	NA	intron (NM_003062, intron 5 of 35)	intron (NM_003062, intron 5 of 35)	-109352	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
5.0307	chr8	125052808	125053307	+	0	NA	promoter-TSS (NR_040044)	promoter-TSS (NR_040044)	-34	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
0.11441-10	chr13	114054929	114055428	+	0	NA	3' UTR (NM_001304433, exon 2 of 2)	3' UTR (NM_001304433, exon 2 of 2)	13530	NM_001304433	101928841	Hs.646609	NM_001003399		LOC101928841	-	collagen alpha-1(II) chain-like	protein-coding
9.62574-23	chr4	181434225	181434724	+	0	NA	Intergenic	Intergenic	645828	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
0.594835-17	chr3	129776115	129776614	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-24310	NM_001136152	644974	Hs.722197	NM_001136152	ENSG00000251287	ALG1L2	-	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase like 2	protein-coding
2.79014-24	chr11	124709691	124710190	+	0	NA	Intergenic	CpG	-25365	NM_022370	64221	Hs.435621	NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
0.0833099-28	chr8	53425972	53426471	+	0	NA	Intergenic	Intergenic	51800	NM_207413	389658	Hs.527111	NM_207413	ENSG00000196711	FAM150A	AUGA|AUGB|UNQ9433	family with sequence similarity 150 member A	protein-coding
2.95849-12	chr11	3187793	3188292	+	0	NA	Intergenic	Intergenic	-1460	NM_001144063	114879	Hs.436166	NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
1.22053-21	chr14	102227499	102227998	+	0	NA	promoter-TSS (NM_001161725)	promoter-TSS (NM_001161725)	-387	NM_001161725	5527	Hs.368264	NM_002719	ENSG00000078304	PPP2R5C	B56G|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
0.186345-14	chr21	34508144	34508643	+	0	NA	Intergenic	Intergenic	-12387	NR_109961	101928107	Hs.382669	NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
0.589858-22	chr20	5509488	5509987	+	0	NA	Intergenic	Intergenic	-19089	NR_109860	101929207	Hs.516871	NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
4.11168-2	chr11	110185293	110185792	+	0	NA	Intergenic	AluSg|SINE|Alu	-18105	NM_002906	5962	Hs.263671	NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
0.123337-12	chr7	155006076	155006575	+	0	NA	Intergenic	Intergenic	-83157	NM_001346590	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
3.00162-12	chrUn_gl000219	50598	51097	+	0	NA	intron (NR_134504, intron 1 of 2)	intron (NR_134504, intron 1 of 2)	5450	NR_134504	105379477	Hs.702270	NR_134504		LOC105379477	-	uncharacterized LOC105379477	ncRNA
11.7783-2	chr8	56901376	56901875	+	0	NA	intron (NM_002350, intron 10 of 12)	intron (NM_002350, intron 10 of 12)	84835	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
0.222764-9	chr12	93964649	93965148	+	0	NA	promoter-TSS (NM_001270470)	promoter-TSS (NM_001270470)	141	NM_001270468	8835	Hs.485572	NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
6.81937-20	chr5	490833	491332	+	0	NA	intron (NM_004174, intron 2 of 16)	intron (NM_004174, intron 2 of 16)	17731	NR_125375	100288152	Hs.535801	NR_125375		LOC100288152	-	uncharacterized LOC100288152	ncRNA
1.79142-4	chr2	85829619	85830738	+	0	NA	promoter-TSS (NR_033179)	promoter-TSS (NR_033179)	213	NR_046347	10713	Hs.654745	NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
0.141246-9	chr4	187111647	187112146	+	0	NA	promoter-TSS (NM_207352)	promoter-TSS (NM_207352)	748	NR_046264	651430	Hs.727796	NR_046264	ENSG00000279943	FLJ38576	-	uncharacterized LOC651430	ncRNA
10.2826-2	chr1	231114512	231115011	+	0	NA	promoter-TSS (NM_001122835)	promoter-TSS (NM_001122835)	-34	NM_001346992	64801	Hs.275736	NM_022786	ENSG00000173409	ARV1	EIEE38	ARV1 homolog, fatty acid homeostasis modulator	protein-coding
6.75718-9	chr11	45307588	45308087	+	0	NA	promoter-TSS (NM_001247987)	promoter-TSS (NM_001247987)	47	NM_020826	57586	Hs.436643	NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding
7.28158-7	chr5	317181	317680	+	0	NA	intron (NM_020731, intron 1 of 11)	intron (NM_020731, intron 1 of 11)	13139	NM_020731	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
0.925886-3	chr5	155108123	155108622	+	0	NA	Intergenic	CpG	-645395	NM_172244	6444	Hs.387207	NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
2.37321-4	chr19	36477896	36478395	+	0	NA	Intergenic	CpG	-7945	NM_001042631	644096	Hs.356460	NM_001042631	ENSG00000205138	SDHAF1	LYRM8	succinate dehydrogenase complex assembly factor 1	protein-coding
0.963675	chr20	3190215	3190714	+	0	NA	intron (NM_001267623, intron 1 of 5)	CpG	458	NR_052001	3704	Hs.415299	NM_033453	ENSG00000125877	ITPA	C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
2.57275-4	chr16	57512975	57513474	+	0	NA	intron (NM_001330556, intron 1 of 6)	intron (NM_001330556, intron 1 of 6)	555	NM_001330556	55715	Hs.279832	NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
12.8735-3	chr4	40338969	40339468	+	0	NA	intron (NM_017581, intron 2 of 4)	intron (NM_017581, intron 2 of 4)	1872	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
0.132283-6	chr5	96304252	96304751	+	0	NA	intron (NM_175920, intron 1 of 17)	intron (NM_175920, intron 1 of 17)	10345	NM_175920	4012	Hs.527199	NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
2.26214-20	chr6	13814110	13814984	+	0	NA	exon (NM_001031713, exon 1 of 9)	exon (NM_001031713, exon 1 of 9)	245	NM_001031713	63933	Hs.214043	NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
0.634863-4	chr6	24403029	24403528	+	0	NA	exon (NM_001286266, exon 1 of 9)	exon (NM_001286266, exon 1 of 9)	142	NM_001286265	57380	Hs.658612	NM_020662	ENSG00000124532	MRS2	HPT|MRS2L	MRS2, magnesium transporter	protein-coding
1.70696	chr2	27063741	27064240	+	0	NA	Intergenic	MIRb|SINE|MIR	-6979	NM_020134	56896	Hs.299315	NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase like 5	protein-coding
0.716041-4	chrUn_gl000214	59030	59529	+	0	NA	NA	MER61C|LTR|ERV1	NA	NA								
0.419142-23	chr6	142621949	142622448	+	0	NA	promoter-TSS (NM_020455)	promoter-TSS (NM_020455)	-858	NM_001032395	57211	Hs.743302	NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
9.82967-5	chr10	84214945	84215444	+	0	NA	intron (NM_001165973, intron 3 of 10)	Tigger3b|DNA|TcMar-Tigger	-222518	NR_120666	101929590	Hs.733268	NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA
0.462403-10	chr4	82235621	82236120	+	0	NA	Intergenic	Intergenic	-99599	NM_006259	5593	Hs.232044	NM_006259	ENSG00000138669	PRKG2	PRKGR2|cGK2|cGKII	protein kinase, cGMP-dependent, type II	protein-coding
15.6703-2	chr13	52187672	52188171	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	29437	NM_052950	115825	Hs.46506	NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
8.32683	chr7	29332516	29333015	+	0	NA	intron (NM_001293070, intron 2 of 13)	L2|LINE|L2	-84179	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
2.18245-6	chr6	130936863	130937362	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	178850	NM_052913	114801	Hs.591341	NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
0.172766-5	chr9	133966957	133967456	+	0	NA	3' UTR (NM_006059, exon 28 of 28)	3' UTR (NM_006059, exon 28 of 28)	-4657	NM_001185095	83543	Hs.4944	NM_031426	ENSG00000126878	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1 like	protein-coding
2.33587-9	chr7	95099104	95099603	+	0	NA	Intergenic	Intergenic	-15860	NM_016116	51666	Hs.602765	NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
0.788339-10	chr11	1224240	1224739	+	0	NA	Intergenic	Intergenic	-19806	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
29.2445	chr14	50464678	50465177	+	0	NA	TTS (NR_126500)	TTS (NR_126500)	-5075	NR_126499	283551	Hs.292580	NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
7.90485-10	chr18	43247360	43247859	+	0	NA	intron (NM_007163, intron 13 of 19)	intron (NM_007163, intron 13 of 19)	52843	NM_007163	8170	Hs.710927	NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
4.55932-9	chr6	3259710	3260209	+	0	NA	intron (NM_001128592, intron 1 of 3)	L2|LINE|L2	797	NM_001128592	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
0.584886-7	chr11	9781077	9781576	+	0	NA	promoter-TSS (NR_033972)	promoter-TSS (NR_033972)	-246	NR_033972	440028	Hs.677541	NR_033972	ENSG00000245522	LOC440028	-	uncharacterized LOC440028	ncRNA
22.644	chr18	51795606	51796105	+	0	NA	promoter-TSS (NM_007195)	promoter-TSS (NM_007195)	6	NM_007195	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB	DNA polymerase iota	protein-coding
2.55707-3	chr2	68181192	68181691	+	0	NA	Intergenic	Intergenic	108718	NM_006333	10438	Hs.602900	NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
2.45652-2	chr14	77278901	77279400	+	0	NA	exon (NM_015305, exon 1 of 10)	exon (NM_015305, exon 1 of 10)	133	NM_015305	23357	Hs.497448	NM_015305	ENSG00000013523	ANGEL1	Ccr4e|KIAA0759	angel homolog 1	protein-coding
2.05512-4	chr12	28764924	28765423	+	0	NA	Intergenic	Intergenic	421813	NM_018318	55297	Hs.653125	NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding
6.53647	chr8	16859209	16859708	+	0	NA	exon (NM_019851, exon 1 of 3)	exon (NM_019851, exon 1 of 3)	216	NM_019851	26281	Hs.199905	NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
3.74688	chr5	5332414	5332913	+	0	NA	Intergenic	Intergenic	-90123	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
5.62249-16	chr17	47866349	47866848	+	0	NA	intron (NM_001346706, intron 1 of 13)	CpG	617	NM_001199156	11143	Hs.21907	NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
0.599818-33	chrX	37771503	37772002	+	0	NA	Intergenic	MamRep605|Unknown|Unknown	-64863	NM_006520	6990	Hs.446392	NM_006520	ENSG00000165169	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein light chain Tctex-type 3	protein-coding
1.58641-8	chr11	61657960	61658459	+	0	NA	intron (NM_021727, intron 1 of 11)	intron (NM_021727, intron 1 of 11)	808	NM_021727	3995	Hs.21765	NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
2.00659-9	chr16	67281080	67281579	+	0	NA	promoter-TSS (NM_013241)	promoter-TSS (NM_013241)	96	NM_013241	29109	Hs.95231	NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
18.7615-9	chr6	5636813	5637312	+	0	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	58443	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
1.41463-25	chr17	3860052	3860551	+	0	NA	intron (NM_174958, intron 1 of 22)	MIRb|SINE|MIR	7457	NM_005173	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
43.3819	chr20	53241539	53242038	+	0	NA	intron (NM_177959, intron 6 of 7)	intron (NM_177959, intron 6 of 7)	149531	NM_177959	55816	Hs.473133	NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
0.942041-9	chr7	1609445	1609944	+	0	NA	promoter-TSS (NM_032302)	promoter-TSS (NM_032302)	-15	NR_021487	114796	Hs.436146	NR_021487	ENSG00000230487	PSMG3-AS1	-	PSMG3 antisense RNA 1 (head to head)	ncRNA
2.62013-13	chr2	27309183	27309682	+	0	NA	promoter-TSS (NM_006488)	promoter-TSS (NM_006488)	-179	NM_006488	3795	Hs.567297	NM_000221	ENSG00000138030	KHK	-	ketohexokinase	protein-coding
3.18759-12	chr2	46843961	46844460	+	0	NA	promoter-TSS (NM_014171)	promoter-TSS (NM_014171)	41	NM_173074	5281	Hs.468415	NM_002643	ENSG00000151665	PIGF	-	phosphatidylinositol glycan anchor biosynthesis class F	protein-coding
3.22393-19	chr11	68890099	68890598	+	0	NA	Intergenic	Intergenic	39704	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
11.5304	chr5	73502541	73503040	+	0	NA	Intergenic	Intergenic	101360	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
9.74694-7	chr5	1609116	1609615	+	0	NA	intron (NR_003713, intron 2 of 3)	L1ME3E|LINE|L1	-14719	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
5.28708-4	chr16	85495767	85496266	+	0	NA	Intergenic	Intergenic	-149013	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
37.4715	chr12	115122333	115122832	+	0	NA	promoter-TSS (NM_005996)	promoter-TSS (NM_005996)	-613	NM_016569	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
0.0305075-10	chr14	57221623	57222369	+	0	NA	Intergenic	Intergenic	50385	NM_001270525	5015	Hs.288655	NM_021728	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding
0.199966-18	chr3	196752266	196752765	+	0	NA	intron (NM_005929, intron 3 of 15)	L2b|LINE|L2	4171	NM_033316	4241	Hs.184727	NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
3.20572-10	chr10	51371002	51371501	+	0	NA	promoter-TSS (NM_001290118)	promoter-TSS (NM_001290118)	93	NR_029388	728407	Hs.499594	NR_029388		PARGP1	-	poly(ADP-ribose) glycohydrolase pseudogene 1	pseudo
0.199966-4	chr3	192232422	192232921	+	0	NA	promoter-TSS (NR_046598)	promoter-TSS (NR_046598)	-140	NR_046598	100873988	Hs.628012	NR_046598		FGF12-AS3	-	FGF12 antisense RNA 3	ncRNA
0.550241-21	chr1	55440941	55441440	+	0	NA	Intergenic	Intergenic	-5147	NM_182532	199964	Hs.663950	NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
4.25969-13	chr20	20442694	20443193	+	0	NA	intron (NM_020343, intron 37 of 39)	intron (NM_020343, intron 37 of 39)	94178	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
0.535477-7	chr3	117349656	117350155	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	709627	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
3.92545-6	chr11	10813942	10814441	+	0	NA	Intergenic	Intergenic	8964	NR_004403	692223	Hs.723086	NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
9.43095	chr8	80677557	80678056	+	0	NA	exon (NM_001282851, exon 2 of 2)	exon (NM_001282851, exon 2 of 2)	904	NM_001282851	23462	Hs.234434	NM_012258	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|OAF1|hHRT1	hes related family bHLH transcription factor with YRPW motif 1	protein-coding
0.594835-7	chr20	61273346	61273845	+	0	NA	promoter-TSS (NM_016354)	promoter-TSS (NM_016354)	-202	NM_016354	28231	Hs.235782	NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
0.268721-60	chr6	147374425	147374924	+	0	NA	intron (NR_034115, intron 5 of 10)	intron (NR_034115, intron 5 of 10)	-105387	NR_132442	106182249	Hs.575390	NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA
1.2436-2	chr18	12883735	12884234	+	0	NA	intron (NM_001207013, intron 1 of 10)	CpG	350	NM_001207013	5771	Hs.654527	NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
13.8195-2	chr8	140255396	140255895	+	0	NA	Intergenic	Intergenic	-329396	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
6.69586	chr18	72919154	72919653	+	0	NA	intron (NM_175907, intron 1 of 1)	intron (NM_175907, intron 1 of 1)	1900	NM_175907	284273	Hs.465433	NM_175907	ENSG00000180011	ZADH2	PRG-3	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
1.22053	chr19	934799	935298	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	9011	NM_005224	1820	Hs.501296	NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
0.721166-9	chr2	97778226	97778725	+	0	NA	promoter-TSS (NM_001164315)	promoter-TSS (NM_001164315)	-758	NM_001164315	375248	Hs.541894	NM_198555	ENSG00000135976	ANKRD36	UNQ2430	ankyrin repeat domain 36	protein-coding
11.4997-3	chr12	27885149	27885648	+	0	NA	intron (NM_001190864, intron 5 of 6)	intron (NM_001190864, intron 5 of 6)	21692	NM_021821	60488	Hs.714076	NM_021821	ENSG00000061794	MRPS35	HDCMD11P|MDS023|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding
12.3136	chr13	111792404	111792903	+	0	NA	intron (NM_001113512, intron 1 of 17)	L2a|LINE|L2	8259	NR_046516	100874226	Hs.577834	NR_046516		ARHGEF7-AS1	-	ARHGEF7 antisense RNA 1	ncRNA
6.47817-15	chr17	44235611	44236110	+	0	NA	intron (NM_001193465, intron 3 of 15)	AluSz6|SINE|Alu	34306	NM_001193466	284058	Hs.648744	NM_015443	ENSG00000120071	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
9.17215-6	chr8	38592196	38592695	+	0	NA	intron (NM_001330521, intron 1 of 12)	intron (NM_001330521, intron 1 of 12)	6741	NM_001146216	6867	Hs.279245	NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
1.38466-18	chr12	53688839	53689338	+	0	NA	promoter-TSS (NM_145897)	promoter-TSS (NM_145897)	-147	NM_145897	5204	Hs.655327	NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
0.51587-16	chr17	80204514	80205013	+	0	NA	intron (NM_139062, intron 8 of 9)	intron (NM_139062, intron 8 of 9)	10219	NR_106845	102465472		NR_106845	ENSG00000141526	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
0.629839-19	chr14	51422373	51422872	+	0	NA	Intergenic	Intergenic	-11374	NM_002863	5836	Hs.282417	NM_002863	ENSG00000100504	PYGL	GSD6	glycogen phosphorylase L	protein-coding
1.20331-16	chr10	117723331	117723830	+	0	NA	Intergenic	MIRb|SINE|MIR	308239	NM_145793	2674	Hs.388347	NM_005264	ENSG00000151892	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
4.38899-3	chr2	105826077	105826576	+	0	NA	Intergenic	SVA_E|Other|Other	-31874	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
0.2365	chr16	81633124	81633623	+	0	NA	intron (NM_030629, intron 1 of 20)	MIR|SINE|MIR	-11580	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
6.03801-6	chr12	28122833	28123332	+	0	NA	promoter-TSS (NM_198966)	promoter-TSS (NM_198966)	-188	NM_198966	5744	Hs.591159	NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
2.51037-11	chr18	22182159	22182658	+	0	NA	Intergenic	Intergenic	-25738	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LINC01915	-	long intergenic non-protein coding RNA 1915	ncRNA
4.31798-9	chr3	174991765	174992264	+	0	NA	intron (NM_207015, intron 4 of 13)	THE1B|LTR|ERVL-MaLR	-3129	NR_046713	100874244	Hs.581176	NR_046713		NAALADL2-AS2	-	NAALADL2 antisense RNA 2	ncRNA
2.99296-5	chr14	90983854	90984353	+	0	NA	promoter-TSS (NR_135274)	promoter-TSS (NR_135274)	-550	NR_135274	105370619	Hs.525530	NR_135274		LOC105370619	-	uncharacterized LOC105370619	ncRNA
1.89096-8	chr14	105486815	105487314	+	0	NA	intron (NM_145701, intron 1 of 2)	CpG	361	NM_017955	55038	Hs.34045	NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
0.76756-14	chr13	96296736	96297235	+	0	NA	promoter-TSS (NM_014934)	promoter-TSS (NM_014934)	-25	NM_198968	22873	Hs.656580	NM_014934	ENSG00000134874	DZIP1	DZIP|DZIPt1	DAZ interacting zinc finger protein 1	protein-coding
0.736576-8	chr3	45883401	45883900	+	0	NA	promoter-TSS (NM_020347)	promoter-TSS (NM_020347)	0	NR_075080	54585	Hs.30824	NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
11.0347	chr13	104024824	104025323	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-52477	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
0.550241-31	chr8	120521813	120522312	+	0	NA	Intergenic	Intergenic	83186	NR_045555	5168	Hs.190977	NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
4.74955-8	chr10	123924344	123924843	+	0	NA	intron (NM_001291878, intron 1 of 16)	intron (NM_001291878, intron 1 of 16)	1652	NM_206860	10579	Hs.501252	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	transforming acidic coiled-coil containing protein 2	protein-coding
0.985417-15	chr11	128392310	128392809	+	0	NA	promoter-TSS (NM_005238)	promoter-TSS (NM_005238)	-263	NM_001330451	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
1.11821-16	chr6	170588919	170589754	+	0	NA	TTS (NR_104177)	TTS (NR_104177)	-3486	NR_126021	285804	Hs.651959	NR_126021	ENSG00000271820	LOC285804	-	uncharacterized LOC285804	ncRNA
4.67246-10	chr13	28674574	28675073	+	0	NA	promoter-TSS (NM_004119)	promoter-TSS (NM_004119)	-94	NM_004119	2322	Hs.507590	NM_004119	ENSG00000122025	FLT3	CD135|FLK-2|FLK2|STK1	fms related tyrosine kinase 3	protein-coding
0.00434512-21	chr3	184243623	184244122	+	0	NA	Intergenic	Intergenic	30834	NR_046593	100874079	Hs.574899	NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
2.40332-2	chr9	135457390	135457889	+	0	NA	promoter-TSS (NM_020064)	promoter-TSS (NM_020064)	-354	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
0.467237-30	chr6	143771299	143772108	+	0	NA	promoter-TSS (NM_003630)	promoter-TSS (NM_003630)	138	NM_182503	134637	Hs.709561	NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase, tRNA specific 2	protein-coding
7.12198-4	chr4	173960045	173960544	+	0	NA	intron (NM_001034845, intron 12 of 12)	intron (NM_001034845, intron 12 of 12)	-129610	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
2.8735-13	chr10	43447714	43448213	+	0	NA	Intergenic	Intergenic	28992	NR_126352	104266963	Hs.559152	NR_126352	ENSG00000229630	LINC01264	-	long intergenic non-protein coding RNA 1264	ncRNA
3.09804-2	chr7	1079347	1079846	+	0	NA	intron (NM_032350, intron 2 of 4)	SVA_F|Other|Other	-4613	NM_001303473	115330	Hs.585007	NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
1.43271-28	chr11	32112756	32113255	+	0	NA	intron (NM_002901, intron 1 of 5)	CpG	528	NM_002901	5954	Hs.97887	NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
14.828-4	chr1	29282583	29283082	+	0	NA	intron (NM_001166006, intron 1 of 14)	intron (NM_001166006, intron 1 of 14)	41744	NM_001166006	2035	Hs.175437	NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
1.82435	chr6	118872139	118872638	+	0	NA	intron (NM_002667, intron 1 of 1)	intron (NM_002667, intron 1 of 1)	2962	NM_002667	5350	Hs.170839	NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
1.54902-12	chr17	55114776	55115275	+	0	NA	Intergenic	AluJb|SINE|Alu	-7814	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
2.0412-12	chr2	120436490	120436989	+	0	NA	promoter-TSS (NM_001105198)	promoter-TSS (NM_001105198)	-4	NM_001105198	80775	Hs.439991	NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
0.381045-6	chr9	11933854	11934353	+	0	NA	Intergenic	Intergenic	-759283	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase related protein 1	protein-coding
0.570004-3	chr17	65821265	65821764	+	0	NA	promoter-TSS (NM_004459)	promoter-TSS (NM_004459)	-266	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
0.296531-17	chr3	15373030	15373846	+	0	NA	intron (NM_001018009, intron 1 of 8)	CpG	698	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
0.0524306-12	chr9	139920058	139920557	+	0	NA	intron (NM_212533, intron 1 of 48)	intron (NM_212533, intron 1 of 48)	-1609	NM_207511	401563	Hs.522509	NM_207511		C9orf139	-	chromosome 9 open reading frame 139	protein-coding
2.54145-9	chr1	235267478	235267977	+	0	NA	Intergenic	CpG	23525	NR_002956	677802	Hs.744743	NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
3.68556-14	chr10	104209937	104210436	+	0	NA	3' UTR (NM_024886, exon 2 of 2)	3' UTR (NM_024886, exon 2 of 2)	612	NR_038938	100505761	Hs.656457	NR_038937	ENSG00000269609	RPARP-AS1	-	RPARP antisense RNA 1	ncRNA
2.00659-15	chr12	132315707	132316206	+	0	NA	intron (NM_016155, intron 1 of 9)	intron (NM_016155, intron 1 of 9)	3018	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
3.94695-3	chr14	93799271	93799770	+	0	NA	promoter-TSS (NM_001002860)	promoter-TSS (NM_001002860)	-45	NR_144398	57578	Hs.126561	NM_020818	ENSG00000133958	UNC79	KIAA1409	unc-79 homolog (C. elegans)	protein-coding
2.30623-24	chr13	58592915	58593414	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-146797	NR_120416	101926897	Hs.640215	NR_120416	ENSG00000277448	LOC101926897	-	uncharacterized LOC101926897	ncRNA
0.798767-5	chr3	48884453	48884952	+	0	NA	promoter-TSS (NR_109997)	promoter-TSS (NR_109997)	581	NM_001321989	5576	Hs.631923	NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
4.43697-2	chr3	96951517	96952016	+	0	NA	intron (NM_001080448, intron 4 of 17)	MER50|LTR|ERV1	-206671	NM_173655	285220	Hs.272208	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
3.8934	chr17	79829715	79830214	+	0	NA	promoter-TSS (NM_001185078)	promoter-TSS (NM_001185078)	-682	NM_001301243	396	Hs.159161	NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
3.93619-11	chr16	50099640	50100139	+	0	NA	promoter-TSS (NM_182922)	promoter-TSS (NM_182922)	37	NR_138093	55027	Hs.733027	NM_017939	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
1.57391-7	chr1	226013249	226013748	+	0	NA	intron (NM_000120, intron 1 of 8)	intron (NM_000120, intron 1 of 8)	496	NM_000120	2052	Hs.89649	NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
0.700704-5	chr10	98480053	98480552	+	0	NA	promoter-TSS (NM_152309)	promoter-TSS (NM_152309)	-23	NM_152309	118788	Hs.310456	NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
8.35647	chr2	89109436	89109935	+	0	NA	Intergenic	Intergenic	-2199	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2.0621-11	chr1	236445183	236445682	+	0	NA	promoter-TSS (NM_019891)	promoter-TSS (NM_019891)	-93	NM_019891	56605	Hs.558519	NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
0.245682-8	chr17	5323162	5323661	+	0	NA	promoter-TSS (NM_001320653)	promoter-TSS (NM_001320653)	-352	NM_002532	4927	Hs.584784	NM_002532	ENSG00000108559	NUP88	-	nucleoporin 88	protein-coding
0.254883-34	chr19	32836375	32836874	+	0	NA	5' UTR (NM_014910, exon 1 of 6)	5' UTR (NM_014910, exon 1 of 6)	110	NM_001136156	22847	Hs.205392	NM_014910	ENSG00000168813	ZNF507	-	zinc finger protein 507	protein-coding
0.877779-17	chr21	40760391	40760890	+	0	NA	intron (NM_001146218, intron 1 of 4)	CpG	948	NM_001146218	7485	Hs.198308	NM_004627	ENSG00000182093	WRB	CHD5|GET1	tryptophan rich basic protein	protein-coding
1.7134-3	chr10	88433280	88433779	+	0	NA	intron (NM_001080115, intron 1 of 6)	intron (NM_001080115, intron 1 of 6)	5103	NM_001080115	11155	Hs.657271	NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
22.1396-2	chr6	23004207	23004706	+	0	NA	Intergenic	Intergenic	-286303	NR_134614	105374972	Hs.484889	NR_134613		LOC105374972	-	uncharacterized LOC105374972	ncRNA
1.38466-8	chr8	92399577	92400076	+	0	NA	intron (NM_001282356, intron 16 of 19)	intron (NM_001282356, intron 16 of 19)	138310	NM_134266	115111	Hs.354013	NM_052832	ENSG00000147606	SLC26A7	SUT2	solute carrier family 26 member 7	protein-coding
2.66001-29	chr5	851191	851690	+	0	NA	promoter-TSS (NM_024786)	promoter-TSS (NM_024786)	-339	NM_024786	79844	Hs.654874	NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
0.856568	chr3	143822907	143823406	+	0	NA	Intergenic	Intergenic	130989	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
0.0877392-39	chr7	14943095	14943594	+	0	NA	Intergenic	Intergenic	-62269	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
0.0130484-8	chr7	69029701	69030200	+	0	NA	Intergenic	Intergenic	32531	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
1.39662-15	chr8	54570982	54571481	+	0	NA	Intergenic	Intergenic	184371	NM_213620	51606	Hs.491737	NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
4.42493-7	chrX	152792285	152792784	+	0	NA	Intergenic	Intergenic	-9046	NM_001001344	492	Hs.533956	NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
29.8297	chr1	218312707	218313206	+	0	NA	Intergenic	L1M4b|LINE|L1	96109	NR_110794	101929631	Hs.407614	NR_110794	ENSG00000232100	LINC01653	-	long intergenic non-protein coding RNA 1653	ncRNA
2.06908-8	chr6	123375233	123375732	+	0	NA	intron (NM_001010852, intron 4 of 5)	intron (NM_001010852, intron 4 of 5)	58366	NM_001010852	134829	Hs.486361	NM_001010852	ENSG00000146352	CLVS2	C6orf212|C6orf213|RLBP1L2|bA160A10.4	clavesin 2	protein-coding
7.61954-10	chrX	92594492	92594991	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	333941	NM_004538	4675	Hs.21365	NM_004538	ENSG00000186310	NAP1L3	MB20|NPL3	nucleosome assembly protein 1 like 3	protein-coding
1.37272-30	chr12	44777821	44778320	+	0	NA	intron (NM_032256, intron 7 of 7)	intron (NM_032256, intron 7 of 7)	491374	NM_001145109	4753	Hs.505326	NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
1.59894-9	chr17	57578021	57578520	+	0	NA	intron (NR_110813, intron 2 of 2)	SVA_D|Other|Other	25948	NR_110813	101927728	Hs.569720	NR_110813	ENSG00000265313	LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA
0.649968-28	chr16	71929084	71929583	+	0	NA	promoter-TSS (NM_001270975)	promoter-TSS (NM_001270975)	-63	NM_014761	9798	Hs.232194	NM_014761	ENSG00000182149	IST1	OLC1	IST1, ESCRT-III associated factor	protein-coding
3.52617-4	chr7	21582405	21582904	+	0	NA	promoter-TSS (NM_001277115)	promoter-TSS (NM_001277115)	-179	NM_001277115	8701	Hs.520245	NM_001277115	ENSG00000105877	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein axonemal heavy chain 11	protein-coding
0.47692-28	chr9	101610695	101611194	+	0	NA	intron (NM_024642, intron 9 of 9)	MamRep1161|DNA|TcMar	40963	NM_024642	79695	Hs.47099	NM_024642	ENSG00000119514	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
1.33122-31	chr9	139838871	139839370	+	0	NA	promoter-TSS (NM_000606)	promoter-TSS (NM_000606)	86	NM_018998	54461	Hs.522507	NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
1.31944-13	chr20	62258480	62258979	+	0	NA	promoter-TSS (NM_012384)	promoter-TSS (NM_012384)	141	NR_132417	100505771	Hs.448392	NR_132417	ENSG00000232442	LOC100505771	-	uncharacterized LOC100505771	ncRNA
24.6344-3	chr5	7521820	7522319	+	0	NA	intron (NM_020546, intron 3 of 24)	intron (NM_020546, intron 3 of 24)	125726	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
0.141246-17	chr5	131746132	131746631	+	0	NA	promoter-TSS (NR_045116)	promoter-TSS (NR_045116)	-84	NR_045116	441108	Hs.658288	NM_001013717	ENSG00000197536	C5orf56	-	chromosome 5 open reading frame 56	ncRNA
4.32974-3	chr6	30585488	30585987	+	0	NA	promoter-TSS (NR_072994).3	promoter-TSS (NR_072994).3	251	NM_014046	28973	Hs.655329	NM_014046	ENSG00000204568	MRPS18B	C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt	mitochondrial ribosomal protein S18B	protein-coding
2.16811-14	chr18	18717011	18717510	+	0	NA	Intergenic	SVA_A|Other|Other	-25448	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
2.19683-8	chr9	99180587	99181086	+	0	NA	promoter-TSS (NM_153695)	promoter-TSS (NM_153695)	-167	NM_153695	195828	Hs.494557	NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
3.53596-14	chr17	76926146	76926645	+	0	NA	Intergenic	Intergenic	-4923	NM_003255	7077	Hs.633514	NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
1.4691-6	chr12	65219457	65219956	+	0	NA	intron (NM_015279, intron 1 of 11)	intron (NM_015279, intron 1 of 11)	1354	NM_001330186	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
3.22393	chr14	70180106	70180605	+	0	NA	3' UTR (NM_014734, exon 6 of 6)	3' UTR (NM_014734, exon 6 of 6)	-53449	NM_001320214	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
8.69666-12	chr20	25969262	25969761	+	0	NA	Intergenic	SST1|Satellite|centr	-20924	NR_004846	100134868	Hs.516956	NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
3.01899-11	chrX	132860527	132861026	+	0	NA	intron (NM_001164617, intron 3 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	258897	NM_004484	2719	Hs.644108	NM_004484	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
0.76238	chr4	1811562	1812061	+	0	NA	Intergenic	Intergenic	16772	NM_000142	2261	Hs.1420	NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
3.63512	chr12	48893494	48893993	+	0	NA	Intergenic	SVA_D|Other|Other	17457	NM_152319	121273	Hs.98202	NM_152319	ENSG00000177627	C12orf54	HSD-29|HSD-30	chromosome 12 open reading frame 54	protein-coding
3.32547-2	chr1	155196589	155197088	+	0	NA	intron (NR_002188, intron 1 of 12)	intron (NR_002188, intron 1 of 12)	487	NR_002188	2630	Hs.719930	NR_002188	ENSG00000160766	GBAP1	GBAP	glucosylceramidase beta pseudogene 1	pseudo
9.0309-4	chr3	135174982	135175481	+	0	NA	Intergenic	Intergenic	-509284	NM_002718	5523	Hs.518155	NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
0.101054-28	chr14	56662327	56662826	+	0	NA	intron (NM_021255, intron 2 of 5)	intron (NM_021255, intron 2 of 5)	77483	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
6.7162-5	chr20	36178532	36179031	+	0	NA	Intergenic	SVA_B|Other|Other	-22448	NM_001167820	10904	Hs.472651	NM_006698	ENSG00000166619	BLCAP	BC10	bladder cancer associated protein	protein-coding
5.83359-3	chr12	109034717	109035216	+	0	NA	Intergenic	Intergenic	5380	NR_039717	100616240		NR_039717	ENSG00000257221	MIR4496	-	microRNA 4496	ncRNA
0.231917-39	chr1	234260954	234261453	+	0	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-88754	NM_001300845	148641	Hs.158748	NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
13.019-2	chr14	67896473	67896972	+	0	NA	Intergenic	MIRb|SINE|MIR	11925	NR_049879	100847064		NR_049879	ENSG00000265993	MIR5694	-	microRNA 5694	ncRNA
28.5387	chr7	147283652	147284151	+	0	NA	intron (NM_014141, intron 12 of 23)	MER91A|DNA|hAT-Tip100	-84870	NR_133929	105375556	Hs.667432	NR_133929	ENSG00000230190	LOC105375556	-	uncharacterized LOC105375556	ncRNA
10.1773-2	chr13	113425704	113426203	+	0	NA	intron (NM_032189, intron 1 of 28)	LTR62|LTR|ERVL	-16908	NR_109811	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
1.13509-2	chr11	2120818	2121317	+	0	NA	Intergenic	Intergenic	34372	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
0.520764-4	chr1	145382198	145382697	+	0	NA	promoter-TSS (NR_125967)	promoter-TSS (NR_125967)	-43	NR_125967	101928979	Hs.735893	NR_125967	ENSG00000233396	LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
0.141246-26	chr5	110971010	110971509	+	0	NA	intron (NR_040093, intron 1 of 6)	intron (NR_040093, intron 1 of 6)	120689	NM_001142483	9315	Hs.36053	NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
1.99283-6	chr12	74981233	74981732	+	0	NA	Intergenic	SVA_B|Other|Other	49931	NM_001136262	552889	Hs.744849	NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
1.23205-8	chr8	134372215	134372714	+	0	NA	Intergenic	MIRb|SINE|MIR	-62917	NM_001135242	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
1.97911-11	chr8	140778225	140778724	+	0	NA	intron (NM_031466, intron 21 of 22)	MIR3|SINE|MIR	-63175	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
1.07349-8	chr11	20619623	20620122	+	0	NA	Intergenic	CpG	-1074	NM_004211	9152	Hs.136557	NM_004211	ENSG00000165970	SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 member 5	protein-coding
0.305841-6	chr18	42323944	42324443	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	63330	NM_015559	26040	Hs.435458	NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
0.496351-3	chr5	174871538	174872037	+	0	NA	promoter-TSS (NM_000794)	promoter-TSS (NM_000794)	-624	NM_000794	1812	Hs.2624	NM_000794	ENSG00000184845	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
11.1919-3	chr1	246158619	246159118	+	0	NA	intron (NM_001167740, intron 5 of 11)	MamGypLTR1d|LTR|Gypsy	421846	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
4.11168-6	chr15	90441851	90442350	+	0	NA	3' UTR (NM_001282380, exon 6 of 6)	3' UTR (NM_001282380, exon 6 of 6)	-4483	NR_037582	10239	Hs.632161	NM_005829	ENSG00000157823	AP3S2	AP3S3|sigma3b	adaptor related protein complex 3 sigma 2 subunit	protein-coding
8.60121-4	chr15	75978421	75978920	+	0	NA	intron (NM_001897, intron 3 of 9)	intron (NM_001897, intron 3 of 9)	26519	NM_001897	1464	Hs.513044	NM_001897	ENSG00000173546	CSPG4	HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
5.867-15	chr2	202035889	202036388	+	0	NA	3' UTR (NM_003879, exon 10 of 10)	3' UTR (NM_003879, exon 10 of 10)	-11466	NM_001306083	843	Hs.5353	NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	caspase 10	protein-coding
20.6651-4	chr9	122440255	122440754	+	0	NA	Intergenic	Intergenic	-256834	NR_132393	106146149	Hs.638938	NR_132393	ENSG00000261432	LINC01613	n341773	long intergenic non-protein coding RNA 1613	ncRNA
1.46302-8	chr1	67041348	67041847	+	0	NA	intron (NM_032291, intron 1 of 24)	intron (NM_032291, intron 1 of 24)	41958	NM_032291	84251	Hs.132121	NM_032291	ENSG00000118473	SGIP1	-	SH3 domain GRB2 like endophilin interacting protein 1	protein-coding
1.45087-6	chr11	35639782	35641069	+	0	NA	exon (NM_014344, exon 1 of 1)	exon (NM_014344, exon 1 of 1)	690	NM_014344	24147	Hs.39384	NM_014344	ENSG00000179431	FJX1	-	four jointed box 1	protein-coding
1.26098-31	chr1	44440260	44440759	+	0	NA	5' UTR (NM_004047, exon 1 of 8)	5' UTR (NM_004047, exon 1 of 8)	189	NM_004047	533	Hs.596514	NM_004047	ENSG00000117410	ATP6V0B	ATP6F|HATPL|VMA16	ATPase H+ transporting V0 subunit b	protein-coding
9.20819-6	chr8	128493197	128493696	+	0	NA	intron (NR_024393, intron 1 of 4)	intron (NR_024393, intron 1 of 4)	938	NR_117100	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
1.36083-5	chr7	28448626	28449125	+	0	NA	intron (NM_182899, intron 1 of 9)	CpG	-3269	NM_182898	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
1.42668-4	chr11	67571913	67572412	+	0	NA	intron (NR_024249, intron 1 of 3)	intron (NR_024249, intron 1 of 3)	645	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
14.2251	chr8	142980781	142981280	+	0	NA	Intergenic	Intergenic	98627	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
3.91474-7	chr11	133798284	133798783	+	0	NA	intron (NM_001277285, intron 12 of 19)	intron (NM_001277285, intron 12 of 19)	-26898	NR_024344	283174	Hs.504370	NM_001001873	ENSG00000280237	MIR4697HG	LINC00947	MIR4697 host gene	ncRNA
11.4086-2	chr8	80705798	80706297	+	0	NA	intron (NR_125410, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	25670	NR_125410	101927067	Hs.144030	NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
4.30626-3	chr16	57798101	57798600	+	0	NA	intron (NM_005550, intron 11 of 18)	intron (NM_005550, intron 11 of 18)	7914	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
2.63603-6	chr5	51432905	51433404	+	0	NA	Intergenic	Intergenic	-650620	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
3.71611-3	chr12	113154212	113154711	+	0	NA	intron (NM_001347952, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	-21480	NR_031631	100302227		NR_031631	ENSG00000283507	MIR1302-1	MIRN1302-1|hsa-mir-1302-1	microRNA 1302-1	ncRNA
0.0877392-20	chr7	157401225	157401724	+	0	NA	intron (NM_130843, intron 14 of 21)	intron (NM_130843, intron 14 of 21)	-34360	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
23.7469-3	chr9	115527021	115527520	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	14136	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
1.23205-5	chr2	15731658	15732157	+	0	NA	5' UTR (NM_004939, exon 1 of 26)	5' UTR (NM_004939, exon 1 of 26)	162	NM_004939	1653	Hs.440599	NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
13.0103-7	chr4	78560134	78560633	+	0	NA	Intergenic	L1MA7|LINE|L1	127476	NM_006419	10563	Hs.100431	NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
2.52588-6	chr6	41513699	41514198	+	0	NA	promoter-TSS (NR_126417)	promoter-TSS (NR_126417)	33	NR_126417	101060264	Hs.571099	NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
19.7469-4	chr1	40532907	40533406	+	0	NA	intron (NM_001330502, intron 7 of 12)	intron (NM_001330502, intron 7 of 12)	26901	NM_006367	10487	Hs.370581	NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	adenylate cyclase associated protein 1	protein-coding
0.76756-2	chr6	167764503	167765002	+	0	NA	Intergenic	CpG	26178	NM_031949	83887	Hs.520554	NM_031949	ENSG00000120440	TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase like 2	protein-coding
0.141246-8	chr7	14875516	14876015	+	0	NA	intron (NM_145695, intron 1 of 23)	MIRb|SINE|MIR	5310	NM_145695	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
0.990869-16	chr20	37522157	37522656	+	0	NA	intron (NM_001172735, intron 3 of 9)	intron (NM_001172735, intron 3 of 9)	-32549	NM_030919	81610	Hs.726442	NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
2.88193-9	chr6	99873039	99873538	+	0	NA	promoter-TSS (NR_136326)	promoter-TSS (NR_136326)	-67	NM_001322413	25957	Hs.520287	NM_015491	ENSG00000132424	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN interacting serine and arginine rich protein	protein-coding
2.21849-5	chr2	220251919	220252809	+	0	NA	promoter-TSS (NM_001319118)	promoter-TSS (NM_001319118)	-280	NM_001319118	23549	Hs.258551	NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
0.132283-12	chr2	223816810	223817309	+	0	NA	Intergenic	Intergenic	91327	NM_004457	2181	Hs.655772	NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|PRO2194	acyl-CoA synthetase long-chain family member 3	protein-coding
0.268721-20	chr3	52570239	52570738	+	0	NA	promoter-TSS (NM_001124767)	promoter-TSS (NM_001124767)	-133	NM_001124767	440957	Hs.660577	NM_001124767	ENSG00000168273	SMIM4	C3orf78	small integral membrane protein 4	protein-coding
4.65974-7	chr14	93477266	93477765	+	0	NA	intron (NM_001142593, intron 4 of 10)	intron (NM_001142593, intron 4 of 10)	-56282	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
3.19664-2	chr3	50649269	50649768	+	0	NA	promoter-TSS (NM_145071)	promoter-TSS (NM_145071)	225	NM_001243926	7867	Hs.234521	NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding
7.79892-6	chr10	131909209	131909708	+	0	NA	promoter-TSS (NR_034125)	promoter-TSS (NR_034125)	-377	NR_034125	387723	Hs.127394	NR_034125		LINC00959	-	long intergenic non-protein coding RNA 959	ncRNA
12.7246-6	chr2	217605576	217606075	+	0	NA	Intergenic	Intergenic	-45553	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
2.5649-19	chr10	112369312	112369811	+	0	NA	Intergenic	Intergenic	-34594	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
0.109954-18	chr2	238634914	238635413	+	0	NA	intron (NM_001137550, intron 7 of 23)	MIRb|SINE|MIR	34356	NM_004735	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
1.66216-5	chr1	202153751	202154250	+	0	NA	intron (NR_002930, intron 15 of 21)	intron (NR_002930, intron 15 of 21)	-9118	NM_001017403	59352	Hs.497402	NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
0.920515-15	chr7	9271264	9271763	+	0	NA	Intergenic	Intergenic	-402387	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
6.65546	chr18	43913504	43914003	+	0	NA	promoter-TSS (NR_046357)	promoter-TSS (NR_046357)	-434	NR_046357	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
0.423927-9	chr8	33329723	33330222	+	0	NA	intron (NM_032664, intron 1 of 4)	intron (NM_032664, intron 1 of 4)	692	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
1.80456-14	chr19	5790499	5790998	+	0	NA	intron (NM_020175, intron 1 of 12)	CpG	501	NM_001161619	56931	Hs.284297	NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
2.72459-3	chr10	11653485	11653984	+	0	NA	promoter-TSS (NM_014688)	promoter-TSS (NM_014688)	54	NM_014688	9712	Hs.498661	NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
15.4363-2	chr2	120577849	120578348	+	0	NA	intron (NM_002830, intron 2 of 26)	intron (NM_002830, intron 2 of 26)	60891	NM_002830	5775	Hs.469809	NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase, non-receptor type 4	protein-coding
13.9794	chr15	30684912	30685411	+	0	NA	intron (NM_148911, intron 1 of 8)	CpG	703	NM_139320	89832	Hs.510853	NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10	CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion	protein-coding
11.831-3	chr6	157982415	157982914	+	0	NA	intron (NM_153746, intron 2 of 8)	intron (NM_153746, intron 2 of 8)	32500	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
0.496351-52	chr11	3663541	3664040	+	0	NA	promoter-TSS (NR_123732)	promoter-TSS (NR_123732)	-244	NM_001079536	116969	Hs.125680	NM_053017	ENSG00000167311	ART5	ARTC5	ADP-ribosyltransferase 5	protein-coding
0.670192-14	chr17	65989069	65989568	+	0	NA	5' UTR (NM_181655, exon 2 of 3)	5' UTR (NM_181655, exon 2 of 3)	447	NM_181655	284018	Hs.90790	NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
4.42493-15	chr6	36390930	36391429	+	0	NA	intron (NM_152990, intron 3 of 4)	CpG	-19365	NM_001286579	222658	Hs.188757	NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
7.32828-3	chr8	12294091	12294590	+	0	NA	promoter-TSS (NM_001137610)	promoter-TSS (NM_001137610)	-182	NR_040091	100506990	Hs.656893	NR_040091		LOC100506990	-	uncharacterized LOC100506990	ncRNA
2.57275-3	chr2	7193551	7194050	+	0	NA	Intergenic	Intergenic	24211	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
0.861861-8	chr12	95868280	95868779	+	0	NA	intron (NM_001330246, intron 1 of 10)	intron (NM_001330246, intron 1 of 10)	707	NM_001330246	10988	Hs.444986	NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
1.93142-2	chr22	18256501	18257000	+	0	NA	promoter-TSS (NM_001244572)	promoter-TSS (NM_001244572)	58	NM_001244572	637	Hs.517145	NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
0.861861-12	chr12	82987751	82988250	+	0	NA	Intergenic	Intergenic	-92934	NM_001320322	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
1.82435-11	chr1	167105385	167105884	+	0	NA	Intergenic	Intergenic	42307	NM_001080426	92235	Hs.632462	NM_001080426	ENSG00000198842	DUSP27	-	dual specificity phosphatase 27 (putative)	protein-coding
4.92144-2	chr16	67995515	67996014	+	0	NA	intron (NM_001145962, intron 1 of 22)	intron (NM_001145962, intron 1 of 22)	2204	NM_001145963	6560	Hs.10094	NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
0.639892-11	chr9	112083130	112083629	+	0	NA	promoter-TSS (NM_019114)	promoter-TSS (NM_019114)	-135	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
3.96856-6	chr18	24561312	24561811	+	0	NA	intron (NM_031422, intron 4 of 5)	intron (NM_031422, intron 4 of 5)	-115753	NM_001317387	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	MIWC|WCH4	aquaporin 4	protein-coding
38.1248	chr13	102567532	102568031	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	1214	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
10.2687-2	chr13	22246990	22247489	+	0	NA	intron (NM_002010, intron 1 of 2)	intron (NM_002010, intron 1 of 2)	2024	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
8.76148-18	chr22	22202273	22202772	+	0	NA	intron (NM_002745, intron 1 of 8)	SVA_B|Other|Other	19448	NM_138957	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
6.32644-7	chr5	122145648	122146147	+	0	NA	intron (NM_001278199, intron 7 of 14)	SVA_E|Other|Other	35206	NM_001278199	6643	Hs.125352	NM_003100	ENSG00000205302	SNX2	TRG-9	sorting nexin 2	protein-coding
2.43364-5	chr20	61787448	61787947	+	0	NA	Intergenic	Intergenic	-22155	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
8.79426-11	chr6	45629466	45629965	+	0	NA	Intergenic	Intergenic	239401	NM_001278478	860	Hs.535845	NM_004348	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt related transcription factor 2	protein-coding
1.69411-12	chr15	26296846	26297345	+	0	NA	intron (NR_040082, intron 3 of 4)	MIR|SINE|MIR	-63865	NR_038852	503519	Hs.371380	NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
0.990869-19	chr18	14854909	14855408	+	0	NA	Intergenic	SVA_A|Other|Other	24993	NR_036153	100422907		NR_036153	ENSG00000265499	MIR3156-2	-	microRNA 3156-2	ncRNA
0.634863-15	chr1	7764471	7764970	+	0	NA	intron (NM_015215, intron 11 of 22)	CpG	-66609	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
1.72631-14	chr7	100887502	100888001	+	0	NA	intron (NM_016068, intron 1 of 4)	intron (NM_016068, intron 1 of 4)	620	NM_016068	51024	Hs.423968	NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
2.13249-9	chr6	34359404	34359903	+	0	NA	intron (NM_001202470, intron 5 of 8)	CpG	804	NM_006703	11165	Hs.188882	NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
0.268721-43	chr20	44563647	44564146	+	0	NA	intron (NM_022104, intron 1 of 16)	CpG	579	NM_022104	63935	Hs.472856	NM_022104	ENSG00000100982	PCIF1	C20orf67|PPP1R121	PDX1 C-terminal inhibiting factor 1	protein-coding
2.29148-9	chr12	104234670	104235169	+	0	NA	promoter-TSS (NM_001031701)	promoter-TSS (NM_001031701)	56	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
1.78486-2	chr5	6726562	6727061	+	0	NA	intron (NM_006999, intron 1 of 12)	intron (NM_006999, intron 1 of 12)	12093	NM_006999	11044	Hs.481542	NM_006999	ENSG00000112941	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	poly(A) RNA polymerase D7, non-canonical	protein-coding
8.86057-4	chr13	75932026	75932525	+	0	NA	intron (NM_014832, intron 3 of 20)	intron (NM_014832, intron 3 of 20)	117551	NR_132375	106144536	Hs.591226	NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
1.40862-12	chr19	42579645	42580144	+	0	NA	promoter-TSS (NM_022752)	promoter-TSS (NM_022752)	-396	NM_022752	64763	Hs.13323	NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
0.496351	chr6	73329845	73330344	+	0	NA	Intergenic	Intergenic	-1477	NM_001160130	56479	Hs.445324	NM_019842	ENSG00000185760	KCNQ5	Kv7.5	potassium voltage-gated channel subfamily Q member 5	protein-coding
9.1364-19	chr9	137278830	137279329	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	7822	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
11.9044-8	chr2	171702812	171703311	+	0	NA	intron (NM_000817, intron 10 of 16)	intron (NM_000817, intron 10 of 16)	29861	NM_013445	2571	Hs.420036	NM_000817	ENSG00000128683	GAD1	CPSQ1|GAD|SCP	glutamate decarboxylase 1	protein-coding
3.49692-10	chr7	5324496	5324995	+	0	NA	intron (NM_153247, intron 1 of 10)	intron (NM_153247, intron 1 of 10)	2184	NM_001040661	222962	Hs.4302	NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
2.93282-15	chr11	113746170	113746669	+	0	NA	promoter-TSS (NM_001346263)	promoter-TSS (NM_001346263)	-127	NM_001346270	57646	Hs.503891	NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
1.37869-30	chr2	26836606	26837105	+	0	NA	intron (NM_001029881, intron 3 of 6)	intron (NM_001029881, intron 3 of 6)	27381	NM_001029881	130106	Hs.591579	NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
1.92465-21	chr3	119963016	119963515	+	0	NA	promoter-TSS (NM_001168271)	promoter-TSS (NM_001168271)	-123	NM_153002	165829	Hs.333358	NM_153002	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
2.96709-15	chr13	98868420	98868919	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	7891	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
0.680339-25	chr20	33227532	33228031	+	0	NA	intron (NM_080476, intron 4 of 11)	intron (NM_080476, intron 4 of 11)	37308	NM_080476	128869	Hs.253319	NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
1.22629-16	chr9	34279462	34279961	+	0	NA	intron (NM_194313, intron 6 of 12)	intron (NM_194313, intron 6 of 12)	49487	NM_194313	347240	Hs.710246	NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
1.0902	chr12	47473587	47474086	+	0	NA	promoter-TSS (NM_001143668)	promoter-TSS (NM_001143668)	-102	NM_001143668	347902	Hs.121520	NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
0.867161-3	chr2	177042671	177043170	+	0	NA	promoter-TSS (NR_110464)	promoter-TSS (NR_110464)	26	NR_110457	102800310	Hs.599655	NR_110457		HAGLROS	-	HAGLR opposite strand (non-protein coding)	ncRNA
1.95861-5	chr17	16329054	16329553	+	0	NA	intron (NM_016113, intron 5 of 14)	intron (NM_016113, intron 5 of 14)	10447	NM_016113	51393	Hs.279746	NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
0.00434512-20	chr16	27246555	27247054	+	0	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	31508	NM_001145348	79831	Hs.145717	NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
19.3181-4	chr6	170063521	170064020	+	0	NA	intron (NM_182552, intron 8 of 25)	intron (NM_182552, intron 8 of 25)	38389	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
0.467237-24	chr17	38646590	38647089	+	0	NA	intron (NM_032865, intron 2 of 12)	intron (NM_032865, intron 2 of 12)	11015	NM_032865	84951	Hs.438292	NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
0.594835-8	chrX	129254675	129255174	+	0	NA	Intergenic	CpG	-10236	NM_001127197	2000	Hs.271940	NM_001421	ENSG00000102034	ELF4	ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
17.2584	chr8	133192580	133193079	+	0	NA	intron (NM_001204824, intron 3 of 14)	intron (NM_001204824, intron 3 of 14)	-75317	NM_001145095	10086	Hs.285026	NM_005712	ENSG00000132297	HHLA1	PLA2L	HERV-H LTR-associating 1	protein-coding
2.47184-21	chr9	114244129	114244628	+	0	NA	intron (NM_001080398, intron 3 of 50)	L1MB3|LINE|L1	2647	NM_001080398	23392	Hs.368255	NM_001080398	ENSG00000136813	KIAA0368	ECM29	KIAA0368	protein-coding
1.14074-7	chr16	67225776	67226275	+	0	NA	promoter-TSS (NM_001950)	promoter-TSS (NM_001950)	-43	NM_001950	1874	Hs.108371	NM_001950	ENSG00000205250	E2F4	E2F-4	E2F transcription factor 4	protein-coding
2.82329-27	chr12	122110307	122110806	+	0	NA	Intergenic	Intergenic	-2996	NM_173855	283385	Hs.434154	NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
3.85103-20	chr6	86388747	86389246	+	0	NA	promoter-TSS (NR_003038)	promoter-TSS (NR_003038)	-545	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5	ncRNA
1.02373-4	chr12	110561703	110562202	+	0	NA	promoter-TSS (NM_031473)	promoter-TSS (NM_031473)	-188	NM_001347948	28981	Hs.528382	NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1	intraflagellar transport 81	protein-coding
2.652-6	chr2	73441122	73441621	+	0	NA	promoter-TSS (NM_006062)	promoter-TSS (NM_006062)	5	NM_006062	10322	Hs.631882	NM_006062	ENSG00000135632	SMYD5	NN8-4AG|RAI15|RRG1|ZMYND23	SMYD family member 5	protein-coding
5.01689-9	chr2	139537560	139538059	+	0	NA	promoter-TSS (NM_007226)	promoter-TSS (NM_007226)	2	NM_007226	11249	Hs.435019	NM_007226	ENSG00000144227	NXPH2	NPH2	neurexophilin 2	protein-coding
1.56767-12	chr2	157257315	157257814	+	0	NA	Intergenic	Intergenic	-34401	NM_001083112	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
0.996329-29	chr13	111805122	111805621	+	0	NA	promoter-TSS (NM_001320851)	promoter-TSS (NM_001320851)	553	NR_120398	101060553	Hs.662213	NR_120398		LOC101060553	-	uncharacterized LOC101060553	ncRNA
0.0305075-26	chr22	22292366	22292865	+	0	NA	intron (NM_014634, intron 3 of 7)	CpG	14635	NM_014634	9647	Hs.112728	NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
14.8812	chr8	126969907	126970406	+	0	NA	Intergenic	L2|LINE|L2	-6715	NR_038446	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
2.27678-11	chr7	92861322	92861821	+	0	NA	promoter-TSS (NM_024553)	promoter-TSS (NM_024553)	-60	NM_001346642	253012	Hs.443169	NM_198151	ENSG00000188175	HEPACAM2	MIKI	HEPACAM family member 2	protein-coding
3.28827-6	chr10	104001237	104001736	+	0	NA	promoter-TSS (NM_005029)	promoter-TSS (NM_005029)	-255	NM_005029	5309	Hs.137568	NM_005029	ENSG00000107859	PITX3	ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
0.540393-5	chr19	46009666	46010165	+	0	NA	promoter-TSS (NM_003370)	promoter-TSS (NM_003370)	-773	NM_003370	7408	Hs.515469	NM_003370	ENSG00000125753	VASP	-	vasodilator-stimulated phosphoprotein	protein-coding
3.87216-9	chr9	841765	842264	+	0	NA	exon (NM_021951, exon 1 of 5)	exon (NM_021951, exon 1 of 5)	324	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
8.26814-2	chr12	114677710	114678209	+	0	NA	Intergenic	Intergenic	166009	NM_181486	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
0.433514-2	chr5	176249573	176250072	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	12262	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
12.6761-5	chr1	33937847	33938346	+	0	NA	promoter-TSS (NM_145238)	promoter-TSS (NM_145238)	-136	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
8.18156-5	chr4	6592968	6593467	+	0	NA	intron (NM_001292038, intron 5 of 18)	LTR53|LTR|ERVL	16316	NM_001292038	23324	Hs.188464	NM_015274	ENSG00000013288	MAN2B2	-	mannosidase alpha class 2B member 2	protein-coding
1.02923-2	chr1	23077569	23078068	+	0	NA	intron (NM_017449, intron 1 of 15)	intron (NM_017449, intron 1 of 15)	31808	NR_039832	100616391		NR_039832	ENSG00000265422	MIR4684	-	microRNA 4684	ncRNA
0.788339-7	chr6	62859851	62860350	+	0	NA	intron (NM_152688, intron 2 of 8)	intron (NM_152688, intron 2 of 8)	136032	NM_152688	202559	Hs.519794	NM_152688	ENSG00000112232	KHDRBS2	SLM-1|SLM1	KH RNA binding domain containing, signal transduction associated 2	protein-coding
1.37869-14	chrX	46404960	46405459	+	0	NA	promoter-TSS (NM_001190417)	promoter-TSS (NM_001190417)	284	NR_015378	401588	Hs.729370	NR_015378	ENSG00000230844	ZNF674-AS1	-	ZNF674 antisense RNA 1 (head to head)	ncRNA
1.50581-32	chr12	50222217	50222716	+	0	NA	promoter-TSS (NM_001037806)	promoter-TSS (NM_001037806)	140	NR_027501	100286844	Hs.656019	NR_027499	ENSG00000258057	BCDIN3D-AS1	-	BCDIN3D antisense RNA 1	ncRNA
0.409586-10	chr15	91438844	91439343	+	0	NA	TTS (NM_002005)	TTS (NM_002005)	-6355	NM_001320977	4122	Hs.116459	NM_006122	ENSG00000196547	MAN2A2	MANA2X	mannosidase alpha class 2A member 2	protein-coding
0.649968-13	chr6	88487430	88487929	+	0	NA	Intergenic	Intergenic	-6899	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
2.54925-2	chr11	71814188	71814687	+	0	NA	promoter-TSS (NM_017907)	promoter-TSS (NM_017907)	-4	NM_017907	55004	Hs.731528	NM_017907	ENSG00000149357	LAMTOR1	C11orf59|PDRO|Ragulator1|p18|p27RF-Rho	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding
21.1351-2	chr14	87619001	87619500	+	0	NA	Intergenic	Intergenic	247128	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
21.2321-2	chr16	49708188	49708687	+	0	NA	intron (NM_001271620, intron 3 of 7)	MIR|SINE|MIR	-10295	NM_001330533	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
5.39102-10	chr13	108490960	108491459	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-3403	NR_046848	100874375	Hs.653972	NR_046848		FAM155A-IT1	-	FAM155A intronic transcript 1	ncRNA
4.86782-16	chr5	6202694	6203193	+	0	NA	Intergenic	Intergenic	134462	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
0.0305075-52	chr1	209628881	209629380	+	0	NA	Intergenic	Intergenic	23652	NR_029622	406988		NR_029622	ENSG00000230937	MIR205	MIRN205|mir-205	microRNA 205	ncRNA
0.700704-4	chr2	73200674	73201173	+	0	NA	intron (NM_001330411, intron 11 of 14)	intron (NM_001330411, intron 11 of 14)	56319	NM_004097	2016	Hs.516090	NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
2.05512-9	chr2	20813455	20813954	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-21396	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
1.25518-4	chr4	141071993	141072492	+	0	NA	intron (NM_018717, intron 1 of 5)	CpG	2991	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
1.79799-15	chr4	154075072	154075571	+	0	NA	intron (NM_001130067, intron 1 of 11)	intron (NM_001130067, intron 1 of 11)	1051	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
0.861861-7	chrX	55187194	55187693	+	0	NA	promoter-TSS (NM_001166703)	promoter-TSS (NM_001166703)	92	NM_001166703	90736	Hs.415414	NM_138362	ENSG00000182518	FAM104B	CXorf44	family with sequence similarity 104 member B	protein-coding
12.7491	chr8	135730948	135731447	+	0	NA	Intergenic	L1MC|LINE|L1	-5905	NR_110323	57623	Hs.446172	NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
8.06875-10	chr15	52751309	52751808	+	0	NA	intron (NM_000259, intron 1 of 40)	SVA_B|Other|Other	69689	NM_001142495	4644	Hs.21213	NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
19.0658-2	chr4	159509852	159510351	+	0	NA	intron (NR_045580, intron 2 of 17)	THE1C|LTR|ERVL-MaLR	67235	NM_001253732	59350	Hs.591686	NM_021634	ENSG00000171509	RXFP1	LGR7|RXFPR1	relaxin/insulin like family peptide receptor 1	protein-coding
2.79014-5	chr6	167771448	167772328	+	0	NA	Intergenic	Intergenic	26110	NM_004610	6953	Hs.351	NM_004610	ENSG00000203690	TCP10	TCP10A	t-complex 10	protein-coding
18.9279-7	chr6	119359096	119359595	+	0	NA	intron (NM_001100411, intron 1 of 16)	HAL1|LINE|L1	30963	NR_030315	693128		NR_030315	ENSG00000207982	MIR548B	MIRN548B	microRNA 548b	ncRNA
9.1364	chr2	208632516	208633015	+	0	NA	exon (NM_003468, exon 2 of 2)	exon (NM_003468, exon 2 of 2)	1378	NM_003468	7855	Hs.17631	NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5	frizzled class receptor 5	protein-coding
0.731433-15	chr19	2783174	2783673	+	0	NA	promoter-TSS (NM_003021)	promoter-TSS (NM_003021)	-69	NM_003021	6449	Hs.203910	NM_003021	ENSG00000104969	SGTA	SGT|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat containing alpha	protein-coding
0.400052-49	chr13	50977388	50977887	+	0	NA	intron (NR_109974, intron 3 of 6)	intron (NR_109974, intron 3 of 6)	123948	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
14.7625-7	chr4	48044975	48045474	+	0	NA	Intergenic	Intergenic	26435	NM_207330	152519	Hs.134190	NM_207330	ENSG00000163293	NIPAL1	NPAL1	NIPA like domain containing 1	protein-coding
2.66001-8	chr18	40646525	40647024	+	0	NA	intron (NM_001272077, intron 1 of 5)	L2c|LINE|L2	48883	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding
55.6864	chr18	21578683	21579182	+	0	NA	intron (NR_110796, intron 5 of 5)	intron (NR_110796, intron 5 of 5)	6195	NM_153211	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
6.81937-17	chr2	208179696	208180195	+	0	NA	Intergenic	Intergenic	-45797	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
0.127808-34	chr6	160113587	160114086	+	0	NA	exon (NM_000636, exon 2 of 5)	exon (NM_000636, exon 2 of 5)	524	NM_001024466	6648	Hs.487046	NM_000636	ENSG00000112096	SOD2	IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2, mitochondrial	protein-coding
4.37707-14	chr2	183989281	183989780	+	0	NA	intron (NR_109856, intron 1 of 7)	intron (NR_109856, intron 1 of 7)	447	NR_109856	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
2.13249-7	chr11	17413053	17413552	+	0	NA	Intergenic	Intergenic	-2424	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
15.9688-5	chr5	14251408	14251907	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	107846	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
46.3827-3	chr6	88589149	88589648	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	94820	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
0.268721-57	chr11	12221737	12222236	+	0	NA	intron (NR_144420, intron 3 of 27)	intron (NR_144420, intron 3 of 27)	36756	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
15.0446-3	chr14	51672249	51672748	+	0	NA	Intergenic	Intergenic	-34388	NM_030755	81542	Hs.125221	NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
9.20819-4	chr11	126081348	126081847	+	0	NA	promoter-TSS (NM_001144827)	promoter-TSS (NM_001144827)	-10	NM_032795	84881	Hs.150458	NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
20.0922	chr2	139621121	139621620	+	0	NA	Intergenic	7SK|RNA|RNA	-33524	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
0.0261362-30	chr6	27720835	27721334	+	0	NA	Intergenic	Intergenic	-8439	NR_038929	100131289	Hs.200573	NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
0.846002-5	chr11	59569862	59570361	+	0	NA	3' UTR (NM_001178040, exon 10 of 10)	3' UTR (NM_001178040, exon 10 of 10)	8234	NM_017840	54948	Hs.530734	NM_017840	ENSG00000166902	MRPL16	L16mt|MRP-L16|PNAS-111	mitochondrial ribosomal protein L16	protein-coding
1.50581-11	chr8	144552585	144553084	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	-40232	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
4.24812-15	chr2	134348693	134349192	+	0	NA	Intergenic	Intergenic	-22911	NM_207363	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK associated protein 5	protein-coding
1.39063-16	chr13	108629432	108629931	+	0	NA	Intergenic	Intergenic	-110221	NM_001080396	728215	Hs.535394	NM_001080396	ENSG00000204442	FAM155A	-	family with sequence similarity 155 member A	protein-coding
0.423927-14	chr14	96064099	96064598	+	0	NA	Intergenic	Intergenic	-53167	NR_028288	27004	Hs.510368	NM_012468	ENSG00000187621	TCL6	TNG1|TNG2	T-cell leukemia/lymphoma 6 (non-protein coding)	ncRNA
8.38632-8	chr9	136686912	136687411	+	0	NA	intron (NM_001134398, intron 4 of 29)	intron (NM_001134398, intron 4 of 29)	-82084	NM_007101	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
2.98432-20	chrX	113233795	113234294	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-52538	NR_131204	105463123	Hs.550218	NR_131204	ENSG00000241743	XACT	-	X active specific transcript (non-protein coding)	ncRNA
0.8302-9	chr1	202123884	202124383	+	0	NA	intron (NR_037663, intron 5 of 9)	intron (NR_037663, intron 5 of 9)	4986	NM_080588	5778	Hs.402773	NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase, non-receptor type 7	protein-coding
1.79799-8	chr8	50808046	50808545	+	0	NA	Intergenic	Intergenic	-13991	NM_001287813	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
1.02923-9	chrX	154687274	154687773	+	0	NA	TTS (NR_036260).2	TTS (NR_036260).2	345	NR_036260	100422977		NR_036260	ENSG00000221603	MIR1184-3	-	microRNA 1184-3	ncRNA
0.0305075-78	chr4	21950327	21950826	+	0	NA	promoter-TSS (NM_147182)	promoter-TSS (NM_147182)	-202	NM_147182	80333	Hs.655705	NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
2.46417-3	chr9	139760573	139761072	+	0	NA	promoter-TSS (NM_153200)	promoter-TSS (NM_153200)	-34	NM_153200	8721	Hs.174050	NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
0.496351-22	chr16	48278095	48278594	+	0	NA	exon (NM_001300948, exon 1 of 14)	exon (NM_001300948, exon 1 of 14)	266	NM_031490	83752	Hs.295923	NM_031490	ENSG00000102910	LONP2	LONP|LONPL|PLON|PSLON	lon peptidase 2, peroxisomal	protein-coding
15.0446-4	chr6	19857844	19858343	+	0	NA	Intergenic	Intergenic	20492	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding
0.268721-40	chr5	28084182	28084681	+	0	NA	Intergenic	MER52A|LTR|ERV1	203341	NR_134265	105374698	Hs.124461	NR_134265	ENSG00000249785	LINC02103	-	long intergenic non-protein coding RNA 2103	ncRNA
2.41088	chr2	43444868	43445367	+	0	NA	Intergenic	Intergenic	8628	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
21.296	chrX	68064278	68064777	+	0	NA	Intergenic	Intergenic	15687	NM_004429	1947	Hs.144700	NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
7.39929-3	chr5	147141880	147142379	+	0	NA	intron (NM_001270941, intron 1 of 21)	MLT1B|LTR|ERVL-MaLR	20282	NM_001282282	9832	Hs.740461	NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
0.357404-6	chr19	770203	770702	+	0	NA	Intergenic	Intergenic	19339	NR_135168	126353	Hs.439180	NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
1.4813	chr12	104323003	104323502	+	0	NA	promoter-TSS (NR_037425)	promoter-TSS (NR_037425)	737	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
0.00434512-17	chr14	36843146	36843645	+	0	NA	Intergenic	Intergenic	-53513	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
0.101054-13	chr21	30257357	30257856	+	0	NA	promoter-TSS (NR_047510)	promoter-TSS (NR_047510)	89	NM_182749	29104	Hs.163846	NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
0.0833099-32	chr20	2821109	2821608	+	0	NA	promoter-TSS (NM_080413)	promoter-TSS (NM_080413)	-10	NM_022760	64773	Hs.29341	NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
1.17475-13	chr19	37263507	37264006	+	0	NA	promoter-TSS (NM_001193552)	promoter-TSS (NM_001193552)	-40	NM_001267779	342892	Hs.406307	NM_001193552	ENSG00000267041	ZNF850	ZNF850P	zinc finger protein 850	protein-coding
27.3283	chr6	19587695	19588194	+	0	NA	Intergenic	Intergenic	137892	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
7.85156-9	chr2	190518753	190519252	+	0	NA	Intergenic	SVA_B|Other|Other	-7123	NM_019048	54529	Hs.101364	NM_019048	ENSG00000138381	ASNSD1	NBLA00058|NS3TP1	asparagine synthetase domain containing 1	protein-coding
1.37272-22	chr5	55646295	55646794	+	0	NA	Intergenic	Intergenic	-117358	NM_024669	79722	Hs.436214	NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
10.0656-2	chr5	19886599	19887098	+	0	NA	promoter-TSS (NM_001291957)	promoter-TSS (NM_001291957)	-467	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
5.37602-7	chr13	44359667	44360166	+	0	NA	non-coding (NR_145132, exon 2 of 2)	non-coding (NR_145132, exon 2 of 2)	1200	NM_001347967	55068	Hs.128258	NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
2.66001-25	chr7	156737480	156737979	+	0	NA	Intergenic	Intergenic	-4688	NM_138400	64434	Hs.15825	NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
0.101054-11	chr22	41763092	41763591	+	0	NA	promoter-TSS (NM_001145398)	promoter-TSS (NM_001145398)	4	NM_001145398	7008	Hs.181159	NM_003216	ENSG00000167074	TEF	-	TEF, PAR bZIP transcription factor	protein-coding
4.14539-14	chr5	11785867	11786366	+	0	NA	intron (NR_109988, intron 1 of 21)	intron (NR_109988, intron 1 of 21)	118039	NR_109988	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
0.209071-5	chr5	26941754	26942253	+	0	NA	intron (NM_016279, intron 2 of 11)	MSTC|LTR|ERVL-MaLR	96686	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
4.57175-8	chr7	76026577	76027076	+	0	NA	promoter-TSS (NM_007155)	promoter-TSS (NM_007155)	-15	NM_007155	7784	Hs.656137	NM_007155	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
7.09965-3	chrX	144802785	144803284	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-96313	NM_032539	84631	Hs.320368	NM_032539	ENSG00000185985	SLITRK2	CXorf2|SLITL1	SLIT and NTRK like family member 2	protein-coding
0.118872-46	chrX	52925768	52926267	+	0	NA	promoter-TSS (NM_001321179)	promoter-TSS (NM_001321179)	50	NM_001321183	727866	Hs.6451	NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
18.3863-2	chr7	34767051	34767550	+	0	NA	intron (NR_015356, intron 3 of 4)	intron (NR_015356, intron 3 of 4)	30584	NR_033664	404744	Hs.487951	NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
2.74088-4	chr7	100450015	100450514	+	0	NA	promoter-TSS (NM_001267814)	promoter-TSS (NM_001267814)	-77	NM_020246	56996	Hs.521087	NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
0.310503-22	chr5	1799365	1800233	+	0	NA	intron (NM_032479, intron 1 of 1)	CpG	157	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
0.0744648-8	chr3	57048978	57049477	+	0	NA	intron (NM_001128615, intron 2 of 12)	MER58A|DNA|hAT-Charlie	-45242	NM_181727	353324	Hs.129794	NM_181727	ENSG00000186451	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
0.736576-11	chr7	148093003	148093502	+	0	NA	intron (NM_014141, intron 22 of 23)	intron (NM_014141, intron 22 of 23)	-194405	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
0.675262-16	chr4	2060671	2061170	+	0	NA	promoter-TSS (NM_178557)	promoter-TSS (NM_178557)	-319	NM_178557	339983	Hs.318529	NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
0.241089-7	chr8	26323704	26324203	+	0	NA	Intergenic	Intergenic	47530	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
13.9469	chr11	114298476	114298975	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-11383	NM_015523	25996	Hs.677190	NM_015523	ENSG00000076043	REXO2	CGI-114|REX2|RFN|SFN	RNA exonuclease 2	protein-coding
17.2125-2	chr4	77671382	77671881	+	0	NA	intron (NM_020859, intron 6 of 10)	L1PA15|LINE|L1	147371	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
1.9044-16	chr2	220374728	220375227	+	0	NA	Intergenic	Intergenic	-3915	NM_018674	55515	Hs.87469	NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
0.414361-31	chr8	54404838	54405337	+	0	NA	Intergenic	MER74A|LTR|ERVL	-240830	NM_001318497	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
27.3283-2	chr9	137462046	137462545	+	0	NA	Intergenic	Intergenic	-71356	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	EDSC	collagen type V alpha 1 chain	protein-coding
0.809219-6	chr2	125207898	125208397	+	0	NA	intron (NM_130773, intron 6 of 23)	(A)n|Simple_repeat|Simple_repeat	425283	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
1.62412-7	chr14	23369135	23369634	+	0	NA	TTS (NM_018107)	TTS (NM_018107)	16952	NM_173527	161253	Hs.444911	NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
11.7457-5	chr22	47526717	47527216	+	0	NA	intron (NR_104292, intron 13 of 13)	intron (NR_104292, intron 13 of 13)	-214355	NR_144462	339685	Hs.434351	NR_038922		LOC339685	-	uncharacterized LOC339685	ncRNA
25.4516	chr1	7427194	7427693	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-403886	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
5.52842-2	chr3	135806872	135807371	+	0	NA	intron (NM_001190447, intron 8 of 12)	L1PA16|LINE|L1	65544	NM_181897	5523	Hs.518155	NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
8.76148-19	chr4	166215973	166216472	+	0	NA	intron (NM_001331024, intron 5 of 13)	intron (NM_001331024, intron 5 of 13)	-15047	NR_026575	2713	Hs.654557	NR_026575	ENSG00000229894	GK3P	GKP3|GKTB	glycerol kinase 3 pseudogene	pseudo
3.76751-4	chr5	117442865	117443364	+	0	NA	intron (NR_104997, intron 2 of 2)	THE1D|LTR|ERVL-MaLR	-175155	NR_104609	100505811	Hs.369776	NR_104609	ENSG00000250427	LINC02148	HNCAT21	long intergenic non-protein coding RNA 2148	ncRNA
5.05845-15	chr18	35025301	35025800	+	0	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	20917	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
1.04577-6	chr4	56212236	56212735	+	0	NA	promoter-TSS (NM_024592)	promoter-TSS (NM_024592)	97	NM_024592	79644	Hs.39311	NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
0.15923-11	chr3	183415487	183415986	+	0	NA	5' UTR (NM_018023, exon 1 of 31)	5' UTR (NM_018023, exon 1 of 31)	130	NM_018023	55689	Hs.632575	NM_018023	ENSG00000163872	YEATS2	-	YEATS domain containing 2	protein-coding
1.79799-12	chr3	122134755	122135254	+	0	NA	promoter-TSS (NM_019069)	promoter-TSS (NM_019069)	-49	NR_125405	102723582	Hs.675056	NR_125405	ENSG00000272758	LOC102723582	-	uncharacterized LOC102723582	ncRNA
2.47952-8	chr20	52471239	52471738	+	0	NA	Intergenic	SVA_D|Other|Other	20760	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
3.5164-10	chr7	47626494	47626993	+	0	NA	Intergenic	Intergenic	-5001	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
0.400052-7	chr4	1759943	1760442	+	0	NA	Intergenic	Intergenic	-34847	NM_001163213	2261	Hs.1420	NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
26.4975-3	chr11	85894622	85895121	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-60555	NM_001330334	8726	Hs.503510	NM_003797	ENSG00000074266	EED	HEED|WAIT1	embryonic ectoderm development	protein-coding
0.0392635-40	chr2	11294787	11295286	+	0	NA	promoter-TSS (NM_001282710)	promoter-TSS (NM_001282710)	-462	NM_001282711	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
2.26214-16	chr10	71210956	71211455	+	0	NA	promoter-TSS (NM_012339)	promoter-TSS (NM_012339)	-21	NM_012339	23555	Hs.499941	NM_012339	ENSG00000099282	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
2.13249-17	chr6	158652964	158653463	+	0	NA	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	63834	NM_207118	404672	Hs.356224	NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
0.428718-37	chr1	247650343	247650842	+	0	NA	Intergenic	Intergenic	-3778	NM_001004698	441932	Hs.591526	NM_001004698		OR2W5	OR2W5P|OST722	olfactory receptor family 2 subfamily W member 5 (gene/pseudogene)	protein-coding
5.65431-5	chr22	31686505	31687004	+	0	NA	intron (NM_001135911, intron 3 of 4)	CpG	1766	NM_001135911	113791	Hs.26670	NM_052880	ENSG00000100100	PIK3IP1	HGFL|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
2.47184-19	chr1	40040223	40040722	+	0	NA	intron (NM_003819, intron 1 of 15)	intron (NM_003819, intron 1 of 15)	2049	NM_001135653	8761	Hs.169900	NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
26.073-2	chrUn_gl000247	3626	4125	+	0	NA	NA	L1PA7|LINE|L1	NA	NA								
0.177288-13	chr3	138634682	138635181	+	0	NA	Intergenic	CpG	27931	NR_121649	103344930	Hs.195033	NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
8.15309-5	chr3	171727519	171728018	+	0	NA	Intergenic	L2a|LINE|L2	-29650	NM_022763	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
2.64401-9	chr20	12916619	12917118	+	0	NA	intron (NR_109872, intron 1 of 1)	intron (NR_109872, intron 1 of 1)	743	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
16.3827-4	chr16	88877604	88878103	+	0	NA	intron (NM_001030018, intron 2 of 4)	CpG	489	NM_000485	353	Hs.28914	NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
8.01343-3	chr1	185744607	185745106	+	0	NA	intron (NM_031935, intron 1 of 106)	intron (NM_031935, intron 1 of 106)	41173	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
0.32452-19	chr5	139031410	139031909	+	0	NA	intron (NM_001317205, intron 1 of 2)	intron (NM_001317205, intron 1 of 2)	1085	NM_001317205	51523	Hs.189119	NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
2.48721-15	chr3	160118934	160119433	+	0	NA	intron (NM_001288753, intron 2 of 23)	intron (NM_001288753, intron 2 of 23)	836	NM_005496	10051	Hs.58992	NM_005496	ENSG00000113810	SMC4	CAP-C|CAPC|SMC-4|SMC4L1	structural maintenance of chromosomes 4	protein-coding
5.0724	chr2	97439674	97440173	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	13284	NM_020184	26504	Hs.175043	NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
2.18963-12	chr14	32551832	32552331	+	0	NA	intron (NM_001173, intron 1 of 6)	intron (NM_001173, intron 1 of 6)	5586	NM_001030055	394	Hs.592313	NM_001173	ENSG00000100852	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
1.73277-7	chr13	110064820	110065319	+	0	NA	Intergenic	Intergenic	12026	NR_126361	104326054	Hs.569298	NR_126361	ENSG00000229792	LINC00399	TCONS_00021596	long intergenic non-protein coding RNA 399	ncRNA
0.132283-30	chr6	127440774	127441273	+	0	NA	intron (NM_032784, intron 1 of 4)	CpG	975	NM_032784	84870	Hs.135254	NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
5.39102	chr15	64745425	64745924	+	0	NA	intron (NM_016213, intron 12 of 12)	L2a|LINE|L2	-45945	NM_015042	23060	Hs.595451	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
16.2342	chr19	20292960	20293459	+	0	NA	intron (NM_052852, intron 1 of 3)	intron (NM_052852, intron 1 of 3)	15186	NM_052852	90649	Hs.590991	NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
5.12862	chr3	43810476	43810975	+	0	NA	Intergenic	Intergenic	-77639	NM_001346469	55129	Hs.656657	NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
2.652-3	chr1	226910888	226911387	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	15739	NM_002221	3707	Hs.528087	NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
8.76148-20	chrX	10532418	10532917	+	0	NA	intron (NM_001193280, intron 1 of 5)	intron (NM_001193280, intron 1 of 5)	2976	NM_001193279	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
0.186345-5	chr7	142024180	142024679	+	0	NA	Intergenic	Intergenic	-52361	NR_036483	207147	Hs.604069	NR_036483	ENSG00000186163	TRY2P	-	trypsinogen-like pseudogene	pseudo
12.233	chr10	47959435	47959934	+	0	NA	Intergenic	L2a|LINE|L2	-196259	NR_033407	1517	Hs.568350	NR_033407		CTSLP2	CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4	cathepsin L pseudogene 2	pseudo
1.18045-13	chr17	7754866	7755365	+	0	NA	intron (NM_001080424, intron 17 of 21)	CpG-10115	-3269	NM_203411	92162	Hs.389669	NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
10.0966	chr17	77454970	77455469	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	57011	NM_001082575	146713	Hs.135229	NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog 3	protein-coding
1.2436-13	chr5	131563484	131563983	+	0	NA	promoter-TSS (NM_001017973)	promoter-TSS (NM_001017973)	-177	NM_001142598	8974	Hs.519568	NM_004199	ENSG00000072682	P4HA2	MYP25	prolyl 4-hydroxylase subunit alpha 2	protein-coding
0.736576-5	chr7	100743344	100743843	+	0	NA	Intergenic	Intergenic	14873	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
0.48177-33	chr1	246859660	246860159	+	0	NA	Intergenic	Intergenic	-27469	NM_016002	51097	Hs.498397	NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
0.310503-18	chr12	49741379	49741878	+	0	NA	5' UTR (NM_001304944, exon 2 of 4)	5' UTR (NM_001304944, exon 2 of 4)	928	NM_024902	79962	Hs.659300	NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
1.54902-9	chr5	94956058	94956557	+	0	NA	exon (NM_199243, exon 1 of 1)	exon (NM_199243, exon 1 of 1)	327	NM_199243	285601	Hs.143315	NM_199243	ENSG00000178015	GPR150	PGR11	G protein-coupled receptor 150	protein-coding
2.44888-6	chr13	97996738	97997237	+	0	NA	intron (NM_001306070, intron 4 of 7)	intron (NM_001306070, intron 4 of 7)	-89488	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
0.0348833-10	chr17	74581953	74582452	+	0	NA	promoter-TSS (NM_006456)	promoter-TSS (NM_006456)	-57	NM_006456	10610	Hs.592105	NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
32.5885-2	chr3	108108208	108108707	+	0	NA	intron (NM_014981, intron 38 of 41)	L2a|LINE|L2	77825	NM_001282557	11148	Hs.225968	NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HERV-H LTR-associating 2	protein-coding
0.48177-20	chr15	57185159	57185658	+	0	NA	intron (NR_015419, intron 2 of 3)	L2c|LINE|L2	-24880	NM_001322151	6938	Hs.511504	NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20	transcription factor 12	protein-coding
1.12946-14	chr10	88841231	88841730	+	0	NA	intron (NM_001318906, intron 1 of 13)	SVA_D|Other|Other	12364	NM_001318900	2746	Hs.500409	NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD	glutamate dehydrogenase 1	protein-coding
1.40862-9	chr6	19999786	20000285	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	162434	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding
6.00326-12	chr5	14666005	14666504	+	0	NA	intron (NM_138348, intron 1 of 6)	intron (NM_138348, intron 1 of 6)	1500	NM_138348	90268	Hs.406335	NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM	OTU deubiquitinase with linear linkage specificity	protein-coding
1.22629-19	chr2	43286545	43287044	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-20112	NR_110585	102723854	Hs.570165	NR_110585	ENSG00000231826	LINC01819	-	long intergenic non-protein coding RNA 1819	ncRNA
5.01689-3	chr17	64747158	64747657	+	0	NA	intron (NM_002737, intron 13 of 16)	MIRb|SINE|MIR	-35783	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
12.7654-3	chr8	146077631	146078130	+	0	NA	intron (NM_001081003, intron 1 of 1)	intron (NM_001081003, intron 1 of 1)	572	NM_001081004	28991	Hs.493218	NM_014066	ENSG00000170619	COMMD5	HCARG|HT002	COMM domain containing 5	protein-coding
0.736576-6	chr1	153483325	153483824	+	0	NA	Intergenic	Intergenic	25143	NM_014624	6277	Hs.275243	NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA	S100 calcium binding protein A6	protein-coding
0.952845-4	chr6	149637906	149638405	+	0	NA	promoter-TSS (NM_001292034)	promoter-TSS (NM_001292034)	-908	NM_001292034	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
25.6067-2	chrX	42323421	42323920	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	313816	NR_002191	80316	Hs.127689	NM_025210	ENSG00000102055	PPP1R2P9	I-4	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 9	pseudo
10.07	chr5	54866911	54867410	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-36254	NR_103485	8611	Hs.696231	NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
1.12946-27	chr10	48361109	48361608	+	0	NA	intron (NM_001346934, intron 2 of 2)	intron (NM_001346934, intron 2 of 2)	6334	NM_001346932	118738	Hs.27788	NM_153034	ENSG00000265763	ZNF488	-	zinc finger protein 488	protein-coding
1.79142-2	chr2	76015204	76015703	+	0	NA	Intergenic	Intergenic	-77342	NM_003203	6936	Hs.303808	NM_003203	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
5.55955-7	chr20	23870248	23870747	+	0	NA	Intergenic	Intergenic	-10117	NM_001900	1473	Hs.121489	NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
5.95166-3	chr6	84817290	84817789	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	73701	NM_001346544	112609	Hs.370055	NM_138409	ENSG00000135324	MRAP2	C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
1.53045-20	chr2	191513339	191513838	+	0	NA	promoter-TSS (NM_001321312)	promoter-TSS (NM_001321312)	-33	NM_001321313	4664	Hs.107474	NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
1.0902-14	chr8	143524548	143525047	+	0	NA	Intergenic	Intergenic	-20580	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
7.47147-14	chr8	38007990	38008489	+	0	NA	intron (NM_000349, intron 1 of 6)	intron (NM_000349, intron 1 of 6)	361	NM_000349	6770	Hs.521535	NM_000349	ENSG00000147465	STAR	STARD1	steroidogenic acute regulatory protein	protein-coding
2.13959-11	chr5	78280789	78281288	+	0	NA	exon (NM_000046, exon 1 of 8)	exon (NM_000046, exon 1 of 8)	728	NM_198709	411	Hs.149103	NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
24.5469	chr6	33662061	33662560	+	0	NA	intron (NM_002224, intron 56 of 57)	intron (NM_002224, intron 56 of 57)	-3595	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
0.132283-25	chr2	45165770	45166269	+	0	NA	Intergenic	CpG	2627	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
12.4795	chr17	75327443	75327942	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	12095	NM_006640	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
3.1158-8	chr16	46722391	46722890	+	0	NA	promoter-TSS (NM_014321)	promoter-TSS (NM_014321)	504	NM_018206	55737	Hs.454528	NM_018206	ENSG00000069329	VPS35	MEM3|PARK17	VPS35, retromer complex component	protein-coding
3.7366-2	chr1	161438847	161439346	+	0	NA	Intergenic	CpG	-36109	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
2.63603-4	chr11	31833189	31833864	+	0	NA	promoter-TSS (NM_001258465)	promoter-TSS (NM_001258465)	205	NM_001258463	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
1.19186-12	chr20	23400991	23401490	+	0	NA	intron (NM_001283020, intron 1 of 9)	CpG	916	NM_022080	63908	Hs.269471	NM_022080	ENSG00000125814	NAPB	SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
1.9382-4	chr3	123116732	123117231	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	18208	NM_001199642	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
13.8195-4	chr11	121005581	121006080	+	0	NA	intron (NM_005422, intron 9 of 22)	intron (NM_005422, intron 9 of 22)	32455	NM_005422	7007	Hs.248162	NM_005422	ENSG00000109927	TECTA	DFNA12|DFNA8|DFNB21	tectorin alpha	protein-coding
0.310503-33	chr2	38100257	38100756	+	0	NA	intron (NR_110012, intron 1 of 3)	intron (NR_110012, intron 1 of 3)	2500	NR_110012	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
1.82435-24	chr1	54871921	54872420	+	0	NA	promoter-TSS (NM_145716)	promoter-TSS (NM_145716)	-102	NM_145716	23648	Hs.476706	NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
1.58015-6	chr12	96183670	96184169	+	0	NA	promoter-TSS (NM_001329702)	promoter-TSS (NM_001329702)	54	NM_001329702	59277	Hs.201034	NM_021229	ENSG00000074527	NTN4	PRO3091	netrin 4	protein-coding
3.39135-10	chr14	23276352	23276851	+	0	NA	intron (NM_001126106, intron 3 of 10)	L2c|LINE|L2	8500	NR_040448	9056	Hs.513147	NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
6.07303-2	chr7	75518430	75518929	+	0	NA	TTS (NM_001040457)	TTS (NM_001040457)	10369	NM_001346187	57414	Hs.488827	NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
0.419142-8	chr10	18580086	18580585	+	0	NA	intron (NM_001330060, intron 1 of 12)	intron (NM_001330060, intron 1 of 12)	30751	NM_000724	783	Hs.59093	NM_000724	ENSG00000165995	CACNB2	CACNLB2|CAVB2|MYSB	calcium voltage-gated channel auxiliary subunit beta 2	protein-coding
0.296531-80	chr14	39644637	39645136	+	0	NA	intron (NM_002687, intron 1 of 8)	CpG	499	NM_002687	5411	Hs.409965	NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
16.1618-8	chr20	30147796	30148295	+	0	NA	intron (NM_178580, intron 9 of 12)	intron (NM_178580, intron 9 of 12)	13021	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
3.48722-11	chr1	225650190	225651115	+	0	NA	Intergenic	LTR26|LTR|ERV1	-34095	NM_194442	3930	Hs.435166	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
0.639892	chr5	14011589	14012088	+	0	NA	Intergenic	CpG	-67249	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding
1.37869-3	chr19	8210596	8211095	+	0	NA	intron (NM_001321431, intron 4 of 63)	intron (NM_001321431, intron 4 of 63)	2908	NM_001321431	84467	Hs.370362	NM_032447	ENSG00000142449	FBN3	-	fibrillin 3	protein-coding
3.48722-5	chr6	122050216	122050715	+	0	NA	Intergenic	SVA_B|Other|Other	293742	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
0.296531-149	chr1	147558406	147558905	+	0	NA	Intergenic	Intergenic	49437	NM_001101663	200030	Hs.721588	NM_183372	ENSG00000263956	NBPF11	NBPF24	neuroblastoma breakpoint family member 11	protein-coding
3.68556-11	chr1	156783487	156783986	+	0	NA	exon (NM_003975, exon 5 of 9)	exon (NM_003975, exon 5 of 9)	-1806	NM_001007792	4914	Hs.406293	NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
8.69666-4	chr4	83375499	83375998	+	0	NA	intron (NM_021204, intron 3 of 5)	intron (NM_021204, intron 3 of 5)	24115	NR_120457	58478	Hs.18442	NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
5.59091-3	chr1	245527091	245527590	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	209053	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
3.32547-3	chr2	45178888	45179387	+	0	NA	Intergenic	Intergenic	10100	NM_005413	6496	Hs.567336	NM_005413	ENSG00000138083	SIX3	HPE2	SIX homeobox 3	protein-coding
0.218195-14	chr22	46373381	46373880	+	0	NA	promoter-TSS (NM_058238)	promoter-TSS (NM_058238)	-622	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
16.073-2	chr19	5841304	5841803	+	0	NA	Intergenic	Intergenic	-1811	NM_001040701	2528	Hs.631846	NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
6.8403-2	chr10	72434065	72434564	+	0	NA	exon (NM_139155, exon 2 of 22)	exon (NM_139155, exon 2 of 22)	2052	NM_139155	140766	Hs.352156	NM_080722	ENSG00000138316	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein-coding
11.3668	chr5	40676618	40677117	+	0	NA	Intergenic	Intergenic	-3165	NM_000958	5734	Hs.199248	NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
0.888424-28	chr4	48775597	48776096	+	0	NA	intron (NM_015030, intron 1 of 63)	AluJo|SINE|Alu	6470	NM_015030	285527	Hs.595553	NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
6.75718-16	chr1	37307406	37307905	+	0	NA	intron (NM_000831, intron 9 of 15)	intron (NM_000831, intron 9 of 15)	192189	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding
0.0833099	chr2	27273528	27274219	+	0	NA	promoter-TSS (NR_104246)	promoter-TSS (NR_104246)	-418	NR_138023	60509	Hs.138207	NM_021831	ENSG00000084693	AGBL5	CCP5|RP75	ATP/GTP binding protein like 5	protein-coding
0.25028-28	chr14	34145173	34145672	+	0	NA	exon (NM_001165893, exon 5 of 11)	exon (NM_001165893, exon 5 of 11)	-32721	NR_132771	106635522		NR_132771		SNORA89	-	small nucleolar RNA, H/ACA box 89	snoRNA
0.48177-40	chr17	1921916	1922415	+	0	NA	intron (NR_135642, intron 1 of 1)	intron (NR_135642, intron 1 of 1)	1155	NR_135642	105371485	Hs.655867	NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
1.15771-25	chr8	41998457	41998956	+	0	NA	Intergenic	Intergenic	-11758	NM_001134296	10947	Hs.654529	NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 mu 2 subunit	protein-coding
4.53457-3	chr6	86387848	86388347	+	0	NA	promoter-TSS (NR_003044)	promoter-TSS (NR_003044)	354	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5	ncRNA
0.0348833-4	chr7	95664584	95665083	+	0	NA	intron (NM_001278422, intron 11 of 15)	intron (NM_001278422, intron 11 of 15)	184235	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
8.50781-12	chr10	123900726	123901225	+	0	NA	intron (NM_206861, intron 4 of 19)	intron (NM_206861, intron 4 of 19)	-21966	NM_001291878	10579	Hs.501252	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	transforming acidic coiled-coil containing protein 2	protein-coding
12.5571	chr4	128702768	128703267	+	0	NA	promoter-TSS (NM_001317383)	promoter-TSS (NM_001317383)	41	NM_001317381	22824	Hs.135554	NM_014278	ENSG00000164070	HSPA4L	APG-1|HSPH3|Osp94	heat shock protein family A (Hsp70) member 4 like	protein-coding
5.05845-9	chr19	3360426	3360925	+	0	NA	intron (NM_205843, intron 1 of 10)	CpG-12487	1114	NM_001245005	4782	Hs.170131	NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
0.2365-22	chr20	17517518	17518017	+	0	NA	intron (NM_001278608, intron 3 of 9)	intron (NM_001278608, intron 3 of 9)	-5753	NM_001195	631	Hs.129702	NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
1.76526-7	chr12	132663220	132663719	+	0	NA	Intergenic	CpG	27104	NM_021808	50614	Hs.301062	NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
0.721166-12	chrX	71458633	71459132	+	0	NA	promoter-TSS (NM_017669)	promoter-TSS (NM_017669)	-24	NM_017669	54821	Hs.47558	NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
5.52842-10	chr5	32143017	32143516	+	0	NA	intron (NM_022130, intron 2 of 3)	SVA_D|Other|Other	31159	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
10.3058	chr7	82754765	82755264	+	0	NA	intron (NM_014510, intron 3 of 19)	SVA_B|Other|Other	37183	NM_014510	27445	Hs.12376	NM_014510	ENSG00000186472	PCLO	ACZ|PCH3	piccolo presynaptic cytomatrix protein	protein-coding
0.952845-20	chr5	130506511	130507010	+	0	NA	intron (NR_121658, intron 1 of 2)	CpG	153	NM_001293735	90624	Hs.115467	NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
1.39063-23	chr7	20447360	20447859	+	0	NA	intron (NM_002214, intron 12 of 13)	intron (NM_002214, intron 12 of 13)	-76224	NR_110119	101927811	Hs.285724	NR_110119	ENSG00000271133	LOC101927811	-	uncharacterized LOC101927811	ncRNA
9.74694-13	chr18	60193753	60194252	+	0	NA	intron (NR_126534, intron 1 of 14)	CpG	3344	NR_126534	54877	Hs.114191	NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
1.20904-24	chr2	85109137	85109636	+	0	NA	Intergenic	Intergenic	-1017	NM_001080824	129293	Hs.469134	NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
22.2695	chr13	112133414	112133913	+	0	NA	Intergenic	Intergenic	-114693	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
1.78486-8	chr1	113257784	113258283	+	0	NA	promoter-TSS (NM_005167)	promoter-TSS (NM_005167)	-83	NM_005167	333926	Hs.655231	NM_005167	ENSG00000155367	PPM1J	PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
21.0513	chr15	36399000	36399499	+	0	NA	Intergenic	Intergenic	180192	NR_039735	100616293		NR_039735	ENSG00000265098	MIR4510	mir-4510	microRNA 4510	ncRNA
2.35824-19	chr1	216878992	216879491	+	0	NA	intron (NM_001243511, intron 2 of 7)	intron (NM_001243511, intron 2 of 7)	17573	NM_001438	2104	Hs.444225	NM_001438	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen related receptor gamma	protein-coding
7.14443-3	chr5	154128952	154129451	+	0	NA	intron (NM_015315, intron 1 of 18)	intron (NM_015315, intron 1 of 18)	36739	NM_015315	23367	Hs.292078	NM_015315	ENSG00000155506	LARP1	LARP	La ribonucleoprotein domain family member 1	protein-coding
0.376307-9	chr5	16937018	16937517	+	0	NA	promoter-TSS (NM_012334)	promoter-TSS (NM_012334)	-882	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
3.21482-7	chr20	4022353	4023126	+	0	NA	Intergenic	Intergenic	-26501	NM_007219	11237	Hs.547576	NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
0.070049-45	chr11	91149074	91149573	+	0	NA	Intergenic	L1PB1|LINE|L1	-546953	NR_031663	100302228		NR_031663	ENSG00000221586	MIR1261	MIRN1261|hsa-mir-1261	microRNA 1261	ncRNA
1.13509-5	chr16	72133144	72133643	+	0	NA	intron (NM_014003, intron 7 of 26)	intron (NM_014003, intron 7 of 26)	-5178	NM_001142318	54957	Hs.134406	NM_017853	ENSG00000140830	TXNL4B	DLP|Dim2	thioredoxin like 4B	protein-coding
1.69411-4	chr4	16899930	16900429	+	0	NA	non-coding (NR_130734, exon 1 of 7)	non-coding (NR_130734, exon 1 of 7)	253	NM_001130834	9079	Hs.714330	NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
21.1691	chr5	97700779	97701278	+	0	NA	Intergenic	Intergenic	-403971	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule family member b	protein-coding
0.565055	chr19	10526947	10527446	+	0	NA	promoter-TSS (NM_001243121)	promoter-TSS (NM_001243121)	-253	NM_001243121	5141	Hs.89901	NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
0.535477-12	chr5	171863903	171864402	+	0	NA	intron (NM_001017995, intron 1 of 12)	intron (NM_001017995, intron 1 of 12)	17375	NM_001308175	285590	Hs.285666	NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
3.0103	chr3	4508601	4509100	+	0	NA	exon (NM_001164675, exon 1 of 8)	exon (NM_001164675, exon 1 of 8)	116	NM_001164675	285362	Hs.350475	NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
2.52588-14	chr17	2303768	2304267	+	0	NA	5' UTR (NM_020310, exon 1 of 6)	5' UTR (NM_020310, exon 1 of 6)	241	NM_020310	4335	Hs.626579	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
5.73489-3	chr1	112933345	112933844	+	0	NA	Intergenic	Intergenic	-5206	NM_018704	55917	Hs.744100	NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
5.34617-7	chr5	106818840	106819339	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	187507	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
2.33587-11	chr4	71705335	71705834	+	0	NA	promoter-TSS (NM_002092)	promoter-TSS (NM_002092)	43	NM_002092	2926	Hs.309763	NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
1.89767-15	chr14	96343450	96343949	+	0	NA	intron (NR_038861, intron 1 of 1)	intron (NR_038861, intron 1 of 1)	590	NR_132398	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
13.5655	chr21	43491379	43491878	+	0	NA	intron (NM_001004416, intron 1 of 22)	intron (NM_001004416, intron 1 of 22)	202	NM_001004416	89766	Hs.242520	NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
1.55523-3	chr2	14774495	14775344	+	0	NA	promoter-TSS (NM_001291410)	promoter-TSS (NM_001291410)	-296	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding
0.329203-5	chr4	185185308	185185807	+	0	NA	Intergenic	Intergenic	-46443	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
1.27261-5	chr9	136024695	136025194	+	0	NA	promoter-TSS (NM_001042368)	promoter-TSS (NM_001042368)	-337	NM_001042368	5900	Hs.106185	NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
0.741724-3	chr1	174227201	174227700	+	0	NA	intron (NM_014857, intron 7 of 20)	AluJo|SINE|Alu	98898	NM_014857	9910	Hs.585378	NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
7.32828-6	chr8	141475032	141475531	+	0	NA	Intergenic	L2c|LINE|L2	-6603	NM_031466	83696	Hs.654911	NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex 9	protein-coding
16.4016	chr5	21937951	21938450	+	0	NA	intron (NM_001317227, intron 3 of 11)	MER76|LTR|ERVL	53637	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
3.83-7	chr9	14315058	14315557	+	0	NA	intron (NM_001190738, intron 1 of 8)	CpG-26348	-1262	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
0.721166-15	chr3	51740783	51741282	+	0	NA	promoter-TSS (NM_000839)	promoter-TSS (NM_000839)	-49	NM_000839	2912	Hs.121510	NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
3.22393-8	chr12	113573371	113573870	+	0	NA	promoter-TSS (NM_001193521)	promoter-TSS (NM_001193521)	-61	NM_001193521	8437	Hs.528693	NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
2.79014-22	chr16	30996656	30997155	+	0	NA	TTS (NM_014712)	TTS (NM_014712)	386	NM_001142777	80270	Hs.460618	NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
2.62013-3	chr15	102153626	102154125	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	38719	NM_001307960	80213	Hs.288912	NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
8.56985-10	chr7	1752635	1753134	+	0	NA	intron (NM_001128636, intron 1 of 1)	L2c|LINE|L2	4086	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
1.91789	chr7	2896418	2896917	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-12708	NM_001293092	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
8.76148-12	chr19	36982582	36983081	+	0	NA	TTS (NR_036504)	TTS (NR_036504)	-2027	NM_001300970	84924	Hs.533939	NM_032838	ENSG00000186017	ZNF566	-	zinc finger protein 566	protein-coding
9.87163-2	chr10	6205531	6206030	+	0	NA	intron (NM_001282630, intron 1 of 14)	CpG	-11555	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
0.0833099-12	chr8	38385469	38385968	+	0	NA	intron (NM_207412, intron 1 of 2)	intron (NM_207412, intron 1 of 2)	462	NM_207412	389649	Hs.546586	NM_207412	ENSG00000196166	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
1.36677-9	chr9	43686354	43686853	+	0	NA	intron (NM_001201380, intron 1 of 23)	intron (NM_001201380, intron 1 of 23)	1407	NR_111893	643827	Hs.521495	NM_001012280		CNTNAP3P2	-	contactin associated protein-like 3 pseudogene 2	pseudo
1.51195-5	chr20	3096043	3096542	+	0	NA	intron (NM_014948, intron 3 of 4)	intron (NM_014948, intron 3 of 4)	8735	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
0.624821-7	chr2	88899547	88900046	+	0	NA	intron (NM_004836, intron 2 of 16)	intron (NM_004836, intron 2 of 16)	24651	NM_001313915	9451	Hs.591589	NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
0.909791-11	chr5	141075065	141075564	+	0	NA	Intergenic	Intergenic	-13514	NM_022481	64411	Hs.726187	NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
3.83-11	chr12	7351761	7352260	+	0	NA	intron (NM_000319, intron 5 of 14)	SVA_D|Other|Other	9052	NM_000319	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
0.282604-14	chr11	129636842	129637341	+	0	NA	Intergenic	Intergenic	-48585	NM_001331212	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
2.55707-7	chr9	10612663	10613162	+	0	NA	promoter-TSS (NR_110696)	promoter-TSS (NR_110696)	-189	NM_002839	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
0.80399-12	chr4	103352325	103352824	+	0	NA	intron (NR_136202, intron 2 of 4)	intron (NR_136202, intron 2 of 4)	-69912	NM_003998	4790	Hs.618430	NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor kappa B subunit 1	protein-coding
24.1454	chr18	55869779	55870278	+	0	NA	intron (NM_001144970, intron 1 of 28)	intron (NM_001144970, intron 1 of 28)	7406	NM_001144970	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
14.2022-2	chr6	80314728	80315227	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-25845	NM_031469	83699	Hs.302772	NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
19.914	chr1	101775095	101775594	+	0	NA	Intergenic	Intergenic	-14049	NR_126402	104355286	Hs.568671	NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
0.277972-8	chr3	9885440	9885939	+	0	NA	promoter-TSS (NM_001142547)	promoter-TSS (NM_001142547)	13	NM_173659	285367	Hs.33719	NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridylate synthase domain containing 3	protein-coding
5.59091-6	chr2	47247054	47247553	+	0	NA	intron (NM_020458, intron 11 of 19)	intron (NM_020458, intron 11 of 19)	-78309	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
9.17215-11	chr6	34677080	34677579	+	0	NA	Intergenic	Intergenic	12607	NR_134626	101929243	Hs.643498	NR_134625	ENSG00000272288	LOC101929243	-	uncharacterized LOC101929243	ncRNA
4.03403-5	chr5	159342886	159343385	+	0	NA	promoter-TSS (NM_000679)	promoter-TSS (NM_000679)	-605	NM_000679	147	Hs.368632	NM_000679	ENSG00000170214	ADRA1B	ADRA1|ALPHA1BAR	adrenoceptor alpha 1B	protein-coding
0.883098-5	chr11	109998786	109999285	+	0	NA	intron (NM_033390, intron 1 of 5)	intron (NM_033390, intron 1 of 5)	34948	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
0.291884-6	chr6	27775140	27775639	+	0	NA	promoter-TSS (NM_003509)	promoter-TSS (NM_003509)	320	NM_003519	8340	Hs.137594	NM_003519	ENSG00000185130	HIST1H2BL	H2B/c|H2BFC|dJ97D16.4	histone cluster 1 H2B family member l	protein-coding
8.50781-6	chr7	5518331	5518830	+	0	NA	3' UTR (NM_024963, exon 5 of 5)	3' UTR (NM_024963, exon 5 of 5)	16968	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
16.3451	chr12	81544117	81544616	+	0	NA	intron (NM_001330243, intron 6 of 16)	UCON31|Unknown|Unknown	-7801	NR_039848	100616133		NR_039848	ENSG00000265227	MIR4699	-	microRNA 4699	ncRNA
12.321-2	chr21	40142604	40143103	+	0	NA	intron (NR_027065, intron 1 of 6)	intron (NR_027065, intron 1 of 6)	-1955	NR_027066	400866	Hs.278704	NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
0.952845-7	chr3	52719765	52720264	+	0	NA	promoter-TSS (NM_018313)	promoter-TSS (NM_018313)	78	NM_014366	26354	Hs.313544	NM_014366	ENSG00000163938	GNL3	C77032|E2IG3|NNP47|NS	G protein nucleolar 3	protein-coding
7.03335-2	chr2	132589989	132590488	+	0	NA	Intergenic	Intergenic	-31004	NM_214461	408029	Hs.145567	NM_214461		C2orf27B	-	chromosome 2 open reading frame 27B	protein-coding
0.105502-6	chr1	170658639	170659138	+	0	NA	intron (NM_006902, intron 1 of 4)	intron (NM_006902, intron 1 of 4)	25575	NM_022716	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
2.35824-21	chr17	1305857	1306356	+	0	NA	Intergenic	SVA_D|Other|Other	-2550	NM_006761	7531	Hs.513851	NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
2.97569-6	chr14	34650409	34650908	+	0	NA	Intergenic	Intergenic	-230374	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
15.5752	chr8	10235267	10235766	+	0	NA	intron (NM_001199729, intron 6 of 6)	intron (NM_001199729, intron 6 of 6)	-96559	NR_120604	101929191	Hs.595262	NR_120604	ENSG00000253641	LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
30.1144	chr18	55464262	55464761	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	5816	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
0.47692-9	chr11	133920095	133920594	+	0	NA	Intergenic	AluJb|SINE|Alu	18177	NR_027276	100128239	Hs.423734	NR_027276	ENSG00000204241	LOC100128239	-	uncharacterized LOC100128239	ncRNA
15.9688-3	chr4	89504803	89505302	+	0	NA	Intergenic	7SK|RNA|RNA	-8522	NM_001318505	8916	Hs.35804	NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
2.13959-21	chr17	65572176	65572675	+	0	NA	intron (NM_181671, intron 4 of 9)	MIR|SINE|MIR	-104724	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
6.9897-21	chr4	22517828	22518327	+	0	NA	promoter-TSS (NM_145290)	promoter-TSS (NM_145290)	-400	NM_145290	166647	Hs.99195	NM_145290	ENSG00000152990	ADGRA3	GPR125|PGR21|TEM5L	adhesion G protein-coupled receptor A3	protein-coding
2.09715-5	chr3	57583079	57583578	+	0	NA	promoter-TSS (NM_001660)	promoter-TSS (NM_001660)	-113	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
1.75224-4	chr3	33318655	33319154	+	0	NA	promoter-TSS (NM_012157)	promoter-TSS (NM_012157)	-30	NM_012157	25827	Hs.475872	NM_012157	ENSG00000153558	FBXL2	FBL2|FBL3	F-box and leucine rich repeat protein 2	protein-coding
0.520764-10	chr4	87994821	87995320	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	66917	NM_005935	4299	Hs.480190	NM_005935	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family member 1	protein-coding
0.76756-34	chr1	198740709	198741208	+	0	NA	Intergenic	Intergenic	87153	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
2.78189-6	chr10	1651725	1652224	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	83149	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
1.02373-23	chr2	173292778	173293277	+	0	NA	intron (NM_001079818, intron 1 of 24)	CpG	744	NM_001079818	3655	Hs.133397	NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6B|VLA-6	integrin subunit alpha 6	protein-coding
32.2915	chr1	218447407	218447906	+	0	NA	Intergenic	Intergenic	-10973	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
3.16053-3	chr14	105837076	105837575	+	0	NA	intron (NM_015197, intron 8 of 23)	intron (NM_015197, intron 8 of 23)	-27595	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
0.76756-15	chr6	107740853	107741352	+	0	NA	intron (NM_020381, intron 1 of 7)	Eulor9A|DNA|DNA	39677	NM_020381	57107	Hs.745008	NM_020381	ENSG00000164494	PDSS2	C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1	decaprenyl diphosphate synthase subunit 2	protein-coding
8.66461	chr2	44978839	44979338	+	0	NA	intron (NM_024766, intron 8 of 10)	MSTB|LTR|ERVL-MaLR	189558	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
6.45892-3	chr11	71496550	71497049	+	0	NA	Intergenic	Intergenic	-1758	NM_018172	55199	Hs.567527	NM_018172	ENSG00000158483	FAM86C1	FAM86C	family with sequence similarity 86 member C1	protein-coding
16.7778-5	chr3	123091212	123091711	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	43728	NM_001199642	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
3.80907	chr9	85677638	85678137	+	0	NA	5' UTR (NM_152573, exon 1 of 17)	5' UTR (NM_152573, exon 1 of 17)	156	NM_152573	158158	Hs.129136	NM_152573	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
0.296531-43	chr2	20423085	20423584	+	0	NA	intron (NM_001006946, intron 2 of 5)	CpG	1593	NM_002997	6382	Hs.224607	NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
14.437-7	chr2	95967876	95968375	+	0	NA	intron (NM_013434, intron 1 of 8)	MER5B|DNA|hAT-Charlie	5053	NM_013434	30818	Hs.437376	NM_013434	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	potassium voltage-gated channel interacting protein 3	protein-coding
13.2057-2	chr2	106697341	106697840	+	0	NA	Intergenic	L1MEe|LINE|L1	15477	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
25.6225-2	chrX	147226054	147226553	+	0	NA	Intergenic	Intergenic	163454	NM_152578	158521	Hs.128580	NM_152578	ENSG00000176988	FMR1NB	CT37|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding
1.85752-13	chr5	12934818	12935317	+	0	NA	Intergenic	LTR18A|LTR|ERVL	267096	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
54.8017	chr2	149822222	149822721	+	0	NA	intron (NM_004522, intron 11 of 25)	intron (NM_004522, intron 11 of 25)	18127	NR_111932	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
0.101054-16	chr11	118962665	118963164	+	0	NA	intron (NM_001258209, intron 10 of 12)	intron (NM_001258209, intron 10 of 12)	3263	NM_002105	3014	Hs.477879	NM_002105	ENSG00000188486	H2AFX	H2A.X|H2A/X|H2AX	H2A histone family member X	protein-coding
0.788339	chr11	75265253	75265752	+	0	NA	Intergenic	Intergenic	-7599	NM_001235	871	Hs.596449	NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
0.0305075-3	chr3	113233983	113234482	+	0	NA	promoter-TSS (NM_144718)	promoter-TSS (NM_144718)	-198	NM_001331078	152185	Hs.477144	NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
3.12471-10	chr6	143265152	143266042	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	741	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
18.9963	chr3	112962680	112963179	+	0	NA	intron (NM_001301861, intron 2 of 19)	MLT1J1|LTR|ERVL-MaLR	31585	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
3.05395-5	chr3	32463389	32463888	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	30475	NM_181472	112616	Hs.440494	NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
0.245682-41	chr2	115918057	115918556	+	0	NA	intron (NR_036580, intron 1 of 2)	intron (NR_036580, intron 1 of 2)	614	NR_036580	389023	Hs.97540	NR_036580	ENSG00000235026	DPP10-AS1	-	DPP10 antisense RNA 1	ncRNA
1.73277-6	chr12	81171798	81172297	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	15114	NR_120469	101928420	Hs.739989	NR_120468	ENSG00000257741	LINC01490	-	long intergenic non-protein coding RNA 1490	ncRNA
3.94695-6	chr6	43484478	43484977	+	0	NA	promoter-TSS (NM_203290)	promoter-TSS (NM_203290)	1	NM_015388	25844	Hs.440950	NM_015388	ENSG00000137207	YIPF3	C6orf109|FinGER3|KLIP1|dJ337H4.3	Yip1 domain family member 3	protein-coding
8.69666-8	chr11	123431728	123432227	+	0	NA	intron (NM_001286564, intron 1 of 19)	intron (NM_001286564, intron 1 of 19)	1007	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
1.45087-7	chr22	25348402	25348901	+	0	NA	Intergenic	CpG	-13337	NM_001001663	255349	Hs.329040	NM_001001663	ENSG00000206069	TMEM211	bA9F11.1	transmembrane protein 211	protein-coding
2.98432-10	chr10	94164658	94165157	+	0	NA	Intergenic	L2|LINE|L2	-13511	NR_038243	100507674	Hs.568772	NR_038243		MARK2P9	-	microtubule affinity regulating kinase 2 pseudogene 9	pseudo
19.5861-4	chr3	178458228	178458727	+	0	NA	intron (NM_001278911, intron 1 of 4)	intron (NM_001278911, intron 1 of 4)	119716	NR_126561	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
9.28118-9	chr1	100654074	100654573	+	0	NA	3' UTR (NM_001918, exon 11 of 11)	3' UTR (NM_001918, exon 11 of 11)	-10494	NM_001256386	127495	Hs.44277	NM_144620	ENSG00000122477	LRRC39	-	leucine rich repeat containing 39	protein-coding
0.190881-38	chr3	123420851	123421350	+	0	NA	intron (NM_053027, intron 16 of 32)	intron (NM_053027, intron 16 of 32)	12609	NR_046629	100873940	Hs.667316	NR_046629	ENSG00000250174	MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
0.644927-3	chr5	860767	861266	+	0	NA	Intergenic	Intergenic	-9915	NM_024786	79844	Hs.654874	NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
20.4096	chr18	73930502	73931001	+	0	NA	Intergenic	Intergenic	95798	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
2.1254-6	chr2	237089480	237089979	+	0	NA	Intergenic	Intergenic	-13077	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
3.48722-2	chr3	12800780	12801279	+	0	NA	promoter-TSS (NM_001284407)	promoter-TSS (NM_001284407)	-221	NM_001284408	55287	Hs.475502	NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
0.0261362-45	chr21	35273945	35274444	+	0	NA	Intergenic	Intergenic	13964	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5O	ATPO|HMC08D05|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
24.034	chr17	70948758	70949257	+	0	NA	intron (NM_001159770, intron 4 of 9)	intron (NM_001159770, intron 4 of 9)	139846	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding
2.30623-21	chr2	44058883	44059382	+	0	NA	exon (NM_022436, exon 3 of 13)	exon (NM_022436, exon 3 of 13)	6826	NM_022436	64240	Hs.132992	NM_022436	ENSG00000138075	ABCG5	STSL	ATP binding cassette subfamily G member 5	protein-coding
1.13509-6	chr11	115906660	115907159	+	0	NA	Intergenic	Intergenic	-275991	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
5.67031-6	chr4	154145024	154145523	+	0	NA	intron (NM_001302693, intron 1 of 2)	intron (NM_001302693, intron 1 of 2)	19707	NM_001302692	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
1.17475-11	chr1	2120876	2121375	+	0	NA	non-coding (NR_046427, exon 4 of 4)	non-coding (NR_046427, exon 4 of 4)	5089	NR_046427	199990	Hs.107101	NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	Fanconi anemia core complex associated protein 20	protein-coding
0.0568285-19	chr17	74816118	74816617	+	0	NA	Intergenic	Intergenic	21241	NR_110837	101928514	Hs.617206	NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
0.109954-2	chr19	4759699	4760198	+	0	NA	Intergenic	CpG	-9169	NR_027148	284424	Hs.326728	NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA
20.7314-2	chr1	46751647	46752146	+	0	NA	exon (NM_006369, exon 4 of 10)	exon (NM_006369, exon 4 of 10)	17142	NM_006369	10489	Hs.144941	NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
8.99629-13	chr18	10953666	10954165	+	0	NA	intron (NM_022068, intron 3 of 51)	LTR53|LTR|ERVL	-194268	NR_106846	102466735		NR_106846	ENSG00000274838	MIR6788	hsa-mir-6788	microRNA 6788	ncRNA
1.57391-10	chr1	101757140	101757639	+	0	NA	Intergenic	Intergenic	-32004	NR_126402	104355286	Hs.568671	NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
0.0833099-42	chr12	59241568	59242067	+	0	NA	Intergenic	Intergenic	-66319	NR_120452	101927653	Hs.130744	NR_120452	ENSG00000257259	LOC101927653	-	uncharacterized LOC101927653	ncRNA
10.3198-2	chr5	171808565	171809064	+	0	NA	intron (NM_001017995, intron 5 of 12)	intron (NM_001017995, intron 5 of 12)	72713	NM_001308175	285590	Hs.285666	NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
14.3533-2	chr18	45977545	45978044	+	0	NA	Intergenic	LTR1|LTR|ERV1	-42001	NM_001318841	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
14.1567-3	chr3	72817997	72818496	+	0	NA	intron (NM_018130, intron 10 of 10)	MER102a|DNA|hAT-Charlie	79352	NM_018130	55164	Hs.606584	NM_018130	ENSG00000144736	SHQ1	GRIM-1|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
0.540393-32	chr11	3112948	3113447	+	0	NA	intron (NM_145638, intron 18 of 20)	intron (NM_145638, intron 18 of 20)	-34516	NM_001751	833	Hs.274873	NM_001751	ENSG00000110619	CARS	CARS1|CYSRS|MGC:11246	cysteinyl-tRNA synthetase	protein-coding
0.296531-128	chr9_gl000199_random	139247	139746	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
8.56985	chr12	94376479	94376978	+	0	NA	Intergenic	Intergenic	-39346	NR_135017	105369911	Hs.577495	NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
1.41463-2	chr12	118310468	118310967	+	0	NA	intron (NM_173598, intron 1 of 19)	intron (NM_173598, intron 1 of 19)	95311	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
9.39302-26	chr10	34516848	34517347	+	0	NA	intron (NM_001184785, intron 22 of 24)	L1PA15|LINE|L1	-455489	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
3.56547-7	chr11	35940213	35940712	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-25069	NM_174902	143458	Hs.745134	NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
0.190881-31	chr2	211482445	211482944	+	0	NA	non-coding (NR_002763, exon 1 of 1)	non-coding (NR_002763, exon 1 of 1)	399	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
0.51587-8	chr2	227581379	227581878	+	0	NA	Intergenic	L1ME5|LINE|L1	-58119	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
12.0066-3	chr14	76407287	76407786	+	0	NA	intron (NM_015072, intron 31 of 31)	intron (NM_015072, intron 31 of 31)	40829	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
3.14258-4	chr12	59308170	59308669	+	0	NA	intron (NM_153377, intron 1 of 18)	intron (NM_153377, intron 1 of 18)	4908	NM_001136051	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
4.13413-2	chr17	17494837	17495336	+	0	NA	promoter-TSS (NM_148172)	promoter-TSS (NM_148172)	-69	NM_001267552	10400	Hs.714193	NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
5.55955-3	chr10	112631317	112631816	+	0	NA	promoter-TSS (NR_026932)	promoter-TSS (NR_026932)	13	NM_145341	27250	Hs.711490	NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
0.25028-25	chr7	143318223	143318722	+	0	NA	promoter-TSS (NM_173678)	promoter-TSS (NM_173678)	-70	NM_173678	285966	Hs.743565	NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A	TRPM8 channel associated factor 2	protein-coding
4.07823	chr7	155299385	155299884	+	0	NA	intron (NM_001103176, intron 3 of 3)	intron (NM_001103176, intron 3 of 3)	26905	NM_001103176	285888	Hs.146751	NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
1.21478-2	chr1	245938526	245939025	+	0	NA	intron (NM_001167740, intron 10 of 11)	SVA_D|Other|Other	620488	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
2.81498-9	chr5	14580628	14581127	+	0	NA	Intergenic	MIR|SINE|MIR	-1014	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding
9.10095	chr11	116386313	116386812	+	0	NA	Intergenic	Intergenic	-123577	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
0.070049-16	chrX	24711578	24712077	+	0	NA	promoter-TSS (NM_001330360)	promoter-TSS (NM_001330360)	-123	NM_001330360	5422	Hs.567319	NM_016937	ENSG00000101868	POLA1	NSX|POLA|p180	DNA polymerase alpha 1, catalytic subunit	protein-coding
0.496351-41	chr2	225224172	225224671	+	0	NA	Intergenic	MER74A|LTR|ERVL	42290	NM_024785	79843	Hs.147585	NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
0.204516-4	chr19	12099225	12099724	+	0	NA	intron (NR_134929, intron 1 of 2)	LTR13_|LTR|ERVK	1042	NR_134927	101928464	Hs.631643	NR_134927	ENSG00000219665	LOC101928464	-	uncharacterized LOC101928464	ncRNA
0.0261362-21	chr18	29958599	29959098	+	0	NA	intron (NM_022751, intron 2 of 5)	intron (NM_022751, intron 2 of 5)	91599	NM_001242409	64762	Hs.444314	NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding
1.35489-3	chr11	22813995	22814494	+	0	NA	intron (NM_001143830, intron 7 of 7)	intron (NM_001143830, intron 7 of 7)	36681	NR_135213	258010	Hs.349096	NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
8.38632-4	chr10	134260176	134260675	+	0	NA	intron (NM_173541, intron 2 of 2)	intron (NM_173541, intron 2 of 2)	1711	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
2.71646-7	chr7	138437175	138437674	+	0	NA	exon (NM_130841, exon 10 of 21)	exon (NM_130841, exon 10 of 21)	21358	NM_130841	50617	Hs.98967	NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
0.123337-25	chr10	72141151	72141650	+	0	NA	5' UTR (NM_207119, exon 1 of 5)	5' UTR (NM_207119, exon 1 of 5)	270	NM_207119	55222	Hs.7778	NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
5.43634-7	chr6	159179324	159179823	+	0	NA	intron (NM_001318745, intron 11 of 14)	intron (NM_001318745, intron 11 of 14)	6212	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
2.83162-4	chr11	9779533	9780032	+	0	NA	promoter-TSS (NR_036485)	promoter-TSS (NR_036485)	-58	NR_036485	283104	Hs.632156	NR_036485	ENSG00000246273	SBF2-AS1	-	SBF2 antisense RNA 1	ncRNA
1.27844-19	chr2	205129011	205129839	+	0	NA	Intergenic	Intergenic	-281091	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
16.2893-3	chr7	124701111	124701610	+	0	NA	intron (NR_125718, intron 4 of 10)	L1PA8|LINE|L1	-123263	NR_110188	101928283	Hs.566650	NR_110188	ENSG00000237764	LOC101928283	-	uncharacterized LOC101928283	ncRNA
0.218195-6	chr4	152090301	152090800	+	0	NA	intron (NM_001243349, intron 7 of 19)	intron (NM_001243349, intron 7 of 19)	6154	NM_001128924	152503	Hs.744983	NM_001009555	ENSG00000109686	SH3D19	EBP|EVE1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
52.4109	chr8	66057477	66057976	+	0	NA	Intergenic	Intergenic	34849	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA
3.74688-6	chr8	98657537	98658036	+	0	NA	intron (NM_178812, intron 1 of 11)	intron (NM_178812, intron 1 of 11)	1379	NM_178812	92140	Hs.377155	NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
4.67246-5	chr9	15510756	15511255	+	0	NA	promoter-TSS (NM_001317898)	promoter-TSS (NM_001317898)	12	NM_033222	11168	Hs.658434	NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SFRS1 interacting protein 1	protein-coding
1.24939-16	chr3	156393653	156394152	+	0	NA	promoter-TSS (NR_027954)	promoter-TSS (NR_027954)	-400	NR_027954	100287227	Hs.12813	NR_027954		TIPARP-AS1	-	TIPARP antisense RNA 1	ncRNA
1.38466-6	chr2	138417072	138417571	+	0	NA	intron (NM_001316349, intron 25 of 27)	intron (NM_001316349, intron 25 of 27)	268181	NR_120402	101928273	Hs.560928	NR_120402		LOC101928273	-	uncharacterized LOC101928273	ncRNA
1.30182-5	chr11	27451255	27451754	+	0	NA	intron (NM_018490, intron 1 of 17)	intron (NM_018490, intron 1 of 17)	-41774	NR_131170	105376671	Hs.568999	NR_131169	ENSG00000254862	LOC105376671	lnc-BBOX1-1	uncharacterized LOC105376671	ncRNA
4.22508-5	chr8	48649739	48650592	+	0	NA	exon (NM_005195, exon 1 of 1)	exon (NM_005195, exon 1 of 1)	561	NM_005195	1052	Hs.440829	NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein delta	protein-coding
2.78189-4	chr2	215925516	215926015	+	0	NA	intron (NR_103740, intron 3 of 54)	intron (NR_103740, intron 3 of 54)	-28955	NM_015657	26154	Hs.134585	NM_015657	ENSG00000144452	ABCA12	ARCI4A|ARCI4B|ICR2B|LI2	ATP binding cassette subfamily A member 12	protein-coding
4.02305-11	chr21	41419827	41420326	+	0	NA	intron (NM_001389, intron 30 of 32)	MIR|SINE|MIR	164282	NR_039917	100616148		NR_039917	ENSG00000263973	MIR4760	-	microRNA 4760	ncRNA
0.9691-6	chr6	158779638	158780137	+	0	NA	intron (NM_001007466, intron 1 of 12)	intron (NM_001007466, intron 1 of 12)	46195	NM_020245	56995	Hs.486993	NM_020245	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
0.741724-7	chr20	361493	361992	+	0	NA	promoter-TSS (NM_001301188)	promoter-TSS (NM_001301188)	-197	NM_001301201	57761	Hs.516826	NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
0.168249-22	chr11	32913911	32914410	+	0	NA	promoter-TSS (NM_001076786)	promoter-TSS (NM_001076786)	-564	NM_001076786	79832	Hs.369368	NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding
1.69411-7	chr17	4323793	4324292	+	0	NA	Intergenic	Intergenic	-13177	NM_182538	201305	Hs.657543	NM_182538	ENSG00000182557	SPNS3	-	sphingolipid transporter 3 (putative)	protein-coding
27.9317-3	chr7	146679378	146679877	+	0	NA	intron (NM_014141, intron 3 of 23)	intron (NM_014141, intron 3 of 23)	115074	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
0.990869-18	chr16	2610671	2611170	+	0	NA	intron (NM_001261816, intron 2 of 11)	intron (NM_001261816, intron 2 of 11)	22955	NM_031268	5170	Hs.459691	NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
13.7059-2	chr3	127604915	127605414	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-36738	NM_207335	166348	Hs.132087	NM_207335	ENSG00000187715	KBTBD12	KLHDC6	kelch repeat and BTB domain containing 12	protein-coding
5.51294-3	chr16	81674848	81675347	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	-23862	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
0.540393-27	chr2	236172174	236172673	+	0	NA	Intergenic	Intergenic	-230310	NM_001244888	116987	Hs.435039	NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
6.88246-2	chr10	50746667	50747435	+	0	NA	5' UTR (NM_000124, exon 1 of 21)	5' UTR (NM_000124, exon 1 of 21)	118	NM_001346440	2074	Hs.49063	NM_000124	ENSG00000225830	ERCC6	ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1	ERCC excision repair 6, chromatin remodeling factor	protein-coding
8.01343-9	chr16	81480014	81480513	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	1488	NM_198390	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
20.8884	chr8	98883632	98884131	+	0	NA	intron (NM_002380, intron 1 of 18)	intron (NM_002380, intron 1 of 18)	2632	NM_030583	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
4.05607-2	chr2	225867291	225867790	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	7717	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
2.02732-10	chr8	131093609	131094108	+	0	NA	intron (NM_001247996, intron 26 of 30)	intron (NM_001247996, intron 26 of 30)	3156	NR_045385	100507117	Hs.106015	NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
4.00117-5	chr19	34114070	34114569	+	0	NA	intron (NM_001127896, intron 1 of 3)	CpG	1446	NM_001127896	64377	Hs.165724	NM_022467	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST|PSS3	carbohydrate sulfotransferase 8	protein-coding
26.7366	chr2	158877680	158878179	+	0	NA	intron (NM_001135098, intron 2 of 8)	intron (NM_001135098, intron 2 of 8)	26238	NM_001135098	151531	Hs.128427	NM_173355	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
0.0921731-18	chr8	7770869	7771368	+	0	NA	Intergenic	Intergenic	-12741	NM_001193630	100132396	Hs.546691	NM_001193630	ENSG00000215356	ZNF705B	-	zinc finger protein 705B	protein-coding
0.731433-10	chr19	5046163	5046662	+	0	NA	intron (NM_015015, intron 5 of 22)	intron (NM_015015, intron 5 of 22)	77288	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding
0.721166-16	chr12	100557763	100558262	+	0	NA	TTS (NR_024261)	TTS (NR_024261)	9109	NR_024261	55592	Hs.524660	NM_017600	ENSG00000238105	GOLGA2P5	GOLGA2B|GOLGA2L1	golgin A2 pseudogene 5	pseudo
6.59556-4	chr2	47600832	47601331	+	0	NA	exon (NM_002354, exon 3 of 9)	exon (NM_002354, exon 3 of 9)	-3733	NR_030286	693144		NR_030286	ENSG00000207923	MIR559	MIRN559|hsa-mir-559	microRNA 559	ncRNA
1.99283-4	chr2	241862327	241862826	+	0	NA	Intergenic	Intergenic	-27003	NM_001085437	79919	Hs.193745	NM_024861	ENSG00000172478	C2orf54	-	chromosome 2 open reading frame 54	protein-coding
1.82435-2	chr1	209848441	209848940	+	0	NA	promoter-TSS (NM_015714)	promoter-TSS (NM_015714)	20	NM_015714	50486	Hs.432132	NM_015714	ENSG00000123689	G0S2	-	G0/G1 switch 2	protein-coding
4.25969-22	chr6	14729309	14729808	+	0	NA	Intergenic	Intergenic	-443873	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
0.920515-9	chr2	25474518	25475017	+	0	NA	intron (NM_153759, intron 1 of 18)	CpG	233	NM_001320893	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
0.589858-39	chr19	7294738	7295237	+	0	NA	promoter-TSS (NM_000208)	promoter-TSS (NM_000208)	-674	NM_000208	3643	Hs.465744	NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
1.45087-18	chr1	220391921	220392420	+	0	NA	intron (NM_012414, intron 2 of 34)	intron (NM_012414, intron 2 of 34)	-18152	NR_002994	677818	Hs.730572	NR_002994	ENSG00000222370	SNORA36B	ACA36b	small nucleolar RNA, H/ACA box 36B	snoRNA
18.8606	chr14	76436138	76436637	+	0	NA	intron (NM_001329939, intron 4 of 7)	L2b|LINE|L2	11978	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
8.99629	chr1	111341217	111341716	+	0	NA	Intergenic	Intergenic	-72355	NM_001040033	963	Hs.443057	NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
11.5927-6	chr16	27780905	27781404	+	0	NA	intron (NM_015202, intron 20 of 27)	intron (NM_015202, intron 20 of 27)	118324	NM_144675	146395	Hs.91910	NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
0.231917-27	chr2	103422640	103423139	+	0	NA	intron (NM_001321344, intron 5 of 5)	intron (NM_001321344, intron 5 of 5)	44399	NM_144632	130827	Hs.436203	NM_144632	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
50.3621	chr7	121670244	121670743	+	0	NA	intron (NM_002851, intron 14 of 29)	intron (NM_002851, intron 14 of 29)	113851	NM_005763	10157	Hs.156738	NM_005763	ENSG00000008311	AASS	LKR/SDH|LKRSDH|LORSDH	aminoadipate-semialdehyde synthase	protein-coding
1.10138-4	chr12	112704759	112705258	+	0	NA	intron (NM_001109662, intron 13 of 75)	7SK|RNA|RNA	-103883	NR_106921	102465519		NR_106921	ENSG00000173064	MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
6.7162	chr4	25863932	25864898	+	0	NA	exon (NM_015187, exon 1 of 24)	exon (NM_015187, exon 1 of 24)	238	NM_015187	23231	Hs.479384	NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
1.59267-12	chr11	60681991	60682490	+	0	NA	intron (NM_024092, intron 1 of 3)	CpG	869	NM_024092	79073	Hs.13662	NM_024092	ENSG00000110108	TMEM109	-	transmembrane protein 109	protein-coding
0.145735-19	chr1	192458049	192458548	+	0	NA	Intergenic	Intergenic	-86559	NM_002922	5996	Hs.75256	NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G-protein signaling 1	protein-coding
9.06578-13	chr12	12719344	12719843	+	0	NA	Intergenic	SVA_D|Other|Other	-4145	NM_030640	80824	Hs.536535	NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
0.589858	chr1	20193203	20193702	+	0	NA	Intergenic	Intergenic	-15436	NM_015207	23252	Hs.374987	NM_015207	ENSG00000169914	OTUD3	DUBA4	OTU deubiquitinase 3	protein-coding
0.5061-25	chr18	72934644	72935143	+	0	NA	intron (NM_001308210, intron 1 of 1)	AmnSINE2|SINE|Deu	11409	NM_001308210	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
0.0130484-3	chr16	57506470	57506969	+	0	NA	TTS (NM_032940)	TTS (NM_032940)	7060	NM_001330556	55715	Hs.279832	NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
0.0305075-7	chr2	226294369	226294868	+	0	NA	intron (NM_020864, intron 2 of 5)	intron (NM_020864, intron 2 of 5)	29016	NM_020864	57624	Hs.224409	NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
0.376307-5	chr1	66825796	66826295	+	0	NA	intron (NM_001037339, intron 2 of 9)	intron (NM_001037339, intron 2 of 9)	5984	NM_001297442	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
0.609802-27	chr5	158636499	158636998	+	0	NA	promoter-TSS (NM_001199383)	promoter-TSS (NM_001199383)	-185	NM_001199383	153830	Hs.349306	NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
1.87087-2	chr1	245026339	245026838	+	0	NA	intron (NM_004501, intron 1 of 13)	CpG	1239	NM_004501	3192	Hs.106212	NM_004501	ENSG00000153187	HNRNPU	HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding
4.63442	chr4	146019316	146019815	+	0	NA	promoter-TSS (NM_001256706)	promoter-TSS (NM_001256706)	128	NM_001256708	10393	Hs.480876	NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
0.0568285-2	chr17	55993342	55993841	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	-12841	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
3.81952-5	chr9	45074626	45075125	+	0	NA	Intergenic	Intergenic	-69585	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
0.94744	chr5	56110590	56111089	+	0	NA	promoter-TSS (NM_005921)	promoter-TSS (NM_005921)	-61	NM_005921	4214	Hs.653654	NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
20.0612-2	chr2	145451945	145452444	+	0	NA	intron (NR_033870, intron 1 of 4)	intron (NR_033870, intron 1 of 4)	26660	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
0.222764-18	chr3	154041677	154042176	+	0	NA	intron (NM_001114397, intron 1 of 24)	intron (NM_001114397, intron 1 of 24)	360	NM_020865	170506	Hs.446270	NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
42.1183	chr18	71423236	71423735	+	0	NA	Intergenic	Intergenic	391514	NM_152676	201456	Hs.664011	NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
27.167	chr6	94173783	94174282	+	0	NA	Intergenic	LTR33|LTR|ERVL	-44732	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
15.7675-14	chr6	55501261	55501760	+	0	NA	Intergenic	Intergenic	-57498	NM_001287741	54511	Hs.147054	NM_019036	ENSG00000146151	HMGCLL1	bA418P12.1|er-cHL	3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1	protein-coding
2.21126-3	chr18	77798272	77798771	+	0	NA	exon (NM_001171967, exon 4 of 6)	exon (NM_001171967, exon 4 of 6)	4175	NM_001171967	79863	Hs.728931	NM_024805	ENSG00000101546	RBFA	C18orf22|HsT169	ribosome binding factor A (putative)	protein-coding
2.48721-9	chr5	73336670	73337169	+	0	NA	Intergenic	MIRb|SINE|MIR	227576	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
5.83359-5	chr2	133802119	133802618	+	0	NA	intron (NM_207481, intron 6 of 17)	AluJo|SINE|Alu	129238	NR_135572	101928185	Hs.680114	NR_135572	ENSG00000233729	LOC101928185	-	uncharacterized LOC101928185	ncRNA
1.09579-15	chr1	45097490	45097989	+	0	NA	intron (NM_001319956, intron 5 of 14)	CpG	42541	NM_001300747	79639	Hs.22157	NM_024587	ENSG00000126106	TMEM53	NET4	transmembrane protein 53	protein-coding
0.530567-2	chr21	40685587	40686086	+	0	NA	promoter-TSS (NM_018963)	promoter-TSS (NM_018963)	3	NR_111942	103091865	Hs.190548	NR_111942	ENSG00000255568	BRWD1-IT2	-	BRWD1 intronic transcript 2 (non-protein coding)	ncRNA
3.7059-2	chr8	117692625	117693124	+	0	NA	intron (NM_003756, intron 2 of 7)	SVA_E|Other|Other	28535	NR_136278	105375713		NR_136278		LOC105375713	-	uncharacterized LOC105375713	ncRNA
3.8405-26	chr5	6175480	6175979	+	0	NA	Intergenic	Intergenic	161676	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
0.0305075-79	chr3	136502333	136502832	+	0	NA	Intergenic	Intergenic	-31337	NM_005862	10274	Hs.412586	NM_005862	ENSG00000118007	STAG1	SA1|SCC3A	stromal antigen 1	protein-coding
4.97573-10	chr10	89339	89838	+	0	NA	Intergenic	Intergenic	5590	NM_177987	347688	Hs.532659	NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
0.472076-2	chr11	70448158	70448657	+	0	NA	intron (NM_012309, intron 14 of 22)	MSTA|LTR|ERVL-MaLR	-28792	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	ncRNA
8.96196-17	chr2	206628461	206628960	+	0	NA	intron (NM_018534, intron 13 of 15)	intron (NM_018534, intron 13 of 15)	81486	NM_018534	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
0.0480371	chr21	37693905	37694404	+	0	NA	intron (NM_001320445, intron 1 of 15)	intron (NM_001320445, intron 1 of 15)	1667	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
2.75724-6	chr17	58754573	58755072	+	0	NA	promoter-TSS (NM_017679)	promoter-TSS (NM_017679)	-314	NM_001330414	54828	Hs.655028	NM_017679	ENSG00000141376	BCAS3	GAOB1|MAAB	BCAS3, microtubule associated cell migration factor	protein-coding
1.35489-2	chr5	179233825	179234324	+	0	NA	promoter-TSS (NM_014275)	promoter-TSS (NM_014275)	71	NM_001142299	8878	Hs.587290	NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
0.496351-51	chr7	30185609	30186108	+	0	NA	exon (NM_152793, exon 2 of 3)	exon (NM_152793, exon 2 of 3)	11306	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
10.9909	chr5	167690061	167690560	+	0	NA	3' UTR (NM_001122679, exon 29 of 29)	3' UTR (NM_001122679, exon 29 of 29)	-28755	NM_001161661	23286	Hs.484047	NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
3.01899-7	chr4	186179864	186180363	+	0	NA	exon (NM_001317781, exon 3 of 19)	exon (NM_001317781, exon 3 of 19)	54722	NM_001317781	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
3.08035-10	chr8	134770857	134771356	+	0	NA	Intergenic	SVA_D|Other|Other	18489	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
1.86419-17	chr7	81646565	81647064	+	0	NA	intron (NM_000722, intron 12 of 38)	intron (NM_000722, intron 12 of 38)	8321	NR_110076	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA
0.00434512-11	chr3	122249066	122249565	+	0	NA	intron (NM_031458, intron 10 of 10)	intron (NM_031458, intron 10 of 10)	-15529	NR_026698	3836	Hs.161008	NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
17.3518-3	chr2	169408892	169409391	+	0	NA	intron (NM_203463, intron 2 of 9)	intron (NM_203463, intron 2 of 9)	-30312	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
7.14443-14	chr20	32646541	32647040	+	0	NA	intron (NM_007367, intron 2 of 8)	intron (NM_007367, intron 2 of 8)	9865	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
0.177288-10	chr6	151562643	151563142	+	0	NA	intron (NM_005100, intron 2 of 4)	intron (NM_005100, intron 2 of 4)	1758	NM_005100	9590	Hs.371240	NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
0.419142-12	chr20	25450537	25451036	+	0	NA	intron (NM_001318226, intron 16 of 22)	intron (NM_001318226, intron 16 of 22)	62467	NM_021067	9837	Hs.658464	NM_021067	ENSG00000101003	GINS1	PSF1	GINS complex subunit 1	protein-coding
0.91515-7	chr4	145568191	145568690	+	0	NA	intron (NM_022475, intron 1 of 12)	intron (NM_022475, intron 1 of 12)	-1269	NR_037595	646576	Hs.632595	NR_037595	ENSG00000248890	HHIP-AS1	-	HHIP antisense RNA 1	ncRNA
10.6148-2	chr3	5284031	5284530	+	0	NA	Intergenic	SVA_B|Other|Other	7660	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
1.87755-9	chr5	111093603	111094102	+	0	NA	promoter-TSS (NM_004772)	promoter-TSS (NM_004772)	-59	NM_001142477	9315	Hs.36053	NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
1.70053-2	chr10	22605138	22605637	+	0	NA	promoter-TSS (NM_001204062)	promoter-TSS (NM_001204062)	75	NM_012071	23412	Hs.534398	NM_012071	ENSG00000148444	COMMD3	BUP|C10orf8	COMM domain containing 3	protein-coding
10.8355-5	chr6	25670377	25670876	+	0	NA	intron (NM_006998, intron 6 of 10)	intron (NM_006998, intron 6 of 10)	18197	NM_006998	10590	Hs.116428	NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
2.69218	chr2	242823797	242824296	+	0	NA	intron (NR_110220, intron 1 of 3)	intron (NR_110220, intron 1 of 3)	532	NR_110220	101927289	Hs.130180	NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
5.17126-9	chr1	156024247	156024746	+	0	NA	promoter-TSS (NM_001145264)	promoter-TSS (NM_001145264)	-21	NM_001145264	28956	Hs.632483	NM_014017	ENSG00000116586	LAMTOR2	ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding
0.94744-3	chr2	29092742	29093241	+	0	NA	exon (NM_017910, exon 1 of 7)	exon (NM_017910, exon 1 of 7)	184	NM_017910	55006	Hs.468026	NM_017910	ENSG00000171103	TRMT61B	-	tRNA methyltransferase 61B	protein-coding
6.92504-2	chr9	79073803	79074302	+	0	NA	promoter-TSS (NM_001490)	promoter-TSS (NM_001490)	-16	NM_001490	2650	Hs.521568	NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding
12.5964-5	chrUn_gl000214	125715	126214	+	0	NA	NA	Intergenic	NA	NA								
3.41035-11	chr15	66444099	66444598	+	0	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	101727	NM_032445	84465	Hs.712886	NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding
3.01899-4	chr9	68377241	68377740	+	0	NA	Intergenic	CpG	-37818	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
1.60522-11	chr1	109656411	109656910	+	0	NA	promoter-TSS (NM_001122961)	promoter-TSS (NM_001122961)	75	NM_001284352	57535	Hs.708190	NM_020775	ENSG00000116299	KIAA1324	EIG121	KIAA1324	protein-coding
0.352691-8	chr3	129035267	129035766	+	0	NA	promoter-TSS (NM_006026)	promoter-TSS (NM_006026)	-396	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1.10|H1X	H1 histone family member X	protein-coding
1.22629-18	chr2	17981321	17981820	+	0	NA	Intergenic	Intergenic	-16216	NM_001105569	343930	Hs.705359	NM_001105569	ENSG00000151379	MSGN1	MSOG|pMsgn1	mesogenin 1	protein-coding
16.4397-2	chr6	3380843	3381342	+	0	NA	intron (NM_001286456, intron 3 of 3)	MLT1I|LTR|ERVL-MaLR	64155	NM_021945	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
1.63043-2	chr2	15777272	15777771	+	0	NA	Intergenic	Intergenic	45776	NM_004939	1653	Hs.440599	NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
0.376307-29	chr14	107198631	107199130	+	0	NA	Intergenic	Intergenic	60334	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
1.93142-8	chr11	75861739	75862238	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	55586	NM_004626	7481	Hs.108219	NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
0.614803-8	chr6	151560895	151561394	+	0	NA	promoter-TSS (NM_005100)	promoter-TSS (NM_005100)	10	NM_005100	9590	Hs.371240	NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
3.32547-11	chr7	67590148	67590647	+	0	NA	Intergenic	LTR33B|LTR|ERVL	105157	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
0.467237-15	chr16	31099881	31100380	+	0	NA	promoter-TSS (NM_001039503)	promoter-TSS (NM_001039503)	0	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	protease, serine 53	protein-coding
17.3518-2	chr8	22274179	22274678	+	0	NA	intron (NM_001135153, intron 7 of 8)	MIR|SINE|MIR	-24055	NM_001243975	5533	Hs.731683	NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
3.9794-20	chr18	32556741	32557240	+	0	NA	promoter-TSS (NM_001143826)	promoter-TSS (NM_001143826)	98	NM_001143826	10982	Hs.532824	NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
97.8516	chr2	13756666	13757165	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-609777	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
2.00659-16	chr17	61777801	61778300	+	0	NA	promoter-TSS (NM_030576)	promoter-TSS (NM_030576)	352	NR_046273	729683	Hs.534931	NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
16.038-3	chr18	72125069	72125568	+	0	NA	promoter-TSS (NM_001044369)	promoter-TSS (NM_001044369)	-815	NM_001044369	125704	Hs.371690	NM_001044369	ENSG00000187773	FAM69C	C18orf51	family with sequence similarity 69 member C	protein-coding
5.71865-6	chr8	74757511	74758010	+	0	NA	intron (NM_018299, intron 1 of 5)	SVA_B|Other|Other	33385	NR_073120	55284	Hs.128841	NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
1.50581-25	chr9	94186670	94187543	+	0	NA	promoter-TSS (NM_001289999)	promoter-TSS (NM_001289999)	-198	NM_001290000	4783	Hs.79334	NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
1.35489-20	chr6	157008103	157008602	+	0	NA	Intergenic	CpG	-90637	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
0.33389-5	chr2	180614611	180615110	+	0	NA	intron (NM_152520, intron 3 of 9)	intron (NM_152520, intron 3 of 9)	-4091	NM_001113397	151126	Hs.655005	NM_152520	ENSG00000144331	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
3.41035-5	chr8	62664434	62664933	+	0	NA	Intergenic	SVA_F|Other|Other	37336	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
2.05512-15	chr14	68161360	68161859	+	0	NA	intron (NM_016026, intron 1 of 6)	intron (NM_016026, intron 1 of 6)	901	NM_001252650	51109	Hs.719925	NM_016026	ENSG00000072042	RDH11	ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1	retinol dehydrogenase 11 (all-trans/9-cis/11-cis)	protein-coding
9.0309-7	chr8	139785624	139786123	+	0	NA	intron (NM_152888, intron 16 of 64)	intron (NM_152888, intron 16 of 64)	140376	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
17.167-6	chr20	46586637	46587136	+	0	NA	Intergenic	Intergenic	-25084	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
0.0174066-12	chr3	38691021	38691520	+	0	NA	promoter-TSS (NM_000335)	promoter-TSS (NM_000335)	-106	NM_001160160	6331	Hs.517898	NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
0.268721-22	chr16	48404824	48405323	+	0	NA	intron (NM_003031, intron 1 of 1)	FAM|SINE|Alu	-5289	NM_001006610	6477	Hs.706828	NM_003031	ENSG00000196470	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
4.46117	chr16	4845307	4845806	+	0	NA	intron (NM_001253794, intron 1 of 3)	intron (NM_001253794, intron 1 of 3)	177	NM_001253793	440335	Hs.390599	NM_001253790	ENSG00000267795	SMIM22	-	small integral membrane protein 22	protein-coding
1.53045-19	chr12	104680700	104681199	+	0	NA	5' UTR (NM_001261445, exon 1 of 15)	5' UTR (NM_001261445, exon 1 of 15)	489	NM_182743	7296	Hs.654922	NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
4.12289-7	chr12	2903839	2904338	+	0	NA	promoter-TSS (NM_002014)	promoter-TSS (NM_002014)	-20	NM_002014	2288	Hs.524183	NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FK506 binding protein 4	protein-coding
0.840728-5	chr9	130860791	130861290	+	0	NA	non-coding (NR_049766, exon 1 of 10)	non-coding (NR_049766, exon 1 of 10)	279	NR_049766	114789	Hs.5476	NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2	solute carrier family 25 member 25	protein-coding
0.00434512-42	chr8	109653443	109653942	+	0	NA	intron (NR_136411, intron 2 of 3)	intron (NR_136411, intron 2 of 3)	146152	NR_136411	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
3.8405-4	chr5	474612	475111	+	0	NA	intron (NR_125375, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	1510	NR_125375	100288152	Hs.535801	NR_125375		LOC100288152	-	uncharacterized LOC100288152	ncRNA
13.9041	chr11	92954616	92955115	+	0	NA	Intergenic	Intergenic	-23724	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
9.0309-9	chr9	29435788	29436287	+	0	NA	Intergenic	Intergenic	-223039	NM_001258282	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
6.05548-4	chr10	102499422	102499921	+	0	NA	intron (NM_001304569, intron 1 of 10)	intron (NM_001304569, intron 1 of 10)	4205	NM_001304569	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS	paired box 2	protein-coding
25.1856-5	chr16	78585437	78585936	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	452376	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
0.136762-18	chr14	45605453	45605952	+	0	NA	exon (NM_001308134, exon 1 of 11)	exon (NM_001308134, exon 1 of 11)	560	NM_020937	57697	Hs.509229	NM_020937	ENSG00000187790	FANCM	FAAP250|KIAA1596	Fanconi anemia complementation group M	protein-coding
1.51195-23	chr7	150780347	150780846	+	0	NA	promoter-TSS (NM_031434)	promoter-TSS (NM_031434)	24	NM_001136044	83590	Hs.726215	NM_031434	ENSG00000164897	TMUB1	C7orf21|DULP|SB144	transmembrane and ubiquitin like domain containing 1	protein-coding
0.574959-20	chr7	79763841	79764340	+	0	NA	promoter-TSS (NM_001256414)	promoter-TSS (NM_001256414)	-50	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
0.00434512-46	chr8	87570310	87570809	+	0	NA	exon (NM_003909, exon 17 of 17)	exon (NM_003909, exon 17 of 17)	43903	NM_003909	8895	Hs.191219	NM_003909	ENSG00000085719	CPNE3	CPN3|PRO1071	copine 3	protein-coding
21.0568	chr8	17328603	17329102	+	0	NA	Intergenic	Intergenic	-25745	NM_001008539	6542	Hs.448520	NM_003046	ENSG00000003989	SLC7A2	ATRC2|CAT2|HCAT2	solute carrier family 7 member 2	protein-coding
2.94992-5	chr12	12419980	12420479	+	0	NA	promoter-TSS (NM_002336)	promoter-TSS (NM_002336)	-418	NM_002336	4040	Hs.584775	NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding
10.5012-2	chr17	39942041	39942540	+	0	NA	intron (NM_021991, intron 1 of 14)	CpG	674	NM_021991	3728	Hs.514174	NM_002230	ENSG00000173801	JUP	ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB	junction plakoglobin	protein-coding
0.75204-9	chr12	108522850	108523349	+	0	NA	promoter-TSS (NM_014653)	promoter-TSS (NM_014653)	-149	NM_014653	9671	Hs.143591	NM_014653	ENSG00000075035	WSCD2	-	WSC domain containing 2	protein-coding
4.46117-8	chr6	34856692	34857191	+	0	NA	promoter-TSS (NM_015245)	promoter-TSS (NM_015245)	-97	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
5.48214-8	chr9	131446558	131447057	+	0	NA	promoter-TSS (NM_001248000)	promoter-TSS (NM_001248000)	-558	NM_001248000	6418	Hs.436687	NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
10.9313-2	chr10	75670671	75671170	+	0	NA	promoter-TSS (NM_001145031)	promoter-TSS (NM_001145031)	61	NM_001145031	5328	Hs.77274	NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
9.87163-21	chr1	40847204	40847703	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	7148	NM_001198978	64744	Hs.15200	NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
4.27128-18	chr5	60576581	60577080	+	0	NA	Intergenic	Intergenic	-51270	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	AFND	zinc finger SWIM-type containing 6	protein-coding
0.0656377-18	chr11	19764173	19764672	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	17207	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
0.319843-7	chr7	152038434	152038933	+	0	NA	intron (NM_170606, intron 2 of 58)	MLT1I|LTR|ERVL-MaLR	94407	NM_170606	58508	Hs.647120	NM_021230	ENSG00000055609	KMT2C	HALR|MLL3	lysine methyltransferase 2C	protein-coding
1.31944-21	chr4	84863944	84864443	+	0	NA	Intergenic	SVA_D|Other|Other	356129	NR_125909	101928978	Hs.647977	NR_125909	ENSG00000250546	LOC101928978	-	uncharacterized LOC101928978	ncRNA
0.199966-5	chr3	183145939	183146438	+	0	NA	promoter-TSS (NM_015078)	promoter-TSS (NM_015078)	-131	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
4.41291-8	chr5	1685166	1685665	+	0	NA	Intergenic	Intergenic	23568	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	ncRNA
16.9037-2	chrX	49697429	49697928	+	0	NA	intron (NM_001127899, intron 3 of 14)	intron (NM_001127899, intron 3 of 14)	10453	NM_001272102	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
5.85027-16	chr4	83132129	83132628	+	0	NA	Intergenic	Intergenic	162771	NM_031369	3184	Hs.480073	NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
8.60121-15	chr11	20133883	20134382	+	0	NA	intron (NM_001111019, intron 26 of 27)	intron (NM_001111019, intron 26 of 27)	47738	NM_001029865	120237	Hs.558604	NM_001029865	ENSG00000109851	DBX1	-	developing brain homeobox 1	protein-coding
1.06238-8	chr9	102790324	102790823	+	0	NA	intron (NM_015051, intron 4 of 11)	intron (NM_015051, intron 4 of 11)	70761	NM_015051	23071	Hs.154023	NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
1.28427-10	chrX	46434297	46434796	+	0	NA	exon (NM_019886, exon 1 of 2)	exon (NM_019886, exon 1 of 2)	1424	NM_019886	56548	Hs.129955	NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
0.419142-6	chr2	232316599	232317098	+	0	NA	Intergenic	Intergenic	3799	NR_002921	654321	Hs.674388	NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
1.21478-19	chr2	10243276	10243775	+	0	NA	Intergenic	L2a|LINE|L2	-19170	NM_001165931	6241	Hs.226390	NM_001034	ENSG00000171848	RRM2	R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
0.118872-41	chr8	558676	559175	+	0	NA	Intergenic	Intergenic	-63144	NM_175075	157695	Hs.289293	NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
2.18963-26	chr15	85053336	85053835	+	0	NA	non-coding (NR_003246, exon 9 of 10)	non-coding (NR_003246, exon 9 of 10)	6493	NR_003246	374650	Hs.454625	NM_198079		GOLGA6L5P	GOLGA6L5|GOLGA6L8	golgin A6 family-like 5, pseudogene	pseudo
0.851282-18	chr7	36237066	36237565	+	0	NA	intron (NM_030636, intron 2 of 7)	SVA_D|Other|Other	44479	NM_030636	80820	Hs.487994	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
4.35334	chr6	3227973	3228472	+	0	NA	promoter-TSS (NM_178012)	promoter-TSS (NM_178012)	-254	NM_178012	347733	Hs.300701	NM_178012	ENSG00000137285	TUBB2B	PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
1.91114-7	chr11	75657549	75658048	+	0	NA	intron (NM_003369, intron 6 of 14)	MLT1E3|LTR|ERVL-MaLR	131586	NM_003369	7405	Hs.202470	NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
0.409586-17	chr7	67711139	67711638	+	0	NA	Intergenic	Intergenic	226148	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
0.560111-5	chr12	49659089	49659588	+	0	NA	intron (NM_032704, intron 1 of 3)	intron (NM_032704, intron 1 of 3)	556	NM_032704	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
4.28291-9	chr7	99005374	99005873	+	0	NA	promoter-TSS (NM_003910)	promoter-TSS (NM_003910)	682	NM_014891	11333	Hs.632296	NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
18.4466-5	chr12	56111400	56111899	+	0	NA	intron (NM_001487, intron 2 of 3)	intron (NM_001487, intron 2 of 3)	1573	NR_037657	2647	Hs.94672	NM_001487	ENSG00000135441	BLOC1S1	BLOS1|BORCS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex 1 subunit 1	protein-coding
11.549-5	chr1	77267228	77267727	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-65616	NM_001320273	81849	Hs.149201	NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
3.31614-11	chr1	219740587	219741086	+	0	NA	Intergenic	Intergenic	-10170	NR_135822	102723886	Hs.525963	NR_135822		LOC102723886	-	uncharacterized LOC102723886	ncRNA
0.2365-20	chr9	136857372	136857871	+	0	NA	promoter-TSS (NM_003371)	promoter-TSS (NM_003371)	-175	NM_003371	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
2.43364-19	chr8	38270620	38271119	+	0	NA	3' UTR (NM_015850, exon 18 of 18)	3' UTR (NM_015850, exon 18 of 18)	26220	NM_001199660	137994	Hs.696457	NM_144652	ENSG00000165046	LETM2	-	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
1.85087	chr22	28415939	28416438	+	0	NA	intron (NM_001145418, intron 13 of 22)	intron (NM_001145418, intron 13 of 22)	-99588	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA
4.7237-12	chr11	4832312	4832811	+	0	NA	Intergenic	L1PA15|LINE|L1	-6951	NM_001005177	119695	Hs.553563	NM_001005177	ENSG00000279270	OR52R1	OR11-22	olfactory receptor family 52 subfamily R member 1 (gene/pseudogene)	protein-coding
7.9588-18	chr4	125447746	125448245	+	0	NA	intron (NR_110838, intron 5 of 8)	intron (NR_110838, intron 5 of 8)	31594	NR_110838	101927087	Hs.518966	NR_110838	ENSG00000261083	LOC101927087	-	uncharacterized LOC101927087	ncRNA
3.22393-10	chr22	50578185	50578684	+	0	NA	intron (NM_001164105, intron 15 of 25)	L1ME1|LINE|L1	-7050	NM_001164106	54456	Hs.62880	NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	Mov10 RISC complex RNA helicase like 1	protein-coding
0.385789-7	chr7	2394152	2394651	+	0	NA	promoter-TSS (NM_003751)	promoter-TSS (NM_003751)	-73	NM_001037283	8662	Hs.371001	NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
18.0688-5	chr9	100864173	100864672	+	0	NA	intron (NM_014788, intron 2 of 5)	MER83C|LTR|ERV1	17213	NM_033219	9830	Hs.575631	NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
32.1968-2	chr17	29842124	29842623	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-19528	NR_039877	100616248		NR_039877	ENSG00000131242	MIR4724	mir-4724	microRNA 4724	ncRNA
1.31944-23	chr17	75447312	75447811	+	0	NA	5' UTR (NM_001293697, exon 1 of 10)	5' UTR (NM_001293697, exon 1 of 10)	235	NM_001293697	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
0.172766-14	chr1	243419709	243420208	+	0	NA	intron (NM_006642, intron 1 of 17)	intron (NM_006642, intron 1 of 17)	651	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|HSPC085|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
0.609802-26	chr15	46570593	46571092	+	0	NA	Intergenic	Intergenic	573449	NR_135680	105370802	Hs.447522	NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
2.62013-16	chr18	42937958	42938457	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	145260	NM_001242692	8170	Hs.710927	NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
0.0392635-35	chr11	126057023	126057522	+	0	NA	Intergenic	Intergenic	24315	NM_001144827	84881	Hs.150458	NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
1.15771-5	chr9	99994341	99994840	+	0	NA	intron (NR_136286, intron 1 of 17)	LTR5_Hs|LTR|ERVK	-6118	NR_036529	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
0.371573-25	chr22	17739024	17739523	+	0	NA	intron (NR_038398, intron 2 of 2)	intron (NR_038398, intron 2 of 2)	8350	NR_038398	27442	Hs.517394	NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3 (non-protein coding)	ncRNA
0.695604-10	chr11	128700954	128701453	+	0	NA	Intergenic	Intergenic	11226	NM_000220	3758	Hs.527830	NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium voltage-gated channel subfamily J member 1	protein-coding
13.7366	chr8	134202113	134202612	+	0	NA	promoter-TSS (NM_080838)	promoter-TSS (NM_080838)	-920	NM_001204870	8840	Hs.492974	NM_003882	ENSG00000104415	WISP1	CCN4|WISP1c|WISP1i|WISP1tc	WNT1 inducible signaling pathway protein 1	protein-coding
1.33122-34	chr11	57228299	57228798	+	0	NA	intron (NM_178570, intron 1 of 2)	CpG-4141	538	NM_178570	349667	Hs.502618	NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor-like 2	protein-coding
11.4569	chr11	113425223	113425722	+	0	NA	Intergenic	LTR9|LTR|ERV1	-79471	NM_016574	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
6.03801-5	chr19	45310262	45310761	+	0	NA	Intergenic	Intergenic	-1805	NM_001013257	4059	Hs.625725	NM_005581	ENSG00000187244	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
0.599818-10	chr15	90808956	90809455	+	0	NA	promoter-TSS (NR_102428)	promoter-TSS (NR_102428)	-214	NR_102428	10519	Hs.715556	NM_006384	ENSG00000185043	CIB1	CIB|CIBP|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
1.21478-14	chr14	107154854	107155353	+	0	NA	Intergenic	Intergenic	62387	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
0.788339-14	chr7	150064915	150066063	+	0	NA	promoter-TSS (NM_001099695)	promoter-TSS (NM_001099695)	-390	NM_013400	29803	Hs.647086	NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
3.8934-13	chr1	117602817	117603316	+	0	NA	promoter-TSS (NR_110786)	promoter-TSS (NR_110786)	117	NM_003594	8458	Hs.32333	NM_003594	ENSG00000116830	TTF2	HuF2|ZGRF6	transcription termination factor 2	protein-coding
2.98432-8	chr16	85343077	85343926	+	0	NA	Intergenic	Intergenic	-3570	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
8.50781-14	chr13	74880629	74881128	+	0	NA	Intergenic	Intergenic	75297	NR_144451	100507612	Hs.447508	NR_144451		LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
5.30178-2	chr11	13365616	13366115	+	0	NA	intron (NM_001297719, intron 3 of 19)	MER91B|DNA|hAT-Tip100	66591	NM_001178	406	Hs.65734	NM_001178	ENSG00000133794	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator like	protein-coding
5.95166-11	chr5	98685520	98686019	+	0	NA	Intergenic	Intergenic	-183925	NR_110562	102724855	Hs.519477	NR_110562		LINC02113	CTD-2151A2.1	long intergenic non-protein coding RNA 2113	ncRNA
3.19664	chr10	104159092	104159591	+	0	NA	exon (NM_001288724, exon 14 of 23)	exon (NM_001288724, exon 14 of 23)	3988	NM_001322934	4791	Hs.73090	NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
8.63279-5	chr17	65578677	65579176	+	0	NA	intron (NM_181671, intron 5 of 9)	intron (NM_181671, intron 5 of 9)	-111225	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
3.63512-4	chr20	62099784	62100283	+	0	NA	intron (NM_172107, intron 1 of 16)	intron (NM_172107, intron 1 of 16)	3997	NM_172107	3785	Hs.161851	NM_004518	ENSG00000075043	KCNQ2	BFNC|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
18.8941-3	chr2	40470689	40471188	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	186506	NM_001112800	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
0.366845-7	chr13	95953810	95954309	+	0	NA	promoter-TSS (NM_001301830)	promoter-TSS (NM_001301830)	-359	NM_005845	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
0.525663	chr22	43010378	43010877	+	0	NA	promoter-TSS (NR_029422)	promoter-TSS (NR_029422)	341	NR_103820	84271	Hs.505802	NM_032311	ENSG00000100227	POLDIP3	PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
3.25139-3	chr6	88410005	88410504	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	1731	NM_018064	55122	Hs.485915	NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
0.209071-28	chr1	86046837	86047336	+	0	NA	exon (NM_001554, exon 2 of 5)	exon (NM_001554, exon 2 of 5)	642	NM_001554	3491	Hs.8867	NM_001554	ENSG00000142871	CYR61	CCN1|GIG1|IGFBP10	cysteine rich angiogenic inducer 61	protein-coding
1.49967-14	chr14	32556640	32557139	+	0	NA	intron (NM_001173, intron 1 of 6)	intron (NM_001173, intron 1 of 6)	10394	NM_001030055	394	Hs.592313	NM_001173	ENSG00000100852	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
0.0877392-29	chr14	80679795	80680294	+	0	NA	intron (NM_000793, intron 2 of 3)	MER91C|DNA|hAT-Tip100	-1519	NM_001324462	1734	Hs.202354	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding
0.277972-9	chr20	290513	291012	+	0	NA	Intergenic	Intergenic	12558	NM_033089	85364	Hs.28608	NM_033089	ENSG00000247315	ZCCHC3	C20orf99	zinc finger CCHC-type containing 3	protein-coding
0.254883-21	chr8	29630856	29631355	+	0	NA	intron (NR_125814, intron 1 of 3)	intron (NR_125814, intron 1 of 3)	25280	NR_125816	101929450	Hs.512440	NR_125814	ENSG00000253490	LINC02099	-	long intergenic non-protein coding RNA 2099	ncRNA
4.19075-10	chr10	112326870	112327369	+	0	NA	promoter-TSS (NM_005445)	promoter-TSS (NM_005445)	-330	NM_005445	9126	Hs.24485	NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
3.61511-5	chr4	113739021	113739520	+	0	NA	promoter-TSS (NM_001127493)	promoter-TSS (NM_001127493)	31	NM_001127493	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
8.9279-11	chr8	11725322	11725821	+	0	NA	promoter-TSS (NM_147780)	promoter-TSS (NM_147780)	88	NM_147783	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
24.6597	chr3	150469628	150470127	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	11386	NM_005067	6478	Hs.477959	NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
5.83359-27	chr4	25235278	25235777	+	0	NA	promoter-TSS (NM_018323)	promoter-TSS (NM_018323)	-126	NR_144633	55300	Hs.191701	NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
3.09804-3	chr7	4814902	4815401	+	0	NA	promoter-TSS (NM_014855)	promoter-TSS (NM_014855)	-111	NM_014855	9907	Hs.558440	NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 zeta 1 subunit	protein-coding
0.0130484-32	chr11	75012552	75013051	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	33429	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
27.2816	chr1	30351361	30351860	+	0	NA	Intergenic	Intergenic	158849	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
0.0744648-38	chrX	12719666	12720165	+	0	NA	intron (NM_014728, intron 9 of 16)	intron (NM_014728, intron 9 of 16)	-89559	NM_001039091	5634	Hs.654581	NM_002765	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
16.5956	chr13	44942026	44942525	+	0	NA	Intergenic	X6B_LINE|LINE|CR1	-5511	NM_001346980	387923	Hs.377972	NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
3.9794-18	chr17	78976050	78976549	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	10658	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
4.27128-12	chr13	101326001	101326500	+	0	NA	intron (NM_032813, intron 1 of 18)	intron (NM_032813, intron 1 of 18)	939	NM_001286453	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
14.1117	chr1	210928196	210928695	+	0	NA	intron (NM_172362, intron 10 of 10)	intron (NM_172362, intron 10 of 10)	379012	NM_172362	3756	Hs.553187	NM_002238	ENSG00000143473	KCNH1	EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1	potassium voltage-gated channel subfamily H member 1	protein-coding
11.5927-5	chr20	35101107	35101606	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	11170	NM_183006	22839	Hs.249600	NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
0-3	chr20	50808218	50808717	+	0	NA	promoter-TSS (NM_199427)	promoter-TSS (NM_199427)	57	NM_018197	55734	Hs.473082	NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
11.1464-2	chr9	37562815	37563314	+	0	NA	intron (NM_012166, intron 1 of 10)	THE1D|LTR|ERVL-MaLR	13186	NM_012166	26267	Hs.709527	NM_012166	ENSG00000147912	FBXO10	FBX10|PRMT11	F-box protein 10	protein-coding
2.62807-6	chr5	157170727	157171226	+	0	NA	exon (NM_173491, exon 1 of 4)	exon (NM_173491, exon 1 of 4)	273	NM_173491	134353	Hs.23648	NM_173491	ENSG00000155858	LSM11	-	LSM11, U7 small nuclear RNA associated	protein-coding
1.04577-2	chr5	126545622	126546121	+	0	NA	Intergenic	Intergenic	-80585	NM_032446	84466	Hs.438709	NM_032446	ENSG00000145794	MEGF10	EMARDD	multiple EGF like domains 10	protein-coding
0.070049-71	chr11	63812382	63812881	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	-58731	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
1.6877-6	chr1	17992390	17992889	+	0	NA	intron (NM_001319838, intron 15 of 17)	MLT2B4|LTR|ERVL	47831	NM_001319838	55160	Hs.443460	NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding
1.62412-11	chr20	54933880	54934379	+	0	NA	exon (NM_080821, exon 1 of 3)	exon (NM_080821, exon 1 of 3)	146	NM_080821	116151	Hs.143736	NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
9.1364-24	chr5	20749364	20749863	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-173631	NM_001291956	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
1.35489-13	chr1	154810088	154810587	+	0	NA	intron (NM_002249, intron 1 of 7)	intron (NM_002249, intron 1 of 7)	22001	NM_170782	3782	Hs.490765	NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
1.00727-6	chrX	83443245	83443744	+	0	NA	promoter-TSS (NM_014496)	promoter-TSS (NM_014496)	-551	NM_001330512	27330	Hs.234478	NM_014496	ENSG00000072133	RPS6KA6	PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6	ribosomal protein S6 kinase A6	protein-coding
1.15771-19	chr7	133595503	133596002	+	0	NA	intron (NM_021807, intron 12 of 17)	intron (NM_021807, intron 12 of 17)	-86111	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
13.8091	chr16	19178927	19179426	+	0	NA	promoter-TSS (NM_016524)	promoter-TSS (NM_016524)	20	NM_001330509	51760	Hs.258326	NM_016524	ENSG00000103528	SYT17	sytXVII	synaptotagmin 17	protein-coding
82.4949	chr14	23466332	23466831	+	0	NA	intron (NM_021944, intron 2 of 6)	intron (NM_021944, intron 2 of 6)	3665	NM_001282969	60686	Hs.255874	NM_021944	ENSG00000100802	C14orf93	-	chromosome 14 open reading frame 93	protein-coding
33.6754	chr12	29090095	29090594	+	0	NA	Intergenic	Intergenic	-211592	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
31.6813	chr20	15740750	15741249	+	0	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	162960	NR_130925	613266	Hs.309149	NR_130924		LOC613266	-	uncharacterized LOC613266	ncRNA
1.94499-8	chr17	3537108	3537607	+	0	NA	intron (NM_013276, intron 1 of 6)	SVA_D|Other|Other	2259	NM_013276	23729	Hs.579217	NM_013276	ENSG00000197417	SHPK	CARKL|SHK	sedoheptulokinase	protein-coding
5.9176-3	chrX	14320183	14320682	+	0	NA	Intergenic	SVA_C|Other|Other	58045	NR_110506	286480	Hs.567831	NR_110506		UBE2E4P	UbcM2	ubiquitin conjugating enzyme E2 E4 pseudogene	pseudo
17.4958	chr13	102217604	102218103	+	0	NA	intron (NM_001271756, intron 1 of 9)	intron (NM_001271756, intron 1 of 9)	75550	NM_001271756	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
0.291884-21	chr13	85470158	85470657	+	0	NA	Intergenic	Intergenic	112618	NR_132852	106635542		NR_132852		SNORA107	-	small nucleolar RNA, H/ACA box 107	snoRNA
2.73273-4	chr3	77087510	77088009	+	0	NA	Intergenic	Intergenic	-1535	NM_002942	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
4.42493-8	chr12	21489493	21489992	+	0	NA	intron (NM_134431, intron 2 of 15)	intron (NM_134431, intron 2 of 15)	-1910	NM_021094	6579	Hs.46440	NM_005075	ENSG00000084453	SLCO1A2	OATP|OATP-A|OATP1A2|SLC21A3	solute carrier organic anion transporter family member 1A2	protein-coding
7.18967-5	chr6	26537430	26537929	+	0	NA	promoter-TSS (NM_006353)	promoter-TSS (NM_006353)	-893	NM_006353	10473	Hs.236774	NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
0.163737-8	chr14	24768509	24769008	+	0	NA	promoter-TSS (NM_138452)	promoter-TSS (NM_138452)	-92	NM_138452	115817	Hs.348350	NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
0.925886-5	chr5	177591066	177591565	+	0	NA	Intergenic	Intergenic	-10354	NM_001034833	55651	Hs.744074	NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
10.0436	chr13	98967642	98968141	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	107113	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
0.190881-19	chr11	29343195	29343694	+	0	NA	Intergenic	Intergenic	660496	NR_132652	106456574	Hs.128812	NR_132652	ENSG00000261340	LINC01616	n341006	long intergenic non-protein coding RNA 1616	ncRNA
1.12946-8	chr20	10332852	10333351	+	0	NA	Intergenic	LTR35|LTR|ERV1	79472	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
0.716041-2	chr6	107436384	107436883	+	0	NA	promoter-TSS (NM_001080450)	promoter-TSS (NM_001080450)	-997	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
0.649968	chr7	6362537	6363036	+	0	NA	Intergenic	Intergenic	25804	NM_001037163	84792	Hs.696146	NM_001037163	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
0.291884-27	chr9	43653676	43654175	+	0	NA	Intergenic	Intergenic	-23195	NM_001145196	389730	Hs.455299	NM_001145196	ENSG00000185775	SPATA31A6	FAM75A6	SPATA31 subfamily A member 6	protein-coding
15.2433	chr4	44188313	44188812	+	0	NA	intron (NM_198353, intron 1 of 1)	LTR1|LTR|ERV1	169483	NR_131958	100506827	Hs.156197	NR_131958	ENSG00000251350	LVCAT1	-	liver cancer-associated transcript 1	ncRNA
0.462403-13	chr21	34100317	34100816	+	0	NA	promoter-TSS (NM_003895)	promoter-TSS (NM_003895)	141	NR_038879	100506215	Hs.657123	NR_038879	ENSG00000238197	PAXBP1-AS1	GCFC1-AS1	PAXBP1 antisense RNA 1	ncRNA
3.23306-6	chr4	146102321	146102820	+	0	NA	Intergenic	Intergenic	-1738	NM_001102653	54726	Hs.270851	NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
0.8302-18	chr3	167747440	167747939	+	0	NA	exon (NM_001308155, exon 9 of 15)	exon (NM_001308155, exon 9 of 15)	66024	NM_001308155	27333	Hs.143600	NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
1.19186-13	chr15	41849893	41850392	+	0	NA	Intergenic	Intergenic	-1078	NM_006293	7301	Hs.381282	NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
4.14539-2	chr4	136139213	136139712	+	0	NA	Intergenic	Intergenic	669786	NR_103762	100507528	Hs.518987	NR_103762	ENSG00000248330	LINC00613	-	long intergenic non-protein coding RNA 613	ncRNA
0.231917-7	chr14	21571200	21571699	+	0	NA	3' UTR (NM_001146683, exon 8 of 8)	3' UTR (NM_001146683, exon 8 of 8)	1414	NM_001102454	51222	Hs.250493	NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
21.0403	chr3	29805503	29806002	+	0	NA	intron (NM_001003793, intron 6 of 14)	intron (NM_001003793, intron 6 of 14)	169895	NR_046556	100873977	Hs.581453	NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
3.58526-14	chr12	125565983	125566482	+	0	NA	intron (NM_023928, intron 3 of 17)	intron (NM_023928, intron 3 of 17)	16319	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
0.772745-2	chr1	145438101	145438600	+	0	NA	promoter-TSS (NM_006472)	promoter-TSS (NM_006472)	-88	NM_006472	10628	Hs.533977	NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
7.61954-5	chr2	98612346	98612845	+	0	NA	promoter-TSS (NM_015348)	promoter-TSS (NM_015348)	-241	NM_015348	23505	Hs.469376	NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
0.675262-15	chr7	63967	64466	+	0	NA	Intergenic	Intergenic	85222	NR_134325	102723672	Hs.605204	NR_134325		LOC102723672	-	uncharacterized LOC102723672	ncRNA
3.43902-11	chr17	3015092	3015591	+	0	NA	Intergenic	SVA_D|Other|Other	15504	NM_003555	8390	Hs.248183	NM_003555	ENSG00000183024	OR1G1	OR17-130|OR17-209|OR1G2	olfactory receptor family 1 subfamily G member 1	protein-coding
1.02373-18	chr3	148897756	148898255	+	0	NA	intron (NR_046371, intron 13 of 17)	intron (NR_046371, intron 13 of 17)	41827	NR_046371	1356	Hs.558314	NM_000096	ENSG00000047457	CP	CP-2	ceruloplasmin	protein-coding
0.540393-50	chr7	112758008	112758507	+	0	NA	intron (NR_015442, intron 1 of 2)	intron (NR_015442, intron 1 of 2)	380	NR_015442	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
3.83-6	chr14	93245173	93245672	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-15154	NM_005113	9950	Hs.104320	NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
10.8725	chr5	33513831	33514330	+	0	NA	Intergenic	Intergenic	73198	NM_152295	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
7.64472-16	chr7	16957209	16957708	+	0	NA	Intergenic	Intergenic	-35845	NM_176813	155465	Hs.100686	NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
2.26214-17	chr7	1755928	1756427	+	0	NA	intron (NM_001128636, intron 1 of 1)	intron (NM_001128636, intron 1 of 1)	7379	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
12.4795-2	chr3	68372177	68372676	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	-177362	NR_135532	105377146	Hs.567895	NR_135532		LOC105377146	-	uncharacterized LOC105377146	ncRNA
25.544-3	chr14	70749397	70749896	+	0	NA	Intergenic	Intergenic	-35128	NR_003951	145241	Hs.712468	NR_003951	ENSG00000235812	ADAM21P1	ADAM21P	ADAM metallopeptidase domain 21 pseudogene 1	pseudo
10.804-2	chr14	70335609	70336108	+	0	NA	Intergenic	L1PA16|LINE|L1	-10256	NM_022137	64093	Hs.497349	NM_022137	ENSG00000198732	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding
15.5129-2	chr7	119112439	119112938	+	0	NA	Intergenic	Intergenic	434741	NR_131961	105375475	Hs.566654	NR_131960	ENSG00000225546	LVCAT5	-	liver cancer-associated transcript 5	ncRNA
0.0744648-11	chr11	45126942	45127441	+	0	NA	intron (NR_046338, intron 2 of 7)	intron (NR_046338, intron 2 of 7)	11627	NR_046338	56981	Hs.178715	NM_020229	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
0.141246-24	chr7	157179755	157180254	+	0	NA	TTS (NM_005494)	TTS (NM_005494)	50293	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
2.30623-13	chr12	110718789	110719288	+	0	NA	promoter-TSS (NM_170665)	promoter-TSS (NM_170665)	6	NM_001681	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
1.72631-10	chr5	34241679	34242178	+	0	NA	Intergenic	AluJo|SINE|Alu	-117295	NR_037951	100534612	Hs.171929	NR_037951	ENSG00000273294	C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA
3.41035-22	chr2	63673194	63673693	+	0	NA	intron (NM_015910, intron 6 of 17)	MER1B|DNA|hAT-Charlie	-8302	NM_001042692	51057	Hs.414952	NM_015910	ENSG00000143951	WDPCP	BBS15|C2orf86|CHDTHP|FRITZ|FRTZ	WD repeat containing planar cell polarity effector	protein-coding
15.6864-2	chr9	2623260	2623759	+	0	NA	intron (NM_001018056, intron 1 of 17)	CpG	-1136	NR_015375	401491	Hs.416043	NR_015375	ENSG00000236404	VLDLR-AS1	linc-VLDLR|lincRNA-VLDLR	VLDLR antisense RNA 1	ncRNA
1.31944-20	chr15	46088644	46089143	+	0	NA	intron (NR_135680, intron 1 of 4)	LTR33|LTR|ERVL	91500	NR_135680	105370802	Hs.447522	NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
6.23423-9	chr9	96017111	96017610	+	0	NA	intron (NM_001282394, intron 8 of 29)	intron (NM_001282394, intron 8 of 29)	70148	NM_006648	65268	Hs.654856	NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
15.0307-3	chr1	75808406	75808905	+	0	NA	intron (NM_001320283, intron 1 of 21)	intron (NM_001320283, intron 1 of 21)	208088	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
0.888424-16	chr13	102068041	102068540	+	0	NA	intron (NM_052867, intron 1 of 43)	CpG	523	NM_052867	259232	Hs.525146	NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
12.0971-5	chr15	99408484	99408983	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	81078	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
10	chr9	8694999	8695498	+	0	NA	intron (NM_001040712, intron 1 of 29)	MLT1L|LTR|ERVL-MaLR	38698	NM_130393	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
4.14539-11	chr11	116558643	116559142	+	0	NA	Intergenic	Intergenic	48753	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
0.101054-7	chr3	159706589	159707088	+	0	NA	5' UTR (NM_000882, exon 1 of 7)	5' UTR (NM_000882, exon 1 of 7)	215	NM_000882	3592	Hs.673	NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
0.472076-30	chr6	125474634	125475133	+	0	NA	promoter-TSS (NM_001300994)	promoter-TSS (NM_001300994)	8	NM_003287	7164	Hs.591347	NM_003287	ENSG00000111907	TPD52L1	D53	tumor protein D52-like 1	protein-coding
0.329203-10	chr1	115053600	115054099	+	0	NA	promoter-TSS (NM_015906)	promoter-TSS (NM_015906)	-68	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
9.17215	chr6	18387352	18387851	+	0	NA	promoter-TSS (NM_182757)	promoter-TSS (NM_182757)	20	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
0.614803-9	chrX	47517929	47518428	+	0	NA	promoter-TSS (NR_028119)	promoter-TSS (NR_028119)	-54	NR_028119	100133957	Hs.546106	NR_027444	ENSG00000267064	UXT-AS1	-	UXT antisense RNA 1	ncRNA
32.1968	chr1	86969334	86969833	+	0	NA	Intergenic	Intergenic	35057	NM_001285	1179	Hs.194659	NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
9.06578-5	chr1	87666471	87666970	+	0	NA	Intergenic	Intergenic	-11632	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
17.167-7	chr5	141807478	141807977	+	0	NA	intron (NR_120664, intron 3 of 3)	LTR86A2|LTR|ERVL	102869	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	LOC101926941	-	uncharacterized LOC101926941	ncRNA
1.85087-10	chr1	41826629	41827128	+	0	NA	promoter-TSS (NM_001291281)	promoter-TSS (NM_001291281)	-725	NM_001291281	100132074	Hs.559677	NM_001291281		FOXO6	-	forkhead box O6	protein-coding
0.419142-20	chr3	184135579	184136078	+	0	NA	intron (NM_001322103, intron 1 of 3)	intron (NM_001322103, intron 1 of 3)	16503	NM_001322103	105374250	Hs.129464	NM_001322103		LINC02054	-	long intergenic non-protein coding RNA 2054	protein-coding
0.409586	chr17	38020213	38020712	+	0	NA	promoter-TSS (NM_001284514)	promoter-TSS (NM_001284514)	-21	NM_001257408	22806	Hs.371680	NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
15.5284-3	chr6	56234765	56235264	+	0	NA	intron (NM_001318752, intron 1 of 28)	intron (NM_001318752, intron 1 of 28)	23912	NM_001318752	81578	Hs.47629	NM_030820	ENSG00000124749	COL21A1	COLA1L|FP633	collagen type XXI alpha 1 chain	protein-coding
1.22629-27	chr1	15680643	15681142	+	0	NA	intron (NM_052929, intron 19 of 30)	L3|LINE|CR1	-55499	NM_024329	79180	Hs.465374	NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
7.07744	chr11	111600157	111600656	+	0	NA	intron (NM_181699, intron 15 of 15)	intron (NM_181699, intron 15 of 15)	36763	NM_001177562	5519	Hs.269128	NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
0.79355-25	chr8	124077707	124078206	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-6903	NM_001330606	93594	Hs.492716	NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
0.00869459-5	chr7	150940630	150941129	+	0	NA	intron (NM_001003801, intron 2 of 12)	intron (NM_001003801, intron 2 of 12)	4870	NM_001003801	6604	Hs.647067	NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
0.404816-5	chr4	162750686	162751185	+	0	NA	intron (NM_020116, intron 4 of 15)	intron (NM_020116, intron 4 of 15)	-192950	NR_125888	101928052	Hs.647993	NR_125888	ENSG00000249419	LOC101928052	-	uncharacterized LOC101928052	ncRNA
6.75718-4	chr2	110280211	110280710	+	0	NA	Intergenic	Intergenic	90774	NM_001321514	151011	Hs.469615	NM_144710	ENSG00000186522	SEPT10	-	septin 10	protein-coding
1.30768-4	chr1	117112873	117113372	+	0	NA	intron (NR_026665, intron 1 of 5)	CpG	593	NM_001779	965	Hs.34341	NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
1.22053-22	chr1	116916181	116916680	+	0	NA	promoter-TSS (NM_001160233)	promoter-TSS (NM_001160233)	-59	NM_001160233	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
5.37602-2	chr7	142508746	142509245	+	0	NA	Intergenic	Intergenic	30238	NR_001296	154754	Hs.449281	NR_001296		PRSS3P2	T6|TRY6	protease, serine 3 pseudogene 2	pseudo
2.16811-11	chr1	229556449	229556948	+	0	NA	Intergenic	Intergenic	13145	NM_001100	58	Hs.1288	NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM	actin, alpha 1, skeletal muscle	protein-coding
8.86057-5	chr7	73184711	73185210	+	0	NA	promoter-TSS (NM_001306)	promoter-TSS (NM_001306)	-360	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
12.1968-4	chr12	51765246	51765745	+	0	NA	intron (NM_007210, intron 4 of 11)	intron (NM_007210, intron 4 of 11)	-19606	NM_001267615	9498	Hs.4749	NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
1.53045-4	chr11	79150153	79150652	+	0	NA	intron (NM_001098816, intron 1 of 33)	CpG	1293	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4	teneurin transmembrane protein 4	protein-coding
13.5655-2	chr1	197430361	197430860	+	0	NA	intron (NR_047564, intron 11 of 11)	intron (NR_047564, intron 11 of 11)	193276	NM_201253	23418	Hs.126135	NM_012076	ENSG00000134376	CRB1	LCA8|RP12	crumbs 1, cell polarity complex component	protein-coding
5.81699-4	chr9	92300943	92301442	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	46494	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
2.99296-9	chr17	50707238	50707737	+	0	NA	Intergenic	L1PA16|LINE|L1	-355393	NM_001243552	100506650	Hs.146556	NM_001243552		C17orf112	-	chromosome 17 open reading frame 112	protein-coding
7.37549-4	chr15	32739306	32739805	+	0	NA	intron (NM_001277308, intron 13 of 18)	intron (NM_001277308, intron 13 of 18)	8280	NM_001277308	728047	Hs.525905	NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
1.86419-11	chr9	27427114	27427613	+	0	NA	intron (NM_024761, intron 2 of 3)	intron (NM_024761, intron 2 of 3)	-96949	NM_020124	56832	Hs.591083	NM_020124	ENSG00000147896	IFNK	IFNT1|INFE1	interferon kappa	protein-coding
3.81952-11	chr17	66259181	66259680	+	0	NA	intron (NM_014960, intron 1 of 11)	intron (NM_014960, intron 1 of 11)	4107	NM_014960	22901	Hs.437249	NM_014960	ENSG00000141337	ARSG	-	arylsulfatase G	protein-coding
3.8405-18	chr7	45030304	45030803	+	0	NA	Intergenic	MER61D|LTR|ERV1	-4294	NR_003697	285958	Hs.25892	NR_003697	ENSG00000232956	SNHG15	C7orf40|Linc-Myo1g|MYO1GUT	small nucleolar RNA host gene 15	ncRNA
0.209071-31	chr10	38645501	38646000	+	0	NA	intron (NR_003086, intron 1 of 7)	intron (NR_003086, intron 1 of 7)	442	NR_003086	158160	Hs.652484	NM_182829	ENSG00000099251	HSD17B7P2	HSD17B7|Hsd17b_2|bA291L22.1	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	pseudo
9.1364-11	chr20	5149606	5150105	+	0	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	42448	NM_003818	8760	Hs.126857	NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
1.26098-8	chr15	34729750	34730249	+	0	NA	promoter-TSS (NR_027409)	promoter-TSS (NR_027409)	-332	NR_027409	23015	Hs.182982	NM_181077	ENSG00000175265	GOLGA8A	GM88	golgin A8 family member A	protein-coding
0.599818-26	chr16	1458102	1458601	+	0	NA	intron (NM_001037125, intron 2 of 5)	CpG	6370	NM_001193388	64718	Hs.643536	NM_023076	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unkempt family like zinc finger	protein-coding
2.10419-4	chr6	101329014	101329513	+	0	NA	promoter-TSS (NM_006828)	promoter-TSS (NM_006828)	-15	NM_022091	10973	Hs.486031	NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
2.19683-2	chr8	30584656	30585155	+	0	NA	intron (NM_000637, intron 1 of 12)	CpG	581	NM_001195102	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
1.01824	chr3	186544394	186544893	+	0	NA	Intergenic	Intergenic	-1333	NR_125409	102724699	Hs.518476	NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
1.03474-3	chr6	13486385	13486884	+	0	NA	promoter-TSS (NM_001242628)	promoter-TSS (NM_001242628)	-219	NM_001242628	54438	Hs.484686	NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
1.33713-8	chr1	967783	968282	+	0	NA	intron (NM_198576, intron 2 of 35)	CpG	12529	NM_198576	375790	Hs.273330	NM_198576	ENSG00000188157	AGRN	CMS8|CMSPPD	agrin	protein-coding
4.76254-9	chr17	60555800	60556299	+	0	NA	promoter-TSS (NM_001330418)	promoter-TSS (NM_001330418)	-80	NM_001330418	11011	Hs.445078	NM_006852	ENSG00000146872	TLK2	HsHPK|PKU-ALPHA	tousled like kinase 2	protein-coding
0.467237-26	chr7	44162711	44163210	+	0	NA	5' UTR (NM_001256879, exon 1 of 12)	5' UTR (NM_001256879, exon 1 of 12)	147	NM_001256879	5425	Hs.306791	NM_006230	ENSG00000106628	POLD2	-	DNA polymerase delta 2, accessory subunit	protein-coding
7.79892-7	chr12	80085802	80086301	+	0	NA	Intergenic	Intergenic	-1261	NM_002583	5074	Hs.643130	NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding
16.9037	chr8	62508186	62508685	+	0	NA	intron (NM_004318, intron 14 of 24)	L1M2|LINE|L1	93973	NM_001164753	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
16.0906-2	chr11	15939684	15940183	+	0	NA	Intergenic	Intergenic	51234	NR_106721	102464826		NR_106721	ENSG00000110693	MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
0.231917-21	chr2	12351865	12352364	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	12858	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
2.11125-2	chr16	83937237	83937736	+	0	NA	intron (NM_012213, intron 1 of 4)	intron (NM_012213, intron 1 of 4)	4756	NM_012213	23417	Hs.644610	NM_012213	ENSG00000103150	MLYCD	MCD	malonyl-CoA decarboxylase	protein-coding
5.0307-9	chr12	101099736	101100235	+	0	NA	Intergenic	Intergenic	-88389	NM_178826	121601	Hs.58785	NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
2.41845-7	chrX	129252348	129252847	+	0	NA	Intergenic	Intergenic	-7909	NM_001127197	2000	Hs.271940	NM_001421	ENSG00000102034	ELF4	ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
0.0524306-22	chr22	17849319	17850129	+	0	NA	intron (NM_001290046, intron 1 of 18)	CpG	8885	NM_001290046	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	CECR2, histone acetyl-lysine reader	protein-coding
7.61954-7	chr4	1722411	1722910	+	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	424	NM_138385	92305	Hs.518562	NM_138385	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
11.349	chr2	66532833	66533332	+	0	NA	Intergenic	Intergenic	52378	NR_039938	100616464		NR_039938	ENSG00000264525	MIR4778	-	microRNA 4778	ncRNA
2.8567-6	chr1	236296650	236297149	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-8933	NM_003272	7107	Hs.498160	NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
2.44888-3	chr6	130339414	130339913	+	0	NA	promoter-TSS (NM_001346551)	promoter-TSS (NM_001346551)	149	NM_001007102	84456	Hs.658051	NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	l(3)mbt-like 3 (Drosophila)	protein-coding
0.150229-7	chr1	161420237	161420736	+	0	NA	Intergenic	CpG	-54719	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
1.75224-9	chr20	25604401	25604900	+	0	NA	promoter-TSS (NR_126467)	promoter-TSS (NR_126467)	-2	NM_152667	140838	Hs.143137	NM_152667	ENSG00000170191	NANP	C20orf147|HDHD4|dJ694B14.3	N-acetylneuraminic acid phosphatase	protein-coding
1.6877-9	chr8	109902490	109902989	+	0	NA	Intergenic	Intergenic	-102895	NM_153015	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
0.315171-13	chr16	11391392	11391891	+	0	NA	Intergenic	Intergenic	-16449	NM_002761	5619	Hs.2909	NM_002761	ENSG00000175646	PRM1	CT94.1|P1	protamine 1	protein-coding
2.30623-23	chr1	39657189	39657688	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	107599	NM_012090	23499	Hs.472475	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
21.2668	chr9	92302028	92302527	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	47579	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
7.37549-15	chrX	48082211	48082710	+	0	NA	Intergenic	SVA_D|Other|Other	-26261	NM_175723	6758	Hs.166198	NM_021015	ENSG00000165583	SSX5	-	SSX family member 5	protein-coding
31.2901	chr7	92111015	92111514	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	34502	NR_052016	57798	Hs.21145	NM_021167	ENSG00000157259	GATAD1	CMD2B|ODAG|RG083M05.2	GATA zinc finger domain containing 1	protein-coding
36.038	chr12	81085763	81086262	+	0	NA	Intergenic	Intergenic	-15396	NM_002469	4618	Hs.35937	NM_002469	ENSG00000111046	MYF6	CNM3|MRF4|bHLHc4|myf-6	myogenic factor 6	protein-coding
0.273344-11	chr16	19890665	19891164	+	0	NA	intron (NM_001304771, intron 1 of 3)	intron (NM_001304771, intron 1 of 3)	5319	NM_016235	51704	Hs.148685	NM_016235	ENSG00000167191	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
4.49772-10	chr7	101513930	101514429	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	53297	NM_181552	1523	Hs.191482	NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
0.00434512-8	chr5	154061942	154062441	+	0	NA	Intergenic	Intergenic	-3145	NR_031638	100302284		NR_031638	ENSG00000221552	MIR1303	MIRN1303|hsa-mir-1303	microRNA 1303	ncRNA
6.92504-6	chr16	21524660	21525159	+	0	NA	Intergenic	Intergenic	6856	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
0.231917-31	chr16	81595916	81596415	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	28658	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
2.30623-18	chr2	173600721	173601220	+	0	NA	promoter-TSS (NR_026995)	promoter-TSS (NR_026995)	-36	NR_026995	91149	Hs.711021	NR_026995	ENSG00000228016	RAPGEF4-AS1	-	RAPGEF4 antisense RNA 1	ncRNA
1.58015-4	chr12	109028202	109028701	+	0	NA	promoter-TSS (NM_003006)	promoter-TSS (NM_003006)	-781	NM_003006	6404	Hs.591014	NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
8.26814-30	chr12	118540907	118541406	+	0	NA	intron (NM_019086, intron 1 of 8)	CpG	654	NM_019086	54621	Hs.187624	NM_019086	ENSG00000176834	VSIG10	-	V-set and immunoglobulin domain containing 10	protein-coding
3.93619-5	chr20	3780114	3780613	+	0	NA	promoter-TSS (NM_001287524)	promoter-TSS (NM_001287524)	-346	NM_001287524	994	Hs.153752	NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
0.254883-3	chr15	32828114	32828613	+	0	NA	promoter-TSS (NR_102756)	promoter-TSS (NR_102756)	-597	NR_102756	100996255	Hs.634408	NR_102756		LOC100996255	-	uncharacterized LOC100996255	ncRNA
0.746879-2	chr4	162241471	162241970	+	0	NA	Intergenic	MER70-int|LTR|ERVL	-702165	NR_125888	101928052	Hs.647993	NR_125888	ENSG00000249419	LOC101928052	-	uncharacterized LOC101928052	ncRNA
37.7989-3	chr18	69567213	69567712	+	0	NA	Intergenic	L1PA16|LINE|L1	-118000	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
10.7366	chr10	89102094	89102593	+	0	NA	promoter-TSS (NR_024397)	promoter-TSS (NR_024397)	-28	NR_024397	728190	Hs.440648	NR_024397	ENSG00000223482	NUTM2A-AS1	FAM22A-AS1	NUTM2A antisense RNA 1	ncRNA
0.296531-78	chr6	16849671	16850170	+	0	NA	Intergenic	Intergenic	-88199	NM_001128164	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
12.4185-2	chr20	10374900	10375399	+	0	NA	Intergenic	SVA_C|Other|Other	37424	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
0.190881-18	chrX	16900862	16901361	+	0	NA	Intergenic	Intergenic	-12577	NM_002893	5931	Hs.495755	NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
0.555173-4	chr4	25439462	25439961	+	0	NA	Intergenic	Intergenic	60863	NM_001286756	29945	Hs.152173	NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
21.7198	chr3	16883272	16883771	+	0	NA	Intergenic	Intergenic	-42931	NM_001144382	23228	Hs.202010	NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
3.12471-2	chr16	31191825	31192324	+	0	NA	intron (NM_001170634, intron 1 of 14)	CpG	643	NM_004960	2521	Hs.46894	NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS	FUS RNA binding protein	protein-coding
0.584886-20	chr3	23987189	23987688	+	0	NA	promoter-TSS (NM_001145425)	promoter-TSS (NM_001145425)	-174	NM_001145425	9975	Hs.37288	NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
5.04456-7	chr2	233304068	233304567	+	0	NA	Intergenic	Intergenic	-16505	NM_001631	248	Hs.37009	NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
49.8297-2	chr3	8638268	8638767	+	0	NA	Intergenic	Intergenic	25049	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312	long intergenic non-protein coding RNA 312	ncRNA
0.168249-18	chr20	48986055	48986554	+	0	NA	Intergenic	Intergenic	-48425	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
5.78396-13	chr6	111862175	111862674	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	26139	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
10.1818	chr4	114604208	114604707	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	78626	NM_001321570	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
2.18963-34	chr4	146402243	146402742	+	0	NA	promoter-TSS (NM_005900)	promoter-TSS (NM_005900)	-459	NM_005900	4086	Hs.604588	NM_005900	ENSG00000170365	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
6.23423-8	chr8	135725240	135725739	+	0	NA	promoter-TSS (NM_020863)	promoter-TSS (NM_020863)	-197	NR_110323	57623	Hs.446172	NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
4.01209-6	chr6	47411064	47411563	+	0	NA	Intergenic	SVA_B|Other|Other	-34212	NM_012120	23607	Hs.485518	NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
6.55608-11	chr3	55034328	55034827	+	0	NA	intron (NM_018398, intron 31 of 37)	L1PA8|LINE|L1	-33462	NM_001304389	57408	Hs.591668	NM_020678	ENSG00000144771	LRTM1	HT017	leucine rich repeats and transmembrane domains 1	protein-coding
2.43364-21	chr14	96564962	96565461	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	59550	NM_001252507	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
0.555173-31	chr20	42939711	42940210	+	0	NA	promoter-TSS (NM_001080472)	promoter-TSS (NM_001080472)	-68	NM_001080472	128486	Hs.632269	NM_001080472	ENSG00000197296	FITM2	C20orf142|Fit2|dJ881L22.2	fat storage inducing transmembrane protein 2	protein-coding
1.06238-6	chr2	185136744	185137243	+	0	NA	Intergenic	Intergenic	-106709	NR_039638	100616305		NR_039638	ENSG00000266808	MIR548AE1	-	microRNA 548ae-1	ncRNA
10.8566	chr14	104808328	104808827	+	0	NA	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	203517	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
0.746879-7	chr3	13053854	13054353	+	0	NA	intron (NM_001134382, intron 1 of 14)	intron (NM_001134382, intron 1 of 14)	-25567	NM_001330619	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
0.851282-10	chr5	43285685	43286184	+	0	NA	Intergenic	AluSp|SINE|Alu	27392	NM_001324219	3157	Hs.397729	NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
14.0012-3	chr12	117766353	117766852	+	0	NA	intron (NM_001204218, intron 2 of 29)	Tigger3a|DNA|TcMar-Tigger	-19387	NM_001204214	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
2.58061-3	chr19	41955173	41955672	+	0	NA	Intergenic	Intergenic	6359	NM_001130514	100170765	Hs.649452	NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
0.680339-31	chr4	81990823	81991322	+	0	NA	Intergenic	Intergenic	38953	NM_001201	651	Hs.387411	NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
2.74088-11	chr10	120789787	120790286	+	0	NA	exon (NM_199461, exon 1 of 1)	exon (NM_199461, exon 1 of 1)	808	NM_199461	340719	Hs.591918	NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
2.48721-13	chr2	4028154	4028653	+	0	NA	Intergenic	MIRc|SINE|MIR	6652	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
0.245682-18	chr12	124906558	124907057	+	0	NA	intron (NM_001077261, intron 14 of 47)	intron (NM_001077261, intron 14 of 47)	-85019	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
0.496351-54	chr7	98972584	98973083	+	0	NA	intron (NM_005720, intron 1 of 9)	CpG	535	NM_005720	10095	Hs.489284	NM_005720	ENSG00000130429	ARPC1B	ARC41|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
6.51695-5	chr19	39970127	39970626	+	0	NA	promoter-TSS (NM_001329559)	promoter-TSS (NM_001329559)	-676	NM_001001563	92609	Hs.590956	NM_001001563	ENSG00000105197	TIMM50	TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
5.51294-9	chr13	71723121	71723620	+	0	NA	intron (NR_047699, intron 2 of 3)	intron (NR_047699, intron 2 of 3)	134097	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
11.6622-5	chr2	97625990	97626489	+	0	NA	intron (NM_001122646, intron 5 of 16)	intron (NM_001122646, intron 5 of 16)	26062	NM_001122646	51252	Hs.107922	NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
2.39578-6	chr1	99376446	99376945	+	0	NA	intron (NM_001010861, intron 5 of 5)	intron (NM_001010861, intron 5 of 5)	-93137	NR_033940	100129620	Hs.588631	NR_033940	ENSG00000232825	LOC100129620	-	uncharacterized LOC100129620	ncRNA
0.76756-31	chr1	110162081	110162580	+	0	NA	promoter-TSS (NM_001257360)	promoter-TSS (NM_001257360)	-105	NM_001257360	271	Hs.82927	NM_004037	ENSG00000116337	AMPD2	PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
0.0392635-21	chrX	83302172	83302671	+	0	NA	Intergenic	L1PA15-16|LINE|L1	140522	NM_014496	27330	Hs.234478	NM_014496	ENSG00000072133	RPS6KA6	PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6	ribosomal protein S6 kinase A6	protein-coding
6.51695-11	chr5	173631322	173631821	+	0	NA	Intergenic	Intergenic	-131786	NR_125806	101928176	Hs.436014	NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
28.3565-2	chr6	101744054	101744553	+	0	NA	Intergenic	Intergenic	-102558	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
16.1798-7	chr17	17614082	17614581	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	29544	NM_030665	10743	Hs.655395	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
1.89767-13	chrX	152735138	152735637	+	0	NA	intron (NM_017518, intron 1 of 9)	intron (NM_017518, intron 1 of 9)	702	NM_017518	55559	Hs.170835	NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
2.24026-22	chr1	43833384	43833883	+	0	NA	promoter-TSS (NM_001256399)	promoter-TSS (NM_001256399)	112	NM_001256402	64834	Hs.25597	NM_022821	ENSG00000066322	ELOVL1	CGI-88|Ssc1	ELOVL fatty acid elongase 1	protein-coding
9.43095-3	chr2	62409455	62409954	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-13558	NM_006577	10678	Hs.173203	NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
2.8735-12	chr13	78120166	78120665	+	0	NA	intron (NM_003843, intron 1 of 31)	intron (NM_003843, intron 1 of 31)	10606	NM_001160706	8796	Hs.534699	NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
0.409586-31	chrX	55775998	55776497	+	0	NA	intron (NM_016656, intron 6 of 10)	SVA_D|Other|Other	32137	NM_016656	10325	Hs.50282	NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
1.42065-15	chr19	1407150	1407649	+	0	NA	promoter-TSS (NM_170711)	promoter-TSS (NM_170711)	-169	NM_018959	26528	Hs.222510	NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
7.25842-6	chr10	46090107	46090606	+	0	NA	promoter-TSS (NM_145021)	promoter-TSS (NM_145021)	-2	NM_145021	220972	Hs.499489	NM_145021	ENSG00000165406	MARCH8	CMIR|MARCH-VIII|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
18.8941-9	chr11	76902952	76903451	+	0	NA	exon (NM_000260, exon 31 of 49)	exon (NM_000260, exon 31 of 49)	63885	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
4.89455-8	chr18	11851086	11851585	+	0	NA	promoter-TSS (NM_020412)	promoter-TSS (NM_020412)	-54	NM_020412	57132	Hs.656244	NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
0.51587-23	chr15	64648145	64648644	+	0	NA	promoter-TSS (NM_022048)	promoter-TSS (NM_022048)	64	NM_001329605	53944	Hs.646508	NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
7.72113-11	chr21	35319881	35320380	+	0	NA	intron (NR_134558, intron 2 of 2)	intron (NR_134558, intron 2 of 2)	16612	NR_134558	100506334	Hs.532855	NM_207472	ENSG00000237945	LINC00649	-	long intergenic non-protein coding RNA 649	ncRNA
2.35077-17	chr16	3210903	3211402	+	0	NA	Intergenic	Intergenic	16860	NR_132322	197350	Hs.434132	NR_132322	ENSG00000228146	CASP16P	CASP16	caspase 16, pseudogene	pseudo
1.16907-7	chr1	179922989	179923488	+	0	NA	promoter-TSS (NM_014810)	promoter-TSS (NM_014810)	-670	NM_014810	9857	Hs.413045	NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding
3.63512-23	chr9	133781904	133782403	+	0	NA	intron (NM_001145106, intron 6 of 7)	intron (NM_001145106, intron 6 of 7)	-9954	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
17.3518	chr9	102058547	102059046	+	0	NA	Intergenic	Intergenic	74226	NM_006808	10952	Hs.191887	NM_006808	ENSG00000106803	SEC61B	-	Sec61 translocon beta subunit	protein-coding
16.6959-4	chr16	72909078	72909577	+	0	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	172947	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
0.0130484-36	chr3	197381519	197382018	+	0	NA	Intergenic	CpG	19679	NR_030627	100126321		NR_030627	ENSG00000145016	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
0.5061	chr4	132505561	132506060	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-180183	NR_125883	101927305	Hs.507924	NR_125883		LOC101927305	-	uncharacterized LOC101927305	ncRNA
5.71865	chr13	111837006	111837505	+	0	NA	intron (NM_001113511, intron 3 of 19)	intron (NM_001113511, intron 3 of 19)	-1918	NM_001113513	8874	Hs.508738	NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
0.301184-35	chr7	76058163	76058662	+	0	NA	intron (NM_001110354, intron 1 of 7)	intron (NM_001110354, intron 1 of 7)	4140	NM_001110354	7784	Hs.656137	NM_007155	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
0.555173-11	chr1	168266192	168266691	+	0	NA	intron (NM_005149, intron 3 of 7)	intron (NM_005149, intron 3 of 7)	16163	NM_005149	9095	Hs.716656	NM_005149	ENSG00000143178	TBX19	TBS19|TPIT|dJ747L4.1	T-box 19	protein-coding
0.0130484	chr9	140008958	140009457	+	0	NA	promoter-TSS (NM_013379)	promoter-TSS (NM_013379)	-12	NM_013379	29952	Hs.37916	NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
12.5964-8	chr7	49951456	49951955	+	0	NA	exon (NM_198570, exon 4 of 4)	exon (NM_198570, exon 4 of 4)	136776	NR_136188	375567	Hs.629302	NM_198570	ENSG00000188730	VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
2.79014-7	chr7	113688820	113689319	+	0	NA	Intergenic	MER50|LTR|ERV1	-37296	NR_033766	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
3.79864-9	chr3	97536803	97537302	+	0	NA	Intergenic	Intergenic	-3832	NM_153605	131544	Hs.733378	NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
23.2514-2	chr2	222041319	222041818	+	0	NA	Intergenic	Intergenic	395510	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
0.190881-39	chr11	116658335	116658834	+	0	NA	exon (NM_001317086, exon 1 of 13)	exon (NM_001317086, exon 1 of 13)	170	NM_003904	8882	Hs.7165	NM_003904	ENSG00000109917	ZPR1	ZNF259	ZPR1 zinc finger	protein-coding
2.11125-4	chr5	110427722	110428559	+	0	NA	exon (NM_139281, exon 1 of 23)	exon (NM_139281, exon 1 of 23)	270	NM_139281	134430	Hs.533237	NM_139281	ENSG00000134987	WDR36	GLC1G|TA-WDRP|TAWDRP|UTP21	WD repeat domain 36	protein-coding
0.0921731-5	chr18	64561715	64562214	+	0	NA	Intergenic	SVA_B|Other|Other	-186857	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
3.40084-28	chr15	41186296	41186795	+	0	NA	promoter-TSS (NM_020857)	promoter-TSS (NM_020857)	-83	NM_020857	57617	Hs.23876	NM_020857	ENSG00000104142	VPS18	PEP3	VPS18, CORVET/HOPS core subunit	protein-coding
7.35182-2	chr11	124481896	124482395	+	0	NA	intron (NM_052959, intron 1 of 3)	intron (NM_052959, intron 1 of 3)	692	NM_052959	116337	Hs.99235	NM_052959	ENSG00000154143	PANX3	PX3	pannexin 3	protein-coding
0.254883-48	chr3	15247328	15247827	+	0	NA	promoter-TSS (NR_027927)	promoter-TSS (NR_027927)	-111	NR_027927	344875	Hs.722756	NR_027927	ENSG00000230524	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|VWA6	collagen type VI alpha 4 pseudogene 1	pseudo
0.132283-32	chr10	129886549	129887048	+	0	NA	Intergenic	Intergenic	-26109	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
14.2251-2	chr7	70884423	70884922	+	0	NA	intron (NM_022479, intron 4 of 10)	intron (NM_022479, intron 4 of 10)	-111916	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	ncRNA
2.26214-9	chr10	99094345	99094844	+	0	NA	promoter-TSS (NM_012083)	promoter-TSS (NM_012083)	-136	NM_012083	23401	Hs.140720	NM_012083	ENSG00000181274	FRAT2	-	FRAT2, WNT signaling pathway regulator	protein-coding
1.16339-11	chr11	82931168	82931667	+	0	NA	intron (NM_001300973, intron 5 of 11)	HERV30-int|LTR|ERV1	26636	NM_001300977	338699	Hs.503438	NM_182603	ENSG00000137494	ANKRD42	PPP1R79|SARP	ankyrin repeat domain 42	protein-coding
3.50665-3	chr7	107749674	107750173	+	0	NA	intron (NM_001318048, intron 4 of 17)	intron (NM_001318048, intron 4 of 17)	20878	NM_001318048	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
2.43364-20	chr5	8157399	8157898	+	0	NA	Intergenic	Intergenic	288431	NM_024010	4552	Hs.481551	NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
2.47184-16	chr16	74729675	74730174	+	0	NA	intron (NM_001142497, intron 1 of 5)	MLT1J2|LTR|ERVL-MaLR	5122	NM_152649	197259	Hs.119878	NM_152649	ENSG00000168404	MLKL	hMLKL	mixed lineage kinase domain like pseudokinase	protein-coding
0.550241-17	chr2	11919221	11919720	+	0	NA	intron (NM_001261429, intron 7 of 9)	intron (NM_001261429, intron 7 of 9)	11900	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
1.21478-11	chr3	18165909	18166408	+	0	NA	intron (NM_001257177, intron 4 of 4)	MLT1I|LTR|ERVL-MaLR	162094	NM_001257177	339862	Hs.652981	NM_001257177		LOC339862	-	uncharacterized LOC339862	protein-coding
8.06875-11	chr3	139907090	139907589	+	0	NA	intron (NM_022131, intron 2 of 16)	intron (NM_022131, intron 2 of 16)	253312	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
23.5853-6	chr13	66130529	66131028	+	0	NA	Intergenic	L1PA16|LINE|L1	-309401	NR_132362	105370242	Hs.578051	NR_132362		LINC01052	-	long intergenic non-protein coding RNA 1052	ncRNA
0.736576-24	chr2	87268586	87269085	+	0	NA	intron (NR_026846, intron 6 of 10)	MER52-int|LTR|ERV1	-19862	NM_002665	5342	Hs.652169	NM_002665	ENSG00000125551	PLGLB2	PLGP1	plasminogen-like B2	protein-coding
0.510982-4	chr13	105791631	105792130	+	0	NA	Intergenic	Intergenic	-326336	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
12.7327-2	chr8	1923952	1924451	+	0	NA	non-coding (NR_126346, exon 3 of 3)	non-coding (NR_126346, exon 3 of 3)	2157	NM_014867	9920	Hs.5333	NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
1.45694-24	chr5	116824660	116825159	+	0	NA	intron (NR_046089, intron 3 of 5)	intron (NR_046089, intron 3 of 5)	73701	NR_046089	728342	Hs.434420	NR_046089		LINC00992	-	long intergenic non-protein coding RNA 992	ncRNA
2.30623-19	chr7	50859973	50860472	+	0	NA	intron (NM_001001555, intron 1 of 16)	intron (NM_001001555, intron 1 of 16)	937	NM_001001555	2887	Hs.164060	NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
0.520764-17	chr1	46268350	46268849	+	0	NA	promoter-TSS (NM_001324320)	promoter-TSS (NM_001324320)	-680	NM_001324320	23139	Hs.319481	NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
0.584886-19	chr1	201992167	201992666	+	0	NA	Intergenic	Intergenic	12726	NM_001114309	1999	Hs.603657	NM_004433	ENSG00000163435	ELF3	EPR-1|ERT|ESE-1|ESX	E74 like ETS transcription factor 3	protein-coding
2.23299-2	chr10	80621110	80621609	+	0	NA	Intergenic	Intergenic	205846	NR_015429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
2.50264-2	chr17	77702266	77702765	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2350	NM_178543	339221	Hs.114084	NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
0.565055-13	chr5	39283367	39283866	+	0	NA	TTS (NM_001737)	TTS (NM_001737)	-12857	NM_001243093	2533	Hs.370503	NM_001465	ENSG00000082074	FYB	ADAP|PRO0823|SLAP-130|SLAP130	FYN binding protein	protein-coding
1.44481-4	chr18	839236	839735	+	0	NA	Intergenic	Intergenic	-27158	NM_005433	7525	Hs.194148	NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
1.73925-11	chr11	60673842	60674341	+	0	NA	promoter-TSS (NM_014502)	promoter-TSS (NM_014502)	-30	NM_014502	27339	Hs.502705	NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
3.39135-8	chr1	33351978	33352477	+	0	NA	intron (NM_002143, intron 1 of 3)	CpG	129	NM_002143	3208	Hs.632391	NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
0.883098-4	chr4	185925867	185926366	+	0	NA	Intergenic	Intergenic	-13879	NM_001300782	391723	Hs.531242	NM_001029887	ENSG00000187821	HELT	HCM1228|HESL|Mgn|bHLHb44	helt bHLH transcription factor	protein-coding
1.43271-15	chr3	197024775	197025274	+	0	NA	promoter-TSS (NR_038289)	promoter-TSS (NR_038289)	-94	NR_038289	100507086	Hs.636103	NR_038289	ENSG00000227375	DLG1-AS1	-	DLG1 antisense RNA 1	ncRNA
3.49692-16	chr12	105392737	105393236	+	0	NA	Intergenic	L1PA13|LINE|L1	12888	NM_152318	121053	Hs.295563	NM_152318	ENSG00000151131	C12orf45	-	chromosome 12 open reading frame 45	protein-coding
1.4691-4	chr17	71762322	71762821	+	0	NA	intron (NR_027146, intron 2 of 3)	intron (NR_027146, intron 2 of 3)	-20390	NR_040020	400620	Hs.348644	NR_040020	ENSG00000234721	LINC02092	-	long intergenic non-protein coding RNA 2092	ncRNA
1.27261-8	chr5	72399519	72400018	+	0	NA	Intergenic	MER72|LTR|ERV1	-16620	NM_001161342	134285	Hs.162246	NM_173490	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
3.93619-19	chr2	86054509	86055008	+	0	NA	TTS (NR_038888)	TTS (NR_038888)	12505	NR_038888	284950	Hs.570227	NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
0.0348833-7	chr17	55685013	55685512	+	0	NA	intron (NR_110807, intron 1 of 2)	MSTB|LTR|ERVL-MaLR	511	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
5.14279-10	chr12	68337017	68337516	+	0	NA	intron (NR_120456, intron 2 of 2)	intron (NR_120456, intron 2 of 2)	14251	NR_120456	101927922	Hs.450769	NR_120456	ENSG00000255772	LINC01479	HRAT39	long intergenic non-protein coding RNA 1479	ncRNA
4.36519-7	chr17	8152379	8152878	+	0	NA	promoter-TSS (NM_012393)	promoter-TSS (NM_012393)	32	NM_012393	5198	Hs.573976	NM_012393	ENSG00000178921	PFAS	FGAMS|FGAR-AT|FGARAT|PURL	phosphoribosylformylglycinamidine synthase	protein-coding
3.53596-5	chr2	137013556	137014055	+	0	NA	Intergenic	Intergenic	-138080	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
1.35489-7	chr8	49608886	49609385	+	0	NA	non-coding (NR_105002, exon 4 of 4)	non-coding (NR_105002, exon 4 of 4)	38735	NR_024605	79645	Hs.23245	NM_024593	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
0.958256-2	chr1	145038955	145039454	+	0	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	759	NR_144516	100996724	Hs.682380	NR_144516		LOC100996724	-	phosphodiesterase 4D interacting protein-like	pseudo
0.245682-13	chr22	25290362	25290861	+	0	NA	intron (NM_001098497, intron 17 of 24)	MLT1H|LTR|ERVL-MaLR	44703	NM_001001663	255349	Hs.329040	NM_001001663	ENSG00000206069	TMEM211	bA9F11.1	transmembrane protein 211	protein-coding
2.04815-14	chr8	61729738	61730237	+	0	NA	intron (NM_017780, intron 8 of 37)	intron (NM_017780, intron 8 of 37)	76169	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
3.17855-3	chr1	117636893	117637392	+	0	NA	promoter-TSS (NR_030640)	promoter-TSS (NR_030640)	-123	NR_030640	100126331		NR_030640	ENSG00000215930	MIR942	MIRN942|hsa-mir-942|mir-942	microRNA 942	ncRNA
1.76526-4	chr2	74934833	74935808	+	0	NA	Intergenic	L1MEc|LINE|L1	53965	NR_073398	10505	Hs.25887	NM_004263	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	ssemaphorin 4F	protein-coding
1.20331-11	chr11	90797182	90797681	+	0	NA	Intergenic	SVA_D|Other|Other	-195061	NR_031663	100302228		NR_031663	ENSG00000221586	MIR1261	MIRN1261|hsa-mir-1261	microRNA 1261	ncRNA
37.9317	chr4	148634383	148634882	+	0	NA	Intergenic	L1PA15|LINE|L1	-18821	NM_024605	79658	Hs.368631	NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
1.42668-9	chr18	42419510	42420009	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	130372	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
0.259491-7	chr5	9055956	9056455	+	0	NA	intron (NM_003966, intron 18 of 22)	intron (NM_003966, intron 18 of 22)	-2198	NR_039779	100616326		NR_039779	ENSG00000266415	MIR4636	mir-4636	microRNA 4636	ncRNA
1.05684-4	chr3	73673758	73674257	+	0	NA	promoter-TSS (NM_015009)	promoter-TSS (NM_015009)	65	NM_015009	23024	Hs.660347	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3|SEMCAP3	PDZ domain containing ring finger 3	protein-coding
6.23423	chr15	45111657	45112156	+	0	NA	Intergenic	Intergenic	83346	NM_001301144	140691	Hs.745248	NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
0.990869-8	chr19	36266250	36266749	+	0	NA	promoter-TSS (NM_001172630)	promoter-TSS (NM_001172630)	82	NM_052948	115703	Hs.515364	NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
0.177288-2	chr5	80479840	80480339	+	0	NA	intron (NM_006909, intron 18 of 26)	intron (NM_006909, intron 18 of 26)	-21373	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
0.614803-10	chr7	44836362	44837315	+	0	NA	intron (NM_021130, intron 1 of 4)	intron (NM_021130, intron 1 of 4)	603	NM_021130	5478	Hs.356331	NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
0.419142-34	chr4	171726437	171726936	+	0	NA	Intergenic	LTR1|LTR|ERV1	-61800	NR_134683	100506107	Hs.380602	NR_134683	ENSG00000250968	LOC100506107	-	uncharacterized LOC100506107	ncRNA
2.32102-7	chr2	8464561	8465060	+	0	NA	non-coding (NR_034135, exon 2 of 9)	non-coding (NR_034135, exon 2 of 9)	3739	NR_034135	339789	Hs.565619	NM_207358	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
0.491485-26	chr20	4959148	4959647	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	22748	NM_005116	9962	Hs.516866	NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2|hSVCT2	solute carrier family 23 member 2	protein-coding
1.16907-8	chr12	120378616	120379115	+	0	NA	Intergenic	Intergenic	-48783	NM_207311	92558	Hs.369763	NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
1.02373-21	chr1	215256036	215256535	+	0	NA	promoter-TSS (NM_001017425)	promoter-TSS (NM_001017425)	-275	NM_001017425	3776	Hs.497745	NM_014217	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	potassium two pore domain channel subfamily K member 2	protein-coding
0.680339-14	chr2	13690711	13691210	+	0	NA	Intergenic	Intergenic	-543822	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
1.17475-32	chr4	124405453	124405952	+	0	NA	Intergenic	Intergenic	85057	NM_005841	10252	Hs.744854	NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
0.75204-2	chr4	158899824	158900323	+	0	NA	Intergenic	Intergenic	193645	NM_016613	51313	Hs.567498	NM_016613	ENSG00000164125	FAM198B	AD021|AD036|C4orf18|ENED	family with sequence similarity 198 member B	protein-coding
2.24754-7	chr8	74205326	74205825	+	0	NA	intron (NM_000971, intron 1 of 6)	intron (NM_000971, intron 1 of 6)	294	NM_000971	6129	Hs.421257	NM_000971	ENSG00000147604	RPL7	L7|humL7-1	ribosomal protein L7	protein-coding
1.89096-5	chr6	85125154	85125653	+	0	NA	Intergenic	Intergenic	59244	NR_132100	105377880	Hs.171384	NR_132100	ENSG00000231776	LINC01611	TCONS_l2_00025430	long intergenic non-protein coding RNA 1611	ncRNA
0.414361-14	chr11	110187684	110188183	+	0	NA	Intergenic	Intergenic	-20496	NM_002906	5962	Hs.263671	NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
1.99283-9	chr6	108863163	108863662	+	0	NA	Intergenic	Intergenic	-17614	NM_201559	2309	Hs.220950	NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
0.118872-45	chr16	81466675	81467174	+	0	NA	Intergenic	Intergenic	-11851	NM_198390	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
2.11832-2	chr3	68057008	68057507	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	3898	NM_213609	407738	Hs.655061	NM_213609	ENSG00000183662	FAM19A1	TAFA-1|TAFA1	family with sequence similarity 19 member A1, C-C motif chemokine like	protein-coding
16.3264-3	chr7	16831503	16832002	+	0	NA	TTS (NM_006408)	TTS (NM_006408)	12986	NM_006408	10551	Hs.530009	NM_006408	ENSG00000106541	AGR2	AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2	anterior gradient 2, protein disulphide isomerase family member	protein-coding
1.33122-23	chr6	137242501	137243000	+	0	NA	promoter-TSS (NM_001008783)	promoter-TSS (NM_001008783)	-629	NM_001008783	340146	Hs.369703	NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
6.73664-2	chr3	19030017	19030516	+	0	NA	Intergenic	Intergenic	-159751	NM_144633	131096	Hs.475656	NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
1.84422-2	chr9	37036729	37037228	+	0	NA	Intergenic	CpG	-2502	NM_001280555	5079	Hs.654464	NM_016734	ENSG00000196092	PAX5	ALL3|BSAP	paired box 5	protein-coding
2.88193-17	chr22	16201878	16202377	+	0	NA	intron (NR_132385, intron 2 of 2)	intron (NR_132385, intron 2 of 2)	-9118	NR_122113	503637	Hs.744284	NR_122113	ENSG00000206195	DUXAP8	-	double homeobox A pseudogene 8	pseudo
26.6959-3	chr3	170807298	170807797	+	0	NA	intron (NM_001161560, intron 22 of 31)	intron (NM_001161560, intron 22 of 31)	17001	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
23.1695	chr13	112507018	112507517	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-40425	NR_046992	101928616	Hs.528450	NR_046992		LINC00354	-	long intergenic non-protein coding RNA 354	ncRNA
27.122	chr12	94699040	94699539	+	0	NA	TTS (NM_001346457)	TTS (NM_001346457)	42992	NR_037687	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
22.4642	chr7	133260372	133260871	+	0	NA	intron (NM_021807, intron 9 of 17)	intron (NM_021807, intron 9 of 17)	249020	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
1.22629-2	chr10	98948031	98948530	+	0	NA	intron (NR_037909, intron 11 of 14)	intron (NR_037909, intron 11 of 14)	-2597	NM_003061	6585	Hs.632082	NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
7.61954-12	chr18	32821329	32821828	+	0	NA	intron (NM_032347, intron 1 of 5)	intron (NM_032347, intron 1 of 5)	584	NM_032347	84307	Hs.591061	NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
10.0087	chr11	47949865	47950364	+	0	NA	Intergenic	Intergenic	-51996	NM_001098503	5795	Hs.318547	NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type J	protein-coding
14.6597-2	chr3	139228418	139228917	+	0	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	30004	NM_002899	5947	Hs.529571	NM_002899	ENSG00000114115	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1	protein-coding
1.37869-52	chrX	129091118	129091617	+	0	NA	Intergenic	CpG	-47797	NM_001184772	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
2.99296-13	chr16	89307055	89307554	+	0	NA	Intergenic	L1MEf|LINE|L1	23193	NM_001201407	197320	Hs.647385	NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
7.61954-3	chr6	53199960	53200459	+	0	NA	non-coding (NR_046241, exon 1 of 1)	non-coding (NR_046241, exon 1 of 1)	2206	NR_046241	647190	Hs.520189	NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
0.0833099-18	chr2	180459934	180460433	+	0	NA	intron (NM_152520, intron 3 of 9)	intron (NM_152520, intron 3 of 9)	-9550	NR_104234	151126	Hs.655005	NM_152520	ENSG00000144331	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
12.6122-6	chr5	137181135	137181634	+	0	NA	Intergenic	Intergenic	-22161	NM_006790	9499	Hs.84665	NM_006790	ENSG00000120729	MYOT	LGMD1|LGMD1A|MFM3|TTID|TTOD	myotilin	protein-coding
1.09579	chr8	5789973	5790472	+	0	NA	Intergenic	Intergenic	473847	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
0.47692-2	chrX	83301319	83301818	+	0	NA	Intergenic	L1PA15-16|LINE|L1	141375	NM_014496	27330	Hs.234478	NM_014496	ENSG00000072133	RPS6KA6	PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6	ribosomal protein S6 kinase A6	protein-coding
7.05534	chr2	217639779	217640278	+	0	NA	Intergenic	Intergenic	-79756	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
1.29011-8	chr17	27280432	27280931	+	0	NA	Intergenic	Intergenic	-2173	NM_001033561	57649	Hs.444173	NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
6.16185-14	chr9	139538758	139539257	+	0	NA	Intergenic	Intergenic	-14301	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
42.2695	chr2	161530604	161531103	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-180535	NM_002897	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
0.550241-33	chr12	133041944	133042443	+	0	NA	Intergenic	Intergenic	-24964	NM_001142641	57666	Hs.411138	NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
1.38466-11	chr2	232549018	232549517	+	0	NA	Intergenic	Intergenic	-23968	NM_001099285	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding
28.3863-3	chr5	10519560	10520059	+	0	NA	intron (NR_134289, intron 1 of 2)	intron (NR_134289, intron 1 of 2)	2387	NR_134289	389273	Hs.519206	NR_134289	ENSG00000249160	LOC389273	-	uncharacterized LOC389273	ncRNA
1.15771-28	chr4	139896706	139897205	+	0	NA	intron (NR_133945, intron 2 of 2)	MER4D|LTR|ERV1	36845	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
3.30683-22	chr13	50967667	50968166	+	0	NA	intron (NR_109974, intron 3 of 6)	MER1A|DNA|hAT-Charlie	133669	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
8.96196-8	chr13	43708946	43709445	+	0	NA	intron (NR_047013, intron 1 of 2)	intron (NR_047013, intron 1 of 2)	21894	NR_047013	100874159	Hs.633241	NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
0.227338-21	chr2	9282745	9283244	+	0	NA	Intergenic	Intergenic	-63900	NM_003887	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
24.9485	chr17	21356738	21357237	+	0	NA	Intergenic	MER90a|LTR|ERV1	48539	NM_001194958	100134444	Hs.200629	NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium voltage-gated channel subfamily J member 18	protein-coding
1.67491-6	chr7	122605947	122606446	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	29558	NM_016945	50833	Hs.272395	NM_016945	ENSG00000128519	TAS2R16	T2R16	taste 2 receptor member 16	protein-coding
0.883098-8	chr1	84587212	84587711	+	0	NA	intron (NM_002731, intron 1 of 9)	intron (NM_002731, intron 1 of 9)	-22470	NM_182948	5567	Hs.487325	NM_002731	ENSG00000142875	PRKACB	PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
4.00117-7	chr20	17591883	17592382	+	0	NA	Intergenic	Intergenic	41533	NM_001011546	11034	Hs.304192	NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
29.6257	chr12	5048444	5048943	+	0	NA	Intergenic	Intergenic	29620	NM_000217	3736	Hs.416139	NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
9.28118-11	chr18	77336893	77337392	+	0	NA	Intergenic	Intergenic	102603	NR_136643	284241		NR_136643	ENSG00000178412	LOC284241	-	uncharacterized LOC284241	ncRNA
27.6955	chr12	76474391	76474890	+	0	NA	intron (NM_001330231, intron 1 of 15)	MSTC|LTR|ERVL-MaLR	4173	NM_001307924	4673	Hs.524599	NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
0.305841-14	chr6	126142847	126143346	+	0	NA	intron (NM_001199621, intron 2 of 14)	intron (NM_001199621, intron 2 of 14)	-3092	NR_126386	104355145	Hs.590370	NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
4.85452-3	chr18	63658158	63658657	+	0	NA	Intergenic	Intergenic	240519	NM_001317214	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
0.0921731-28	chr3	171757078	171757577	+	0	NA	promoter-TSS (NM_022763)	promoter-TSS (NM_022763)	-91	NM_022763	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
2.43364-10	chr22	45559469	45559968	+	0	NA	promoter-TSS (NM_007172)	promoter-TSS (NM_007172)	-8	NM_007172	10762	Hs.475103	NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
33.0452	chr5	1555327	1555826	+	0	NA	Intergenic	Intergenic	-31484	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
4.698-11	chr16	85458223	85458722	+	0	NA	Intergenic	Intergenic	-118541	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
0.0392635-39	chr20	61866032	61866531	+	0	NA	promoter-TSS (NM_022161)	promoter-TSS (NM_022161)	-954	NM_022161	79444	Hs.256126	NM_022161	ENSG00000101197	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
0.381045-2	chr4	114799800	114800299	+	0	NA	Intergenic	LTR35|LTR|ERV1	100829	NM_024590	79642	Hs.22895	NM_024590	ENSG00000180801	ARSJ	-	arylsulfatase family member J	protein-coding
1.30768-11	chr9	21974747	21975246	+	0	NA	promoter-TSS (NM_058197)	promoter-TSS (NM_058197)	136	NM_001195132	1029	Hs.512599	NM_000077	ENSG00000147889	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
1.35489-37	chr10	99177855	99178354	+	0	NA	Intergenic	FAM|SINE|Alu	-7778	NM_002629	5223	Hs.632918	NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
4.22508-4	chr11	61584196	61584695	+	0	NA	promoter-TSS (NM_013402)	promoter-TSS (NM_013402)	84	NM_013402	3992	Hs.503546	NM_013402	ENSG00000149485	FADS1	D5D|FADS6|FADSD5|LLCDL1|TU12	fatty acid desaturase 1	protein-coding
0.0305075-8	chr18	55785143	55785642	+	0	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-31173	NM_001144969	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
0.920515-6	chr9	133002824	133003323	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-25085	NM_001291815	256158	Hs.32194	NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
42.3433	chr1	40626700	40627199	+	0	NA	promoter-TSS (NM_012421)	promoter-TSS (NM_012421)	-92	NM_012421	6018	Hs.205627	NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	rearranged L-myc fusion	protein-coding
3.27902-2	chr16	49893289	49893788	+	0	NA	Intergenic	Intergenic	-1708	NM_001271620	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
0.0130484-49	chr3	77306183	77306682	+	0	NA	intron (NM_001128929, intron 1 of 24)	intron (NM_001128929, intron 1 of 24)	159269	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
2.53366-7	chr6	93520541	93521040	+	0	NA	Intergenic	Intergenic	608510	NM_001288629	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
9.62574-2	chr3	196670912	196671411	+	0	NA	TTS (NR_024388)	TTS (NR_024388)	1667	NR_024388	152217	Hs.118820	NR_024388		NCBP2-AS2	-	NCBP2 antisense RNA 2 (head to head)	ncRNA
0.452752-16	chr3	49377904	49378403	+	0	NA	promoter-TSS (NM_001251877)	promoter-TSS (NM_001251877)	-617	NM_001251877	7375	Hs.77500	NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
0.75204	chr2	165759636	165760135	+	0	NA	intron (NM_001199148, intron 10 of 10)	intron (NM_001199148, intron 10 of 10)	52150	NM_173512	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
5.43634-9	chr16	10830754	10831253	+	0	NA	Intergenic	Intergenic	-6640	NM_002484	4682	Hs.81469	NM_002484	ENSG00000103274	NUBP1	NBP|NBP1|NBP35	nucleotide binding protein 1	protein-coding
1.0513-12	chr4	2648994	2649493	+	0	NA	intron (NM_003704, intron 5 of 18)	intron (NM_003704, intron 5 of 18)	22084	NR_046335	8603	Hs.652364	NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
3.40084-14	chr20	60697116	60697615	+	0	NA	promoter-TSS (NM_144703)	promoter-TSS (NM_144703)	-152	NM_144703	149986	Hs.105379	NM_144703	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
6.55608-17	chr18	47375961	47376460	+	0	NA	non-coding (NR_117096, exon 4 of 4)	non-coding (NR_117096, exon 4 of 4)	35817	NR_117096	103091864	Hs.646459	NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
0.0833099-35	chr3	52091231	52091730	+	0	NA	Intergenic	CpG	-1019	NM_001947	1849	Hs.591664	NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
16.968	chr1	244933810	244934309	+	0	NA	Intergenic	L2c|LINE|L2	-64549	NM_001312871	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20, cytochrome c oxidase assembly factor	protein-coding
2.47184-8	chr17	79196815	79197314	+	0	NA	promoter-TSS (NM_001009811)	promoter-TSS (NM_001009811)	-275	NM_001009811	22994	Hs.514578	NM_014984	ENSG00000141577	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131	protein-coding
3.6251-10	chr6	144386044	144386543	+	0	NA	promoter-TSS (NM_001289040)	promoter-TSS (NM_001289040)	-557	NM_001289037	5325	Hs.743225	NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
3.68556-2	chr1	162427156	162427655	+	0	NA	Intergenic	SVA_A|Other|Other	-39559	NM_001184763	127933	Hs.127310	NM_144624	ENSG00000152332	UHMK1	KIS|KIST|P-CIP2	U2AF homology motif kinase 1	protein-coding
12.0135-7	chr9	92206252	92206751	+	0	NA	Intergenic	Intergenic	-13426	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
1.53045	chr8	140353001	140353500	+	0	NA	Intergenic	Intergenic	362049	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
4.90797-2	chr9	14131495	14131994	+	0	NA	intron (NM_001190737, intron 6 of 10)	intron (NM_001190737, intron 6 of 10)	49057	NM_001282787	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
9.10095-6	chr11	19870780	19871279	+	0	NA	intron (NM_182964, intron 3 of 37)	intron (NM_182964, intron 3 of 37)	-89400	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
1.79799-28	chr12	34357600	34358099	+	0	NA	Intergenic	Intergenic	182633	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
14.8812-5	chr17_gl000205_random	25393	25892	+	0	NA	Intergenic	Intergenic	-90981	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
13.3442	chr18	25141464	25141963	+	0	NA	Intergenic	Intergenic	-219093	NR_134589	105372038	Hs.722107	NR_134589	ENSG00000264151	LOC105372038	-	uncharacterized LOC105372038	ncRNA
5.54396-5	chr8	6566255	6566754	+	0	NA	promoter-TSS (NR_125386)	promoter-TSS (NR_125386)	626	NM_018361	55326	Hs.624002	NM_018361	ENSG00000155189	AGPAT5	1AGPAT5|LPAATE	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
5.05845-11	chr10	28944115	28944614	+	0	NA	Intergenic	SVA_C|Other|Other	-22060	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
0.070049-12	chr3	112950669	112951168	+	0	NA	intron (NM_001301861, intron 2 of 19)	intron (NM_001301861, intron 2 of 19)	19574	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
1.01275-4	chr4	148787899	148788398	+	0	NA	intron (NM_024605, intron 7 of 22)	intron (NM_024605, intron 7 of 22)	84402	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
10.1547-2	chr3	153857633	153858132	+	0	NA	intron (NM_015595, intron 4 of 14)	intron (NM_015595, intron 4 of 14)	18733	NM_001251963	26084	Hs.240845	NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
0.414361-2	chr20	36518974	36519473	+	0	NA	Intergenic	Intergenic	-12276	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
4.77556-6	chr1	244137706	244138205	+	0	NA	intron (NR_033883, intron 1 of 11)	intron (NR_033883, intron 1 of 11)	57251	NR_033883	339529	Hs.209374	NR_033883	ENSG00000226828	LOC339529	-	uncharacterized LOC339529	ncRNA
1.05684-12	chr2	113403655	113404154	+	0	NA	intron (NM_005415, intron 1 of 10)	CpG	470	NM_005415	6574	Hs.187946	NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
0.268721-39	chr17	43663522	43664021	+	0	NA	Intergenic	CpG	15457	NR_026901	644172	Hs.448859	NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
3.69572-2	chr1	167191384	167191883	+	0	NA	intron (NM_002697, intron 1 of 15)	intron (NM_002697, intron 1 of 15)	1510	NR_037163	5451	Hs.283402	NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
1.6877	chr3	66022860	66023359	+	0	NA	intron (NM_015520, intron 1 of 24)	intron (NM_015520, intron 1 of 24)	1400	NM_001033057	9223	Hs.476636	NM_004742	ENSG00000151276	MAGI1	AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|Magi1d|TNRC19|WWP3	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
0.462403-4	chr2	228092873	228093372	+	0	NA	intron (NR_102371, intron 11 of 13)	intron (NR_102371, intron 11 of 13)	63841	NM_000091	1285	Hs.570065	NM_000091	ENSG00000169031	COL4A3	-	collagen type IV alpha 3 chain	protein-coding
0.467237-21	chr10	74087723	74088222	+	0	NA	Intergenic	Intergenic	26935	NM_017626	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
10.048	chr2	238499453	238499952	+	0	NA	promoter-TSS (NM_022449)	promoter-TSS (NM_022449)	67	NR_033308	64284	Hs.44278	NM_022449	ENSG00000124839	RAB17	-	RAB17, member RAS oncogene family	protein-coding
0.209071-24	chr9	130474208	130474707	+	0	NA	intron (NM_001012502, intron 5 of 8)	intron (NM_001012502, intron 5 of 8)	3498	NM_001345980	138428	Hs.653265	NM_001002913	ENSG00000187024	PTRH1	C9orf115|PTH1	peptidyl-tRNA hydrolase 1 homolog	protein-coding
2.5649-15	chr3	19255064	19255563	+	0	NA	intron (NM_144633, intron 1 of 15)	intron (NM_144633, intron 1 of 15)	65296	NM_144633	131096	Hs.475656	NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
4.68521-12	chr3	193109671	193110170	+	0	NA	Intergenic	Intergenic	-13406	NM_198505	344905	Hs.658032	NM_198505	ENSG00000187527	ATP13A5	-	ATPase 13A5	protein-coding
21.9382-3	chr14	23194382	23194881	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-41100	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	OXA1L, mitochondrial inner membrane protein	protein-coding
1.22053-25	chr16	71391368	71391867	+	0	NA	promoter-TSS (NM_001740)	promoter-TSS (NM_001740)	-999	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
16.4589	chr5	15601865	15602364	+	0	NA	TTS (NR_109945)	TTS (NR_109945)	12997	NR_109945	101929472	Hs.662664	NR_109945		CTD-2350J17.1	-	uncharacterized LOC101929472	ncRNA
0.190881-42	chr8	110703660	110704159	+	0	NA	5' UTR (NM_001099743, exon 1 of 8)	5' UTR (NM_001099743, exon 1 of 8)	111	NM_001099744	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
7.56962-11	chr18	40255885	40256384	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	439523	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding
7.16699-20	chr11	63677577	63678076	+	0	NA	TTS (NM_173587)	TTS (NM_173587)	6490	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
31.9382	chr8	64219993	64220492	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	138680	NM_001277818	253943	Hs.491861	NM_152758	ENSG00000185728	YTHDF3	-	YTH N6-methyladenosine RNA binding protein 3	protein-coding
1.52427-9	chr14	60714759	60715258	+	0	NA	promoter-TSS (NM_021003)	promoter-TSS (NM_021003)	-958	NM_177951	5494	Hs.130036	NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
10.8145	chr5	144379418	144379917	+	0	NA	Intergenic	L1PA16|LINE|L1	829230	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
8.86057-11	chr8	63698795	63699294	+	0	NA	intron (NR_130764, intron 4 of 6)	intron (NR_130764, intron 4 of 6)	-191376	NR_027378	643763	Hs.491856	NM_001039769	ENSG00000274956	UG0898H09	-	uncharacterized LOC643763	ncRNA
0.145735-12	chr12	92271517	92272016	+	0	NA	Intergenic	Intergenic	263723	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
0.550241-23	chr3	100480054	100480553	+	0	NA	intron (NM_015429, intron 30 of 34)	intron (NM_015429, intron 30 of 34)	51917	NM_001195478	10342	Hs.518123	NM_006070	ENSG00000114354	TFG	HMSNP|SPG57|TF6|TRKT3	TRK-fused gene	protein-coding
0.296531-49	chr17	75052241	75052740	+	0	NA	Intergenic	CpG	-32235	NM_001204408	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
3.12471-11	chr1	39958210	39958709	+	0	NA	intron (NM_181809, intron 1 of 6)	intron (NM_181809, intron 1 of 6)	1141	NM_181809	353500	Hs.472497	NM_181809	ENSG00000183682	BMP8A	-	bone morphogenetic protein 8a	protein-coding
1.71985	chr5	40835314	40835813	+	0	NA	promoter-TSS (NM_000997)	promoter-TSS (NM_000997)	-176	NM_000997	6167	Hs.447582	NM_000997	ENSG00000145592	RPL37	L37	ribosomal protein L37	protein-coding
7.4958-9	chr1	29736378	29736877	+	0	NA	Intergenic	Intergenic	-60001	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LINC01756	-	long intergenic non-protein coding RNA 1756	ncRNA
24.4733	chr18	1047111	1047610	+	0	NA	Intergenic	Intergenic	142163	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
3.30683-20	chr12	56842902	56843401	+	0	NA	promoter-TSS (NM_001330295)	promoter-TSS (NM_001330295)	98	NM_001330295	8914	Hs.118631	NM_003920	ENSG00000111602	TIMELESS	TIM|TIM1|hTIM	timeless circadian clock	protein-coding
0.0261362-42	chr16	729847	730346	+	0	NA	promoter-TSS (NR_136337)	promoter-TSS (NR_136337)	-15	NM_001293197	10273	Hs.592081	NM_005861	ENSG00000103266	STUB1	CHIP|HSPABP2|NY-CO-7|SCAR16|SDCCAG7|UBOX1	STIP1 homology and U-box containing protein 1	protein-coding
0.241089-10	chr17	17661288	17661787	+	0	NA	TTS (NR_130894)	TTS (NR_130894)	8079	NR_130894	100861516	Hs.624874	NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
7.93174-4	chr16	75497894	75498393	+	0	NA	exon (NM_001304997, exon 1 of 3)	exon (NM_001304997, exon 1 of 3)	171	NM_001304997	124491	Hs.487510	NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
7.9588	chr2	1379578	1380077	+	0	NA	Intergenic	Intergenic	-37406	NM_001206744	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
0.491485-19	chr7_gl000195_random	66072	66571	+	0	NA	promoter-TSS (NM_001322975)	promoter-TSS (NM_001322975)	-281	NM_001322975	102723360	Hs.743984	NM_001322975	ENSG00000277991	LOC102723360	-	uncharacterized LOC102723360	protein-coding
1.11259-14	chr20	1247103	1247602	+	0	NA	5' UTR (NM_014723, exon 2 of 6)	5' UTR (NM_014723, exon 2 of 6)	417	NM_001318234	9751	Hs.323833	NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
0.105502-14	chr12	72740056	72740555	+	0	NA	intron (NM_013381, intron 2 of 18)	intron (NM_013381, intron 2 of 18)	-73016	NR_026836	283392	Hs.363603	NM_001025457	ENSG00000236333	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
0.34328-21	chr12	122884865	122885364	+	0	NA	TTS (NR_045382)	TTS (NR_045382)	5025	NR_045382	100507066	Hs.624253	NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
0.47692-21	chrX	109246063	109246562	+	0	NA	promoter-TSS (NM_032227)	promoter-TSS (NM_032227)	-30	NM_032227	84187	Hs.496572	NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
1.39662-7	chr19	8009001	8009500	+	0	NA	promoter-TSS (NM_006351)	promoter-TSS (NM_006351)	-542	NM_006351	10469	Hs.465784	NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
0.34328-15	chr1	26101577	26102076	+	0	NA	intron (NM_020379, intron 8 of 11)	intron (NM_020379, intron 8 of 11)	-24841	NM_020451	57190	Hs.323396	NM_020451	ENSG00000162430	SELENON	CFTD|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
0.0921731-12	chr16	89764206	89764705	+	0	NA	exon (NM_152339, exon 3 of 3)	exon (NM_152339, exon 3 of 3)	3666	NM_152339	124044	Hs.374556	NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
4.7237-11	chr2	219725547	219726046	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	1250	NM_006522	7475	Hs.29764	NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
1.78486-4	chr2	220173416	220173915	+	0	NA	promoter-TSS (NM_001199764)	promoter-TSS (NM_001199764)	64	NM_001199764	5798	Hs.89655	NM_002846	ENSG00000054356	PTPRN	IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N	protein tyrosine phosphatase, receptor type N	protein-coding
16.3827-3	chr13	50914586	50915085	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	168681	NR_002183	145165	Hs.511834	NM_153290		ST13P4	FAM10A4|FAM10A4P	suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4	pseudo
2.91579-5	chr6	70331988	70332487	+	0	NA	Intergenic	LTR9|LTR|ERV1	174812	NM_018368	55788	Hs.271643	NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
7.61954-19	chr11	112854547	112855046	+	0	NA	intron (NM_001076682, intron 2 of 19)	L1MA9|LINE|L1	-20614	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
0.204516-6	chr12	53273214	53273713	+	0	NA	Intergenic	CpG	25405	NM_002273	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
0.5061-17	chr6	45345546	45346045	+	0	NA	promoter-TSS (NM_001261823)	promoter-TSS (NM_001261823)	-7	NM_181356	8464	Hs.368325	NM_003599	ENSG00000196284	SUPT3H	SPT3|SPT3L	SPT3 homolog, SAGA and STAGA complex component	protein-coding
1.24939-17	chr7	143824738	143825237	+	0	NA	Intergenic	Intergenic	-1219	NM_001001659	135941	Hs.534547	NM_001001659	ENSG00000221938	OR2A14	OR2A14P|OR2A6|OST182	olfactory receptor family 2 subfamily A member 14	protein-coding
28.041	chr2	234369492	234369991	+	0	NA	intron (NM_003648, intron 23 of 28)	intron (NM_003648, intron 23 of 28)	72941	NM_003648	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
5.39102-11	chr1	36554293	36554792	+	0	NA	promoter-TSS (NM_017825)	promoter-TSS (NM_017825)	89	NM_017825	54936	Hs.18021	NM_017825	ENSG00000116863	ADPRHL2	ARH3	ADP-ribosylhydrolase like 2	protein-coding
0.296531-96	chr7	99698854	99699353	+	0	NA	promoter-TSS (NM_182776)	promoter-TSS (NM_182776)	-27	NM_004722	9179	Hs.632317	NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 mu 1 subunit	protein-coding
0.305841-25	chr15	76632471	76632970	+	0	NA	exon (NM_145805, exon 4 of 6)	exon (NM_145805, exon 4 of 6)	3655	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
14.0894-3	chr16	54227482	54227981	+	0	NA	Intergenic	Intergenic	77060	NR_126340	100996338	Hs.232014	NR_126340		LOC100996338	-	uncharacterized LOC100996338	ncRNA
6.38272-14	chr15	92410026	92410525	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	12745	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
0.788339-20	chr15	92399585	92400084	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	2304	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
1.70053-3	chr7	139930185	139930684	+	0	NA	Intergenic	(CCGCG)n|Simple_repeat|Simple_repeat	53373	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
7.18967-2	chr4	146803086	146803585	+	0	NA	intron (NM_001306215, intron 4 of 14)	intron (NM_001306215, intron 4 of 14)	56777	NM_001306215	152485	Hs.133916	NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
14.8945-5	chr10	81947183	81947682	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	16815	NM_001278408	311	Hs.530291	NM_001157	ENSG00000122359	ANXA11	ANX11|CAP50	annexin A11	protein-coding
3.0103-7	chr17	27324763	27325262	+	0	NA	intron (NM_001290202, intron 1 of 16)	intron (NM_001290202, intron 1 of 16)	8069	NM_001098635	124925	Hs.21837	NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
0.888424-8	chr2	198033280	198033779	+	0	NA	intron (NM_153697, intron 2 of 9)	L2b|LINE|L2	-29186	NR_135584	101927596		NR_135584	ENSG00000231621	LOC101927596	-	uncharacterized LOC101927596	ncRNA
6.9037-3	chr12	43980449	43980948	+	0	NA	Intergenic	LTR88c|LTR|Gypsy?	-34974	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif 20	protein-coding
2.97569	chrX	150102902	150103401	+	0	NA	Intergenic	Intergenic	-35862	NM_031462	83692	Hs.522805	NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding
2.74088-10	chr8	62052127	62052626	+	0	NA	Intergenic	CpG	-148149	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
0.34328-26	chr6	100853982	100854481	+	0	NA	intron (NM_005068, intron 9 of 10)	intron (NM_005068, intron 9 of 10)	57320	NM_005068	6492	Hs.520293	NM_005068	ENSG00000112246	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
1.37869-26	chr11	65082896	65083395	+	0	NA	intron (NM_006779, intron 1 of 1)	CpG	856	NM_006779	10435	Hs.343380	NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
7.54487-10	chr8	94457192	94457691	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	255220	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
1.51195-20	chr5	164024265	164024764	+	0	NA	Intergenic	L1M5|LINE|L1	127229	NR_105065	102546299	Hs.437730	NR_105065	ENSG00000241956	LOC102546299	-	uncharacterized LOC102546299	ncRNA
0.070049-23	chr9	70859293	70859792	+	0	NA	intron (NM_201453, intron 1 of 14)	L1M5|LINE|L1	2681	NM_201453	445571	Hs.645337	NM_201453	ENSG00000196873	CBWD3	bA561O23.1	COBW domain containing 3	protein-coding
0.0436481-7	chr7	50355245	50355744	+	0	NA	intron (NM_001291838, intron 1 of 6)	intron (NM_001291838, intron 1 of 6)	-3150	NM_001291840	10320	Hs.435949	NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
0.400052-35	chr18	30122007	30122506	+	0	NA	Intergenic	Intergenic	30630	NR_003558	441818	Hs.549773	NR_003558	ENSG00000260389	WBP11P1	HsT3017	WW domain binding protein 11 pseudogene 1	pseudo
0.0392635-41	chr3	194980300	194980799	+	0	NA	intron (NM_152531, intron 1 of 3)	CpG	11346	NM_152531	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
8.99629-8	chr19	30560314	30560813	+	0	NA	Intergenic	Intergenic	127417	NM_003796	8725	Hs.466391	NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1, prefoldin like chaperone	protein-coding
1.88425-19	chr19	54676622	54677121	+	0	NA	promoter-TSS (NM_001145303)	promoter-TSS (NM_001145303)	73	NM_144686	147798	Hs.355126	NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
6.94649-6	chr11	68924601	68925100	+	0	NA	intron (NR_104161, intron 2 of 2)	CpG	14180	NR_104161	338694	Hs.564235	NR_104161	ENSG00000261070	LOC338694	-	uncharacterized LOC338694	ncRNA
0.11441-19	chr6	35744114	35744613	+	0	NA	promoter-TSS (NR_104469)	promoter-TSS (NR_104469)	-8	NM_001286550	389383	Hs.259563	NM_207409	ENSG00000196748	CLPSL2	AAAL3045|C6orf126|UNQ3045|dJ510O8.5	colipase like 2	protein-coding
0.589858-31	chrX	63424793	63425292	+	0	NA	intron (NM_152424, intron 1 of 1)	CpG	582	NM_152424	139285	Hs.314225	NM_152424	ENSG00000184675	AMER1	FAM123B|OSCS|WTX	APC membrane recruitment protein 1	protein-coding
20.5552	chr15	92602464	92602963	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	205183	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
0.315171-20	chr4	9803441	9804218	+	0	NA	Intergenic	Intergenic	20571	NM_000798	1816	Hs.380681	NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
0.629839-10	chr19	18391072	18391571	+	0	NA	exon (NM_001286968, exon 1 of 1)	exon (NM_001286968, exon 1 of 1)	1145	NM_001286968	3727	Hs.2780	NM_005354	ENSG00000130522	JUND	AP-1	JunD proto-oncogene, AP-1 transcription factor subunit	protein-coding
0.925886-14	chr19	36036185	36036684	+	0	NA	promoter-TSS (NM_032635)	promoter-TSS (NM_032635)	-68	NM_032635	10430	Hs.9234	NM_032635	ENSG00000105677	TMEM147	NIFIE14	transmembrane protein 147	protein-coding
4.19075-6	chr6	74405405	74405904	+	0	NA	promoter-TSS (NM_001159587)	promoter-TSS (NM_001159587)	-154	NM_133493	135228	Hs.399891	NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
10.5502	chr7	116708689	116709188	+	0	NA	intron (NM_018412, intron 1 of 14)	intron (NM_018412, intron 1 of 14)	21897	NR_109980	93654	Hs.628891	NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
2.97569-12	chr7	32768521	32769020	+	0	NA	non-coding (NR_003502, exon 1 of 1)	non-coding (NR_003502, exon 1 of 1)	1208	NR_003502	441208	Hs.510645	NM_001013723		ZNRF2P1	-	zinc and ring finger 2 pseudogene 1	pseudo
6.45892-5	chr8	57594593	57595092	+	0	NA	Intergenic	Intergenic	-122460	NR_038236	100507632	Hs.583755	NR_038236	ENSG00000246430	LINC00968	-	long intergenic non-protein coding RNA 968	ncRNA
6.9897-9	chr8	42793860	42794359	+	0	NA	intron (NM_032410, intron 4 of 21)	SVA_D|Other|Other	42076	NM_032410	84376	Hs.162852	NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
3.22393-27	chr11	72953310	72953809	+	0	NA	TTS (NM_002564)	TTS (NM_002564)	-21991	NM_176796	5031	Hs.16362	NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
1.33122	chr4	38321356	38321855	+	0	NA	Intergenic	Intergenic	200030	NM_001253915	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
0.952845-8	chr15	63414085	63414584	+	0	NA	exon (NM_171846, exon 1 of 5)	exon (NM_171846, exon 1 of 5)	335	NM_001288585	114294	Hs.410388	NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
0.315171-5	chr8	142378071	142378570	+	0	NA	promoter-TSS (NM_005293)	promoter-TSS (NM_005293)	-955	NM_005293	2843	Hs.152432	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
2.27678	chr14	75642982	75643481	+	0	NA	exon (NM_006827, exon 1 of 5)	exon (NM_006827, exon 1 of 5)	118	NM_006827	10972	Hs.74137	NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
8.76148-8	chr11	72498223	72498722	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	3897	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
3.03644-3	chrX	49680130	49680629	+	0	NA	Intergenic	Intergenic	-6846	NM_001127899	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
3.34419-6	chr2	113691907	113692406	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	19386	NM_173205	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
0.496351-29	chr16	57095085	57095584	+	0	NA	intron (NM_001330552, intron 29 of 47)	intron (NM_001330552, intron 29 of 47)	-31121	NM_152727	221184	Hs.339809	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
5.76754-4	chr8	11801064	11801563	+	0	NA	Intergenic	Intergenic	30795	NM_001033018	613210	Hs.558285	NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin beta 136	protein-coding
0.680339-2	chr7	44151314	44151813	+	0	NA	exon (NM_001129, exon 16 of 21)	exon (NM_001129, exon 16 of 21)	1115	NR_039792	100616346		NR_039792	ENSG00000106624	MIR4649	mir-4649	microRNA 4649	ncRNA
0.305841-26	chr20	8024255	8024754	+	0	NA	Intergenic	Intergenic	-24028	NM_021156	56255	Hs.169358	NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
1.67491-12	chr17	61554337	61554836	+	0	NA	exon (NM_000789, exon 1 of 25)	exon (NM_000789, exon 1 of 25)	164	NM_000789	1636	Hs.298469	NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1	angiotensin I converting enzyme	protein-coding
35.0169-2	chr3	175657967	175658466	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-164095	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
1.42668-14	chr19	12833294	12833793	+	0	NA	promoter-TSS (NM_001136196)	promoter-TSS (NM_001136196)	-81	NM_001136196	30000	Hs.416049	NM_013433	ENSG00000105576	TNPO2	IPO3|KPNB2B|TRN2	transportin 2	protein-coding
0.79355-8	chr12	59990599	59991098	+	0	NA	intron (NM_001270622, intron 1 of 5)	intron (NM_001270622, intron 1 of 5)	1027	NM_001270622	9194	Hs.88156	NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
1.29596-6	chr2	220340857	220341356	+	0	NA	intron (NM_005876, intron 18 of 40)	MER102b|DNA|hAT-Charlie	15572	NM_001173476	10290	Hs.21639	NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|SPEGalpha|SPEGbeta	SPEG complex locus	protein-coding
7.14443-4	chr9	86601884	86602383	+	0	NA	intron (NM_024945, intron 1 of 2)	AluSx|SINE|Alu	-6436	NM_002140	3190	Hs.522257	NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
1.64944-19	chr15	31572100	31572599	+	0	NA	Intergenic	Intergenic	-46709	NM_015995	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
0.0744648-33	chrX	9999630	10000129	+	0	NA	intron (NM_015691, intron 1 of 22)	MER20|DNA|hAT-Charlie	16084	NM_015691	55841	Hs.527524	NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
0.565055-4	chr11	63828389	63828888	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	-42724	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
3.93619-4	chr4	154605113	154605612	+	0	NA	promoter-TSS (NM_001318795)	promoter-TSS (NM_001318795)	-42	NM_001318789	7097	Hs.519033	NM_003264	ENSG00000137462	TLR2	CD282|TIL4	toll like receptor 2	protein-coding
0.0568285-8	chr15	98503442	98504311	+	0	NA	promoter-TSS (NM_183376)	promoter-TSS (NM_183376)	-57	NM_183376	91947	Hs.6093	NM_183376	ENSG00000140450	ARRDC4	-	arrestin domain containing 4	protein-coding
2.04815-10	chr5	132485008	132485507	+	0	NA	Intergenic	Intergenic	97595	NM_002154	3308	Hs.90093	NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
7.87812-19	chr8	82643508	82644007	+	0	NA	promoter-TSS (NM_152284)	promoter-TSS (NM_152284)	-931	NM_152284	92421	Hs.183861	NM_152284	ENSG00000164695	CHMP4C	SNF7-3|Shax3|VPS32C	charged multivesicular body protein 4C	protein-coding
3.56547-6	chr14	76390560	76391059	+	0	NA	intron (NM_015072, intron 31 of 31)	SVA_D|Other|Other	57556	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
23.4969-3	chr2	50675609	50676108	+	0	NA	intron (NM_001135659, intron 18 of 23)	intron (NM_001135659, intron 18 of 23)	-100964	NM_138735	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
12.1538-2	chr18	33877015	33877514	+	0	NA	promoter-TSS (NM_001281739)	promoter-TSS (NM_001281739)	-395	NM_001281739	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
2.15383	chr2	152614249	152614748	+	0	NA	Intergenic	Intergenic	-23497	NM_001164508	4703	Hs.588655	NM_004543	ENSG00000183091	NEB	NEB177D|NEM2	nebulin	protein-coding
5.76754-3	chr1	44412064	44412563	+	0	NA	promoter-TSS (NM_014652)	promoter-TSS (NM_014652)	-165	NM_014652	9670	Hs.158497	NM_014652	ENSG00000117408	IPO13	IMP13|KAP13|LGL2|RANBP13	importin 13	protein-coding
17.122-2	chr6	97065899	97066398	+	0	NA	3' UTR (NM_020482, exon 7 of 7)	3' UTR (NM_020482, exon 7 of 7)	55147	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
8.50781-7	chr7	25817535	25818034	+	0	NA	Intergenic	Intergenic	171822	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
0.824945-3	chr3	150126932	150127431	+	0	NA	non-coding (NR_130136, exon 1 of 5)	non-coding (NR_130136, exon 1 of 5)	1059	NM_014779	9819	Hs.722470	NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
2.32844-11	chr7	145675786	145676285	+	0	NA	Intergenic	Intergenic	-137418	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
8.60121-9	chr4	36245508	36246442	+	0	NA	promoter-TSS (NM_015230)	promoter-TSS (NM_015230)	4	NM_015230	116984	Hs.479451	NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
2.86509	chr15	50474151	50475088	+	0	NA	5' UTR (NM_001159629, exon 1 of 9)	5' UTR (NM_001159629, exon 1 of 9)	226	NM_001159629	11001	Hs.11729	NM_003645	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	solute carrier family 27 member 2	protein-coding
1.09579-3	chr2	106573972	106574471	+	0	NA	Intergenic	Intergenic	106017	NM_001004720	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
3.68556-5	chr8	80680516	80681015	+	0	NA	promoter-TSS (NM_012258)	promoter-TSS (NM_012258)	388	NR_125410	101927067	Hs.144030	NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
0.584886-4	chr1	202926695	202927194	+	0	NA	intron (NM_001290629, intron 1 of 8)	CpG	168	NM_001290553	51094	Hs.5298	NM_015999	ENSG00000159346	ADIPOR1	ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
4.80172-5	chr1	40218323	40218822	+	0	NA	intron (NR_036544, intron 8 of 9)	intron (NR_036544, intron 8 of 9)	14055	NM_001319293	10450	Hs.524690	NM_006112	ENSG00000084072	PPIE	CYP-33|CYP33	peptidylprolyl isomerase E	protein-coding
10.0524-2	chr8	110656799	110657298	+	0	NA	promoter-TSS (NM_001099755)	promoter-TSS (NM_001099755)	3	NM_001099755	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
1.57391-12	chrX	89829516	89830015	+	0	NA	Intergenic	L1PA10|LINE|L1	652825	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	TGFB induced factor homeobox 2 like, X-linked	protein-coding
4.36519	chr4	68636098	68636597	+	0	NA	Intergenic	Intergenic	-14543	NM_000406	2798	Hs.407587	NM_000406	ENSG00000109163	GNRHR	GNRHR1|GRHR|HH7|LHRHR|LRHR	gonadotropin releasing hormone receptor	protein-coding
0.594835-9	chrX	24483029	24483528	+	0	NA	promoter-TSS (NM_005391)	promoter-TSS (NM_005391)	-66	NM_001142386	5165	Hs.296031	NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
0.273344-16	chr2	214015353	214015852	+	0	NA	promoter-TSS (NM_016260)	promoter-TSS (NM_016260)	-544	NM_016260	22807	Hs.604950	NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
0.0130484-31	chr20	30102047	30102546	+	0	NA	promoter-TSS (NM_178581)	promoter-TSS (NM_178581)	83	NM_030789	81502	Hs.373741	NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
5.67031-8	chr6	157694158	157694657	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	50884	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
45.1145	chr7	81305782	81306281	+	0	NA	intron (NR_126025, intron 1 of 10)	intron (NR_126025, intron 1 of 10)	14691	NR_126025	100128317	Hs.571267	NR_126025	ENSG00000233491	LOC100128317	-	uncharacterized LOC100128317	ncRNA
0.163737-32	chr1	63793108	63793607	+	0	NA	promoter-TSS (NR_106716)	promoter-TSS (NR_106716)	-702	NR_106716	102464823		NR_106716	ENSG00000275836	MIR6068	hsa-mir-6068	microRNA 6068	ncRNA
1.50581-7	chr1	60437123	60437622	+	0	NA	Intergenic	Intergenic	-44902	NR_134981	1573	Hs.152096	NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
7.90485-5	chr9	128002975	128003474	+	0	NA	intron (NM_005347, intron 1 of 7)	CpG-27022	442	NM_005347	3309	Hs.743241	NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n|MIF2	heat shock protein family A (Hsp70) member 5	protein-coding
1.63676-9	chr5	148520810	148521309	+	0	NA	promoter-TSS (NM_001301028)	promoter-TSS (NM_001301028)	49	NM_001301027	22885	Hs.49688	NM_014945	ENSG00000173210	ABLIM3	HMFN1661	actin binding LIM protein family member 3	protein-coding
0.574959-16	chr7	83043097	83043596	+	0	NA	intron (NM_001178129, intron 5 of 16)	intron (NM_001178129, intron 5 of 16)	227401	NM_001178129	9723	Hs.528721	NM_012431	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	semaphorin 3E	protein-coding
1.99283-3	chr4	6691727	6692226	+	0	NA	Intergenic	Intergenic	-3590	NM_005980	6286	Hs.2962	NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
2.03426-4	chr11	114031620	114032119	+	0	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	100581	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
1.37272-2	chr9	98272974	98274025	+	0	NA	intron (NM_001083603, intron 1 of 23)	intron (NM_001083603, intron 1 of 23)	-2668	NM_000264	5727	Hs.494538	NM_000264	ENSG00000185920	PTCH1	BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11	patched 1	protein-coding
15.9688-6	chr21	37173641	37174140	+	0	NA	Intergenic	L1PBa1|LINE|L1	80877	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
1.54282	chr21	41390811	41391310	+	0	NA	intron (NM_001389, intron 32 of 32)	intron (NM_001389, intron 32 of 32)	151713	NM_006198	5121	Hs.80296	NM_006198	ENSG00000183036	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
16.2525-2	chr9	1032112	1032611	+	0	NA	Intergenic	Intergenic	-15782	NR_110643	102800446	Hs.171043	NR_110643		LINC01230	TCONS_00015639|linc-DMRT2|lnc-DRMT2	long intergenic non-protein coding RNA 1230	ncRNA
2.44888-4	chr16	9228519	9229018	+	0	NA	Intergenic	Intergenic	43231	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
1.89767-7	chr2	10442474	10442973	+	0	NA	promoter-TSS (NM_002149)	promoter-TSS (NM_002149)	-307	NM_002149	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
3.31614-4	chr22	42772629	42773128	+	0	NA	Intergenic	Intergenic	-7664	NR_120595	102723775	Hs.335413	NR_120595	ENSG00000229891	LINC01315	lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
1.03474-2	chr5	126366605	126367104	+	0	NA	promoter-TSS (NM_178450)	promoter-TSS (NM_178450)	-354	NM_178450	115123	Hs.132441	NM_178450	ENSG00000173926	MARCH3	MARCH-III|RNF173	membrane associated ring-CH-type finger 3	protein-coding
12.4413-3	chr5	134902279	134902778	+	0	NA	Intergenic	Intergenic	12441	NM_004887	9547	Hs.483444	NM_004887	ENSG00000145824	CXCL14	BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14	C-X-C motif chemokine ligand 14	protein-coding
3.99027-13	chr2	132904281	132904780	+	0	NA	TTS (NR_027019)	TTS (NR_027019)	14995	NR_027019	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B like	pseudo
10.2045-2	chr5	176151397	176151896	+	0	NA	Intergenic	L1MC4a|LINE|L1	-18560	NR_108030	102577424	Hs.349025	NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
4.53457	chr6	147030314	147030813	+	0	NA	intron (NM_024694, intron 13 of 35)	L1MA8|LINE|L1	94397	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
0.291884-14	chr1	120835863	120836362	+	0	NA	Intergenic	CpG	-2893	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72 member B	protein-coding
5.81699-7	chr11	118868888	118869387	+	0	NA	intron (NR_104051, intron 1 of 10)	CpG	294	NR_104051	338657	Hs.534613	NM_198489	ENSG00000186166	CCDC84	DLNB14	coiled-coil domain containing 84	protein-coding
8.21023-12	chr3	83668621	83669120	+	0	NA	Intergenic	Intergenic	1249856	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
0.070049-9	chr2	85512504	85513003	+	0	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	42666	NM_001206840	10618	Hs.593382	NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
12.9158	chr2	96628485	96628984	+	0	NA	intron (NM_001310154, intron 6 of 88)	intron (NM_001310154, intron 6 of 88)	29334	NM_001310154	400986	Hs.646318	NM_001010914	ENSG00000174501	ANKRD36C	-	ankyrin repeat domain 36C	protein-coding
7.56962-21	chr4	106558877	106559376	+	0	NA	intron (NM_001242729, intron 5 of 13)	intron (NM_001242729, intron 5 of 13)	70755	NM_020395	57117	Hs.480454	NM_020395	ENSG00000138785	INTS12	INT12|PHF22|SBBI22	integrator complex subunit 12	protein-coding
1.91789-10	chr2	120981119	120981618	+	0	NA	promoter-TSS (NM_024121)	promoter-TSS (NM_024121)	-384	NM_024121	79134	Hs.376722	NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
0.177288-16	chr7	51068605	51069104	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-207695	NM_001001555	2887	Hs.164060	NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
1.33122-26	chr22	22237180	22237679	+	0	NA	Intergenic	SVA_D|Other|Other	-15459	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
1.02923-6	chr11	18727217	18727972	+	0	NA	exon (NM_173588, exon 22 of 23)	exon (NM_173588, exon 22 of 23)	7312	NM_153347	144110	Hs.502100	NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
9.95679-5	chr14	57476208	57476707	+	0	NA	Intergenic	Intergenic	196556	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
6.53647-4	chr2	85125514	85126013	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-7000	NM_021103	9168	Hs.446574	NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
5.31653-3	chr10	43600794	43601293	+	0	NA	intron (NM_020630, intron 4 of 18)	CpG-2739	28526	NM_020630	5979	Hs.350321	NM_000323	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
1.27844-16	chr8	145749910	145750409	+	0	NA	3' UTR (NM_001272036, exon 5 of 5)	3' UTR (NM_001272036, exon 5 of 5)	2257	NM_001024678	441381	Hs.740859	NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
4.698-7	chr6	34494886	34495385	+	0	NA	exon (NM_020804, exon 3 of 10)	exon (NM_020804, exon 3 of 10)	12486	NM_001199583	29993	Hs.520087	NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
0.920515-29	chr11	1784870	1785369	+	0	NA	5' UTR (NM_001909, exon 1 of 9)	5' UTR (NM_001909, exon 1 of 9)	103	NM_001909	1509	Hs.654447	NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
4.14539-9	chr14	96857583	96858082	+	0	NA	promoter-TSS (NM_152327)	promoter-TSS (NM_152327)	-616	NM_152327	122481	Hs.667462	NM_152327	ENSG00000140057	AK7	AK 7	adenylate kinase 7	protein-coding
15.4668	chr2	72240237	72240736	+	0	NA	Intergenic	Intergenic	134505	NM_019885	56603	Hs.91546	NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
0.00869459-21	chr3	68981557	68982056	+	0	NA	promoter-TSS (NM_001005527)	promoter-TSS (NM_001005527)	-45	NM_001005527	151647	Hs.187873	NM_182522	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	family with sequence similarity 19 member A4, C-C motif chemokine like	protein-coding
1.39662-32	chr11	91958206	91958705	+	0	NA	Intergenic	CpG	-126807	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding
5.33132-14	chr3	5272640	5273139	+	0	NA	Intergenic	Intergenic	19051	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
0.245682-37	chr11	61405758	61406257	+	0	NA	non-coding (NR_002775, exon 5 of 5)	non-coding (NR_002775, exon 5 of 5)	23499	NR_002775	113157	Hs.502733	NR_002775	ENSG00000243742	RPLP0P2	RPLP0L2|RPLP0_3_1146	ribosomal protein lateral stalk subunit P0 pseudogene 2	pseudo
8.26814-13	chr7	69265459	69265958	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	201803	NM_015570	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
10-4	chr18	74753971	74754470	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-25165	NM_001025090	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
0.218195-12	chr14	36560243	36560742	+	0	NA	intron (NR_073454, intron 1 of 2)	MLT1J|LTR|ERVL-MaLR	20859	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
0.93665-9	chr11	43596970	43597469	+	0	NA	Intergenic	CpG	-5725	NR_029697	406918		NR_029697	ENSG00000199077	MIR129-2	MIR-129b|MIRN129-2|mir-129-2	microRNA 129-2	ncRNA
11.2321	chr4	17782812	17783311	+	0	NA	promoter-TSS (NM_015688)	promoter-TSS (NM_015688)	74	NM_015688	27146	Hs.744951	NM_015688	ENSG00000047662	FAM184B	-	family with sequence similarity 184 member B	protein-coding
5.71865-4	chr10	77161879	77162378	+	0	NA	promoter-TSS (NR_120651)	promoter-TSS (NR_120651)	-476	NM_032772	84858	Hs.195710	NM_032772	ENSG00000165655	ZNF503	NOLZ-1|NOLZ1|Nlz2	zinc finger protein 503	protein-coding
12.6761-6	chr18	25757829	25758597	+	0	NA	promoter-TSS (NM_001792)	promoter-TSS (NM_001792)	-803	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
0.700704-7	chr16	3070646	3071145	+	0	NA	intron (NM_016639, intron 1 of 3)	CpG	582	NM_016639	51330	Hs.355899	NM_016639	ENSG00000006327	TNFRSF12A	CD266|FN14|TWEAKR	TNF receptor superfamily member 12A	protein-coding
0.76756-4	chr1	224691016	224691515	+	0	NA	intron (NM_001322302, intron 2 of 6)	intron (NM_001322302, intron 2 of 6)	68668	NR_136296	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
5.52842	chr6	158254461	158254960	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	10507	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
2.35077-14	chr3	141027437	141027936	+	0	NA	Intergenic	Intergenic	-15369	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
1.04025-3	chr3	194023984	194024483	+	0	NA	intron (NR_024480, intron 1 of 2)	intron (NR_024480, intron 1 of 2)	6360	NR_024480	100131551	Hs.128066	NR_024480	ENSG00000214145	LINC00887	HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
31.2726	chr4	36694136	36694635	+	0	NA	Intergenic	Intergenic	-266335	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
4.01209	chr19	2475817	2476316	+	0	NA	promoter-TSS (NM_015675)	promoter-TSS (NM_015675)	-57	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
24.034-5	chr7	128395775	128396274	+	0	NA	intron (NM_001130674, intron 3 of 6)	intron (NM_001130674, intron 3 of 6)	16678	NM_001219	813	Hs.7753	NM_001219	ENSG00000128595	CALU	-	calumenin	protein-coding
0.218195-10	chr12	125477826	125478325	+	0	NA	promoter-TSS (NM_080626)	promoter-TSS (NM_080626)	-119	NM_080626	140707	Hs.596464	NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
1.37869-39	chrX	83471348	83471847	+	0	NA	Intergenic	Intergenic	9239	NR_031690	100302191		NR_031690	ENSG00000221494	MIR548I4	MIR548I-4|MIRN548I4|hsa-mir-548i-4	microRNA 548i-4	ncRNA
0.433514-3	chr6	74160970	74161469	+	0	NA	intron (NM_138441, intron 1 of 4)	CpG	824	NM_138441	115004	Hs.658405	NM_138441	ENSG00000164430	MB21D1	C6orf150|cGAS|h-cGAS	Mab-21 domain containing 1	protein-coding
0.584886-21	chr5	5497224	5497723	+	0	NA	Intergenic	Intergenic	74687	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
4.13413-7	chr11	102979671	102980170	+	0	NA	promoter-TSS (NM_001080463)	promoter-TSS (NM_001080463)	-240	NM_001377	79659	Hs.503721	NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
0.409586-39	chr13	31571721	31572220	+	0	NA	Intergenic	Intergenic	65136	NM_152325	122046	Hs.124463	NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
2.77366-4	chr14	74181069	74181568	+	0	NA	promoter-TSS (NM_006029)	promoter-TSS (NM_006029)	-190	NM_006029	9240	Hs.194709	NM_006029	ENSG00000176903	PNMA1	MA1	paraneoplastic Ma antigen 1	protein-coding
1.75874-6	chr17	43827264	43827763	+	0	NA	intron (NM_001303016, intron 3 of 12)	intron (NM_001303016, intron 3 of 12)	-34133	NM_001145148	1394	Hs.417628	NM_004382	ENSG00000120088	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRHR|CRHR1L	corticotropin releasing hormone receptor 1	protein-coding
25.4212-2	chr17	60770996	60771495	+	0	NA	TTS (NM_006039)	TTS (NM_006039)	66483	NM_006039	9902	Hs.7835	NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C type 2	protein-coding
3.06273-2	chr12	118406733	118407232	+	0	NA	promoter-TSS (NM_173598)	promoter-TSS (NM_173598)	-954	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
4.31798-14	chr2	127807857	127808356	+	0	NA	intron (NM_139351, intron 11 of 12)	intron (NM_139351, intron 11 of 12)	31535	NM_001320634	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
1.31944-12	chr12	125035738	125036600	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	15841	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
2.46417-4	chr12	57635285	57635784	+	0	NA	Intergenic	CpG	-1059	NM_020142	56901	Hs.75069	NM_020142	ENSG00000185633	NDUFA4L2	NUOMS	NDUFA4, mitochondrial complex associated like 2	protein-coding
13.536-5	chrX	68517296	68517795	+	0	NA	Intergenic	Intergenic	118145	NR_103715	100996279		NR_103715	ENSG00000215162	LINC00269	CXorf62|NCRNA00269	long intergenic non-protein coding RNA 269	ncRNA
2.95849-6	chr19	36446747	36447246	+	0	NA	intron (NR_136525, intron 1 of 4)	L1MB8|LINE|L1	8979	NR_136525	105372383	Hs.641592	NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
8.26814-10	chr10	87307716	87308215	+	0	NA	Intergenic	L1ME1|LINE|L1	-29523	NR_038986	100507470	Hs.585483	NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
6.8403-3	chr9	11809338	11809837	+	0	NA	Intergenic	L1PA15|LINE|L1	-883799	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase related protein 1	protein-coding
0.856568-30	chr1	155139600	155140099	+	0	NA	Intergenic	Intergenic	5955	NM_173852	200185	Hs.516671	NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
12.6761-4	chr8	61495390	61495889	+	0	NA	intron (NM_001242644, intron 2 of 6)	intron (NM_001242644, intron 2 of 6)	66170	NM_002865	5862	Hs.369017	NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
6.67562-3	chr2	225831395	225831894	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-19862	NM_001290263	55619	Hs.46578	NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
1.70696-11	chr9	23537435	23537934	+	0	NA	intron (NR_121602, intron 17 of 27)	intron (NR_121602, intron 17 of 27)	134713	NR_121602	101929563	Hs.533220	NR_121602		LOC101929563	-	uncharacterized LOC101929563	ncRNA
7.98603-2	chr7	111771039	111771538	+	0	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	75174	NM_014705	9732	Hs.654652	NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
3.20572-9	chr6	46620977	46621476	+	0	NA	promoter-TSS (NM_001278738)	promoter-TSS (NM_001278738)	574	NM_001204052	9481	Hs.40510	NM_004277	ENSG00000153291	SLC25A27	UCP4	solute carrier family 25 member 27	protein-coding
13.1876	chr1	163665002	163665501	+	0	NA	Intergenic	Intergenic	-272270	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo
0.32452-11	chr17	30469314	30469813	+	0	NA	promoter-TSS (NM_001033566)	promoter-TSS (NM_001033566)	90	NM_001033566	55288	Hs.655325	NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
0.530567-16	chr2	30447831	30448330	+	0	NA	Intergenic	Intergenic	-6317	NM_030915	81606	Hs.567598	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
4.57175-10	chr13	77459167	77459666	+	0	NA	exon (NM_138444, exon 1 of 1)	exon (NM_138444, exon 1 of 1)	1124	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
23.7366-2	chr6	58163630	58164129	+	0	NA	Intergenic	L1MEf|LINE|L1	99328	NR_133000	375513	Hs.561539	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L	glucuronidase, beta pseudogene 4	pseudo
0.163737-28	chr2	205118773	205119272	+	0	NA	Intergenic	MIR|SINE|MIR	-291494	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
1.88425	chr9	140353605	140354104	+	0	NA	promoter-TSS (NM_001130969)	promoter-TSS (NM_001130969)	-68	NM_001130970	26012	Hs.455336	NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
1.82435-23	chr16	47922036	47922535	+	0	NA	intron (NR_110650, intron 4 of 5)	intron (NR_110650, intron 4 of 5)	-1244	NR_110649	100507534	Hs.407601	NR_110649	ENSG00000261325	LOC100507534	-	uncharacterized LOC100507534	ncRNA
0.310503-9	chr17	17584422	17584921	+	0	NA	promoter-TSS (NM_030665)	promoter-TSS (NM_030665)	-116	NM_030665	10743	Hs.655395	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
1.49967-9	chr14	23356385	23356884	+	0	NA	3' UTR (NM_173527, exon 5 of 5)	3' UTR (NM_173527, exon 5 of 5)	4202	NM_173527	161253	Hs.444911	NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
3.29754-15	chr14	85937990	85938489	+	0	NA	Intergenic	Intergenic	-58130	NM_001346146	23768	Hs.533710	NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
4.12289-2	chrX	127341239	127341738	+	0	NA	Intergenic	L1PB1|LINE|L1	-155106	NM_138289	139741	Hs.680125	NM_138289	ENSG00000123165	ACTRT1	AIP1|ARIP1|ARPT1|HSD27	actin related protein T1	protein-coding
2.82329-11	chr15	65693638	65694137	+	0	NA	intron (NM_020962, intron 4 of 19)	intron (NM_020962, intron 4 of 19)	21523	NM_020962	57722	Hs.458607	NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	immunoglobulin superfamily DCC subclass member 4	protein-coding
4.19075-12	chrX	13941911	13942410	+	0	NA	intron (NM_001318729, intron 1 of 6)	intron (NM_001318729, intron 1 of 6)	14783	NM_001001994	2824	Hs.495710	NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
0.141246-10	chr17	5487746	5488245	+	0	NA	promoter-TSS (NM_033007)	promoter-TSS (NM_033007)	-163	NM_033007	22861	Hs.652273	NM_014922	ENSG00000091592	NLRP1	CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
1.89096-12	chr19	38021154	38021653	+	0	NA	intron (NM_001013659, intron 5 of 7)	LTR5_Hs|LTR|ERVK	-18448	NR_038248	100507433	Hs.121283	NR_038247	ENSG00000267470	ZNF571-AS1	-	ZNF571 antisense RNA 1	ncRNA
0.985417-2	chr1	156083816	156084315	+	0	NA	promoter-TSS (NM_001282626)	promoter-TSS (NM_001282626)	-396	NM_005572	4000	Hs.594444	NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
0.150229-10	chr3	42864284	42864783	+	0	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	13569	NM_001296	1238	Hs.146346	NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
13.4104-3	chr13	39701029	39701528	+	0	NA	Intergenic	Intergenic	88830	NM_001017370	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
1.24939-4	chr15	79056658	79057157	+	0	NA	exon (NM_014272, exon 20 of 24)	exon (NM_014272, exon 20 of 24)	12528	NR_036495	646938	Hs.449783	NR_036495	ENSG00000238166	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
0.254883-31	chrX	17756179	17756678	+	0	NA	intron (NM_001037536, intron 1 of 5)	CpG	859	NM_001037536	6322	Hs.109655	NM_006746	ENSG00000047634	SCML1	-	sex comb on midleg-like 1 (Drosophila)	protein-coding
4.19075-19	chr1	110732839	110733338	+	0	NA	intron (NM_001010898, intron 6 of 11)	intron (NM_001010898, intron 6 of 11)	19521	NR_046546	100873974	Hs.130515	NR_046546		KCNC4-AS1	-	KCNC4 antisense RNA 1 (head to head)	ncRNA
4.81486-12	chr1	9599155	9599654	+	0	NA	promoter-TSS (NM_032315)	promoter-TSS (NM_032315)	-124	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
8.26814-16	chr5	34440757	34441256	+	0	NA	Intergenic	Intergenic	-215427	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.520764-15	chr2	189630207	189630706	+	0	NA	intron (NM_052952, intron 1 of 1)	intron (NM_052952, intron 1 of 1)	24375	NM_052952	116093	Hs.470892	NM_052952	ENSG00000174325	DIRC1	-	disrupted in renal carcinoma 1	protein-coding
0.809219-18	chr3	134204981	134205480	+	0	NA	promoter-TSS (NM_015391)	promoter-TSS (NM_015391)	183	NM_025180	80254	Hs.443301	NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
14.7886	chr13	100578617	100579116	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	30553	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA
14.0894	chr7	1188328	1188827	+	0	NA	Intergenic	AluJo|SINE|Alu	-10684	NM_001134396	84310	Hs.653258	NM_032350	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
5.51294	chr14	19934232	19934731	+	0	NA	Intergenic	Intergenic	-9147	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
3.22393-6	chr11	86380320	86380819	+	0	NA	intron (NM_001014811, intron 1 of 13)	THE1D|LTR|ERVL-MaLR	2671	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
1.31356-5	chr16	87979086	87979585	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-5703	NM_079837	54971	Hs.461705	NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
0.639892-10	chr5	123985431	123985930	+	0	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	95125	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
7.9588-4	chr2	240717804	240718303	+	0	NA	intron (NR_037808, intron 2 of 2)	SVA_D|Other|Other	33499	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
5.83359-22	chr19	49622175	49622674	+	0	NA	promoter-TSS (NR_103842)	promoter-TSS (NR_103842)	-27	NM_018111	55150	Hs.458310	NM_018111	ENSG00000221916	C19orf73	-	chromosome 19 open reading frame 73	protein-coding
2.04815-12	chr11	8040798	8041297	+	0	NA	Intergenic	CpG	-2991	NR_125366	103581031	Hs.249366	NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility candidate 23 (non-protein coding)	ncRNA
4.90797-8	chr1	150254340	150255013	+	0	NA	promoter-TSS (NM_001300838)	promoter-TSS (NM_001300838)	-267	NM_144697	148523	Hs.54680	NM_144697	ENSG00000159208	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding
2.64401-5	chr1	207068571	207069414	+	0	NA	Intergenic	Intergenic	-1796	NM_001185157	11009	Hs.58831	NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
11.4997-2	chr12	99462667	99463166	+	0	NA	intron (NM_152788, intron 16 of 25)	intron (NM_152788, intron 16 of 25)	-24221	NR_110095	101928937	Hs.555499	NR_110095	ENSG00000258039	LOC101928937	-	uncharacterized LOC101928937	ncRNA
1.91789-12	chr12	51419943	51420442	+	0	NA	promoter-TSS (NM_001174127)	promoter-TSS (NM_001174127)	7	NR_033421	4891	Hs.505545	NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
3.69572-8	chr8	144818597	144819096	+	0	NA	intron (NR_033849, intron 2 of 3)	intron (NR_033849, intron 2 of 3)	2536	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	onco-lncRNA-3	FAM83H antisense RNA 1 (head to head)	ncRNA
12.4718-7	chr6	36288166	36288665	+	0	NA	intron (NM_001010903, intron 10 of 11)	intron (NM_001010903, intron 10 of 11)	16247	NM_001010903	389384	Hs.162104	NM_001010903	ENSG00000189325	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
0.338583-4	chr13	79232951	79233450	+	0	NA	exon (NM_024546, exon 1 of 6)	exon (NM_024546, exon 1 of 6)	114	NM_024546	79596	Hs.567576	NM_024546	ENSG00000152193	RNF219	C13orf7	ring finger protein 219	protein-coding
0.520764-12	chr12	7033349	7033848	+	0	NA	promoter-TSS (NM_001007026)	promoter-TSS (NM_001007026)	-28	NM_001007026	1822	Hs.143766	NM_001940	ENSG00000111676	ATN1	B37|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
1.12383-10	chr2	121796315	121796814	+	0	NA	Intergenic	Intergenic	241697	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
2.76544-10	chr9	21789367	21789866	+	0	NA	Intergenic	Intergenic	-13019	NM_002451	4507	Hs.193268	NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
27.5449-2	chr8	58191353	58191852	+	0	NA	promoter-TSS (NR_026772)	promoter-TSS (NR_026772)	-500	NR_026772	26138	Hs.159352	NM_015643	ENSG00000215117	LINC00588	C8orf71	long intergenic non-protein coding RNA 588	ncRNA
1.20331-12	chr12	113623183	113623682	+	0	NA	promoter-TSS (NM_001111322)	promoter-TSS (NM_001111322)	101	NM_001286215	84934	Hs.524762	NM_032848	ENSG00000139405	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
0.287242-12	chr21	45209169	45209668	+	0	NA	promoter-TSS (NM_003683)	promoter-TSS (NM_003683)	0	NM_003683	8568	Hs.110757	NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
3.25139-6	chr5	81460670	81461169	+	0	NA	intron (NM_001131028, intron 5 of 8)	intron (NM_001131028, intron 5 of 8)	113316	NM_001025	6228	Hs.527193	NM_001025	ENSG00000186468	RPS23	S23	ribosomal protein S23	protein-coding
0.520764-13	chr17	71948800	71949299	+	0	NA	Intergenic	CpG	-124373	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
1.9044-11	chr22	38301924	38302423	+	0	NA	promoter-TSS (NM_033386)	promoter-TSS (NM_033386)	18	NM_033386	85377	Hs.517610	NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
15.0446	chr1	115856607	115857106	+	0	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	24001	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
2.99296-12	chr14	70992319	70992818	+	0	NA	intron (NM_003814, intron 1 of 1)	intron (NM_003814, intron 1 of 1)	9164	NM_003814	8748	Hs.177984	NM_003814	ENSG00000134007	ADAM20	-	ADAM metallopeptidase domain 20	protein-coding
0.0130484-9	chr16	72042276	72043064	+	0	NA	promoter-TSS (NM_001361)	promoter-TSS (NM_001361)	27	NM_001361	1723	Hs.654427	NM_001361	ENSG00000102967	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
0.888424-10	chr13	21347269	21348142	+	0	NA	intron (NM_001318939, intron 1 of 4)	CpG	392	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding
0.352691-3	chr16	58476483	58476982	+	0	NA	Intergenic	MER74A|LTR|ERVL	-20817	NM_020465	65009	Hs.322430	NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
0.273344-6	chr21	38935970	38936469	+	0	NA	Intergenic	CpG	143618	NM_130438	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
28.5078	chr12	86173432	86173931	+	0	NA	Intergenic	Intergenic	56637	NM_005447	9182	Hs.527881	NM_005447	ENSG00000198774	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association domain family member 9	protein-coding
1.66853-3	chr11	4304793	4305292	+	0	NA	Intergenic	SVA_B|Other|Other	84574	NM_001005161	143496	Hs.447463	NM_001005161	ENSG00000221996	OR52B4	OR11-3	olfactory receptor family 52 subfamily B member 4 (gene/pseudogene)	protein-coding
3.64516-6	chr15	30763497	30763996	+	0	NA	Intergenic	CpG	-57283	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
0.357404-2	chr1	227897695	227898194	+	0	NA	Intergenic	SVA_D|Other|Other	-12536	NR_036753	401983	Hs.681816	NR_036753		ZNF847P	gm127	zinc finger protein 847, pseudogene	pseudo
7.69551-8	chr1	226896400	226896899	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	30227	NM_002221	3707	Hs.528087	NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
6.34512-4	chr1	187880784	187881283	+	0	NA	Intergenic	Intergenic	468273	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
0.2365-18	chr5	177495224	177495723	+	0	NA	Intergenic	L1M4c|LINE|L1	-45083	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
1.66853	chr17	6066889	6067388	+	0	NA	Intergenic	Intergenic	93204	NM_015253	23302	Hs.370166	NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
1.49967-3	chr3	11684085	11684584	+	0	NA	intron (NM_014667, intron 2 of 5)	CpG	1117	NM_001128219	9686	Hs.740389	NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
0.25028-38	chr8	102586561	102587060	+	0	NA	intron (NM_001330593, intron 6 of 15)	intron (NM_001330593, intron 6 of 15)	82142	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding
5.0307-13	chr8	103597423	103597922	+	0	NA	Intergenic	Intergenic	33824	NM_024410	4956	Hs.159274	NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
0.555173-27	chr17	73851872	73852371	+	0	NA	promoter-TSS (NM_012478)	promoter-TSS (NM_012478)	-228	NM_001330499	23558	Hs.514489	NM_012478	ENSG00000132471	WBP2	GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
12.0066	chr22	28820625	28821124	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-34983	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
26.3451-2	chr14	30503281	30503780	+	0	NA	Intergenic	Intergenic	-106582	NM_001330069	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
12.0204-4	chr1	48996265	48996764	+	0	NA	Intergenic	Intergenic	-58634	NM_001286239	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
10.3012	chr4	99181343	99181842	+	0	NA	promoter-TSS (NM_001100426)	promoter-TSS (NM_001100426)	-935	NM_001100427	5910	Hs.132858	NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
0.385789-39	chr2	37897973	37898472	+	0	NA	intron (NM_001270436, intron 1 of 1)	CpG	1120	NM_006449	10602	Hs.369574	NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
11.7718-2	chr2	54682333	54682832	+	0	NA	promoter-TSS (NM_003128)	promoter-TSS (NM_003128)	-872	NM_003128	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
2.66001-23	chr8	120879281	120879780	+	0	NA	Intergenic	Intergenic	-6365	NM_001283012	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR interacting protein	protein-coding
1.85087-17	chr5	71616067	71616566	+	0	NA	promoter-TSS (NM_001286748)	promoter-TSS (NM_001286748)	122	NM_001284405	79810	Hs.126906	NM_024754	ENSG00000049883	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
13.0803	chr12	53189387	53189886	+	0	NA	exon (NM_057088, exon 1 of 9)	exon (NM_057088, exon 1 of 9)	256	NM_057088	3850	Hs.680652	NM_057088	ENSG00000186442	KRT3	CK3|K3	keratin 3	protein-coding
1.71985-12	chr7	26221860	26222359	+	0	NA	intron (NM_004289, intron 2 of 3)	AluSz6|SINE|Alu	18304	NM_002137	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
0.118872-59	chr9	139441024	139441523	+	0	NA	promoter-TSS (NR_039821)	promoter-TSS (NR_039821)	-562	NR_039821	100616301		NR_039821	ENSG00000265181	MIR4674	-	microRNA 4674	ncRNA
2.04815-11	chr10	112526043	112526542	+	0	NA	intron (NM_001134363, intron 1 of 13)	SVA_D|Other|Other	104370	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
0.555173-20	chr3	58220261	58220760	+	0	NA	Intergenic	Intergenic	-2719	NM_020676	57406	Hs.476454	NM_020676	ENSG00000163686	ABHD6	-	abhydrolase domain containing 6	protein-coding
13.9903-2	chr6	3064239	3064738	+	0	NA	intron (NM_003804, intron 1 of 10)	CpG	366	NM_003804	8737	Hs.519842	NM_003804	ENSG00000137275	RIPK1	RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
0.48177-39	chr8	129441922	129442421	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	134754	NR_121673	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
0.996329-9	chr16	67694068	67694567	+	0	NA	promoter-TSS (NM_016948)	promoter-TSS (NM_016948)	401	NM_001082487	65057	Hs.78019	NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD, shelterin complex subunit and telomerase recruitment factor	protein-coding
0.181814-14	chr2	217460903	217461402	+	0	NA	intron (NR_110392, intron 2 of 3)	intron (NR_110392, intron 2 of 3)	10509	NR_110392	101928232	Hs.694592	NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
7.82516-5	chr10	5113822	5114321	+	0	NA	intron (NM_001253908, intron 1 of 8)	MER67A|LTR|ERV1	-22497	NM_001253909	8644	Hs.78183	NM_003739	ENSG00000196139	AKR1C3	DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS	aldo-keto reductase family 1 member C3	protein-coding
5.95166-4	chr12	114311467	114311966	+	0	NA	intron (NM_001146699, intron 21 of 24)	intron (NM_001146699, intron 21 of 24)	92460	NM_016196	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding
8.8941-15	chr2	146712479	146712978	+	0	NA	Intergenic	L1PB1|LINE|L1	-631897	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
1.62412-5	chr7	112032171	112032670	+	0	NA	Intergenic	AluJb|SINE|Alu	-30779	NM_001197080	3475	Hs.7879	NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
2.39578-14	chr7	3762068	3762567	+	0	NA	intron (NM_152744, intron 4 of 44)	intron (NM_152744, intron 4 of 44)	-407000	NM_001079653	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
0.599818-32	chr11	70368888	70369387	+	0	NA	intron (NM_012309, intron 14 of 22)	intron (NM_012309, intron 14 of 22)	-108062	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	ncRNA
1.45087-5	chr2	36845441	36845940	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-20358	NM_005102	9637	Hs.258563	NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding
1.71985-8	chr19	1897515	1898014	+	0	NA	Intergenic	Intergenic	-7449	NM_001329539	113178	Hs.144980	NM_079834	ENSG00000227500	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
4.01209-7	chr11	124712962	124713461	+	0	NA	Intergenic	CpG	-22094	NM_022370	64221	Hs.435621	NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
2.54925-5	chr1	196568028	196568527	+	0	NA	intron (NM_198503, intron 1 of 27)	intron (NM_198503, intron 1 of 27)	9284	NM_001287820	343450	Hs.657046	NM_198503	ENSG00000162687	KCNT2	KCa4.2|SLICK|SLO2.1	potassium sodium-activated channel subfamily T member 2	protein-coding
0.222764-2	chr12	56101501	56102000	+	0	NA	promoter-TSS (NM_002206)	promoter-TSS (NM_002206)	-64	NM_001144996	3679	Hs.524484	NM_002206	ENSG00000135424	ITGA7	-	integrin subunit alpha 7	protein-coding
1.56767-6	chr1	26495303	26495802	+	0	NA	promoter-TSS (NM_015871)	promoter-TSS (NM_015871)	-836	NM_015871	51042	Hs.477273	NM_015871	ENSG00000142684	ZNF593	ZT86	zinc finger protein 593	protein-coding
1.22053-15	chrX	6145485	6145984	+	0	NA	promoter-TSS (NM_001282146)	promoter-TSS (NM_001282146)	154	NM_020742	57502	Hs.21107	NM_020742	ENSG00000146938	NLGN4X	ASPGX2|AUTSX2|HLNX|HNL4X|NLGN4	neuroligin 4, X-linked	protein-coding
2.46417-9	chr11	447926	448611	+	0	NA	promoter-TSS (NM_001329548)	promoter-TSS (NM_001329548)	0	NM_001329548	81490	Hs.12851	NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
0.925886-12	chr5	4662949	4663448	+	0	NA	Intergenic	Intergenic	-110396	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
15.9688-9	chrX	16985940	16986439	+	0	NA	intron (NM_001080975, intron 1 of 17)	SVA_D|Other|Other	21375	NM_001080975	9185	Hs.186810	NM_004726	ENSG00000169891	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
0.472076-32	chr3	194979576	194980075	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-11176	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
0.634863-2	chr17	72008027	72008526	+	0	NA	Intergenic	Intergenic	-183600	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
2.35824-18	chr10	17659130	17659629	+	0	NA	promoter-TSS (NM_014241)	promoter-TSS (NM_014241)	-6	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	HACD1	CAP|PTPLA	3-hydroxyacyl-CoA dehydratase 1	protein-coding
0.070049-64	chr11	8120772	8121271	+	0	NA	intron (NM_003320, intron 10 of 12)	intron (NM_003320, intron 10 of 12)	18112	NM_177972	7275	Hs.568986	NM_003320	ENSG00000166402	TUB	RDOB|rd5	tubby bipartite transcription factor	protein-coding
2.26945-16	chr6	26394329	26394828	+	0	NA	3' UTR (NM_001197238, exon 8 of 8)	3' UTR (NM_001197238, exon 8 of 8)	-7887	NM_001145009	11119	Hs.191510	NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
1.32533-4	chr6	125918577	125919076	+	0	NA	Intergenic	Intergenic	-76673	NR_038906	643623	Hs.520367	NR_038906	ENSG00000224506	LOC643623	-	uncharacterized LOC643623	ncRNA
20.8725	chr19	20011401	20011900	+	0	NA	promoter-TSS (NM_031218)	promoter-TSS (NM_031218)	-72	NM_031218	81931	Hs.301059	NM_031218	ENSG00000184635	ZNF93	HPF34|HTF34|TF34|ZNF505	zinc finger protein 93	protein-coding
11.0018-2	chrUn_gl000231	18851	19350	+	0	NA	NA	CpG	NA	NA								
2.76544-12	chr3	149070168	149070667	+	0	NA	Intergenic	Intergenic	-18869	NM_138786	116441	Hs.22026	NM_138786	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
3.8405-13	chr7	2563053	2563552	+	0	NA	intron (NM_001040167, intron 1 of 7)	intron (NM_001040167, intron 1 of 7)	-3406	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
5.83359	chr7	41086146	41086645	+	0	NA	Intergenic	Intergenic	-54807	NR_110832	101928773	Hs.382363	NR_110832	ENSG00000224017	LINC01449	-	long intergenic non-protein coding RNA 1449	ncRNA
1.09579-12	chr14	91719295	91719794	+	0	NA	intron (NM_003485, intron 1 of 1)	intron (NM_003485, intron 1 of 1)	680	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
0.34328-17	chr17	42072177	42072676	+	0	NA	intron (NM_004160, intron 1 of 6)	CpG	9411	NM_004160	5697	Hs.169249	NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
3.99027-29	chr14	77506586	77507085	+	0	NA	promoter-TSS (NR_110554)	promoter-TSS (NR_110554)	-557	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
6.8403	chr1	61542437	61542936	+	0	NA	promoter-TSS (NM_001145511)	promoter-TSS (NM_001145511)	-260	NM_001145511	4774	Hs.740757	NM_005595	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
3.40084-26	chr14	59931686	59932185	+	0	NA	exon (NM_022571, exon 1 of 1)	exon (NM_022571, exon 1 of 1)	124	NM_022571	64582	Hs.647573	NM_022571	ENSG00000181619	GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
2.70026-5	chr1	146569845	146570344	+	0	NA	TTS (NR_103466)	TTS (NR_103466)	-13791	NR_121645	101447996		NR_121645		RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
0.0436481	chr19	47729406	47729905	+	0	NA	promoter-TSS (NR_036158)	promoter-TSS (NR_036158)	-544	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
2.22573-12	chr7	64724692	64725191	+	0	NA	Intergenic	SVA_E|Other|Other	-113771	NM_001287534	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
2.88193-4	chr2	149632466	149632965	+	0	NA	promoter-TSS (NM_004522)	promoter-TSS (NM_004522)	-77	NM_004522	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
19.2812	chr7	32065281	32065780	+	0	NA	intron (NM_001322059, intron 3 of 17)	intron (NM_001322059, intron 3 of 17)	44944	NM_001191057	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
0.809219-2	chr2	27341269	27341768	+	0	NA	intron (NM_001301324, intron 1 of 5)	intron (NM_001301324, intron 1 of 5)	255	NM_001166239	10669	Hs.159525	NM_006569	ENSG00000138028	CGREF1	CGR11	cell growth regulator with EF-hand domain 1	protein-coding
1.39662-5	chr15	85806667	85807166	+	0	NA	Intergenic	Intergenic	23275	NM_001310153	100133220	Hs.454625	NM_001310153		GOLGA6L3	-	golgin A6 family-like 3	protein-coding
6.27088	chr15	65629423	65629922	+	0	NA	intron (NM_004884, intron 2 of 13)	intron (NM_004884, intron 2 of 13)	40706	NM_004884	9543	Hs.128292	NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
0.741724-16	chr13	48574878	48575377	+	0	NA	intron (NM_003850, intron 1 of 10)	CpG	335	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|A-SCS|MTDPS5|SCS-betaA	succinate-CoA ligase ADP-forming beta subunit	protein-coding
3.95774-9	chr4	122617729	122618228	+	0	NA	intron (NM_001154, intron 1 of 12)	CpG-20071	169	NM_001154	308	Hs.480653	NM_001154	ENSG00000164111	ANXA5	ANX5|ENX2|HEL-S-7|PP4|RPRGL3	annexin A5	protein-coding
0.118872-40	chr15	72608244	72608743	+	0	NA	intron (NM_001172684, intron 1 of 11)	intron (NM_001172684, intron 1 of 11)	3794	NM_001172684	60677	Hs.348342	NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP, Elav-like family member 6	protein-coding
6.38272-2	chr11	34701652	34702151	+	0	NA	Intergenic	Intergenic	47890	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
4.36519-17	chr12	3246445	3246944	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	60173	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
6.81937-15	chr7	29724105	29724958	+	0	NA	promoter-TSS (NR_036482)	promoter-TSS (NR_036482)	223	NR_024278	646762	Hs.30579	NR_024278		LOC646762	-	uncharacterized LOC646762	ncRNA
11.2901-3	chr5	155300241	155300740	+	0	NA	Intergenic	L1PB4|LINE|L1	-453277	NM_172244	6444	Hs.387207	NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
0.619809-13	chr20	1294061	1294560	+	0	NA	promoter-TSS (NM_015685)	promoter-TSS (NM_015685)	7	NM_015685	27111	Hs.657015	NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein 2	protein-coding
0.609802-6	chr14	96027223	96027722	+	0	NA	Intergenic	Intergenic	26149	NM_016417	51218	Hs.744943	NM_016417	ENSG00000182512	GLRX5	C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC	glutaredoxin 5	protein-coding
1.89767-5	chr8	29762823	29763322	+	0	NA	Intergenic	Intergenic	-15957	NR_024473	286135	Hs.376840	NR_024473	ENSG00000253279	FAM183CP	-	family with sequence similarity 183 member C, pseudogene	ncRNA
6.79854-6	chr2	124797291	124797790	+	0	NA	intron (NM_130773, intron 1 of 23)	MER134|DNA?|DNA?	14676	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
11.1634-3	chr1	12011899	12012398	+	0	NA	intron (NM_000302, intron 4 of 18)	intron (NM_000302, intron 4 of 18)	17424	NM_000302	5351	Hs.75093	NM_000302	ENSG00000083444	PLOD1	EDS6|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
0.296531-45	chr10	31321101	31321600	+	0	NA	promoter-TSS (NM_001143766)	promoter-TSS (NM_001143766)	-484	NM_001143771	220929	Hs.660642	NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
7.74691-13	chr5	133930378	133930877	+	0	NA	Intergenic	L2c|LINE|L2	37906	NM_001033503	51128	Hs.432984	NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
0.0261362-50	chr6	80842643	80843142	+	0	NA	intron (NR_134945, intron 3 of 10)	intron (NR_134945, intron 3 of 10)	26565	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
0.501223-7	chr5	123587996	123588495	+	0	NA	intron (NR_125774, intron 4 of 5)	UCON10|Unknown|Unknown	185968	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
20.9583	chr2	175644078	175644577	+	0	NA	Intergenic	Intergenic	-15127	NM_000079	1134	Hs.434479	NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
4.1005-4	chr4	72461343	72461842	+	0	NA	Intergenic	Intergenic	188487	NM_000583	2638	Hs.418497	NM_000583	ENSG00000145321	GC	DBP|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDBG|VDBP	GC, vitamin D binding protein	protein-coding
0.0392635-11	chr5	1344667	1345166	+	0	NA	exon (NM_030782, exon 1 of 17)	exon (NM_030782, exon 1 of 17)	269	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
0.624821-16	chr9	86573931	86574430	+	0	NA	Intergenic	AluJb|SINE|Alu	-2279	NM_001317997	84267	Hs.208914	NM_032307	ENSG00000165118	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
4.37707-3	chr4	174957269	174957768	+	0	NA	Intergenic	Intergenic	184031	NR_125896	101928509	Hs.147719	NR_125896	ENSG00000248174	LOC101928509	-	uncharacterized LOC101928509	ncRNA
6.16185-2	chr1	25526578	25527077	+	0	NA	Intergenic	Intergenic	32186	NM_015484	25949	Hs.20013	NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
1.57391-3	chr3	128102284	128102783	+	0	NA	intron (NM_021937, intron 6 of 6)	intron (NM_021937, intron 6 of 6)	-79904	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
2.64401-3	chr7	44613325	44613824	+	0	NA	5' UTR (NM_001257189, exon 1 of 13)	5' UTR (NM_001257189, exon 1 of 13)	563	NM_019082	54606	Hs.654762	NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
0.5061-19	chr8	37678978	37679657	+	0	NA	intron (NM_032777, intron 2 of 18)	intron (NM_032777, intron 2 of 18)	24916	NM_032777	25960	Hs.274136	NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
0.856568-9	chr3	123893282	123893781	+	0	NA	intron (NM_001024660, intron 1 of 59)	intron (NM_001024660, intron 1 of 59)	41755	NR_049798	100847021		NR_049798	ENSG00000266383	MIR5002	-	microRNA 5002	ncRNA
12.1467-2	chr18	59198322	59198821	+	0	NA	intron (NM_031891, intron 7 of 11)	intron (NM_031891, intron 7 of 11)	197756	NM_031891	28316	Hs.671510	NM_031891	ENSG00000101542	CDH20	CDH7L3|Cdh7	cadherin 20	protein-coding
0.190881-37	chr1	143467469	143467968	+	0	NA	Intergenic	Intergenic	-205203	NR_106967	102466225		NR_106967	ENSG00000278596	MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
3.03644-8	chr9	6623107	6623606	+	0	NA	intron (NM_000170, intron 2 of 24)	SVA_D|Other|Other	22336	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine decarboxylase	protein-coding
3.41989-11	chr5	1643632	1644131	+	0	NA	Intergenic	Intergenic	-9761	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
21.5927	chr5	55184068	55184567	+	0	NA	intron (NM_001242639, intron 6 of 15)	intron (NM_001242639, intron 6 of 15)	35167	NM_001242636	133396	Hs.55378	NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R	interleukin 31 receptor A	protein-coding
0.0305075-15	chr12	122070734	122071233	+	0	NA	intron (NM_032790, intron 1 of 1)	intron (NM_032790, intron 1 of 1)	6528	NM_032790	84876	Hs.55148	NM_032790		ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
1.7134-9	chr3	119041657	119042156	+	0	NA	promoter-TSS (NR_046748)	promoter-TSS (NR_046748)	-299	NR_046748	100874246	Hs.607097	NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
0.070049-68	chr12	93861245	93861744	+	0	NA	intron (NR_038161, intron 1 of 6)	CpG	228	NR_038160	28977	Hs.199579	NM_014050	ENSG00000198015	MRPL42	HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT	mitochondrial ribosomal protein L42	protein-coding
0.352691-12	chr18	44373524	44374023	+	0	NA	Intergenic	Intergenic	-36641	NM_001307987	29906	Hs.465025	NM_013305	ENSG00000101638	ST8SIA5	SIAT8-E|SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
8.60121-13	chr12	49628118	49628617	+	0	NA	intron (NM_001303114, intron 1 of 3)	CpG	6658	NM_001303116	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
2.17527-9	chr4	81952299	81952798	+	0	NA	exon (NM_001201, exon 1 of 3)	exon (NM_001201, exon 1 of 3)	429	NM_001201	651	Hs.387411	NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
7.05534-4	chr10	99185887	99186386	+	0	NA	exon (NM_002629, exon 1 of 4)	exon (NM_002629, exon 1 of 4)	254	NM_002629	5223	Hs.632918	NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
0.888424-21	chr1	154984601	154985100	+	0	NA	intron (NR_045515, intron 4 of 5)	intron (NR_045515, intron 4 of 5)	9744	NR_045515	51043	Hs.729279	NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX	zinc finger and BTB domain containing 7B	protein-coding
10.3716	chr8	109455536	109456035	+	0	NA	promoter-TSS (NM_001329494)	promoter-TSS (NM_001329494)	-27	NR_138033	9694	Hs.654351	NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
2.8567-2	chr3	15371604	15372103	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	2283	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
0.0217692-2	chr4	186130098	186130597	+	0	NA	intron (NM_001317781, intron 1 of 18)	intron (NM_001317781, intron 1 of 18)	4956	NM_001317781	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
0.0612309-5	chr17	73127447	73127946	+	0	NA	exon (NM_014595, exon 1 of 5)	exon (NM_014595, exon 1 of 5)	194	NM_001252377	30833	Hs.67201	NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
0.809219-15	chr11	6948411	6948910	+	0	NA	intron (NM_013250, intron 1 of 6)	intron (NM_013250, intron 1 of 6)	1006	NM_013250	7762	Hs.523457	NM_013250	ENSG00000149054	ZNF215	BAZ-2|BAZ2|ZKSCAN11|ZSCAN43	zinc finger protein 215	protein-coding
1.45694-20	chr12	122241054	122241553	+	0	NA	promoter-TSS (NR_002809)	promoter-TSS (NR_002809)	87	NR_002809	338799	Hs.524804	NR_002809	ENSG00000212694	LINC01089	LIMT	long intergenic non-protein coding RNA 1089	ncRNA
2.89037-4	chr2	122960964	122961463	+	0	NA	Intergenic	Intergenic	448092	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
3.46787	chr6	7043183	7043682	+	0	NA	Intergenic	Intergenic	-64398	NM_001168344	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
1.99283-10	chr4	134069582	134070081	+	0	NA	promoter-TSS (NM_032961)	promoter-TSS (NM_032961)	440	NR_125885	101927359	Hs.649960	NR_125885	ENSG00000250241	LOC101927359	-	uncharacterized LOC101927359	ncRNA
9.0309-12	chrX	73631765	73632264	+	0	NA	Intergenic	SVA_C|Other|Other	-9314	NM_006517	6567	Hs.75317	NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
0.123337-6	chr1	193155397	193155896	+	0	NA	promoter-TSS (NM_003783)	promoter-TSS (NM_003783)	97	NM_003783	8707	Hs.518834	NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
10.846	chr9	112268302	112268801	+	0	NA	Intergenic	Intergenic	5274	NR_037493	100500898		NR_037493	ENSG00000263861	MIR3927	-	microRNA 3927	ncRNA
0.705811-8	chr6	33756678	33757177	+	0	NA	promoter-TSS (NM_181336)	promoter-TSS (NM_181336)	-21	NM_181336	221496	Hs.444845	NM_181336	ENSG00000161904	LEMD2	CTRCT42|NET25|dJ482C21.1	LEM domain containing 2	protein-coding
4.01209-5	chr6	2450759	2451258	+	0	NA	Intergenic	Intergenic	183829	NR_131168	154386	Hs.680574	NM_152554	ENSG00000164385	LINC01600	C6orf195|bA145H9.2	long intergenic non-protein coding RNA 1600	ncRNA
6.1261-3	chr4	5887534	5888033	+	0	NA	intron (NM_001014809, intron 1 of 13)	intron (NM_001014809, intron 1 of 13)	1757	NM_001288662	1400	Hs.135270	NM_001313	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
4.57175-9	chr6	42085904	42086403	+	0	NA	intron (NM_001164446, intron 2 of 4)	intron (NM_001164446, intron 2 of 4)	24562	NM_001164446	647024	Hs.444277	NM_001164446	ENSG00000188112	C6orf132	bA7K24.2	chromosome 6 open reading frame 132	protein-coding
11.9044-9	chr5	158655041	158655540	+	0	NA	intron (NR_134261, intron 1 of 2)	intron (NR_134261, intron 1 of 2)	567	NR_134261	105377682		NR_134261	ENSG00000253315	LINC01932	-	long intergenic non-protein coding RNA 1932	ncRNA
15.8336-3	chr7	69971237	69971736	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-626037	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
2.1254-4	chr16	31470863	31471362	+	0	NA	exon (NM_001288767, exon 3 of 8)	exon (NM_001288767, exon 3 of 8)	795	NM_024742	79798	Hs.732945	NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
0.241089-41	chr3	124553777	124554276	+	0	NA	intron (NM_002213, intron 5 of 14)	intron (NM_002213, intron 5 of 14)	52126	NM_002213	3693	Hs.13155	NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
54.1908	chr12	7526987	7527486	+	0	NA	exon (NM_174941, exon 13 of 20)	exon (NM_174941, exon 13 of 20)	69545	NM_001297650	283316	Hs.631727	NM_174941	ENSG00000177675	CD163L1	CD163B|M160|SCARI2	CD163 molecule like 1	protein-coding
0.296531-59	chr2	109647858	109648357	+	0	NA	Intergenic	CpG	-42279	NM_022336	10913	Hs.171971	NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
12.2915-4	chr1	18606110	18606609	+	0	NA	intron (NM_032880, intron 2 of 9)	intron (NM_032880, intron 2 of 9)	172119	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding
0.195421-7	chr3	155703355	155703854	+	0	NA	Intergenic	Intergenic	115279	NM_003875	8833	Hs.591314	NM_003875	ENSG00000163655	GMPS	-	guanine monophosphate synthase	protein-coding
3.18759-11	chr2	70528478	70528977	+	0	NA	5' UTR (NM_001329757, exon 2 of 4)	5' UTR (NM_001329757, exon 2 of 4)	450	NM_001329752	84908	Hs.516077	NM_032822	ENSG00000035141	FAM136A	-	family with sequence similarity 136 member A	protein-coding
2.76544-11	chr12	19592215	19592714	+	0	NA	promoter-TSS (NM_153207)	promoter-TSS (NM_153207)	-144	NM_153207	121536	Hs.126497	NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
8.86057-6	chr2	64601792	64602291	+	0	NA	Intergenic	Intergenic	-34059	NR_106995	102465833		NR_106995	ENSG00000264297	MIR4433B	hsa-mir-4433b	microRNA 4433b	ncRNA
0.199966-17	chr3	69101199	69101698	+	0	NA	promoter-TSS (NM_007114)	promoter-TSS (NM_007114)	36	NM_007114	7110	Hs.267632	NM_007114	ENSG00000144747	TMF1	ARA160|TMF	TATA element modulatory factor 1	protein-coding
0.555173-25	chr17	61043049	61043548	+	0	NA	Intergenic	Intergenic	21722	NR_030363	693218		NR_030363	ENSG00000207552	MIR633	MIRN633|hsa-mir-633	microRNA 633	ncRNA
1.00179-10	chr6	30852505	30853004	+	0	NA	promoter-TSS (NM_001202523).6	promoter-TSS (NM_001202523).6	-3	NM_001202523	780	Hs.631988	NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
0.0305075-28	chr4	18442078	18442577	+	0	NA	Intergenic	Intergenic	-418829	NR_136669	254251	Hs.446201	NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
0.105502-8	chr9	46903849	46904348	+	0	NA	Intergenic	Intergenic	60429	NR_126050	103908605	Hs.721139	NR_126050		LOC103908605	-	uncharacterized LOC103908605	ncRNA
0.79355-33	chr7	45364303	45364802	+	0	NA	Intergenic	MER50|LTR|ERV1	167185	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
3.02771-3	chr4	77484409	77484908	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	-10063	NR_039654	100616299		NR_039654	ENSG00000263445	MIR4450	mir-4450	microRNA 4450	ncRNA
3.41035-18	chr9	77617081	77617580	+	0	NA	intron (NM_152420, intron 3 of 7)	MER33|DNA|hAT-Charlie	24737	NM_001320497	138199	Hs.567688	NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
8.26814-3	chr10	121484532	121485031	+	0	NA	promoter-TSS (NM_001243195)	promoter-TSS (NM_001243195)	-778	NM_014937	22876	Hs.369755	NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
0.700704-9	chr17	63290274	63290773	+	0	NA	Intergenic	Intergenic	157067	NM_001081955	8787	Hs.664380	NM_003835	ENSG00000108370	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
0.979971-24	chr2	139537048	139537547	+	0	NA	intron (NM_007226, intron 1 of 1)	intron (NM_007226, intron 1 of 1)	514	NM_007226	11249	Hs.435019	NM_007226	ENSG00000144227	NXPH2	NPH2	neurexophilin 2	protein-coding
3.49692-18	chr4	140216715	140217214	+	0	NA	5' UTR (NM_001184986, exon 3 of 6)	5' UTR (NM_001184986, exon 3 of 6)	5400	NM_001184991	4717	Hs.84549	NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
0.123337-48	chr12	104350785	104351284	+	0	NA	promoter-TSS (NM_001135570)	promoter-TSS (NM_001135570)	-41	NM_001135570	728568	Hs.42547	NM_001135570	ENSG00000204954	C12orf73	-	chromosome 12 open reading frame 73	protein-coding
1.27261-6	chr17	75282073	75282572	+	0	NA	intron (NM_001293695, intron 1 of 10)	intron (NM_001293695, intron 1 of 10)	-1651	NM_001113492	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
2.17527-4	chr8	61565444	61565943	+	0	NA	Intergenic	Intergenic	-25631	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
6.73664-3	chr19	39341186	39341685	+	0	NA	promoter-TSS (NM_001533)	promoter-TSS (NM_001533)	-818	NM_001533	3191	Hs.644906	NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
1.57391-5	chr1	212471133	212471632	+	0	NA	intron (NM_006243, intron 1 of 12)	SVA_E|Other|Other	-3766	NM_001199756	5525	Hs.744012	NM_006243	ENSG00000066027	PPP2R5A	B56A|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
22.6281	chr4	85339058	85339557	+	0	NA	Intergenic	Intergenic	80080	NM_006168	4825	Hs.546270	NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
10.5012-5	chr1	169497072	169497571	+	0	NA	exon (NM_000130, exon 17 of 25)	exon (NM_000130, exon 17 of 25)	-42113	NM_001319667	10560	Hs.30246	NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
0.574959-3	chr9	138999258	138999757	+	0	NA	Intergenic	Intergenic	10770	NM_001256526	90120	Hs.287411	NM_152833	ENSG00000238227	C9orf69	-	chromosome 9 open reading frame 69	protein-coding
3.06273-5	chr8	62363252	62363751	+	0	NA	intron (NM_173519, intron 3 of 5)	MLT1I|LTR|ERVL-MaLR	162976	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
12.2988-4	chr2	38055116	38055615	+	0	NA	intron (NR_110012, intron 3 of 3)	intron (NR_110012, intron 3 of 3)	1489	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
12.8567-4	chr3	139725857	139726356	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	72079	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
3.66532-8	chr17	78819946	78820445	+	0	NA	intron (NM_001163034, intron 10 of 29)	intron (NM_001163034, intron 10 of 29)	-40763	NR_110852	101928855	Hs.670692	NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
9.24453-18	chr7	5603061	5603560	+	0	NA	Intergenic	Intergenic	-29126	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
22.9757	chr7	11564064	11564563	+	0	NA	intron (NM_015204, intron 6 of 26)	intron (NM_015204, intron 6 of 26)	307511	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin type 1 domain containing 7A	protein-coding
7.35182-3	chr8	137282629	137283128	+	0	NA	Intergenic	Intergenic	813170	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
2.00659-18	chr1	2244199	2244698	+	0	NA	Intergenic	Intergenic	39652	NR_024489	100129534	Hs.655313	NM_001127577	ENSG00000269896	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
0.118872-21	chr20	20032893	20033392	+	0	NA	promoter-TSS (NM_001278628)	promoter-TSS (NM_001278628)	-6	NM_001278628	51340	Hs.171342	NM_016652	ENSG00000101343	CRNKL1	CLF|CRN|Clf1|HCRN|MSTP021|SYF3	crooked neck pre-mRNA splicing factor 1	protein-coding
7.61954-11	chr3	159756649	159757148	+	0	NA	intron (NR_108088, intron 3 of 9)	CpG	18462	NR_104132	730109	Hs.99333	NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
0.589858-11	chr7	113950328	113950827	+	0	NA	intron (NR_033766, intron 2 of 19)	HERVL40-int|LTR|ERVL	-104475	NM_001172766	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
0.589858-27	chr14	103006717	103007216	+	0	NA	TTS (NR_036192)	TTS (NR_036192)	985	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	ncRNA
3.29754-3	chrX	107979030	107979529	+	0	NA	promoter-TSS (NR_110652)	promoter-TSS (NR_110652)	328	NM_003604	8471	Hs.407141	NM_003604	ENSG00000133124	IRS4	IRS-4|PY160	insulin receptor substrate 4	protein-coding
7.37549-13	chr5	71360544	71361043	+	0	NA	Intergenic	Intergenic	-42302	NM_005909	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding
8.79426-18	chr6	150598787	150599286	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-90992	NM_001164695	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
10.7624-2	chr10	32054093	32054592	+	0	NA	Intergenic	Intergenic	143512	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
3.85103-26	chr3	4909933	4910432	+	0	NA	Intergenic	CpG	38004	NR_125914	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
13.5754-3	chr18	10213464	10213963	+	0	NA	Intergenic	Intergenic	200654	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
17.3993-4	chr15	27364777	27365276	+	0	NA	intron (NM_033223, intron 3 of 9)	MLT1E1A|LTR|ERVL-MaLR	41440	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
2.29148-25	chr13	107570063	107570562	+	0	NA	Intergenic	CpG	264084	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
2.55707-2	chr8	141520500	141520999	+	0	NA	promoter-TSS (NM_017444)	promoter-TSS (NM_017444)	-648	NM_017444	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
1.91789-3	chr2	85956023	85956522	+	0	NA	Intergenic	Intergenic	-24637	NM_032827	84913	Hs.135569	NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
0.565055-3	chr8	26319198	26319697	+	0	NA	Intergenic	MIRb|SINE|MIR	52036	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
2.64401-11	chr4	138980298	138980797	+	0	NA	intron (NR_037866, intron 7 of 10)	L1PA15|LINE|L1	-29621	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	ncRNA
0.0261362-31	chr3	42054842	42055341	+	0	NA	Intergenic	CpG	-51159	NR_136342	54986	Hs.656192	NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
4.31798-16	chrX	134539939	134540438	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	9834	NR_104652	100506790	Hs.161358	NR_104652	ENSG00000229015	LOC100506790	-	uncharacterized LOC100506790	ncRNA
37.1444	chr8	29176479	29176978	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	29594	NM_057158	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
2.88193-13	chr20	10112573	10113072	+	0	NA	intron (NR_040710, intron 2 of 4)	intron (NR_040710, intron 2 of 4)	-86624	NM_001322907	6616	Hs.167317	NM_003081	ENSG00000132639	SNAP25	CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2	synaptosome associated protein 25	protein-coding
5.90067-2	chr13	60971287	60971786	+	0	NA	exon (NM_001146070, exon 1 of 14)	exon (NM_001146070, exon 1 of 14)	109	NM_001146070	81550	Hs.525061	NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
11.8177	chr4	103658221	103658720	+	0	NA	intron (NM_005908, intron 1 of 16)	L1PB1|LINE|L1	23681	NM_005908	4126	Hs.480415	NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
10.1728	chr2	139571633	139572132	+	0	NA	Intergenic	Intergenic	-34071	NM_007226	11249	Hs.435019	NM_007226	ENSG00000144227	NXPH2	NPH2	neurexophilin 2	protein-coding
12.4718	chr14	66186579	66187078	+	0	NA	intron (NR_038167, intron 7 of 8)	L1M1|LINE|L1	249008	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
3.00162-6	chr3	190630436	190630935	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	34966	NR_024343	100170222	Hs.717310	NR_024343		SNAR-I	snaR-3	small ILF3/NF90-associated RNA I	snRNA
6.9037-5	chr17	80055893	80056392	+	0	NA	promoter-TSS (NM_004104)	promoter-TSS (NM_004104)	-36	NM_004104	2194	Hs.83190	NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
3.65523-4	chr12	67198280	67198779	+	0	NA	Intergenic	Intergenic	-125604	NM_001178074	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
1.77832-4	chr8	124285788	124286287	+	0	NA	intron (NR_037873, intron 1 of 3)	intron (NR_037873, intron 1 of 3)	690	NR_037874	11244	Hs.521800	NM_007222	ENSG00000165156	ZHX1	-	zinc fingers and homeoboxes 1	protein-coding
18.0688-3	chr13	34184430	34184929	+	0	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	66293	NM_001243476	90627	Hs.156551	NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
2.54145-2	chr17	27892530	27893029	+	0	NA	intron (NM_198147, intron 1 of 1)	intron (NM_198147, intron 1 of 1)	1263	NM_198147	116236	Hs.106510	NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
1.87755-7	chr18	63404677	63405176	+	0	NA	Intergenic	Intergenic	-12562	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
6.27088-3	chr4	108722788	108723287	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-22684	NM_001136258	166929	Hs.595423	NM_152621	ENSG00000164023	SGMS2	SMS2	sphingomyelin synthase 2	protein-coding
2.07608-11	chr7	94983077	94983576	+	0	NA	Intergenic	X7B_LINE|LINE|CR1	-29442	NM_000446	5444	Hs.370995	NM_000446	ENSG00000005421	PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
0.0436481-33	chr22	20104625	20105124	+	0	NA	promoter-TSS (NM_022727)	promoter-TSS (NM_022727)	-56	NM_182984	27037	Hs.713579	NM_022727	ENSG00000099899	TRMT2A	HTF9C	tRNA methyltransferase 2 homolog A	protein-coding
2.79014-10	chr3	196750067	196750566	+	0	NA	intron (NM_005929, intron 4 of 15)	intron (NM_005929, intron 4 of 15)	6370	NM_033316	4241	Hs.184727	NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
18.4164	chr1	212997188	212997687	+	0	NA	Intergenic	Intergenic	23554	NM_001024601	149643	Hs.153274	NM_001024601	ENSG00000185523	SPATA45	C1orf227	spermatogenesis associated 45	protein-coding
3.74688-9	chr7	87829595	87830538	+	0	NA	3' UTR (NM_001324417, exon 30 of 30)	3' UTR (NM_001324417, exon 30 of 30)	-15909	NR_120517	102723885	Hs.489040	NR_120517		LOC102723885	-	uncharacterized LOC102723885	ncRNA
20.4964-2	chr18	54424139	54424638	+	0	NA	exon (NM_015285, exon 15 of 28)	exon (NM_015285, exon 15 of 28)	105772	NM_052834	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
0.685421-13	chr10	16563575	16564074	+	0	NA	5' UTR (NM_001010908, exon 1 of 2)	5' UTR (NM_001010908, exon 1 of 2)	180	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding
0.11441-14	chr15	40212959	40213458	+	0	NA	promoter-TSS (NM_001271854)	promoter-TSS (NM_001271854)	-115	NM_007223	11245	Hs.37196	NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
4.13413-13	chr8	143695340	143695839	+	0	NA	exon (NM_015193, exon 1 of 3)	exon (NM_015193, exon 1 of 3)	244	NM_015193	23237	Hs.40888	NM_015193	ENSG00000198576	ARC	Arg3.1	activity regulated cytoskeleton associated protein	protein-coding
3.30683-2	chr5	55007987	55008486	+	0	NA	promoter-TSS (NM_001282429)	promoter-TSS (NM_001282429)	-73	NM_001282429	153129	Hs.742101	NM_173514	ENSG00000177058	SLC38A9	URLC11	solute carrier family 38 member 9	protein-coding
0.0217692-28	chr18	13139617	13140116	+	0	NA	Intergenic	Intergenic	-78863	NM_181482	753	Hs.731853	NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
0.788339-17	chr16	57122845	57123344	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-3361	NM_152727	221184	Hs.339809	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
1.33122-2	chr3	155523783	155524282	+	0	NA	promoter-TSS (NM_001308229)	promoter-TSS (NM_001308229)	44	NM_001308229	285315	Hs.350846	NM_173657	ENSG00000174928	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
8.86057-15	chr8	101437999	101438498	+	0	NA	Intergenic	Intergenic	43257	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
4.49772-5	chr7	140131723	140132222	+	0	NA	Intergenic	SVA_D|Other|Other	28129	NM_001008749	401409	Hs.583545	NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
4.63442-2	chr4	3956761	3957260	+	0	NA	intron (NR_130742, intron 1 of 3)	CpG	145	NR_130740	348926	Hs.591720	NR_024253	ENSG00000251669	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
38.962	chr2	3680651	3681150	+	0	NA	intron (NM_199235, intron 4 of 7)	intron (NM_199235, intron 4 of 7)	-24886	NM_018436	55821	Hs.97899	NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
8.66461-5	chr17	19140266	19140765	+	0	NA	promoter-TSS (NM_148921)	promoter-TSS (NM_148921)	-175	NM_014964	22905	Hs.743983	NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
1.43271-13	chr2	75301230	75301729	+	0	NA	intron (NM_015727, intron 2 of 3)	intron (NM_015727, intron 2 of 3)	-16460	NR_049796	100846995		NR_049796	ENSG00000263909	MIR5000	-	microRNA 5000	ncRNA
3.06273-8	chr9	72746173	72746672	+	0	NA	intron (NM_001347990, intron 6 of 11)	intron (NM_001347990, intron 6 of 11)	44382	NR_040076	100507244	Hs.556816	NR_040076	ENSG00000204706	MAMDC2-AS1	-	MAMDC2 antisense RNA 1	ncRNA
0.462403-9	chr1	78799114	78799613	+	0	NA	intron (NR_027310, intron 3 of 5)	intron (NR_027310, intron 3 of 5)	104080	NR_027310	149047	Hs.352665	NM_144700	ENSG00000237413	MGC27382	-	uncharacterized MGC27382	ncRNA
6.34512-9	chr4	184579887	184580386	+	0	NA	promoter-TSS (NM_021942)	promoter-TSS (NM_021942)	236	NM_152682	201965	Hs.133337	NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
9.43095-4	chr2	155565566	155566065	+	0	NA	intron (NM_001260508, intron 1 of 1)	intron (NM_001260508, intron 1 of 1)	10722	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding
0.619809-10	chr1	89823787	89824286	+	0	NA	Intergenic	Intergenic	-5400	NM_198460	163351	Hs.254338	NM_198460	ENSG00000183347	GBP6	-	guanylate binding protein family member 6	protein-coding
1.9382-3	chr14	70748886	70749385	+	0	NA	Intergenic	AluSc|SINE|Alu	-34617	NR_003951	145241	Hs.712468	NR_003951	ENSG00000235812	ADAM21P1	ADAM21P	ADAM metallopeptidase domain 21 pseudogene 1	pseudo
3.93619-7	chr11	17408079	17408578	+	0	NA	3' UTR (NM_001166290, exon 2 of 2)	3' UTR (NM_001166290, exon 2 of 2)	1878	NM_000525	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
0.296531-38	chr7	81130515	81131014	+	0	NA	Intergenic	Intergenic	60371	NR_136264	105369146	Hs.730390	NR_136264		LOC105369146	-	uncharacterized LOC105369146	ncRNA
17.6195-5	chr11	31732609	31733108	+	0	NA	intron (NM_001288726, intron 10 of 11)	intron (NM_001288726, intron 10 of 11)	92927	NM_001310161	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
0.655015-2	chr6	89855506	89856005	+	0	NA	promoter-TSS (NM_001010853)	promoter-TSS (NM_001010853)	-14	NM_001010853	135293	Hs.356247	NM_001010853	ENSG00000146281	PM20D2	ACY1L2|bA63L7.3	peptidase M20 domain containing 2	protein-coding
3.18759-4	chr3	171874046	171874545	+	0	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	115951	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
0.51587-24	chr6	26331437	26331936	+	0	NA	Intergenic	tRNA-Trp-TGG|tRNA|tRNA	-33701	NM_001197248	11118	Hs.376046	NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
0.491485-17	chr7	105400591	105401090	+	0	NA	3' UTR (NM_152749, exon 4 of 4)	3' UTR (NM_152749, exon 4 of 4)	-81192	NM_001318229	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
7.05534-10	chr4	128981992	128982491	+	0	NA	promoter-TSS (NM_001278604)	promoter-TSS (NM_001278604)	-180	NM_001278604	55132	Hs.657067	NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein domain family member 1B	protein-coding
0.48177-5	chr9	18331164	18331663	+	0	NA	Intergenic	Intergenic	-142666	NM_001040272	92949	Hs.741483	NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
2.36572	chr4	82392934	82393433	+	0	NA	promoter-TSS (NM_152545)	promoter-TSS (NM_152545)	-101	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
5.78396-2	chrX	130021327	130021826	+	0	NA	intron (NM_006375, intron 2 of 14)	intron (NM_006375, intron 2 of 14)	15715	NM_001281736	10495	Hs.171458	NM_006375	ENSG00000165675	ENOX2	APK1|COVA1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
24.9214	chr7	114978767	114979266	+	0	NA	Intergenic	Intergenic	-107607	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
0.835461-11	chr11	8892338	8892837	+	0	NA	intron (NM_005418, intron 2 of 22)	CpG	39911	NM_005418	6764	Hs.117715	NM_005418	ENSG00000166444	ST5	DENND2B|HTS1|p126	suppression of tumorigenicity 5	protein-coding
0.366845-27	chr4	73284077	73284576	+	0	NA	intron (NM_014243, intron 3 of 21)	MLT1J1|LTR|ERVL-MaLR	150190	NM_014243	9508	Hs.590919	NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
1.53663-5	chr12	9067410	9067909	+	0	NA	intron (NM_004426, intron 1 of 14)	intron (NM_004426, intron 1 of 14)	343	NM_004426	1911	Hs.744902	NM_004426	ENSG00000111752	PHC1	EDR1|HPH1|MCPH11|RAE28	polyhomeotic homolog 1	protein-coding
1.23782-2	chr2	70780341	70780840	+	0	NA	5' UTR (NM_001308158, exon 1 of 6)	5' UTR (NM_001308158, exon 1 of 6)	180	NM_001308158	7039	Hs.170009	NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
3.81952	chr13	105979333	105979832	+	0	NA	Intergenic	AluJr|SINE|Alu	-138634	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
1.56767-3	chr19	14606940	14607439	+	0	NA	promoter-TSS (NM_202469)	promoter-TSS (NM_202469)	-228	NM_202468	10755	Hs.655012	NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
0.296531-53	chr5	92943675	92944174	+	0	NA	Intergenic	Intergenic	12570	NR_031754	100313887		NR_031754	ENSG00000113391	MIR2277	mir-2277	microRNA 2277	ncRNA
9.62574	chr13	114107729	114108228	+	0	NA	promoter-TSS (NM_138430)	promoter-TSS (NM_138430)	-139	NM_138430	113622	Hs.98669	NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
0.371573-26	chr7	76022269	76022945	+	0	NA	intron (NM_080744, intron 9 of 10)	CpG	-4234	NM_007155	7784	Hs.656137	NM_007155	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
9.70616-5	chr1	54535382	54535881	+	0	NA	intron (NM_153035, intron 3 of 4)	intron (NM_153035, intron 3 of 4)	15879	NR_039942	100616315		NR_039942	ENSG00000116205	MIR4781	mir-4781	microRNA 4781	ncRNA
13.6251-2	chr11	116037177	116037676	+	0	NA	Intergenic	MIRb|SINE|MIR	-406508	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
6.14394-5	chr12	62653005	62653504	+	0	NA	promoter-TSS (NM_006313)	promoter-TSS (NM_006313)	-867	NM_001252079	9958	Hs.434951	NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
0.76756-3	chr4	7829891	7830390	+	0	NA	intron (NM_001134647, intron 6 of 17)	MLT1J1|LTR|ERVL-MaLR	74323	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
0.5061-9	chr6	21501113	21501612	+	0	NA	intron (NR_103790, intron 2 of 3)	intron (NR_103790, intron 2 of 3)	10761	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
0.447935-12	chr11	1073235	1073734	+	0	NA	Intergenic	Intergenic	-1391	NM_002457	4583	Hs.315	NM_002457		MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
0.00434512-19	chr6	30749423	30749922	+	0	NA	intron (NR_138037, intron 1 of 3)	intron (NR_138037, intron 1 of 3)	15070	NR_138037	105375013	Hs.348584	NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20 (non-protein coding)	ncRNA
3.75718-5	chr16	53125715	53126214	+	0	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	37019	NM_025134	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
0.25028-17	chr5	94956688	94957187	+	0	NA	exon (NM_199243, exon 1 of 1)	exon (NM_199243, exon 1 of 1)	957	NM_199243	285601	Hs.143315	NM_199243	ENSG00000178015	GPR150	PGR11	G protein-coupled receptor 150	protein-coding
0.338583-19	chr14	103216277	103216776	+	0	NA	Intergenic	Intergenic	-27290	NM_145726	7187	Hs.510528	NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor associated factor 3	protein-coding
4.57175-3	chr2	159395631	159396130	+	0	NA	intron (NM_001005476, intron 2 of 20)	intron (NM_001005476, intron 2 of 20)	82488	NM_001304969	8502	Hs.407580	NM_003628	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
0.070049-52	chr8	143696126	143696625	+	0	NA	promoter-TSS (NM_015193)	promoter-TSS (NM_015193)	-542	NM_015193	23237	Hs.40888	NM_015193	ENSG00000198576	ARC	Arg3.1	activity regulated cytoskeleton associated protein	protein-coding
7.07744-9	chr6	108486856	108487355	+	0	NA	promoter-TSS (NM_003269)	promoter-TSS (NM_003269)	-157	NM_003269	7101	Hs.157688	NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
0.0217692-7	chr4	112320103	112320602	+	0	NA	Intergenic	Intergenic	-746201	NM_152400	132720	Hs.23439	NM_152400	ENSG00000174749	C4orf32	-	chromosome 4 open reading frame 32	protein-coding
4.36519-5	chr9	91933132	91933631	+	0	NA	promoter-TSS (NM_001282690)	promoter-TSS (NM_001282690)	-7	NM_001282689	79048	Hs.59804	NM_024077	ENSG00000187742	SECISBP2	SBP2	SECIS binding protein 2	protein-coding
3.59519-4	chr7	37025336	37025974	+	0	NA	promoter-TSS (NM_001039459)	promoter-TSS (NM_001039459)	216	NM_130442	9844	Hs.434989	NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
3.01899-14	chrX	23760345	23760844	+	0	NA	intron (NM_001033583, intron 1 of 14)	intron (NM_001033583, intron 1 of 14)	810	NM_001330259	23597	Hs.298885	NM_001033583	ENSG00000123130	ACOT9	ACATE2|CGI-16|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
1.4813-7	chr5	10802292	10802791	+	0	NA	Intergenic	Intergenic	-41154	NM_001291963	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
2.5649-11	chr1	200980698	200981197	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	11881	NM_001252100	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
5.59091-14	chr9	128908749	128909248	+	0	NA	Intergenic	MER74A|LTR|ERVL	129196	NR_121584	101929116	Hs.382124	NR_121584	ENSG00000228392	LOC101929116	-	uncharacterized LOC101929116	ncRNA
0.310503-20	chrX	48776146	48776645	+	0	NA	promoter-TSS (NM_006875)	promoter-TSS (NM_006875)	18	NM_006875	11040	Hs.727148	NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
3.44862-16	chr6	17156273	17156772	+	0	NA	Intergenic	Intergenic	54033	NM_001190766	401236	Hs.677399	NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
3.8934-6	chr12	107350295	107350794	+	0	NA	promoter-TSS (NM_001319662)	promoter-TSS (NM_001319662)	-19	NM_001319662	90488	Hs.257664	NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
3.83-2	chr14	95722525	95723024	+	0	NA	intron (NM_024734, intron 1 of 12)	intron (NM_024734, intron 1 of 12)	63471	NM_024734	79789	Hs.301478	NM_024734	ENSG00000165959	CLMN	-	calmin	protein-coding
14.4129	chr11	97574857	97575356	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-1316600	NM_001243271	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
0.0921731-16	chr9	99185746	99186245	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-5326	NM_153695	195828	Hs.494557	NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
1.11259	chrX	95437293	95437792	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	155359	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	BRDTP1	-	bromodomain testis associated pseudogene 1	pseudo
20.4191	chr11	44010742	44011241	+	0	NA	Intergenic	Intergenic	46885	NM_001145033	387763	Hs.530443	NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
0.00869459-14	chr17	57442949	57443448	+	0	NA	promoter-TSS (NR_039882)	promoter-TSS (NR_039882)	-246	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
7.61954-21	chr9	32572202	32572701	+	0	NA	intron (NM_182739, intron 1 of 2)	intron (NM_182739, intron 1 of 2)	731	NM_182739	4712	Hs.493668	NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
3.08035-9	chr11	34008077	34008576	+	0	NA	Intergenic	SVA_D|Other|Other	-64904	NM_203364	4076	Hs.471818	NM_005898	ENSG00000135387	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
1.23205-4	chr1	169072590	169073089	+	0	NA	promoter-TSS (NR_135799)	promoter-TSS (NR_135799)	-523	NR_135799	101928596	Hs.308463	NR_135799	ENSG00000237707	LOC101928596	-	uncharacterized LOC101928596	ncRNA
1.46302-6	chr7	149523457	149523956	+	0	NA	intron (NM_198455, intron 102 of 109)	intron (NM_198455, intron 102 of 109)	-11750	NM_001099220	643641	Hs.731923	NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
1.12946-3	chr2	159357867	159358366	+	0	NA	intron (NM_001005476, intron 1 of 20)	intron (NM_001005476, intron 1 of 20)	44724	NM_001304969	8502	Hs.407580	NM_003628	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
8.69666-18	chr9	132316903	132317402	+	0	NA	Intergenic	Intergenic	-54011	NM_001286796	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
1.0902-9	chr1	199432574	199433073	+	0	NA	Intergenic	L1M1|LINE|L1	-444730	NR_110525	102800316	Hs.568480	NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
0.540393-13	chr9	138999764	139000263	+	0	NA	Intergenic	Intergenic	10264	NM_001256526	90120	Hs.287411	NM_152833	ENSG00000238227	C9orf69	-	chromosome 9 open reading frame 69	protein-coding
0.0217692-3	chr11	65640945	65641444	+	0	NA	promoter-TSS (NR_037718)	promoter-TSS (NR_037718)	-789	NR_037718	30008	Hs.731454	NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin like extracellular matrix protein 2	protein-coding
12.6122	chr3	177239042	177239541	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	79582	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
0.462403	chr5	139926954	139927453	+	0	NA	promoter-TSS (NM_003732)	promoter-TSS (NM_003732)	-48	NM_003732	8637	Hs.594084	NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
0.996329-33	chr7	26698296	26698795	+	0	NA	Intergenic	Intergenic	19841	NM_001302625	285941	Hs.413394	NM_001145531		C7orf71	-	chromosome 7 open reading frame 71	protein-coding
3.32547	chr14	92588155	92589090	+	0	NA	promoter-TSS (NM_004545)	promoter-TSS (NM_004545)	306	NM_001322272	53981	Hs.657632	NM_017437	ENSG00000165934	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2	protein-coding
3.8405-6	chrX	99972355	99972854	+	0	NA	intron (NM_080737, intron 1 of 18)	intron (NM_080737, intron 1 of 18)	13918	NM_001174068	94121	Hs.592224	NM_080737	ENSG00000102362	SYTL4	SLP4	synaptotagmin like 4	protein-coding
6.7162-6	chr15	80126705	80127204	+	0	NA	Intergenic	Intergenic	62385	NR_037654	10588	Hs.194294	NM_006441	ENSG00000136371	MTHFS	HsT19268	methenyltetrahydrofolate synthetase	protein-coding
10.9205-7	chr6	35699817	35700316	+	0	NA	non-coding (NR_027117, exon 5 of 10)	non-coding (NR_027117, exon 5 of 10)	-3706	NM_001145775	2289	Hs.407190	NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FK506 binding protein 5	protein-coding
0.888424-38	chr4	125825666	125826165	+	0	NA	Intergenic	Intergenic	-192028	NM_020337	57182	Hs.480694	NM_020337	ENSG00000151458	ANKRD50	-	ankyrin repeat domain 50	protein-coding
0.76756-16	chr12	639445	639944	+	0	NA	intron (NM_173593, intron 1 of 19)	intron (NM_173593, intron 1 of 19)	55958	NR_134624	105369595	Hs.504422	NR_134624		LOC105369595	-	uncharacterized LOC105369595	ncRNA
0.0305075-44	chr1	44031386	44031885	+	0	NA	intron (NM_001329138, intron 6 of 36)	CpG	35104	NM_130440	5792	Hs.272062	NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase, receptor type F	protein-coding
16.9897-3	chr3	189900855	189901354	+	0	NA	Intergenic	Intergenic	-60878	NM_001134418	55214	Hs.374191	NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
0.376307-28	chr6	47623868	47624367	+	0	NA	promoter-TSS (NM_153839)	promoter-TSS (NM_153839)	-209	NM_153839	222611	Hs.724860	NM_153839	ENSG00000164393	ADGRF2	GPR111|PGR20|hGPCR35	adhesion G protein-coupled receptor F2	protein-coding
1.60522-3	chr2	121427024	121427523	+	0	NA	Intergenic	Intergenic	-127594	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
0.390538-15	chr12	93322647	93323146	+	0	NA	5' UTR (NM_003566, exon 1 of 29)	5' UTR (NM_003566, exon 1 of 29)	211	NM_003566	8411	Hs.567367	NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
7.32828-4	chr9	123476387	123477125	+	0	NA	promoter-TSS (NM_001080497)	promoter-TSS (NM_001080497)	9	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
6.19789-3	chr4	26240129	26240628	+	0	NA	Intergenic	Intergenic	-80954	NM_005349	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
9.70616-11	chr14	56592342	56592841	+	0	NA	intron (NM_021255, intron 1 of 5)	intron (NM_021255, intron 1 of 5)	7498	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
26.925-2	chr15	99804981	99805480	+	0	NA	intron (NR_135759, intron 2 of 7)	L2a|LINE|L2	7500	NR_073383	7190	Hs.656611	NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
1.66216-4	chr11	72859294	72859793	+	0	NA	Intergenic	Intergenic	-6400	NM_014824	9873	Hs.744959	NM_014824	ENSG00000137478	FCHSD2	NWK|SH3MD3	FCH and double SH3 domains 2	protein-coding
1.54282-13	chr2	5161231	5161730	+	0	NA	Intergenic	Intergenic	-457668	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
8.79426-4	chr6	3542099	3542598	+	0	NA	Intergenic	Intergenic	-85555	NM_001286456	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
23.3068	chr6	28351007	28351506	+	0	NA	promoter-TSS (NR_133668)	promoter-TSS (NR_133668)	-40	NR_133668	9753	Hs.134816	NM_014724	ENSG00000158691	ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
4.67246-11	chr11	76432754	76433253	+	0	NA	promoter-TSS (NR_024042)	promoter-TSS (NR_024042)	-170	NR_024042	390226	Hs.440026	NR_024042		GUCY2EP	GC-E|GCD|GUCY2E	guanylate cyclase 2E, pseudogene	pseudo
3.20572-5	chr5	44845784	44846283	+	0	NA	Intergenic	Intergenic	37006	NM_016640	10884	Hs.124165	NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
1.24939-7	chr8	69244014	69244513	+	0	NA	promoter-TSS (NR_038877)	promoter-TSS (NR_038877)	-537	NR_038877	286189	Hs.593427	NR_038877	ENSG00000248801	C8orf34-AS1	-	C8orf34 antisense RNA 1	ncRNA
3.47754-7	chr8	102803010	102803509	+	0	NA	5' UTR (NM_032041, exon 1 of 4)	5' UTR (NM_032041, exon 1 of 4)	180	NM_032041	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
0.0833099-40	chr1	241520287	241520786	+	0	NA	promoter-TSS (NM_001282773)	promoter-TSS (NM_001282773)	-6	NM_002924	6000	Hs.655739	NM_002924	ENSG00000182901	RGS7	-	regulator of G-protein signaling 7	protein-coding
1.31944-9	chr12	20777576	20778075	+	0	NA	intron (NM_001244683, intron 4 of 14)	intron (NM_001244683, intron 4 of 14)	53027	NM_001244683	5139	Hs.386791	NM_000921	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB	phosphodiesterase 3A	protein-coding
18.2391-5	chr1	226776573	226777072	+	0	NA	intron (NM_001003665, intron 1 of 3)	intron (NM_001003665, intron 1 of 3)	40321	NM_001003665	375057	Hs.116827	NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
2.26945-15	chr21	43944773	43945272	+	0	NA	intron (NM_018964, intron 3 of 20)	MER21C|LTR|ERVL	11059	NM_001320537	54020	Hs.547009	NM_018964	ENSG00000160190	SLC37A1	G3PP	solute carrier family 37 member 1	protein-coding
8.15309	chr15	96875299	96875798	+	0	NA	promoter-TSS (NR_031715)	promoter-TSS (NR_031715)	-246	NM_001145156	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
6.16185	chr9	136845585	136846084	+	0	NA	intron (NM_001134398, intron 1 of 29)	intron (NM_001134398, intron 1 of 29)	11612	NM_001134398	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
2.52588-23	chr1	244394733	244395232	+	0	NA	Intergenic	Intergenic	-120955	NM_001276348	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
30.0612	chr4	154369136	154369734	+	0	NA	Intergenic	Intergenic	-18063	NM_015196	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
6.36388-3	chr4	70689135	70689634	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	36486	NM_005420	6783	Hs.479898	NM_005420	ENSG00000109193	SULT1E1	EST|EST-1|ST1E1|STE	sulfotransferase family 1E member 1	protein-coding
1.21478-18	chr1	110074826	110075325	+	0	NA	Intergenic	Intergenic	-7419	NM_031936	83873	Hs.709782	NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
0.520764-14	chr2	70338871	70339370	+	0	NA	Intergenic	Intergenic	13328	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
0.310503-11	chrX	46433331	46433830	+	0	NA	exon (NM_019886, exon 1 of 2)	exon (NM_019886, exon 1 of 2)	458	NM_019886	56548	Hs.129955	NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
2.91579-4	chr15	89115023	89115522	+	0	NA	Intergenic	Intergenic	-25338	NR_135742	55070	Hs.655064	NM_017996	ENSG00000140543	DET1	-	de-etiolated homolog 1 (Arabidopsis)	protein-coding
0.721166-8	chr18	52967784	52968283	+	0	NA	intron (NM_001243228, intron 8 of 19)	intron (NM_001243228, intron 8 of 19)	1819	NM_001243236	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
0.245682-12	chr14	76818925	76819424	+	0	NA	Intergenic	CpG	-18516	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
12.5026-2	chr18	69117409	69117908	+	0	NA	Intergenic	Intergenic	128534	NR_038326	100505776	Hs.202072	NR_038325	ENSG00000260676	LINC01541	UTAT39	long intergenic non-protein coding RNA 1541	ncRNA
6.51695-2	chr2	10515909	10516408	+	0	NA	intron (NM_001258359, intron 1 of 4)	MSTB|LTR|ERVL-MaLR	7268	NM_001258359	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
6.86133-5	chrUn_gl000225	136951	137450	+	0	NA	NA	Intergenic	NA	NA								
2.47952-6	chr15	37330872	37331371	+	0	NA	intron (NM_170677, intron 7 of 12)	intron (NM_170677, intron 7 of 12)	59441	NM_172315	4212	Hs.510989	NM_002399	ENSG00000134138	MEIS2	HsT18361|MRG1	Meis homeobox 2	protein-coding
0.132283-5	chr2	46046240	46046739	+	0	NA	intron (NM_005400, intron 1 of 14)	MIR|SINE|MIR	167446	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
0.123337-43	chr11	62094066	62094565	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10459	NM_025080	80150	Hs.535326	NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase like 1	protein-coding
0.840728-12	chr20	49241093	49241592	+	0	NA	intron (NR_110890, intron 2 of 21)	intron (NR_110890, intron 2 of 21)	-10020	NR_031634	100302146		NR_031634	ENSG00000221091	MIR1302-5	MIRN1302-5|hsa-mir-1302-5	microRNA 1302-5	ncRNA
5.81699-8	chr5	95194405	95194904	+	0	NA	non-coding (NR_026936, exon 3 of 3)	non-coding (NR_026936, exon 3 of 3)	6718	NR_026936	202299	Hs.8373	NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
1.43271	chr11	67914439	67914938	+	0	NA	Intergenic	Intergenic	-25830	NM_001277	1119	Hs.77221	NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK	choline kinase alpha	protein-coding
1.9382-6	chr6	167188189	167188688	+	0	NA	intron (NM_001318936, intron 2 of 22)	intron (NM_001318936, intron 2 of 22)	87601	NM_001006932	6196	Hs.655277	NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
0.644927-4	chr8	9465866	9466365	+	0	NA	intron (NM_003747, intron 2 of 26)	intron (NM_003747, intron 2 of 26)	52670	NM_003747	8658	Hs.370267	NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
1.17475-23	chr18	1361957	1362456	+	0	NA	Intergenic	Intergenic	-2576	NR_110327	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
0.118872-20	chr9	112811142	112811641	+	0	NA	intron (NM_001198656, intron 1 of 4)	intron (NM_001198656, intron 1 of 4)	513	NM_001198656	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding
1.11259-17	chr1	247094269	247094768	+	0	NA	intron (NR_136586, intron 1 of 36)	CpG	208	NM_015446	25909	Hs.300887	NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
0.0921731-15	chr7	105817003	105817502	+	0	NA	Intergenic	Intergenic	-64159	NM_006754	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
0.510982-15	chr5	108716334	108716833	+	0	NA	intron (NM_014819, intron 3 of 9)	AluSz|SINE|Alu	29092	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
3.7059-4	chr10	65471934	65472433	+	0	NA	Intergenic	Intergenic	-190348	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
2.22573-7	chr2	8824958	8825457	+	0	NA	TTS (NM_002166)	TTS (NM_002166)	3094	NM_002166	3398	Hs.180919	NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2, HLH protein	protein-coding
2.61219-15	chr16	446470	446969	+	0	NA	promoter-TSS (NM_001286436)	promoter-TSS (NM_001286436)	-36	NM_001286436	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
5.52842-7	chr13	59612666	59613165	+	0	NA	Intergenic	Intergenic	-805664	NR_132367	106144531	Hs.736640	NR_132367	ENSG00000232954	LINC00374	-	long intergenic non-protein coding RNA 374	ncRNA
1.86419-7	chr12	67721165	67721664	+	0	NA	Intergenic	L2a|LINE|L2	58353	NM_001329674	55832	Hs.546407	NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
5.60667-9	chr2	170220088	170220587	+	0	NA	Intergenic	Intergenic	-1215	NM_004525	4036	Hs.657729	NM_004525	ENSG00000081479	LRP2	DBS|GP330	LDL receptor related protein 2	protein-coding
1.35489-4	chr3	158520176	158520675	+	0	NA	intron (NM_001167903, intron 1 of 14)	intron (NM_001167903, intron 1 of 14)	710	NM_001289407	64747	Hs.58663	NM_022736	ENSG00000118855	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
0.69051-5	chr2	99422569	99423068	+	0	NA	intron (NM_207362, intron 7 of 9)	intron (NM_207362, intron 7 of 9)	-34457	NR_126337	101927070	Hs.469395	NR_126337		LOC101927070	-	uncharacterized LOC101927070	ncRNA
15.376-2	chr1	29211413	29211912	+	0	NA	Intergenic	Intergenic	-1941	NM_203342	2035	Hs.175437	NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
5.0307-10	chr8	141169624	141170123	+	0	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	-59239	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
4.42493-3	chr1	167522625	167523124	+	0	NA	exon (NM_003851, exon 1 of 4)	exon (NM_003851, exon 1 of 4)	182	NM_003851	8804	Hs.5710	NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
0.888424-33	chr11	120418511	120419010	+	0	NA	intron (NM_014619, intron 1 of 20)	intron (NM_014619, intron 1 of 20)	-16385	NM_001282473	2900	Hs.538738	NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
2.28413	chr14	103572029	103572528	+	0	NA	intron (NM_001077594, intron 6 of 10)	MIR|SINE|MIR	5797	NM_001077594	91828	Hs.37712	NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
1.07905-17	chr6	80579221	80579720	+	0	NA	Intergenic	Intergenic	-57507	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
5.00313-9	chr16	9185116	9185615	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-172	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
0.347983-9	chr16	71517900	71518399	+	0	NA	intron (NM_006961, intron 2 of 5)	L2b|LINE|L2	5105	NM_006961	7567	Hs.660076	NM_006961	ENSG00000157429	ZNF19	KOX12	zinc finger protein 19	protein-coding
0.824945-2	chr4	90166565	90167064	+	0	NA	3' UTR (NM_198281, exon 2 of 2)	3' UTR (NM_198281, exon 2 of 2)	62347	NM_198281	285513	Hs.100912	NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
6.92504-17	chr8	80681035	80681534	+	0	NA	TTS (NR_110954)	TTS (NR_110954)	907	NR_125410	101927067	Hs.144030	NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
0.338583-34	chr20	56884568	56885067	+	0	NA	promoter-TSS (NM_020673)	promoter-TSS (NM_020673)	46	NM_020673	57403	Hs.529044	NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
8.82729-2	chr11	75990586	75991085	+	0	NA	Intergenic	Intergenic	-73261	NM_004626	7481	Hs.108219	NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
11.9314-3	chr7	25010858	25011552	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	8626	NM_015550	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
1.4752-6	chr2	15282297	15282796	+	0	NA	Intergenic	Intergenic	418926	NM_015909	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
5.85027-4	chr10	46298324	46298823	+	0	NA	Intergenic	L2a|LINE|L2	44348	NM_001276343	119016	Hs.314437	NM_133446	ENSG00000188234	AGAP4	AGAP-4|AGAP-8|AGAP8|CTGLF1|CTGLF5|MRIP2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 4	protein-coding
0.649968-2	chr11	130184002	130184501	+	0	NA	intron (NM_014155, intron 1 of 5)	CpG	356	NM_001301099	29068	Hs.721470	NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
0.419142-33	chr12	58299013	58299512	+	0	NA	Intergenic	Intergenic	30685	NR_038269	100506844	Hs.90286	NR_038269		LOC100506844	-	uncharacterized LOC100506844	ncRNA
0.798767-16	chr5	102898348	102898847	+	0	NA	promoter-TSS (NM_001300741)	promoter-TSS (NM_001300741)	-95	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding
2.26214-10	chr16	11350984	11351483	+	0	NA	Intergenic	Intergenic	-1194	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
7.9588-11	chr5	43807750	43808249	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-204667	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
0.400052-12	chr19	45972813	45973312	+	0	NA	intron (NM_006732, intron 1 of 3)	intron (NM_006732, intron 1 of 3)	1809	NM_006732	2354	Hs.590958	NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
8.63279-3	chr16	54695979	54696478	+	0	NA	Intergenic	L1P3|LINE|L1	185917	NR_134971	101927480	Hs.499208	NR_134971	ENSG00000245694	LOC101927480	-	uncharacterized LOC101927480	ncRNA
3.25139-8	chr5	149340040	149340539	+	0	NA	promoter-TSS (NM_000112)	promoter-TSS (NM_000112)	-11	NM_000112	1836	Hs.302738	NM_000112	ENSG00000155850	SLC26A2	D5S1708|DTD|DTDST|EDM4|MST153|MSTP157	solute carrier family 26 member 2	protein-coding
8.96196-12	chr12	106541693	106542192	+	0	NA	Intergenic	Intergenic	-8131	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
2.72459	chr6	43276315	43276814	+	0	NA	promoter-TSS (NM_206922)	promoter-TSS (NM_206922)	-34	NM_206922	401262	Hs.653165	NM_206922	ENSG00000146215	CRIP3	TLP|TLP-A|bA480N24.2	cysteine rich protein 3	protein-coding
1.73277	chr17	7117584	7118083	+	0	NA	intron (NR_135527, intron 3 of 20)	CpG	-2611	NM_001270447	37	Hs.437178	NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase, very long chain	protein-coding
5.21434-10	chr1	31895485	31895984	+	0	NA	intron (NM_001199039, intron 2 of 10)	intron (NM_001199039, intron 2 of 10)	9074	NM_018565	347735	Hs.270655	NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
6.92504-20	chr16	84208831	84209330	+	0	NA	intron (NM_178452, intron 10 of 11)	intron (NM_178452, intron 10 of 11)	11596	NM_001243159	9013	Hs.153022	NM_005679	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein-coding
0.996329-14	chr10	36223336	36223835	+	0	NA	Intergenic	Intergenic	156355	NR_110138	102578074		NR_110138	ENSG00000280719	PCAT5	LINC01452|TPCAT-10-36067	prostate cancer associated transcript 5 (non-protein coding)	ncRNA
0.141246-3	chr7	22134008	22134507	+	0	NA	Intergenic	Intergenic	-148715	NM_018719	55536	Hs.744069	NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
0.245682-32	chr9	34899490	34899989	+	0	NA	Intergenic	Intergenic	-3964	NM_001309427	100129969	Hs.571602	NM_001309426	ENSG00000187791	FAM205C	FAM205CP	family with sequence similarity 205 member C	protein-coding
2.89883-20	chr1	84556103	84556602	+	0	NA	intron (NM_002731, intron 1 of 9)	MLT1G3|LTR|ERVL-MaLR	12694	NM_002731	5567	Hs.487325	NM_002731	ENSG00000142875	PRKACB	PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
3.69572-6	chr22	42062638	42063137	+	0	NA	Intergenic	CpG	22026	NM_005008	4809	Hs.182255	NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding
14.7756-2	chr5	73722243	73722742	+	0	NA	intron (NR_126354, intron 2 of 2)	intron (NR_126354, intron 2 of 2)	104181	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
18.0688	chr22	19085065	19085564	+	0	NA	intron (NM_005137, intron 1 of 9)	intron (NM_005137, intron 1 of 9)	24653	NR_033674	9993	Hs.517357	NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
3.81952-7	chr2	99525939	99526438	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26496	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
1.13509	chr4	102651601	102652100	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-59914	NM_001127507	55024	Hs.480400	NM_017935	ENSG00000153064	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding
0.296531-47	chr6	130991241	130991740	+	0	NA	Intergenic	L4|LINE|RTE	-157055	NM_001195597	100507203	Hs.388715	NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
1.48742-7	chr1	210111172	210112103	+	0	NA	intron (NM_001146264, intron 1 of 8)	CpG	118	NR_027459	255928	Hs.658866	NM_153262	ENSG00000143469	SYT14	SCAR11|sytXIV	synaptotagmin 14	protein-coding
0.118872-6	chr7	105517031	105517530	+	0	NA	promoter-TSS (NM_152749)	promoter-TSS (NM_152749)	-249	NM_020725	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
3.24222-2	chr6	30294146	30294645	+	0	NA	promoter-TSS (NR_052012).6	promoter-TSS (NR_052012).6	-226	NM_021253	56658	Hs.413493	NM_021253	ENSG00000204599	TRIM39	RNF23|TFP|TRIM39B	tripartite motif containing 39	protein-coding
23.0539-2	chrX	10277733	10278232	+	0	NA	Intergenic	LTR40A1|LTR|ERVL	152997	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
0.168249-14	chr16	81490866	81491365	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	12340	NM_198390	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
0.883098	chr8	127412522	127413021	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	75031	NR_125421	101927657	Hs.552133	NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
1.92465-11	chr9	100745200	100745699	+	0	NA	promoter-TSS (NM_006401)	promoter-TSS (NM_006401)	-40	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
2.22573-9	chr18	41143701	41144200	+	0	NA	Intergenic	Intergenic	-286335	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding
4.36519-21	chr1	34628727	34629226	+	0	NA	intron (NM_052896, intron 1 of 69)	CpG	1899	NM_001281956	114784	Hs.656915	NM_052896	ENSG00000121904	CSMD2	dJ1007G16.1|dJ1007G16.2|dJ947L8.1	CUB and Sushi multiple domains 2	protein-coding
8.26814-27	chr6	124355187	124355686	+	0	NA	intron (NM_153355, intron 1 of 5)	L1PA17|LINE|L1	230445	NM_001300738	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
1.53663-15	chr19	41903140	41903639	+	0	NA	promoter-TSS (NM_001164783)	promoter-TSS (NM_001164783)	-133	NM_020158	56915	Hs.283741	NM_020158	ENSG00000077348	EXOSC5	RRP41B|RRP46|Rrp46p|hRrp46p|p12B	exosome component 5	protein-coding
1.92465-15	chr14	31731135	31731634	+	0	NA	Intergenic	Intergenic	-54655	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
19.0658-3	chr6	93609862	93610361	+	0	NA	Intergenic	Intergenic	519189	NM_001288629	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
10.9745	chr4	179699586	179700085	+	0	NA	Intergenic	Intergenic	-870745	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
49.8297-4	chr5	126015754	126016253	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	48589	NM_207408	389320	Hs.177983	NM_207408	ENSG00000196900	TEX43	C5orf48|Tseg7	testis expressed 43	protein-coding
0.570004-13	chr20	13283199	13283698	+	0	NA	Intergenic	Intergenic	-63114	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
1.17475-7	chr20	54937808	54938307	+	0	NA	intron (NM_080821, intron 1 of 2)	intron (NM_080821, intron 1 of 2)	4074	NM_080821	116151	Hs.143736	NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
8.41638-4	chr17	80482468	80482967	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	5123	NM_004514	3607	Hs.591140	NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
2.47952-4	chr3	128444895	128445394	+	0	NA	5' UTR (NM_004637, exon 1 of 6)	5' UTR (NM_004637, exon 1 of 6)	165	NM_004637	7879	Hs.684374	NM_004637	ENSG00000075785	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
1.39063-6	chr1	159976033	159976532	+	0	NA	Intergenic	Intergenic	25501	NM_145167	93183	Hs.552810	NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
0.48177-2	chr20	50366199	50366698	+	0	NA	intron (NM_006045, intron 1 of 27)	AluSx1|SINE|Alu	18502	NM_006045	10079	Hs.649234	NM_006045	ENSG00000054793	ATP9A	ATPIIA	ATPase phospholipid transporting 9A (putative)	protein-coding
7.05534-3	chrX	118740175	118740674	+	0	NA	promoter-TSS (NM_001173487)	promoter-TSS (NM_001173487)	-578	NM_001173487	55922	Hs.437084	NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
0.660068-2	chr4	171295904	171296403	+	0	NA	Intergenic	L1PA15-16|LINE|L1	148411	NR_125889	101928223	Hs.254617	NR_125889		LINC01612	-	long intergenic non-protein coding RNA 1612	ncRNA
0.296531-72	chr11	61666479	61666978	+	0	NA	intron (NM_013401, intron 9 of 9)	intron (NM_013401, intron 9 of 9)	-7711	NM_021727	3995	Hs.21765	NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
14.0121-2	chr2	39015555	39016054	+	0	NA	Intergenic	Intergenic	10477	NM_024775	79833	Hs.143818	NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
0.985417-12	chr6	15026918	15027417	+	0	NA	Intergenic	Intergenic	-219039	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
3.39135-15	chr17	7760964	7761463	+	0	NA	promoter-TSS (NM_001320924)	promoter-TSS (NM_001320924)	-4	NM_032356	84316	Hs.565094	NM_032356	ENSG00000183011	NAA38	LSMD1|PFAAP2	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding
0.163737-16	chr3	11551462	11551961	+	0	NA	intron (NM_001136031, intron 17 of 17)	intron (NM_001136031, intron 17 of 17)	58687	NM_001128221	9686	Hs.740389	NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
1.06793-11	chr3	194353892	194354391	+	0	NA	promoter-TSS (NM_001011655)	promoter-TSS (NM_001011655)	9	NM_001166305	93109	Hs.478729	NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
0.675262-23	chr22	45713528	45714027	+	0	NA	intron (NM_017911, intron 1 of 8)	MLT1H2|LTR|ERVL-MaLR	7992	NM_017911	55007	Hs.265018	NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
11.5614	chr1	248100165	248100664	+	0	NA	promoter-TSS (NM_001304535)	promoter-TSS (NM_001304535)	83	NM_001304535	284521	Hs.372936	NM_175911	ENSG00000196071	OR2L13	OR2L14	olfactory receptor family 2 subfamily L member 13	protein-coding
1.79799-11	chr17	71497500	71497999	+	0	NA	intron (NM_001144952, intron 2 of 44)	intron (NM_001144952, intron 2 of 44)	-12073	NR_135635	101928251	Hs.434726	NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
1.85752-3	chr5	34026121	34026620	+	0	NA	intron (NM_030945, intron 4 of 5)	L1M7|LINE|L1	17001	NM_181435	114899	Hs.171929	NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and tumor necrosis factor related protein 3	protein-coding
8.86057-8	chr9	38720227	38720726	+	0	NA	Intergenic	Intergenic	99391	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201 member A	ncRNA
3.99027-19	chr14	46105153	46105652	+	0	NA	Intergenic	SVA_B|Other|Other	-382797	NM_018353	55320	Hs.732769	NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
0.163737-27	chr1	249152981	249153480	+	0	NA	promoter-TSS (NM_001136036)	promoter-TSS (NM_001136036)	85	NM_001193328	55657	Hs.377705	NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
4.24812-6	chr5	34722210	34722709	+	0	NA	intron (NM_001145525, intron 4 of 19)	MLT1B|LTR|ERVL-MaLR	34795	NM_001145523	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.0612309-9	chr11	84633888	84634387	+	0	NA	exon (NM_001364, exon 1 of 23)	exon (NM_001364, exon 1 of 23)	328	NM_001300983	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
0.0305075-21	chr1	37943371	37943870	+	0	NA	intron (NM_025079, intron 2 of 5)	intron (NM_025079, intron 2 of 5)	-2211	NR_106790	102465438		NR_106790	ENSG00000163874	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
3.10691	chr5	14458499	14458998	+	0	NA	intron (NM_007118, intron 34 of 56)	intron (NM_007118, intron 34 of 56)	-123143	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding
9.66576-9	chr9	140121865	140122364	+	0	NA	promoter-TSS (NM_001190228)	promoter-TSS (NM_001190228)	96	NM_001190228	643596	Hs.730186	NM_001190228	ENSG00000233198	RNF224	-	ring finger protein 224	protein-coding
1.73925-6	chr17	49243932	49244431	+	0	NA	promoter-TSS (NM_001018138)	promoter-TSS (NM_001018138)	98	NM_001018138	4831	Hs.463456	NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
0.584886-22	chr22	24110408	24110907	+	0	NA	promoter-TSS (NM_001301339)	promoter-TSS (NM_001301339)	-498	NM_213720	400916	Hs.66915	NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
0.101054-39	chr14	96727276	96727775	+	0	NA	intron (NM_000710, intron 1 of 2)	L2a|LINE|L2	4978	NM_000710	623	Hs.525572	NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
6.77781-3	chr12	8614608	8615107	+	0	NA	intron (NM_001007033, intron 3 of 5)	LTR5_Hs|LTR|ERVK	6266	NM_001007033	93978	Hs.591147	NM_001007033	ENSG00000205846	CLEC6A	CLEC4N|CLECSF10|dectin-2	C-type lectin domain family 6 member A	protein-coding
11.4327-5	chr13	91272695	91273194	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	127402	NR_120414	101927224	Hs.385801	NR_120414		LINC01049	-	long intergenic non-protein coding RNA 1049	ncRNA
11.4448-3	chrUn_gl000225	61208	61707	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
6.00326-4	chr13	107188633	107189132	+	0	NA	Intergenic	CpG-6584	-1494	NM_004093	1948	Hs.149239	NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5	ephrin B2	protein-coding
0.0261362-27	chr13	27546169	27546668	+	0	NA	Intergenic	L2c|LINE|L2	-153252	NR_046547	100874070	Hs.524923	NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
2.47184-3	chr13	63772136	63772635	+	0	NA	intron (NR_126409, intron 5 of 6)	intron (NR_126409, intron 5 of 6)	129842	NR_126409	104355293	Hs.121439	NR_126409	ENSG00000227564	LINC00376	-	long intergenic non-protein coding RNA 376	ncRNA
0.25028-43	chr17	67410518	67411017	+	0	NA	promoter-TSS (NM_002758)	promoter-TSS (NM_002758)	-71	NM_002758	5608	Hs.49329	NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
0.599818-16	chr20	13768790	13769289	+	0	NA	intron (NR_029377, intron 2 of 11)	intron (NR_029377, intron 2 of 11)	3367	NR_029377	79133	Hs.472165	NM_024120	ENSG00000101247	NDUFAF5	C20orf7|bA526K24.2|dJ842G6.1	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein-coding
0.649968-36	chr12	68108125	68108624	+	0	NA	intron (NR_110063, intron 4 of 4)	LTR9B|LTR|ERV1	14881	NR_110063	101927901	Hs.369609	NR_110063	ENSG00000255970	LOC101927901	-	uncharacterized LOC101927901	ncRNA
0.264104-13	chr20	37359940	37360439	+	0	NA	Intergenic	Intergenic	7084	NM_080552	140679	Hs.179080	NM_080552	ENSG00000101438	SLC32A1	VGAT|VIAAT	solute carrier family 32 member 1	protein-coding
0.172766-21	chr1	101300471	101300970	+	0	NA	Intergenic	Intergenic	60015	NR_048570	2135	Hs.357637	NM_001439	ENSG00000162694	EXTL2	EXTR2	exostosin like glycosyltransferase 2	protein-coding
0.634863-11	chr2	131622309	131622808	+	0	NA	Intergenic	Intergenic	-51666	NM_015320	50649	Hs.469935	NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
0.560111-11	chr21	43988790	43989289	+	0	NA	intron (NM_018964, intron 18 of 20)	intron (NM_018964, intron 18 of 20)	46166	NR_131192	101928233	Hs.534827	NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
0.357404	chr6	1604418	1604917	+	0	NA	Intergenic	CpG	-1099	NR_125804	101927703	Hs.607964	NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript (non-protein coding)	ncRNA
52.3359	chr1	246581570	246582069	+	0	NA	intron (NM_001167740, intron 1 of 11)	LTR1|LTR|ERV1	-1105	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
0.861861	chr9	42081375	42081874	+	0	NA	Intergenic	MER61D|LTR|ERV1	-62040	NR_003670	654466	Hs.536967	NM_001039113		FGF7P3	KGFLP2	fibroblast growth factor 7 pseudogene 3	pseudo
11.107	chr5	18792260	18792759	+	0	NA	Intergenic	LTR18A|LTR|ERVL	985126	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
1.15205-3	chr10	98929564	98930063	+	0	NA	intron (NR_037909, intron 11 of 14)	intron (NR_037909, intron 11 of 14)	15870	NM_003061	6585	Hs.632082	NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
5.0307-7	chr8	64091762	64092261	+	0	NA	intron (NR_102434, intron 3 of 3)	SVA_D|Other|Other	10449	NM_001277818	253943	Hs.491861	NM_152758	ENSG00000185728	YTHDF3	-	YTH N6-methyladenosine RNA binding protein 3	protein-coding
3.85103-32	chr2	159274033	159274532	+	0	NA	intron (NM_001301685, intron 1 of 6)	intron (NM_001301685, intron 1 of 6)	38983	NM_138803	130940	Hs.668597	NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
1.21478-17	chr16	70052097	70052596	+	0	NA	intron (NR_003610, intron 12 of 25)	intron (NR_003610, intron 12 of 25)	-11903	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
24.2713	chr2	168689237	168689736	+	0	NA	intron (NM_020981, intron 1 of 1)	intron (NM_020981, intron 1 of 1)	14304	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	beta-1,3-galactosyltransferase 1	protein-coding
10.6956	chr1	165061742	165062241	+	0	NA	Intergenic	LTR5B|LTR|ERVK	263487	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
0.101054-24	chr17	77179337	77179836	+	0	NA	intron (NM_001082575, intron 4 of 14)	CpG	108567	NM_001042573	64772	Hs.29288	NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
14.9485-2	chr11	12540420	12540919	+	0	NA	intron (NM_018222, intron 12 of 12)	intron (NM_018222, intron 12 of 12)	141643	NM_018222	55742	Hs.432914	NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
10.2411-5	chr11	35653742	35654241	+	0	NA	Intergenic	Intergenic	14256	NM_014344	24147	Hs.39384	NM_014344	ENSG00000179431	FJX1	-	four jointed box 1	protein-coding
0.0130484-51	chr8	61972153	61972652	+	0	NA	Intergenic	Intergenic	-92095	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
1.41463-24	chr20	30459778	30460277	+	0	NA	intron (NM_001008409, intron 2 of 14)	L2a|LINE|L2	-1480	NM_080611	128853	Hs.434108	NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
0.329203-18	chr14	104376504	104377003	+	0	NA	Intergenic	Intergenic	11150	NM_001127393	9556	Hs.109052	NM_004894	ENSG00000156411	C14orf2	MP68|PLPM	chromosome 14 open reading frame 2	protein-coding
2.36572-7	chr2	111527879	111528378	+	0	NA	intron (NM_001142807, intron 2 of 17)	intron (NM_001142807, intron 2 of 17)	37978	NM_001142807	55289	Hs.253320	NM_018308	ENSG00000153093	ACOXL	-	acyl-CoA oxidase-like	protein-coding
1.79799-5	chr12	3783152	3783651	+	0	NA	intron (NM_032680, intron 6 of 10)	intron (NM_032680, intron 6 of 10)	78965	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
4.92144-11	chr3	112275427	112275926	+	0	NA	intron (NM_022488, intron 2 of 11)	SVA_D|Other|Other	5134	NM_001278712	64422	Hs.477126	NM_022488	ENSG00000144848	ATG3	APG3|APG3-LIKE|APG3L|PC3-96	autophagy related 3	protein-coding
0.0436481-15	chr18	56245491	56245990	+	0	NA	intron (NM_052947, intron 4 of 12)	intron (NM_052947, intron 4 of 12)	-22112	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
12.6122-3	chr2	188755298	188755797	+	0	NA	Intergenic	LTR43|LTR|ERV1	-336315	NM_001329239	7035	Hs.516578	NM_006287	ENSG00000003436	TFPI	EPI|LACI|TFI|TFPI1	tissue factor pathway inhibitor	protein-coding
1.30768-10	chr4	16574801	16575300	+	0	NA	intron (NM_001130834, intron 5 of 8)	Charlie10|DNA|hAT-Charlie	325382	NM_001130834	9079	Hs.714330	NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
1.51195-27	chr4	174131484	174131983	+	0	NA	intron (NM_017423, intron 1 of 11)	AluJb|SINE|Alu	-40930	NR_134242	101930370	Hs.563191	NR_134241	ENSG00000245213	LOC101930370	-	uncharacterized LOC101930370	ncRNA
2.17527-3	chr9	14313901	14314400	+	0	NA	promoter-TSS (NM_005596)	promoter-TSS (NM_005596)	-105	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
8.72895-11	chr18	9073555	9074054	+	0	NA	Intergenic	Intergenic	-28824	NM_021074	4729	Hs.464572	NM_021074	ENSG00000178127	NDUFV2	CI-24k	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
0.877779-6	chr5	4512063	4512562	+	0	NA	Intergenic	Intergenic	-261282	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
4.37707-13	chr8	143405532	143406031	+	0	NA	intron (NM_001291931, intron 4 of 10)	intron (NM_001291931, intron 4 of 10)	78829	NM_001291931	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
3.15155-8	chr11	78065662	78066161	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	-12985	NM_012296	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
4.01209-16	chr2	28659433	28659932	+	0	NA	Intergenic	Intergenic	-42143	NR_103831	403150	Hs.562970	NR_103831	ENSG00000229951	FLJ31356	-	uncharacterized protein FLJ31356	ncRNA
23.7366-3	chr3	139695539	139696038	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	41761	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
1.35489-30	chr18	48327277	48327776	+	0	NA	intron (NM_001127174, intron 4 of 5)	intron (NM_001127174, intron 4 of 5)	18908	NM_001127176	83876	Hs.30495	NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding
0.788339-26	chr21	33031723	33032222	+	0	NA	promoter-TSS (NM_000454)	promoter-TSS (NM_000454)	37	NM_000454	6647	Hs.443914	NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer	superoxide dismutase 1, soluble	protein-coding
2.18963-22	chr11	111198535	111199034	+	0	NA	Intergenic	Intergenic	-19698	NR_039712	100616330		NR_039712	ENSG00000264032	MIR4491	mir-4491	microRNA 4491	ncRNA
0.105502-5	chr6	62597356	62597855	+	0	NA	intron (NM_152688, intron 6 of 8)	intron (NM_152688, intron 6 of 8)	313597	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
0.168249-8	chr6	31865277	31865776	+	0	NA	promoter-TSS (NM_001282457).3	promoter-TSS (NM_001282457).3	-36	NM_001282457	717	Hs.408903	NM_000063	ENSG00000166278	C2	ARMD14|CO2	complement C2	protein-coding
10.9313	chr6	119221058	119221557	+	0	NA	intron (NM_014034, intron 1 of 3)	intron (NM_014034, intron 1 of 3)	6066	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
4.38899-4	chr6	15249022	15249521	+	0	NA	promoter-TSS (NR_120502)	promoter-TSS (NR_120502)	185	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
8.72895-9	chr6	10759468	10759967	+	0	NA	3' UTR (NM_001286489, exon 5 of 5)	3' UTR (NM_001286489, exon 5 of 5)	11725	NM_001286489	81853	Hs.95600	NM_030969	ENSG00000137210	TMEM14B	-	transmembrane protein 14B	protein-coding
0.0612309-29	chr3	160301193	160301692	+	0	NA	Intergenic	L1MA4|LINE|L1	-18066	NM_002268	3840	Hs.467866	NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
0.376307-23	chr1	8257806	8258305	+	0	NA	Intergenic	Intergenic	-10677	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
1.34304-3	chr11	65990080	65990579	+	0	NA	intron (NM_018026, intron 10 of 23)	intron (NM_018026, intron 10 of 23)	-34436	NM_001134775	64837	Hs.280792	NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
0.241089-37	chr3	23245088	23245587	+	0	NA	promoter-TSS (NR_136176)	promoter-TSS (NR_136176)	553	NM_152653	7325	Hs.475688	NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
23.6754-2	chr1	32180456	32180955	+	0	NA	Intergenic	Intergenic	-10937	NM_001856	1307	Hs.368921	NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
36.7366	chr9	111144507	111145006	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	473519	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
2.30623-7	chr19	57791031	57791530	+	0	NA	promoter-TSS (NM_006635)	promoter-TSS (NM_006635)	-55	NM_001330622	10794	Hs.99971	NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
3.65523-10	chr15	79603033	79603532	+	0	NA	promoter-TSS (NR_125394)	promoter-TSS (NR_125394)	-122	NM_001330376	23423	Hs.71608	NM_007364	ENSG00000166557	TMED3	C15orf22|P24B|p24g4|p26	transmembrane p24 trafficking protein 3	protein-coding
19.914-4	chr11	63913629	63914128	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	19707	NM_014067	28992	Hs.602898	NM_014067	ENSG00000133315	MACROD1	LRP16	MACRO domain containing 1	protein-coding
7.25842	chr6	39537283	39537782	+	0	NA	intron (NM_145027, intron 10 of 22)	intron (NM_145027, intron 10 of 22)	-138382	NM_001289024	221458	Hs.588202	NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
0.510982-6	chr7	102789686	102790185	+	0	NA	promoter-TSS (NM_001122838)	promoter-TSS (NM_001122838)	-366	NM_001122838	222236	Hs.324271	NM_198990	ENSG00000161048	NAPEPLD	FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
1.29596-3	chr21	46131377	46131876	+	0	NA	promoter-TSS (NM_144991)	promoter-TSS (NM_144991)	-131	NM_144991	54084	Hs.660703	NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
1.70053-15	chr22	41953258	41953757	+	0	NA	intron (NR_134631, intron 1 of 1)	intron (NR_134631, intron 1 of 1)	3380	NR_134631	105373044	Hs.551351	NR_134631		LOC105373044	-	uncharacterized LOC105373044	ncRNA
14.7496-2	chr20	31427422	31427921	+	0	NA	intron (NM_012325, intron 5 of 6)	intron (NM_012325, intron 5 of 6)	19972	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
1.29011-15	chr17	79448262	79448761	+	0	NA	Intergenic	CpG	-30297	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
5.11449	chr13	77365420	77365919	+	0	NA	Intergenic	Intergenic	94871	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
3.36299-10	chr8	103135912	103136411	+	0	NA	intron (NM_001040624, intron 1 of 7)	CpG	401	NM_001040624	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
3.47754-5	chrX	93815781	93816280	+	0	NA	Intergenic	L1PBa|LINE|L1	502195	NR_031667	100313772		NR_031667	ENSG00000221187	MIR548M	MIRN548M	microRNA 548m	ncRNA
0.428718-22	chr6	146225874	146226373	+	0	NA	intron (NM_173082, intron 25 of 29)	intron (NM_173082, intron 25 of 29)	59110	NM_173082	257218	Hs.723297	NM_173082	ENSG00000146414	SHPRH	bA545I5.2	SNF2 histone linker PHD RING helicase	protein-coding
9.1364-31	chr7_gl000195_random	129103	129944	+	0	NA	Intergenic	Intergenic	-42788	NM_001347682	389831	Hs.743984	NM_001242480	ENSG00000276256	LOC389831	-	uncharacterized LOC389831	protein-coding
0.979971-21	chr9	2843336	2843835	+	0	NA	intron (NM_014878, intron 1 of 17)	AluY|SINE|Alu	545	NM_014878	9933	Hs.493309	NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
4.57175-7	chr7	75856226	75856725	+	0	NA	intron (NM_001291831, intron 1 of 16)	intron (NM_001291831, intron 1 of 16)	25264	NM_001110199	222183	Hs.511025	NM_001039212	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
0.614803-4	chr4	78953517	78954016	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-24958	NM_025074	80144	Hs.369448	NM_020875	ENSG00000138759	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
0.268721-64	chr11	118958217	118958716	+	0	NA	promoter-TSS (NM_001024382)	promoter-TSS (NM_001024382)	-231	NM_001024382	3145	Hs.82609	NM_000190	ENSG00000256269	HMBS	PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
0.540393-16	chr3	14298038	14298537	+	0	NA	Intergenic	LTR16A|LTR|ERVL	78059	NM_014463	27258	Hs.111632	NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
0.15923-17	chr6	134294194	134294693	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	20142	NM_004865	9519	Hs.486507	NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
0.376307-12	chr5	21554759	21555258	+	0	NA	intron (NR_027026, intron 4 of 4)	LTR76|LTR|ERV1	95419	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo
1.29011-11	chr12	122750863	122751362	+	0	NA	promoter-TSS (NM_022916)	promoter-TSS (NM_022916)	-44	NM_022916	65082	Hs.592009	NM_022916	ENSG00000139719	VPS33A	-	VPS33A, CORVET/HOPS core subunit	protein-coding
26.9465	chr1	227127770	227128269	+	0	NA	promoter-TSS (NM_020247)	promoter-TSS (NM_020247)	81	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
14.4612	chr18	70533981	70534480	+	0	NA	intron (NM_138966, intron 1 of 10)	CpG	580	NM_138966	81832	Hs.465407	NM_138966	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin and tolloid like 1	protein-coding
23.9686-4	chr18	76760874	76761373	+	0	NA	Intergenic	Intergenic	20848	NM_171999	27164	Hs.700557	NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
0.0261362-12	chr21	29194730	29195229	+	0	NA	Intergenic	L1PA16|LINE|L1	100281	NR_024357	54088	Hs.570434	NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113	long intergenic non-protein coding RNA 113	ncRNA
0.109954-6	chr3	141378826	141379325	+	0	NA	Intergenic	CpG	-2966	NR_136190	646730	Hs.570677	NR_136190		LOC646730	-	uncharacterized LOC646730	ncRNA
0.109954-7	chr2	115920491	115920990	+	0	NA	intron (NM_001321906, intron 2 of 26)	CpG	1056	NM_001321909	57628	Hs.580539	NM_020868	ENSG00000175497	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl peptidase like 10	protein-coding
0.0744648-35	chr12	6297035	6297534	+	0	NA	Intergenic	Intergenic	-11589	NM_001330312	928	Hs.114286	NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
0.560111-3	chr8	17519008	17519507	+	0	NA	intron (NM_001001924, intron 8 of 14)	intron (NM_001001924, intron 8 of 14)	14753	NM_001330470	57509	Hs.7946	NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
5.04456-2	chr8	81639339	81639838	+	0	NA	intron (NM_001033723, intron 2 of 8)	intron (NM_001033723, intron 2 of 8)	147428	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
0.209071-3	chr2	23609462	23609961	+	0	NA	intron (NM_052920, intron 1 of 13)	CpG	1413	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
1.16339-13	chr11	62150093	62150592	+	0	NA	intron (NM_025080, intron 4 of 6)	LTR5_Hs|LTR|ERVK	-36165	NM_003357	7356	Hs.523732	NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
5.49751-6	chr9	139983498	139983997	+	0	NA	intron (NR_045721, intron 4 of 13)	L2b|LINE|L2	2368	NR_045721	11253	Hs.279881	NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
0.0261362-35	chr6	1686260	1686759	+	0	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	75828	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
3.36299-2	chr6	1497445	1498390	+	0	NA	Intergenic	Intergenic	-107271	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
0.428718-33	chr19	48833268	48833767	+	0	NA	intron (NM_001313905, intron 4 of 4)	CpG	4261	NM_001313905	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
16.9037-3	chr9	137682726	137683225	+	0	NA	intron (NM_001278074, intron 32 of 65)	intron (NM_001278074, intron 32 of 65)	58240	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
0.409586-36	chr22	20849989	20850488	+	0	NA	promoter-TSS (NR_033825)	promoter-TSS (NR_033825)	-68	NM_032775	84861	Hs.517419	NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
2.07608-15	chr9	19485089	19485588	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	76413	NM_001010887	340485	Hs.41379	NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
1.18045-21	chr17	60342305	60342804	+	0	NA	non-coding (NR_027486, exon 14 of 14)	non-coding (NR_027486, exon 14 of 14)	10462	NR_027486	440452	Hs.448884	NR_027486	ENSG00000188755	TBC1D3P2	-	TBC1 domain family member 3 pseudogene 2	pseudo
1.11821-10	chr4	58370237	58370736	+	0	NA	Intergenic	Intergenic	78448	NR_125907	101928851	Hs.555072	NR_125907	ENSG00000248505	LOC101928851	-	uncharacterized LOC101928851	ncRNA
7.07744-3	chr3	168600760	168601259	+	0	NA	Intergenic	Intergenic	-18724	NR_109989	100507661	Hs.65918	NR_109989	ENSG00000242268	LINC02082	-	long intergenic non-protein coding RNA 2082	ncRNA
6.7162-8	chr14	65569162	65569661	+	0	NA	promoter-TSS (NM_002382)	promoter-TSS (NM_002382)	2	NR_073137	4149	Hs.285354	NM_002382	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
0.118872-33	chr12	66042812	66043311	+	0	NA	Intergenic	Intergenic	-6909	NR_120431	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA
7.54487-3	chr4	151601668	151602167	+	0	NA	intron (NM_006726, intron 37 of 57)	intron (NM_006726, intron 37 of 57)	98840	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
1.15205-5	chr1	120925248	120926222	+	0	NA	TTS (NM_001004340)	TTS (NM_001004340)	10209	NM_001017986	2210	Hs.534956	NM_001004340	ENSG00000198019	FCGR1B	CD64b|IGFRB	Fc fragment of IgG receptor Ib	protein-coding
7.39929-10	chrX	134611429	134611928	+	0	NA	Intergenic	L2|LINE|L2	-42877	NM_182540	203522	Hs.496829	NM_182540	ENSG00000165359	INTS6L	DDX26B	integrator complex subunit 6 like	protein-coding
0.0392635-26	chr7	97870579	97871078	+	0	NA	intron (NM_015395, intron 6 of 25)	intron (NM_015395, intron 6 of 25)	10735	NM_015395	25851	Hs.592281	NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
2.07608-5	chr2	152266890	152267389	+	0	NA	intron (NM_001177665, intron 1 of 33)	CpG	535	NM_001177665	55183	Hs.536537	NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
6.47817-12	chr13	43877286	43877785	+	0	NA	intron (NM_017993, intron 11 of 16)	intron (NM_017993, intron 11 of 16)	-145453	NR_120399	100874130	Hs.738887	NR_120399		ENOX1-AS2	-	ENOX1 antisense RNA 2	ncRNA
1.12946-7	chr6	151711457	151711956	+	0	NA	intron (NM_020861, intron 1 of 2)	CpG	1129	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
1.79142-9	chr17	21156549	21157048	+	0	NA	promoter-TSS (NM_152914)	promoter-TSS (NM_152914)	-220	NM_152914	256302	Hs.654713	NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
9.66576-19	chr2	8199266	8199765	+	0	NA	intron (NR_034135, intron 8 of 8)	intron (NR_034135, intron 8 of 8)	-82570	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
0.809219-7	chr6	35695412	35695911	+	0	NA	intron (NR_027117, intron 9 of 9)	intron (NR_027117, intron 9 of 9)	699	NM_001145775	2289	Hs.407190	NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FK506 binding protein 5	protein-coding
1.06793-7	chr1	191577921	191578420	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-549422	NM_130782	64407	Hs.440890	NM_130782	ENSG00000150681	RGS18	RGS13	regulator of G-protein signaling 18	protein-coding
1.26679-10	chr19	3557415	3558393	+	0	NA	promoter-TSS (NM_001287529)	promoter-TSS (NM_001287529)	-322	NM_001287529	126321	Hs.656901	NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
4.78862-8	chr5	114598290	114598789	+	0	NA	promoter-TSS (NM_005023)	promoter-TSS (NM_005023)	30	NM_005023	5229	Hs.254006	NM_005023	ENSG00000164219	PGGT1B	BGGI|GGTI	protein geranylgeranyltransferase type I subunit beta	protein-coding
0.0877392-42	chr3	114038216	114038715	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-3049	NR_030293	693153		NR_030293	ENSG00000259976	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
11.296-3	chr2	66736557	66737056	+	0	NA	intron (NM_002398, intron 7 of 12)	intron (NM_002398, intron 7 of 12)	-64356	NR_110156	100507073	Hs.667940	NR_110156	ENSG00000232046	LINC01798	-	long intergenic non-protein coding RNA 1798	ncRNA
0.0305075-53	chr12	120763185	120763684	+	0	NA	intron (NM_000928, intron 2 of 3)	intron (NM_000928, intron 2 of 3)	2158	NM_000928	5319	Hs.992	NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
0.0877392-22	chr9	136815213	136815712	+	0	NA	intron (NM_001134398, intron 1 of 29)	intron (NM_001134398, intron 1 of 29)	41984	NM_001134398	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
0.218195-8	chr6	124397980	124398479	+	0	NA	intron (NM_153355, intron 1 of 5)	Tigger15a|DNA|TcMar-Tigger	-205922	NM_001300740	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
2.71646-3	chr7	22765930	22766429	+	0	NA	promoter-TSS (NM_001318095)	promoter-TSS (NM_001318095)	-582	NM_000600	3569	Hs.654458	NM_000600	ENSG00000136244	IL6	BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6	interleukin 6	protein-coding
28.041-2	chr7	93704650	93705149	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-71205	NM_001317739	10282	Hs.489132	NM_005868	ENSG00000105829	BET1	HBET1	Bet1 golgi vesicular membrane trafficking protein	protein-coding
3.66532-3	chr11	22152136	22152635	+	0	NA	Intergenic	L1PA15|LINE|L1	-62337	NM_001142649	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
2.82329	chr4	38181266	38181765	+	0	NA	Intergenic	Intergenic	59940	NM_001253915	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
4.25969-7	chr19	42940109	42940608	+	0	NA	intron (NM_198477, intron 1 of 3)	L3b|LINE|CR1	6842	NM_198477	284340	Hs.445586	NM_198477	ENSG00000189377	CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	C-X-C motif chemokine ligand 17	protein-coding
0.132283-39	chr20	34330163	34330662	+	0	NA	promoter-TSS (NM_001242599)	promoter-TSS (NM_001242599)	-154	NM_184234	9584	Hs.282901	NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
13.2698-2	chr11	20784833	20785332	+	0	NA	intron (NM_201551, intron 2 of 18)	MIRb|SINE|MIR	93985	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
2.78189-17	chr5	131629701	131630200	+	0	NA	promoter-TSS (NM_003059)	promoter-TSS (NM_003059)	-195	NM_003059	6583	Hs.310591	NM_003059	ENSG00000197208	SLC22A4	DFNB60|OCTN1	solute carrier family 22 member 4	protein-coding
0.00434512-30	chr11	55124982	55125481	+	0	NA	Intergenic	L1PREC2|LINE|L1	-10129	NM_001005275	81328	Hs.554529	NM_001005275	ENSG00000181958	OR4A15	OR11-118	olfactory receptor family 4 subfamily A member 15	protein-coding
0.371573-12	chrX	24043004	24043503	+	0	NA	intron (NM_030624, intron 1 of 3)	CpG-27799	2050	NM_030624	80311	Hs.495854	NM_030624	ENSG00000174010	KLHL15	HEL-S-305	kelch like family member 15	protein-coding
0.241089-34	chr7	5469484	5469983	+	0	NA	Intergenic	Intergenic	-6556	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
0.0744648-43	chr9	134287558	134288057	+	0	NA	Intergenic	L1ME3A|LINE|L1	-17670	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
0.150229-13	chr6	11144527	11145026	+	0	NA	Intergenic	Intergenic	-32705	NM_207582	405754	Hs.631996	NM_207582	ENSG00000244476	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD member 1	protein-coding
0.584886	chr1	157326951	157327450	+	0	NA	Intergenic	PABL_A-int|LTR|ERV1	195110	NM_031281	83416	Hs.415950	NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
0.245682-3	chr7	43966050	43966549	+	0	NA	promoter-TSS (NM_001077664)	promoter-TSS (NM_001077664)	264	NM_015983	51619	Hs.19196	NM_015983	ENSG00000078967	UBE2D4	HBUCE1	ubiquitin conjugating enzyme E2 D4 (putative)	protein-coding
0.91515-8	chr11	88796679	88797178	+	0	NA	promoter-TSS (NM_000842)	promoter-TSS (NM_000842)	-82	NM_000842	2915	Hs.147361	NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
18.2681-6	chr19	40925177	40925676	+	0	NA	Intergenic	Intergenic	-6155	NM_181882	57716	Hs.205457	NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
4.7237-2	chr16	81527196	81527695	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-1509	NM_030629	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
17.2125-3	chr9	129845115	129845614	+	0	NA	intron (NM_001190728, intron 7 of 16)	intron (NM_001190728, intron 7 of 16)	39680	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
24.9757	chr2	173707205	173707704	+	0	NA	intron (NM_001100397, intron 1 of 27)	MLT1G1|LTR|ERVL-MaLR	-17312	NM_001282899	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
3.19664-3	chr4	71553839	71554338	+	0	NA	promoter-TSS (NM_020368)	promoter-TSS (NM_020368)	-108	NM_020368	57050	Hs.322901	NM_020368	ENSG00000132467	UTP3	CRL1|CRLZ1|SAS10	UTP3, small subunit processome component homolog (S. cerevisiae)	protein-coding
6.42065	chr12	67909697	67910196	+	0	NA	Intergenic	Intergenic	-3916	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
0.25028-40	chr3	187463279	187463778	+	0	NA	promoter-TSS (NM_001706)	promoter-TSS (NM_001706)	-15	NM_001706	604	Hs.478588	NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	B-cell CLL/lymphoma 6	protein-coding
0.0921731-23	chr7	157225197	157225696	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-33479	NR_110157	101927914	Hs.623826	NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
1.33122-9	chr15	29431973	29432472	+	0	NA	intron (NM_015307, intron 5 of 10)	intron (NM_015307, intron 5 of 10)	129798	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
51.296	chr6	146368433	146368932	+	0	NA	intron (NM_001278067, intron 1 of 7)	UCON28a|Unknown|Unknown	18348	NM_001278066	2911	Hs.32945	NM_000838	ENSG00000152822	GRM1	GPRC1A|MGLU1|MGLUR1|PPP1R85|SCAR13	glutamate metabotropic receptor 1	protein-coding
2.03426-11	chr14	77964883	77965382	+	0	NA	promoter-TSS (NM_199296)	promoter-TSS (NM_199296)	78	NM_199296	145501	Hs.29742	NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2	protein-coding
0.467237-10	chr17	49338410	49338909	+	0	NA	intron (NM_016001, intron 1 of 13)	intron (NM_016001, intron 1 of 13)	762	NM_016001	51096	Hs.709327	NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18, small subunit processome component	protein-coding
0.716041-5	chr7	52655201	52655700	+	0	NA	Intergenic	Intergenic	-447899	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding
2.9243-3	chr15	66790211	66790710	+	0	NA	promoter-TSS (NM_001329615)	promoter-TSS (NM_001329615)	-307	NR_138061	10302	Hs.30174	NM_006049	ENSG00000174446	SNAPC5	SNAP19	small nuclear RNA activating complex polypeptide 5	protein-coding
0.893756	chr15	83309874	83310373	+	0	NA	intron (NM_030594, intron 1 of 11)	intron (NM_030594, intron 1 of 11)	6233	NM_001288819	64506	Hs.459132	NM_030594	ENSG00000214575	CPEB1	CPE-BP1|CPEB|CPEB-1|h-CPEB|hCPEB-1	cytoplasmic polyadenylation element binding protein 1	protein-coding
38.2974	chr18	25625280	25625779	+	0	NA	intron (NM_001792, intron 2 of 15)	L2c|LINE|L2	-8980	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
0.00434512-33	chr19	38714624	38715123	+	0	NA	promoter-TSS (NM_001135155)	promoter-TSS (NM_001135155)	17	NM_001135155	8193	Hs.631576	NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	double PHD fingers 1	protein-coding
3.19664-7	chr17	35715353	35715852	+	0	NA	intron (NM_198839, intron 4 of 59)	intron (NM_198839, intron 4 of 59)	457	NM_198836	31	Hs.160556	NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACC|ACC1|ACCA	acetyl-CoA carboxylase alpha	protein-coding
13.0103-2	chr7	23719421	23720356	+	0	NA	exon (NM_001127364, exon 1 of 6)	exon (NM_001127364, exon 1 of 6)	155	NM_001300932	340277	Hs.592178	NM_199136	ENSG00000188732	FAM221A	C7orf46	family with sequence similarity 221 member A	protein-coding
4.68521-14	chr9	12813941	12814807	+	0	NA	promoter-TSS (NR_125775)	promoter-TSS (NR_125775)	14	NR_125775	101929467	Hs.586443	NR_125775	ENSG00000235448	LURAP1L-AS1	-	LURAP1L antisense RNA 1	ncRNA
0.952845-11	chr6	3438419	3438918	+	0	NA	intron (NM_021945, intron 1 of 10)	intron (NM_021945, intron 1 of 10)	6579	NM_021945	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
0.0130484-44	chr7	102252424	102252923	+	0	NA	intron (NM_001079877, intron 1 of 19)	L2b|LINE|L2	4530	NM_001277335	100271927	Hs.530089	NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
8.12479-9	chr16	82147914	82148413	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	55666	NM_005792	10200	Hs.344400	NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
0.619809	chr21	35747760	35748259	+	0	NA	intron (NM_058182, intron 1 of 3)	CpG	230	NM_001313692	102723553	Hs.656195	NM_001313692	ENSG00000273590	SMIM11B	-	small integral membrane protein 11B	protein-coding
11.2668-4	chr15	53951212	53951711	+	0	NA	intron (NR_102334, intron 14 of 19)	intron (NR_102334, intron 14 of 19)	100398	NM_182758	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
7.21246-8	chr2	2923279	2923778	+	0	NA	intron (NR_110228, intron 5 of 6)	intron (NR_110228, intron 5 of 6)	206270	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
0.824945-4	chr8	142047691	142048190	+	0	NA	Intergenic	Intergenic	-36528	NM_001199649	5747	Hs.395482	NM_005607	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
0.79355-13	chr18	65819942	65820441	+	0	NA	Intergenic	LTR1|LTR|ERV1	562162	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
0.132283-34	chr11	120383538	120384037	+	0	NA	intron (NM_014619, intron 1 of 20)	intron (NM_014619, intron 1 of 20)	1332	NM_014619	2900	Hs.538738	NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
0.0612309-21	chr14	93159007	93159506	+	0	NA	Intergenic	Intergenic	55791	NM_001008530	5641	Hs.18069	NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
1.81115-15	chr6	4806132	4806631	+	0	NA	intron (NM_004824, intron 1 of 6)	intron (NM_004824, intron 1 of 6)	29701	NM_004824	9425	Hs.269092	NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y-like	protein-coding
12.4489-3	chr15	95869875	95870374	+	0	NA	non-coding (NR_034095, exon 1 of 4)	non-coding (NR_034095, exon 1 of 4)	205	NR_034095	400456	Hs.536404	NR_034095	ENSG00000248441	LINC01197	-	long intergenic non-protein coding RNA 1197	ncRNA
0.181814-34	chr1	16693836	16694335	+	0	NA	intron (NR_073500, intron 1 of 1)	CpG	560	NR_073501	26099	Hs.252967	NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
2.0412-3	chr17	78010169	78010668	+	0	NA	promoter-TSS (NM_019020)	promoter-TSS (NM_019020)	-13	NM_001243342	55036	Hs.202542	NM_017950	ENSG00000141519	CCDC40	CILD15|FAP172	coiled-coil domain containing 40	protein-coding
0.301184-2	chr11	64834160	64834659	+	0	NA	Intergenic	Intergenic	-8400	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase like 1	protein-coding
0.452752-15	chr15	74257261	74257760	+	0	NA	Intergenic	Intergenic	27179	NM_001256673	9399	Hs.194816	NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
13.4199-3	chr17	55662971	55663470	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	22553	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
1.12383-11	chr17	75099656	75100155	+	0	NA	intron (NM_001204408, intron 3 of 19)	intron (NM_001204408, intron 3 of 19)	14406	NR_106997	102466864		NR_106997	ENSG00000234912	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
3.9794-16	chr3	160131296	160131795	+	0	NA	intron (NM_001002800, intron 8 of 23)	intron (NM_001002800, intron 8 of 23)	9012	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
3.94695-8	chr6	24721475	24721974	+	0	NA	Intergenic	CpG	-2321	NM_030939	81688	Hs.744857	NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
0.510982-9	chr6	3919477	3919976	+	0	NA	Intergenic	MER50|LTR|ERV1	70126	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
0.376307-11	chr14	32671621	32672120	+	0	NA	TTS (NR_125730).3	TTS (NR_125730).3	605	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
0.163737-10	chr8	70404509	70405008	+	0	NA	promoter-TSS (NM_001128205)	promoter-TSS (NM_001128205)	-270	NM_001128206	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding
8.29738-9	chr20	30182130	30182629	+	0	NA	Intergenic	Intergenic	-10707	NM_002165	3397	Hs.504609	NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1, HLH protein	protein-coding
3.68556-10	chr1	234782940	234783439	+	0	NA	intron (NR_125944, intron 1 of 3)	intron (NR_125944, intron 1 of 3)	1154	NR_125944	101927787	Hs.520658	NR_125944	ENSG00000228044	LOC101927787	-	uncharacterized LOC101927787	ncRNA
9.95679-13	chr11	128231220	128231719	+	0	NA	Intergenic	Intergenic	160736	NM_001162422	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
10.5601-3	chr2	37116856	37117355	+	0	NA	intron (NM_003162, intron 7 of 17)	intron (NM_003162, intron 7 of 17)	76510	NM_003162	6801	Hs.127486	NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
0.8302-3	chr12	6876794	6877293	+	0	NA	intron (NM_001330333, intron 1 of 4)	intron (NM_001330333, intron 1 of 4)	1560	NM_002824	5763	Hs.504613	NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding
5.54396-3	chr16	14727788	14728287	+	0	NA	intron (NM_001330500, intron 1 of 5)	intron (NM_001330500, intron 1 of 5)	1369	NM_016561	51283	Hs.435556	NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
0.154727-6	chr15	41061779	41062278	+	0	NA	promoter-TSS (NM_001130448)	promoter-TSS (NM_001130448)	-131	NM_001130448	643338	Hs.631715	NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
4.47332-8	chr3	151800870	151801369	+	0	NA	Intergenic	Intergenic	122099	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
7.21246-6	chr8	38343152	38343651	+	0	NA	Intergenic	Intergenic	-17049	NM_015850	2260	Hs.264887	NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
2.95849-11	chr12	92968066	92968565	+	0	NA	Intergenic	Intergenic	107860	NR_144532	100507616	Hs.339918	NR_144532		LOC100507616	-	uncharacterized LOC100507616	ncRNA
0.0436481-36	chr11	88798589	88799425	+	0	NA	Intergenic	Intergenic	-2161	NM_000842	2915	Hs.147361	NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
0.721166-3	chr2	24346027	24346526	+	0	NA	promoter-TSS (NM_001145710)	promoter-TSS (NM_001145710)	71	NM_199346	375189	Hs.442718	NM_199346	ENSG00000176732	PFN4	-	profilin family member 4	protein-coding
6.65546-4	chr3	194412627	194413126	+	0	NA	Intergenic	Intergenic	6254	NM_153690	131583	Hs.435080	NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
5.28708	chr6	129409007	129409506	+	0	NA	intron (NM_000426, intron 3 of 64)	SVA_C|Other|Other	204970	NM_001079823	3908	Hs.200841	NM_000426	ENSG00000196569	LAMA2	LAMM	laminin subunit alpha 2	protein-coding
0.893756-3	chr7	102105192	102105691	+	0	NA	promoter-TSS (NR_049813)	promoter-TSS (NR_049813)	111	NM_152892	222229	Hs.274135	NM_152892	ENSG00000161036	LRWD1	CENP-33|ORCA	leucine rich repeats and WD repeat domain containing 1	protein-coding
8.56985-4	chr4	44680507	44681006	+	0	NA	exon (NM_021927, exon 1 of 17)	exon (NM_021927, exon 1 of 17)	323	NM_021927	60558	Hs.546419	NM_021927	ENSG00000151806	GUF1	EF-4|EF4|EIEE40	GUF1 homolog, GTPase	protein-coding
0.273344-22	chr11	63854214	63854713	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	-16899	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
9.20819-15	chr9	71614419	71614918	+	0	NA	intron (NM_003558, intron 15 of 15)	intron (NM_003558, intron 15 of 15)	14371	NM_002732	5568	Hs.158029	NM_002732	ENSG00000165059	PRKACG	BDPLT19|KAPG|PKACg	protein kinase cAMP-activated catalytic subunit gamma	protein-coding
4.82804	chr1	156895941	156896440	+	0	NA	intron (NM_144702, intron 5 of 14)	MLT1F2|LTR|ERVL-MaLR	5766	NM_144702	149499	Hs.491734	NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
4.49772-9	chr7	6035100	6035599	+	0	NA	intron (NM_001322013, intron 6 of 13)	intron (NM_001322013, intron 6 of 13)	13310	NM_001322009	5395	Hs.632637	NM_000535	ENSG00000122512	PMS2	HNPCC4|MLH4|PMS2CL|PMSL2	PMS1 homolog 2, mismatch repair system component	protein-coding
0.0833099-37	chr20	49261957	49262456	+	0	NA	intron (NR_111906, intron 1 of 2)	intron (NR_111906, intron 1 of 2)	198	NR_111906	100506175	Hs.658270	NR_111906	ENSG00000234693	LOC100506175	-	uncharacterized LOC100506175	ncRNA
2.44125	chr7	98030031	98030530	+	0	NA	5' UTR (NM_018842, exon 1 of 14)	5' UTR (NM_018842, exon 1 of 14)	147	NM_018842	55971	Hs.656063	NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAI1 associated protein 2 like 1	protein-coding
1.38466-15	chr19	58193027	58193526	+	0	NA	promoter-TSS (NM_001270938)	promoter-TSS (NM_001270938)	-61	NM_138347	90233	Hs.109540	NM_138347	ENSG00000204519	ZNF551	-	zinc finger protein 551	protein-coding
1.2436-6	chr7	51383907	51384737	+	0	NA	exon (NM_001287436, exon 1 of 14)	exon (NM_001287436, exon 1 of 14)	236	NM_001346442	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
8.06875-15	chr2	178753268	178753767	+	0	NA	promoter-TSS (NM_001077196)	promoter-TSS (NM_001077196)	-51	NM_001077196	50940	Hs.570273	NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
37.6195	chr7	105476777	105477276	+	0	NA	intron (NM_020725, intron 2 of 11)	intron (NM_020725, intron 2 of 11)	40005	NM_152749	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
2.57275-2	chr6	157112388	157112887	+	0	NA	intron (NM_020732, intron 1 of 19)	intron (NM_020732, intron 1 of 19)	-11772	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
1.59267-13	chr3	46951026	46951525	+	0	NA	Intergenic	Intergenic	27536	NM_001184744	5745	Hs.1019	NM_000316	ENSG00000160801	PTH1R	PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
3.30683-5	chr18	57227795	57228294	+	0	NA	intron (NM_133459, intron 2 of 10)	HERVL18-int|LTR|ERVL	136600	NM_133459	147372	Hs.34333	NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding
1.20904-7	chr1	214155997	214156496	+	0	NA	intron (NR_037850, intron 1 of 5)	CpG	3250	NR_037850	100505832	Hs.664625	NR_037850		PROX1-AS1	-	PROX1 antisense RNA 1	ncRNA
0.670192	chr17	66507799	66508298	+	0	NA	promoter-TSS (NM_001276289)	promoter-TSS (NM_001276289)	127	NM_212471	5573	Hs.280342	NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
6.34512-2	chr2	20726290	20726789	+	0	NA	Intergenic	Intergenic	65769	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
25.5752-5	chr4	113985317	113985816	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	14781	NM_020977	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
20.9691	chr9	129890688	129891187	+	0	NA	intron (NM_001190728, intron 7 of 16)	intron (NM_001190728, intron 7 of 16)	-5893	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
18.4771-2	chr2	215496056	215496555	+	0	NA	Intergenic	Intergenic	121399	NR_047698	100885780	Hs.665982	NR_047698	ENSG00000224257	VWC2L-IT1	-	VWC2L intronic transcript 1	ncRNA
0.00434512-7	chr7	77326168	77326667	+	0	NA	promoter-TSS (NR_134251)	promoter-TSS (NR_134251)	245	NR_038361	100505854	Hs.72451	NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding)	ncRNA
11.261-2	chr5	38540296	38540795	+	0	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	16203	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
0.5061-27	chr9	139701974	139702473	+	0	NA	promoter-TSS (NM_001173989)	promoter-TSS (NM_001173989)	-151	NM_001173988	55684	Hs.370555	NM_017995	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	RAB, member RAS oncogene family-like 6	protein-coding
0.070049-17	chr2	61763900	61764399	+	0	NA	intron (NM_003400, intron 1 of 24)	intron (NM_003400, intron 1 of 24)	1269	NM_003400	7514	Hs.370770	NM_003400	ENSG00000082898	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
0.25028-18	chr21	38338528	38339027	+	0	NA	5' UTR (NM_001242784, exon 1 of 12)	5' UTR (NM_001242784, exon 1 of 12)	179	NM_001242784	3141	Hs.371350	NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
2.43364-4	chr6	7150903	7151402	+	0	NA	intron (NM_001003700, intron 1 of 11)	intron (NM_001003700, intron 1 of 11)	43066	NM_001003698	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
3.16953	chr1	49283077	49283576	+	0	NA	intron (NR_136623, intron 5 of 12)	intron (NR_136623, intron 5 of 12)	-40685	NM_024603	79656	Hs.475348	NM_024603	ENSG00000162373	BEND5	C1orf165	BEN domain containing 5	protein-coding
0.409586-23	chr5	175980814	175981313	+	0	NA	intron (NM_017675, intron 1 of 31)	intron (NM_017675, intron 1 of 31)	4720	NM_017675	54825	Hs.4205	NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLKC	cadherin related family member 2	protein-coding
3.41989-15	chr15	76633769	76634268	+	0	NA	intron (NM_145805, intron 5 of 5)	CpG-8122	4953	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
5.71865-2	chr13	103451332	103451831	+	0	NA	promoter-TSS (NM_024089)	promoter-TSS (NM_024089)	-177	NM_024089	79070	Hs.408629	NM_024089	ENSG00000134901	KDELC1	EP58|ERp58|KDEL1	KDEL motif containing 1	protein-coding
1.10698-3	chr1	202182473	202182972	+	0	NA	promoter-TSS (NM_001017404)	promoter-TSS (NM_001017404)	-561	NM_001017404	59352	Hs.497402	NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
0.856568-6	chr17	2689500	2689999	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	9534	NM_001330058	23108	Hs.499659	NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
1.14074-4	chr2	165773728	165774227	+	0	NA	intron (NM_001199148, intron 6 of 10)	intron (NM_001199148, intron 6 of 10)	38058	NM_173512	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
9.0309-3	chr7	24869367	24869866	+	0	NA	intron (NR_104112, intron 14 of 20)	MIR|SINE|MIR	62624	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
0.296531-34	chr12	131356152	131356651	+	0	NA	promoter-TSS (NM_001300796)	promoter-TSS (NM_001300796)	-138	NM_001300797	5901	Hs.10842	NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
14.4855	chr14	27905347	27905846	+	0	NA	Intergenic	Intergenic	-176198	NR_039992	100505967	Hs.668484	NR_039992	ENSG00000258548	LINC00645	-	long intergenic non-protein coding RNA 645	ncRNA
0.589858-28	chr3	159535995	159536494	+	0	NA	intron (NM_001197113, intron 5 of 10)	intron (NM_001197113, intron 5 of 10)	-21406	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
1.64309-13	chr14	76952473	76952972	+	0	NA	intron (NM_004452, intron 7 of 10)	intron (NM_004452, intron 7 of 10)	115032	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
1.12946-9	chr6	130210595	130211094	+	0	NA	Intergenic	Intergenic	-28428	NM_001010876	253582	Hs.448372	NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
2.23299-4	chr6	46458834	46459333	+	0	NA	promoter-TSS (NM_001251974)	promoter-TSS (NM_001251974)	-23	NM_001251974	10231	Hs.440168	NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
0.150229	chr17	27229532	27230031	+	0	NA	intron (NM_144683, intron 1 of 4)	CpG-10369	308	NM_144683	147015	Hs.631760	NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
0.070049-24	chr6	15386841	15387340	+	0	NA	intron (NM_004973, intron 2 of 17)	intron (NM_004973, intron 2 of 17)	138004	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
0.0833099-4	chr1	150540163	150540662	+	0	NA	intron (NR_104133, intron 2 of 3)	intron (NR_104133, intron 2 of 3)	6616	NR_104133	574406	Hs.516243	NM_001025493	ENSG00000203804	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
3.28827-13	chr2	20063167	20063860	+	0	NA	Intergenic	Intergenic	-5102	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
3.37242-18	chr11	44887350	44887849	+	0	NA	intron (NM_130783, intron 2 of 8)	intron (NM_130783, intron 2 of 8)	84160	NM_001318384	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
5.30178-7	chr5	1516218	1516717	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	-5496	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
1.0513-4	chr1	118472034	118472533	+	0	NA	promoter-TSS (NM_001135589)	promoter-TSS (NM_001135589)	19	NM_001135589	54834	Hs.310809	NM_017686	ENSG00000196505	GDAP2	MACROD3	ganglioside induced differentiation associated protein 2	protein-coding
2.39578-4	chr2	172379316	172379815	+	0	NA	intron (NM_001127383, intron 1 of 2)	CpG	699	NM_001127383	79901	Hs.221941	NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
0.141246-25	chr2	178107331	178107830	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	13158	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
0.33389-10	chr12	100536473	100536972	+	0	NA	promoter-TSS (NM_015054)	promoter-TSS (NM_015054)	-80	NM_015054	23074	Hs.572154	NM_015054	ENSG00000111647	UHRF1BP1L	SHIP164	UHRF1 binding protein 1 like	protein-coding
5.25784-6	chr2	27123564	27124063	+	0	NA	intron (NM_020134, intron 2 of 12)	intron (NM_020134, intron 2 of 12)	52521	NM_001253724	56896	Hs.299315	NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase like 5	protein-coding
20.8145-3	chr7	135458916	135459415	+	0	NA	Intergenic	Intergenic	-25571	NM_205855	389558	Hs.55200	NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
13.9147	chr3	188835234	188835733	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-54280	NM_198485	285386	Hs.729544	NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
2.75724-5	chrX	150561938	150562437	+	0	NA	Intergenic	Intergenic	-3470	NM_001017980	203547	Hs.58633	NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding
1.64944-12	chr2	66309650	66310149	+	0	NA	Intergenic	Intergenic	275561	NR_039938	100616464		NR_039938	ENSG00000264525	MIR4778	-	microRNA 4778	ncRNA
0.132283-15	chr5	10556320	10556819	+	0	NA	Intergenic	Intergenic	-7866	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
8.06875-17	chr2	188854853	188855352	+	0	NA	Intergenic	Intergenic	297316	NR_126396	104355152		NR_126396	ENSG00000231689	LINC01090	-	long intergenic non-protein coding RNA 1090	ncRNA
0.952845-22	chr7	135139261	135139760	+	0	NA	intron (NM_001008225, intron 1 of 10)	AluSx4|SINE|Alu	55365	NM_013316	4850	Hs.490224	NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
6.69586-6	chr3	55278885	55279384	+	0	NA	Intergenic	Intergenic	236292	NM_001256105	7474	Hs.643085	NM_003392	ENSG00000114251	WNT5A	hWNT5A	Wnt family member 5A	protein-coding
2.38824-5	chr15	74583631	74584130	+	0	NA	intron (NM_025055, intron 10 of 18)	intron (NM_025055, intron 10 of 18)	-27002	NM_001287181	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
23.2975	chr3	144870608	144871107	+	0	NA	Intergenic	Intergenic	1008425	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
5.85027-6	chr16	89768257	89768756	+	0	NA	promoter-TSS (NM_152339)	promoter-TSS (NM_152339)	-385	NM_152339	124044	Hs.374556	NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
8.99629-9	chr8	37548759	37549258	+	0	NA	Intergenic	L2c|LINE|L2	-4261	NM_025069	80139	Hs.288042	NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
5.83359-8	chr18	34981918	34982417	+	0	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	64300	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
41.4206	chr5	43580543	43581042	+	0	NA	intron (NR_073113, intron 2 of 2)	LTR5_Hs|LTR|ERVK	-21999	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
5.14279-4	chr9	117922771	117923270	+	0	NA	intron (NM_017418, intron 1 of 7)	intron (NM_017418, intron 1 of 7)	18923	NM_017418	50514	Hs.148841	NM_017418	ENSG00000173077	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
19.2812-4	chr1	6119965	6120464	+	0	NA	intron (NM_001199862, intron 2 of 15)	intron (NM_001199862, intron 2 of 15)	14040	NM_001199863	8514	Hs.440497	NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
7.32828-5	chr12	117313747	117314246	+	0	NA	intron (NR_073189, intron 3 of 4)	intron (NR_073189, intron 3 of 4)	5236	NM_003806	8739	Hs.87247	NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
0.268721-53	chr19	45972292	45972791	+	0	NA	intron (NM_006732, intron 1 of 3)	CpG	1288	NM_006732	2354	Hs.590958	NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
7.87812-6	chr2	198337277	198337776	+	0	NA	intron (NM_001320820, intron 4 of 4)	AluSx1|SINE|Alu	14101	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
0.0392635-12	chr1	177150797	177151296	+	0	NA	intron (NM_021165, intron 1 of 7)	CpG	10522	NM_021165	57795	Hs.495918	NM_021165	ENSG00000198797	BRINP2	DBCCR1L2|FAM5B	BMP/retinoic acid inducible neural specific 2	protein-coding
0.851282-2	chr1	45671691	45672190	+	0	NA	exon (NM_020883, exon 1 of 14)	exon (NM_020883, exon 1 of 14)	310	NM_020883	57643	Hs.656613	NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
2.652-8	chr3	160453534	160454033	+	0	NA	Intergenic	Intergenic	-20209	NM_139245	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
1.74574-12	chr4	79970998	79971497	+	0	NA	intron (NR_038342, intron 2 of 5)	intron (NR_038342, intron 2 of 5)	78345	NR_038342	100505875	Hs.480055	NR_038342		LINC01088	-	long intergenic non-protein coding RNA 1088	ncRNA
0.127808-9	chr7	29190555	29191054	+	0	NA	intron (NM_001293069, intron 2 of 13)	intron (NM_001293069, intron 2 of 13)	4641	NM_001293069	1124	Hs.654611	NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
16.3827-8	chr17	25823369	25823868	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	24582	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
1.29011-13	chr8	17014029	17014528	+	0	NA	exon (NM_016353, exon 1 of 13)	exon (NM_016353, exon 1 of 13)	442	NM_016353	51201	Hs.728241	NM_016353	ENSG00000104219	ZDHHC2	DHHC2|ZNF372	zinc finger DHHC-type containing 2	protein-coding
10.7058	chr22	39631227	39631810	+	0	NA	intron (NM_002608, intron 2 of 6)	intron (NM_002608, intron 2 of 6)	5396	NM_033016	5155	Hs.1976	NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
0.268721-3	chr2	225637799	225638298	+	0	NA	exon (NM_001290263, exon 53 of 56)	exon (NM_001290263, exon 53 of 56)	173734	NM_001290263	55619	Hs.46578	NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
2.33587-4	chr12	132413556	132414055	+	0	NA	promoter-TSS (NM_025215)	promoter-TSS (NM_025215)	7	NM_001002019	80324	Hs.592004	NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridylate synthase 1	protein-coding
0.145735-22	chr5	52778580	52779079	+	0	NA	exon (NM_006350, exon 2 of 6)	exon (NM_006350, exon 2 of 6)	2565	NM_013409	10468	Hs.9914	NM_006350	ENSG00000134363	FST	FS	follistatin	protein-coding
6.09065	chr1	21594756	21595255	+	0	NA	intron (NM_001113349, intron 3 of 17)	intron (NM_001113349, intron 3 of 17)	11178	NM_001113347	1889	Hs.195080	NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
10.2411-6	chr14	100680230	100681103	+	0	NA	Intergenic	CpG	-24436	NM_003403	7528	Hs.388927	NM_003403	ENSG00000100811	YY1	DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
6.73664-14	chr15	85680647	85681146	+	0	NA	intron (NM_002605, intron 21 of 21)	intron (NM_002605, intron 21 of 21)	67622	NR_049748	642423	Hs.681665	NR_049748		LOC642423	-	golgin A2 pseudogene	pseudo
1.98596-2	chr1	28261643	28262142	+	0	NA	intron (NM_001009568, intron 1 of 6)	intron (NM_001009568, intron 1 of 6)	426	NM_001009568	27293	Hs.123659	NM_014474	ENSG00000130768	SMPDL3B	ASML3B	sphingomyelin phosphodiesterase acid like 3B	protein-coding
1.55523-6	chr15	85114089	85114588	+	0	NA	promoter-TSS (NR_038273)	promoter-TSS (NR_038273)	-27	NR_038273	100506874	Hs.150824	NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
3.12471-6	chrX	112302859	112303358	+	0	NA	intron (NR_110399, intron 1 of 3)	MLT1F1|LTR|ERVL-MaLR	17153	NR_110399	101928437	Hs.640112	NR_110399		LOC101928437	-	uncharacterized LOC101928437	ncRNA
0.00434512-4	chr19	11039121	11039620	+	0	NA	promoter-TSS (NM_138358)	promoter-TSS (NM_138358)	-27	NM_001321440	78992	Hs.164026	NM_024029	ENSG00000130733	YIPF2	FinGER2	Yip1 domain family member 2	protein-coding
1.22053-12	chr1	11397423	11397922	+	0	NA	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	64417	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
2.66001-3	chr11	66650527	66651026	+	0	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	24564	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
12.7819-2	chr9	33515311	33515810	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4396	NR_003667	441394	Hs.521441	NR_003667		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 1	pseudo
0.462403-5	chr2	169290565	169291064	+	0	NA	Intergenic	Intergenic	-21945	NM_001256126	253782	Hs.506829	NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
2.07608-9	chr14	45315291	45315790	+	0	NA	Intergenic	Intergenic	-50967	NM_001017923	122525	Hs.82098	NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
7.72113-6	chr21	39721218	39721717	+	0	NA	Intergenic	Intergenic	-3469	NR_110545	102724678	Hs.635675	NR_110545		LINC01423	-	long intergenic non-protein coding RNA 1423	ncRNA
3.41035-13	chr11	89210257	89210756	+	0	NA	intron (NM_001291929, intron 1 of 16)	MER1A|DNA|hAT-Charlie	13403	NM_001291929	50507	Hs.371036	NM_016931	ENSG00000086991	NOX4	KOX|KOX-1|RENOX	NADPH oxidase 4	protein-coding
20.0612	chr14	71175379	71175878	+	0	NA	intron (NR_125769, intron 3 of 3)	LTR9|LTR|ERV1	10213	NR_125769	103695436	Hs.572296	NR_125769	ENSG00000258689	LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
0.291884-18	chr4	113740827	113741326	+	0	NA	intron (NM_001127493, intron 1 of 46)	intron (NM_001127493, intron 1 of 46)	1837	NM_001127493	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
3.43902-12	chr17	76356731	76357230	+	0	NA	promoter-TSS (NR_110846)	promoter-TSS (NR_110846)	-103	NR_110846	101928674	Hs.637297	NR_110845	ENSG00000266970	LOC101928674	-	uncharacterized LOC101928674	ncRNA
0.79355-27	chr11	106889007	106889506	+	0	NA	promoter-TSS (NM_000855)	promoter-TSS (NM_000855)	-85	NM_000855	2977	Hs.24321	NM_000855	ENSG00000152402	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1 soluble subunit alpha 2	protein-coding
1.05684-14	chr10	3110552	3111051	+	0	NA	promoter-TSS (NM_001323072)	intron (NM_001323071, intron 1 of 22)	-18	NM_001242339	5214	Hs.26010	NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
0.127808-26	chr8	19265878	19266377	+	0	NA	exon (NM_001130518, exon 9 of 10)	exon (NM_001130518, exon 9 of 10)	94640	NM_001174159	63898	Hs.303208	NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
13.279-9	chr14	57287830	57288329	+	0	NA	intron (NR_029385, intron 1 of 3)	UCON31|Unknown|Unknown	8178	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
1.00727-21	chr1	47184651	47185150	+	0	NA	promoter-TSS (NM_014774)	promoter-TSS (NM_014774)	-164	NM_014774	9813	Hs.707688	NM_014774	ENSG00000159658	EFCAB14	KIAA0494	EF-hand calcium binding domain 14	protein-coding
2.63603-11	chr12	133191407	133191906	+	0	NA	Intergenic	Intergenic	-3710	NM_012226	22953	Hs.258580	NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
3.35358-7	chr1	29101595	29102094	+	0	NA	Intergenic	CpG	-36810	NM_000911	4985	Hs.372	NM_000911	ENSG00000116329	OPRD1	OPRD	opioid receptor delta 1	protein-coding
5.01689	chr3	48772369	48772868	+	0	NA	Intergenic	SVA_D|Other|Other	-17907	NM_001146179	51447	Hs.595983	NM_016291	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
0.550241-16	chr1	204628151	204628650	+	0	NA	intron (NM_201630, intron 1 of 1)	intron (NM_201630, intron 1 of 1)	26081	NM_006338	10446	Hs.26312	NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
12.2403-2	chr10	43133455	43133954	+	0	NA	intron (NM_006955, intron 1 of 4)	CpG	581	NR_130950	7582	Hs.435774	NM_006955	ENSG00000196693	ZNF33B	KOX2|KOX31|ZNF11B	zinc finger protein 33B	protein-coding
0.213631-27	chr18	40866052	40866551	+	0	NA	Intergenic	L1PA4|LINE|L1	-8686	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding
1.35489-9	chr6	56820504	56821003	+	0	NA	intron (NM_152731, intron 1 of 6)	intron (NM_152731, intron 1 of 6)	980	NM_152731	221336	Hs.582993	NM_152731	ENSG00000151917	BEND6	C6orf65	BEN domain containing 6	protein-coding
14.5346-2	chr2	238642453	238642952	+	0	NA	intron (NM_001137550, intron 9 of 23)	intron (NM_001137550, intron 9 of 23)	41895	NM_004735	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
0.731433-2	chr3	191848206	191848705	+	0	NA	Intergenic	L1MEf|LINE|L1	-107964	NR_046596	100873986	Hs.581652	NR_046596	ENSG00000231383	FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
5.0724-6	chr19	2550802	2551301	+	0	NA	intron (NM_052847, intron 3 of 4)	intron (NM_052847, intron 3 of 4)	74928	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
0.705811-2	chr12	110436686	110437185	+	0	NA	promoter-TSS (NM_033121)	promoter-TSS (NM_033121)	-300	NM_033121	88455	Hs.528703	NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
13.9903	chr2	99520461	99520960	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	31974	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
0.268721-7	chr6	27870585	27871084	+	0	NA	Intergenic	Intergenic	9340	NM_033057	81697	Hs.307111	NM_033057	ENSG00000168131	OR2B2	OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10	olfactory receptor family 2 subfamily B member 2	protein-coding
5.80044-5	chr6	145727881	145728380	+	0	NA	Intergenic	Intergenic	-327875	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
0.675262-3	chr17	60548247	60548746	+	0	NA	Intergenic	MIRb|SINE|MIR	-7633	NM_001330418	11011	Hs.445078	NM_006852	ENSG00000146872	TLK2	HsHPK|PKU-ALPHA	tousled like kinase 2	protein-coding
0.731433-5	chr21	16435970	16436469	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	907	NM_003489	8204	Hs.155017	NM_003489	ENSG00000180530	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
2.24754-9	chr19	36559187	36559686	+	0	NA	intron (NM_173636, intron 7 of 31)	SVA_C|Other|Other	13653	NM_173636	284403	Hs.116244	NM_173636	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
6.88246-3	chr6	110884876	110885375	+	0	NA	Intergenic	MIR|SINE|MIR	-87281	NM_033125	85413	Hs.520319	NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
0.141246-23	chr16	16951707	16952206	+	0	NA	Intergenic	Intergenic	-276405	NR_135179	102723692	Hs.737758	NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
2.79841	chr2	146053585	146054084	+	0	NA	Intergenic	Intergenic	628300	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
2.45652-6	chr1	13624450	13624949	+	0	NA	intron (NM_001099850, intron 1 of 2).2	SVA_D|Other|Other	-5226	NM_001039361	343071	Hs.684629	NM_001039361	ENSG00000187545	PRAMEF10	-	PRAME family member 10	protein-coding
0.0877392-9	chr1	153949585	153950084	+	0	NA	5' UTR (NM_006694, exon 1 of 5)	5' UTR (NM_006694, exon 1 of 5)	617	NM_006694	10899	Hs.6396	NM_006694	ENSG00000143543	JTB	HJTB|HSPC222|PAR|hJT	jumping translocation breakpoint	protein-coding
1.43876-6	chr3	9642258	9642757	+	0	NA	Intergenic	CpG	-47021	NM_198560	375323	Hs.56782	NM_198560	ENSG00000156959	LHFPL4	-	lipoma HMGIC fusion partner-like 4	protein-coding
2.47184-15	chr17	77030082	77030581	+	0	NA	promoter-TSS (NM_198593)	promoter-TSS (NM_198593)	-50	NM_198593	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
0.675262-25	chr15	42349135	42349634	+	0	NA	Intergenic	Intergenic	-6483	NM_001206670	123745	Hs.668060	NM_001080490	ENSG00000188089	PLA2G4E	-	phospholipase A2 group IVE	protein-coding
3.37242-15	chr15	74913334	74913833	+	0	NA	intron (NM_001130028, intron 3 of 12)	intron (NM_001130028, intron 3 of 12)	6248	NM_001130028	1198	Hs.511790	NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
0.990869-24	chr8	101913842	101914341	+	0	NA	Intergenic	Intergenic	48708	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
3.81952-9	chr4	134069025	134069524	+	0	NA	intron (NR_125885, intron 1 of 8)	CpG	997	NR_125885	101927359	Hs.649960	NR_125885	ENSG00000250241	LOC101927359	-	uncharacterized LOC101927359	ncRNA
18.2681-3	chr9	129820660	129821159	+	0	NA	intron (NM_001190728, intron 6 of 16)	intron (NM_001190728, intron 6 of 16)	64135	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
9.50782-4	chr17	70657523	70658022	+	0	NA	intron (NM_001159770, intron 7 of 9)	intron (NM_001159770, intron 7 of 9)	-21161	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
9.914-3	chr10	101853797	101854296	+	0	NA	Intergenic	SVA_F|Other|Other	-12404	NM_001308	1369	Hs.2246	NM_001308	ENSG00000120054	CPN1	CPN|SCPN	carboxypeptidase N subunit 1	protein-coding
1.59894-23	chr5	102455892	102456391	+	0	NA	promoter-TSS (NM_001317954)	promoter-TSS (NM_001317954)	189	NM_001276277	23262	Hs.212046	NM_015216	ENSG00000145725	PPIP5K2	CFAP160|HISPPD1|IP7K2|VIP2	diphosphoinositol pentakisphosphate kinase 2	protein-coding
4.68521-3	chr8	23103771	23104270	+	0	NA	promoter-TSS (NM_001317899)	promoter-TSS (NM_001317899)	-85	NM_001317899	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
6.16185-8	chr11	45546823	45547322	+	0	NA	Intergenic	Intergenic	140134	NM_003654	8534	Hs.104576	NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
2.00659-14	chr20	17550233	17550732	+	0	NA	promoter-TSS (NM_006870)	promoter-TSS (NM_006870)	-117	NM_006870	11034	Hs.304192	NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
7.85156-7	chr17	17643061	17643560	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	26306	NR_130894	100861516	Hs.624874	NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
0.268721-41	chr15	40373835	40374334	+	0	NA	Intergenic	Intergenic	24203	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
0.390538-25	chr4	73437637	73438136	+	0	NA	Intergenic	Intergenic	-3370	NM_014243	9508	Hs.590919	NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
2.07608-6	chr2	86263061	86263560	+	0	NA	intron (NM_015425, intron 27 of 33)	MIRc|SINE|MIR	-12319	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
4.36519-24	chr3	127012069	127012568	+	0	NA	Intergenic	SVA_B|Other|Other	97195	NR_110147	101927123	Hs.526761	NR_110147	ENSG00000244215	LINC02016	-	long intergenic non-protein coding RNA 2016	ncRNA
2.93282-13	chr11	35639172	35639671	+	0	NA	promoter-TSS (NM_014344)	promoter-TSS (NM_014344)	-314	NM_014344	24147	Hs.39384	NM_014344	ENSG00000179431	FJX1	-	four jointed box 1	protein-coding
2.38072-10	chr11	12267051	12267550	+	0	NA	intron (NR_144418, intron 20 of 25)	intron (NR_144418, intron 20 of 25)	-41147	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
11.1976	chr13	26802155	26802654	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-5896	NM_183045	6049	Hs.136885	NM_005977	ENSG00000127870	RNF6	-	ring finger protein 6	protein-coding
0.772745-9	chr6	7764005	7764504	+	0	NA	intron (NM_001718, intron 1 of 6)	intron (NM_001718, intron 1 of 6)	37922	NM_001718	654	Hs.285671	NM_001718	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
2.79014-21	chr1	200153266	200153765	+	0	NA	Intergenic	Intergenic	141562	NM_001276464	2494	Hs.33446	NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
1.26098-3	chr7	151574405	151574904	+	0	NA	promoter-TSS (NM_016203)	promoter-TSS (NM_016203)	-338	NM_016203	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
3.39135-12	chr17	34890495	34890994	+	0	NA	5' UTR (NM_178517, exon 1 of 3)	5' UTR (NM_178517, exon 1 of 3)	155	NM_178517	284098	Hs.378885	NM_178517	ENSG00000277161	PIGW	Gwt1|HPMRS5	phosphatidylinositol glycan anchor biosynthesis class W	protein-coding
30.6803	chr21	32870098	32870597	+	0	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	60943	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
0.33389-16	chr6	105720533	105721032	+	0	NA	Intergenic	Intergenic	-92924	NM_022361	64208	Hs.458336	NM_022361	ENSG00000132429	POPDC3	POP3|bA355M14.1	popeye domain containing 3	protein-coding
8.26814-14	chr19	10811878	10812377	+	0	NA	promoter-TSS (NM_031209)	promoter-TSS (NM_031209)	15	NM_031209	81890	Hs.631638	NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
0.101054-14	chr15	82635391	82635890	+	0	NA	intron (NM_001164465, intron 8 of 9)	intron (NM_001164465, intron 8 of 9)	-11714	NR_004847	100134869	Hs.735222	NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	ubiquitin conjugating enzyme E2 Q2 pseudogene 2	pseudo
5.12862-8	chr5	70716147	70716646	+	0	NA	intron (NR_134268, intron 2 of 2)	intron (NR_134268, intron 2 of 2)	25767	NR_134268	102724392	Hs.625874	NR_134268		LOC102724392	-	uncharacterized LOC102724392	ncRNA
0.93665-7	chr4	154485645	154486144	+	0	NA	intron (NM_015196, intron 7 of 34)	intron (NM_015196, intron 7 of 34)	-75426	NR_134873	100419170	Hs.382102	NR_134873	ENSG00000250771	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
9.70616	chr2	14541965	14542464	+	0	NA	Intergenic	Intergenic	-1132	NR_103814	100499171	Hs.565606	NR_103814	ENSG00000230448	LINC00276	NCRNA00276	long intergenic non-protein coding RNA 276	ncRNA
2.63603-5	chr6	20028216	20028715	+	0	NA	Intergenic	Intergenic	184230	NM_001080480	154141	Hs.377830	NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
6.51695-15	chr14	75446111	75446610	+	0	NA	Intergenic	Intergenic	-23252	NM_014239	8892	Hs.409137	NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B subunit beta	protein-coding
2.18245-3	chr6	76312103	76312602	+	0	NA	intron (NM_015571, intron 1 of 23)	CpG	1127	NM_015571	26054	Hs.485784	NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO1/sentrin specific peptidase 6	protein-coding
1.42065-12	chr7	133668681	133669180	+	0	NA	intron (NM_021807, intron 14 of 17)	intron (NM_021807, intron 14 of 17)	-143175	NM_144648	136332	Hs.149774	NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
11.1014	chr2	4067511	4068010	+	0	NA	Intergenic	Intergenic	46009	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
3.77786-6	chrUn_gl000221	22589	23088	+	0	NA	NA	MER61C|LTR|ERV1	NA	NA								
21.8642	chr10	121544230	121544729	+	0	NA	intron (NM_014937, intron 3 of 19)	L1MB8|LINE|L1	-34290	NM_001243194	22876	Hs.369755	NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
1.21478-10	chr2	128127578	128128077	+	0	NA	Intergenic	LTR22C|LTR|ERVK	-27022	NM_006609	10746	Hs.145605	NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
8.9279	chr12	31881245	31881744	+	0	NA	intron (NR_103522, intron 1 of 8)	intron (NR_103522, intron 1 of 8)	614	NR_103522	196394	Hs.585084	NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
5.14279-8	chr2	112812020	112812519	+	0	NA	promoter-TSS (NM_032824)	promoter-TSS (NM_032824)	-531	NM_032824	84910	Hs.656298	NM_032824	ENSG00000153214	TMEM87B	-	transmembrane protein 87B	protein-coding
2.51812-3	chr7	132260041	132260540	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	1033	NM_020911	91584	Hs.511454	NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
2.66001-2	chr9	136439314	136439813	+	0	NA	intron (NM_001145320, intron 18 of 18)	intron (NM_001145320, intron 18 of 18)	5805	NM_001080515	642968	Hs.173134	NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
0.0788851-11	chr9	136222907	136223406	+	0	NA	promoter-TSS (NM_001278928)	promoter-TSS (NM_001278928)	205	NM_003172	6834	Hs.512464	NM_003172	ENSG00000148290	SURF1	CMT4K	SURF1, cytochrome c oxidase assembly factor	protein-coding
40.2273	chr12	103728225	103728724	+	0	NA	intron (NM_001099336, intron 4 of 5)	intron (NM_001099336, intron 4 of 5)	161314	NM_001278419	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
3.99027-27	chr4	171009837	171010336	+	0	NA	intron (NM_001286683, intron 2 of 13)	MLT1A1|LTR|ERVL-MaLR	1097	NM_016228	51166	Hs.529735	NM_016228	ENSG00000109576	AADAT	KAT2|KATII|KYAT2	aminoadipate aminotransferase	protein-coding
9.20819-5	chr2	210430879	210431378	+	0	NA	intron (NM_001039538, intron 2 of 14)	intron (NM_001039538, intron 2 of 14)	-13275	NM_031847	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
0.783135-27	chr5	76507100	76507599	+	0	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	643	NM_001029851	8622	Hs.584830	NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
9.06578-6	chr18	61930399	61930898	+	0	NA	intron (NR_033881, intron 3 of 9)	L1MC5|LINE|L1	-3358	NR_033983	400654	Hs.434235	NR_033983	ENSG00000266952	LINC01538	-	long intergenic non-protein coding RNA 1538	ncRNA
0.79355-21	chr5	14185447	14185946	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	41885	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
12.7984-2	chr12	123945842	123946341	+	0	NA	intron (NM_180699, intron 1 of 1)	intron (NM_180699, intron 1 of 1)	1840	NM_180699	11066	Hs.632738	NM_007020	ENSG00000184209	SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
1.50581-35	chr1	234754835	234755334	+	0	NA	Intergenic	Intergenic	-9813	NM_001077397	359948	Hs.350268	NM_182972	ENSG00000168264	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding
0.809219-14	chr2	10554677	10555176	+	0	NA	intron (NM_134421, intron 3 of 5)	intron (NM_134421, intron 3 of 5)	32049	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
1.21478-3	chr9	38319089	38319588	+	0	NA	Intergenic	Intergenic	-73323	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
0.390538-21	chr12	133613684	133614183	+	0	NA	promoter-TSS (NR_110091)	promoter-TSS (NR_110091)	61	NM_001289971	7637	Hs.445019	NM_003428	ENSG00000198040	ZNF84	HPF2	zinc finger protein 84	protein-coding
3.28827-7	chr18	29237643	29238142	+	0	NA	intron (NM_001330570, intron 2 of 7)	intron (NM_001330570, intron 2 of 7)	26794	NM_004775	9331	Hs.591063	NM_004775	ENSG00000118276	B4GALT6	B4Gal-T6|beta4Gal-T6	beta-1,4-galactosyltransferase 6	protein-coding
0.594835-19	chr10	90639790	90640765	+	0	NA	5' UTR (NM_020799, exon 1 of 11)	5' UTR (NM_020799, exon 1 of 11)	333	NM_020799	57559	Hs.16229	NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
3.87216-3	chr2	117957063	117957562	+	0	NA	Intergenic	Intergenic	-614943	NM_006773	8886	Hs.744922	NM_006773	ENSG00000088205	DDX18	MrDb	DEAD-box helicase 18	protein-coding
4.77556-2	chr17	7486752	7487251	+	0	NA	promoter-TSS (NM_004870)	promoter-TSS (NM_004870)	36	NM_004870	9526	Hs.246381	NM_004870	ENSG00000129255	MPDU1	CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15	mannose-P-dolichol utilization defect 1	protein-coding
1.11259-11	chr6	39164316	39164815	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	32686	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
2.18963-25	chr1	41131184	41131683	+	0	NA	promoter-TSS (NM_014747)	promoter-TSS (NM_014747)	-109	NM_014747	9783	Hs.654808	NM_014747	ENSG00000117016	RIMS3	NIM3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
0.867161-6	chr7	38350831	38351330	+	0	NA	Intergenic	CpG	-30098	NR_040085	100506776	Hs.173034	NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
2.13959-12	chr9	117501085	117501584	+	0	NA	Intergenic	Intergenic	53476	NM_001204344	9966	Hs.23349	NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	tumor necrosis factor superfamily member 15	protein-coding
10.2273-2	chr9	45237946	45238445	+	0	NA	Intergenic	Intergenic	-232905	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
4.58421-4	chr14	91884352	91884851	+	0	NA	promoter-TSS (NM_001080414)	promoter-TSS (NM_001080414)	-413	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
0.958256-4	chr3	30648473	30648972	+	0	NA	intron (NM_003242, intron 1 of 6)	CpG	728	NM_003242	7048	Hs.82028	NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor beta receptor 2	protein-coding
3.1158-10	chr12	88947632	88948131	+	0	NA	intron (NM_003994, intron 1 of 8)	intron (NM_003994, intron 1 of 8)	26369	NM_000899	4254	Hs.1048	NM_000899	ENSG00000049130	KITLG	DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7	KIT ligand	protein-coding
22.9843	chr6	149132596	149133095	+	0	NA	intron (NM_005715, intron 1 of 7)	MLT1H1|LTR|ERVL-MaLR	64574	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
35.376-4	chr18	51773399	51774156	+	0	NA	Intergenic	Intergenic	-22072	NM_007195	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB	DNA polymerase iota	protein-coding
7.69551-10	chr5	176066925	176067424	+	0	NA	intron (NM_001099408, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	-7214	NM_130465	26262	Hs.532129	NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
9.10095-5	chr13	71303416	71303915	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-285608	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
0.385789-25	chr20	43375633	43376132	+	0	NA	intron (NM_022358, intron 1 of 1)	MIRb|SINE|MIR	-1014	NR_132377	106144538	Hs.255479	NR_132377		KCNK15-AS1	-	KCNK15 antisense RNA 1 (head to head)	ncRNA
1.03474-10	chr1	161087183	161087682	+	0	NA	promoter-TSS (NM_001185094)	promoter-TSS (NM_001185094)	-430	NM_001185092	4817	Hs.146406	NM_005600	ENSG00000158793	NIT1	-	nitrilase 1	protein-coding
53.9794	chr7	50619549	50620048	+	0	NA	intron (NM_001082971, intron 1 of 14)	intron (NM_001082971, intron 1 of 14)	8970	NM_001242888	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
0.491485-10	chr13	21278096	21278595	+	0	NA	exon (NM_138284, exon 2 of 3)	exon (NM_138284, exon 2 of 3)	863	NM_138284	53342	Hs.655142	NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
11.6622-2	chr11	117573876	117574375	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	93851	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
0.550241-8	chrX	23919885	23920384	+	0	NA	intron (NR_026545, intron 1 of 7)	L2c|LINE|L2	5923	NR_026545	79135	Hs.495851	NM_024122	ENSG00000184831	APOO	FAM121B|MIC26|Mic23|My025	apolipoprotein O	protein-coding
4.04504-5	chr22	18269519	18270018	+	0	NA	TTS (NM_015241)	TTS (NM_015241)	9712	NR_103718	200298	Hs.517397	NR_103718	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
29.2082	chr7	11789197	11789696	+	0	NA	intron (NM_015204, intron 1 of 26)	HERVK22-int|LTR|ERVK	82378	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin type 1 domain containing 7A	protein-coding
5.40608-8	chr14	106829226	106829725	+	0	NA	Intergenic	Intergenic	85206	NR_033375	338004	Hs.569411	NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
36.6154-2	chr2	224732680	224733179	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-30610	NM_001039569	130340	Hs.632555	NM_178814	ENSG00000152056	AP1S3	PSORS15	adaptor related protein complex 1 sigma 3 subunit	protein-coding
4.44906-13	chr6	41611887	41612386	+	0	NA	intron (NM_001300805, intron 2 of 3)	intron (NM_001300805, intron 2 of 3)	5941	NM_001300805	4188	Hs.520119	NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
0.93665-21	chr1	227950125	227950624	+	0	NA	intron (NM_001323934, intron 3 of 4)	intron (NM_001323934, intron 3 of 4)	26978	NM_001323934	116841	Hs.325081	NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
0.0744648-40	chr19	30433305	30433804	+	0	NA	non-coding (NR_045557, exon 1 of 10)	non-coding (NR_045557, exon 1 of 10)	408	NM_003796	8725	Hs.466391	NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1, prefoldin like chaperone	protein-coding
1.26679-3	chr21	39286639	39287138	+	0	NA	intron (NM_002240, intron 1 of 3)	intron (NM_002240, intron 1 of 3)	1853	NM_002240	3763	Hs.626242	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium voltage-gated channel subfamily J member 6	protein-coding
4.46117-13	chr2	219845933	219846432	+	0	NA	3' UTR (NM_017521, exon 3 of 3)	3' UTR (NM_017521, exon 3 of 3)	4197	NM_017521	54738	Hs.234759	NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV, ETS transcription factor	protein-coding
5.95166-8	chr2	218829557	218830056	+	0	NA	Intergenic	Intergenic	-13624	NR_135524	105373878	Hs.630709	NR_135524	ENSG00000223923	LOC105373878	-	uncharacterized LOC105373878	ncRNA
0.872467-7	chr1	212953414	212953913	+	0	NA	intron (NM_001042549, intron 4 of 6)	SVA_D|Other|Other	11476	NM_001297736	25936	Hs.497692	NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1, MIS12 kinetochore complex component	protein-coding
0.181814-31	chr20	13878627	13879126	+	0	NA	intron (NR_073207, intron 5 of 18)	HAL1|LINE|L1	92389	NM_001271539	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	SEL1L2 ERAD E3 ligase adaptor subunit	protein-coding
0.385789-37	chr14	20800828	20801327	+	0	NA	intron (NM_021178, intron 1 of 6)	intron (NM_021178, intron 1 of 6)	394	NM_021178	57820	Hs.107003	NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
3.41035-15	chr15	56221406	56221905	+	0	NA	intron (NM_001329212, intron 4 of 28)	L1PA15|LINE|L1	-12326	NM_001284340	4734	Hs.1565	NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
0.555173-14	chr13	47440237	47440736	+	0	NA	intron (NM_001165947, intron 2 of 2)	intron (NM_001165947, intron 2 of 2)	14211	NR_103752	100874082	Hs.569281	NR_046612	ENSG00000224517	HTR2A-AS1	-	HTR2A antisense RNA 1	ncRNA
0.486625-21	chr1	220863309	220863808	+	0	NA	promoter-TSS (NM_024709)	promoter-TSS (NM_024709)	-70	NM_024709	79762	Hs.519839	NM_024709	ENSG00000162817	C1orf115	-	chromosome 1 open reading frame 115	protein-coding
2.76544-7	chr10	100206386	100206885	+	0	NA	promoter-TSS (NM_001322476)	promoter-TSS (NM_001322476)	85	NM_001311345	3257	Hs.404568	NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
4.11168	chr16	75121474	75121973	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	28947	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
0.90444-11	chr1	229829999	229830498	+	0	NA	Intergenic	Intergenic	68285	NM_014777	9816	Hs.533628	NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding
9.24453-21	chr9	13841761	13842260	+	0	NA	Intergenic	Intergenic	-85960	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
5.0307-12	chr8	67054461	67054960	+	0	NA	intron (NM_184087, intron 4 of 4)	intron (NM_184087, intron 4 of 4)	15432	NM_184087	84675	Hs.85524	NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
1.37272-21	chr3	170188782	170189281	+	0	NA	intron (NR_135557, intron 1 of 2)	intron (NR_135557, intron 1 of 2)	3958	NR_135555	101928583	Hs.407600	NR_135555	ENSG00000013297	LOC101928583	-	uncharacterized LOC101928583	ncRNA
10.5601-2	chr22	18527378	18527877	+	0	NA	Intergenic	Intergenic	15476	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	LINC01634	-	long intergenic non-protein coding RNA 1634	ncRNA
6.30784	chr15	45997797	45998651	+	0	NA	intron (NR_135680, intron 1 of 4)	CT-rich|Low_complexity|Low_complexity	831	NR_135680	105370802	Hs.447522	NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
1.9044-8	chr13	52571994	52572493	+	0	NA	intron (NM_001330578, intron 1 of 19)	intron (NM_001330578, intron 1 of 19)	13387	NM_000053	540	Hs.492280	NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
7.56962-20	chr12	2393897	2394396	+	0	NA	intron (NR_046769, intron 1 of 2)	intron (NR_046769, intron 1 of 2)	15204	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
2.29885-3	chr4	103422839	103423338	+	0	NA	promoter-TSS (NM_001319226)	promoter-TSS (NM_001319226)	33	NM_001319226	4790	Hs.618430	NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor kappa B subunit 1	protein-coding
9.82967	chr17	17319331	17319830	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-60720	NM_018019	55090	Hs.244595	NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
1.89767-2	chr17	79504876	79505375	+	0	NA	TTS (NM_012418)	TTS (NM_012418)	9708	NM_012418	25794	Hs.118555	NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
4.31798-21	chr6	81679204	81679703	+	0	NA	Intergenic	Intergenic	782975	NM_017633	55603	Hs.10784	NM_017633	ENSG00000112773	FAM46A	C6orf37|XTP11	family with sequence similarity 46 member A	protein-coding
23.0892-4	chr2	16133297	16133796	+	0	NA	Intergenic	Intergenic	-51175	NM_001329968	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	protein-coding
6.94649-2	chr1	229544370	229544869	+	0	NA	Intergenic	Intergenic	25224	NM_001100	58	Hs.1288	NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM	actin, alpha 1, skeletal muscle	protein-coding
3.37242-10	chr2	110813661	110814160	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	13709	NR_036225	100422994		NR_036225	ENSG00000265682	MIR4267	-	microRNA 4267	ncRNA
0.69051-3	chr3	49966818	49967317	+	0	NA	exon (NM_001142501, exon 1 of 5)	exon (NM_001142501, exon 1 of 5)	378	NM_001142501	84315	Hs.655014	NM_032355	ENSG00000164077	MON1A	SAND1	MON1 homolog A, secretory trafficking associated	protein-coding
8.96196-3	chr18	57585570	57586069	+	0	NA	Intergenic	Intergenic	18627	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
1.14074-3	chr17	32960241	32960740	+	0	NA	intron (NM_001304438, intron 6 of 8)	intron (NM_001304438, intron 6 of 8)	52722	NM_001304438	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
18.9963-2	chr4	185020448	185020947	+	0	NA	intron (NM_153343, intron 6 of 7)	intron (NM_153343, intron 6 of 7)	118417	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
8.21023-4	chr19	19343052	19343551	+	0	NA	intron (NM_004386, intron 8 of 14)	intron (NM_004386, intron 8 of 14)	20519	NM_004386	1463	Hs.169047	NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
0.301184-34	chr12	57634198	57634697	+	0	NA	promoter-TSS (NM_020142)	promoter-TSS (NM_020142)	28	NM_020142	56901	Hs.75069	NM_020142	ENSG00000185633	NDUFA4L2	NUOMS	NDUFA4, mitochondrial complex associated like 2	protein-coding
10.5502-2	chr16	21531314	21532210	+	0	NA	promoter-TSS (NR_002594)	promoter-TSS (NR_002594)	3	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
14.9485-7	chr16	75320773	75321272	+	0	NA	Intergenic	MIRc|SINE|MIR	-19071	NM_001170715	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
24.389	chr9	111239790	111240289	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	378236	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
0.0174066-5	chr17	71088628	71089127	+	0	NA	promoter-TSS (NM_139177)	promoter-TSS (NM_139177)	-24	NM_001159770	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding
6.67562-5	chr12	64130799	64131298	+	0	NA	Intergenic	LTR9|LTR|ERV1	-42535	NM_014254	10329	Hs.216386	NM_014254	ENSG00000118600	TMEM5	HP10481|MDDGA10	transmembrane protein 5	protein-coding
1.57391-6	chr3	156877739	156878238	+	0	NA	5' UTR (NM_001308185, exon 1 of 11)	5' UTR (NM_001308185, exon 1 of 11)	561	NM_020307	57018	Hs.4859	NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
7.42321-7	chr4	40578966	40579465	+	0	NA	intron (NM_001098634, intron 1 of 6)	intron (NM_001098634, intron 1 of 6)	52668	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
1.87087	chr17	80245844	80246343	+	0	NA	Intergenic	Intergenic	4597	NR_135639	101929511	Hs.147682	NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
1.36677-14	chr1	154909449	154909948	+	0	NA	promoter-TSS (NM_006556)	promoter-TSS (NM_006556)	-214	NM_006556	10654	Hs.30954	NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
0.824945-10	chr10	103796160	103796659	+	0	NA	intron (NM_024541, intron 2 of 25)	SVA_C|Other|Other	19523	NM_024541	79591	Hs.16004	NM_024541	ENSG00000120029	C10orf76	-	chromosome 10 open reading frame 76	protein-coding
0.419142-30	chr12	65218090	65218589	+	0	NA	promoter-TSS (NM_001330186)	promoter-TSS (NM_001330186)	-13	NM_015279	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
9.62574-7	chr17	27453061	27453560	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	14087	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
26.4975-9	chr14	75441164	75441663	+	0	NA	Intergenic	Intergenic	-18946	NM_002632	5228	Hs.252820	NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
2.02732-2	chr14	55032504	55033003	+	0	NA	Intergenic	CpG	-1577	NM_015589	23034	Hs.98259	NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
4.44906-8	chr7	29923205	29923704	+	0	NA	intron (NM_001080529, intron 4 of 8)	intron (NM_001080529, intron 4 of 8)	77284	NM_001080529	644150	Hs.380698	NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
0.305841-22	chr7_gl000195_random	94963	95462	+	0	NA	Intergenic	Intergenic	-8477	NM_001347682	389831	Hs.743984	NM_001242480	ENSG00000276256	LOC389831	-	uncharacterized LOC389831	protein-coding
0.535477-9	chr8	51553735	51554234	+	0	NA	intron (NM_001321778, intron 13 of 16)	L2a|LINE|L2	477293	NM_001321778	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
46.3827	chr2	122705185	122705684	+	0	NA	Intergenic	Intergenic	192313	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
0.80399-5	chr6	164527455	164527954	+	0	NA	Intergenic	Intergenic	-435188	NR_134620	102724152	Hs.738183	NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
4.24812-3	chr2	121009386	121010280	+	0	NA	promoter-TSS (NM_002881)	promoter-TSS (NM_002881)	-581	NM_002881	5899	Hs.469820	NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
9.78811-3	chr2	169088083	169088582	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	15773	NM_013233	27347	Hs.276271	NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
0.109954-28	chr15	101679562	101680061	+	0	NA	Intergenic	Intergenic	112326	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
1.37272-24	chr7	4922747	4923246	+	0	NA	intron (NM_018059, intron 1 of 14)	CpG	339	NM_018059	55698	Hs.667336	NM_018059	ENSG00000157927	RADIL	RASIP2	Rap associating with DIL domain	protein-coding
0.452752-13	chr14	54863907	54864406	+	0	NA	intron (NM_001130851, intron 1 of 6)	CpG	483	NM_005192	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
12.7984	chr6	151201273	151201772	+	0	NA	intron (NM_001242769, intron 4 of 7)	L1MA6|LINE|L1	14053	NM_001242768	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
17.5449-2	chr1	113794823	113795322	+	0	NA	Intergenic	L2|LINE|L2	-46197	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
2.66803-8	chr6	53516169	53516668	+	0	NA	exon (NM_001003760, exon 3 of 3)	exon (NM_001003760, exon 3 of 3)	14088	NM_001003760	401265	Hs.131064	NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
0.835461	chr13	28713235	28713734	+	0	NA	promoter-TSS (NR_029383)	promoter-TSS (NR_029383)	-173	NR_029383	100288730	Hs.123191	NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
3.90406-15	chr18	10519995	10520494	+	0	NA	Intergenic	Intergenic	-5629	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
56.8613	chr3	177288026	177288525	+	0	NA	intron (NR_047568, intron 2 of 3)	L2c|LINE|L2	128566	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
0.00434512-41	chr18	43964978	43965477	+	0	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	51040	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
1.20904-4	chr11	116968435	116968934	+	0	NA	intron (NM_025164, intron 1 of 23)	intron (NM_025164, intron 1 of 23)	447	NM_001281748	23387	Hs.167451	NM_025164	ENSG00000160584	SIK3	L19|QSK|SIK-3	SIK family kinase 3	protein-coding
0.195421-23	chr5	73497125	73497624	+	0	NA	Intergenic	Intergenic	106776	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
3.81952-2	chr22	36124822	36125321	+	0	NA	intron (NM_030642, intron 4 of 4)	intron (NM_030642, intron 4 of 4)	11152	NM_030642	80831	Hs.326561	NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
4.04504-4	chr12	131040276	131040775	+	0	NA	Intergenic	Intergenic	-38115	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
0.0966115-8	chr5	160971221	160971720	+	0	NA	intron (NM_021911, intron 4 of 10)	intron (NM_021911, intron 4 of 10)	3660	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding
1.40261-3	chr5	1948859	1949358	+	0	NA	Intergenic	CpG	61663	NR_109912	101929081	Hs.519180	NR_109912	ENSG00000249326	CTD-2194D22.4	-	uncharacterized LOC101929081	ncRNA
3.59519-12	chr2	83758274	83758773	+	0	NA	Intergenic	LTR76|LTR|ERV1	674596	NR_033423	1720	Hs.169235	NR_033423		DHFRP3	-	dihydrofolate reductase pseudogene 3	pseudo
3.34419-5	chr12	10876436	10876935	+	0	NA	promoter-TSS (NM_003651)	promoter-TSS (NM_003651)	-732	NM_003651	8531	Hs.221889	NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
2.06908-9	chr2	125300479	125300978	+	0	NA	intron (NM_130773, intron 10 of 23)	intron (NM_130773, intron 10 of 23)	517864	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
61.3371	chr9	106295395	106295894	+	0	NA	Intergenic	L1PA14|LINE|L1	-208329	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
7.18967-7	chr6	2908860	2909359	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5563	NM_004155	5272	Hs.104879	NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
1.53045-7	chr9	110256472	110256971	+	0	NA	Intergenic	L2a|LINE|L2	-4720	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
3.80907-6	chr9	36166457	36166956	+	0	NA	Intergenic	CpG	-2683	NM_005893	881	Hs.115460	NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
4.13413-6	chr9	77468277	77468776	+	0	NA	intron (NM_001177310, intron 3 of 38)	SVA_B|Other|Other	33737	NM_001177311	140803	Hs.272225	NM_017662	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel subfamily M member 6	protein-coding
1.15205-8	chr14	106041274	106041773	+	0	NA	Intergenic	Intergenic	43331	NR_135205	105370697	Hs.148580	NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
0.428718-30	chr14	88711611	88712110	+	0	NA	intron (NM_021161, intron 2 of 6)	intron (NM_021161, intron 2 of 6)	25395	NM_138318	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
0.400052-23	chr1	94174353	94174852	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-27208	NM_003567	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
13.1336-4	chr1	40226225	40227115	+	0	NA	intron (NM_001720, intron 6 of 6)	intron (NM_001720, intron 6 of 6)	10350	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
0.0305075-56	chr3	148709061	148709560	+	0	NA	5' UTR (NM_001184721, exon 1 of 6)	5' UTR (NM_001184721, exon 1 of 6)	115	NM_001184720	2992	Hs.477892	NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
10.4479-2	chr4	2932445	2932944	+	0	NA	TTS (NM_001119)	TTS (NM_001119)	3270	NM_001120	10227	Hs.632581	NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
1.85087-11	chr7	44265197	44265696	+	0	NA	intron (NM_172084, intron 12 of 15)	intron (NM_172084, intron 12 of 15)	24868	NM_006555	10652	Hs.520794	NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding
0.798767-28	chr20	30194972	30195471	+	0	NA	TTS (NR_036161)	TTS (NR_036161)	232	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
0.5061-26	chr9	140130854	140131605	+	0	NA	TTS (NM_001177317)	TTS (NM_001177317)	-4482	NM_006088	10383	Hs.433615	NM_006088	ENSG00000188229	TUBB4B	Beta2|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
1.4752-7	chr11	33795381	33795880	+	0	NA	promoter-TSS (NR_120550)	promoter-TSS (NR_120550)	441	NM_012175	26273	Hs.406787	NM_012175	ENSG00000110429	FBXO3	FBA|FBX3	F-box protein 3	protein-coding
6.81937-11	chr10	102106071	102106570	+	0	NA	promoter-TSS (NM_005063)	promoter-TSS (NM_005063)	-452	NM_005063	6319	Hs.558396	NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
0.105502-11	chr17	27181737	27182236	+	0	NA	promoter-TSS (NR_134328)	promoter-TSS (NR_134328)	11	NM_001317986	26284	Hs.3426	NM_005702	ENSG00000132591	ERAL1	CEGA|ERA|ERA-W|ERAL1A|H-ERA|HERA-A|HERA-B	Era like 12S mitochondrial rRNA chaperone 1	protein-coding
15.9688-4	chr21	46257442	46257941	+	0	NA	Intergenic	Intergenic	-19647	NM_006936	6612	Hs.474005	NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin-like modifier 3	protein-coding
2.93282-12	chr6	86856449	86856948	+	0	NA	Intergenic	LTR14B|LTR|ERVK	-468247	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5	ncRNA
6.51695-7	chr3	112751824	112752323	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13493	NM_001319112	25871	Hs.591288	NM_015412	ENSG00000163608	NEPRO	C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
15.544-3	chr18	54875167	54875666	+	0	NA	Intergenic	Intergenic	61123	NM_001257964	284257	Hs.127882	NM_001257964	ENSG00000228075	BOD1L2	BOD1P|FAM44C	biorientation of chromosomes in cell division 1 like 2	protein-coding
0.419142-48	chr4	15692974	15693473	+	0	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	9871	NM_001145191	285550	Hs.399980	NM_001145191	ENSG00000237765	FAM200B	-	family with sequence similarity 200 member B	protein-coding
1.40862	chr12	25538920	25539675	+	0	NA	Intergenic	CpG	-135432	NM_033360	3845	Hs.505033	NM_004985	ENSG00000133703	KRAS	C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
4.85452	chr15	55443776	55444275	+	0	NA	Intergenic	Intergenic	45206	NM_016304	51187	Hs.274772	NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
0.0436481-28	chr4	138715624	138716123	+	0	NA	Intergenic	Intergenic	-262221	NM_019035	54510	Hs.591691	NM_019035	ENSG00000189184	PCDH18	PCDH68L	protocadherin 18	protein-coding
0.0612309-33	chr1	45956788	45957287	+	0	NA	promoter-TSS (NM_007170)	promoter-TSS (NM_007170)	-197	NM_001320800	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
2.00659-4	chr7	139762156	139762655	+	0	NA	non-coding (NR_130117, exon 1 of 11)	non-coding (NR_130117, exon 1 of 11)	1116	NM_022750	64761	Hs.12646	NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
0.268721-21	chr7	150782687	150783186	+	0	NA	promoter-TSS (NM_001281300)	promoter-TSS (NM_001281300)	18	NM_001281300	116988	Hs.647075	NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
0.400052-8	chr17	57184347	57184846	+	0	NA	promoter-TSS (NM_015294)	promoter-TSS (NM_015294)	-314	NM_001320987	4591	Hs.579079	NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
5.00313-3	chr12	6419550	6420049	+	0	NA	promoter-TSS (NM_001144856)	promoter-TSS (NM_001144856)	197	NM_018173	55200	Hs.631660	NM_018173	ENSG00000008323	PLEKHG6	MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
0.925886-4	chr4	141948467	141948966	+	0	NA	intron (NM_020724, intron 1 of 6)	MLT1J1|LTR|ERVL-MaLR	105900	NM_020724	57484	Hs.659104	NM_020724	ENSG00000170153	RNF150	-	ring finger protein 150	protein-coding
0.282604-10	chrX	12993422	12993921	+	0	NA	intron (NM_021109, intron 1 of 2)	CpG	445	NM_021109	7114	Hs.437277	NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4, X-linked	protein-coding
1.15205-9	chr13	45915784	45916283	+	0	NA	promoter-TSS (NM_001286273)	promoter-TSS (NM_001286273)	553	NR_024458	100190939	Hs.375766	NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
0.070049	chr3	185292379	185292878	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	-11403	NM_021627	59343	Hs.401388	NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
27.4958	chr16	1588748	1589247	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	5339	NM_024600	79652	Hs.459652	NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
1.67491-10	chr4	174178815	174179314	+	0	NA	intron (NM_017423, intron 2 of 11)	intron (NM_017423, intron 2 of 11)	75856	NM_001130689	3148	Hs.434953	NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
0.726296-7	chr1	11415542	11416041	+	0	NA	Intergenic	Intergenic	82536	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
3.01899-21	chr13	114519848	114520347	+	0	NA	intron (NR_044995, intron 1 of 4)	intron (NR_044995, intron 1 of 4)	1514	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
2.32102-8	chr5	70820439	70820938	+	0	NA	intron (NM_018429, intron 25 of 38)	SVA_D|Other|Other	-62427	NM_022132	64087	Hs.604789	NM_022132	ENSG00000131844	MCCC2	MCCB	methylcrotonoyl-CoA carboxylase 2	protein-coding
1.70053-16	chr11	110581687	110582186	+	0	NA	intron (NM_001258416, intron 1 of 15)	CpG	837	NM_001258415	57569	Hs.6136	NM_020809	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
0.101054-20	chr3	193722854	193723353	+	0	NA	TTS (NR_136179)	TTS (NR_136179)	-1655	NR_033944	647323	Hs.652830	NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
1.53663-30	chr9	33676839	33677338	+	0	NA	promoter-TSS (NR_103745)	promoter-TSS (NR_103745)	-178	NR_103745	101243555	Hs.598470	NR_103745	ENSG00000281128	PTENP1-AS	PTENP1as|PTENpg1-asRNA	PTENP1 antisense RNA	ncRNA
0.282604-21	chr14	81435138	81435637	+	0	NA	intron (NM_001018036, intron 1 of 8)	ERVL-E-int|LTR|ERVL	13518	NM_000369	7253	Hs.160411	NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
0.589858-12	chr12	122501867	122502366	+	0	NA	intron (NR_135044, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	920	NR_135044	100506691	Hs.536336	NR_135044	ENSG00000256546	LOC100506691	-	uncharacterized LOC100506691	ncRNA
18.5078	chr14	82148986	82149485	+	0	NA	Intergenic	MER68|LTR|ERVL	-59830	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
0.0130484-26	chr17	40464166	40464815	+	0	NA	TTS (NM_003152)	TTS (NM_003152)	24416	NM_001288719	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
0.186345	chr9	67339768	67340267	+	0	NA	Intergenic	Intergenic	49566	NR_136300	102724580	Hs.494013	NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
6.03801-10	chr10	82116285	82116784	+	0	NA	promoter-TSS (NM_001269053)	promoter-TSS (NM_001269053)	10	NM_001270041	84332	Hs.741500	NM_032372	ENSG00000133665	DYDC2	-	DPY30 domain containing 2	protein-coding
3.50665-9	chr17	38228371	38228870	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	9552	NM_003250	7067	Hs.724	NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1	thyroid hormone receptor, alpha	protein-coding
0.877779-8	chrX	134164356	134164855	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-1728	NM_001078171	8933	Hs.522789	NM_003928	ENSG00000134590	FAM127A	CXX1|MAR8C|MART8C|Mar8|Mart8	family with sequence similarity 127 member A	protein-coding
8.50781-8	chr11	82700930	82701429	+	0	NA	intron (NM_014488, intron 4 of 5)	intron (NM_014488, intron 4 of 5)	44432	NM_001286059	27314	Hs.40758	NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
12.5414-3	chr8	37557695	37558194	+	0	NA	TTS (NM_025069)	TTS (NM_025069)	4675	NM_025069	80139	Hs.288042	NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
0.329203-19	chr21	43298490	43298989	+	0	NA	intron (NM_022115, intron 3 of 30)	intron (NM_022115, intron 3 of 30)	852	NR_104257	63977	Hs.473893	NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
8.86057-20	chr19	38842525	38843024	+	0	NA	intron (NM_001330496, intron 7 of 27)	intron (NM_001330496, intron 7 of 27)	16331	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding
4.52225-13	chr19	47972850	47973349	+	0	NA	intron (NM_015063, intron 1 of 9)	intron (NM_015063, intron 1 of 9)	2208	NM_015063	6543	Hs.172884	NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
0.716041-7	chr5	131561144	131561643	+	0	NA	intron (NM_001017974, intron 1 of 14)	intron (NM_001017974, intron 1 of 14)	1542	NM_001017973	8974	Hs.519568	NM_004199	ENSG00000072682	P4HA2	MYP25	prolyl 4-hydroxylase subunit alpha 2	protein-coding
33.4008-2	chr12	130947677	130948176	+	0	NA	intron (NM_015347, intron 3 of 18)	intron (NM_015347, intron 3 of 18)	54484	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
8.96196	chr9	120176348	120176847	+	0	NA	intron (NM_014010, intron 1 of 21)	CpG	720	NM_014010	23245	Hs.601562	NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
0.395292-7	chr6	155535042	155535541	+	0	NA	intron (NM_012454, intron 14 of 25)	MER52A|LTR|ERV1	-2806	NM_001010927	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
2.72459-4	chr17	4458471	4458970	+	0	NA	promoter-TSS (NM_014520)	promoter-TSS (NM_014520)	-39	NM_014520	10514	Hs.22824	NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein 1a	protein-coding
0.5061-16	chr5	172755201	172755700	+	0	NA	5' UTR (NM_003714, exon 1 of 4)	5' UTR (NM_003714, exon 1 of 4)	1056	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
12.233-4	chr4	170775203	170775702	+	0	NA	Intergenic	Intergenic	-96359	NM_017867	54969	Hs.406756	NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
0.0921731-9	chr4	5208022	5208521	+	0	NA	intron (NM_001345969, intron 3 of 10)	intron (NM_001345969, intron 3 of 10)	155027	NM_001306082	55351	Hs.133062	NM_018401	ENSG00000152953	STK32B	HSA250839|STK32|STKG6|YANK2	serine/threonine kinase 32B	protein-coding
0.614803	chr9	1050738	1051714	+	0	NA	intron (NM_001130865, intron 2 of 5)	intron (NM_001130865, intron 2 of 5)	606	NM_181872	10655	Hs.59506	NM_006557	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
6.32644-3	chr17	30507167	30507666	+	0	NA	intron (NR_110083, intron 6 of 20)	SVA_A|Other|Other	-28826	NR_002222	503640	Hs.631752	NR_002222		ARGFXP2	-	arginine-fifty homeobox pseudogene 2	pseudo
2.0412-9	chr7	56286114	56286613	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-102273	NM_001145712	389493	Hs.177948	NM_001145712	ENSG00000185290	NUPR2	NUPR1L	nuclear protein 2, transcriptional regulator	protein-coding
1.73277-14	chr2	186008912	186009411	+	0	NA	Intergenic	MER52A|LTR|ERV1	22638	NR_136319	105373782	Hs.128285	NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
0.996329-12	chr19	48837082	48837581	+	0	NA	exon (NM_001303538, exon 6 of 7)	exon (NM_001303538, exon 6 of 7)	8075	NM_001313905	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
5.81699-6	chr2	135533602	135534101	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-57280	NM_030923	81615	Hs.369471	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
17.0997-2	chr12	125152086	125152585	+	0	NA	Intergenic	Intergenic	-100325	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
0.428718-10	chr12	92428626	92429125	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	106614	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
16.4397	chr12	130034842	130035341	+	0	NA	intron (NM_133448, intron 2 of 8)	intron (NM_133448, intron 2 of 8)	341945	NR_110058	101927735	Hs.569212	NR_110058	ENSG00000256699	LOC101927735	-	uncharacterized LOC101927735	ncRNA
9.39302-5	chr5	32170795	32171294	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	3381	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
48.6646	chr1	40366141	40366640	+	0	NA	3' UTR (NM_005376, exon 2 of 2)	3' UTR (NM_005376, exon 2 of 2)	1297	NM_001033082	4610	Hs.437922	NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog	protein-coding
0.462403-12	chr7	119332821	119333320	+	0	NA	intron (NR_131960, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	214359	NR_131961	105375475	Hs.566654	NR_131960	ENSG00000225546	LVCAT5	-	liver cancer-associated transcript 5	ncRNA
9.17215-7	chr15	71163259	71163758	+	0	NA	intron (NM_001284357, intron 1 of 16)	SVA_B|Other|Other	-16904	NM_018357	55323	Hs.416755	NM_018357	ENSG00000166173	LARP6	ACHN	La ribonucleoprotein domain family member 6	protein-coding
12.8904-4	chr13	31325718	31326217	+	0	NA	intron (NM_001204406, intron 3 of 5)	intron (NM_001204406, intron 3 of 5)	16322	NM_001629	241	Hs.507658	NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
0.550241-12	chr7	155436977	155437476	+	0	NA	promoter-TSS (NM_053043)	promoter-TSS (NM_053043)	23	NM_053043	155435	Hs.591815	NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
7.87812-2	chr22	20911518	20912017	+	0	NA	intron (NM_001003891, intron 5 of 17)	intron (NM_001003891, intron 5 of 17)	49432	NM_001293237	51586	Hs.517421	NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
2.37321-3	chr15	93198289	93198788	+	0	NA	intron (NM_207446, intron 1 of 2)	CpG	493	NM_207446	400451	Hs.27373	NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding
0.2365-6	chr9	469633	470132	+	0	NA	promoter-TSS (NM_001256876)	promoter-TSS (NM_001256876)	-412	NM_001256876	23189	Hs.306764	NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
0.209071-8	chr6	162343790	162344289	+	0	NA	intron (NM_013987, intron 5 of 10)	intron (NM_013987, intron 5 of 10)	452030	NR_134593	105378098	Hs.691066	NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
0.0305075-24	chr14	32724026	32724525	+	0	NA	Intergenic	Intergenic	-51800	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
3.0103-3	chr1	203221780	203222279	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-23169	NM_001270509	1118	Hs.201688	NM_003465	ENSG00000133063	CHIT1	CHI3|CHIT|CHITD	chitinase 1	protein-coding
3.40084-16	chr8	121823152	121823651	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	908	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
2.93282-10	chr3	117963556	117964055	+	0	NA	Intergenic	L2c|LINE|L2	-396810	NR_135573	101926968	Hs.518185	NR_135573		LOC101926968	-	uncharacterized LOC101926968	ncRNA
0.0217692-16	chr12	120703482	120703981	+	0	NA	promoter-TSS (NM_002859)	promoter-TSS (NM_002859)	-157	NM_002859	5829	Hs.446336	NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
0.888424-35	chr2	174219468	174219967	+	0	NA	intron (NM_145810, intron 1 of 8)	CpG	156	NM_145810	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
18.3565-2	chr2	224425433	224425932	+	0	NA	Intergenic	Intergenic	41535	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
1.85087-3	chr12	56551821	56552320	+	0	NA	promoter-TSS (NM_021019)	promoter-TSS (NM_021019)	25	NM_021019	4637	Hs.632717	NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
27.9317-2	chr13	28099551	28100050	+	0	NA	Intergenic	Intergenic	-75061	NM_001166263	219402	Hs.534582	NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
3.20572-7	chr18	33530200	33530699	+	0	NA	Intergenic	CpG	-16344	NR_037497	100500864		NR_037497	ENSG00000265641	MIR3929	-	microRNA 3929	ncRNA
0.0568285-18	chr10	70359075	70359574	+	0	NA	intron (NM_030625, intron 2 of 11)	intron (NM_030625, intron 2 of 11)	39207	NM_030625	80312	Hs.258855	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
0.0130484-57	chr18	11614477	11614976	+	0	NA	Intergenic	SVA_A|Other|Other	5169	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
0.809219-4	chr11	73490449	73490948	+	0	NA	Intergenic	CpG	-8219	NM_016055	51642	Hs.503239	NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
6.19789-2	chr10	135137876	135138375	+	0	NA	TTS (NM_001321617)	TTS (NM_001321617)	-12284	NR_046330	10844	Hs.523370	NM_006659	ENSG00000130640	TUBGCP2	GCP-2|GCP2|Grip103|SPBC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex associated protein 2	protein-coding
1.74574-10	chr3	133518606	133519105	+	0	NA	intron (NM_021203, intron 1 of 7)	intron (NM_021203, intron 1 of 7)	15978	NM_021203	58477	Hs.12152	NM_021203	ENSG00000144867	SRPRB	APMCF1	SRP receptor beta subunit	protein-coding
21.9518	chr2	122903043	122903542	+	0	NA	Intergenic	Intergenic	390171	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
0.899095-9	chr3	173753194	173753693	+	0	NA	intron (NM_014932, intron 4 of 6)	X3_LINE|LINE|RTE-BovB	-114857	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
2.18245-2	chr7	31066721	31067220	+	0	NA	Intergenic	Intergenic	-25106	NM_001199635	117	Hs.377783	NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	ADCYAP receptor type I	protein-coding
11.6558-3	chr12	125683213	125683712	+	0	NA	Intergenic	Intergenic	-127700	NM_052907	114795	Hs.524838	NM_052907	ENSG00000139364	TMEM132B	-	transmembrane protein 132B	protein-coding
14.828-5	chr6	90715090	90715589	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	111151	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
16.5561-2	chr1	218610558	218611057	+	0	NA	promoter-TSS (NR_031644).2	promoter-TSS (NR_031644).2	-168	NR_031644	100302159		NR_031644	ENSG00000221436	MIR548F3	MIR548F-3|MIRN548F3|hsa-mir-548f-3	microRNA 548f-3	ncRNA
3.77786	chr16	70098627	70099126	+	0	NA	intron (NR_003610, intron 1 of 25)	intron (NR_003610, intron 1 of 25)	975	NR_003610	283970	Hs.513695	NM_199134	ENSG00000196696	PDXDC2P	NPIP|PDXDC2	pyridoxal dependent decarboxylase domain containing 2, pseudogene	pseudo
1.33122-28	chr2	232402892	232403391	+	0	NA	Intergenic	SVA_A|Other|Other	-7959	NM_006056	10316	Hs.471619	NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
4.22508-8	chr6	36646918	36647417	+	0	NA	promoter-TSS (NR_144384)	promoter-TSS (NR_144384)	680	NM_001220778	1026	Hs.370771	NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
14.9485-3	chr13	54333151	54333650	+	0	NA	Intergenic	Intergenic	-56154	NR_047488	100861552	Hs.224691	NR_047488	ENSG00000261517	LINC00558	-	long intergenic non-protein coding RNA 558	ncRNA
4.29457-6	chr4_gl000193_random	88980	89479	+	0	NA	promoter-TSS (NR_038377)	promoter-TSS (NR_038377)	-854	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
0.118872-38	chr2	32778853	32779352	+	0	NA	intron (NM_016252, intron 65 of 73)	intron (NM_016252, intron 65 of 73)	20783	NR_125793	103752586	Hs.666092	NR_125793	ENSG00000279897	BIRC6-AS2	linc-birc6|megamind	BIRC6 antisense RNA 2	ncRNA
0.0744648-18	chr4	162443110	162443609	+	0	NA	intron (NM_020116, intron 10 of 15)	intron (NM_020116, intron 10 of 15)	-500526	NR_125888	101928052	Hs.647993	NR_125888	ENSG00000249419	LOC101928052	-	uncharacterized LOC101928052	ncRNA
0.186345-12	chr3	101133009	101133508	+	0	NA	intron (NM_001282801, intron 4 of 22)	intron (NM_001282801, intron 4 of 22)	-93839	NM_016247	50939	Hs.209249	NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
1.50581-17	chr5	14364624	14365123	+	0	NA	non-coding (NR_134469, exon 15 of 57)	non-coding (NR_134469, exon 15 of 57)	-217018	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding
0.680339-15	chr8	143420884	143421383	+	0	NA	intron (NM_001291931, intron 2 of 10)	intron (NM_001291931, intron 2 of 10)	63477	NM_001291931	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
2.31362-3	chr12	6812826	6813325	+	0	NA	Intergenic	Intergenic	-3066	NM_153685	196500	Hs.44067	NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
0.520764	chr1	10784193	10784692	+	0	NA	intron (NM_017766, intron 2 of 15)	intron (NM_017766, intron 2 of 15)	72291	NM_017766	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
0.798767-21	chr3	99472085	99472584	+	0	NA	intron (NM_001850, intron 3 of 4)	intron (NM_001850, intron 3 of 4)	-64344	NM_032359	84319	Hs.581320	NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog (yeast)	protein-coding
3.1158-6	chr2	54824368	54824867	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	39086	NM_178313	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
25.0169	chr5	123906202	123906701	+	0	NA	Intergenic	Intergenic	-132238	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
0.76756-13	chr19	17580248	17580747	+	0	NA	promoter-TSS (NM_198580)	promoter-TSS (NM_198580)	-756	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
0.118872-3	chr6	17719807	17720306	+	0	NA	Intergenic	Intergenic	12782	NR_134618	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA
0.574959-7	chr1	101992318	101992817	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	203174	NR_126402	104355286	Hs.568671	NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
7.37549-6	chr12	3372361	3372860	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	-117905	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
5.96879-9	chr2	148106339	148106838	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-495498	NM_001278580	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
1.72631-3	chr14	19925102	19925601	+	0	NA	promoter-TSS (NR_122111)	promoter-TSS (NR_122111)	-17	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
20.6651	chr9	95485354	95485853	+	0	NA	intron (NM_015250, intron 2 of 7)	L1MB8|LINE|L1	41480	NM_015250	23299	Hs.436939	NM_015250	ENSG00000185963	BICD2	SMALED2|bA526D8.1	BICD cargo adaptor 2	protein-coding
6.27088-4	chr20	2998853	2999352	+	0	NA	intron (NM_002836, intron 17 of 27)	SVA_D|Other|Other	-25166	NM_001310220	2797	Hs.129715	NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
2.89883-14	chr1	105534232	105534731	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	627076	NR_125955	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
2.1467-2	chr7	100434882	100435381	+	0	NA	Intergenic	CpG	-9988	NM_004444	2050	Hs.437008	NM_004444	ENSG00000196411	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
0.0524306-21	chr3	56835738	56836237	+	0	NA	promoter-TSS (NM_019555)	promoter-TSS (NM_019555)	8	NM_019555	50650	Hs.476402	NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
15.8336-4	chr10	122357810	122358309	+	0	NA	non-coding (NR_103717, exon 1 of 1)	non-coding (NR_103717, exon 1 of 1)	598	NR_103717	404216	Hs.196578	NM_001012711	ENSG00000177234	LINC01561	C10orf85	long intergenic non-protein coding RNA 1561	ncRNA
0.624821-11	chr7	105925542	105926041	+	0	NA	promoter-TSS (NM_005746)	promoter-TSS (NM_005746)	-153	NM_005746	10135	Hs.489615	NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
1.77832-8	chr14	77564749	77565248	+	0	NA	intron (NM_033426, intron 1 of 3)	intron (NM_033426, intron 1 of 3)	420	NM_033426	85457	Hs.709066	NM_033426	ENSG00000198894	CIPC	KIAA1737	CLOCK interacting pacemaker	protein-coding
11.2901	chr22	40406050	40406549	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	15346	NM_138435	113828	Hs.197680	NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
15.4668-3	chr5	29478509	29479008	+	0	NA	Intergenic	MER61D|LTR|ERV1	-82675	NR_104628	101929681	Hs.549659	NR_104628		LINC02064	-	long intergenic non-protein coding RNA 2064	ncRNA
6.28932-15	chr14	100037749	100038248	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	32729	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
0.00434512-47	chr1	45805806	45806305	+	0	NA	promoter-TSS (NM_001048174)	promoter-TSS (NM_001048174)	87	NM_001293190	4595	Hs.271353	NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
4.81486-7	chr11	6624603	6625102	+	0	NA	promoter-TSS (NM_015324)	promoter-TSS (NM_015324)	28	NM_015324	23378	Hs.652255	NM_015324	ENSG00000132275	RRP8	KIAA0409|NML	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding
3.36299-6	chr1	155023224	155023723	+	0	NA	promoter-TSS (NR_048577)	promoter-TSS (NR_048577)	168	NR_040772	100505666	Hs.657533	NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
0.996329-13	chr19	18872877	18873376	+	0	NA	intron (NM_001098482, intron 9 of 14)	CpG	28988	NM_000095	1311	Hs.1584	NM_000095	ENSG00000105664	COMP	EDM1|EPD1|MED|PSACH|THBS5|TSP5	cartilage oligomeric matrix protein	protein-coding
0.305841-23	chr5	10695105	10695604	+	0	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	66033	NM_004394	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
0.496351-5	chr20	49306301	49306800	+	0	NA	intron (NM_001290268, intron 1 of 21)	intron (NM_001290268, intron 1 of 21)	1517	NM_001290268	140876	Hs.372578	NM_080829	ENSG00000042062	FAM65C	C20orf175|C20orf176	family with sequence similarity 65 member C	protein-coding
0.0833099-51	chr1	47924874	47925373	+	0	NA	Intergenic	Intergenic	-22134	NR_126355	102724077	Hs.159718	NR_126355		LINC01389	-	long intergenic non-protein coding RNA 1389	ncRNA
5.25784-14	chr17	63480858	63481357	+	0	NA	Intergenic	SVA_D|Other|Other	27448	NR_131984	105827617		NR_131984	ENSG00000263520	CRAT40	-	cervical cancer-associated transcript 40	ncRNA
1.72631-16	chr7	35841131	35841630	+	0	NA	intron (NM_001788, intron 1 of 12)	CpG	784	NM_001242956	989	Hs.191346	NM_001788	ENSG00000122545	SEPT7	CDC10|CDC3|NBLA02942|SEPT7A	septin 7	protein-coding
1.95861-9	chr5	156575803	156576302	+	0	NA	Intergenic	Intergenic	-6131	NM_004270	9443	Hs.279902	NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
19.7469-2	chr6	90869712	90870211	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	136666	NM_001170794	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
6.23423-6	chr11	131333493	131333992	+	0	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	77019	NR_110140	101929653	Hs.559159	NR_110140	ENSG00000237654	LOC101929653	-	uncharacterized LOC101929653	ncRNA
0.0348833-9	chr14	87232746	87233245	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-139127	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
9.46922-4	chr7	44434642	44435141	+	0	NA	intron (NM_015332, intron 4 of 5)	intron (NM_015332, intron 4 of 5)	-69661	NM_172080	816	Hs.351887	NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB	calcium/calmodulin dependent protein kinase II beta	protein-coding
2.97569-5	chr1	112491475	112491974	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	39445	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA
8.96196-7	chr4	126444055	126444554	+	0	NA	Intergenic	LTR1B|LTR|ERV1	15890	NR_031746	100302267		NR_031746	ENSG00000283550	MIR2054	hsa-mir-2054	microRNA 2054	ncRNA
0.414361-15	chr5	76476317	76476816	+	0	NA	Intergenic	CpG	-30140	NM_001029853	8622	Hs.584830	NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
1.19186-4	chr21	44930496	44930995	+	0	NA	Intergenic	Intergenic	-31331	NR_136540	102724354	Hs.592161	NR_136540	ENSG00000280191	LINC01669	-	long intergenic non-protein coding RNA 1669	ncRNA
3.04518-6	chr8	24960924	24961423	+	0	NA	Intergenic	SVA_B|Other|Other	-81065	NM_001322810	80005	Hs.195403	NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
0.0877392-17	chr21	28215134	28215633	+	0	NA	intron (NM_006988, intron 1 of 8)	intron (NM_006988, intron 1 of 8)	2345	NM_006988	9510	Hs.643357	NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
3.37242-8	chr14	56957897	56958396	+	0	NA	Intergenic	Intergenic	-22903	NR_135241	101927690	Hs.385477	NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
19.4692-5	chr1	177826306	177826805	+	0	NA	Intergenic	Intergenic	112495	NM_033127	89866	Hs.149540	NM_033127	ENSG00000120341	SEC16B	LZTR2|PGPR-p117|RGPR|SEC16S	SEC16 homolog B, endoplasmic reticulum export factor	protein-coding
1.25518-9	chr4	110842640	110843139	+	0	NA	intron (NM_001963, intron 1 of 23)	intron (NM_001963, intron 1 of 23)	8849	NM_001178131	1950	Hs.419815	NM_001963	ENSG00000138798	EGF	HOMG4|URG	epidermal growth factor	protein-coding
7.69551-9	chr7	2353936	2354435	+	0	NA	promoter-TSS (NM_013321)	promoter-TSS (NM_013321)	-75	NM_013321	29886	Hs.584900	NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
2.77366	chr4	38162944	38163443	+	0	NA	Intergenic	Intergenic	41618	NM_001253915	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
0.920515-21	chr13	99803731	99804230	+	0	NA	Intergenic	Intergenic	-48699	NM_001144072	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
1.33122-22	chr6	85677036	85677535	+	0	NA	Intergenic	HERVI-int|LTR|ERV1	-203331	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	CAKUT2	T-box 18	protein-coding
30.7263	chr4	56716127	56716626	+	0	NA	Intergenic	LTR1|LTR|ERV1	-3440	NM_018261	55763	Hs.269665	NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
3.6251-8	chr4	100336876	100337375	+	0	NA	intron (NM_001166504, intron 7 of 8)	L1PA8|LINE|L1	19166	NM_001166504	131	Hs.389	NM_000673	ENSG00000196344	ADH7	ADH4	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding
1.49967-22	chr5	139493338	139493837	+	0	NA	promoter-TSS (NM_005859)	promoter-TSS (NM_005859)	-121	NM_005859	5813	Hs.443121	NM_005859	ENSG00000185129	PURA	MRD31|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding
10-9	chr1	109059993	109060492	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-42729	NM_001010883	284611	Hs.200230	NM_001010883	ENSG00000162636	FAM102B	SYM-3B	family with sequence similarity 102 member B	protein-coding
7.32828-9	chr2	54801557	54802056	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	16275	NM_178313	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
3.41989	chr11	36310757	36311256	+	0	NA	promoter-TSS (NM_001101653)	promoter-TSS (NM_001101653)	-7	NM_001101653	29099	Hs.279836	NM_014186	ENSG00000110442	COMMD9	HSPC166	COMM domain containing 9	protein-coding
23.9903	chr7	91744941	91745440	+	0	NA	intron (NM_000786, intron 9 of 9)	L3|LINE|CR1	18650	NM_000786	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
4.29457-4	chr2	74287653	74288152	+	0	NA	intron (NM_001287491, intron 3 of 10)	SVA_D|Other|Other	74371	NM_001287491	200424	Hs.516107	NM_001287491	ENSG00000187605	TET3	hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
1.25518-5	chr1	17297702	17298201	+	0	NA	intron (NM_014675, intron 35 of 36)	intron (NM_014675, intron 35 of 36)	9222	NM_001135248	4237	Hs.389137	NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar associated protein 2	protein-coding
0.305841-9	chr14	100040297	100040796	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	30181	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
6.86133	chr10	57659277	57659776	+	0	NA	Intergenic	L1PA3|LINE|L1	300776	NM_001190478	100463289	Hs.727204	NM_001190478	ENSG00000249860	MTRNR2L5	HN5	MT-RNR2-like 5	protein-coding
4.76254-11	chr4	102268626	102269125	+	0	NA	promoter-TSS (NM_000944)	promoter-TSS (NM_000944)	-59	NR_033874	90024	Hs.534513	NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
2.38072-18	chr10	60936109	60936608	+	0	NA	promoter-TSS (NM_001143774)	promoter-TSS (NM_001143774)	10	NM_032439	84457	Hs.499704	NM_032439	ENSG00000165443	PHYHIPL	-	phytanoyl-CoA 2-hydroxylase interacting protein like	protein-coding
9.24453-17	chr19	3132872	3133371	+	0	NA	Intergenic	L2b|LINE|L2	-2909	NM_002068	2769	Hs.73797	NM_002068	ENSG00000060558	GNA15	GNA16	G protein subunit alpha 15	protein-coding
6.47817-4	chr1	66153332	66153831	+	0	NA	Intergenic	Intergenic	-104612	NM_001037341	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
0.496351-56	chr6	17706176	17706675	+	0	NA	promoter-TSS (NR_134618)	promoter-TSS (NR_134618)	64	NR_134616	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA
0.798767-8	chr12	113678918	113679417	+	0	NA	intron (NM_017901, intron 2 of 27)	intron (NM_017901, intron 2 of 27)	-2899	NM_001301214	53373	Hs.524763	NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
0.550241-15	chr17	18266632	18267131	+	0	NA	promoter-TSS (NM_001281786)	promoter-TSS (NM_001281786)	-4	NM_004169	6470	Hs.513987	NM_004169	ENSG00000176974	SHMT1	CSHMT|SHMT	serine hydroxymethyltransferase 1	protein-coding
0.34328-30	chr10	101088889	101089388	+	0	NA	non-coding (NR_144311, exon 1 of 11)	non-coding (NR_144311, exon 1 of 11)	282	NM_001345887	26507	Hs.274579	NM_020348	ENSG00000119946	CNNM1	ACDP1|CLP-1	cyclin and CBS domain divalent metal cation transport mediator 1	protein-coding
0.798767-2	chr7	6312526	6313025	+	0	NA	promoter-TSS (NM_004227)	promoter-TSS (NM_004227)	-533	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
2.21126-4	chr11	61497317	61497816	+	0	NA	intron (NM_006133, intron 8 of 19)	intron (NM_006133, intron 8 of 19)	-22543	NM_001127392	745	Hs.473109	NM_013279	ENSG00000124920	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
2.09715-10	chr14	100765811	100766310	+	0	NA	intron (NM_001039355, intron 1 of 3)	MIR|SINE|MIR	6824	NM_001291814	123096	Hs.578109	NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
1.43271-32	chr17	48556710	48557209	+	0	NA	intron (NR_130911, intron 1 of 4)	intron (NR_130911, intron 1 of 4)	798	NM_018346	55316	Hs.8033	NM_018346	ENSG00000136444	RSAD1	-	radical S-adenosyl methionine domain containing 1	protein-coding
0.296531-87	chr15	83104428	83104927	+	0	NA	intron (NM_198181, intron 7 of 8).2	intron (NM_198181, intron 7 of 8).2	5967	NM_198181	440295	Hs.498322	NM_198181	ENSG00000197978	GOLGA6L9	GOLGA6L20	golgin A6 family-like 9	protein-coding
2.81498-8	chr4	110333111	110333610	+	0	NA	Intergenic	Intergenic	-21511	NM_001042734	10427	Hs.292472	NM_006323	ENSG00000138802	SEC24B	SEC24	SEC24 homolog B, COPII coat complex component	protein-coding
0.609802-3	chr3	75343261	75343760	+	0	NA	Intergenic	Intergenic	79883	NR_049831	100846999		NR_049831	ENSG00000266780	MIR4444-2	-	microRNA 4444-2	ncRNA
3.9794-21	chr1	205244211	205244710	+	0	NA	Intergenic	Intergenic	18135	NM_001331034	9911	Hs.6360	NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
3.17855-2	chr1	227953829	227954328	+	0	NA	intron (NM_001323934, intron 3 of 4)	intron (NM_001323934, intron 3 of 4)	30682	NM_001323934	116841	Hs.325081	NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
5.76754-2	chr7	155089118	155089617	+	0	NA	promoter-TSS (NM_001346590)	promoter-TSS (NM_001346590)	-115	NM_001346590	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
1.32533-5	chr9	131545674	131546173	+	0	NA	Intergenic	L1MB4|LINE|L1	-3563	NM_018201	54662	Hs.3376	NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
0.856568-10	chr7	149474147	149474646	+	0	NA	exon (NM_198455, exon 4 of 110)	exon (NM_198455, exon 4 of 110)	1265	NM_198455	23145	Hs.632022	NM_198455	ENSG00000197558	SSPO	-	SCO-spondin	protein-coding
1.37272-16	chr1	94058457	94058956	+	0	NA	intron (NR_034091, intron 1 of 3)	intron (NR_034091, intron 1 of 3)	1181	NR_034091	100129046	Hs.729244	NR_034091		LOC100129046	-	uncharacterized LOC100129046	ncRNA
1.42065-17	chr16	83986949	83987448	+	0	NA	intron (NM_182981, intron 1 of 5)	intron (NM_182981, intron 1 of 5)	371	NM_182981	29948	Hs.128055	NM_013370	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
2.62013-10	chr15	70861465	70861964	+	0	NA	Intergenic	MER68|LTR|ERVL	17231	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA
0.920515-3	chrX	153193744	153194243	+	0	NA	Intergenic	CpG	-2279	NM_001666	393	Hs.701324	NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
0.599818-3	chr12	5543585	5544084	+	0	NA	intron (NM_001102654, intron 1 of 1)	intron (NM_001102654, intron 1 of 1)	2554	NM_001102654	4908	Hs.99171	NM_002527	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
0.241089-29	chr21	35734058	35734557	+	0	NA	Intergenic	Intergenic	-2016	NM_172201	9992	Hs.551521	NM_172201	ENSG00000159197	KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel subfamily E regulatory subunit 2	protein-coding
10.3245	chr11	3253049	3253548	+	0	NA	intron (NM_001039165, intron 1 of 1)	intron (NM_001039165, intron 1 of 1)	318	NM_001039165	116534	Hs.745512	NM_001039165	ENSG00000184350	MRGPRE	GPR167|MGRF|MRGE	MAS related GPR family member E	protein-coding
1.20904-5	chr19	36605558	36606057	+	0	NA	promoter-TSS (NM_001281)	promoter-TSS (NM_001281)	-81	NM_001281	1155	Hs.31053	NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
31.8376-2	chr18	69839040	69839539	+	0	NA	Intergenic	Intergenic	372434	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
0.835461-3	chr2	69171126	69171625	+	0	NA	TTS (NM_182536)	TTS (NM_182536)	8727	NM_182536	200504	Hs.16757	NM_182536	ENSG00000183607	GKN2	BRICD1B|GDDR|PRO813|TFIZ1|VLTI465	gastrokine 2	protein-coding
0.352691-6	chrX	57021746	57022245	+	0	NA	promoter-TSS (NR_027139)	promoter-TSS (NR_027139)	-7	NM_001010862	169981	Hs.522672	NM_001010862	ENSG00000204271	SPIN3	SPIN-3|TDRD27|bA445O16.1	spindlin family member 3	protein-coding
0.685421-7	chr6	33719643	33720413	+	0	NA	Intergenic	Intergenic	-5266	NM_054111	117283	Hs.17253	NM_054111	ENSG00000161896	IP6K3	IHPK3|INSP6K3	inositol hexakisphosphate kinase 3	protein-coding
2.80669-15	chr15	28631676	28632175	+	0	NA	intron (NR_033353, intron 12 of 17).2	intron (NR_033353, intron 12 of 17).2	8141	NR_033353	283768	Hs.169639	NM_001012420	ENSG00000183629	GOLGA8G	-	golgin A8 family member G	pseudo
0.177288-5	chr1	226624562	226625061	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-29010	NM_001618	142	Hs.177766	NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
1.41463-18	chr5	691053	691552	+	0	NA	intron (NM_007030, intron 1 of 3)	CpG	2208	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
1.39662-17	chr3	123304249	123304748	+	0	NA	promoter-TSS (NM_001329783)	promoter-TSS (NM_001329783)	138	NR_038266	100506826	Hs.556600	NR_038266	ENSG00000239523	MYLK-AS1	-	MYLK antisense RNA 1	ncRNA
1.53045-5	chr1	165599565	165600064	+	0	NA	promoter-TSS (NM_004528)	promoter-TSS (NM_004528)	-296	NM_004528	4259	Hs.191734	NM_004528	ENSG00000143198	MGST3	GST-III	microsomal glutathione S-transferase 3	protein-coding
3.63512-2	chr7	46202792	46203291	+	0	NA	Intergenic	L2b|LINE|L2	-242170	NM_001013398	3486	Hs.450230	NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP3	insulin like growth factor binding protein 3	protein-coding
0.366845-19	chr16	57079699	57080198	+	0	NA	intron (NM_001330552, intron 21 of 47)	intron (NM_001330552, intron 21 of 47)	28962	NM_032206	84166	Hs.528836	NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
4.08935-12	chr17	905824	906323	+	0	NA	TTS (NM_001322840)	TTS (NM_001322840)	5940	NM_013337	29928	Hs.745034	NM_013337	ENSG00000177370	TIMM22	TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
2.84833-14	chr10	14050318	14050817	+	0	NA	promoter-TSS (NM_001318336)	promoter-TSS (NM_001318336)	-35	NM_001318336	55691	Hs.330463	NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
4.78862-3	chr10	85939566	85940065	+	0	NA	intron (NM_207373, intron 2 of 2)	SVA_B|Other|Other	6261	NM_207373	387695	Hs.298713	NM_207373	ENSG00000188373	C10orf99	AP-57|CSBF|UNQ1833	chromosome 10 open reading frame 99	protein-coding
21.0513-2	chr8	79524969	79525468	+	0	NA	Intergenic	Intergenic	-53064	NM_016010	51101	Hs.271876	NM_016010	ENSG00000104427	ZC2HC1A	C8orf70|CGI-62|FAM164A	zinc finger C2HC-type containing 1A	protein-coding
17.9588-4	chr13	79311575	79312074	+	0	NA	Intergenic	Intergenic	-78510	NM_024546	79596	Hs.567576	NM_024546	ENSG00000152193	RNF219	C13orf7	ring finger protein 219	protein-coding
1.37869-40	chr5	565696	566195	+	0	NA	Intergenic	CpG	-29948	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
12.5806-4	chr2	23765445	23765944	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	157396	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
1.52427-23	chr2	203442208	203442707	+	0	NA	Intergenic	AluJb|SINE|Alu	-57444	NM_173511	150864	Hs.471130	NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
2.98432	chr4	141221379	141221878	+	0	NA	intron (NR_033939, intron 2 of 4)	intron (NR_033939, intron 2 of 4)	-42969	NM_001153446	60592	Hs.480815	NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
2.50264-5	chr14	73649976	73650475	+	0	NA	intron (NM_007318, intron 5 of 11)	SVA_D|Other|Other	47082	NM_000021	5663	Hs.3260	NM_000021	ENSG00000080815	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
2.09715	chr16	30886447	30886946	+	0	NA	promoter-TSS (NR_039744)	promoter-TSS (NR_039744)	-52	NR_039744	100616231		NR_039744	ENSG00000265991	MIR4519	-	microRNA 4519	ncRNA
0.0436481-13	chr21	47648332	47648831	+	0	NA	promoter-TSS (NR_110565)	promoter-TSS (NR_110565)	157	NM_002340	4047	Hs.596543	NM_002340	ENSG00000160285	LSS	CTRCT44|OSC	lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	protein-coding
20.6651-2	chr1	212661848	212662347	+	0	NA	Intergenic	Intergenic	55868	NR_026598	29937	Hs.461787	NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
0.731433-16	chr12	42311573	42312072	+	0	NA	Intergenic	Intergenic	153831	NR_135040	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA
1.85087-18	chr2	134051434	134051933	+	0	NA	intron (NM_207481, intron 4 of 17)	intron (NM_207481, intron 4 of 17)	27916	NR_110294	101928161	Hs.661917	NR_110294	ENSG00000226953	LOC101928161	-	uncharacterized LOC101928161	ncRNA
1.59894-16	chr16	56345564	56346063	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	66381	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
0.409586-27	chr13	48612121	48612620	+	0	NA	intron (NM_018283, intron 1 of 2)	intron (NM_018283, intron 1 of 2)	667	NR_136687	55270	Hs.144407	NM_018283	ENSG00000136159	NUDT15	MTH2|NUDT15D	nudix hydrolase 15	protein-coding
1.02373-3	chr17	40284971	40285470	+	0	NA	intron (NM_001252039, intron 1 of 6)	intron (NM_001252039, intron 1 of 6)	10464	NM_033194	94086	Hs.620611	NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
0.296531-19	chr16	699008	699507	+	0	NA	promoter-TSS (NM_145294)	promoter-TSS (NM_145294)	56	NR_135177	105371038		NR_135177		LOC105371038	-	uncharacterized LOC105371038	ncRNA
1.82435-8	chr17	16472268	16472767	+	0	NA	promoter-TSS (NM_020653)	promoter-TSS (NM_020653)	9	NM_001346171	57336	Hs.99724	NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
0.227338-7	chr6	139571607	139572106	+	0	NA	intron (NM_153235, intron 7 of 9)	intron (NM_153235, intron 7 of 9)	41352	NM_153235	167838	Hs.535820	NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
3.07153-4	chr4	111118650	111119149	+	0	NA	intron (NM_001130721, intron 2 of 4)	intron (NM_001130721, intron 2 of 4)	872	NM_001130721	79071	Hs.412939	NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
10.1368-2	chr3	9889881	9890380	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4428	NM_001142547	285367	Hs.33719	NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridylate synthase domain containing 3	protein-coding
32.2915-2	chr9	107616705	107617204	+	0	NA	intron (NM_005502, intron 7 of 49)	intron (NM_005502, intron 7 of 49)	73573	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
0.296531-113	chr9_gl000199_random	44219	44718	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.0174066-4	chr17	79924575	79925074	+	0	NA	Intergenic	Intergenic	-5767	NM_178493	147111	Hs.106137	NM_178493	ENSG00000185269	NOTUM	hNOTUM	NOTUM, palmitoleoyl-protein carboxylesterase	protein-coding
47.0774	chr7	87085508	87086007	+	0	NA	intron (NM_000443, intron 4 of 27)	MSTB|LTR|ERVL-MaLR	19262	NM_018850	5244	Hs.654403	NM_000443	ENSG00000005471	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP binding cassette subfamily B member 4	protein-coding
3.1158	chr5	55553473	55553972	+	0	NA	Intergenic	SVA_B|Other|Other	-24536	NM_024669	79722	Hs.436214	NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
1.37869-10	chr7	75874083	75874582	+	0	NA	intron (NM_001291831, intron 2 of 16)	L2b|LINE|L2	43121	NM_001110199	222183	Hs.511025	NM_001039212	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
94.828	chr14	23184401	23184900	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-51081	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	OXA1L, mitochondrial inner membrane protein	protein-coding
1.43876-2	chr5	81573850	81574349	+	0	NA	intron (NM_001025, intron 1 of 3)	CpG	136	NM_001025	6228	Hs.527193	NM_001025	ENSG00000186468	RPS23	S23	ribosomal protein S23	protein-coding
5.8838-2	chr7	1032707	1033206	+	0	NA	Intergenic	Intergenic	10121	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
13.7779-2	chr1	206878435	206878934	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	20319	NM_032960	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
3.63512-19	chr22	17639958	17640939	+	0	NA	promoter-TSS (NM_033070)	promoter-TSS (NM_033070)	169	NR_024483	100130717	Hs.660066	NR_024482	ENSG00000185837	CECR5-AS1	CECR4|NCRNA00017	CECR5 antisense RNA 1	ncRNA
9.62574-13	chr2	180845681	180846180	+	0	NA	intron (NM_020943, intron 5 of 19)	MER58A|DNA|hAT-Charlie	25850	NM_020943	57703	Hs.311363	NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
16.038-4	chr5	95852924	95853423	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-84188	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
8.50781	chr7	116151502	116152001	+	0	NA	Intergenic	Intergenic	11653	NM_001206748	858	Hs.212332	NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding
0.634863-5	chr2	110841254	110841753	+	0	NA	TTS (NM_005434)	TTS (NM_005434)	2597	NR_049830	100847033		NR_049830	ENSG00000263881	MIR4436B2	-	microRNA 4436b-2	ncRNA
0.11441-13	chr9	132175824	132176323	+	0	NA	Intergenic	CpG	-74866	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
1.12383-9	chr3	155100192	155100691	+	0	NA	Intergenic	Intergenic	-88952	NR_037902	100507537	Hs.518341	NR_037902	ENSG00000240045	LOC100507537	-	uncharacterized LOC100507537	ncRNA
1.64944-16	chr1	4457217	4457716	+	0	NA	Intergenic	Intergenic	-14645	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
4.01209-19	chr4	101111389	101111888	+	0	NA	promoter-TSS (NM_145244)	promoter-TSS (NM_145244)	17	NM_145244	115265	Hs.480378	NM_145244	ENSG00000145358	DDIT4L	REDD2|Rtp801L	DNA damage inducible transcript 4 like	protein-coding
1.28427-7	chr4	141217437	141217936	+	0	NA	intron (NR_033939, intron 2 of 4)	intron (NR_033939, intron 2 of 4)	39246	NM_032547	60592	Hs.480815	NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
28.6328	chr4	99665965	99666464	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-86402	NM_005723	10098	Hs.118118	NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
12.4489-6	chr7	86873	87372	+	0	NA	Intergenic	Intergenic	62316	NR_134325	102723672	Hs.605204	NR_134325		LOC102723672	-	uncharacterized LOC102723672	ncRNA
1.58641-3	chr20	30015749	30016248	+	0	NA	intron (NR_045677, intron 2 of 2)	SVA_D|Other|Other	985	NR_045677	245935	Hs.526624	NR_002577	ENSG00000204547	DEFB122	DEFB-22|DEFB122P|DEFB22	defensin beta 122 (pseudogene)	pseudo
18.8606-4	chr7	151092781	151093280	+	0	NA	exon (NM_001284260, exon 3 of 6)	exon (NM_001284260, exon 3 of 6)	-13217	NR_034013	100131176	Hs.659231	NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
0.00869459-18	chr12	3471829	3472328	+	0	NA	Intergenic	Intergenic	-18437	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
5.24329-2	chr2	114735455	114735954	+	0	NA	non-coding (NR_034130, exon 1 of 1)	non-coding (NR_034130, exon 1 of 1)	-1442	NR_034128	440900	Hs.662205	NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
0.301184-27	chrX	14069473	14069972	+	0	NA	Intergenic	Intergenic	-21687	NM_001042479	54960	Hs.592237	NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
9.50782-22	chr7	30543894	30544393	+	0	NA	intron (NM_024051, intron 1 of 3)	CpG	314	NM_024051	79017	Hs.530024	NM_024051	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
1.05684-11	chr9	132906897	132907396	+	0	NA	promoter-TSS (NR_135124)	promoter-TSS (NR_135124)	-648	NR_135124	401554	Hs.522437	NR_135124	ENSG00000196979	LOC401554	-	uncharacterized LOC401554	ncRNA
1.27844-9	chr1	44351099	44351598	+	0	NA	intron (NR_073018, intron 6 of 10)	intron (NR_073018, intron 6 of 10)	47054	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
1.03474-8	chr6	82783091	82783590	+	0	NA	Intergenic	Intergenic	174131	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
2.98432-17	chr12	1913576	1914075	+	0	NA	intron (NM_172364, intron 29 of 37)	MLT1J|LTR|ERVL-MaLR	-15608	NM_001163925	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
58.2974-2	chr13	66953019	66953518	+	0	NA	intron (NM_001318372, intron 4 of 4)	intron (NM_001318372, intron 4 of 4)	160886	NR_039853	100616205		NR_039853	ENSG00000263561	MIR4704	-	microRNA 4704	ncRNA
0.305841-27	chr5	174961035	174961534	+	0	NA	Intergenic	Intergenic	55783	NM_001322977	94081	Hs.369440	NM_022754	ENSG00000164466	SFXN1	TCC	sideroflexin 1	protein-coding
0.589858-5	chr18	30457171	30457670	+	0	NA	Intergenic	Intergenic	-104446	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
2.54925-19	chr2	25496086	25496585	+	0	NA	intron (NM_022552, intron 6 of 22)	intron (NM_022552, intron 6 of 22)	-21151	NM_153759	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
7.47147-17	chr1	42442842	42443341	+	0	NA	intron (NR_038261, intron 1 of 3)	(CCTG)n|Simple_repeat|Simple_repeat	58505	NR_038261	59269	Hs.403972	NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
38.5387	chr2	33760420	33760919	+	0	NA	intron (NM_015376, intron 10 of 16)	intron (NM_015376, intron 10 of 16)	21727	NM_015376	25780	Hs.143674	NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
3.07153	chr1	110727671	110728170	+	0	NA	intron (NM_001010898, intron 6 of 11)	MIR|SINE|MIR	24689	NR_046546	100873974	Hs.130515	NR_046546		KCNC4-AS1	-	KCNC4 antisense RNA 1 (head to head)	ncRNA
2.47952-7	chr11	2721141	2721640	+	0	NA	promoter-TSS (NR_002728)	promoter-TSS (NR_002728)	-162	NR_002728	10984	Hs.604823	NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)	ncRNA
5.62249	chr4	113928286	113928785	+	0	NA	intron (NM_001127493, intron 2 of 46)	intron (NM_001127493, intron 2 of 46)	-42250	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
20.8355	chr1	184898971	184899470	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	44498	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
0.599818-6	chr20	35904876	35905375	+	0	NA	Intergenic	Intergenic	-12926	NM_022077	63905	Hs.6126	NM_022077	ENSG00000101363	MANBAL	-	mannosidase beta like	protein-coding
8.60121-14	chr2	177022444	177022943	+	0	NA	Intergenic	Intergenic	-6112	NM_006898	3232	Hs.93574	NM_006898	ENSG00000128652	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
16.0906	chr19	20193175	20193674	+	0	NA	intron (NM_007138, intron 1 of 3)	LTR5_Hs|LTR|ERVK	4621	NM_007138	7643	Hs.55304	NM_007138	ENSG00000213988	ZNF90	HTF9	zinc finger protein 90	protein-coding
32.1325	chr2	202906794	202907293	+	0	NA	Intergenic	L2a|LINE|L2	7733	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
5.867-5	chr7	110402530	110403029	+	0	NA	intron (NM_001244606, intron 6 of 6)	intron (NM_001244606, intron 6 of 6)	-328283	NM_001099660	54674	Hs.3781	NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
14.2251-3	chr7	31380151	31380650	+	0	NA	5' UTR (NM_022728, exon 1 of 2)	5' UTR (NM_022728, exon 1 of 2)	138	NM_022728	63974	Hs.45152	NM_022728	ENSG00000164600	NEUROD6	Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2	neuronal differentiation 6	protein-coding
0.609802-11	chr5	179105087	179105586	+	0	NA	TTS (NM_001164444)	TTS (NM_001164444)	2639	NM_001164444	646019	Hs.535767	NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
0.268721-13	chr1	102461689	102462188	+	0	NA	intron (NM_001288823, intron 1 of 6)	intron (NM_001288823, intron 1 of 6)	852	NM_001288823	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
1.76526-10	chrX	73513120	73513619	+	0	NA	promoter-TSS (NR_028379)	promoter-TSS (NR_028379)	40	NR_028379	100302692	Hs.349570	NR_028379	ENSG00000230590	FTX	LINC00182|MIR374AHG|NCRNA00182	FTX transcript, XIST regulator (non-protein coding)	ncRNA
17.8781-8	chr1	229645249	229645748	+	0	NA	intron (NR_110630, intron 1 of 2)	intron (NR_110630, intron 1 of 2)	1321	NR_110630	101927478	Hs.229275	NR_110630		LOC101927478	-	uncharacterized LOC101927478	ncRNA
0.888424-7	chr8	55038538	55039037	+	0	NA	Intergenic	SVA_F|Other|Other	-8994	NM_014175	29088	Hs.18349	NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
0.268721-32	chr6	156511796	156512295	+	0	NA	Intergenic	L1MC4a|LINE|L1	244114	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
32.3284	chr1	53715100	53715599	+	0	NA	intron (NM_033300, intron 15 of 16)	L2c|LINE|L2	-11067	NM_002370	4116	Hs.421576	NM_002370	ENSG00000162385	MAGOH	MAGOH1|MAGOHA	mago homolog, exon junction complex core component	protein-coding
1.65579-4	chr12	50497524	50498023	+	0	NA	5' UTR (NM_001257199, exon 1 of 8)	5' UTR (NM_001257199, exon 1 of 8)	171	NM_001257199	2819	Hs.524418	NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
6.1261-5	chr2	138817578	138818077	+	0	NA	Intergenic	Intergenic	-41627	NR_135526	105373635		NR_135526	ENSG00000224231	LINC01832	-	long intergenic non-protein coding RNA 1832	ncRNA
6.7162-4	chr10	49514249	49514748	+	0	NA	promoter-TSS (NM_001278547)	promoter-TSS (NM_001278547)	-184	NM_001323325	5599	Hs.138211	NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
3.02771-5	chr1	38616962	38617461	+	0	NA	Intergenic	LTR16A|LTR|ERVL	62308	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
4.80172-12	chr2	218474592	218475091	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	146475	NR_026597	729582	Hs.572788	NR_026597		DIRC3	-	disrupted in renal carcinoma 3	ncRNA
1.33713-11	chr4	142053207	142053706	+	0	NA	intron (NM_020724, intron 1 of 6)	CpG	1160	NM_020724	57484	Hs.659104	NM_020724	ENSG00000170153	RNF150	-	ring finger protein 150	protein-coding
2.26214-11	chr2	205124768	205125267	+	0	NA	Intergenic	Intergenic	-285499	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
22.0901	chr1	85193272	85193771	+	0	NA	Intergenic	L1PA15|LINE|L1	-37281	NM_001166294	117178	Hs.22587	NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
0.118872-23	chr2	45241111	45241610	+	0	NA	Intergenic	CpG	-4818	NM_016932	10736	Hs.101937	NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
1.26098-16	chr1	117209371	117209870	+	0	NA	promoter-TSS (NM_001542)	promoter-TSS (NM_001542)	-42	NM_001542	3321	Hs.171057	NM_001542	ENSG00000143061	IGSF3	EWI-3|LCDD|V8	immunoglobulin superfamily member 3	protein-coding
2.11832-6	chr2	61847632	61848393	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-82594	NM_003400	7514	Hs.370770	NM_003400	ENSG00000082898	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
12.4718-5	chr18	71749623	71750122	+	0	NA	intron (NM_001142958, intron 8 of 9)	intron (NM_001142958, intron 8 of 9)	65127	NM_152676	201456	Hs.664011	NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
6.40165-4	chr7	55637527	55638026	+	0	NA	intron (NM_001321244, intron 1 of 5)	intron (NM_001321244, intron 1 of 5)	1785	NM_001321250	81552	Hs.488307	NM_030796	ENSG00000154978	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
0.101054-3	chr2	161797066	161797565	+	0	NA	Intergenic	Intergenic	-196151	NM_133484	10010	Hs.132257	NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
0.634863-12	chr11	62123037	62123536	+	0	NA	intron (NM_025080, intron 2 of 6)	SVA_D|Other|Other	18512	NM_001083926	80150	Hs.535326	NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase like 1	protein-coding
0.660068	chr15	82490265	82490764	+	0	NA	intron (NR_136410, intron 15 of 19)	intron (NR_136410, intron 15 of 19)	64355	NM_001322845	79631	Hs.459114	NM_024580	ENSG00000140598	EFL1	EFTUD1|FAM42A|HsT19294|RIA1	elongation factor like GTPase 1	protein-coding
4.80172-6	chr2	205356197	205356696	+	0	NA	Intergenic	Intergenic	-54070	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
7.61954-14	chr3	118219966	118220465	+	0	NA	Intergenic	Intergenic	-140400	NR_135573	101926968	Hs.518185	NR_135573		LOC101926968	-	uncharacterized LOC101926968	ncRNA
0.419142-45	chr16	30786576	30787075	+	0	NA	3' UTR (NM_001286572, exon 20 of 20)	3' UTR (NM_001286572, exon 20 of 20)	11715	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
23.0892-3	chr11	130498824	130499323	+	0	NA	Intergenic	Intergenic	-37557	NR_107019	102466873		NR_107019	ENSG00000274999	MIR8052	hsa-mir-8052	microRNA 8052	ncRNA
4.08935	chr7	82189631	82190130	+	0	NA	Intergenic	Intergenic	-116758	NM_001302890	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
0.34328-3	chr21	38592664	38593163	+	0	NA	non-coding (NR_026719, exon 3 of 3)	non-coding (NR_026719, exon 3 of 3)	12109	NR_026719	257203	Hs.505159	NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9 (non-protein coding)	ncRNA
0.496351-45	chr13	37332364	37332863	+	0	NA	Intergenic	Intergenic	-60726	NM_000538	5994	Hs.24422	NM_000538	ENSG00000133111	RFXAP	-	regulatory factor X associated protein	protein-coding
1.83759-7	chr4	17547294	17547793	+	0	NA	Intergenic	Intergenic	30755	NM_001079827	645104	Hs.631526	NM_001079827	ENSG00000249581	CLRN2	-	clarin 2	protein-coding
0.376307-16	chrX	55743817	55744316	+	0	NA	promoter-TSS (NM_006064)	promoter-TSS (NM_006064)	-44	NM_006064	10325	Hs.50282	NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
1.00727-17	chr19	45927183	45927682	+	0	NA	promoter-TSS (NM_001166049)	promoter-TSS (NM_001166049)	-255	NM_001166049	2067	Hs.435981	NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
28.3863-2	chr8	134091475	134091974	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	-19121	NM_006748	6503	Hs.75367	NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
6.17983-5	chr8	11421992	11422491	+	0	NA	TTS (NM_001715)	TTS (NM_001715)	-11803	NR_040035	83655	Hs.742430	NR_040035	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
7.54487-8	chr18	21977629	21978128	+	0	NA	promoter-TSS (NM_080597)	promoter-TSS (NM_080597)	-45	NM_080597	114876	Hs.370725	NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
15.3165-2	chr4	11456863	11457362	+	0	NA	Intergenic	Intergenic	-26575	NM_005114	9957	Hs.507348	NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
8.60121-8	chr6	42420668	42421167	+	0	NA	Intergenic	CpG	-1128	NM_001297573	55809	Hs.485392	NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
0.525663-12	chr6	117996288	117996787	+	0	NA	promoter-TSS (NM_138459)	promoter-TSS (NM_138459)	-80	NM_138459	116150	Hs.289008	NM_138459	ENSG00000153989	NUS1	C6orf68|CDG1AA|MGC:7199|NgBR|TANGO14	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding
1.34304-7	chr1	51796857	51797356	+	0	NA	promoter-TSS (NM_001297663)	promoter-TSS (NM_001297663)	-870	NM_001297663	22996	Hs.112949	NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
3.59519-6	chr12	28932944	28933443	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	-368743	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
13.019	chr4	38111535	38112034	+	0	NA	promoter-TSS (NM_001253913)	promoter-TSS (NM_001253913)	-18	NM_001253913	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
1.62412-12	chr6	167888104	167888603	+	0	NA	Intergenic	Intergenic	-3340	NR_134591	105378127	Hs.58456	NR_134591		LOC105378127	-	uncharacterized LOC105378127	ncRNA
0.163737-11	chr12	3068337	3068836	+	0	NA	promoter-TSS (NM_201443)	promoter-TSS (NM_201443)	108	NM_003213	7004	Hs.94865	NM_003213	ENSG00000197905	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain transcription factor 4	protein-coding
7.23538-9	chr1	213234449	213234948	+	0	NA	intron (NM_001136138, intron 1 of 13)	Tigger8|DNA|TcMar-Tigger	10123	NM_001136138	26750	Hs.591416	NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
2.18963-8	chr1	87381102	87381601	+	0	NA	intron (NM_012262, intron 1 of 6)	intron (NM_012262, intron 1 of 6)	1016	NM_012262	9653	Hs.743280	NM_012262	ENSG00000153936	HS2ST1	dJ604K5.2	heparan sulfate 2-O-sulfotransferase 1	protein-coding
7.87812-14	chr18	8844680	8845179	+	0	NA	Intergenic	Intergenic	127560	NM_015210	23255	Hs.707920	NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
9.24453-10	chr9	115619037	115619536	+	0	NA	intron (NM_001012994, intron 7 of 8)	MIRb|SINE|MIR	33907	NM_033051	57864	Hs.512668	NM_033051	ENSG00000119457	SLC46A2	Ly110|TSCOT	solute carrier family 46 member 2	protein-coding
0.624821-15	chr5	34742893	34743392	+	0	NA	intron (NM_001145525, intron 4 of 19)	intron (NM_001145525, intron 4 of 19)	55478	NM_001145523	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.736576	chr9	123460990	123461489	+	0	NA	intron (NM_001080497, intron 1 of 5)	intron (NM_001080497, intron 1 of 5)	15526	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
0.385789-42	chr1	216988843	216989342	+	0	NA	intron (NM_001243513, intron 1 of 7)	intron (NM_001243513, intron 1 of 7)	-10383	NM_001243514	2104	Hs.444225	NM_001438	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen related receptor gamma	protein-coding
2.1467-4	chr20	20432902	20433401	+	0	NA	intron (NM_020343, intron 37 of 39)	CpG	84386	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
2.58848-5	chr18	60824706	60825205	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	161658	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
3.96856-3	chr7	92465617	92466116	+	0	NA	promoter-TSS (NM_001145306)	promoter-TSS (NM_001145306)	69	NR_110088	101927497	Hs.453788	NR_110086	ENSG00000237819	LOC101927497	-	uncharacterized LOC101927497	ncRNA
19.4692-10	chr17	73913163	73913662	+	0	NA	intron (NM_001319193, intron 22 of 28)	intron (NM_001319193, intron 22 of 28)	-12231	NM_032478	64978	Hs.442609	NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding
0.390538-20	chr10	73847985	73848484	+	0	NA	5' UTR (NM_001244950, exon 1 of 11)	5' UTR (NM_001244950, exon 1 of 11)	297	NM_001244950	9806	Hs.523009	NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2	protein-coding
0.428718-44	chr17	48784487	48784986	+	0	NA	intron (NM_052855, intron 1 of 4)	CpG	534	NM_052855	91369	Hs.463426	NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
2.60428-5	chr4	47915794	47916293	+	0	NA	promoter-TSS (NR_125879)	promoter-TSS (NR_125879)	-201	NR_125879	101927157	Hs.134190	NR_125879		LOC101927157	-	uncharacterized LOC101927157	ncRNA
1.18615-3	chr2	170655402	170655901	+	0	NA	5' UTR (NM_001294145, exon 1 of 12)	5' UTR (NM_001294145, exon 1 of 12)	113	NM_001294145	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	Sjogren syndrome antigen B	protein-coding
1.19186-41	chr2	61921758	61922257	+	0	NA	Intergenic	Intergenic	-156589	NM_003400	7514	Hs.370770	NM_003400	ENSG00000082898	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
1.6877-4	chr3	156071219	156071718	+	0	NA	intron (NM_172159, intron 1 of 13)	MLT1F2|LTR|ERVL-MaLR	62642	NM_001308222	7881	Hs.654519	NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A member regulatory beta subunit 1	protein-coding
1.97226-5	chr1	65533204	65533703	+	0	NA	promoter-TSS (NM_001321852)	promoter-TSS (NM_001321852)	-24	NM_001321853	3716	Hs.207538	NM_002227	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
12.4795-3	chr6	134299321	134299820	+	0	NA	intron (NM_004865, intron 1 of 6)	MIRb|SINE|MIR	25269	NM_004865	9519	Hs.486507	NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
12.0204-3	chr5	14138845	14139344	+	0	NA	Intergenic	L2c|LINE|L2	-4717	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
9.70616-4	chr18	1247286	1247785	+	0	NA	Intergenic	MIRc|SINE|MIR	112095	NR_023925	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
1.50581-18	chr19	5720034	5720533	+	0	NA	promoter-TSS (NM_004793)	promoter-TSS (NM_004793)	-14	NM_004793	9361	Hs.350265	NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
3.41035-16	chr1	149224257	149224756	+	0	NA	Intergenic	CpG	-62624	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
1.72631-18	chr8	33371439	33371938	+	0	NA	promoter-TSS (NM_025115)	promoter-TSS (NM_025115)	-978	NM_001330505	80185	Hs.77135	NM_025115	ENSG00000129696	TTI2	C8orf41|MRT39	TELO2 interacting protein 2	protein-coding
0.731433-13	chr12	108926192	108926691	+	0	NA	intron (NM_014706, intron 12 of 18)	intron (NM_014706, intron 12 of 18)	17390	NM_007076	11153	Hs.661891	NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain containing	protein-coding
0.301184-6	chr15	44212979	44213478	+	0	NA	intron (NM_001322951, intron 1 of 14)	intron (NM_001322951, intron 1 of 14)	-42859	NR_003571	728758	Hs.658099	NR_003571		PIN4P1	-	peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1	pseudo
8.26814	chr8	141679818	141680317	+	0	NA	intron (NM_001316342, intron 29 of 32)	intron (NM_001316342, intron 29 of 32)	-34421	NM_001164623	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
11.5181-2	chr12	27164962	27165461	+	0	NA	intron (NM_016551, intron 1 of 11)	MIRb|SINE|MIR	2128	NM_016551	51768	Hs.438641	NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
11.1748-2	chr10	58364724	58365223	+	0	NA	Intergenic	LTR1|LTR|ERV1	-243939	NM_001005413	11130	Hs.591363	NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
0.920515-17	chr7	150080809	150081735	+	0	NA	intron (NM_173680, intron 1 of 2)	intron (NM_173680, intron 1 of 2)	4866	NM_173680	285971	Hs.655734	NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
1.36677-18	chr19	45803781	45804280	+	0	NA	intron (NM_031417, intron 17 of 17)	MLT1K|LTR|ERVL-MaLR	22205	NM_001824	1158	Hs.334347	NM_001824	ENSG00000104879	CKM	CKMM|M-CK	creatine kinase, M-type	protein-coding
23.2883	chr2	1991098	1991597	+	0	NA	intron (NM_001329845, intron 5 of 24)	intron (NM_001329845, intron 5 of 24)	-243028	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
10.7212	chr12	56732325	56732824	+	0	NA	promoter-TSS (NM_016584)	promoter-TSS (NM_016584)	-89	NM_016584	51561	Hs.98309	NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
0.47692-10	chr8	144820515	144821014	+	0	NA	intron (NR_033849, intron 2 of 3)	CpG	4454	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	onco-lncRNA-3	FAM83H antisense RNA 1 (head to head)	ncRNA
0.925886-9	chr5	137611069	137611568	+	0	NA	Intergenic	Intergenic	-1065	NM_001496	2676	Hs.58042	NM_001496	ENSG00000146013	GFRA3	GDNFR3	GDNF family receptor alpha 3	protein-coding
8.38632-5	chr1	100589124	100589623	+	0	NA	intron (NM_194292, intron 2 of 16)	intron (NM_194292, intron 2 of 16)	9278	NM_001304829	163786	Hs.591447	NM_194292	ENSG00000156876	SASS6	MCPH14|SAS-6|SAS6	SAS-6 centriolar assembly protein	protein-coding
0.443122	chr3	87003284	87003783	+	0	NA	intron (NM_016206, intron 3 of 3)	intron (NM_016206, intron 3 of 3)	36740	NM_001320494	389136	Hs.606507	NM_016206	ENSG00000206538	VGLL3	VGL-3|VGL3	vestigial like family member 3	protein-coding
0.296531-114	chr9_gl000199_random	53568	54067	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
4.08935-14	chr9	116105956	116106455	+	0	NA	Intergenic	Intergenic	-3585	NM_001012361	114987	Hs.133331	NM_145241	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
1.82435-13	chr13	88323351	88323850	+	0	NA	promoter-TSS (NR_033829)	promoter-TSS (NR_033829)	-382	NR_033829	642345	Hs.508337	NR_033829	ENSG00000228824	MIR4500HG	-	MIR4500 host gene	ncRNA
4.24812-9	chr6	7313207	7313706	+	0	NA	promoter-TSS (NR_120448)	promoter-TSS (NR_120448)	91	NM_001292008	6745	Hs.114033	NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
7.61954-4	chr1	213306130	213306629	+	0	NA	intron (NM_001136138, intron 5 of 13)	intron (NM_001136138, intron 5 of 13)	81804	NM_001136138	26750	Hs.591416	NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
10.4769-4	chr13	27437947	27438446	+	0	NA	Intergenic	Intergenic	-103274	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
0.452752-5	chr11	108846364	108846863	+	0	NA	Intergenic	Intergenic	310861	NM_004398	1662	Hs.591931	NM_004398	ENSG00000178105	DDX10	HRH-J8	DEAD-box helicase 10	protein-coding
1.00727-7	chr14	94436830	94437329	+	0	NA	intron (NM_001202429, intron 1 of 9)	MIR|SINE|MIR	5997	NM_001202429	51676	Hs.510327	NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
2.54925-10	chr16	53659592	53660091	+	0	NA	intron (NM_001330538, intron 21 of 25)	SVA_B|Other|Other	78009	NM_001328422	23322	Hs.298382	NM_015272	ENSG00000103494	RPGRIP1L	CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134	RPGRIP1 like	protein-coding
4.55932-17	chr8	82252653	82253152	+	0	NA	Intergenic	Intergenic	60184	NM_001444	2171	Hs.408061	NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
0.0348833-12	chr11	66175884	66176383	+	0	NA	Intergenic	CpG	-12342	NM_178864	266743	Hs.256036	NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
37.6447	chr2	15136435	15136934	+	0	NA	Intergenic	Intergenic	361469	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding
6.79854-3	chr6	165311056	165311555	+	0	NA	Intergenic	Intergenic	-75753	NR_131926	105378111		NR_131926		MEAT6	-	melanoma-associated transcript 6	ncRNA
1.69411-13	chr16	68344667	68345386	+	0	NA	promoter-TSS (NM_001290018)	promoter-TSS (NM_001290018)	9	NM_001290018	54496	Hs.640229	NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
2.36572-15	chr11	75526453	75526952	+	0	NA	promoter-TSS (NR_144531)	promoter-TSS (NR_144531)	490	NM_003369	7405	Hs.202470	NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
0.540393-35	chr11	116077969	116078468	+	0	NA	Intergenic	Intergenic	-431921	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
18.0967-5	chr3	158390267	158390766	+	0	NA	promoter-TSS (NM_020169)	promoter-TSS (NM_020169)	-34	NM_020169	56925	Hs.478067	NM_020169	ENSG00000079257	LXN	ECI|TCI	latexin	protein-coding
2.07608-14	chr5	34491368	34491867	+	0	NA	Intergenic	Intergenic	-164816	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
5.0724-4	chr14	50778703	50779202	+	0	NA	promoter-TSS (NR_033761)	promoter-TSS (NR_033761)	-5	NM_024884	79944	Hs.256034	NM_024884	ENSG00000087299	L2HGDH	C14orf160|L2HGA	L-2-hydroxyglutarate dehydrogenase	protein-coding
4.90797-3	chr3	113465428	113465927	+	0	NA	promoter-TSS (NM_001308445)	promoter-TSS (NM_001308445)	-189	NM_001690	523	Hs.477155	NM_001690	ENSG00000114573	ATP6V1A	ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1	ATPase H+ transporting V1 subunit A	protein-coding
3.08919-4	chr3	131221501	131222000	+	0	NA	5' UTR (NM_007208, exon 1 of 10)	5' UTR (NM_007208, exon 1 of 10)	110	NM_007208	11222	Hs.205163	NM_007208	ENSG00000114686	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
18.6328-3	chr11	15584487	15584986	+	0	NA	Intergenic	Intergenic	-80695	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
1.39662-28	chr2	184456964	184457463	+	0	NA	Intergenic	MER61D|LTR|ERV1	468130	NR_109856	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
1.43271-19	chr4	53728328	53728827	+	0	NA	promoter-TSS (NM_023940)	promoter-TSS (NM_023940)	82	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
2.11832-10	chr8	128471096	128471595	+	0	NA	intron (NR_024393, intron 4 of 4)	L1ME3A|LINE|L1	23039	NR_117100	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
0.231917-46	chr9	88650289	88650788	+	0	NA	exon (NM_016548, exon 8 of 10)	exon (NM_016548, exon 8 of 10)	63972	NM_016548	51280	Hs.494337	NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
4.81486-13	chr7	124956464	124956963	+	0	NA	intron (NR_110188, intron 3 of 8)	L1M1|LINE|L1	-52368	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
0.584886-5	chr2	66662223	66662722	+	0	NA	promoter-TSS (NM_002398)	promoter-TSS (NM_002398)	-60	NM_002398	4211	Hs.526754	NM_002398	ENSG00000143995	MEIS1	-	Meis homeobox 1	protein-coding
12.1538	chr1	33438358	33438857	+	0	NA	Intergenic	CpG	-8193	NM_001300826	127544	Hs.591504	NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
1.43271-25	chr7	21301299	21301798	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-166104	NR_137166	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
0.172766-6	chr8	73736317	73736816	+	0	NA	intron (NM_004770, intron 2 of 2)	LTR78|LTR|ERV1	92286	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
13.2698	chr15	86086939	86087438	+	0	NA	intron (NM_007200, intron 5 of 36)	intron (NM_007200, intron 5 of 36)	-75993	NM_001270546	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
4.34152-3	chr7	151249409	151249908	+	0	NA	Intergenic	Intergenic	-32648	NM_005614	6009	Hs.283521	NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog enriched in brain	protein-coding
1.75874-14	chr2	47261690	47262189	+	0	NA	intron (NM_020458, intron 15 of 19)	intron (NM_020458, intron 15 of 19)	-92945	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
9.43095-5	chr22	30870953	30871452	+	0	NA	Intergenic	Intergenic	-3168	NM_001257378	266629	Hs.505601	NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
1.82435-26	chr16	75182606	75183105	+	0	NA	promoter-TSS (NM_001318475)	promoter-TSS (NM_001318475)	-94	NM_001318475	162239	Hs.388813	NM_153688	ENSG00000184517	ZFP1	ZNF475	ZFP1 zinc finger protein	protein-coding
8.72895-6	chr4	39529219	39529718	+	0	NA	promoter-TSS (NM_001184701)	promoter-TSS (NM_001184701)	9	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	ncRNA
19.393-2	chr5	171233976	171234475	+	0	NA	Intergenic	Intergenic	21349	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding
13.7986-3	chr1	36689660	36690159	+	0	NA	promoter-TSS (NM_001321473)	promoter-TSS (NM_001321473)	-104	NM_001321471	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
8.29738-4	chr17	79789961	79790460	+	0	NA	intron (NM_001288798, intron 1 of 6)	intron (NM_001288798, intron 1 of 6)	960	NM_207368	348262	Hs.514632	NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
10.4096	chr9	137837611	137838110	+	0	NA	Intergenic	Intergenic	-28011	NM_002003	2219	Hs.440898	NM_002003	ENSG00000085265	FCN1	FCNM	ficolin 1	protein-coding
0.0305075-2	chr3	45079083	45079582	+	0	NA	Intergenic	Intergenic	7710	NM_001308394	7123	Hs.476092	NM_003278	ENSG00000163815	CLEC3B	TN|TNA	C-type lectin domain family 3 member B	protein-coding
0.0788851-5	chr17	76712894	76713393	+	0	NA	promoter-TSS (NM_001292019)	promoter-TSS (NM_001292019)	-29	NM_001292019	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
0.79355-17	chr7	150715153	150715652	+	0	NA	exon (NM_001317056, exon 7 of 15)	exon (NM_001317056, exon 7 of 15)	6184	NR_073169	285973	Hs.707300	NM_173681	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
1.07349-4	chr7	127777240	127777739	+	0	NA	Intergenic	Intergenic	55576	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
0.0612309-31	chr18	394879	395378	+	0	NA	intron (NM_130386, intron 2 of 9)	intron (NM_130386, intron 2 of 9)	105601	NM_130386	81035	Hs.464422	NM_030781	ENSG00000158270	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin subfamily member 12	protein-coding
10.1773	chr20	19991147	19991646	+	0	NA	Intergenic	Intergenic	-6538	NM_181528	51126	Hs.368783	NM_016100	ENSG00000173418	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
0.438316-19	chr3	169906827	169907326	+	0	NA	Intergenic	Intergenic	-7539	NM_024947	80012	Hs.529592	NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
2.04815-13	chr8	94350860	94351359	+	0	NA	Intergenic	Intergenic	-172030	NM_001242668	389676	Hs.386711	NM_001242668		C8orf87	-	chromosome 8 open reading frame 87	protein-coding
0.979971-17	chr13	52026981	52027480	+	0	NA	promoter-TSS (NM_001039937)	promoter-TSS (NM_001039937)	45	NM_001039938	26512	Hs.439440	NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
0.400052-40	chr5	19549142	19549641	+	0	NA	intron (NM_001291956, intron 10 of 14)	MSTB|LTR|ERVL-MaLR	336990	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
0.305841-28	chr8	10192718	10193217	+	0	NA	intron (NM_001199729, intron 6 of 6)	intron (NM_001199729, intron 6 of 6)	-139108	NR_120604	101929191	Hs.595262	NR_120604	ENSG00000253641	LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
21.3906-2	chr15	93012211	93012710	+	0	NA	TTS (NM_006011)	TTS (NM_006011)	2316	NR_126501	104613533	Hs.97584	NR_126501	ENSG00000259170	LOC104613533	-	uncharacterized LOC104613533	ncRNA
0.190881-10	chr2	180898546	180899045	+	0	NA	Intergenic	L1MA2|LINE|L1	-27015	NM_020943	57703	Hs.311363	NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
15.3611-2	chr16	84124916	84125415	+	0	NA	intron (NM_003791, intron 7 of 22)	intron (NM_003791, intron 7 of 22)	25383	NM_003791	8720	Hs.75890	NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
0.2365-5	chr5	33726678	33727177	+	0	NA	intron (NM_030955, intron 3 of 23)	intron (NM_030955, intron 3 of 23)	165370	NM_030955	81792	Hs.12680	NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
1.50581-4	chr10	85938873	85939372	+	0	NA	intron (NM_207373, intron 2 of 2)	intron (NM_207373, intron 2 of 2)	5568	NM_207373	387695	Hs.298713	NM_207373	ENSG00000188373	C10orf99	AP-57|CSBF|UNQ1833	chromosome 10 open reading frame 99	protein-coding
13.0103-5	chr15	75115556	75116055	+	0	NA	intron (NM_021819, intron 11 of 13)	intron (NM_021819, intron 11 of 13)	-3146	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII|Nbla11589	complexin 3	protein-coding
6.30784-12	chr17	1933801	1934300	+	0	NA	intron (NR_144476, intron 1 of 12)	intron (NR_144476, intron 1 of 12)	644	NM_001346575	1801	Hs.513856	NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
2.71646-4	chr2	160474075	160474574	+	0	NA	non-coding (NR_110587, exon 2 of 2)	non-coding (NR_110587, exon 2 of 2)	-1212	NM_013450	29994	Hs.470369	NM_013450	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain 2B	protein-coding
0.419142-31	chr7	116356669	116357168	+	0	NA	intron (NM_001127500, intron 2 of 20)	intron (NM_001127500, intron 2 of 20)	44474	NM_001127500	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
6.96804-2	chr6	11593887	11594386	+	0	NA	Intergenic	Intergenic	55676	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
0.0656377-12	chr14	38343773	38344272	+	0	NA	Intergenic	Intergenic	27307	NR_135286	400208	Hs.660501	NR_135286	ENSG00000259091	LINC00517	C14orf26	long intergenic non-protein coding RNA 517	ncRNA
2.39578-10	chr9	6080083	6080582	+	0	NA	Intergenic	Intergenic	-64692	NM_012416	26953	Hs.167496	NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
0.32452	chr12	22322204	22322703	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	123345	NR_135117	55907	Hs.311346	NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
0.338583-27	chr9	109460098	109460597	+	0	NA	Intergenic	Intergenic	82008	NR_104145	100996590	Hs.147110	NR_104145	ENSG00000234323	LINC01505	-	long intergenic non-protein coding RNA 1505	ncRNA
0.315171-23	chr2	213018619	213019118	+	0	NA	intron (NM_005235, intron 1 of 27)	L2a|LINE|L2	272216	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
2.18245-11	chr22	23775381	23775880	+	0	NA	promoter-TSS (NR_110538)	promoter-TSS (NR_110538)	-121	NR_110538	101929374	Hs.616963	NR_110538	ENSG00000234928	LINC01659	-	long intergenic non-protein coding RNA 1659	ncRNA
0.141246-6	chr1	54719701	54720200	+	0	NA	intron (NM_018070, intron 6 of 16)	intron (NM_018070, intron 6 of 16)	17834	NR_103541	619518	Hs.591438	NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
0.579919-11	chr1	68001015	68001514	+	0	NA	Intergenic	Intergenic	-105141	NM_001018067	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
2.66803-7	chr9	37994667	37995166	+	0	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	74294	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
3.22393-15	chr7	6048797	6049296	+	0	NA	promoter-TSS (NM_000535)	promoter-TSS (NM_000535)	164	NM_006303	7965	Hs.301613	NM_006303	ENSG00000106305	AIMP2	JTV-1|JTV1|P38	aminoacyl tRNA synthetase complex interacting multifunctional protein 2	protein-coding
1.81115	chr18	3771433	3771932	+	0	NA	intron (NM_001003809, intron 2 of 9)	MIR3|SINE|MIR	73676	NM_001242765	9229	Hs.594640	NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
3.31614-13	chr10	12527194	12527693	+	0	NA	intron (NM_020397, intron 1 of 9)	intron (NM_020397, intron 1 of 9)	-93309	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
13.7986-9	chr9	97535137	97535636	+	0	NA	exon (NM_001193331, exon 3 of 8)	exon (NM_001193331, exon 3 of 8)	13455	NM_001193329	84909	Hs.434253	NM_032823	ENSG00000148120	C9orf3	AOPEP|AP-O|APO|C90RF3|ONPEP	chromosome 9 open reading frame 3	protein-coding
26.1798	chr21	27764894	27765393	+	0	NA	promoter-TSS (NR_135516)	promoter-TSS (NR_135516)	-811	NR_135516	100996571	Hs.570432	NR_135515	ENSG00000197934	CYYR1-AS1	-	cysteine and tyrosine rich 1 antisense RNA 1	ncRNA
5.22879-9	chr6	15754452	15754951	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-91412	NM_001271669	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
0.2365-27	chr20	3748321	3748820	+	0	NA	promoter-TSS (NM_001039140)	promoter-TSS (NM_001039140)	-118	NM_001039140	54976	Hs.274422	NM_017874	ENSG00000101220	C20orf27	-	chromosome 20 open reading frame 27	protein-coding
0.264104-9	chr9	130732905	130733404	+	0	NA	intron (NM_001035254, intron 1 of 10)	L2c|LINE|L2	9658	NM_001035254	399665	Hs.535972	NM_203305	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102 member A	protein-coding
17.5945-2	chr20	56413822	56414321	+	0	NA	Intergenic	Intergenic	-56379	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	mir-4532	microRNA 4532	ncRNA
0.109954-29	chr2	236519966	236520465	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	105820	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
0.438316-18	chr20	21283688	21284187	+	0	NA	promoter-TSS (NM_012255)	promoter-TSS (NM_012255)	15	NM_012255	22803	Hs.255932	NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
0.254883-45	chr2	18701668	18702167	+	0	NA	Intergenic	Intergenic	40042	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
1.64944-7	chr18	30510599	30511098	+	0	NA	Intergenic	Intergenic	-157874	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
3.31614-6	chr3	169756558	169757057	+	0	NA	5' UTR (NM_014373, exon 2 of 4)	5' UTR (NM_014373, exon 2 of 4)	1072	NM_014373	26996	Hs.231320	NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
4.36519-11	chr2	220406224	220406912	+	0	NA	exon (NM_001195731, exon 2 of 4)	exon (NM_001195731, exon 2 of 4)	1251	NM_001195731	79586	Hs.516711	NM_024536	ENSG00000123989	CHPF	CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
0.8302-10	chr17	16267007	16267506	+	0	NA	Intergenic	Intergenic	-10444	NM_181716	201161	Hs.433422	NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding
1.58015-10	chr11	34023904	34024403	+	0	NA	Intergenic	Intergenic	-49077	NM_203364	4076	Hs.471818	NM_005898	ENSG00000135387	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
1.54282-5	chr9	122318328	122318827	+	0	NA	Intergenic	Intergenic	-186838	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	BRINP1	DBC1|DBCCR1|FAM5A	BMP/retinoic acid inducible neural specific 1	protein-coding
17.4232	chr2	42981407	42981906	+	0	NA	3' UTR (NM_001282756, exon 17 of 17)	3' UTR (NM_001282756, exon 17 of 17)	9745	NM_148962	165140	Hs.168439	NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
2.48721-6	chr17	78004525	78005024	+	0	NA	intron (NM_019020, intron 1 of 11)	intron (NM_019020, intron 1 of 11)	4883	NM_019020	125058	Hs.369819	NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
1.09579-5	chr7	96287030	96287529	+	0	NA	intron (NR_038948, intron 1 of 4)	intron (NR_038948, intron 1 of 4)	6371	NR_038948	100506136	Hs.729869	NR_038948	ENSG00000127922	LOC100506136	-	uncharacterized LOC100506136	ncRNA
0.0261362-25	chr12	57915696	57916597	+	0	NA	promoter-TSS (NM_052897)	promoter-TSS (NM_052897)	-513	NM_052897	114785	Hs.524523	NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
1.37869-12	chr3	128303181	128303680	+	0	NA	Intergenic	Intergenic	-8501	NR_125802	23434	Hs.194283	NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
11.5428	chr19	53446041	53446540	+	0	NA	promoter-TSS (NR_037805)	promoter-TSS (NR_037805)	-443	NR_037805	399669	Hs.745445	NM_203307	ENSG00000213801	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
10.1368	chr7	151716975	151717474	+	0	NA	TTS (NM_145292)	TTS (NM_145292)	-5535	NM_022087	63917	Hs.647109	NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
4.32974-10	chr2	242640582	242641081	+	0	NA	promoter-TSS (NM_001330162)	promoter-TSS (NM_001330162)	-603	NM_001330162	84289	Hs.529172	NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
0.264104	chr13	106095187	106095686	+	0	NA	Intergenic	Intergenic	-22780	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
2.44125-3	chr2	134881526	134882025	+	0	NA	Intergenic	Intergenic	-2921	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
2.82329-4	chr7	102073671	102074170	+	0	NA	promoter-TSS (NM_032831)	promoter-TSS (NM_032831)	-57	NM_032831	80228	Hs.363308	NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
1.02373-14	chr2	25475024	25475523	+	0	NA	promoter-TSS (NM_001320893)	promoter-TSS (NM_001320893)	-89	NM_153759	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
19.6257-7	chr12	53307134	53307633	+	0	NA	intron (NM_001256293, intron 1 of 8)	intron (NM_001256293, intron 1 of 8)	-8515	NM_002273	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
0.385789-6	chr8	142147675	142148174	+	0	NA	intron (NM_014957, intron 2 of 22)	intron (NM_014957, intron 2 of 22)	9204	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
19.7881	chr5	101642904	101643403	+	0	NA	Intergenic	L2a|LINE|L2	-10900	NM_180991	353189	Hs.127648	NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
1.76526-8	chr9	35905856	35906355	+	0	NA	promoter-TSS (NM_001039792)	promoter-TSS (NM_001039792)	-84	NM_001039792	646962	Hs.208081	NM_001039792	ENSG00000196196	HRCT1	LGLL338|PRO537|UNQ338	histidine rich carboxyl terminus 1	protein-coding
2.29885-8	chr2	20833601	20834100	+	0	NA	intron (NM_022460, intron 4 of 6)	intron (NM_022460, intron 4 of 6)	17014	NM_022460	64342	Hs.531785	NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
0.584886-8	chr7	102003941	102004440	+	0	NA	promoter-TSS (NR_038967)	promoter-TSS (NR_038967)	-76	NM_001347880	100289561	Hs.406395	NM_001242713		LOC100289561	-	uncharacterized LOC100289561	protein-coding
3.39135-21	chr8	88986184	88986683	+	0	NA	Intergenic	Intergenic	-100137	NM_152418	138009	Hs.371738	NM_152418	ENSG00000176566	DCAF4L2	WDR21C	DDB1 and CUL4 associated factor 4 like 2	protein-coding
11.6685	chr8	127534647	127535146	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	35815	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding
0.254883-58	chr5	36487968	36488467	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-118240	NM_001289939	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
1.19186-42	chr2	150303259	150303758	+	0	NA	intron (NM_194317, intron 2 of 4)	intron (NM_194317, intron 2 of 4)	116479	NM_194317	130574	Hs.21929	NM_194317	ENSG00000187123	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
0.540393-44	chr11	59318285	59318784	+	0	NA	Intergenic	Intergenic	36148	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
1.98596-10	chr4	4613990	4614489	+	0	NA	intron (NR_037888, intron 2 of 5)	intron (NR_037888, intron 2 of 5)	-70166	NM_001346282	53407	Hs.584913	NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
0.644927-6	chr9	97810919	97811418	+	0	NA	intron (NM_032823, intron 11 of 14)	CpG	-16464	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
1.04025-6	chr16	67312609	67313108	+	0	NA	promoter-TSS (NM_001129728)	promoter-TSS (NM_001129728)	-192	NM_001129728	25894	Hs.188781	NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
2.89883-24	chr1	117176855	117177354	+	0	NA	intron (NM_001007237, intron 2 of 10)	intron (NM_001007237, intron 2 of 10)	32474	NM_001542	3321	Hs.171057	NM_001542	ENSG00000143061	IGSF3	EWI-3|LCDD|V8	immunoglobulin superfamily member 3	protein-coding
1.29596-18	chr4	36677727	36678226	+	0	NA	Intergenic	Intergenic	-249926	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
1.97911	chr1	119870047	119870546	+	0	NA	Intergenic	CpG	-41103	NM_016527	51179	Hs.659767	NM_016527	ENSG00000116882	HAO2	GIG16|HAOX2	hydroxyacid oxidase 2	protein-coding
0.109954-25	chr13	31247712	31248662	+	0	NA	Intergenic	Intergenic	-39428	NM_001204406	241	Hs.507658	NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
0.990869-5	chr20	4014240	4014739	+	0	NA	Intergenic	SVA_E|Other|Other	-18251	NM_007219	11237	Hs.547576	NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
0.172766-42	chr2	10183264	10183763	+	0	NA	promoter-TSS (NM_001177718)	promoter-TSS (NM_001177718)	15	NR_135558	101929882	Hs.405158	NR_135558		LOC101929882	-	uncharacterized LOC101929882	ncRNA
0.362122-6	chr1	232468370	232468869	+	0	NA	Intergenic	SVA_D|Other|Other	182735	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding
0.545314-6	chr12	113622607	113623106	+	0	NA	promoter-TSS (NM_001286215)	promoter-TSS (NM_001286215)	428	NM_024072	79039	Hs.506861	NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
1.46302-3	chr19	506714	507213	+	0	NA	promoter-TSS (NM_033513)	promoter-TSS (NM_033513)	-534	NM_033513	91978	Hs.369613	NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
9.24453-14	chr15	28769692	28770191	+	0	NA	intron (NR_033351, intron 12 of 17).2	intron (NR_033351, intron 12 of 17).2	8202	NR_033351	100132565	Hs.510812	NM_001012452	ENSG00000153684	GOLGA8F	-	golgin A8 family member F	pseudo
3.67543-6	chr17	40433406	40433905	+	0	NA	Intergenic	Intergenic	-5231	NM_012448	6777	Hs.595276	NM_012448	ENSG00000173757	STAT5B	STAT5	signal transducer and activator of transcription 5B	protein-coding
1.99283-15	chr12	30906717	30907216	+	0	NA	5' UTR (NM_032156, exon 1 of 18)	5' UTR (NM_032156, exon 1 of 18)	482	NM_032156	65981	Hs.234355	NM_023925	ENSG00000110888	CAPRIN2	C1QDC1|EEG-1|EEG1|RNG140	caprin family member 2	protein-coding
0.665127-2	chr2	128180521	128181020	+	0	NA	TTS (NR_039944)	TTS (NR_039944)	424	NR_039944	100616187		NR_039944	ENSG00000264075	MIR4783	-	microRNA 4783	ncRNA
0.190881-5	chr20	48807228	48807727	+	0	NA	5' UTR (NM_001285879, exon 1 of 1)	5' UTR (NM_001285879, exon 1 of 1)	357	NM_001285879	1051	Hs.517106	NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|IL6DBP|NF-IL6|TCF5	CCAAT/enhancer binding protein beta	protein-coding
3.04518	chr22	39319730	39320229	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-33548	NM_145699	200315	Hs.226307	NM_145699	ENSG00000128383	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3A	protein-coding
0.496351-20	chr19	50887693	50888192	+	0	NA	intron (NR_046402, intron 1 of 25)	intron (NR_046402, intron 1 of 25)	362	NM_002691	5424	Hs.279413	NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
7.28158-2	chr20	6397549	6398048	+	0	NA	Intergenic	Intergenic	-9581	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA
1.82435-28	chr7	102232917	102233416	+	0	NA	intron (NM_001079877, intron 15 of 19)	intron (NM_001079877, intron 15 of 19)	-20098	NM_001097615	548644	Hs.610255	NM_001015884	ENSG00000168255	POLR2J3	POLR2J2|RPB11b1|RPB11b2	RNA polymerase II subunit J3	protein-coding
27.0115	chr13	74926365	74926864	+	0	NA	Intergenic	L1PA8|LINE|L1	66638	NR_144452	100288208	Hs.532467	NM_001013669		LOC100288208	-	uncharacterized LOC100288208	ncRNA
23.6051	chr10	16714170	16714669	+	0	NA	intron (NM_152724, intron 7 of 7)	L1ME1|LINE|L1	145034	NM_012425	6251	Hs.524161	NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
0.132283-22	chr2	73522807	73523306	+	0	NA	Intergenic	Intergenic	-2227	NM_001965	1961	Hs.3052	NM_001965	ENSG00000135625	EGR4	NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
1.45694-18	chr2	241922690	241923189	+	0	NA	Intergenic	CpG	-15316	NM_001080437	25992	Hs.471834	NM_001080437	ENSG00000162804	SNED1	SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
1.36677-2	chr19	38893844	38894343	+	0	NA	exon (NM_174905, exon 2 of 8)	exon (NM_174905, exon 2 of 8)	318	NM_174905	147965	Hs.355162	NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
7.90485-4	chr16	67034313	67034812	+	0	NA	exon (NM_173815, exon 3 of 12)	exon (NM_173815, exon 3 of 12)	146	NM_001190201	283848	Hs.346947	NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
9.06578	chr10	71168538	71169037	+	0	NA	exon (NM_001057, exon 3 of 5)	exon (NM_001057, exon 3 of 5)	7887	NM_001057	6865	Hs.88372	NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
0.0261362-3	chr15	23207750	23208249	+	0	NA	non-coding (NR_003521, exon 1 of 11)	non-coding (NR_003521, exon 1 of 11)	358	NR_003521	339005	Hs.212670	NR_003521		WHAMMP3	WHAMML1|WHDC1L1	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3	pseudo
0.840728-7	chr12	64667365	64667864	+	0	NA	intron (NM_001170633, intron 11 of 12)	MLT1I|LTR|ERVL-MaLR	-51538	NM_152440	144577	Hs.444671	NM_152440	ENSG00000174206	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
0.190881-27	chr19	4343253	4343752	+	0	NA	promoter-TSS (NM_001159846)	promoter-TSS (NM_001159846)	-22	NM_001159846	84954	Hs.321689	NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
0.0921731-4	chr6	142623336	142623835	+	0	NA	intron (NM_001032394, intron 1 of 24)	intron (NM_001032394, intron 1 of 24)	529	NM_001032394	57211	Hs.743302	NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
1.87755-4	chr9	706612	707481	+	0	NA	5' UTR (NM_153186, exon 1 of 11)	5' UTR (NM_153186, exon 1 of 11)	240	NM_153186	23189	Hs.306764	NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
0.136762-17	chr21	16113465	16113964	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-98286	NM_001256579	388813	Hs.334177	NM_001256579	ENSG00000243440	LOC388813	-	uncharacterized protein ENSP00000383407-like	protein-coding
3.31614-16	chr2	216887698	216888197	+	0	NA	Intergenic	Intergenic	-9601	NM_018000	55686	Hs.620391	NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
0.574959-2	chr1	159851576	159852075	+	0	NA	intron (NM_012337, intron 7 of 11)	intron (NM_012337, intron 7 of 11)	18044	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
1.76526-12	chr7	90584927	90585426	+	0	NA	intron (NM_001287137, intron 7 of 12)	intron (NM_001287137, intron 7 of 12)	246046	NM_001287136	5218	Hs.258576	NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding
0.91515-5	chr14	61620144	61620643	+	0	NA	Intergenic	Intergenic	128137	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
0.291884-23	chr11	72532922	72533799	+	0	NA	intron (NM_033388, intron 5 of 17)	CpG-4560	7909	NM_001318766	89849	Hs.653186	NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
1.17475-29	chr5	122775316	122775815	+	0	NA	Intergenic	Intergenic	-16279	NM_153223	153241	Hs.483209	NM_153223	ENSG00000168944	CEP120	CCDC100|SRTD13	centrosomal protein 120	protein-coding
0.0744648-41	chr6	30712047	30712546	+	0	NA	promoter-TSS (NM_003897).4	promoter-TSS (NM_003897).4	31	NM_003897	8870	Hs.76095	NM_003897	ENSG00000137331	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding
0.0348833-5	chr13	99650110	99650609	+	0	NA	intron (NM_001130049, intron 1 of 32)	intron (NM_001130049, intron 1 of 32)	-20021	NM_001130048	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
40.9313	chr21	34216936	34217435	+	0	NA	Intergenic	Intergenic	-31132	NM_001162495	56245	Hs.517235	NM_019596	ENSG00000205929	C21orf62	B37|C21orf120|PRED81	chromosome 21 open reading frame 62	protein-coding
0.942041	chr18	37829299	37829798	+	0	NA	Intergenic	Intergenic	183298	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA
0.291884-3	chr4	89165949	89166448	+	0	NA	Intergenic	MER52A|LTR|ERV1	-13724	NM_001257386	9429	Hs.480218	NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding
11.9791-5	chr11	123543199	123543698	+	0	NA	Intergenic	Intergenic	-18133	NM_001040151	55800	Hs.4865	NM_018400	ENSG00000166257	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium voltage-gated channel beta subunit 3	protein-coding
7.14443	chr11	86351287	86351786	+	0	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	31704	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
2.16811-6	chr4	148605115	148605614	+	0	NA	promoter-TSS (NM_001304458)	promoter-TSS (NM_001304458)	17	NM_001304458	90826	Hs.591692	NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
2.73273	chr16	19142554	19143053	+	0	NA	Intergenic	Intergenic	17549	NR_028028	162073	Hs.530899	NM_001034841	ENSG00000205730	ITPRIPL2	-	inositol 1,4,5-trisphosphate receptor interacting protein like 2	protein-coding
0.920515-12	chr11	47939469	47939968	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-62392	NM_001098503	5795	Hs.318547	NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type J	protein-coding
4.52225-14	chr8	73685213	73685712	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	41182	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
0.629839-20	chr15	64973561	64974060	+	0	NA	intron (NM_015042, intron 8 of 8)	intron (NM_015042, intron 8 of 8)	21670	NM_002537	4947	Hs.744924	NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
1.2436-20	chr10	26666283	26666782	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-60734	NM_019043	54518	Hs.310421	NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
0.589858-21	chr7	150637496	150637995	+	0	NA	Intergenic	Intergenic	15172	NM_001204798	3757	Hs.647099	NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
7.14443-7	chr14	73525329	73525828	+	0	NA	intron (NM_021239, intron 1 of 18)	CpG	357	NM_021239	58517	Hs.531106	NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
0.925886-11	chr17	2414710	2415209	+	0	NA	intron (NM_024086, intron 1 of 9)	intron (NM_024086, intron 1 of 9)	241	NM_024086	79066	Hs.632237	NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase like 16	protein-coding
4.64706-9	chr9	37485425	37485924	+	0	NA	promoter-TSS (NM_001282766)	promoter-TSS (NM_001282766)	-258	NM_022490	64425	Hs.591087	NM_022490	ENSG00000137054	POLR1E	PAF53|PRAF1	RNA polymerase I subunit E	protein-coding
1.16339-2	chr17	21153245	21153744	+	0	NA	intron (NM_152914, intron 1 of 2)	L2a|LINE|L2	3084	NM_152914	256302	Hs.654713	NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
0.525663-5	chr7	149551662	149552161	+	0	NA	intron (NM_001099220, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	16455	NM_001099220	643641	Hs.731923	NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
4.42493-13	chr1	178613334	178613833	+	0	NA	Intergenic	Intergenic	-33301	NR_039622	100616328		NR_039622	ENSG00000266417	MIR4424	-	microRNA 4424	ncRNA
0.0261362-43	chrX	75364916	75365415	+	0	NA	Intergenic	CpG	-27599	NM_001300888	51260	Hs.370100	NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
0.48177-45	chr9	127602457	127602956	+	0	NA	Intergenic	Intergenic	-12990	NM_001276375	401551	Hs.343383	NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
0.101054-33	chr16	87914626	87915125	+	0	NA	Intergenic	Intergenic	-11770	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
1.42668-12	chr6	112126671	112127170	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-46586	NM_153048	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
0.395292-5	chr1	75545462	75545961	+	0	NA	Intergenic	Intergenic	-48408	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
0.123337-26	chr5	35183168	35183667	+	0	NA	intron (NM_000949, intron 1 of 9)	L3|LINE|CR1	47274	NM_000949	5618	Hs.368587	NM_000949	ENSG00000113494	PRLR	HPRL|MFAB|hPRLrI	prolactin receptor	protein-coding
2.51037-4	chr6	118641010	118641509	+	0	NA	Intergenic	Intergenic	-181277	NR_002730	23629	Hs.648050	NR_002730		BRD7P3	BP75	bromodomain containing 7 pseudogene 3	pseudo
0.609802-15	chr5	162886680	162887179	+	0	NA	promoter-TSS (NM_001142557)	promoter-TSS (NM_001142557)	231	NR_138427	134492	Hs.140443	NM_145266	ENSG00000170584	NUDCD2	NudCL2	NudC domain containing 2	protein-coding
3.8934-4	chr3	134753059	134753558	+	0	NA	intron (NM_004441, intron 3 of 15)	intron (NM_004441, intron 3 of 15)	239209	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
0.0305075-74	chr8	91815371	91815870	+	0	NA	intron (NM_022351, intron 2 of 12)	intron (NM_022351, intron 2 of 12)	11699	NM_022351	64168	Hs.719466	NM_022351	ENSG00000123119	NECAB1	EFCBP1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
3.47754-2	chr9	120009981	120010480	+	0	NA	intron (NM_014010, intron 2 of 21)	MIRb|SINE|MIR	-66750	NR_003708	100124538	Hs.693445	NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
22.815-2	chr16	10835704	10836203	+	0	NA	Intergenic	MIRb|SINE|MIR	-1690	NM_002484	4682	Hs.81469	NM_002484	ENSG00000103274	NUBP1	NBP|NBP1|NBP35	nucleotide binding protein 1	protein-coding
0.0392635-17	chr16	5147969	5148468	+	0	NA	promoter-TSS (NM_001289029)	promoter-TSS (NM_001289029)	-397	NM_201400	196483	Hs.406461	NM_201400	ENSG00000118894	EEF2KMT	FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
8.66461-10	chr6	116157835	116158334	+	0	NA	Intergenic	SVA_B|Other|Other	-193085	NR_134602	105377962	Hs.571066	NR_134602		LOC105377962	-	uncharacterized LOC105377962	ncRNA
12.993-5	chr1	16108869	16109368	+	0	NA	intron (NM_001024216, intron 4 of 4)	intron (NM_001024216, intron 4 of 4)	17659	NM_001024216	54751	Hs.530101	NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
0.47692-6	chr4	190123196	190123695	+	0	NA	Intergenic	Intergenic	-457315	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
3.85103-23	chr3	173113136	173113635	+	0	NA	Intergenic	CpG	-2853	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
21.1238	chr6	155361251	155361750	+	0	NA	Intergenic	Intergenic	-49923	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
4.36519-8	chr6	168609522	168610021	+	0	NA	Intergenic	LTR9B|LTR|ERV1	17426	NR_134590	105378137	Hs.549668	NR_134590	ENSG00000237987	LOC105378137	-	uncharacterized LOC105378137	ncRNA
21.5614	chr12	8123284	8123783	+	0	NA	Intergenic	CpG	-34641	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
0.629839-9	chrX	49028033	49028532	+	0	NA	promoter-TSS (NM_002668)	promoter-TSS (NM_002668)	98	NM_002668	5355	Hs.77422	NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
3.67543	chr18	12947741	12948240	+	0	NA	promoter-TSS (NM_001013437)	promoter-TSS (NM_001013437)	7	NM_031216	81929	Hs.301048	NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
17.8781	chr8	21593410	21593909	+	0	NA	intron (NM_001495, intron 4 of 8)	intron (NM_001495, intron 4 of 8)	52687	NM_001495	2675	Hs.441202	NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
0.491485-18	chr22	39052327	39052826	+	0	NA	promoter-TSS (NM_015373)	promoter-TSS (NM_015373)	58	NM_001291030	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	family with sequence similarity 227 member A	protein-coding
4.11168-3	chr13	102279478	102279977	+	0	NA	intron (NM_001271754, intron 6 of 10)	L1MC1|LINE|L1	137424	NM_001271756	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
0.920515-32	chr14	100413175	100413674	+	0	NA	Intergenic	Intergenic	-24388	NM_001330221	51466	Hs.125867	NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
0.264104-14	chr8	135577344	135577843	+	0	NA	exon (NM_020863, exon 11 of 16)	exon (NM_020863, exon 11 of 16)	-32721	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
6.00326-9	chr5	850547	851046	+	0	NA	5' UTR (NM_024786, exon 1 of 13)	5' UTR (NM_024786, exon 1 of 13)	305	NM_024786	79844	Hs.654874	NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
1.38466-3	chr16	86588562	86589061	+	0	NA	promoter-TSS (NM_001159380)	promoter-TSS (NM_001159380)	-2	NM_001159380	64779	Hs.343627	NM_022764	ENSG00000103248	MTHFSD	-	methenyltetrahydrofolate synthetase domain containing	protein-coding
11.7457-3	chr4	3344102	3344601	+	0	NA	intron (NM_198229, intron 2 of 17)	MIR|SINE|MIR	-27373	NM_198227	6002	Hs.527061	NM_002926	ENSG00000159788	RGS12	-	regulator of G-protein signaling 12	protein-coding
1.94499-3	chr15	73075882	73076381	+	0	NA	promoter-TSS (NM_031284)	promoter-TSS (NM_031284)	-5	NR_023318	83440	Hs.562587	NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
8.99629-6	chr2	32853036	32853535	+	0	NA	5' UTR (NM_017735, exon 1 of 20)	5' UTR (NM_017735, exon 1 of 20)	198	NM_001193509	55622	Hs.468125	NM_017735	ENSG00000018699	TTC27	-	tetratricopeptide repeat domain 27	protein-coding
0.296531-94	chr5	158478328	158478827	+	0	NA	intron (NM_182708, intron 5 of 14)	CpG	48193	NM_001324103	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
0.213631-15	chr2	75327407	75327906	+	0	NA	intron (NM_015727, intron 2 of 3)	L2c|LINE|L2	9717	NR_049796	100846995		NR_049796	ENSG00000263909	MIR5000	-	microRNA 5000	ncRNA
2.22573-15	chr4	83350425	83350924	+	0	NA	promoter-TSS (NM_001292017)	promoter-TSS (NM_001292017)	704	NR_003249	9987	Hs.527105	NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
37.1444-2	chr2	40469407	40469906	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	187788	NM_001112800	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
0.127808-23	chr1	53163528	53164027	+	0	NA	intron (NM_023077, intron 1 of 2)	CpG	261	NM_023077	65260	Hs.349905	NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SELRC1	cytochrome c oxidase assembly factor 7 (putative)	protein-coding
6.8403-4	chr8	11306344	11306843	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	17683	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	family with sequence similarity 167 member A	protein-coding
6.0206-9	chr10	79165342	79165841	+	0	NA	intron (NM_001322832, intron 1 of 27)	intron (NM_001322832, intron 1 of 27)	54961	NR_126365	101929286	Hs.568867	NR_126365		KCNMA1-AS3	-	KCNMA1 antisense RNA 3	ncRNA
2.44888-7	chr3	7561403	7561902	+	0	NA	non-coding (NR_046606, exon 3 of 3)	non-coding (NR_046606, exon 3 of 3)	15319	NR_046606	100873937	Hs.570608	NR_046606	ENSG00000236202	GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
9.06578-4	chr9	37966542	37967041	+	0	NA	intron (NM_003028, intron 3 of 5)	intron (NM_003028, intron 3 of 5)	-62441	NR_024872	92014	Hs.634120	NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
0.510982-26	chr2	200607585	200608084	+	0	NA	Intergenic	Intergenic	108062	NR_034096	348751	Hs.734578	NR_034096	ENSG00000226124	FTCDNL1	FONG	formiminotransferase cyclodeaminase N-terminal like	ncRNA
0.145735-31	chr2	53995093	53995592	+	0	NA	intron (NM_001008708, intron 1 of 2)	intron (NM_001008708, intron 1 of 2)	422	NM_001008708	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding
0.5061-23	chr9	140088889	140089388	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	6025	NM_001128228	286262	Hs.323445	NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
0.540393-18	chr21	35445871	35446370	+	0	NA	intron (NM_032476, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	297	NM_006933	6526	Hs.302742	NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
0.132283-2	chrX	11257325	11257824	+	0	NA	intron (NM_001287242, intron 2 of 12)	intron (NM_001287242, intron 2 of 12)	26521	NM_013423	395	Hs.435291	NM_001174	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
0.241089-13	chr9	45726754	45727253	+	0	NA	Intergenic	SST1|Satellite|centr	-389940	NR_103714	100289124	Hs.567050	NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
4.42493-6	chr14	56215880	56216379	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-16834	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
3.41035-25	chr1	116001327	116001826	+	0	NA	Intergenic	MIRb|SINE|MIR	-120719	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
3.64516-9	chr6	36316953	36317452	+	0	NA	Intergenic	LTR83|LTR|ERVL	-12540	NM_001010903	389384	Hs.162104	NM_001010903	ENSG00000189325	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
2.10419	chr1	198903977	198904476	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	2332	NR_040073	100131234	Hs.711077	NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
1.74574-9	chr1	40451019	40451518	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	30484	NR_109896	84879	Hs.655177	NM_032793	ENSG00000168389	MFSD2A	MCPH15|MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
11.5552-2	chr1	92067745	92068244	+	0	NA	Intergenic	Intergenic	101329	NM_001134420	8317	Hs.533573	NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
3.49692-8	chr13	52529638	52530137	+	0	NA	intron (NM_001330578, intron 8 of 19)	intron (NM_001330578, intron 8 of 19)	55743	NM_000053	540	Hs.492280	NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
1.92465-19	chr4	120793606	120794105	+	0	NA	Intergenic	Intergenic	-66840	NR_121639	100996694	Hs.119926	NR_121639	ENSG00000250392	LOC100996694	-	uncharacterized LOC100996694	ncRNA
1.51195-26	chr3	107681745	107682244	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	79942	NR_015394	285205	Hs.134882	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
34.0894	chr6	43842014	43842513	+	0	NA	Intergenic	Intergenic	-16502	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
0.540393-49	chr21	33765034	33765533	+	0	NA	promoter-TSS (NM_014825)	promoter-TSS (NM_014825)	29	NM_014825	9875	Hs.473611	NM_014825	ENSG00000142207	URB1	C21orf108|NPA1	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding
0.204516-12	chr17	66194969	66195468	+	0	NA	non-coding (NR_027283, exon 1 of 1)	non-coding (NR_027283, exon 1 of 1)	417	NR_027283	440461	Hs.661522	NR_027283		LOC440461	-	Rho GTPase activating protein 27 pseudogene	pseudo
0.0788851-12	chr7	86782492	86782991	+	0	NA	promoter-TSS (NR_136253)	promoter-TSS (NR_136253)	871	NM_021145	9988	Hs.196129	NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
0.32452-8	chr3	49395602	49396101	+	0	NA	TTS (NM_001313941)	TTS (NM_001313941)	182	NM_001329503	2876	Hs.76686	NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
0.0348833-14	chr2	183814237	183814736	+	0	NA	intron (NM_205842, intron 24 of 31)	AluJb|SINE|Alu	-82988	NM_001463	2487	Hs.128453	NM_001463	ENSG00000162998	FRZB	FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ	frizzled-related protein	protein-coding
1.18045-16	chr5	136940284	136940783	+	0	NA	Intergenic	Intergenic	42805	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
7.9588-5	chr9	15422727	15423226	+	0	NA	exon (NM_001039697, exon 1 of 9)	exon (NM_001039697, exon 1 of 9)	194	NM_001039697	6619	Hs.546299	NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
0.118872-7	chr2	100955750	100956249	+	0	NA	Intergenic	L2b|LINE|L2	-16804	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
8.15309-6	chr8	141347511	141348010	+	0	NA	intron (NM_031466, intron 9 of 22)	intron (NM_031466, intron 9 of 22)	120101	NM_001160372	83696	Hs.654911	NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex 9	protein-coding
4.42493-10	chr4	99183023	99183522	+	0	NA	intron (NM_001100429, intron 1 of 13)	intron (NM_001100429, intron 1 of 13)	745	NM_001100426	5910	Hs.132858	NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
0.496351-7	chr8	32020113	32020612	+	0	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	136628	NR_104157	100856811	Hs.97362	NR_104156		NRG1-IT1	-	NRG1 intronic transcript 1	ncRNA
2.26214-8	chr2	64853998	64854497	+	0	NA	Intergenic	Intergenic	19801	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	ncRNA
13.0103-10	chr3	165908162	165908661	+	0	NA	Intergenic	PRIMAX-int|LTR|ERV1	-353151	NR_137636	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
0.301184-33	chr16	85854949	85855448	+	0	NA	Intergenic	Intergenic	21894	NM_001318797	1327	Hs.433419	NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1	cytochrome c oxidase subunit 4I1	protein-coding
0.11441-2	chr19	45582214	45582713	+	0	NA	promoter-TSS (NM_001319055)	promoter-TSS (NM_001319055)	10	NM_001319054	79760	Hs.466919	NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
7.16699-8	chr6	75917964	75918463	+	0	NA	Intergenic	Intergenic	-2590	NM_004370	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|UCMD2	collagen type XII alpha 1 chain	protein-coding
0.48177-11	chr16	58155692	58156191	+	0	NA	intron (NM_013242, intron 1 of 5)	intron (NM_013242, intron 1 of 5)	7355	NM_013242	29105	Hs.532755	NM_013242	ENSG00000070761	CFAP20	C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
0.609802-2	chr8	43303026	43303525	+	0	NA	Intergenic	Intergenic	155690	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
1.14074-2	chr12	68043409	68043908	+	0	NA	exon (NM_006482, exon 2 of 3)	exon (NM_006482, exon 2 of 3)	1146	NM_003583	8445	Hs.173135	NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
5.10042-3	chr4	55250636	55251135	+	0	NA	Intergenic	Intergenic	150758	NM_001347830	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
4.89455-7	chr1	40258254	40258753	+	0	NA	Intergenic	L2c|LINE|L2	3855	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
5.70248-3	chr4	154043966	154044465	+	0	NA	Intergenic	Intergenic	-30055	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
1.19758-12	chr5	7759316	7759815	+	0	NA	intron (NM_020546, intron 16 of 24)	intron (NM_020546, intron 16 of 24)	92038	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
0.9691-16	chr1	168062248	168062747	+	0	NA	intron (NM_001267612, intron 3 of 5)	intron (NM_001267612, intron 3 of 5)	43177	NM_001267612	23432	Hs.271809	NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
0.400052-10	chr5	81640	82139	+	0	NA	Intergenic	Intergenic	-58484	NM_052909	153478	Hs.535800	NM_052909	ENSG00000153404	PLEKHG4B	-	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
4.92144-8	chr12	113554136	113554635	+	0	NA	intron (NM_004658, intron 9 of 21)	intron (NM_004658, intron 9 of 21)	19019	NM_001301202	8437	Hs.528693	NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
4.55932-4	chr2	221080423	221080922	+	0	NA	Intergenic	L3b|LINE|CR1	-309386	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
5.60667-4	chr1	244615087	244615586	+	0	NA	promoter-TSS (NM_001126)	promoter-TSS (NM_001126)	100	NM_001126	159	Hs.498313	NM_001126	ENSG00000035687	ADSS	ADEH|ADSS 2	adenylosuccinate synthase	protein-coding
4.42493-17	chr10	112522059	112522558	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	108354	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
0.788339-24	chr1	173991228	173991727	+	0	NA	Intergenic	CpG	-29267	NM_001300850	149041	Hs.30258	NM_172071	ENSG00000135870	RC3H1	RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
9.74694-5	chr3	195166968	195167467	+	0	NA	Intergenic	Intergenic	-3400	NM_012287	23527	Hs.593373	NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
8.8941-2	chr9	34049106	34049605	+	0	NA	promoter-TSS (NM_018449)	promoter-TSS (NM_018449)	-408	NM_001282529	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
1.31356	chr20	30175618	30176117	+	0	NA	Intergenic	CpG	-14801	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
1.59267-9	chr4	110310365	110310864	+	0	NA	Intergenic	Intergenic	-44257	NM_001042734	10427	Hs.292472	NM_006323	ENSG00000138802	SEC24B	SEC24	SEC24 homolog B, COPII coat complex component	protein-coding
2.89883-5	chr16	85499493	85499992	+	0	NA	Intergenic	Intergenic	-145287	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
6.32644-5	chr18	34389448	34389947	+	0	NA	intron (NM_001330572, intron 2 of 6)	intron (NM_001330572, intron 2 of 6)	-19372	NR_136305	57536	Hs.4045	NM_020776	ENSG00000150477	KIAA1328	-	KIAA1328	protein-coding
0.746879-10	chr7	100806153	100806652	+	0	NA	exon (NM_003378, exon 2 of 2)	exon (NM_003378, exon 2 of 2)	2450	NM_003378	7425	Hs.587325	NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
2.78189-13	chr6	32936330	32936829	+	0	NA	5' UTR (NM_005104, exon 1 of 13).3	5' UTR (NM_005104, exon 1 of 13).3	142	NM_005104	6046	Hs.75243	NM_005104	ENSG00000204256	BRD2	D6S113E|FSH|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
9.87163-20	chr16	67438470	67438969	+	0	NA	intron (NM_013304, intron 3 of 10)	MIRb|SINE|MIR	-11281	NM_015964	51673	Hs.534458	NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
0.127808-7	chr13	25994276	25994775	+	0	NA	intron (NM_016529, intron 1 of 36)	intron (NM_016529, intron 1 of 36)	48376	NM_016529	51761	Hs.444957	NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
1.59894-10	chr2	127178	127677	+	0	NA	Intergenic	SVA_E|Other|Other	-80839	NM_001077710	642273	Hs.8379	NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
0.145735-26	chr1	57284804	57285303	+	0	NA	5' UTR (NM_001004303, exon 1 of 20)	5' UTR (NM_001004303, exon 1 of 20)	316	NM_001004303	199920	Hs.437655	NM_001004303	ENSG00000187889	C1orf168	-	chromosome 1 open reading frame 168	protein-coding
3.55561-6	chrX	68528537	68529036	+	0	NA	Intergenic	MIRc|SINE|MIR	129386	NR_103715	100996279		NR_103715	ENSG00000215162	LINC00269	CXorf62|NCRNA00269	long intergenic non-protein coding RNA 269	ncRNA
7.35182-6	chr1	169093506	169094005	+	0	NA	intron (NM_001677, intron 2 of 5)	MIRb|SINE|MIR	17808	NM_001677	481	Hs.291196	NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
24.5469-3	chr2	26963639	26964138	+	0	NA	Intergenic	Intergenic	-23254	NM_017877	54978	Hs.1594	NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
0.467237-23	chr4	74964656	74965155	+	0	NA	promoter-TSS (NM_002089)	promoter-TSS (NM_002089)	92	NM_002089	2920	Hs.75765	NM_002089	ENSG00000081041	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	C-X-C motif chemokine ligand 2	protein-coding
16.8194	chrX	7607968	7608467	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-202086	NM_013452	26609	Hs.278906	NM_013452	ENSG00000182583	VCX	VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1	variable charge, X-linked	protein-coding
0.0744648-17	chr14	26870366	26870865	+	0	NA	Intergenic	Intergenic	196345	NM_006491	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
2.93282-14	chr15	74243304	74243803	+	0	NA	intron (NM_005576, intron 6 of 6)	intron (NM_005576, intron 6 of 6)	-22964	NR_040069	100287616	Hs.599785	NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
23.6452	chr18	72922301	72922800	+	0	NA	promoter-TSS (NM_005786)	promoter-TSS (NM_005786)	-160	NM_005786	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
3.96856-8	chr10	101419195	101419694	+	0	NA	intron (NM_020354, intron 1 of 12)	CpG	181	NM_020354	57089	Hs.28326	NM_020354	ENSG00000198018	ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
19.8297-4	chr17	79049981	79050480	+	0	NA	intron (NM_017451, intron 3 of 14)	intron (NM_017451, intron 3 of 14)	41283	NM_006340	10458	Hs.128316	NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1 associated protein 2	protein-coding
2.9073-5	chr16	46782586	46783085	+	0	NA	promoter-TSS (NM_182493)	promoter-TSS (NM_182493)	-614	NM_182493	91807	Hs.130465	NM_182493	ENSG00000140795	MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding
7.05534-8	chr12	46384783	46385282	+	0	NA	promoter-TSS (NM_004719)	promoter-TSS (NM_004719)	-631	NM_004719	9169	Hs.210367	NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
0.241089	chr13	93007426	93007925	+	0	NA	intron (NM_004466, intron 7 of 7)	L2|LINE|L2	-3215	NR_120382	100873970	Hs.567269	NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
0.132283-3	chr7	67650594	67651093	+	0	NA	Intergenic	Intergenic	165603	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
1.89767-12	chr8	53167395	53167894	+	0	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	60722	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
1.83759-6	chr7	28893687	28894186	+	0	NA	Intergenic	CpG	104093	NM_014817	9865	Hs.744120	NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
3.44862-15	chr2	78757843	78758342	+	0	NA	Intergenic	Intergenic	-14565	NR_136311	105374820	Hs.570225	NR_136311		LOC105374820	-	uncharacterized LOC105374820	ncRNA
5.22879-15	chr5	80538775	80539274	+	0	NA	intron (NR_034122, intron 3 of 3)	intron (NR_034122, intron 3 of 3)	9885	NM_001099735	1160	Hs.80691	NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
2.28413-5	chr11	120187473	120187972	+	0	NA	intron (NM_014352, intron 11 of 12)	intron (NM_014352, intron 11 of 12)	-8116	NM_174926	219902	Hs.643516	NM_174926	ENSG00000181264	TMEM136	-	transmembrane protein 136	protein-coding
1.51195	chr3	188759205	188759704	+	0	NA	Intergenic	Intergenic	-94026	NR_046873	100874043	Hs.616287	NR_046873	ENSG00000234076	TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
26.0033	chr18	43003653	43004152	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	83099	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
5.157-5	chr3	77848308	77848807	+	0	NA	Intergenic	Intergenic	701394	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
0.655015-10	chr1	245317722	245318221	+	0	NA	promoter-TSS (NM_018012)	promoter-TSS (NM_018012)	-316	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
0.649968-34	chr3	62859619	62860118	+	0	NA	intron (NM_183394, intron 1 of 27)	CpG	1196	NM_003716	8618	Hs.654933	NM_003716	ENSG00000163618	CADPS	CADPS1|CAPS|CAPS1|UNC-31	calcium dependent secretion activator	protein-coding
7.01147-13	chr1	224536867	224537366	+	0	NA	Intergenic	SVA_B|Other|Other	-7397	NR_102347	29097	Hs.445890	NM_014184	ENSG00000143771	CNIH4	CNIH-4|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding
16.3451-4	chr3	107611900	107612399	+	0	NA	intron (NR_015394, intron 1 of 2)	intron (NR_015394, intron 1 of 2)	10097	NR_015394	285205	Hs.134882	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
0.79355-11	chr1	229253564	229254063	+	0	NA	Intergenic	Intergenic	56735	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
5.81699	chr17	1811931	1812430	+	0	NA	Intergenic	Intergenic	78907	NM_002945	6117	Hs.461925	NM_002945	ENSG00000132383	RPA1	HSSB|MST075|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
11.0679	chr1	226189643	226190142	+	0	NA	Intergenic	Intergenic	-2826	NM_152608	163859	Hs.520192	NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
0.231917-13	chr7	44122046	44122545	+	0	NA	promoter-TSS (NM_001284331)	promoter-TSS (NM_001284331)	-156	NM_001284330	27434	Hs.596982	NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
2.35824-11	chrX	106919966	106920465	+	0	NA	Intergenic	Intergenic	39496	NM_001015881	1831	Hs.522074	NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
5.67031	chr7	36850002	36850501	+	0	NA	Intergenic	MIR3|SINE|MIR	-86097	NM_001177506	313	Hs.488007	NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
12.0971-2	chr16	88839216	88839715	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	12163	NM_001142864	9780	Hs.377001	NM_001142864	ENSG00000103335	PIEZO1	DHS|FAM38A|LMPH3|Mib	piezo type mechanosensitive ion channel component 1	protein-coding
0.0921731-27	chr10	74035138	74035637	+	0	NA	3' UTR (NM_019058, exon 3 of 3)	3' UTR (NM_019058, exon 3 of 3)	1710	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
4.58421-5	chr4	185655144	185655643	+	0	NA	promoter-TSS (NR_104593)	promoter-TSS (NR_104593)	-107	NM_024629	79682	Hs.575032	NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
0.296531-141	chr11	47237802	47238301	+	0	NA	intron (NM_000107, intron 2 of 9)	intron (NM_000107, intron 2 of 9)	1558	NM_001300734	1643	Hs.700338	NM_000107	ENSG00000134574	DDB2	DDBB|UV-DDB2|XPE	damage specific DNA binding protein 2	protein-coding
3.76751-7	chr6	7726627	7727126	+	0	NA	5' UTR (NM_001718, exon 1 of 7)	5' UTR (NM_001718, exon 1 of 7)	544	NM_001718	654	Hs.285671	NM_001718	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
19.8297-6	chr22	21556334	21556833	+	0	NA	Intergenic	Intergenic	35391	NR_108107	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B (non-protein coding)	ncRNA
2.18963-18	chr6	15384956	15385455	+	0	NA	intron (NM_004973, intron 2 of 17)	L2a|LINE|L2	136119	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
1.20904-23	chr3	180196476	180196975	+	0	NA	Intergenic	LTR33|LTR|ERVL	64764	NR_132416	100505609	Hs.518427	NR_132416	ENSG00000241696	LINC02053	-	long intergenic non-protein coding RNA 2053	ncRNA
3.22393-20	chr5	21542850	21543349	+	0	NA	intron (NR_027026, intron 4 of 4)	L1PA12|LINE|L1	83510	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo
0.329203	chr8	93751808	93752307	+	0	NA	intron (NR_046114, intron 1 of 2)	intron (NR_046114, intron 1 of 2)	46231	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
3.31614-9	chr10	51544291	51544790	+	0	NA	intron (NM_001290117, intron 6 of 6)	MER57B2|LTR|ERV1	-5013	NM_138634	4477	Hs.255462	NM_002443	ENSG00000263639	MSMB	HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94	microseminoprotein beta	protein-coding
7.47147-22	chr7	100493467	100493966	+	0	NA	promoter-TSS (NM_015831)	promoter-TSS (NM_015831)	38	NM_001302622	43	Hs.154495	NM_000665	ENSG00000087085	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Cartwright blood group)	protein-coding
1.41463-19	chr5	21620	22119	+	0	NA	Intergenic	Intergenic	-118504	NM_052909	153478	Hs.535800	NM_052909	ENSG00000153404	PLEKHG4B	-	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
28.9279	chr15	93796756	93797255	+	0	NA	Intergenic	Intergenic	-164562	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
1.7134-5	chr11	121526305	121527060	+	0	NA	Intergenic	Intergenic	203770	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
3.16053-5	chr1	27049828	27050327	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	27555	NM_006015	8289	Hs.468972	NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
4.58421	chr3	196700774	196701273	+	0	NA	Intergenic	SVA_D|Other|Other	-5281	NM_025163	80235	Hs.518403	NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
8.47712-8	chr10	119659776	119660275	+	0	NA	Intergenic	Intergenic	146089	NM_014904	22841	Hs.173656	NM_014904	ENSG00000107560	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2	protein-coding
10.8355-2	chr17	71973253	71973752	+	0	NA	Intergenic	Intergenic	-148826	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
1.6813-2	chr14	62024895	62025394	+	0	NA	intron (NR_110417, intron 3 of 3)	intron (NR_110417, intron 3 of 3)	11768	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
1.17475-18	chr5	116822404	116822903	+	0	NA	intron (NR_046089, intron 3 of 5)	intron (NR_046089, intron 3 of 5)	71445	NR_046089	728342	Hs.434420	NR_046089		LINC00992	-	long intergenic non-protein coding RNA 992	ncRNA
26.5758-3	chr3	175366998	175367497	+	0	NA	intron (NM_207015, intron 11 of 13)	MLT1B|LTR|ERVL-MaLR	126874	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
4.19075-5	chr7	54512375	54512874	+	0	NA	Intergenic	SVA_A|Other|Other	-97394	NM_001301009	222008	Hs.335933	NM_182546	ENSG00000170419	VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
0.0392635-5	chr11	130060400	130060899	+	0	NA	intron (NM_021978, intron 7 of 18)	intron (NM_021978, intron 7 of 18)	30967	NM_021978	6768	Hs.504315	NM_021978	ENSG00000149418	ST14	ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14	protein-coding
0.925886-20	chr7	72971293	72971792	+	0	NA	promoter-TSS (NR_036682)	promoter-TSS (NR_036682)	60	NR_036682	9275	Hs.647051	NM_001707	ENSG00000106635	BCL7B	-	BCL tumor suppressor 7B	protein-coding
0.888424-9	chr15	27018546	27019045	+	0	NA	promoter-TSS (NM_001278631)	promoter-TSS (NM_001278631)	140	NM_021912	2562	Hs.302352	NM_000814	ENSG00000166206	GABRB3	ECA5|EIEE43	gamma-aminobutyric acid type A receptor beta3 subunit	protein-coding
3.34419-4	chr8	142401814	142402313	+	0	NA	Intergenic	CpG	-24698	NM_005293	2843	Hs.152432	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
9.31814-3	chr17	20588913	20589412	+	0	NA	Intergenic	SVA_D|Other|Other	-26597	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
1.35489-11	chr3	106959311	106959810	+	0	NA	promoter-TSS (NR_028303)	promoter-TSS (NR_028303)	21	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	DUBR	DUM|LINC00883|LINC0883	DPPA2 upstream binding RNA	ncRNA
6.59556-5	chr4	168140189	168140688	+	0	NA	intron (NM_001204352, intron 2 of 11)	intron (NM_001204352, intron 2 of 11)	15139	NM_001204353	50859	Hs.481133	NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3	protein-coding
0.438316-21	chr4	125347315	125347814	+	0	NA	Intergenic	Intergenic	132025	NR_110838	101927087	Hs.518966	NR_110838	ENSG00000261083	LOC101927087	-	uncharacterized LOC101927087	ncRNA
1.45087-17	chr1	31439462	31439961	+	0	NA	intron (NM_001020658, intron 12 of 21)	intron (NM_001020658, intron 12 of 21)	1373	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
0.76756-24	chr1	109370649	109371148	+	0	NA	intron (NR_049760, intron 9 of 13)	intron (NR_049760, intron 9 of 13)	28828	NM_152763	254268	Hs.729441	NM_152763	ENSG00000162641	AKNAD1	C1orf62	AKNA domain containing 1	protein-coding
1.34896-14	chr3	136471981	136472480	+	0	NA	promoter-TSS (NM_005862)	promoter-TSS (NM_005862)	-985	NM_005862	10274	Hs.412586	NM_005862	ENSG00000118007	STAG1	SA1|SCC3A	stromal antigen 1	protein-coding
11.296	chr7	55208292	55208791	+	0	NA	intron (NM_001346900, intron 1 of 27)	intron (NM_001346900, intron 1 of 27)	31031	NM_001346900	1956	Hs.488293	NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
0.218195-7	chr6	100449690	100450189	+	0	NA	intron (NR_038384, intron 2 of 2)	intron (NR_038384, intron 2 of 2)	-7825	NM_032503	84539	Hs.591342	NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
5.40608-9	chr1	13985099	13985598	+	0	NA	Intergenic	SVA_D|Other|Other	-41387	NM_001135610	7799	Hs.371823	NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
0.25028-20	chr16	81444180	81444679	+	0	NA	Intergenic	Intergenic	25806	NR_039871	100616150		NR_039871	ENSG00000261609	MIR4720	-	microRNA 4720	ncRNA
5.49751-2	chr2	16152689	16153188	+	0	NA	Intergenic	Intergenic	-37611	NR_126559	104797537	Hs.435748	NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3 (non-protein coding)	ncRNA
2.26214-3	chr20	18547733	18548232	+	0	NA	promoter-TSS (NR_015432)	promoter-TSS (NR_015432)	-91	NR_015432	388789	Hs.349092	NR_015432	ENSG00000232388	LINC00493	-	long intergenic non-protein coding RNA 493	ncRNA
4.01209-12	chr3	174719478	174719977	+	0	NA	intron (NM_207015, intron 1 of 13)	Tigger4|DNA|TcMar-Tigger	113305	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
3.59519-5	chr15	73925560	73926059	+	0	NA	promoter-TSS (NM_012428)	promoter-TSS (NM_012428)	-56	NM_001161363	27020	Hs.744867	NM_012428	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
6.00326-3	chrX	89468313	89468812	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	291622	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	TGFB induced factor homeobox 2 like, X-linked	protein-coding
3.94695	chr3	71774743	71775242	+	0	NA	promoter-TSS (NM_001134651)	promoter-TSS (NM_001134651)	-466	NM_001134651	317649	Hs.581355	NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
0.254883-19	chr2	27485651	27486150	+	0	NA	promoter-TSS (NM_003459)	promoter-TSS (NM_003459)	60	NM_003459	7781	Hs.467981	NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
0.51587-3	chr11	66610377	66610876	+	0	NA	promoter-TSS (NM_005133)	promoter-TSS (NM_005133)	-257	NM_001032279	9986	Hs.654972	NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
1.37272-6	chr12	32259215	32260203	+	0	NA	promoter-TSS (NM_001714)	promoter-TSS (NM_001714)	-476	NM_001714	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
4.52225-10	chr4	115485836	115486335	+	0	NA	Intergenic	Intergenic	-33473	NM_001322113	7368	Hs.144197	NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
2.32102-9	chr7	102328741	102329240	+	0	NA	Intergenic	Intergenic	-16814	NM_032959	246721	Hs.610255	NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
0.25028-24	chr2	12154539	12155038	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	7546	NR_110198	100506457	Hs.197824	NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
0.0392635-30	chr11	71107382	71107881	+	0	NA	Intergenic	LTR33|LTR|ERVL	26769	NR_038862	399923	Hs.128191	NM_001001680	ENSG00000172900	FLJ42102	-	uncharacterized LOC399923	ncRNA
0.0833099-49	chr3	4345020	4345519	+	0	NA	intron (NM_001320678, intron 1 of 1)	CpG	281	NM_001243723	6419	Hs.475300	NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
12.4489-2	chr8	65553974	65554473	+	0	NA	intron (NM_004820, intron 1 of 5)	intron (NM_004820, intron 1 of 5)	61428	NM_152414	27319	Hs.388788	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|Beta3a|CAGL85|TNRC20	basic helix-loop-helix family member e22	protein-coding
7.16699-18	chr19	45414266	45414765	+	0	NA	Intergenic	Intergenic	-2989	NM_001321065	341	Hs.110675	NM_001645	ENSG00000130208	APOC1	Apo-CI|ApoC-I|apo-CIB|apoC-IB	apolipoprotein C1	protein-coding
33.439-2	chr3	145079479	145079978	+	0	NA	Intergenic	Intergenic	799554	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
1.85087-16	chr2	85715640	85716139	+	0	NA	Intergenic	SVA_D|Other|Other	50120	NR_038942	100630918	Hs.66049	NR_038942		PARTICL	PARTICLE	promoter of MAT2A antisense radiation-induced circulating long non-coding RNA	ncRNA
0.109954-10	chr16	88523197	88523696	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	3432	NM_153813	161882	Hs.632218	NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
12.0204	chr19	22604978	22605477	+	0	NA	promoter-TSS (NM_001098626)	promoter-TSS (NM_001098626)	-79	NM_001098626	148198	Hs.667355	NM_001098626	ENSG00000197360	ZNF98	F7175|ZNF739	zinc finger protein 98	protein-coding
8.66461-4	chr18	54818014	54818513	+	0	NA	TTS (NM_001257964)	TTS (NM_001257964)	3970	NM_001257964	284257	Hs.127882	NM_001257964	ENSG00000228075	BOD1L2	BOD1P|FAM44C	biorientation of chromosomes in cell division 1 like 2	protein-coding
3.59519-9	chr4	82842718	82843217	+	0	NA	Intergenic	LTR33|LTR|ERVL	-449885	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
1.21478-8	chr3	44037112	44037611	+	0	NA	Intergenic	CpG	-118343	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
36.8825	chr5	22652151	22652650	+	0	NA	intron (NM_004061, intron 1 of 14)	intron (NM_004061, intron 1 of 14)	201331	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
3.01899-10	chr12	111806471	111806970	+	0	NA	5' UTR (NM_001177997, exon 1 of 3)	5' UTR (NM_001177997, exon 1 of 3)	205	NM_001177996	144717	Hs.173088	NM_144671	ENSG00000198324	FAM109A	IPIP27A|SES1	family with sequence similarity 109 member A	protein-coding
6.28932	chr7	915766	916265	+	0	NA	promoter-TSS (NM_015949)	promoter-TSS (NM_015949)	-176	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|CGI-20|TRC35	golgi to ER traffic protein 4	protein-coding
14.3063-3	chr2	50623023	50623522	+	0	NA	intron (NM_001135659, intron 18 of 23)	Charlie20a|DNA|hAT-Charlie	-48378	NM_138735	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
2.34331-10	chr5	172482601	172483100	+	0	NA	promoter-TSS (NM_001168394)	promoter-TSS (NM_001168394)	-505	NM_001168393	153222	Hs.484195	NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
1.99283-5	chr2	207139203	207139702	+	0	NA	promoter-TSS (NM_001285549)	promoter-TSS (NM_001285549)	87	NM_020923	57683	Hs.110489	NM_020923	ENSG00000204186	ZDBF2	-	zinc finger DBF-type containing 2	protein-coding
12.3882-2	chr2	11893457	11893956	+	0	NA	intron (NM_145693, intron 1 of 19)	intron (NM_145693, intron 1 of 19)	6984	NM_145693	23175	Hs.467740	NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
21.5802	chr22	29446209	29446708	+	0	NA	exon (NM_001206998, exon 8 of 9)	exon (NM_001206998, exon 8 of 9)	11449	NM_015370	25770	Hs.50891	NM_015370	ENSG00000100249	C22orf31	HS747E2A|bK747E2.1	chromosome 22 open reading frame 31	protein-coding
12.6841	chr3	122692633	122693132	+	0	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	2099	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
7.85156-2	chr16	85587582	85588081	+	0	NA	Intergenic	CpG	-57198	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
1.84422-10	chr7	36834210	36834709	+	0	NA	Intergenic	Intergenic	-70305	NM_001177506	313	Hs.488007	NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
8.44664-2	chr1	73595460	73595959	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-176144	NR_110676	101927295	Hs.436589	NR_110676	ENSG00000233973	LINC01360	-	long intergenic non-protein coding RNA 1360	ncRNA
1.29011-23	chr7	73062071	73062570	+	0	NA	Intergenic	CpG	-19854	NM_001077621	155382	Hs.647037	NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D, ESCRT-I subunit	protein-coding
0.376307-25	chr6	151038483	151038982	+	0	NA	intron (NM_001329800, intron 1 of 15)	intron (NM_001329800, intron 1 of 15)	-3337	NM_001329803	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
3.43902-9	chr1	234891130	234891629	+	0	NA	Intergenic	Intergenic	31590	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
17.8781-5	chr14	96698006	96698505	+	0	NA	intron (NM_000623, intron 1 of 2)	intron (NM_000623, intron 1 of 2)	-24292	NM_000710	623	Hs.525572	NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
4.21361-4	chr2	31361117	31361616	+	0	NA	5' UTR (NM_001329096, exon 1 of 17)	5' UTR (NM_001329096, exon 1 of 17)	226	NM_001329095	79623	Hs.468058	NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
6.9897-11	chr7	134354095	134354594	+	0	NA	intron (NM_001724, intron 2 of 2)	intron (NM_001724, intron 2 of 2)	22813	NM_199186	669	Hs.198365	NM_001724	ENSG00000172331	BPGM	DPGM	bisphosphoglycerate mutase	protein-coding
21.2436	chr2	185992915	185993414	+	0	NA	Intergenic	MER70A|LTR|ERVL	38635	NR_136319	105373782	Hs.128285	NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
3.10691-6	chr12	133199978	133200477	+	0	NA	TTS (NM_006231)	TTS (NM_006231)	4861	NM_170682	22953	Hs.258580	NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
22.4489	chr11	35026587	35027086	+	0	NA	Intergenic	Intergenic	63452	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
0.624821-23	chr6	20751425	20751924	+	0	NA	intron (NM_017774, intron 6 of 15)	MER3|DNA|hAT-Charlie	216986	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
13.536	chr15	86372047	86372546	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	3430	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
3.9794-4	chr15	84489956	84490455	+	0	NA	intron (NM_001301110, intron 6 of 29)	SVA_D|Other|Other	167367	NM_001301110	57188	Hs.459162	NM_207517	ENSG00000156218	ADAMTSL3	ADAMTSL-3	ADAMTS like 3	protein-coding
3.99027-18	chr10	102772651	102773150	+	0	NA	intron (NM_001195263, intron 11 of 16)	intron (NM_001195263, intron 11 of 16)	10646	NM_001318101	84445	Hs.523221	NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
1.59894-21	chr19	1605394	1605893	+	0	NA	promoter-TSS (NM_006830)	promoter-TSS (NM_006830)	-160	NM_006830	10975	Hs.8372	NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
0.296531-70	chr3	197463416	197463915	+	0	NA	5' UTR (NM_014687, exon 1 of 20)	5' UTR (NM_014687, exon 1 of 20)	132	NM_014687	9711	Hs.478868	NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	RUN and cysteine rich domain containing beclin 1 interacting protein	protein-coding
1.20904-21	chr4	3882169	3882668	+	0	NA	Intergenic	Intergenic	74737	NR_130740	348926	Hs.591720	NR_024253	ENSG00000251669	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
9.62574-21	chr1	38082003	38082502	+	0	NA	exon (NM_001242910, exon 4 of 7)	exon (NM_001242910, exon 4 of 7)	18343	NM_001242909	284654	Hs.135015	NM_173640	ENSG00000169218	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
2.96709-3	chr2	182579695	182580194	+	0	NA	Intergenic	Intergenic	-34552	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
10.2136	chr11	85629672	85630171	+	0	NA	intron (NM_173556, intron 11 of 11)	MER4C|LTR|ERV1	63777	NM_001286159	220047	Hs.567774	NM_173556	ENSG00000150676	CCDC83	CT148|HSD9	coiled-coil domain containing 83	protein-coding
1.04025-10	chr6	166756219	166756718	+	0	NA	promoter-TSS (NM_145169)	promoter-TSS (NM_145169)	349	NR_040022	100289495		NR_040022		LOC100289495	-	uncharacterized LOC100289495	ncRNA
2.01349-4	chr15	72410122	72410885	+	0	NA	promoter-TSS (NM_145204)	promoter-TSS (NM_145204)	-63	NM_006901	4649	Hs.513000	NM_006901	ENSG00000066933	MYO9A	-	myosin IXA	protein-coding
0.76756-17	chr16	8617632	8618131	+	0	NA	Intergenic	Intergenic	2126	NM_001290095	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
3.5164-9	chr17	46124938	46125437	+	0	NA	promoter-TSS (NM_003204)	promoter-TSS (NM_003204)	-480	NM_001330261	4779	Hs.514284	NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF1|TCF11	nuclear factor, erythroid 2 like 1	protein-coding
3.45823-5	chr9	135544817	135546014	+	0	NA	promoter-TSS (NM_012204)	promoter-TSS (NM_012204)	-7	NM_012204	9329	Hs.22302	NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
6.05548	chr4	159591953	159592452	+	0	NA	intron (NR_077234, intron 1 of 1)	intron (NR_077234, intron 1 of 1)	1000	NM_001008393	201725	Hs.380920	NM_001008393	ENSG00000205208	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
10.2045	chr8	142741130	142741629	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	126295	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
1.42065-9	chr13	25115568	25116067	+	0	NA	Intergenic	CpG	-28869	NM_006437	143	Hs.744855	NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
1.85087-13	chr10	120966296	120966795	+	0	NA	promoter-TSS (NM_005308)	promoter-TSS (NM_005308)	-652	NM_005308	2869	Hs.524625	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding
7.93174-9	chr1	214177236	214177735	+	0	NA	intron (NM_001270616, intron 2 of 4)	intron (NM_001270616, intron 2 of 4)	15641	NM_002763	5629	Hs.741808	NM_002763	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding
9.50782-11	chr9	21996153	21996652	+	0	NA	intron (NR_047542, intron 1 of 4)	L2a|LINE|L2	1612	NR_047540	100048912	Hs.493614	NR_003529	ENSG00000240498	CDKN2B-AS1	ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS	CDKN2B antisense RNA 1	ncRNA
1.85087-7	chr18	13726365	13726864	+	0	NA	promoter-TSS (NM_001098801)	promoter-TSS (NM_001098801)	-23	NM_152352	125228	Hs.13034	NM_152352	ENSG00000177150	FAM210A	C18orf19|HsT2329	family with sequence similarity 210 member A	protein-coding
4.86782-14	chr21	27254072	27254571	+	0	NA	intron (NM_001136131, intron 15 of 15)	intron (NM_001136131, intron 15 of 15)	-146356	NM_001320266	522	Hs.246310	NM_001685	ENSG00000154723	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6	protein-coding
3.95774-2	chr12	116970932	116971431	+	0	NA	promoter-TSS (NR_027345)	promoter-TSS (NR_027345)	-46	NR_027345	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
21.2033	chr7	138574698	138575197	+	0	NA	intron (NM_020910, intron 10 of 19)	intron (NM_020910, intron 10 of 19)	91117	NM_001164665	57670	Hs.605380	NM_020910	ENSG00000122778	KIAA1549	-	KIAA1549	protein-coding
2.58848-6	chr17	40074247	40074746	+	0	NA	intron (NM_001303275, intron 1 of 27)	CpG	776	NM_198830	47	Hs.387567	NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
2.73273-6	chr2	46608458	46608957	+	0	NA	intron (NM_001430, intron 12 of 15)	intron (NM_001430, intron 12 of 15)	-47622	NR_103805	101805491	Hs.304781	NR_103805	ENSG00000187600	LOC101805491	-	uncharacterized LOC101805491	ncRNA
0.925886-13	chr11	5829571	5830070	+	0	NA	Intergenic	HERVI-int|LTR|ERV1	-11746	NM_001005174	390077	Hs.553737	NM_001005174	ENSG00000180988	OR52N2	OR11-57	olfactory receptor family 52 subfamily N member 2	protein-coding
0.419142-24	chr3	134656481	134656980	+	0	NA	intron (NM_004441, intron 2 of 15)	intron (NM_004441, intron 2 of 15)	142631	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
12.2475-2	chr7	82896312	82896811	+	0	NA	Intergenic	Intergenic	-104364	NM_033026	27445	Hs.12376	NM_014510	ENSG00000186472	PCLO	ACZ|PCH3	piccolo presynaptic cytomatrix protein	protein-coding
2.52588-21	chr6	31685277	31685776	+	0	NA	TTS (NM_025261)	TTS (NM_025261)	2393	NM_021246	58530	Hs.591792	NM_021246	ENSG00000244355	LY6G6D	C6orf23|G6D|LY6-D|MEGT1|NG25	lymphocyte antigen 6 complex, locus G6D	protein-coding
0.649968-6	chr2	70417223	70417722	+	0	NA	intron (NM_017880, intron 1 of 9)	intron (NM_017880, intron 1 of 9)	679	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
13.2606-2	chr11	95523961	95524460	+	0	NA	intron (NM_014679, intron 1 of 10)	intron (NM_014679, intron 1 of 10)	585	NM_014679	9702	Hs.101014	NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
0.644927-2	chr7	149082032	149082531	+	0	NA	Intergenic	HAL1|LINE|L1	75772	NM_015694	27153	Hs.38512	NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
1.27844-10	chr5	6368478	6368977	+	0	NA	Intergenic	Intergenic	9912	NM_032286	84246	Hs.13885	NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
4.74955	chr1	178990919	178991418	+	0	NA	Intergenic	Intergenic	-3771	NM_001324310	9917	Hs.5737	NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B, glycosaminoglycan xylosylkinase	protein-coding
1.39063-7	chr16	48151299	48151798	+	0	NA	intron (NM_033226, intron 11 of 28)	intron (NM_033226, intron 11 of 28)	29133	NM_033226	94160	Hs.410111	NM_033226	ENSG00000140798	ABCC12	MRP9	ATP binding cassette subfamily C member 12	protein-coding
0.736576-37	chr20	2632350	2633225	+	0	NA	promoter-TSS (NR_031699)	promoter-TSS (NR_031699)	-391	NR_027700	10528	Hs.376064	NM_006392	ENSG00000101361	NOP56	NOL5A|SCA36	NOP56 ribonucleoprotein	protein-coding
9.20819-11	chr16	66642265	66642764	+	0	NA	intron (NM_144601, intron 3 of 5)	intron (NM_144601, intron 3 of 5)	3880	NR_037619	123920	Hs.298198	NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
12.7327	chrX	7208459	7209396	+	0	NA	intron (NM_001320754, intron 6 of 9)	intron (NM_001320754, intron 6 of 9)	38413	NM_001320754	412	Hs.522578	NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase (microsomal), isozyme S	protein-coding
5.867	chr16	28961940	28962439	+	0	NA	promoter-TSS (NM_032815)	promoter-TSS (NM_032815)	-129	NM_032815	84901	Hs.513470	NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T-cells 2 interacting protein	protein-coding
12.4336-2	chr1	181483457	181483956	+	0	NA	intron (NM_001205294, intron 3 of 45)	intron (NM_001205294, intron 3 of 45)	31020	NM_000721	777	Hs.437444	NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
0.520764-2	chr2	183251701	183252200	+	0	NA	intron (NM_001003683, intron 2 of 14)	SVA_C|Other|Other	39825	NM_001258313	5136	Hs.191046	NM_005019	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A	protein-coding
1.61151-8	chr13	77899928	77900427	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	1000	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|Phr	MYC binding protein 2, E3 ubiquitin protein ligase	protein-coding
0.209071-16	chr6	86354846	86355345	+	0	NA	Intergenic	L2|LINE|L2	-2052	NM_006372	10492	Hs.571177	NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
3.03644	chr10	93668531	93669030	+	0	NA	5' UTR (NM_152429, exon 2 of 2)	5' UTR (NM_152429, exon 2 of 2)	478	NM_152429	143282	Hs.466120	NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
12.8067	chr17	17280785	17281284	+	0	NA	Intergenic	Intergenic	74354	NM_020201	56953	Hs.513977	NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
1.74574-2	chrUn_gl000214	127003	127502	+	0	NA	NA	MER21B|LTR|ERVL	NA	NA								
3.18759-5	chr12	70132571	70133070	+	0	NA	promoter-TSS (NM_175625)	promoter-TSS (NM_175625)	-350	NM_175625	117177	Hs.258209	NM_022456	ENSG00000127328	RAB3IP	RABIN3|RABIN8	RAB3A interacting protein	protein-coding
0.2365-23	chr8	142184947	142185446	+	0	NA	intron (NM_014957, intron 13 of 22)	intron (NM_014957, intron 13 of 22)	46476	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
1.92465-4	chr6	73890390	73890889	+	0	NA	intron (NM_001160133, intron 12 of 14)	intron (NM_001160133, intron 12 of 14)	-37402	NR_046621	100873997	Hs.741819	NR_046621	ENSG00000229154	KCNQ5-AS1	-	KCNQ5 antisense RNA 1	ncRNA
2.44888-10	chr2	91816295	91816794	+	0	NA	Intergenic	Intergenic	31431	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
2.54925-8	chr7	48128298	48128797	+	0	NA	promoter-TSS (NM_003364)	promoter-TSS (NM_003364)	-190	NM_001287429	7378	Hs.488240	NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
0.496351-19	chr6	167763403	167763902	+	0	NA	Intergenic	Intergenic	25078	NM_031949	83887	Hs.520554	NM_031949	ENSG00000120440	TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase like 2	protein-coding
0.404816-3	chr9	79319407	79319906	+	0	NA	intron (NM_001308047, intron 8 of 17)	intron (NM_001308047, intron 8 of 17)	-12325	NM_001308050	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding
0.338583-20	chr14	96733671	96734170	+	0	NA	Intergenic	Intergenic	11373	NM_000710	623	Hs.525572	NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
1.66216-2	chr2	220435186	220435685	+	0	NA	exon (NM_001173408, exon 1 of 9)	exon (NM_001173408, exon 1 of 9)	833	NM_001173408	23363	Hs.526594	NM_015311	ENSG00000124006	OBSL1	-	obscurin like 1	protein-coding
54.5717	chr18	73924888	73925387	+	0	NA	Intergenic	Intergenic	90184	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
7.07744-6	chr6	45982732	45983231	+	0	NA	intron (NM_001114086, intron 1 of 5)	CpG	645	NM_016929	53405	Hs.485489	NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
0.371573-4	chr10	19330108	19330607	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-7343	NM_001142308	340895	Hs.646734	NM_001142308	ENSG00000204740	MALRD1	C10orf112|DIET1|bA265G8.2	MAM and LDL receptor class A domain containing 1	protein-coding
11.1634-4	chr12	110462366	110462865	+	0	NA	intron (NM_033121, intron 7 of 14)	Tigger14a|DNA|TcMar-Tigger	25380	NM_033121	88455	Hs.528703	NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
0.0966115-19	chr4	82272723	82273222	+	0	NA	Intergenic	Intergenic	120110	NM_001300736	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
3.63512-25	chr6	27793911	27794410	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	2257	NM_021968	8363	Hs.278483	NM_021968	ENSG00000197238	HIST1H4J	H4/e|H4F2iv|H4FE|dJ160A22.2	histone cluster 1 H4 family member j	protein-coding
0.123337-11	chr1	177749121	177749620	+	0	NA	Intergenic	Intergenic	79711	NR_110722	101928778	Hs.573792	NR_110722	ENSG00000236720	LINC01741	-	long intergenic non-protein coding RNA 1741	ncRNA
12.5104	chr2	153504014	153504513	+	0	NA	intron (NM_052905, intron 25 of 25)	intron (NM_052905, intron 25 of 25)	69712	NM_017892	55660	Hs.643580	NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
1.18615-9	chr7	6311137	6311636	+	0	NA	intron (NM_004227, intron 1 of 12)	CpG	856	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
0.0877392-3	chr3	147663903	147664402	+	0	NA	Intergenic	Intergenic	-131794	NR_134937	100507461	Hs.112623	NR_134937	ENSG00000241131	LINC02032	-	long intergenic non-protein coding RNA 2032	ncRNA
0.305841-18	chr18	58176632	58177131	+	0	NA	Intergenic	MIRb|SINE|MIR	-136880	NM_005912	4160	Hs.532833	NM_005912	ENSG00000166603	MC4R	-	melanocortin 4 receptor	protein-coding
1.9044-10	chr9	126132993	126133492	+	0	NA	exon (NM_173689, exon 7 of 13)	exon (NM_173689, exon 7 of 13)	2184	NR_104603	286204	Hs.568340	NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs 2, cell polarity complex component	protein-coding
4.55932-6	chr22	23455143	23455642	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	28849	NM_014433	27156	Hs.526920	NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
1.77178-3	chr12	101673461	101673960	+	0	NA	promoter-TSS (NM_014503)	promoter-TSS (NM_014503)	-195	NM_014503	27340	Hs.295732	NM_014503	ENSG00000120800	UTP20	1A6/DRIM|DRIM	UTP20, small subunit processome component	protein-coding
2.1254-17	chr1	67042265	67042764	+	0	NA	intron (NM_032291, intron 1 of 24)	intron (NM_032291, intron 1 of 24)	42875	NM_032291	84251	Hs.132121	NM_032291	ENSG00000118473	SGIP1	-	SH3 domain GRB2 like endophilin interacting protein 1	protein-coding
4.74955-9	chr6	80419788	80420287	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-31599	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro-associated Y4	ncRNA
0.736576-34	chr21	45526958	45527457	+	0	NA	promoter-TSS (NM_005049)	promoter-TSS (NM_005049)	-1	NM_005049	5822	Hs.449076	NM_005049	ENSG00000241945	PWP2	EHOC-17|PWP2H|UTP1	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding
5.62249-6	chr4	108668878	108669377	+	0	NA	Intergenic	Intergenic	-27708	NM_005443	9061	Hs.368610	NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
1.0513-11	chr2	121832601	121833100	+	0	NA	Intergenic	Intergenic	209928	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
0.168249-5	chr19	5086694	5087193	+	0	NA	intron (NM_015015, intron 9 of 22)	intron (NM_015015, intron 9 of 22)	117819	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding
0.777937-15	chr20	5434295	5434794	+	0	NA	Intergenic	SVA_A|Other|Other	-8150	NR_038240	100507629	Hs.121383	NR_038239	ENSG00000226995	LINC00658	-	long intergenic non-protein coding RNA 658	ncRNA
1.49354-14	chr20	37676584	37677083	+	0	NA	Intergenic	Intergenic	85852	NR_033905	60625	Hs.444520	NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
1.91114-2	chr11	61197283	61197782	+	0	NA	promoter-TSS (NM_024811)	promoter-TSS (NM_024811)	-65	NM_017841	54949	Hs.313247	NM_017841	ENSG00000167985	SDHAF2	C11orf79|PGL2|SDH5	succinate dehydrogenase complex assembly factor 2	protein-coding
5.24329-6	chr7	112031382	112031881	+	0	NA	Intergenic	CpG	-31568	NM_001197080	3475	Hs.7879	NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
1.86419-18	chr14	105799365	105799864	+	0	NA	intron (NM_015197, intron 1 of 23)	intron (NM_015197, intron 1 of 23)	-17700	NM_001242787	2972	Hs.424484	NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1, RNA polymerase III transcription initiation factor subunit	protein-coding
7.87812-21	chr1	201625629	201626128	+	0	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	8428	NM_020443	89796	Hs.585374	NM_020443	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
0.90444-5	chr21	33104479	33104978	+	0	NA	promoter-TSS (NM_020706)	promoter-TSS (NM_020706)	-297	NM_001145444	57466	Hs.17255	NM_020706	ENSG00000156304	SCAF4	SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
6.81937-12	chr2	182099063	182099562	+	0	NA	intron (NR_130784, intron 2 of 4)	intron (NR_130784, intron 2 of 4)	71067	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
5.59091-10	chr11	61151725	61152224	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-7858	NM_001330285	51259	Hs.26745	NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
3.57535-2	chr7	6677277	6677776	+	0	NA	5' UTR (NM_001278559, exon 2 of 9)	5' UTR (NM_001278559, exon 2 of 9)	573	NM_001278559	100131017	Hs.112668	NM_001278559	ENSG00000205903	ZNF316	ENST00000305834|MZF-3	zinc finger protein 316	protein-coding
7.61954-8	chr19	7701644	7702143	+	0	NA	promoter-TSS (NR_073560)	promoter-TSS (NR_073560)	-94	NM_006949	6813	Hs.515104	NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122	syntaxin binding protein 2	protein-coding
1.22629-13	chr3	132136865	132137364	+	0	NA	intron (NM_001329126, intron 1 of 56)	intron (NM_001329126, intron 1 of 56)	561	NM_015268	23317	Hs.12707	NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
1.56767	chr7	86098910	86099409	+	0	NA	Intergenic	Intergenic	-174071	NM_000840	2913	Hs.590575	NM_000840	ENSG00000198822	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate metabotropic receptor 3	protein-coding
7.98603-4	chr7	1968088	1968587	+	0	NA	intron (NM_001013836, intron 17 of 18)	intron (NM_001013836, intron 17 of 18)	11849	NM_001304525	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
0.76756-7	chr16	78133491	78134383	+	0	NA	non-coding (NR_120435, exon 1 of 1)	non-coding (NR_120435, exon 1 of 1)	627	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
0.716041-8	chr12	98791026	98791525	+	0	NA	Intergenic	Intergenic	59648	NR_033801	121456	Hs.620643	NR_033801	ENSG00000227825	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo
3.47754-6	chr2	169706106	169706605	+	0	NA	intron (NM_001039724, intron 8 of 15)	intron (NM_001039724, intron 8 of 15)	40589	NM_020675	57405	Hs.421956	NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25, NDC80 kinetochore complex component	protein-coding
1.93142-3	chr6	10694982	10695481	+	0	NA	promoter-TSS (NR_026737)	promoter-TSS (NR_026737)	43	NM_017906	55003	Hs.310231	NM_017906	ENSG00000111845	PAK1IP1	MAK11|PIP1|WDR84|bA421M1.5|hPIP1	PAK1 interacting protein 1	protein-coding
1.11259-10	chr8	5583231	5583730	+	0	NA	Intergenic	SVA_D|Other|Other	680589	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
3.93619-10	chr7	107642548	107643047	+	0	NA	intron (NM_002291, intron 2 of 33)	CpG-24795	1007	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
2.62807-8	chr8	105600260	105600759	+	0	NA	intron (NM_013437, intron 1 of 6)	CpG	743	NM_001135703	29967	Hs.600630	NM_013437	ENSG00000147650	LRP12	ST7	LDL receptor related protein 12	protein-coding
6.69586-3	chr8	130365064	130365563	+	0	NA	intron (NR_130917, intron 3 of 3)	intron (NR_130917, intron 3 of 3)	-111827	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
10.9528	chr13	37240605	37241104	+	0	NA	Intergenic	Intergenic	-7195	NM_203451	400120	Hs.422375	NM_203451	ENSG00000180440	SERTM1	C13orf36	serine rich and transmembrane domain containing 1	protein-coding
1.26098-24	chr14	97050449	97050948	+	0	NA	Intergenic	Intergenic	81496	NM_001293628	10914	Hs.253726	NM_032632	ENSG00000090060	PAPOLA	PAP	poly(A) polymerase alpha	protein-coding
3.08035-5	chr14	37641306	37641805	+	0	NA	non-coding (NR_033240, exon 1 of 1)	non-coding (NR_033240, exon 1 of 1)	310	NM_001171170	89874	Hs.730857	NM_030631	ENSG00000183032	SLC25A21	ODC|ODC1	solute carrier family 25 member 21	protein-coding
5.33132-13	chr6	144561292	144561791	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-51332	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
0.118872-18	chr2	216784790	216785289	+	0	NA	Intergenic	Intergenic	-76780	NR_037195	646324	Hs.655713	NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
0.510982-2	chr14	94359172	94359671	+	0	NA	Intergenic	Intergenic	-25819	NM_138344	90050	Hs.525550	NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding
5.157-7	chr20	48470613	48471112	+	0	NA	intron (NM_015266, intron 7 of 15)	L2b|LINE|L2	41612	NM_001260491	23315	Hs.444202	NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
4.46117-11	chr8	104513280	104513779	+	0	NA	intron (NM_001100117, intron 1 of 23)	CpG-25931	553	NM_001100117	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
0.385789-18	chr19	17952819	17953318	+	0	NA	intron (NM_000215, intron 6 of 23)	CpG-13247	5773	NM_000215	3718	Hs.515247	NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
5.59091-7	chr10	104473996	104474495	+	0	NA	promoter-TSS (NM_004311)	promoter-TSS (NM_004311)	-53	NM_178858	118980	Hs.44070	NM_178858	ENSG00000156398	SFXN2	-	sideroflexin 2	protein-coding
14.3771-4	chr1	99744982	99745481	+	0	NA	intron (NM_001166252, intron 1 of 5)	intron (NM_001166252, intron 1 of 5)	15383	NM_014839	9890	Hs.13245	NM_014839	ENSG00000117600	PLPPR4	LPPR4|LPR4|PHP1|PRG-1|PRG1	phospholipid phosphatase related 4	protein-coding
4.38899-6	chr15	89010200	89010699	+	0	NA	promoter-TSS (NM_176805)	promoter-TSS (NM_176805)	184	NM_022163	26589	Hs.534261	NM_022163	ENSG00000259494	MRPL46	C15orf4|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding
3.08035-6	chr1	120174011	120174510	+	0	NA	intron (NM_001080470, intron 1 of 2)	intron (NM_001080470, intron 1 of 2)	16130	NM_001080470	90874	Hs.381105	NM_001080470	ENSG00000143067	ZNF697	-	zinc finger protein 697	protein-coding
4.28291	chr14	24564554	24565053	+	0	NA	intron (NM_001291556, intron 2 of 9)	intron (NM_001291556, intron 2 of 9)	1313	NM_001308054	5106	Hs.75812	NM_004563	ENSG00000100889	PCK2	PEPCK|PEPCK-M|PEPCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein-coding
1.22629-17	chr14	24520825	24521324	+	0	NA	promoter-TSS (NM_138360)	promoter-TSS (NM_138360)	-132	NM_138360	90668	Hs.26135	NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
0.268721-49	chr9	129987519	129988183	+	0	NA	Intergenic	CpG	-38090	NM_001286779	84253	Hs.29304	NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
14.5842-4	chr1	17122925	17123424	+	0	NA	Intergenic	Intergenic	-32199	NM_001271733	11223	Hs.349110	NM_001271733		MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like	protein-coding
29.6257-5	chr1	188042422	188042921	+	0	NA	Intergenic	L1PA15|LINE|L1	629911	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
1.22629-28	chr1	216596380	216596879	+	0	NA	5' UTR (NM_206933, exon 1 of 72)	5' UTR (NM_206933, exon 1 of 72)	109	NM_007123	7399	Hs.655974	NM_007123	ENSG00000042781	USH2A	RP39|US2|USH2|dJ1111A8.1	usherin	protein-coding
3.9794-6	chr1	239987010	239987509	+	0	NA	intron (NM_000740, intron 3 of 4)	intron (NM_000740, intron 3 of 4)	75913	NR_046582	100873984	Hs.199475	NR_046582	ENSG00000234601	CHRM3-AS1	-	CHRM3 antisense RNA 1	ncRNA
14.5593-2	chr8	22806972	22807471	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-21800	NM_144962	157310	Hs.491242	NM_144962	ENSG00000134020	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine binding protein 4	protein-coding
0.118872-11	chr1	61692323	61692822	+	0	NA	intron (NM_001145511, intron 2 of 10)	intron (NM_001145511, intron 2 of 10)	26618	NR_104180	645030	Hs.632410	NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
0.168249-16	chr2	235077205	235077704	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	118108	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
1.67491-27	chr14	20923033	20923794	+	0	NA	promoter-TSS (NM_017807)	promoter-TSS (NM_017807)	123	NM_080648	328	Hs.73722	NM_001641	ENSG00000100823	APEX1	APE|APE1|APEN|APEX|APX|HAP1|REF1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein-coding
8.8941-12	chrX	151922595	151923094	+	0	NA	promoter-TSS (NM_001321404).2	promoter-TSS (NM_001321404).2	399	NR_130638	389903	Hs.721609	NM_203311	ENSG00000268916	CSAG3	CSAG3A|CT24.2	CSAG family member 3	protein-coding
28.2102-2	chr5	10583863	10584362	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	19677	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
1.22629-3	chr3	179755224	179755723	+	0	NA	promoter-TSS (NM_001256750)	promoter-TSS (NM_001256750)	-632	NM_016559	51555	Hs.235331	NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding
0.550241-19	chr4	135120821	135121320	+	0	NA	exon (NM_001114734, exon 2 of 2)	exon (NM_001114734, exon 2 of 2)	1833	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein cytoplasmic 4 like	protein-coding
0.670192-5	chr8	131654382	131654881	+	0	NA	Intergenic	Intergenic	-198725	NM_018482	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
13.019-3	chr14	68987510	68988009	+	0	NA	intron (NM_001321818, intron 10 of 10)	L2b|LINE|L2	107745	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
0.0788851-10	chr12	42900737	42901236	+	0	NA	intron (NM_153026, intron 1 of 7)	intron (NM_153026, intron 1 of 7)	-23189	NM_001144882	144165	Hs.524348	NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
5.95166	chr21	34442069	34442568	+	0	NA	promoter-TSS (NM_138983)	promoter-TSS (NM_138983)	-132	NM_138983	116448	Hs.56663	NM_138983	ENSG00000184221	OLIG1	BHLHB6|BHLHE21	oligodendrocyte transcription factor 1	protein-coding
1.27261-3	chr8	28243610	28244109	+	0	NA	intron (NM_018660, intron 1 of 9)	CpG	118	NM_018660	55893	Hs.435535	NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
0.0656377-2	chr3	108125352	108125851	+	0	NA	intron (NM_014981, intron 33 of 41)	intron (NM_014981, intron 33 of 41)	94969	NM_001282557	11148	Hs.225968	NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HERV-H LTR-associating 2	protein-coding
0.222764-3	chr22	38004478	38004977	+	0	NA	promoter-TSS (NM_001172688)	promoter-TSS (NM_001172688)	246	NM_013365	26088	Hs.499158	NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
11.831	chr6	98783384	98783883	+	0	NA	Intergenic	Intergenic	311226	NR_031579	100302164		NR_031579	ENSG00000238367	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
2.84833-7	chr11	47290746	47291245	+	0	NA	promoter-TSS (NM_130472)	promoter-TSS (NM_130472)	68	NM_130470	8567	Hs.82548	NM_003682	ENSG00000110514	MADD	DENN|IG20|RAB3GEP	MAP kinase activating death domain	protein-coding
0.227338	chr16	85206085	85206584	+	0	NA	Intergenic	Intergenic	35578	NR_033984	400548	Hs.592054	NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
1.58015-11	chr19	8509472	8509971	+	0	NA	promoter-TSS (NM_001297418)	promoter-TSS (NM_001297418)	9	NM_001297418	4670	Hs.465808	NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
4.81486-11	chr20	58616708	58617207	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-14023	NR_126504	284756	Hs.335319	NM_173644		C20orf197	-	chromosome 20 open reading frame 197	protein-coding
0.942041-4	chr20	44427762	44428261	+	0	NA	intron (NM_052951, intron 4 of 12)	L2|LINE|L2	7435	NM_052951	116092	Hs.472852	NM_052951	ENSG00000101457	DNTTIP1	C20orf167|Tdif1|dJ447F3.4	deoxynucleotidyltransferase terminal interacting protein 1	protein-coding
10.9205-4	chr20	17616294	17616793	+	0	NA	intron (NM_004587, intron 6 of 24)	intron (NM_004587, intron 6 of 24)	46385	NM_004587	6238	Hs.472213	NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding
0.305841-3	chr5	1401874	1402535	+	0	NA	intron (NM_001044, intron 13 of 14)	intron (NM_001044, intron 13 of 14)	-22016	NR_125810	100506791	Hs.146092	NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
0.0305075-32	chr4	132896452	132896951	+	0	NA	Intergenic	CpG	210708	NR_125884	101927305	Hs.507924	NR_125883		LOC101927305	-	uncharacterized LOC101927305	ncRNA
0.070049-55	chr11	65149421	65149920	+	0	NA	5' UTR (NM_001278250, exon 1 of 5)	5' UTR (NM_001278250, exon 1 of 5)	187	NM_001278250	283130	Hs.661604	NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
4.12289-5	chr12	76271484	76271983	+	0	NA	Intergenic	Intergenic	153823	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
3.40084-5	chr2	191878749	191879248	+	0	NA	promoter-TSS (NM_139266)	promoter-TSS (NM_139266)	-22	NM_139266	6772	Hs.642990	NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
3.76751	chr5	92173932	92174431	+	0	NA	Intergenic	Intergenic	732868	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
0.0436481-27	chr22	18506132	18506631	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	944	NM_015241	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
0.579919-3	chr6	136172489	136172988	+	0	NA	promoter-TSS (NM_018945)	promoter-TSS (NM_018945)	-96	NM_018945	27115	Hs.744230	NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
2.09715-8	chr1	67390379	67390878	+	0	NA	promoter-TSS (NM_024763)	promoter-TSS (NM_024763)	50	NM_020948	57708	Hs.605432	NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
2.9243-7	chr17	16649811	16650310	+	0	NA	intron (NR_130142, intron 11 of 15)	intron (NR_130142, intron 11 of 15)	-40146	NR_003190	162632	Hs.419859	NR_003190	ENSG00000188933	USP32P1	-	ubiquitin specific peptidase 32 pseudogene 1	pseudo
2.55707-4	chr7	148319972	148320471	+	0	NA	Intergenic	Intergenic	32564	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
0.404816-16	chr5	3595596	3596095	+	0	NA	promoter-TSS (NM_024337)	promoter-TSS (NM_024337)	-323	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
0.390538-23	chr21	44593493	44593992	+	0	NA	TTS (NM_001320719)	TTS (NM_001320719)	3396	NM_001320719	102724652	Hs.184085	NM_001314050	ENSG00000276076	LOC102724652	CRYAA	alpha-crystallin A chain	protein-coding
2.27678-14	chr16	30032475	30032974	+	0	NA	Intergenic	Intergenic	-1931	NM_001109660	146378	Hs.651588	NM_001109659	ENSG00000167194	C16orf92	-	chromosome 16 open reading frame 92	protein-coding
0.574959-12	chr1	162823926	162824425	+	0	NA	TTS (NM_178550)	TTS (NM_178550)	14430	NM_178550	339512	Hs.407631	NM_178550	ENSG00000185860	CCDC190	C1orf110	coiled-coil domain containing 190	protein-coding
1.6813-4	chr15	52463500	52463999	+	0	NA	intron (NM_016194, intron 3 of 12)	intron (NM_016194, intron 3 of 12)	8413	NM_006578	10681	Hs.155090	NM_006578	ENSG00000069966	GNB5	GB5|IDDCA|LADCI	G protein subunit beta 5	protein-coding
0.273344-12	chr3	48646921	48647420	+	0	NA	promoter-TSS (NM_003365)	promoter-TSS (NM_003365)	-72	NM_003365	7384	Hs.119251	NM_003365	ENSG00000010256	UQCRC1	D3S3191|QCR1|UQCR1	ubiquinol-cytochrome c reductase core protein I	protein-coding
0.268721-34	chr1	203184628	203185127	+	0	NA	TTS (NM_001270509)	TTS (NM_001270509)	13983	NM_003465	1118	Hs.201688	NM_003465	ENSG00000133063	CHIT1	CHI3|CHIT|CHITD	chitinase 1	protein-coding
0.414361-13	chr5	76373244	76373743	+	0	NA	exon (NM_001329564, exon 2 of 2)	exon (NM_001329564, exon 2 of 2)	2903	NR_003014	677828	Hs.693249	NR_003014	ENSG00000238961	SNORA47	HBI-115	small nucleolar RNA, H/ACA box 47	snoRNA
0.877779-16	chr12	1770958	1771457	+	0	NA	Intergenic	CpG	-1661	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
11.1919	chr21	31806270	31806769	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	3925	NM_181600	284827	Hs.553677	NM_181600	ENSG00000186971	KRTAP13-4	KAP13.4	keratin associated protein 13-4	protein-coding
3.04518-3	chr3	127770873	127771372	+	0	NA	promoter-TSS (NM_013336)	promoter-TSS (NM_013336)	-90	NM_013336	29927	Hs.518236	NM_013336	ENSG00000058262	SEC61A1	HNFJ4|HSEC61|SEC61|SEC61A	Sec61 translocon alpha 1 subunit	protein-coding
18.2391-7	chr7	69818480	69818979	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	754824	NM_015570	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
0.535477-13	chr12	114297833	114298332	+	0	NA	intron (NM_001146699, intron 21 of 24)	intron (NM_001146699, intron 21 of 24)	-86594	NR_110026	100506465	Hs.211461	NR_110025	ENSG00000249550	LINC01234	LCAL84|onco-lncRNA-32	long intergenic non-protein coding RNA 1234	ncRNA
0.25028-39	chr14	24835194	24835693	+	0	NA	promoter-TSS (NM_001136022)	promoter-TSS (NM_001136022)	-674	NM_001320043	4776	Hs.77810	NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T-cells 4	protein-coding
1.51195-19	chr1	237161140	237161639	+	0	NA	Intergenic	Intergenic	6329	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
0.186345-11	chr17	61524535	61525034	+	0	NA	Intergenic	Intergenic	-1062	NM_001915	1534	Hs.355264	NM_001915	ENSG00000008283	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
0.535477-11	chr20	11871746	11872245	+	0	NA	intron (NM_181443, intron 1 of 4)	CpG	624	NM_001282552	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB domain containing 3	protein-coding
0.101054-5	chr1	16477566	16478065	+	0	NA	intron (NM_004431, intron 1 of 16)	intron (NM_004431, intron 1 of 16)	4789	NM_001329090	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
0.535477-10	chr2	217484104	217484603	+	0	NA	Intergenic	Intergenic	-12692	NR_110392	101928232	Hs.694592	NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
2.02732-3	chr17	36788006	36788505	+	0	NA	Intergenic	SVA_D|Other|Other	-26072	NM_025248	80725	Hs.448872	NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
0.315171-10	chr15	76527488	76527987	+	0	NA	intron (NM_001127716, intron 8 of 10)	MER91B|DNA|hAT-Tip100	24756	NR_028510	7302	Hs.684881	NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
14.9485-4	chr9	45486473	45486972	+	0	NA	Intergenic	L1PA13|LINE|L1	-481432	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
4.32974-7	chr2	55099788	55100287	+	0	NA	intron (NM_001039753, intron 15 of 40)	intron (NM_001039753, intron 15 of 40)	137433	NM_007008	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
1.97911-5	chr2	8272546	8273045	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-155850	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
7.16699-19	chr3	32000088	32000587	+	0	NA	intron (NM_017784, intron 1 of 11)	MER58A|DNA|hAT-Charlie	-22929	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
3.71611-7	chr12	42606782	42607281	+	0	NA	intron (NR_135140, intron 2 of 6)	MLT1F2|LTR|ERVL-MaLR	25139	NM_001190980	10138	Hs.649195	NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
0.496351-6	chr5	34929284	34929783	+	0	NA	promoter-TSS (NM_001012339)	promoter-TSS (NM_001012339)	-165	NM_001012339	134218	Hs.131887	NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
2.75724-4	chr2	139840637	139841136	+	0	NA	Intergenic	Intergenic	185992	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
1.33122-8	chr19	19738809	19739308	+	0	NA	promoter-TSS (NM_004720)	promoter-TSS (NM_004720)	-19	NM_004720	9170	Hs.122575	NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
1.72631-6	chr4	41659930	41660429	+	0	NA	intron (NM_001330983, intron 8 of 21)	MIR|SINE|MIR	45260	NM_001330983	22998	Hs.335163	NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2.73273-13	chr3	135853900	135854749	+	0	NA	intron (NM_001190447, intron 12 of 12)	intron (NM_001190447, intron 12 of 12)	58986	NM_001145417	55167	Hs.18631	NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
7.28158	chr13	53638776	53639275	+	0	NA	Intergenic	Intergenic	36149	NM_006418	10562	Hs.508113	NM_006418	ENSG00000102837	OLFM4	GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD	olfactomedin 4	protein-coding
3.8405-10	chr1	97187616	97188115	+	0	NA	promoter-TSS (NR_125356)	promoter-TSS (NR_125356)	-329	NR_125356	58155	Hs.596061	NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
3.08035-7	chr1	23830980	23831479	+	0	NA	Intergenic	SVA_D|Other|Other	-17193	NR_110799	101928163	Hs.588761	NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
3.25139-5	chr6	147462719	147463218	+	0	NA	intron (NR_034115, intron 3 of 10)	intron (NR_034115, intron 3 of 10)	-17093	NR_132442	106182249	Hs.575390	NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA
0.366845-28	chr3	152552263	152552762	+	0	NA	promoter-TSS (NM_002563)	promoter-TSS (NM_002563)	30	NM_002563	5028	Hs.79881	NM_002563	ENSG00000169860	P2RY1	P2Y1	purinergic receptor P2Y1	protein-coding
4.21361	chr9	34937174	34937673	+	0	NA	Intergenic	SVA_D|Other|Other	-20061	NR_136307	23349	Hs.7989	NM_015297	ENSG00000122733	PHF24	-	PHD finger protein 24	protein-coding
0.560111	chr16	82667498	82667997	+	0	NA	intron (NM_001257, intron 1 of 13)	intron (NM_001257, intron 1 of 13)	7348	NM_001220491	1012	Hs.654386	NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
4.12289-4	chr16	4321078	4321577	+	0	NA	intron (NM_003223, intron 1 of 6)	CpG	1674	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
5.17126-4	chr5	156367871	156368370	+	0	NA	intron (NM_001146726, intron 4 of 7)	SVA_B|Other|Other	22146	NM_001146726	91937	Hs.334907	NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T-cell immunoglobulin and mucin domain containing 4	protein-coding
0.76238-4	chr16	11058017	11058516	+	0	NA	intron (NM_015226, intron 3 of 22)	MIRb|SINE|MIR	19921	NM_001243403	23274	Hs.35490	NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16 member A	protein-coding
10.7469-3	chr10	46009713	46010212	+	0	NA	intron (NM_001002266, intron 2 of 6)	intron (NM_001002266, intron 2 of 6)	20880	NM_001002266	220972	Hs.499489	NM_145021	ENSG00000165406	MARCH8	CMIR|MARCH-VIII|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
3.03644-4	chr16	639307	639806	+	0	NA	promoter-TSS (NM_001172664)	promoter-TSS (NM_001172664)	-113	NM_001172664	57799	Hs.459630	NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
7.52027	chr7	139110966	139111465	+	0	NA	intron (NR_033999, intron 1 of 2)	intron (NR_033999, intron 1 of 2)	1057	NR_033999	100129148	Hs.744449	NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
2.81498-2	chrX	10126303	10126802	+	0	NA	5' UTR (NM_001256944, exon 2 of 11)	5' UTR (NM_001256944, exon 2 of 11)	1567	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
27.8781	chr7	10161216	10161715	+	0	NA	Intergenic	Intergenic	487565	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
7.47147	chr10	118513184	118513683	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	-11348	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
1.61781	chr3	184529689	184530188	+	0	NA	promoter-TSS (NM_015303)	promoter-TSS (NM_015303)	7	NM_001009921	23355	Hs.269263	NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8, CORVET complex subunit	protein-coding
0.565055-12	chr15	91642919	91643734	+	0	NA	promoter-TSS (NM_001323036)	promoter-TSS (NM_001323036)	216	NM_001323034	9899	Hs.21754	NM_014848	ENSG00000185518	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding
4.11168-11	chr2	40685431	40685930	+	0	NA	intron (NM_001112802, intron 1 of 7)	intron (NM_001112802, intron 1 of 7)	-28236	NM_001252624	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
0.721166	chr11	69489879	69490378	+	0	NA	promoter-TSS (NM_153451)	promoter-TSS (NM_153451)	37	NM_153451	220064	Hs.667996	NM_153451	ENSG00000149716	ORAOV1	TAOS1	oral cancer overexpressed 1	protein-coding
4.1005-13	chr17	28276661	28277160	+	0	NA	intron (NM_198529, intron 3 of 22)	intron (NM_198529, intron 3 of 22)	8287	NR_026738	374786	Hs.662411	NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
1.56767-7	chr18	1133508	1134007	+	0	NA	Intergenic	Intergenic	225873	NR_023925	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
2.04815-6	chr14	92012565	92013064	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-35990	NM_001284281	55671	Hs.533887	NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
5.78396-6	chr14	99014580	99015079	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-163121	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
4.23659-4	chr7	149950	150449	+	0	NA	promoter-TSS (NR_134325)	promoter-TSS (NR_134325)	481	NR_108065	100507642	Hs.557780	NR_108064		LOC100507642	-	uncharacterized LOC100507642	ncRNA
1.39063-20	chr1	3773674	3774173	+	0	NA	promoter-TSS (NM_014704)	promoter-TSS (NM_014704)	92	NR_135150	1677	Hs.133089	NM_004402	ENSG00000169598	DFFB	CAD|CPAN|DFF-40|DFF2|DFF40	DNA fragmentation factor subunit beta	protein-coding
5.76754-9	chr5	68628418	68628917	+	0	NA	promoter-TSS (NM_176816)	promoter-TSS (NM_176816)	-47	NM_001297697	202243	Hs.654850	NM_176816	ENSG00000183323	CCDC125	KENAE	coiled-coil domain containing 125	protein-coding
4.19075-11	chr3	17020798	17021297	+	0	NA	intron (NM_015184, intron 1 of 5)	SVA_D|Other|Other	46359	NR_037465	100500913		NR_037465	ENSG00000154822	MIR3714	-	microRNA 3714	ncRNA
7.42321-10	chr1	40224441	40224940	+	0	NA	3' UTR (NM_001720, exon 7 of 7)	3' UTR (NM_001720, exon 7 of 7)	12330	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
0.277972-6	chr5	4640872	4641371	+	0	NA	Intergenic	Intergenic	-132473	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
1.82435-14	chr6	126375408	126375907	+	0	NA	Intergenic	Intergenic	68081	NM_001031712	60487	Hs.404186	NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
4.19075-14	chr9	80366299	80366798	+	0	NA	intron (NM_002072, intron 5 of 6)	intron (NM_002072, intron 5 of 6)	-103316	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
0.227338-3	chr17	66462161	66462660	+	0	NA	intron (NM_001278433, intron 1 of 10)	LTR88a|LTR|Gypsy?	-8745	NM_017983	55062	Hs.463964	NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
0.127808-38	chr11	60928536	60929035	+	0	NA	intron (NM_017966, intron 1 of 4)	CpG	131	NM_017966	55048	Hs.523715	NM_017966	ENSG00000167987	VPS37C	-	VPS37C, ESCRT-I subunit	protein-coding
0.0833099-30	chr3	123361097	123361596	+	0	NA	intron (NM_053027, intron 27 of 32)	intron (NM_053027, intron 27 of 32)	-21892	NM_053031	4638	Hs.477375	NM_005965	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
12.8819	chr17	26754360	26754859	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-21379	NM_080669	113235	Hs.446689	NM_080669	ENSG00000076351	SLC46A1	G21|HCP1|PCFT	solute carrier family 46 member 1	protein-coding
0.501223-13	chr16	3507742	3508241	+	0	NA	promoter-TSS (NM_001317098)	promoter-TSS (NM_001317098)	6	NM_024845	79903	Hs.513296	NM_024845	ENSG00000122390	NAA60	HAT4|NAT15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding
0.273344-3	chr9	131549255	131549754	+	0	NA	promoter-TSS (NM_018201)	promoter-TSS (NM_018201)	18	NM_001286772	54662	Hs.3376	NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
0.798767-27	chr1	117827133	117827632	+	0	NA	Intergenic	Intergenic	-10706	NR_126408	104355292	Hs.576446	NR_126408	ENSG00000235202	LINC01525	lnc-MAN1A2-1	long intergenic non-protein coding RNA 1525	ncRNA
1.43271-16	chr8	124745676	124746175	+	0	NA	intron (NM_004306, intron 1 of 10)	intron (NM_004306, intron 1 of 10)	3741	NM_004306	312	Hs.181107	NM_004306	ENSG00000104537	ANXA13	ANX13|ISA	annexin A13	protein-coding
2.96709-4	chr11	33917217	33917716	+	0	NA	Intergenic	Intergenic	-3630	NM_005574	4005	Hs.34560	NM_005574	ENSG00000135363	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
0.123337-33	chr20	33264519	33265018	+	0	NA	exon (NM_080476, exon 1 of 12)	exon (NM_080476, exon 1 of 12)	321	NM_080476	128869	Hs.253319	NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
7.05534-7	chr6	15352953	15353452	+	0	NA	intron (NM_001267040, intron 1 of 17)	L1MB8|LINE|L1	104116	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
9.20819-18	chr3	187416454	187416953	+	0	NA	exon (NM_001004312, exon 2 of 2)	exon (NM_001004312, exon 2 of 2)	-3451	NR_034062	100131635	Hs.434448	NR_034062	ENSG00000228804	LOC100131635	-	hCG1645011-like	ncRNA
1.71985-9	chr6	154771453	154771952	+	0	NA	intron (NM_173515, intron 1 of 12)	intron (NM_173515, intron 1 of 12)	60051	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding
4.46117-7	chr11	103609747	103610246	+	0	NA	Intergenic	L1PA3|LINE|L1	-110638	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
2.04815-5	chr12	58145532	58146031	+	0	NA	intron (NM_000075, intron 1 of 7)	intron (NM_000075, intron 1 of 7)	449	NM_000075	1019	Hs.95577	NM_000075	ENSG00000135446	CDK4	CMM3|PSK-J3	cyclin dependent kinase 4	protein-coding
0.486625-24	chr1	207720238	207720737	+	0	NA	intron (NM_000651, intron 15 of 46)	intron (NM_000651, intron 15 of 46)	51014	NM_000573	1378	Hs.334019	NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement C3b/C4b receptor 1 (Knops blood group)	protein-coding
0.726296-6	chr4	674800	675299	+	0	NA	TTS (NM_001294341)	TTS (NM_001294341)	3338	NM_002477	4636	Hs.410970	NM_002477	ENSG00000215375	MYL5	-	myosin light chain 5	protein-coding
0.118872-29	chr13	28023971	28024878	+	0	NA	promoter-TSS (NM_001166262)	promoter-TSS (NM_001166262)	-90	NM_001166261	219402	Hs.534582	NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
2.84833-10	chr12	125424343	125424842	+	0	NA	Intergenic	Intergenic	24499	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
0.419142-17	chr6	3322608	3323107	+	0	NA	TTS (NM_001286456)	TTS (NM_001286456)	63695	NM_001128592	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
0.181814-35	chr6	147829805	147830304	+	0	NA	5' UTR (NM_001030060, exon 1 of 2)	5' UTR (NM_001030060, exon 1 of 2)	226	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
3.22393-11	chr10	77159564	77160063	+	0	NA	exon (NM_032772, exon 2 of 2)	exon (NM_032772, exon 2 of 2)	-1473	NR_024421	100131213	Hs.534598	NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
0.736576-27	chr12	96526565	96527064	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-61346	NM_005230	2004	Hs.46523	NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ELK3, ETS transcription factor	protein-coding
4.15669-12	chr10	21463147	21463646	+	0	NA	promoter-TSS (NM_213569)	promoter-TSS (NM_213569)	165	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
1.81774-17	chr14	99984808	99985307	+	0	NA	intron (NM_001144995, intron 3 of 5)	intron (NM_001144995, intron 3 of 5)	37318	NM_001099402	8812	Hs.510409	NM_003858	ENSG00000090061	CCNK	CPR4	cyclin K	protein-coding
1.10698-17	chr1	150227644	150228143	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2245	NM_012113	23632	Hs.528988	NM_012113	ENSG00000118298	CA14	CAXiV	carbonic anhydrase 14	protein-coding
12.5885-2	chr1	36174126	36174625	+	0	NA	Intergenic	Intergenic	10415	NM_152374	127703	Hs.112023	NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
5.25784-4	chr15	47425954	47426453	+	0	NA	Intergenic	SVA_E|Other|Other	-50200	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
2.15383-5	chr4	81973521	81974020	+	0	NA	intron (NM_001201, intron 2 of 2)	intron (NM_001201, intron 2 of 2)	21651	NM_001201	651	Hs.387411	NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
6.77781-8	chr11	11641372	11641871	+	0	NA	intron (NM_198516, intron 1 of 10)	intron (NM_198516, intron 1 of 10)	1940	NM_198516	374378	Hs.655152	NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
0.231917-44	chr4	3627601	3628100	+	0	NA	Intergenic	Intergenic	49254	NR_040045	285492	Hs.145563	NM_173661		LINC00955	-	long intergenic non-protein coding RNA 955	ncRNA
15.6225-4	chr9	126440235	126440734	+	0	NA	intron (NM_024820, intron 5 of 20)	L2a|LINE|L2	-192583	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
0.877779-10	chr20	13765964	13766463	+	0	NA	promoter-TSS (NM_016649)	promoter-TSS (NM_016649)	541	NR_029377	79133	Hs.472165	NM_024120	ENSG00000101247	NDUFAF5	C20orf7|bA526K24.2|dJ842G6.1	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein-coding
1.39662-13	chr5	150226493	150226992	+	0	NA	5' UTR (NM_001145805, exon 1 of 2)	5' UTR (NM_001145805, exon 1 of 2)	657	NM_001145805	345611	Hs.519680	NM_001145805	ENSG00000237693	IRGM	IFI1|IRGM1|LRG-47|LRG47	immunity related GTPase M	protein-coding
8.86057-14	chr7	81003952	81004451	+	0	NA	Intergenic	L1PB1|LINE|L1	186934	NR_136264	105369146	Hs.730390	NR_136264		LOC105369146	-	uncharacterized LOC105369146	ncRNA
8.66461-13	chr13	99133353	99133852	+	0	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	40777	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
1.09579-16	chr12	85430406	85430905	+	0	NA	promoter-TSS (NM_001100917)	promoter-TSS (NM_001100917)	556	NM_001079910	84125	Hs.402200	NM_032165	ENSG00000133640	LRRIQ1	-	leucine rich repeats and IQ motif containing 1	protein-coding
22.8567-4	chr1	171111776	171112275	+	0	NA	intron (NR_002601, intron 1 of 6)	intron (NR_002601, intron 1 of 6)	5146	NR_002601	388714	Hs.448988	NR_002601	ENSG00000117507	FMO6P	FMO6	flavin containing monooxygenase 6 pseudogene	pseudo
35.0585	chr1	99974563	99975062	+	0	NA	Intergenic	SVA_B|Other|Other	-21452	NR_125951	101928270	Hs.576048	NR_125951	ENSG00000224445	LINC01708	-	long intergenic non-protein coding RNA 1708	ncRNA
17.6195-7	chr20	23976189	23976688	+	0	NA	Intergenic	Intergenic	-7022	NM_178311	92086	Hs.355394	NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
0.0130484-33	chr5	138677169	138677668	+	0	NA	promoter-TSS (NM_016480)	promoter-TSS (NM_016480)	-103	NR_109830	51247	Hs.396644	NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
3.04518-9	chr19	49843429	49843928	+	0	NA	TTS (NM_003598)	TTS (NM_003598)	5001	NM_001040031	951	Hs.166556	NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
2.38072-11	chr7	36429174	36429673	+	0	NA	promoter-TSS (NM_001284301)	promoter-TSS (NM_001284301)	11	NM_001284302	54443	Hs.62180	NM_018685	ENSG00000011426	ANLN	FSGS8|Scraps|scra	anillin actin binding protein	protein-coding
0.565055-6	chr8	144553125	144553624	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	-40772	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
10.9963-2	chr4	17578754	17579253	+	0	NA	promoter-TSS (NM_015907)	promoter-TSS (NM_015907)	76	NM_015907	51056	Hs.570791	NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
3.30683-18	chr1	249205281	249205780	+	0	NA	intron (NM_170725, intron 1 of 2)	SVA_D|Other|Other	5088	NM_001017434	267002	Hs.602037	NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
7.03335-8	chr8	102092875	102093374	+	0	NA	Intergenic	CpG	28842	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA
2.79014-8	chrX	14694478	14694977	+	0	NA	intron (NM_001171942, intron 9 of 10)	intron (NM_001171942, intron 9 of 10)	147307	NM_001118885	2742	Hs.2700	NM_002063	ENSG00000101958	GLRA2	GLR	glycine receptor alpha 2	protein-coding
12.84-3	chr1	199244527	199245026	+	0	NA	Intergenic	L1MA9|LINE|L1	-256683	NR_110525	102800316	Hs.568480	NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
1.13509-11	chr14	77648350	77648849	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	497	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
17.3283-3	chr14	68816546	68817045	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	278709	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
2.76544-5	chr2	191746433	191746932	+	0	NA	intron (NM_001256310, intron 1 of 14)	intron (NM_001256310, intron 1 of 14)	1135	NM_014905	2744	Hs.116448	NM_014905	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
0.540393-15	chr17	8123979	8124478	+	0	NA	non-coding (NR_026951, exon 3 of 3)	non-coding (NR_026951, exon 3 of 3)	3133	NR_026951	284029	Hs.121692	NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324	long intergenic non-protein coding RNA 324	ncRNA
0.467237-33	chr19	13262617	13263116	+	0	NA	intron (NM_004907, intron 1 of 1)	CpG	1584	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
0.245682-10	chr1	52418707	52419206	+	0	NA	intron (NM_002867, intron 2 of 4)	intron (NM_002867, intron 2 of 4)	37480	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	RAB3B, member RAS oncogene family	protein-coding
12.3508-2	chr2	28939133	28939632	+	0	NA	Intergenic	Intergenic	-35232	NM_206876	5500	Hs.702907	NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1 catalytic subunit beta	protein-coding
0.32452-18	chr14	90953255	90953754	+	0	NA	Intergenic	Intergenic	30049	NR_135274	105370619	Hs.525530	NR_135274		LOC105370619	-	uncharacterized LOC105370619	ncRNA
0.867161-12	chr14	93640313	93640812	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	10687	NM_022151	64112	Hs.24719	NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
12.7003-4	chr17	8059714	8060213	+	0	NA	Intergenic	CpG	-4210	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
5.17126-7	chr10	61457023	61457522	+	0	NA	intron (NM_194298, intron 1 of 5)	SVA_D|Other|Other	12377	NM_194298	220963	Hs.499709	NM_194298	ENSG00000165449	SLC16A9	C10orf36|MCT9	solute carrier family 16 member 9	protein-coding
0.222764-15	chr6	144263166	144263665	+	0	NA	exon (NM_001289040, exon 6 of 6)	exon (NM_001289040, exon 6 of 6)	19132	NM_001317157	5325	Hs.743225	NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
0.80399-3	chr17	18759087	18759795	+	0	NA	promoter-TSS (NM_001243942)	promoter-TSS (NM_001243942)	-171	NM_001243942	5636	Hs.632236	NM_002767	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase associated protein 2	protein-coding
1.69411-10	chr8	42195374	42195873	+	0	NA	promoter-TSS (NM_002690)	promoter-TSS (NM_002690)	-350	NM_002690	5423	Hs.654484	NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
7.30487-3	chr21	30153884	30154383	+	0	NA	Intergenic	MER77|LTR|ERVL	103562	NM_182749	29104	Hs.163846	NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
2.48721-10	chr4	141030750	141031249	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	44234	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
2.53366-3	chr9	89562265	89562764	+	0	NA	promoter-TSS (NM_002048)	promoter-TSS (NM_002048)	-410	NM_002048	2619	Hs.65029	NM_002048	ENSG00000180447	GAS1	-	growth arrest specific 1	protein-coding
2.98432-15	chr1	33269309	33269808	+	0	NA	intron (NM_003680, intron 4 of 12)	SVA_B|Other|Other	-13485	NM_001256121	64766	Hs.440880	NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
3.5164-8	chr1	245376335	245376834	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	58297	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
3.48722-12	chr6	31334622	31335121	+	0	NA	Intergenic	Intergenic	-9849	NM_005514	3106	Hs.77961	NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
0.400052-24	chr1	10967084	10967583	+	0	NA	Intergenic	Intergenic	74761	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
4.49772-7	chr8	102513529	102514028	+	0	NA	intron (NM_001330593, intron 1 of 15)	intron (NM_001330593, intron 1 of 15)	9110	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding
5.70248-6	chr1	235105683	235106182	+	0	NA	Intergenic	Intergenic	-6186	NR_125945	101927851	Hs.520684	NR_125945	ENSG00000238005	LOC101927851	-	uncharacterized LOC101927851	ncRNA
0.624821-21	chr6	39964829	39965328	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-62788	NR_033233	4337	Hs.357128	NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCODA	molybdenum cofactor synthesis 1	protein-coding
0.614803-6	chr2	10495924	10496423	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	-12631	NM_001258358	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
13.6251-3	chr6	71099731	71100230	+	0	NA	Intergenic	Intergenic	-3925	NR_125857	101928353		NR_125857		EVADR	-	uncharacterized LOC101928353	ncRNA
17.3755-2	chr3	86589431	86589930	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	58587	NR_135563	101927494	Hs.385622	NR_135563	ENSG00000241328	LINC02070	-	long intergenic non-protein coding RNA 2070	ncRNA
18.2391	chr10	51795071	51795570	+	0	NA	intron (NR_038275, intron 6 of 6)	L2a|LINE|L2	32243	NR_038275	100421577	Hs.712902	NR_038275	ENSG00000235618	FAM21EP	-	family with sequence similarity 21, member A pseudogene	pseudo
1.59894-8	chrX	155258105	155258604	+	0	NA	promoter-TSS (NR_110561)	promoter-TSS (NR_110561)	-506	NR_110561	727856	Hs.740212	NR_110561		DDX11L16	-	DEAD/H-box helicase 11 like 16	pseudo
0.680339-3	chr6	25660656	25661155	+	0	NA	intron (NM_006998, intron 2 of 10)	intron (NM_006998, intron 2 of 10)	8476	NM_006998	10590	Hs.116428	NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
0.680339-23	chr3	42067025	42067524	+	0	NA	Intergenic	Intergenic	-63342	NR_136342	54986	Hs.656192	NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
0.5061-7	chr7	132755304	132755803	+	0	NA	intron (NR_133671, intron 1 of 10)	intron (NR_133671, intron 1 of 10)	11365	NM_001317178	54927	Hs.655010	NM_017812	ENSG00000106554	CHCHD3	MINOS3|Mic19|PPP1R22	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
1.20904-25	chr1	78511798	78512297	+	0	NA	intron (NM_017655, intron 1 of 5)	CpG	458	NM_017655	54810	Hs.603818	NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
3.49692-6	chr4	76173567	76174066	+	0	NA	Intergenic	Intergenic	-105470	NR_033964	441025	Hs.407667	NR_033964	ENSG00000251383	LOC441025	-	uncharacterized LOC441025	ncRNA
0.629839-15	chr5	8756576	8757075	+	0	NA	Intergenic	Intergenic	-83019	NR_109932	101929284	Hs.403715	NR_109932		LOC101929284	-	uncharacterized LOC101929284	ncRNA
0.0744648-30	chr3	189183557	189184056	+	0	NA	Intergenic	Intergenic	-130729	NM_001329964	8626	Hs.137569	NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
1.92465-13	chr3	69736259	69736758	+	0	NA	Intergenic	Intergenic	-52078	NM_198159	4286	Hs.166017	NM_000248	ENSG00000187098	MITF	CMM8|MI|WS2|WS2A|bHLHe32	melanogenesis associated transcription factor	protein-coding
4.08935-16	chr2	42222825	42223324	+	0	NA	Intergenic	SVA_D|Other|Other	-42131	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
0.172766-7	chr17	16118168	16118667	+	0	NA	intron (NM_006311, intron 1 of 45)	CpG	457	NM_006311	9611	Hs.462323	NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
0.32452-7	chr1	171868010	171868509	+	0	NA	intron (NM_015569, intron 1 of 20)	intron (NM_015569, intron 1 of 20)	34927	NR_046845	100874284		NR_046845	ENSG00000233540	DNM3-IT1	-	DNM3 intronic transcript 1	ncRNA
0.419142-54	chr12	10724295	10724794	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	27890	NR_028045	10748	Hs.159297	NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
6.94649-10	chr16	29859696	29860195	+	0	NA	TTS (NM_005115)	TTS (NM_005115)	14664	NM_006319	10423	Hs.121549	NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
43.8828	chr9	14722504	14723003	+	0	NA	promoter-TSS (NM_005454)	promoter-TSS (NM_005454)	-38	NM_005454	9350	Hs.248204	NM_005454	ENSG00000147869	CER1	DAND4	cerberus 1, DAN family BMP antagonist	protein-coding
46.6555	chr1	108496142	108497087	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-10451	NR_046653	100873946	Hs.568676	NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
2.02732-18	chr11	3830246	3830745	+	0	NA	intron (NR_144430, intron 1 of 3)	intron (NR_144430, intron 1 of 3)	729	NM_001256240	27315	Hs.133968	NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
10.3198-3	chr2	46116117	46116616	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	237323	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
0.705811-9	chr19	16702729	16703228	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-19785	NM_024881	79939	Hs.620596	NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
1.22053-19	chr17	72847705	72848204	+	0	NA	intron (NM_001278553, intron 3 of 11)	MIR|SINE|MIR	8053	NM_000835	2905	Hs.436980	NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
5.46682-2	chr19	36134171	36134670	+	0	NA	exon (NM_001300974, exon 4 of 6)	exon (NM_001300974, exon 4 of 6)	1781	NM_001304549	2116	Hs.194061	NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant 2	protein-coding
1.59267-4	chr3	143691125	143691624	+	0	NA	promoter-TSS (NM_001134470)	promoter-TSS (NM_001134470)	734	NM_173552	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
1.19186-20	chr7	23736496	23736995	+	0	NA	intron (NM_001127365, intron 3 of 4)	intron (NM_001127365, intron 3 of 4)	-13041	NM_001260505	56164	Hs.309767	NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
0.649968-37	chr5	146257243	146257742	+	0	NA	intron (NM_181678, intron 2 of 10)	CpG	856	NM_181675	5521	Hs.627618	NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
0.291884-16	chr10	72433546	72434045	+	0	NA	intron (NM_080722, intron 1 of 21)	intron (NM_080722, intron 1 of 21)	1533	NM_139155	140766	Hs.352156	NM_080722	ENSG00000138316	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein-coding
16.073-3	chr12	88539377	88539876	+	0	NA	intron (NM_181783, intron 1 of 13)	MER4C|LTR|ERV1	3553	NM_181783	160418	Hs.331268	NM_181783	ENSG00000139324	TMTC3	LIS8|SMILE	transmembrane and tetratricopeptide repeat containing 3	protein-coding
2.0204-19	chr5	77299744	77300243	+	0	NA	intron (NM_003664, intron 26 of 26)	intron (NM_003664, intron 26 of 26)	45922	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA
19.5468-5	chr1	116767134	116767633	+	0	NA	Intergenic	Intergenic	113007	NM_152367	126868	Hs.376194	NM_152367	ENSG00000173212	MAB21L3	C1orf161	mab-21 like 3	protein-coding
2.86509-5	chr1	65532082	65532581	+	0	NA	5' UTR (NM_001321853, exon 2 of 27)	5' UTR (NM_001321853, exon 2 of 27)	1098	NM_001321854	3716	Hs.207538	NM_002227	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
3.52617	chr16	11239211	11239710	+	0	NA	intron (NM_015226, intron 21 of 22)	MER58A|DNA|hAT-Charlie	110579	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
6.69586-2	chr1	24855158	24855657	+	0	NA	intron (NM_001251985, intron 1 of 1)	L1MEe|LINE|L1	14603	NM_001251980	11123	Hs.656799	NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
8.01343-6	chr11	57135551	57136050	+	0	NA	intron (NM_002559, intron 9 of 11)	intron (NM_002559, intron 9 of 11)	12823	NM_006093	10394	Hs.251386	NM_006093	ENSG00000156575	PRG3	MBP2|MBPH	proteoglycan 3, pro eosinophil major basic protein 2	protein-coding
0.680339-6	chr13	103888526	103889025	+	0	NA	Intergenic	Intergenic	-169579	NM_000452	6555	Hs.194783	NM_000452	ENSG00000125255	SLC10A2	ASBT|IBAT|ISBT|NTCP2|PBAM	solute carrier family 10 member 2	protein-coding
11.1351-7	chr5	152871583	152872082	+	0	NA	promoter-TSS (NM_001258021)	promoter-TSS (NM_001258021)	100	NM_001258021	2890	Hs.519693	NM_000827	ENSG00000155511	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate ionotropic receptor AMPA type subunit 1	protein-coding
0.798767-32	chr17	72199637	72200136	+	0	NA	promoter-TSS (NM_000999)	promoter-TSS (NM_000999)	91	NM_000999	6169	Hs.380953	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
4.93495-4	chr1	203260280	203260779	+	0	NA	Intergenic	Intergenic	3701	NR_117098	100506775	Hs.443859	NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
0.665127-11	chr9	139736180	139736679	+	0	NA	TTS (NM_001173988)	TTS (NM_001173988)	-2438	NM_001080482	389813	Hs.495485	NM_001080482	ENSG00000232434	C9orf172	-	chromosome 9 open reading frame 172	protein-coding
14.5842-3	chr10	131936769	131937268	+	0	NA	intron (NM_001199868, intron 1 of 11)	intron (NM_001199868, intron 1 of 11)	2345	NM_001321980	10539	Hs.42644	NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
0.589858-38	chr18	57363579	57364078	+	0	NA	intron (NM_133459, intron 2 of 10)	CpG	816	NM_133459	147372	Hs.34333	NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding
28.7943	chr20	1814884	1815383	+	0	NA	Intergenic	MIRb|SINE|MIR	-54741	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
5.90067-4	chr17	80415865	80416364	+	0	NA	promoter-TSS (NM_001038618)	promoter-TSS (NM_001038618)	54	NM_001038618	26502	Hs.256526	NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
1.51195-12	chr6	37592686	37593185	+	0	NA	Intergenic	Intergenic	-69737	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
10.0612-2	chr11	44628069	44628568	+	0	NA	intron (NM_002231, intron 6 of 9)	MIRb|SINE|MIR	41177	NM_002231	3732	Hs.527778	NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
66.5758	chr13	112325956	112326455	+	0	NA	Intergenic	Intergenic	77849	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
13.2514	chr2	1841161	1841660	+	0	NA	intron (NM_001329845, intron 21 of 24)	intron (NM_001329845, intron 21 of 24)	-93091	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
0.172766-48	chr2	223105837	223106336	+	0	NA	intron (NM_181457, intron 4 of 7)	intron (NM_181457, intron 4 of 7)	-56780	NM_153038	151278	Hs.350729	NM_153038	ENSG00000163081	CCDC140	-	coiled-coil domain containing 140	protein-coding
0.467237-13	chr13	79966987	79967486	+	0	NA	intron (NM_001286631, intron 1 of 21)	intron (NM_001286631, intron 1 of 21)	13120	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
1.65579-2	chr1	145209015	145209514	+	0	NA	5' UTR (NM_203458, exon 1 of 5)	5' UTR (NM_203458, exon 1 of 5)	151	NM_203458	388677	Hs.655156	NM_203458	ENSG00000264343	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
0.79355-24	chr15	63766995	63767494	+	0	NA	Intergenic	Intergenic	-29466	NR_046341	9960	Hs.458499	NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
4.82804-7	chr1	230204581	230205080	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	1888	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
0.51587-11	chr7	100860650	100861149	+	0	NA	promoter-TSS (NM_006349)	promoter-TSS (NM_006349)	-86	NM_006349	10467	Hs.211079	NM_006349	ENSG00000106400	ZNHIT1	CG1I|ZNFN4A1	zinc finger HIT-type containing 1	protein-coding
0.486625-7	chr19	50037040	50037539	+	0	NA	intron (NM_020650, intron 2 of 6)	CpG	6414	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
0.525663-10	chr6	109103395	109103894	+	0	NA	Intergenic	Intergenic	30787	NR_033376	387111	Hs.520310	NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
0.0130484-17	chr2	233314610	233315109	+	0	NA	Intergenic	Intergenic	-5963	NM_001631	248	Hs.37009	NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
0.362122-2	chr17	72357441	72357940	+	0	NA	intron (NM_001080466, intron 1 of 2)	intron (NM_001080466, intron 1 of 2)	268	NM_001080466	388419	Hs.211870	NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
2.07608	chr15	31652864	31653363	+	0	NA	intron (NM_001302461, intron 1 of 1)	intron (NM_001302461, intron 1 of 1)	34055	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
11.2148-2	chr8	74225885	74226384	+	0	NA	intron (NR_125388, intron 5 of 5)	intron (NR_125388, intron 5 of 5)	19297	NM_172037	157506	Hs.244940	NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding
0.195421-27	chr2	241790573	241791072	+	0	NA	Intergenic	Intergenic	-17340	NM_000030	189	Hs.144567	NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6	alanine-glyoxylate aminotransferase	protein-coding
1.28427-9	chr1	226384604	226385103	+	0	NA	Intergenic	Intergenic	-10430	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
4.64706-3	chr3	139254018	139254517	+	0	NA	intron (NM_001130992, intron 2 of 2)	L2b|LINE|L2	4404	NM_002899	5947	Hs.529571	NM_002899	ENSG00000114115	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1	protein-coding
4.43697-8	chr7	105171881	105172380	+	0	NA	promoter-TSS (NM_001346599)	promoter-TSS (NM_001346599)	-398	NR_144478	60561	Hs.531388	NM_021930	ENSG00000135249	RINT1	RINT-1	RAD50 interactor 1	protein-coding
2.13959	chr5	1545770	1546269	+	0	NA	Intergenic	Intergenic	-21927	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
0.00434512-13	chr15	48623725	48624224	+	0	NA	promoter-TSS (NM_001948)	promoter-TSS (NM_001948)	353	NM_001025249	1854	Hs.527980	NM_001948	ENSG00000128951	DUT	dUTPase	deoxyuridine triphosphatase	protein-coding
0.0130484-39	chr21	27542830	27543329	+	0	NA	promoter-TSS (NM_000484)	promoter-TSS (NM_000484)	59	NM_000484	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta precursor protein	protein-coding
25.5752-4	chr6	15871434	15871933	+	0	NA	Intergenic	Intergenic	-208394	NM_001271669	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
0.268721-11	chr18	1127422	1127921	+	0	NA	Intergenic	Intergenic	222474	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
7.44727-5	chr1	31384125	31384624	+	0	NA	Intergenic	Intergenic	-2894	NM_014654	9672	Hs.158287	NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
3.01899-19	chr20	1927609	1928108	+	0	NA	promoter-TSS (NR_134520)	promoter-TSS (NR_134520)	2	NR_134520	727993	Hs.551466	NR_134520	ENSG00000233896	LOC727993	-	uncharacterized LOC727993	ncRNA
0.79355-20	chr13	113645064	113645563	+	0	NA	intron (NM_001320816, intron 1 of 29)	intron (NM_001320816, intron 1 of 29)	-10715	NM_001320815	23263	Hs.170422	NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
1.39063-17	chr14	91621229	91621728	+	0	NA	intron (NM_001286470, intron 4 of 16)	L2c|LINE|L2	28708	NR_003709	100124539	Hs.693444	NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
0.76756-29	chr9	19493197	19493696	+	0	NA	Intergenic	Intergenic	84521	NM_001010887	340485	Hs.41379	NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
1.36083-7	chr2	37423537	37424036	+	0	NA	intron (NM_001322375, intron 1 of 4)	CpG	182	NM_001322373	100505876	Hs.666958	NM_001322373	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	protein-coding
0.798767-25	chr7	143058938	143059437	+	0	NA	promoter-TSS (NM_014690)	promoter-TSS (NM_014690)	-14	NM_014690	9715	Hs.648908	NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
0.594835-4	chr1	204328799	204329298	+	0	NA	promoter-TSS (NM_014935)	promoter-TSS (NM_014935)	9	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
0.798767-18	chr2	189980698	189981197	+	0	NA	intron (NM_000393, intron 1 of 53)	intron (NM_000393, intron 1 of 53)	16890	NR_036076	100422908		NR_036076	ENSG00000264725	MIR3129	mir-3129	microRNA 3129	ncRNA
0.245682-42	chr19	47616811	47617310	+	0	NA	promoter-TSS (NM_015168)	promoter-TSS (NM_015168)	-51	NM_015168	23211	Hs.104661	NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
2.18963	chr16	84174738	84175237	+	0	NA	intron (NM_031463, intron 1 of 5)	intron (NM_031463, intron 1 of 5)	3813	NM_031463	83693	Hs.555992	NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
1.35489	chr14	24423028	24423527	+	0	NA	non-coding (NR_023921, exon 1 of 2)	non-coding (NR_023921, exon 1 of 2)	129	NR_023921	55449	Hs.569361	NM_018583	ENSG00000215256	DHRS4-AS1	AS1DHRS4|C14orf167|DHRS4AS1|PRO1488	DHRS4 antisense RNA 1	ncRNA
11.8046	chr7	55590078	55590577	+	0	NA	intron (NM_030796, intron 1 of 4)	intron (NM_030796, intron 1 of 4)	4246	NM_001321251	81552	Hs.488307	NM_030796	ENSG00000154978	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
0.070049-62	chr3	194207446	194207945	+	0	NA	promoter-TSS (NR_033929)	promoter-TSS (NR_033929)	-174	NR_033929	401106	Hs.407087	NR_033929		LINC00884	-	long intergenic non-protein coding RNA 884	ncRNA
0.985417-19	chrX	71952962	71953461	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-19182	NM_002637	5255	Hs.201379	NM_002637	ENSG00000067177	PHKA1	PHKA	phosphorylase kinase regulatory subunit alpha 1	protein-coding
0.0436481-17	chr14	75877003	75877502	+	0	NA	Intergenic	Intergenic	-17257	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
3.18759-6	chr17	72328996	72329495	+	0	NA	intron (NM_153209, intron 2 of 19)	intron (NM_153209, intron 2 of 19)	6894	NM_153209	124602	Hs.372773	NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
14.437-4	chr8	87526407	87526906	+	0	NA	promoter-TSS (NM_003909)	promoter-TSS (NM_003909)	0	NM_003909	8895	Hs.191219	NM_003909	ENSG00000085719	CPNE3	CPN3|PRO1071	copine 3	protein-coding
39.9568	chr6	89084215	89084714	+	0	NA	Intergenic	Intergenic	164624	NR_110867	101928936	Hs.533080	NR_110867		LOC101928936	-	uncharacterized LOC101928936	ncRNA
7.56962-6	chr11	115764927	115765426	+	0	NA	Intergenic	Intergenic	-134258	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
2.52588-7	chr8	144373269	144373768	+	0	NA	promoter-TSS (NM_030895)	promoter-TSS (NM_030895)	-41	NM_030895	79943	Hs.512740	NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
12.7084-3	chr4	176728758	176729257	+	0	NA	intron (NR_125901, intron 6 of 7)	MIR|SINE|MIR	5258	NM_201591	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
30.7727	chr8	98581670	98582169	+	0	NA	Intergenic	Intergenic	-74488	NM_178812	92140	Hs.377155	NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
4.65974-6	chr6	131740825	131741324	+	0	NA	Intergenic	Intergenic	-153270	NM_000045	383	Hs.440934	NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
1.91789-4	chr3	126763775	126764274	+	0	NA	Intergenic	Intergenic	56587	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
3.90406-5	chr20	19787697	19788196	+	0	NA	Intergenic	Intergenic	-79219	NM_001242581	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
0.660068-11	chr9	100559471	100559970	+	0	NA	Intergenic	SVA_D|Other|Other	-55817	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
1.22053-30	chr16	75144936	75145435	+	0	NA	TTS (NM_032268)	TTS (NM_032268)	5485	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
24.2022	chr5	169190230	169190729	+	0	NA	intron (NM_004946, intron 25 of 51)	intron (NM_004946, intron 25 of 51)	126228	NM_004946	1794	Hs.586174	NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
0.419142-50	chr17	66255660	66256159	+	0	NA	intron (NM_014960, intron 1 of 11)	MER33|DNA|hAT-Charlie	586	NM_014960	22901	Hs.437249	NM_014960	ENSG00000141337	ARSG	-	arylsulfatase G	protein-coding
4.36519-14	chr16	87317731	87318230	+	0	NA	intron (NR_104667, intron 3 of 4)	intron (NR_104667, intron 3 of 4)	8078	NR_104667	101928682	Hs.149004	NR_104667	ENSG00000261697	LOC101928682	-	uncharacterized LOC101928682	ncRNA
9.50782-6	chr8	144598690	144599189	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	24681	NM_015117	23144	Hs.521915	NM_015117	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
0.79355-10	chr2	85766222	85767150	+	0	NA	promoter-TSS (NR_038942)	promoter-TSS (NR_038942)	585	NM_005911	4144	Hs.516157	NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
1.02373-16	chrX	56405839	56406338	+	0	NA	Intergenic	SVA_C|Other|Other	146497	NM_001324100	11279	Hs.646614	NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel like factor 8	protein-coding
10.7831-3	chrUn_gl000214	116880	117379	+	0	NA	NA	Intergenic	NA	NA								
9.17215-4	chr11	11642522	11643021	+	0	NA	intron (NM_198516, intron 1 of 10)	CpG	790	NM_198516	374378	Hs.655152	NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
0.649968-24	chr5	23711600	23712099	+	0	NA	Intergenic	L1PA16|LINE|L1	204085	NM_001310214	56979	Hs.283096	NM_020227	ENSG00000164256	PRDM9	KMT8B|MEISETZ|MSBP3|PFM6|ZNF899	PR/SET domain 9	protein-coding
3.38187-8	chr5	80461254	80461753	+	0	NA	intron (NM_006909, intron 17 of 26)	intron (NM_006909, intron 17 of 26)	-39959	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
0.0788851-4	chr14	32851852	32852351	+	0	NA	intron (NM_004274, intron 1 of 13)	intron (NM_004274, intron 1 of 13)	53622	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
1.4813-11	chr4	153960054	153960553	+	0	NA	Intergenic	Intergenic	96168	NM_033393	85462	Hs.132629	NM_033393	ENSG00000137460	FHDC1	-	FH2 domain containing 1	protein-coding
0.91515-19	chr7	133825976	133826475	+	0	NA	intron (NM_144648, intron 3 of 19)	intron (NM_144648, intron 3 of 19)	14120	NM_144648	136332	Hs.149774	NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
2.71646-10	chr9	128105689	128106188	+	0	NA	intron (NM_015635, intron 18 of 26)	L2a|LINE|L2	44769	NM_001282681	26130	Hs.42376	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
11.2205	chr3	175990999	175991498	+	0	NA	Intergenic	Intergenic	-241643	NR_107017	102465858		NR_107017	ENSG00000283333	MIR7977	hsa-mir-7977	microRNA 7977	ncRNA
1.84422-15	chr16	49590309	49590808	+	0	NA	intron (NM_001330533, intron 3 of 5)	intron (NM_001330533, intron 3 of 5)	-38062	NR_144553	1596	Hs.684517	NR_144553		ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
0.0966115-17	chr1	111158282	111158781	+	0	NA	intron (NM_001204269, intron 1 of 4)	intron (NM_001204269, intron 1 of 4)	-9556	NM_004974	3737	Hs.248139	NM_004974	ENSG00000177301	KCNA2	EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
7.82516-9	chr13	100258049	100258548	+	0	NA	promoter-TSS (NR_104592)	promoter-TSS (NR_104592)	-620	NR_104592	171425	Hs.655642	NM_206808	ENSG00000125246	CLYBL	CLB	citrate lyase beta like	protein-coding
25.2143	chr1	169546010	169546509	+	0	NA	intron (NM_000130, intron 2 of 24)	intron (NM_000130, intron 2 of 24)	9510	NM_000130	2153	Hs.30054	NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
9.70616-8	chr8	41648346	41648845	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	6545	NM_020477	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
6.9037-2	chr14	78721311	78721810	+	0	NA	intron (NR_073547, intron 2 of 20)	intron (NR_073547, intron 2 of 20)	84844	NR_073547	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
4.28291-14	chr22	43551653	43552152	+	0	NA	intron (NM_001256530, intron 1 of 3)	intron (NM_001256530, intron 1 of 3)	3961	NM_001256530	706	Hs.202	NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|mDRC|pk18	translocator protein	protein-coding
14.9485	chr10	106088898	106089397	+	0	NA	promoter-TSS (NM_001272012)	promoter-TSS (NM_001272012)	-397	NM_001272012	85450	Hs.523252	NM_033397	ENSG00000148841	ITPRIP	DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
14.3771	chr17	30152982	30153481	+	0	NA	Intergenic	Intergenic	32862	NM_001330176	55352	Hs.462729	NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
3.53596-17	chr1	205744347	205744846	+	0	NA	promoter-TSS (NM_001135664)	promoter-TSS (NM_001135664)	14	NM_003929	8934	Hs.115325	NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
13.2606	chr1	204256079	204256578	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	72729	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
9.54677-5	chr2	217535521	217536020	+	0	NA	Intergenic	Intergenic	11429	NM_001313990	3485	Hs.438102	NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding
0.204516-5	chr5	63801424	63801923	+	0	NA	promoter-TSS (NM_001029875)	promoter-TSS (NM_001029875)	-101	NM_001029875	401190	Hs.657133	NM_001029875	ENSG00000186479	RGS7BP	R7BP	regulator of G-protein signaling 7 binding protein	protein-coding
15.5129	chr8	122586558	122587057	+	0	NA	Intergenic	L3|LINE|CR1	-64779	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
2.5649-5	chr1	55532960	55533459	+	0	NA	3' UTR (NM_015306, exon 68 of 68)	3' UTR (NM_015306, exon 68 of 68)	27314	NR_110451	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
5.60667-8	chr13	105812154	105812653	+	0	NA	Intergenic	Intergenic	-305813	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
1.34896-11	chr1	156470847	156471346	+	0	NA	promoter-TSS (NM_005920)	promoter-TSS (NM_005920)	-462	NM_005920	4209	Hs.314327	NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
20.7109-2	chr4	2887839	2888338	+	0	NA	intron (NM_001286645, intron 5 of 17)	intron (NM_001286645, intron 5 of 17)	42211	NM_001286645	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
0.705811-6	chr19	56826319	56826818	+	0	NA	promoter-TSS (NM_001322074)	promoter-TSS (NM_001322074)	-272	NM_001322074	79149	Hs.177688	NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
0.680339-30	chr19	38559854	38560353	+	0	NA	intron (NM_015073, intron 2 of 21)	intron (NM_015073, intron 2 of 21)	154787	NM_001135155	8193	Hs.631576	NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	double PHD fingers 1	protein-coding
10.0305	chr4	26153685	26154184	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-167398	NM_005349	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
1.10698-15	chr7	74001665	74002164	+	0	NA	intron (NM_001199207, intron 22 of 26)	intron (NM_001199207, intron 22 of 26)	-70077	NM_001163636	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
8.47712-13	chr13	112331144	112331643	+	0	NA	Intergenic	Intergenic	83037	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
2.24754-6	chr11	20044095	20044594	+	0	NA	intron (NM_001111019, intron 1 of 27)	intron (NM_001111019, intron 1 of 27)	242	NM_001111019	89797	Hs.64341	NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
1.17475-8	chr6	20403496	20403995	+	0	NA	promoter-TSS (NM_001243076)	promoter-TSS (NM_001243076)	-165	NM_001243076	1871	Hs.269408	NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
4.85452-9	chr14	75372324	75372823	+	0	NA	3' UTR (NM_031464, exon 11 of 11)	3' UTR (NM_031464, exon 11 of 11)	16572	NM_031464	83694	Hs.414481	NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
4.36519-22	chr3	183862805	183863304	+	0	NA	TTS (NM_003907)	TTS (NM_003907)	-10230	NM_004423	1857	Hs.388116	NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
0.788339-28	chr12	50260815	50261314	+	0	NA	3' UTR (NM_012306, exon 12 of 12)	3' UTR (NM_012306, exon 12 of 12)	-24152	NM_181708	144233	Hs.142736	NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
9.1364-15	chr10	27182405	27182904	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-32638	NM_001178120	10006	Hs.508148	NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
5.70248-11	chr10	74079501	74080000	+	0	NA	Intergenic	CpG	35157	NM_017626	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
0.132283-20	chr16	3030262	3030761	+	0	NA	promoter-TSS (NM_182687)	promoter-TSS (NM_182687)	29	NM_001258450	9088	Hs.732385	NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
0.996329-36	chr4	166795747	166796246	+	0	NA	intron (NM_012464, intron 1 of 20)	intron (NM_012464, intron 1 of 20)	1586	NM_012464	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
0.433514-12	chr17	75798869	75799368	+	0	NA	Intergenic	Intergenic	-74477	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
1.95861	chr22	35936207	35936706	+	0	NA	promoter-TSS (NM_014310)	promoter-TSS (NM_014310)	-896	NM_014310	23551	Hs.474711	NM_014310	ENSG00000100302	RASD2	MGC:4834|Rhes|TEM2	RASD family member 2	protein-coding
1.80456-4	chr1	27693195	27693694	+	0	NA	promoter-TSS (NM_001297609)	promoter-TSS (NM_001297609)	-87	NM_001297609	9064	Hs.194694	NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
0.259491-6	chr3	106117553	106118052	+	0	NA	Intergenic	Intergenic	-529536	NR_135810	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
62.66	chr21	33707162	33707661	+	0	NA	intron (NM_014825, intron 28 of 38)	intron (NM_014825, intron 28 of 38)	42220	NR_002996	677846	Hs.712293	NR_002996	ENSG00000200792	SNORA80A	ACA67|SNORA80	small nucleolar RNA, H/ACA box 80A	snoRNA
46.3827-4	chr9	103780694	103781193	+	0	NA	Intergenic	Intergenic	-10088	NM_207299	54886	Hs.382683	NM_017753	ENSG00000148123	PLPPR1	LPPR1|PRG-3	phospholipid phosphatase related 1	protein-coding
0.798767-6	chr7	127849750	127850249	+	0	NA	Intergenic	Intergenic	2074	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
5.01689-5	chr12	76303527	76304026	+	0	NA	Intergenic	Intergenic	121780	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
0.123337-32	chr6	152598898	152599397	+	0	NA	intron (NM_182961, intron 98 of 145)	intron (NM_182961, intron 98 of 145)	-92634	NM_001347701	23345	Hs.12967	NM_015293	ENSG00000131018	SYNE1	8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
1.29011-19	chr18	19535920	19536419	+	0	NA	Intergenic	L1MEf|LINE|L1	-124802	NR_110369	102723167	Hs.658808	NR_110369	ENSG00000265142	MIR133A1HG	MIR1-2HG	MIR133A1 host gene	ncRNA
0.809219-10	chr3	38206685	38207184	+	0	NA	promoter-TSS (NM_005109)	promoter-TSS (NM_005109)	-92	NM_005109	9943	Hs.475970	NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive 1	protein-coding
5.37602-6	chr3	129136886	129137385	+	0	NA	exon (NM_207307, exon 3 of 9)	exon (NM_207307, exon 3 of 9)	10359	NM_207307	90288	Hs.652347	NM_207307	ENSG00000172771	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
1.54902-8	chr10	134271951	134272450	+	0	NA	Intergenic	Intergenic	13486	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
2.78189-15	chr1	33829386	33829885	+	0	NA	TTS (NR_125978)	TTS (NR_125978)	11559	NM_001330488	1912	Hs.524271	NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
0.550241-36	chrX	22704223	22704722	+	0	NA	intron (NR_073010, intron 4 of 11)	intron (NR_073010, intron 4 of 11)	-313606	NM_182699	168400	Hs.434416	NM_182699	ENSG00000184735	DDX53	CAGE|CT26	DEAD-box helicase 53	protein-coding
0.560111-8	chr5	121412744	121413243	+	0	NA	promoter-TSS (NM_001317073)	promoter-TSS (NM_001317073)	-75	NM_001178102	4015	Hs.102267	NM_002317	ENSG00000113083	LOX	AAT10	lysyl oxidase	protein-coding
1.70053-23	chrX	102811836	102812335	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-2204	NR_131236	105373300		NR_131236		LOC105373300	-	uncharacterized LOC105373300	ncRNA
1.19758-8	chr5	16866818	16867317	+	0	NA	intron (NM_012334, intron 2 of 40)	intron (NM_012334, intron 2 of 40)	69318	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
15.6384	chr2	43981405	43981904	+	0	NA	intron (NM_172069, intron 25 of 29)	MLT1J|LTR|ERVL-MaLR	-19524	NM_015522	51626	Hs.371597	NM_015522	ENSG00000138036	DYNC2LI1	CGI-60|D2LIC|LIC3|SRTD15	dynein cytoplasmic 2 light intermediate chain 1	protein-coding
0.282604-11	chr6	138122753	138123252	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-62828	NR_121619	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
0.409586-16	chr12	58130057	58130556	+	0	NA	intron (NM_014770, intron 1 of 17)	CpG	1723	NM_001122772	116986	Hs.302435	NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
2.44125-7	chr20	2851010	2851509	+	0	NA	intron (NM_002836, intron 5 of 27)	L2a|LINE|L2	-2883	NM_080840	5786	Hs.269577	NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase, receptor type A	protein-coding
0.414361-5	chr6	134328162	134328661	+	0	NA	intron (NM_145176, intron 2 of 4)	LTR78|LTR|ERV1	45378	NM_145176	154091	Hs.486508	NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
0.428718-15	chr8	7255239	7255738	+	0	NA	Intergenic	Intergenic	18866	NM_001205266	100289462	Hs.740237	NM_001205266	ENSG00000177257	DEFB4B	DEFB4P	defensin beta 4B	protein-coding
1.45694-3	chr13	34492314	34492813	+	0	NA	intron (NM_181558, intron 8 of 8)	MIRb|SINE|MIR	100357	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
0.472076-26	chr12	90458997	90459496	+	0	NA	Intergenic	Intergenic	117776	NR_135019	105369891	Hs.148998	NR_135019	ENSG00000257725	LOC105369891	-	uncharacterized LOC105369891	ncRNA
1.46302-11	chr3	75668828	75669327	+	0	NA	Intergenic	Intergenic	-10837	NR_031714	100302212		NR_031714		MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
0.579919-5	chr21	38710859	38711358	+	0	NA	Intergenic	Intergenic	-26767	NM_001396	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
0.736576-16	chrUn_gl000231	11420	11919	+	0	NA	NA	Intergenic	NA	NA								
0.629839-6	chr15	67813368	67814267	+	0	NA	promoter-TSS (NR_040055)	promoter-TSS (NR_040055)	295	NM_001143936	145853	Hs.438385	NM_001143936	ENSG00000189227	C15orf61	-	chromosome 15 open reading frame 61	protein-coding
0.909791-8	chrX	23811271	23811770	+	0	NA	Intergenic	Intergenic	10245	NM_002970	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
2.89883-15	chr1	29572221	29572720	+	0	NA	intron (NM_133177, intron 1 of 30)	intron (NM_133177, intron 1 of 30)	9442	NM_001195001	10076	Hs.19718	NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase, receptor type U	protein-coding
0.90444-10	chr5	92915309	92915808	+	0	NA	intron (NR_109818, intron 1 of 6)	CpG	1468	NR_109820	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
1.12946-11	chr7	53552981	53553480	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	326394	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	LINC01446	GS1-179L18.1	long intergenic non-protein coding RNA 1446	ncRNA
2.21849-3	chr7	29385138	29385637	+	0	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-133941	NM_001293075	1124	Hs.654611	NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
2.54925-20	chrX	67698861	67699360	+	0	NA	Intergenic	SVA_A|Other|Other	-19514	NM_001195214	286451	Hs.82719	NM_173834	ENSG00000181704	YIPF6	FinGER6	Yip1 domain family member 6	protein-coding
1.6813-3	chr11	5401897	5402396	+	0	NA	intron (NM_001005567, intron 1 of 4)	intron (NM_001005567, intron 1 of 4)	-8461	NM_001004756	390059	Hs.553731	NM_001004756	ENSG00000184698	OR51M1	HOR5'Beta7|OR11-40	olfactory receptor family 51 subfamily M member 1	protein-coding
6.94649-7	chr3	25835146	25835645	+	0	NA	intron (NM_001145391, intron 3 of 3)	intron (NM_001145391, intron 3 of 3)	3832	NR_026937	54995	Hs.55781	NM_017897	ENSG00000151093	OXSM	FASN2D|KASI|KS	3-oxoacyl-ACP synthase, mitochondrial	protein-coding
1.26098-26	chr16	88715687	88716186	+	0	NA	intron (NM_000101, intron 1 of 5)	intron (NM_000101, intron 1 of 5)	1556	NM_000101	1535	Hs.513803	NM_000101	ENSG00000051523	CYBA	p22-PHOX	cytochrome b-245 alpha chain	protein-coding
52.2475-2	chr11	19759560	19760059	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	21820	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
0.310503-16	chr17	73874646	73875145	+	0	NA	promoter-TSS (NM_033452)	promoter-TSS (NM_033452)	-239	NM_033452	91107	Hs.293660	NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
0.338583-30	chr11	57019160	57019659	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-14482	NR_027991	187	Hs.438311	NM_005161	ENSG00000134817	APLNR	AGTRL1|APJ|APJR|HG11	apelin receptor	protein-coding
7.16699-24	chr2	205007877	205008376	+	0	NA	Intergenic	Intergenic	206655	NM_012092	29851	Hs.56247	NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T-cell costimulator	protein-coding
22.5104-2	chr9	122748576	122749075	+	0	NA	Intergenic	Intergenic	51487	NR_132393	106146149	Hs.638938	NR_132393	ENSG00000261432	LINC01613	n341773	long intergenic non-protein coding RNA 1613	ncRNA
1.54902-6	chr10	32250075	32250574	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-32520	NM_001270696	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
3.35358-4	chr18	59992261	59992760	+	0	NA	promoter-TSS (NM_001278268)	promoter-TSS (NM_001278268)	-10	NM_001278268	8792	Hs.204044	NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER	TNF receptor superfamily member 11a	protein-coding
1.37869-22	chr11	85374722	85375221	+	0	NA	non-coding (NR_028027, exon 1 of 4)	non-coding (NR_028027, exon 1 of 4)	1211	NM_001039618	58487	Hs.535319	NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding
2.652-5	chr5	60627401	60627900	+	0	NA	promoter-TSS (NM_020928)	promoter-TSS (NM_020928)	-450	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	AFND	zinc finger SWIM-type containing 6	protein-coding
10.804-3	chr2	121507202	121507701	+	0	NA	Intergenic	Intergenic	-47416	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
1.19186-19	chrY	234735	235234	+	0	NA	Intergenic	CpG	3599	NR_027232	283981	Hs.575741	NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
2.62013-2	chr1	85462541	85463040	+	0	NA	promoter-TSS (NM_153259)	promoter-TSS (NM_153259)	15	NM_001330647	255231	Hs.591446	NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin 2	protein-coding
1.85752-15	chr5	10534622	10535121	+	0	NA	Intergenic	Intergenic	-12675	NR_134289	389273	Hs.519206	NR_134289	ENSG00000249160	LOC389273	-	uncharacterized LOC389273	ncRNA
0.241089-26	chr15	77197474	77197973	+	0	NA	Intergenic	CpG	-21506	NM_020843	49855	Hs.458986	NM_020843	ENSG00000140386	SCAPER	MSTP063|ZNF291|Zfp291	S-phase cyclin A associated protein in the ER	protein-coding
11.4509-5	chr3	197233891	197234390	+	0	NA	Intergenic	Intergenic	48718	NM_004051	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
27.986	chr4	185252405	185252904	+	0	NA	Intergenic	LTR82B|LTR|ERVL	22476	NR_040108	728175	Hs.590107	NR_040108	ENSG00000180712	LOC728175	-	uncharacterized LOC728175	ncRNA
0.560111-14	chrX	101186372	101186871	+	0	NA	intron (NM_001011657, intron 1 of 6)	CpG	418	NM_001282400	84460	Hs.496512	NM_001011657	ENSG00000166432	ZMAT1	-	zinc finger matrin-type 1	protein-coding
0.0174066-8	chr20	6103282	6103781	+	0	NA	5' UTR (NM_017671, exon 1 of 15)	5' UTR (NM_017671, exon 1 of 15)	660	NM_017671	55612	Hs.472054	NM_017671	ENSG00000101311	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	fermitin family member 1	protein-coding
0.301184	chr7	75317773	75318272	+	0	NA	intron (NM_005338, intron 1 of 30)	intron (NM_005338, intron 1 of 30)	50268	NM_005338	3092	Hs.329266	NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
0.5061-11	chr1	54778386	54778885	+	0	NA	intron (NM_001009955, intron 4 of 16)	intron (NM_001009955, intron 4 of 16)	76519	NR_103541	619518	Hs.591438	NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
1.37869-51	chr17	64760670	64761169	+	0	NA	intron (NM_002737, intron 13 of 16)	intron (NM_002737, intron 13 of 16)	-22271	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
0.996329-10	chr3	192958804	192959303	+	0	NA	promoter-TSS (NR_026877)	promoter-TSS (NR_026877)	136	NM_020386	57110	Hs.36761	NM_020386	ENSG00000127252	HRASLS	A-C1|H-REV107|HRASLS1|HRSL1|HSD28	HRAS like suppressor	protein-coding
0.0130484-12	chr1	234741642	234742141	+	0	NA	3' UTR (NM_182972, exon 2 of 2)	3' UTR (NM_182972, exon 2 of 2)	3380	NM_182972	359948	Hs.350268	NM_182972	ENSG00000168264	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding
6.9897-22	chr14	93230486	93230985	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-15688	NM_005606	5641	Hs.18069	NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
3.8405-5	chr13	46709201	46709700	+	0	NA	intron (NM_002298, intron 13 of 15)	intron (NM_002298, intron 13 of 15)	-30239	NM_001872	1361	Hs.512937	NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
3.85103-22	chr11	89955558	89956057	+	0	NA	intron (NM_012124, intron 1 of 10)	CpG	725	NM_001144073	26973	Hs.22857	NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
2.35824-17	chr6	3825430	3825929	+	0	NA	Intergenic	Intergenic	-23921	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
25.9688-3	chr4	186037008	186037507	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-27160	NM_001151	291	Hs.246506	NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
0.0261362-16	chr6	160147806	160148305	+	0	NA	promoter-TSS (NM_001270533)	promoter-TSS (NM_001270533)	25	NM_001270532	9589	Hs.446091	NM_004906	ENSG00000146457	WTAP	Mum2	Wilms tumor 1 associated protein	protein-coding
1.21478-23	chrX	75393203	75393702	+	0	NA	exon (NM_001300888, exon 2 of 5)	exon (NM_001300888, exon 2 of 5)	681	NM_016500	51260	Hs.370100	NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
3.85103-30	chr1	142834041	142834540	+	0	NA	Intergenic	MER61C|LTR|ERV1	-120685	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
1.67491-4	chr7	100048127	100048626	+	0	NA	Intergenic	Intergenic	13518	NM_001004323	402573	Hs.632306	NM_001004323	ENSG00000185955	C7orf61	-	chromosome 7 open reading frame 61	protein-coding
34.2136	chr4	140722893	140723392	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	136220	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
2.5649-13	chr12	16318265	16318764	+	0	NA	Intergenic	Intergenic	112105	NM_001170798	729025	Hs.692712	NM_001170798	ENSG00000188991	SLC15A5	-	solute carrier family 15 member 5	protein-coding
54.4855	chr14	91686689	91687188	+	0	NA	intron (NM_001286471, intron 13 of 13)	intron (NM_001286471, intron 13 of 13)	23914	NM_001177676	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
4.37707-15	chr8	8085395	8085894	+	0	NA	promoter-TSS (NR_024363)	promoter-TSS (NR_024363)	-448	NR_024361	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
2.82329-9	chr10	45755977	45756476	+	0	NA	Intergenic	SVA_D|Other|Other	54830	NM_001004297	79290	Hs.532435	NM_001004297	ENSG00000256574	OR13A1	-	olfactory receptor family 13 subfamily A member 1	protein-coding
1.22629-25	chr22	20378675	20379174	+	0	NA	exon (NM_001242313, exon 4 of 9)	exon (NM_001242313, exon 4 of 9)	1255	NM_001242313	728229	Hs.376511	NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
4.67246-9	chr3	171547622	171548121	+	0	NA	Intergenic	Intergenic	-13268	NM_001164436	389177	Hs.642307	NM_001164436	ENSG00000186329	TMEM212	-	transmembrane protein 212	protein-coding
2.22573-18	chr8	125685569	125686068	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	54930	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
1.05684-13	chr18	24655722	24656221	+	0	NA	intron (NM_031422, intron 2 of 5)	intron (NM_031422, intron 2 of 5)	109331	NM_001256316	83539	Hs.44584	NM_031422	ENSG00000154080	CHST9	GALNAC4ST-2|GalNAc4ST2	carbohydrate sulfotransferase 9	protein-coding
0.51587	chr13	47261835	47262334	+	0	NA	exon (NM_015116, exon 6 of 19)	exon (NM_015116, exon 6 of 19)	109283	NM_001984	2098	Hs.432491	NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
2.57275-8	chr12	13254205	13254704	+	0	NA	intron (NM_001206842, intron 1 of 5)	CpG	2176	NM_001080554	83445	Hs.240053	NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
1.52427-5	chr5	131400757	131401256	+	0	NA	Intergenic	Intergenic	4659	NM_000588	3562	Hs.694	NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
0.920515-8	chr12	55284037	55284536	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	35987	NM_058173	118430	Hs.348419	NM_058173	ENSG00000172551	MUCL1	SBEM	mucin like 1	protein-coding
1.07905-8	chr11	20376727	20377226	+	0	NA	Intergenic	Intergenic	-8255	NM_006410	10553	Hs.90753	NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
1.63676-4	chr19	38734477	38734976	+	0	NA	Intergenic	Intergenic	12505	NM_033256	94274	Hs.631569	NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
6.1261-4	chr1	203085177	203085676	+	0	NA	Intergenic	Intergenic	-11410	NM_000674	134	Hs.77867	NM_000674	ENSG00000163485	ADORA1	RDC7	adenosine A1 receptor	protein-coding
0.447935-14	chrX	115066359	115066858	+	0	NA	intron (NR_130730, intron 1 of 2)	intron (NR_130730, intron 1 of 2)	18836	NR_132337	642776	Hs.634316	NR_130730	ENSG00000235244	DANT2	-	DXZ4 associated non-coding transcript 2, distal	ncRNA
0.414361-8	chr9	33689933	33690432	+	0	NA	Intergenic	Intergenic	-12764	NR_023917	11191	Hs.493716	NR_023917	ENSG00000237984	PTENP1	PTEN-rs|PTEN2|PTENpg1|PTH2|psiPTEN	phosphatase and tensin homolog pseudogene 1	pseudo
14.908	chr3	151256710	151257209	+	0	NA	Intergenic	Intergenic	26824	NR_049818	100847036		NR_049818	ENSG00000264330	MIR5186	-	microRNA 5186	ncRNA
0.491485-20	chr3	23791969	23792468	+	0	NA	Intergenic	AluJr|SINE|Alu	-55166	NM_182666	7324	Hs.164853	NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
0.105502-9	chr5	1384065	1384564	+	0	NA	Intergenic	Intergenic	-4126	NR_125810	100506791	Hs.146092	NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
0.213631-9	chr3	152016583	152017082	+	0	NA	promoter-TSS (NM_207297)	promoter-TSS (NM_207297)	-362	NM_207293	4154	Hs.201858	NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
20.3716	chr11	76315168	76316028	+	0	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	65446	NM_005512	2615	Hs.151641	NM_005512	ENSG00000137507	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
3.18759-3	chr7	2559074	2559573	+	0	NA	promoter-TSS (NM_001040168)	promoter-TSS (NM_001040168)	-156	NM_001040168	3955	Hs.159142	NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
6.38272-4	chr9	95946156	95946655	+	0	NA	promoter-TSS (NM_006648)	promoter-TSS (NM_006648)	-807	NM_001282394	65268	Hs.654856	NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
26.9465-4	chr12	3333534	3334033	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	147262	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
3.63512-10	chr1	212872263	212872990	+	0	NA	intron (NM_018664, intron 1 of 2)	CpG	701	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
3.91474-4	chr10	124027517	124028016	+	0	NA	Intergenic	Intergenic	-3045	NM_144587	118663	Hs.422466	NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
5.00313-6	chr2	86114510	86115009	+	0	NA	intron (NM_003896, intron 1 of 6)	intron (NM_003896, intron 1 of 6)	1398	NM_003896	8869	Hs.415117	NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
0.540393-43	chr6	12290400	12290899	+	0	NA	5' UTR (NM_001168319, exon 1 of 5)	5' UTR (NM_001168319, exon 1 of 5)	120	NM_001955	1906	Hs.511899	NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
11.0237	chr2	182543256	182543755	+	0	NA	exon (NM_002500, exon 2 of 2)	exon (NM_002500, exon 2 of 2)	1887	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
0.400052-21	chr9	125261084	125261583	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-11748	NM_054107	26740	Hs.460145	NM_054107	ENSG00000197233	OR1J2	HG152|HSA5|OR1J3|OR1J5|OR9-19|OST044	olfactory receptor family 1 subfamily J member 2	protein-coding
0.9691	chr7	135132429	135132928	+	0	NA	intron (NM_001008225, intron 1 of 10)	L1MC5|LINE|L1	62197	NM_013316	4850	Hs.490224	NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
0.0305075-65	chr15	76135214	76135713	+	0	NA	promoter-TSS (NM_173469)	promoter-TSS (NM_173469)	-164	NM_173469	92912	Hs.23033	NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
2.74088-12	chr16	66517553	66518052	+	0	NA	intron (NM_001197225, intron 4 of 4)	intron (NM_001197225, intron 4 of 4)	-7497	NR_109960	101927726	Hs.739193	NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
10.5012	chr8	81109263	81109762	+	0	NA	Intergenic	Intergenic	-25618	NM_005079	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
0.177288	chrX	47999004	47999503	+	0	NA	Intergenic	SVA_B|Other|Other	9214	NM_001079900	729201	Hs.319319	NM_001079900	ENSG00000171478	SPACA5B	LYZL5B	sperm acrosome associated 5B	protein-coding
35.3165	chr3	30710836	30711335	+	0	NA	intron (NM_001024847, intron 4 of 7)	LTR9|LTR|ERV1	63091	NM_003242	7048	Hs.82028	NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor beta receptor 2	protein-coding
0.851282-4	chr17	60216108	60216607	+	0	NA	Intergenic	CpG	-73714	NM_005121	9969	Hs.282678	NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
23.6452-2	chr9	123012212	123012711	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-5133	NR_029604	406939		NR_029604	ENSG00000207814	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
36.0033-2	chr7	158032246	158032745	+	0	NA	intron (NM_001308267, intron 2 of 21)	intron (NM_001308267, intron 2 of 21)	293010	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
3.37242-14	chr1	82268483	82268982	+	0	NA	intron (NM_001330645, intron 1 of 20)	CpG	2650	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
0.655015-9	chr1	21058474	21059964	+	0	NA	promoter-TSS (NM_001103160)	promoter-TSS (NM_001103160)	-86	NM_001103160	400745	Hs.591522	NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
7.42321-4	chr2	197675566	197676065	+	0	NA	promoter-TSS (NM_213608)	promoter-TSS (NM_213608)	-815	NM_213608	401027	Hs.245666	NM_213608	ENSG00000187944	C2orf66	IIDS6411|UNQ6411	chromosome 2 open reading frame 66	protein-coding
27.4958-3	chr10	22311115	22311614	+	0	NA	Intergenic	L2|LINE|L2	-18714	NM_022365	64215	Hs.499000	NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
6.43974	chr2	46145981	46146480	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	267187	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
3.59519-7	chr17	59439684	59440183	+	0	NA	intron (NR_136397, intron 2 of 2)	intron (NR_136397, intron 2 of 2)	5132	NR_136397	101927855	Hs.662123	NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
4.15669-11	chr21	45703194	45703693	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2278	NM_000383	326	Hs.129829	NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
12.8819-4	chr1	193501840	193502339	+	0	NA	Intergenic	L1PA15|LINE|L1	228214	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
3.08919-2	chr8	99954036	99954674	+	0	NA	intron (NM_001256312, intron 1 of 12)	CpG	444	NM_001256312	6788	Hs.492333	NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
30.9963	chr5	171991178	171991677	+	0	NA	Intergenic	Intergenic	-76842	NM_001308178	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
8.69666-16	chr11	63870655	63871154	+	0	NA	promoter-TSS (NM_013280)	promoter-TSS (NM_013280)	-458	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
1.37272-8	chr7	102133634	102134133	+	0	NA	intron (NM_001277335, intron 15 of 19)	intron (NM_001277335, intron 15 of 19)	-14502	NM_006234	5439	Hs.654952	NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
0.772745-8	chr7	2671082	2671581	+	0	NA	promoter-TSS (NM_025250)	promoter-TSS (NM_025250)	-272	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
1.27844-11	chr1	117842750	117843249	+	0	NA	intron (NR_126408, intron 2 of 2)	SVA_B|Other|Other	4911	NR_126408	104355292	Hs.576446	NR_126408	ENSG00000235202	LINC01525	lnc-MAN1A2-1	long intergenic non-protein coding RNA 1525	ncRNA
0.721166-11	chr6	149293586	149294085	+	0	NA	intron (NM_005715, intron 5 of 7)	intron (NM_005715, intron 5 of 7)	-8015	NR_038408	100128176	Hs.557541	NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
1.63676-6	chr14	105282138	105282637	+	0	NA	Intergenic	CpG	-5151	NR_024396	196872	Hs.352220	NR_024396	ENSG00000258701	LINC00638	-	long intergenic non-protein coding RNA 638	ncRNA
1.70053-19	chr9	101558538	101559037	+	0	NA	promoter-TSS (NM_173551)	promoter-TSS (NM_173551)	37	NM_173551	203286	Hs.406890	NM_173551	ENSG00000165138	ANKS6	ANKRD14|NPHP16|PKDR1|SAMD6	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding
2.58061	chr17	33307295	33307794	+	0	NA	promoter-TSS (NM_002311)	promoter-TSS (NM_002311)	27	NM_002311	3980	Hs.100299	NM_002311	ENSG00000005156	LIG3	LIG2	DNA ligase 3	protein-coding
0.535477-18	chr15	85176471	85176970	+	0	NA	intron (NR_003654, intron 1 of 3)	CpG	2029	NR_003654	54581	Hs.658114	NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
0.00434512-26	chr16	30366441	30366940	+	0	NA	promoter-TSS (NM_001243646)	promoter-TSS (NM_001243646)	-8	NM_006110	10421	Hs.202677	NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
1.25518-14	chr5	64064187	64064686	+	0	NA	promoter-TSS (NM_173829)	promoter-TSS (NM_173829)	60	NM_173829	285672	Hs.69504	NM_173829	ENSG00000153006	SREK1IP1	P18SRP|SFRS12IP1	SREK1 interacting protein 1	protein-coding
15.6225-2	chr8	63414247	63414746	+	0	NA	intron (NR_130764, intron 1 of 6)	intron (NR_130764, intron 1 of 6)	252995	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding
1.87755-10	chr6	139003677	139004176	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-8879	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	ncRNA
0.79355-18	chr2	87302228	87302727	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	1059	NR_026846	285074	Hs.424184	NM_001012626		LOC285074	-	anaphase promoting complex subunit 1 pseudogene	pseudo
6.10834-2	chr15	93579013	93579512	+	0	NA	Intergenic	Intergenic	37127	NM_001166286	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
18.2391-6	chr16	48565151	48565650	+	0	NA	intron (NR_039970, intron 2 of 4)	intron (NR_039970, intron 2 of 4)	78720	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
1.53663-16	chr6	30688495	30688994	+	0	NA	promoter-TSS (NM_001293212).7	promoter-TSS (NM_001293212).7	-582	NM_001293215	203068	Hs.636480	NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
0.721166-7	chr7	69897559	69898058	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	-699715	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
0.127808-25	chr1	93455941	93456440	+	0	NA	Intergenic	Intergenic	-29111	NM_001006605	388650	Hs.180946	NM_001006605	ENSG00000154511	FAM69A	-	family with sequence similarity 69 member A	protein-coding
4.25969-10	chr2	183988341	183988840	+	0	NA	promoter-TSS (NM_001287585)	promoter-TSS (NM_001287585)	-493	NM_138285	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
0.846002	chr1	205198559	205199058	+	0	NA	intron (NM_001242925, intron 1 of 4)	intron (NM_001242925, intron 1 of 4)	749	NM_001242925	9911	Hs.6360	NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
3.60514-2	chr17	16390076	16390575	+	0	NA	intron (NM_207387, intron 1 of 2)	intron (NM_207387, intron 1 of 2)	5180	NM_001113567	388341	Hs.25425	NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
6.14394-7	chr6	30189227	30189726	+	0	NA	Intergenic	SVA_A|Other|Other	-8205	NM_003449	7726	Hs.485041	NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
0.213631-6	chr13	50510687	50511186	+	0	NA	promoter-TSS (NR_023351)	promoter-TSS (NR_023351)	-299	NM_020456	57213	Hs.44235	NM_020456	ENSG00000123178	SPRYD7	C13orf1|CLLD6	SPRY domain containing 7	protein-coding
0.419142-29	chr17	44268898	44269397	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	1019	NM_001193466	284058	Hs.648744	NM_015443	ENSG00000120071	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
1.49354-10	chr5	25029016	25029515	+	0	NA	Intergenic	Intergenic	-161797	NR_136209	105374693	Hs.628714	NR_136209		LOC105374693	-	uncharacterized LOC105374693	ncRNA
12.0343-7	chr3	164688227	164688726	+	0	NA	Intergenic	L1PA7|LINE|L1	107807	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase	protein-coding
2.21849-4	chr4	140532449	140532948	+	0	NA	Intergenic	Intergenic	-54224	NM_001204368	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
1.05684-6	chr13	63086247	63086746	+	0	NA	Intergenic	L1PA16|LINE|L1	284329	NR_047029	100874176	Hs.402083	NR_047029		LINC00448	-	long intergenic non-protein coding RNA 448	ncRNA
1.08463-7	chr20	31109444	31109943	+	0	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	11931	NR_110619	101929698	Hs.638392	NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
1.31944-24	chr16	62259534	62260033	+	0	NA	Intergenic	MER66C|LTR|ERV1	-189044	NM_001796	1006	Hs.368322	NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
4.77556	chr6	3259036	3259535	+	0	NA	exon (NM_001135750, exon 1 of 2)	exon (NM_001135750, exon 1 of 2)	123	NM_001128592	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
0.181814-17	chr14	89291377	89291876	+	0	NA	intron (NM_198310, intron 2 of 13)	intron (NM_198310, intron 2 of 13)	1129	NM_144596	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
1.87087-6	chr20	25477595	25478094	+	0	NA	intron (NM_025176, intron 9 of 23)	intron (NM_025176, intron 9 of 23)	88323	NM_025176	22981	Hs.631508	NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding
7.47147-18	chr9	37465541	37466040	+	0	NA	promoter-TSS (NM_014872)	promoter-TSS (NM_014872)	-383	NM_014872	9925	Hs.161276	NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
11.2033-2	chr21	19616965	19617464	+	0	NA	promoter-TSS (NM_001204174)	promoter-TSS (NM_001204174)	64	NM_024944	140578	Hs.283725	NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
0.195421-21	chr1	150293714	150294213	+	0	NA	promoter-TSS (NM_004698)	promoter-TSS (NM_004698)	35	NM_004698	9129	Hs.11776	NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
1.13509-10	chr7	105313216	105313715	+	0	NA	intron (NM_020725, intron 3 of 11)	intron (NM_020725, intron 3 of 11)	6144	NM_138495	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
6.49752	chr14	55904679	55905178	+	0	NA	intron (NM_199047, intron 1 of 6)	intron (NM_199047, intron 1 of 6)	2335	NM_199047	387332	Hs.528278	NM_199047	ENSG00000182521	TBPL2	TBP2|TRF3	TATA-box binding protein like 2	protein-coding
0.25028-21	chr4	40899496	40899995	+	0	NA	intron (NM_001166050, intron 10 of 17)	intron (NM_001166050, intron 10 of 17)	-40536	NM_001166053	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
0.118872-56	chr17	71837761	71838260	+	0	NA	Intergenic	Intergenic	-13334	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
2.5649-6	chr2	105868134	105868633	+	0	NA	intron (NM_001328646, intron 11 of 11)	SVA_D|Other|Other	10183	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
38.3565	chr14	45457838	45458337	+	0	NA	intron (NM_015091, intron 1 of 18)	MLT1F1|LTR|ERVL-MaLR	26694	NM_001308120	23116	Hs.371078	NM_015091	ENSG00000198718	FAM179B	KIAA0423	family with sequence similarity 179 member B	protein-coding
1.23205-2	chr14	24740546	24741045	+	0	NA	promoter-TSS (NM_182836)	promoter-TSS (NM_182836)	38	NM_182836	5875	Hs.377992	NM_004581	ENSG00000100949	RABGGTA	PTAR3	Rab geranylgeranyltransferase alpha subunit	protein-coding
40	chr3	194798454	194798953	+	0	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	-16614	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
26.9465-3	chr21	34524615	34525114	+	0	NA	Intergenic	Intergenic	17677	NR_024102	728409	Hs.125234	NR_024102	ENSG00000229086	LINC01548	C21orf54	long intergenic non-protein coding RNA 1548	ncRNA
0.0392635-16	chr5	15003486	15003985	+	0	NA	Intergenic	Intergenic	-131848	NM_054027	56172	Hs.156727	NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
5.39102-9	chr12	77462024	77462523	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-2913	NM_203394	144455	Hs.416375	NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
7.98603-8	chr6	33589430	33589929	+	0	NA	intron (NM_002224, intron 1 of 57)	CpG	523	NM_002224	3710	Hs.65758	NM_002224	ENSG00000096433	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
1.97226	chr19	12075283	12075782	+	0	NA	promoter-TSS (NM_001012753)	promoter-TSS (NM_001012753)	-337	NM_001012753	284390	Hs.646386	NM_001012753	ENSG00000197054	ZNF763	ZNF|ZNF440L	zinc finger protein 763	protein-coding
0.282604-6	chr11	72475463	72475962	+	0	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-12278	NM_001040118	116985	Hs.503165	NM_015242	ENSG00000186635	ARAP1	CENTD2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
6.45892-9	chr2	206571366	206571865	+	0	NA	intron (NM_018534, intron 2 of 15)	intron (NM_018534, intron 2 of 15)	24391	NM_018534	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
7.85156-10	chr2	223966680	223967179	+	0	NA	Intergenic	Intergenic	50281	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
0.347983-6	chr1	85667521	85668020	+	0	NA	Intergenic	Intergenic	-1042	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
5.63837-2	chrY	26673392	26673891	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	42162	NR_002179	474152	Hs.741142	NR_002179	ENSG00000223641	TTTY17C	NCRNA00142	testis-specific transcript, Y-linked 17C (non-protein coding)	ncRNA
2.42604-3	chr7	4681426	4681925	+	0	NA	Intergenic	CpG	-40255	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
4.55932-16	chr22	31739123	31739622	+	0	NA	intron (NM_032052, intron 1 of 4)	intron (NM_032052, intron 1 of 4)	2877	NM_032051	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
9.28118-7	chr2	114067519	114068018	+	0	NA	Intergenic	Intergenic	-31270	NM_013952	7849	Hs.469728	NM_003466	ENSG00000125618	PAX8	-	paired box 8	protein-coding
1.67491-23	chr16	30669050	30669549	+	0	NA	Intergenic	CpG	-1541	NM_001105079	64319	Hs.247186	NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
1.53045-2	chr11	123065784	123066283	+	0	NA	promoter-TSS (NM_024769)	promoter-TSS (NM_024769)	-20	NM_024769	79827	Hs.591949	NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
0.94744-20	chr2	39346774	39347273	+	0	NA	intron (NM_005633, intron 1 of 22)	intron (NM_005633, intron 1 of 22)	581	NM_005633	6654	Hs.709893	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
1.10138-10	chr6	15674961	15675460	+	0	NA	Intergenic	Intergenic	-11921	NM_001271669	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
0.0261362-22	chr14	105881262	105881761	+	0	NA	Intergenic	CpG	4565	NR_125384	100507437	Hs.676548	NR_125384	ENSG00000251602	LOC100507437	-	uncharacterized LOC100507437	ncRNA
0.2365-4	chr12	3409094	3409593	+	0	NA	Intergenic	Intergenic	-81172	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
12.5964-4	chr6	57217990	57218489	+	0	NA	intron (NM_000947, intron 5 of 14)	intron (NM_000947, intron 5 of 14)	35824	NM_000947	5558	Hs.654580	NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	primase (DNA) subunit 2	protein-coding
0.639892-18	chr15	75321564	75322063	+	0	NA	intron (NM_001301103, intron 2 of 3)	intron (NM_001301103, intron 2 of 3)	5917	NM_001301102	60490	Hs.458922	NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
15.9176	chr5	150162932	150163431	+	0	NA	intron (NM_032947, intron 1 of 1)	intron (NM_032947, intron 1 of 1)	5673	NM_032947	85027	Hs.29444	NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
1.0902-15	chr12	122150399	122150898	+	0	NA	promoter-TSS (NM_001080825)	promoter-TSS (NM_001080825)	-10	NM_001080825	144404	Hs.644504	NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
0.609802-10	chr14	56805320	56805819	+	0	NA	Intergenic	Intergenic	-175480	NR_135241	101927690	Hs.385477	NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
1.11821-17	chr3	32464427	32464926	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	31513	NM_181472	112616	Hs.440494	NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
2.652-10	chr8	95198913	95199412	+	0	NA	intron (NM_004063, intron 3 of 17)	intron (NM_004063, intron 3 of 17)	21653	NM_004063	1015	Hs.591853	NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
26.073	chr8	133425897	133426396	+	0	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	33363	NM_001204824	3786	Hs.374023	NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
0.0788851-17	chr5	114433725	114434224	+	0	NA	Intergenic	Intergenic	71686	NM_001300759	55521	Hs.519514	NM_018700	ENSG00000152503	TRIM36	HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
2.97569-2	chr6	95664969	95665468	+	0	NA	Intergenic	Intergenic	360109	NR_104136	101927288	Hs.616643	NR_047502	ENSG00000261366	MANEA-AS1	-	MANEA antisense RNA 1 (head to head)	ncRNA
8.66461-6	chr8	136048296	136048795	+	0	NA	Intergenic	L2c|LINE|L2	186367	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
1.14639-13	chr22	35745287	35745786	+	0	NA	Intergenic	Intergenic	-12744	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
0.888424-23	chr3	52483696	52484195	+	0	NA	Intergenic	Intergenic	4112	NM_003280	7134	Hs.118845	NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C1, slow skeletal and cardiac type	protein-coding
1.67491-30	chr11	118798657	118799156	+	0	NA	Intergenic	Intergenic	-17293	NM_182557	283149	Hs.414740	NM_182557	ENSG00000186174	BCL9L	BCL9-2|DLNB11	B-cell CLL/lymphoma 9-like	protein-coding
25.9688	chr11	106492173	106492672	+	0	NA	Intergenic	Intergenic	370288	NR_120551	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
8.38632	chr3	138313302	138313801	+	0	NA	promoter-TSS (NM_001288964)	promoter-TSS (NM_001288964)	-326	NM_001288965	80321	Hs.531962	NM_024491	ENSG00000114107	CEP70	BITE	centrosomal protein 70	protein-coding
2.31362-5	chr3	124847830	124848329	+	0	NA	intron (NM_024628, intron 6 of 13)	intron (NM_024628, intron 6 of 13)	22317	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
0.457575-4	chr12	132674148	132674647	+	0	NA	Intergenic	CpG	16176	NM_021808	50614	Hs.301062	NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
0.888424-24	chr5	175571546	175572045	+	0	NA	intron (NR_036494, intron 25 of 25)	L4|LINE|RTE	25243	NR_038402	100507387	Hs.368516	NR_038402	ENSG00000182230	LOC100507387	-	uncharacterized LOC100507387	ncRNA
2.1254-7	chr18	73130220	73130719	+	0	NA	intron (NM_001303482, intron 2 of 2)	intron (NM_001303482, intron 2 of 2)	9189	NM_001037331	284274	Hs.666744	NM_001037331	ENSG00000206026	SMIM21	C18orf62	small integral membrane protein 21	protein-coding
2.07608-4	chr14	39170565	39171064	+	0	NA	Intergenic	L1MA2|LINE|L1	-180985	NR_135256	105370457	Hs.128254	NR_135256		LOC105370457	-	uncharacterized LOC105370457	ncRNA
10.013	chr6	122685190	122685689	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-35257	NM_004506	3298	Hs.158195	NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
2.48721-14	chr10	527137	527636	+	0	NA	intron (NM_014974, intron 2 of 36)	intron (NM_014974, intron 2 of 36)	160332	NR_049884	100847086		NR_049884	ENSG00000263511	MIR5699	mir-5699	microRNA 5699	ncRNA
0.639892-9	chr5	167667093	167667592	+	0	NA	intron (NM_001080428, intron 21 of 24)	intron (NM_001080428, intron 21 of 24)	-7965	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
8.69666-9	chr5	97463943	97464442	+	0	NA	Intergenic	MIRb|SINE|MIR	623792	NR_105028	102546227	Hs.582516	NR_105028	ENSG00000250331	LINC01340	-	long intergenic non-protein coding RNA 1340	ncRNA
2.43364-7	chr1	181149076	181149575	+	0	NA	intron (NR_125966, intron 2 of 2)	intron (NR_125966, intron 2 of 2)	5705	NR_125966	101928973	Hs.637822	NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
2.74905-4	chr6	130585326	130585825	+	0	NA	intron (NM_001258275, intron 2 of 13)	Harlequin-int|LTR|ERV1	-41476	NM_001017373	154075	Hs.440508	NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
3.00162-15	chr8	21968787	21969286	+	0	NA	Intergenic	MIRc|SINE|MIR	-2104	NM_024815	79873	Hs.527101	NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
7.21246-3	chr5	11504799	11505298	+	0	NA	intron (NR_109988, intron 3 of 21)	intron (NR_109988, intron 3 of 21)	83981	NM_001288715	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
42.4109-2	chr3	194967264	194967763	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	1136	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
3.5164-11	chr12	125001779	125002278	+	0	NA	intron (NM_001077261, intron 2 of 47)	CpG	49982	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
4.25969-11	chr3	123066410	123066909	+	0	NA	exon (NM_001199642, exon 3 of 21)	exon (NM_001199642, exon 3 of 21)	68530	NM_001199642	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
0.0877392-24	chr2	236323010	236323509	+	0	NA	Intergenic	L2c|LINE|L2	-79474	NM_001244888	116987	Hs.435039	NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
0.540393-46	chr5	34656223	34656722	+	0	NA	promoter-TSS (NM_001145522)	promoter-TSS (NM_001145522)	39	NM_015577	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.0174066-9	chr7	107204210	107204709	+	0	NA	promoter-TSS (NM_181581)	promoter-TSS (NM_181581)	57	NR_073003	11062	Hs.97627	NM_181581	ENSG00000105865	DUS4L	DUS4|PP35	dihydrouridine synthase 4 like	protein-coding
3.86158-6	chr4	154265674	154266544	+	0	NA	intron (NR_045605, intron 1 of 9)	CpG	308	NR_045605	84057	Hs.294088	NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
1.27261-10	chr6	30654917	30655416	+	0	NA	promoter-TSS (NM_001134870)	promoter-TSS (NM_001134870)	-73	NM_001134870	170954	Hs.101150	NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
0.0130484-47	chr8	109085301	109085800	+	0	NA	intron (NM_178565, intron 2 of 5)	intron (NM_178565, intron 2 of 5)	8617	NM_001317942	340419	Hs.444834	NM_178565	ENSG00000147655	RSPO2	CRISTIN2	R-spondin 2	protein-coding
20.8355-2	chr6	157010372	157010871	+	0	NA	Intergenic	MIR|SINE|MIR	-88368	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
2.43364-2	chr5	13052834	13053333	+	0	NA	Intergenic	LTR9B|LTR|ERV1	385112	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
0.93665-11	chr5	5126509	5127008	+	0	NA	Intergenic	LTR53|LTR|ERVL	13409	NR_109915	101929176	Hs.208717	NR_109915		CTD-2297D10.2	-	uncharacterized LOC101929176	ncRNA
2.35824-3	chr8	56986950	56987449	+	0	NA	promoter-TSS (NM_001023)	promoter-TSS (NM_001023)	-59	NM_001146227	6224	Hs.8102	NM_001023	ENSG00000008988	RPS20	S20	ribosomal protein S20	protein-coding
1.34304-6	chr12	33475435	33475934	+	0	NA	Intergenic	LTR9|LTR|ERV1	117070	NM_198992	341359	Hs.118703	NM_198992	ENSG00000110975	SYT10	-	synaptotagmin 10	protein-coding
1.64944-2	chr12	110906792	110907291	+	0	NA	promoter-TSS (NM_016301)	promoter-TSS (NM_016301)	-515	NM_001164372	51184	Hs.634680	NM_016301	ENSG00000111231	GPN3	ATPBD1C	GPN-loop GTPase 3	protein-coding
3.48722-8	chr20	37101501	37102000	+	0	NA	intron (NM_020336, intron 1 of 29)	intron (NM_020336, intron 1 of 29)	301	NM_001282917	57148	Hs.598850	NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic beta subunit	protein-coding
4.92144	chr6	34687680	34688179	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	23207	NR_134626	101929243	Hs.643498	NR_134625	ENSG00000272288	LOC101929243	-	uncharacterized LOC101929243	ncRNA
7.59451-4	chr2	27375899	27376398	+	0	NA	TTS (NM_175769)	TTS (NM_175769)	4203	NM_175769	150921	Hs.591583	NM_175769	ENSG00000163792	TCF23	OUT|TCF-23|bHLHa24	transcription factor 23	protein-coding
1.85087-2	chr7	95402107	95402606	+	0	NA	intron (NM_001278422, intron 1 of 15)	CpG	538	NM_001278421	1780	Hs.440364	NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
16.3451-6	chr10	124913559	124914058	+	0	NA	promoter-TSS (NM_004725)	promoter-TSS (NM_004725)	48	NM_004725	9184	Hs.418533	NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3, mitotic checkpoint protein	protein-coding
7.79892	chr22	21568258	21568757	+	0	NA	Intergenic	AluJr|SINE|Alu	47315	NR_108107	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B (non-protein coding)	ncRNA
2.22573-10	chr3	107824669	107825168	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-14983	NM_198793	961	Hs.446414	NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
2.93282-4	chr3	104315371	104315870	+	0	NA	Intergenic	Intergenic	-369515	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
17.8516-2	chr2	155089719	155090218	+	0	NA	intron (NM_001301627, intron 2 of 11)	intron (NM_001301627, intron 2 of 11)	223982	NM_001256368	100144595	Hs.683952	NM_001256368		LOC100144595	-	uncharacterized LOC100144595	protein-coding
3.94695-4	chr4	179328420	179328919	+	0	NA	Intergenic	L1PA15|LINE|L1	-499579	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
7.82516-6	chr12	104502868	104503367	+	0	NA	Intergenic	Intergenic	-15936	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
6.36388-2	chr17	7198038	7198537	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-411	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
0.277972-5	chr3	5933322	5933821	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-641631	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
0.51587-5	chr3	14330999	14331498	+	0	NA	Intergenic	Intergenic	62820	NR_110135	101927565	Hs.306905	NR_110135	ENSG00000251576	LINC01267	-	long intergenic non-protein coding RNA 1267	ncRNA
56.8403	chr2	205887690	205888189	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	477423	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
4.55932-10	chr1	86881949	86882448	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-7368	NM_006536	9635	Hs.241551	NM_006536	ENSG00000137975	CLCA2	CACC|CACC3|CLCRG2|CaCC-3	chloride channel accessory 2	protein-coding
1.78486-3	chr9	92799284	92799783	+	0	NA	intron (NR_038882, intron 1 of 3)	intron (NR_038882, intron 1 of 3)	4248	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
1.43876	chr14	77534498	77534997	+	0	NA	TTS (NR_110553)	TTS (NR_110553)	7787	NR_110553	102724190	Hs.562528	NR_110553	ENSG00000258819	LOC102724190	-	uncharacterized LOC102724190	ncRNA
0.33389-15	chr5	34695273	34695772	+	0	NA	intron (NM_001145525, intron 4 of 19)	MLT1J1|LTR|ERVL-MaLR	7858	NM_001145523	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.438316-15	chr3	27524565	27525333	+	0	NA	intron (NR_135541, intron 1 of 23)	CpG	962	NM_001321105	9497	Hs.250072	NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
3.41989-4	chr2	84686390	84686889	+	0	NA	promoter-TSS (NM_003849)	promoter-TSS (NM_003849)	-53	NM_003849	8802	Hs.270428	NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase alpha subunit	protein-coding
8.26814-4	chr10	52384240	52384807	+	0	NA	promoter-TSS (NR_126411)	promoter-TSS (NR_126411)	-188	NR_126411	104355295	Hs.450493	NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
20.4866	chr3	143848330	143848829	+	0	NA	Intergenic	Intergenic	156412	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
0.32452-5	chr7	43300840	43301339	+	0	NA	intron (NM_015052, intron 3 of 29)	intron (NM_015052, intron 3 of 29)	110595	NR_037508	100500829		NR_037508	ENSG00000264069	MIR3943	-	microRNA 3943	ncRNA
3.28827-10	chr2	138464461	138464960	+	0	NA	Intergenic	MER52A|LTR|ERV1	220792	NR_120402	101928273	Hs.560928	NR_120402		LOC101928273	-	uncharacterized LOC101928273	ncRNA
1.53663-34	chr4	187122672	187123362	+	0	NA	intron (NM_207352, intron 7 of 10)	intron (NM_207352, intron 7 of 10)	10343	NM_207352	285440	Hs.587231	NM_207352	ENSG00000145476	CYP4V2	BCD|CYP4AH1	cytochrome P450 family 4 subfamily V member 2	protein-coding
0.172766-20	chr14	36987604	36988103	+	0	NA	promoter-TSS (NR_103710)	promoter-TSS (NR_103710)	-630	NR_103710	100506237	Hs.94367	NR_103710	ENSG00000253563	NKX2-1-AS1	-	NKX2-1 antisense RNA 1	ncRNA
0.545314-21	chr5	159640452	159640951	+	0	NA	intron (NM_001040442, intron 1 of 5)	MLT1M|LTR|ERVL-MaLR	14653	NM_001040442	2172	Hs.519719	NM_001445	ENSG00000170231	FABP6	I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP	fatty acid binding protein 6	protein-coding
1.00727-2	chr4	113990577	113991076	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	20041	NM_020977	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
0.8302	chr9	140382217	140382716	+	0	NA	intron (NM_152286, intron 19 of 33)	intron (NM_152286, intron 19 of 33)	-28680	NM_001130970	26012	Hs.455336	NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
7.28158-11	chr20	61585458	61585957	+	0	NA	intron (NM_001302643, intron 2 of 13)	intron (NM_001302643, intron 2 of 13)	1708	NM_022082	63910	Hs.512686	NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
0.0130484-29	chr14	56798473	56798972	+	0	NA	Intergenic	Intergenic	-182327	NR_135241	101927690	Hs.385477	NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
4.47332-5	chr2	172734899	172735398	+	0	NA	intron (NR_047549, intron 2 of 16)	intron (NR_047549, intron 2 of 16)	15668	NM_003705	8604	Hs.470608	NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|EIEE39	solute carrier family 25 member 12	protein-coding
4.52225-5	chr8	6786038	6786537	+	0	NA	Intergenic	Intergenic	-2689	NM_001926	1671	Hs.711	NM_001926	ENSG00000164822	DEFA6	DEF6|HD-6	defensin alpha 6	protein-coding
5.80044-6	chr9	28127020	28127519	+	0	NA	intron (NM_152570, intron 5 of 6)	MLT1H|LTR|ERVL-MaLR	-553405	NM_145005	203228	Hs.493639	NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENNL72|FTDALS|FTDALS1	chromosome 9 open reading frame 72	protein-coding
5.83359-18	chr1	38231600	38232099	+	0	NA	Intergenic	Intergenic	-1025	NM_001099439	284656	Hs.129435	NM_173641	ENSG00000183317	EPHA10	-	EPH receptor A10	protein-coding
13.3161	chr7	113575785	113576284	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-16952	NM_002711	5506	Hs.458309	NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding
2.05512-17	chr12	95467180	95467679	+	0	NA	promoter-TSS (NM_001127362)	promoter-TSS (NM_001127362)	-25	NM_001032287	7181	Hs.108301	NM_003297	ENSG00000120798	NR2C1	TR2	nuclear receptor subfamily 2 group C member 1	protein-coding
4.40093-7	chrX	57362031	57362530	+	0	NA	intron (NM_174912, intron 4 of 10)	LTR5_Hs|LTR|ERVK	49170	NM_174912	158584	Hs.496205	NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
4.34152-9	chr11	13853133	13853632	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	93028	NR_135052	101928132	Hs.568970	NR_135052	ENSG00000254438	LOC101928132	-	uncharacterized LOC101928132	ncRNA
1.00179-4	chr3	113775221	113775720	+	0	NA	promoter-TSS (NM_001256835)	promoter-TSS (NM_001256835)	-10	NM_020817	57577	Hs.477159	NM_020817	ENSG00000163617	CCDC191	KIAA1407	coiled-coil domain containing 191	protein-coding
1.63676-11	chr16	67474955	67475454	+	0	NA	intron (NM_004691, intron 4 of 7)	intron (NM_004691, intron 4 of 7)	10168	NM_000196	3291	Hs.1376	NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
28.7943-2	chr17	66874665	66875164	+	0	NA	intron (NM_001288985, intron 32 of 39)	intron (NM_001288985, intron 32 of 39)	76619	NM_001288985	10351	Hs.58351	NM_007168	ENSG00000141338	ABCA8	-	ATP binding cassette subfamily A member 8	protein-coding
1.20331-9	chr7	138062967	138063466	+	0	NA	Intergenic	SVA_B|Other|Other	-81863	NM_015905	8805	Hs.490287	NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
0.419142-42	chr19	55896315	55896814	+	0	NA	promoter-TSS (NM_001136134)	promoter-TSS (NM_001136134)	-736	NM_000991	6158	Hs.652114	NM_000991	ENSG00000108107	RPL28	L28	ribosomal protein L28	protein-coding
10.1368-4	chr6	1872749	1873248	+	0	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	262317	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
3.56547-5	chr4	118954269	118954768	+	0	NA	promoter-TSS (NM_004784)	promoter-TSS (NM_004784)	-982	NM_004784	9348	Hs.480596	NM_004784	ENSG00000164100	NDST3	HSST3	N-deacetylase and N-sulfotransferase 3	protein-coding
2.29148-19	chr6	119737406	119737905	+	0	NA	Intergenic	L1PB1|LINE|L1	-66724	NM_005907	4121	Hs.102788	NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
1.51195-4	chr14	64215501	64216000	+	0	NA	Intergenic	LTR9|LTR|ERV1	-20937	NM_030791	81537	Hs.24678	NM_030791	ENSG00000126821	SGPP1	SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
15.7349-2	chr3	135412805	135413304	+	0	NA	Intergenic	Intergenic	-271461	NM_002718	5523	Hs.518155	NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
3.8934-9	chr18	5294386	5295194	+	0	NA	intron (NM_001243704, intron 1 of 3)	CpG	911	NM_001243702	7541	Hs.592340	NM_003409	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
0.783135-14	chr1	1239995	1240494	+	0	NA	intron (NM_030649, intron 1 of 23)	intron (NM_030649, intron 1 of 23)	3025	NM_030649	116983	Hs.535257	NM_030649	ENSG00000131584	ACAP3	CENTB5	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding
0.409586-14	chr17	75032776	75033275	+	0	NA	Intergenic	Intergenic	-51700	NM_001204408	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
4.16801-4	chr1	229002802	229003301	+	0	NA	Intergenic	Intergenic	132227	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
9.66576-17	chr18	42406390	42406889	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	143492	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
15.4975	chr2	220636803	220637302	+	0	NA	Intergenic	Intergenic	134234	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
2.61219-22	chr6	64308343	64308842	+	0	NA	Intergenic	LTR33C|LTR|ERVL	26675	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
0.599818-15	chr8	125212171	125212670	+	0	NA	intron (NR_125420, intron 2 of 2)	intron (NR_125420, intron 2 of 2)	-28657	NR_103547	157376	Hs.662360	NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
9.66576-23	chrX	54068877	54069376	+	0	NA	exon (NM_015107, exon 2 of 22)	exon (NM_015107, exon 2 of 22)	501	NM_001184898	23133	Hs.133352	NM_015107	ENSG00000172943	PHF8	JHDM1F|KDM7B|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
0.486625-6	chr6	64857335	64857834	+	0	NA	intron (NM_001292009, intron 31 of 43)	MLT1I|LTR|ERVL-MaLR	501153	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
0.996329-22	chr12	111638953	111639452	+	0	NA	intron (NM_015267, intron 1 of 21)	intron (NM_015267, intron 1 of 21)	-102744	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
10.1909-4	chr9	45872666	45873165	+	0	NA	Intergenic	L1PA13|LINE|L1	-244028	NR_103714	100289124	Hs.567050	NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
3.03644-6	chr12	52444949	52445448	+	0	NA	promoter-TSS (NM_002135)	promoter-TSS (NM_002135)	12	NM_173157	3164	Hs.524430	NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
16.038-8	chr7	158768393	158768892	+	0	NA	Intergenic	MER52C|LTR|ERV1	-32403	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
1.39662-21	chr19	33568936	33569435	+	0	NA	Intergenic	LTR24|LTR|ERV1	-2601	NM_018025	55094	Hs.466436	NM_018025	ENSG00000076650	GPATCH1	ECGP|GPATC1	G-patch domain containing 1	protein-coding
4.57175	chrX	24497845	24498344	+	0	NA	intron (NM_001142386, intron 1 of 11)	MIRb|SINE|MIR	14750	NM_005391	5165	Hs.296031	NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
6.21602	chr1	33429289	33429788	+	0	NA	intron (NM_001127361, intron 1 of 8)	CpG	876	NM_001127361	127544	Hs.591504	NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
6.92504-7	chr2	133339439	133339938	+	0	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	88255	NM_144586	116372	Hs.432395	NM_144586	ENSG00000150551	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
13.5754	chr1	212121051	212121550	+	0	NA	intron (NM_001199811, intron 17 of 19)	LTR22B|LTR|ERVK	-87595	NM_016448	51514	Hs.656473	NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
7.90485-7	chr7	156151076	156151575	+	0	NA	Intergenic	Intergenic	86957	NR_038232	285889	Hs.407095	NR_038232	ENSG00000233878	LOC285889	-	uncharacterized LOC285889	ncRNA
12.5727	chrUn_gl000225	66669	67168	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1.36083-8	chr5	167956610	167957109	+	0	NA	non-coding (NR_024356, exon 1 of 1)	non-coding (NR_024356, exon 1 of 1)	277	NR_024356	345630	Hs.166262	NR_024356		FBLL1	-	fibrillarin-like 1	pseudo
2.18963-19	chr5	42982048	42982547	+	0	NA	Intergenic	SVA_B|Other|Other	11138	NR_104643	643977	Hs.535791	NR_104643		FLJ32255	-	uncharacterized LOC643977	ncRNA
0.400052-36	chr8	119918368	119918867	+	0	NA	Intergenic	MIR|SINE|MIR	45766	NM_002546	4982	Hs.81791	NM_002546	ENSG00000164761	TNFRSF11B	OCIF|OPG|PDB5|TR1	TNF receptor superfamily member 11b	protein-coding
2.42604-5	chr15	100105387	100105886	+	0	NA	promoter-TSS (NM_005587)	promoter-TSS (NM_005587)	-497	NM_001171894	4205	Hs.268675	NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
3.93619	chr20	2187758	2188257	+	0	NA	exon (NM_001287682, exon 1 of 2)	exon (NM_001287682, exon 1 of 2)	433	NM_001287682	388780	Hs.132163	NM_001287682		LOC388780	-	uncharacterized LOC388780	protein-coding
2.21126-5	chr7	92320835	92321334	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-101376	NR_109929	257415	Hs.18564	NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
1.88425-18	chr4	56411902	56412401	+	0	NA	promoter-TSS (NM_001267843)	promoter-TSS (NM_001267843)	-52	NM_001267843	9575	Hs.436975	NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
1.00727-18	chr1	153498508	153499007	+	0	NA	Intergenic	MER61D|LTR|ERV1	9960	NM_014624	6277	Hs.275243	NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA	S100 calcium binding protein A6	protein-coding
3.81952-6	chr1	246887197	246887696	+	0	NA	promoter-TSS (NM_016002)	promoter-TSS (NM_016002)	68	NM_016002	51097	Hs.498397	NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
1.37869-31	chr3	197091492	197091991	+	0	NA	Intergenic	Intergenic	-65598	NM_001290983	1739	Hs.292549	NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs large MAGUK scaffold protein 1	protein-coding
5.90067-3	chr5	14164377	14165242	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	20998	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
0.0130484-6	chr1	198906323	198906822	+	0	NA	promoter-TSS (NR_040073)	promoter-TSS (NR_040073)	-14	NR_040073	100131234	Hs.711077	NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
6.75718-19	chr17	75733790	75734289	+	0	NA	Intergenic	Intergenic	-9398	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
0.0436481-11	chr7	27170285	27170784	+	0	NA	promoter-TSS (NM_002141)	promoter-TSS (NM_002141)	-135	NM_002141	3201	Hs.533357	NM_002141	ENSG00000197576	HOXA4	HOX1|HOX1D	homeobox A4	protein-coding
8.01343-16	chr11	19373813	19374312	+	0	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	1791	NM_001111018	89797	Hs.64341	NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
0.25028-42	chr12	86266217	86266716	+	0	NA	Intergenic	Intergenic	-1607	NM_006183	4922	Hs.80962	NM_006183	ENSG00000133636	NTS	NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding
3.71611-5	chr2	42217582	42218081	+	0	NA	Intergenic	L2a|LINE|L2	-36888	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
1.98596-8	chr4	57844092	57844591	+	0	NA	promoter-TSS (NM_000938)	promoter-TSS (NM_000938)	-465	NM_001303268	5431	Hs.602757	NM_000938	ENSG00000047315	POLR2B	POL2RB|RPB2|hRPB140	RNA polymerase II subunit B	protein-coding
2.35077-18	chr1	11119953	11120452	+	0	NA	promoter-TSS (NM_003132)	promoter-TSS (NM_003132)	-111	NM_003132	6723	Hs.76244	NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
3.68556-6	chr17	48500993	48501492	+	0	NA	Intergenic	Intergenic	-2277	NM_001288969	80221	Hs.288959	NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
18.2681-4	chr20	3169881	3170380	+	0	NA	TTS (NM_023935)	TTS (NM_023935)	15213	NM_023935	65992	Hs.471975	NM_023935	ENSG00000198171	DDRGK1	C20orf116|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
2.58061-18	chr1	145138796	145139295	+	0	NA	intron (NM_001277444, intron 21 of 25)	intron (NM_001277444, intron 21 of 25)	42638	NM_004892	9554	Hs.632438	NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)	protein-coding
0.599818-37	chr6	58507888	58508387	+	0	NA	Intergenic	Intergenic	-220413	NR_132995	106660612	Hs.561539	NR_125727	ENSG00000215190	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
3.37242-13	chr9	7056664	7057163	+	0	NA	intron (NM_015061, intron 17 of 21)	intron (NM_015061, intron 17 of 21)	299272	NR_130707	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
4.16801	chr2	190700750	190701249	+	0	NA	intron (NR_110332, intron 6 of 12)	intron (NR_110332, intron 6 of 12)	-51902	NM_001128150	94101	Hs.700632	NM_016467	ENSG00000128699	ORMDL1	-	ORMDL sphingolipid biosynthesis regulator 1	protein-coding
1.07905-15	chr18	63154633	63155132	+	0	NA	Intergenic	Intergenic	-262606	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
1.24939-14	chr12	105724121	105724620	+	0	NA	promoter-TSS (NM_001145199)	promoter-TSS (NM_001145199)	-44	NM_001145199	387882	Hs.368938	NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
5.83359-25	chr2	236460519	236461018	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	46373	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
0.777937	chr10	4891769	4892268	+	0	NA	Intergenic	Intergenic	23649	NM_001271025	83592	Hs.657944	NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
1.10698-12	chr19	49999205	49999704	+	0	NA	promoter-TSS (NM_001015)	promoter-TSS (NM_001015)	-168	NM_001015	6205	Hs.433529	NM_001015	ENSG00000142534	RPS11	S11	ribosomal protein S11	protein-coding
10.5799-3	chr15	52301109	52301608	+	0	NA	Intergenic	Intergenic	-10053	NM_002748	5597	Hs.411847	NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
0.296531-140	chr8	123685682	123686181	+	0	NA	intron (NR_126348, intron 2 of 3)	intron (NR_126348, intron 2 of 3)	20414	NR_126348	104266958	Hs.575540	NR_126348	ENSG00000253819	LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
3.43902-8	chr3	180957161	180957660	+	0	NA	intron (NR_075093, intron 2 of 4)	intron (NR_075093, intron 2 of 4)	7885	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
5.25784-9	chr11	46411103	46411602	+	0	NA	Intergenic	CpG	-3194	NM_000741	1132	Hs.248100	NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
1.27261-7	chr13	21476146	21476645	+	0	NA	intron (NM_022459, intron 1 of 22)	intron (NM_022459, intron 1 of 22)	518	NM_022459	64328	Hs.507452	NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
0.0568285-20	chr8	118057764	118058263	+	0	NA	intron (NM_001172815, intron 2 of 10)	intron (NM_001172815, intron 2 of 10)	-89324	NM_001172814	169026	Hs.532270	NM_173851	ENSG00000164756	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 member 8	protein-coding
0.273344-5	chr9	111774298	111775149	+	0	NA	intron (NM_003798, intron 1 of 18)	intron (NM_003798, intron 1 of 18)	1151	NM_001286974	8727	Hs.58488	NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
5.90067-7	chr1	32879464	32879963	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-19651	NM_001300958	55108	Hs.353454	NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
1.78486-6	chr12	120426550	120427049	+	0	NA	promoter-TSS (NM_207311)	promoter-TSS (NM_207311)	-849	NM_207311	92558	Hs.369763	NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
10.9205-3	chr18	29923546	29924045	+	0	NA	intron (NM_022751, intron 2 of 5)	intron (NM_022751, intron 2 of 5)	126652	NM_001242409	64762	Hs.444314	NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding
0.840728-9	chr5	40755836	40756335	+	0	NA	promoter-TSS (NM_012382)	promoter-TSS (NM_012382)	-13	NM_012382	23548	Hs.348915	NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
15.2433-3	chr3	77980326	77980825	+	0	NA	Intergenic	Intergenic	833412	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
2.29148-22	chr15	51634031	51634530	+	0	NA	intron (NM_181789, intron 1 of 9)	CpG	567	NM_181789	342035	Hs.526441	NM_181789	ENSG00000186417	GLDN	CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112	gliomedin	protein-coding
1.29011-14	chr1	47799601	47800100	+	0	NA	intron (NM_001136140, intron 1 of 4)	CpG	381	NM_001136140	51727	Hs.731647	NM_016308	ENSG00000162368	CMPK1	CK|CMK|CMPK|UMK|UMP-CMPK|UMPK	cytidine/uridine monophosphate kinase 1	protein-coding
3.53596-2	chr8	60057157	60057656	+	0	NA	Intergenic	L1M4|LINE|L1	-25639	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
4.4855-15	chr13	50931705	50932204	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	169631	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
0.491485-24	chr4	176986701	176987200	+	0	NA	promoter-TSS (NM_181265)	promoter-TSS (NM_181265)	-35	NM_181265	116966	Hs.532056	NM_170710	ENSG00000150627	WDR17	-	WD repeat domain 17	protein-coding
2.36572-17	chr17	58101205	58101704	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-5041	NR_002924	653645	Hs.448884	NR_002924	ENSG00000267104	TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene	pseudo
1.15771-24	chr1	232346892	232347391	+	0	NA	Intergenic	LTR16A|LTR|ERVL	285561	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
1.15771-20	chr12	94853536	94854465	+	0	NA	promoter-TSS (NM_016122)	promoter-TSS (NM_016122)	221	NR_027035	144486	Hs.118205	NR_027035	ENSG00000278916	CEP83-AS1	CCDC41-AS1	CEP83 antisense RNA 1 (head to head)	ncRNA
11.8709-2	chr8	102506111	102506610	+	0	NA	intron (NM_001330593, intron 1 of 15)	CpG	1692	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding
2.35824-20	chr5	149815566	149816065	+	0	NA	Intergenic	Intergenic	13504	NM_001025070	6208	Hs.744846	NM_005617	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
2.11125	chr1	183396642	183397141	+	0	NA	Intergenic	SVA_A|Other|Other	-9257	NM_015039	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
4.25969-5	chr13	53424354	53424853	+	0	NA	Intergenic	Intergenic	-1828	NM_002590	5100	Hs.19492	NM_002590	ENSG00000136099	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
7.93174-3	chr8	54394594	54395093	+	0	NA	Intergenic	Intergenic	-230586	NM_001318497	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
0.486625-11	chr2	177134038	177134537	+	0	NA	5' UTR (NM_006554, exon 1 of 10)	5' UTR (NM_006554, exon 1 of 10)	164	NM_001319097	10651	Hs.470728	NM_006554	ENSG00000128654	MTX2	-	metaxin 2	protein-coding
1.84422-11	chrX	14047683	14048182	+	0	NA	5' UTR (NM_017856, exon 1 of 5)	5' UTR (NM_017856, exon 1 of 5)	103	NM_017856	54960	Hs.592237	NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
1.64309-7	chr11	133938640	133939139	+	0	NA	promoter-TSS (NM_001205329)	promoter-TSS (NM_001205329)	69	NM_032801	83700	Hs.150718	NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
9.06578-9	chr21	40454365	40454864	+	0	NA	Intergenic	MIRc|SINE|MIR	100826	NM_001320795	8624	Hs.473838	NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
2.30623-16	chrX	102318289	102318788	+	0	NA	intron (NM_018476, intron 2 of 2)	intron (NM_018476, intron 2 of 2)	630	NM_018476	55859	Hs.334370	NM_018476	ENSG00000133169	BEX1	BEX2|HBEX2|HGR74-h	brain expressed X-linked 1	protein-coding
30.9528	chr6	155334543	155335042	+	0	NA	Intergenic	Intergenic	-76631	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
0.222764-23	chr19	51399857	51400356	+	0	NA	promoter-TSS (NR_002948)	promoter-TSS (NR_002948)	-452	NR_002948	606293	Hs.643424	NR_002948	ENSG00000197588	KLKP1	KARMA|KLK31P|KRSP1|PsiKLK1|YKLK1	kallikrein pseudogene 1	pseudo
0.127808-31	chr3	168564936	168565435	+	0	NA	Intergenic	Intergenic	-54548	NR_109989	100507661	Hs.65918	NR_109989	ENSG00000242268	LINC02082	-	long intergenic non-protein coding RNA 2082	ncRNA
8.26814-19	chr6	43662987	43663486	+	0	NA	Intergenic	Intergenic	-7687	NM_018135	55168	Hs.520149	NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRPS18-3|S18bmt	mitochondrial ribosomal protein S18A	protein-coding
0.0524306-2	chr2	241906607	241907106	+	0	NA	promoter-TSS (NR_033841)	promoter-TSS (NR_033841)	12	NR_033841	200772	Hs.647893	NR_033841	ENSG00000233392	LOC200772	-	uncharacterized LOC200772	ncRNA
0.371573-7	chr9	124312742	124313241	+	0	NA	Intergenic	CpG	-16390	NM_032552	153090	Hs.522378	NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
5.83359-11	chr20	25200800	25201299	+	0	NA	intron (NM_001322389, intron 9 of 12)	intron (NM_001322389, intron 9 of 12)	-23521	NR_109994	101926889	Hs.585997	NR_109994		LOC101926889	-	uncharacterized LOC101926889	ncRNA
0.177288-3	chr6	124123694	124124193	+	0	NA	Intergenic	Intergenic	-1048	NM_001300737	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
1.53045-10	chr18	63229029	63229528	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-188210	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
0.305841-4	chr5	90609994	90610493	+	0	NA	promoter-TSS (NR_103548)	promoter-TSS (NR_103548)	-24	NR_103549	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
11.4509-4	chr9	28296335	28296834	+	0	NA	intron (NM_152570, intron 4 of 6)	intron (NM_152570, intron 4 of 6)	422719	NM_152570	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
2.63603	chr6	44041910	44042409	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	230	NR_125864	101929705	Hs.670378	NR_125864	ENSG00000237686	LOC101929705	-	uncharacterized LOC101929705	ncRNA
10.1773-3	chr8	61564681	61565180	+	0	NA	Intergenic	CpG	-26394	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
5.90067-8	chr5	64399013	64399512	+	0	NA	Intergenic	Intergenic	334517	NM_001297644	10283	Hs.371372	NM_005869	ENSG00000153015	CWC27	NY-CO-10|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated protein homolog	protein-coding
0.296531-41	chr7	125574512	125575011	+	0	NA	Intergenic	Intergenic	-670416	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
2.22573-16	chr1	35394503	35395002	+	0	NA	intron (NM_001080418, intron 1 of 11)	CpG	434	NM_001080418	58512	Hs.733945	NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3	DLG associated protein 3	protein-coding
1.01275-3	chrX	118371114	118371613	+	0	NA	intron (NM_001282621, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	1155	NM_001282621	10857	Hs.90061	NM_006667	ENSG00000101856	PGRMC1	HPR6.6|MPR	progesterone receptor membrane component 1	protein-coding
2.76544-9	chr3	183979263	183979762	+	0	NA	promoter-TSS (NM_033259)	promoter-TSS (NM_033259)	-261	NM_033259	94032	Hs.585003	NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
0.0305075-62	chr3	33925568	33926067	+	0	NA	Intergenic	Intergenic	85754	NM_001256192	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
1.49967-24	chr13	27948734	27949233	+	0	NA	Intergenic	Intergenic	-49698	NM_002097	2971	Hs.445977	NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
1.37869-11	chr3	100789044	100789543	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-76959	NM_015429	25890	Hs.477015	NM_015429	ENSG00000154175	ABI3BP	NESHBP|TARSH	ABI family member 3 binding protein	protein-coding
11.0624	chr2	68512060	68512559	+	0	NA	intron (NM_001111101, intron 2 of 2)	intron (NM_001111101, intron 2 of 2)	-32658	NM_000945	5534	Hs.280604	NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
1.81774-13	chr5	95197023	95197522	+	0	NA	Intergenic	Intergenic	9336	NR_026936	202299	Hs.8373	NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
1.27844-7	chr1	234745729	234746228	+	0	NA	promoter-TSS (NM_182972)	promoter-TSS (NM_182972)	-707	NM_001077397	359948	Hs.350268	NM_182972	ENSG00000168264	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding
0.400052-25	chr22	39686848	39687347	+	0	NA	Intergenic	Intergenic	22819	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
13.7161	chr9	94660727	94661226	+	0	NA	intron (NM_004560, intron 1 of 8)	intron (NM_004560, intron 1 of 8)	51468	NM_004560	4920	Hs.98255	NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
14.4249-2	chr11	118900969	118901897	+	0	NA	5' UTR (NM_001164277, exon 2 of 11)	5' UTR (NM_001164277, exon 2 of 11)	183	NM_001164279	2542	Hs.719203	NM_001467	ENSG00000137700	SLC37A4	G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
6.86133-6	chr14	75535740	75536239	+	0	NA	promoter-TSS (NR_110315)	promoter-TSS (NR_110315)	197	NR_126394	97	Hs.18573	NM_001107	ENSG00000119640	ACYP1	ACYPE	acylphosphatase 1	protein-coding
1.32533-2	chr3	112764417	112764916	+	0	NA	Intergenic	SVA_D|Other|Other	-26086	NM_001319112	25871	Hs.591288	NM_015412	ENSG00000163608	NEPRO	C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
2.16811-5	chr3	27708202	27708701	+	0	NA	Intergenic	Intergenic	55755	NM_005442	8320	Hs.591663	NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
0.150229-9	chr3	185827769	185828268	+	0	NA	Intergenic	Intergenic	-1117	NM_004454	2119	Hs.43697	NM_004454	ENSG00000244405	ETV5	ERM	ETS variant 5	protein-coding
1.74574-4	chr11	58421412	58421911	+	0	NA	Intergenic	Intergenic	31515	NM_000614	1270	Hs.524920	NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
1.89096	chr5	131132561	131133060	+	0	NA	promoter-TSS (NM_133372)	promoter-TSS (NM_133372)	-54	NM_001008738	96459	Hs.591273	NM_133372	ENSG00000217128	FNIP1	-	folliculin interacting protein 1	protein-coding
0.282604-16	chr2	65827056	65827555	+	0	NA	Intergenic	SVA_D|Other|Other	-167649	NM_181784	200734	Hs.59332	NM_181784	ENSG00000198369	SPRED2	Spred-2	sprouty related EVH1 domain containing 2	protein-coding
1.4691	chr1	70876863	70877362	+	0	NA	exon (NM_001190463, exon 1 of 11)	exon (NM_001190463, exon 1 of 11)	211	NM_153742	1491	Hs.19904	NM_001902	ENSG00000116761	CTH	-	cystathionine gamma-lyase	protein-coding
3.52617-3	chr17	19078672	19079171	+	0	NA	Intergenic	Intergenic	-12984	NM_001291904	79999	Hs.677375	NM_024934	ENSG00000197665	LOC79999	-	uncharacterized LOC79999	protein-coding
7.14443-9	chr4	81164659	81165158	+	0	NA	Intergenic	Intergenic	-22834	NM_004464	2250	Hs.37055	NM_004464	ENSG00000138675	FGF5	HBGF-5|Smag-82|TCMGLY	fibroblast growth factor 5	protein-coding
0.145735-23	chr8	141017829	141018328	+	0	NA	intron (NM_031466, intron 18 of 22)	intron (NM_031466, intron 18 of 22)	92556	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
2.26945-3	chr9	116844698	116845197	+	0	NA	Intergenic	Intergenic	-4195	NM_001633	259	Hs.436911	NM_001633	ENSG00000106927	AMBP	A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI	alpha-1-microglobulin/bikunin precursor	protein-coding
0.213631-23	chr3	194116567	194117066	+	0	NA	3' UTR (NM_004488, exon 2 of 2)	3' UTR (NM_004488, exon 2 of 2)	3179	NM_004488	2814	Hs.73734	NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
0.296531-138	chr1	87793804	87794303	+	0	NA	promoter-TSS (NM_006769)	promoter-TSS (NM_006769)	-98	NM_006769	8543	Hs.436792	NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
14.034	chr21	44092072	44092571	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	18459	NM_001001576	5152	Hs.473927	NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
8.69666-2	chr9	139063165	139063664	+	0	NA	Intergenic	Intergenic	31605	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
11.4874-2	chr3	160094340	160094839	+	0	NA	intron (NM_020800, intron 4 of 19)	MLT1F1|LTR|ERVL-MaLR	6965	NM_001190242	57560	Hs.478095	NM_020800	ENSG00000068885	IFT80	ATD2|SRTD2|WDR56	intraflagellar transport 80	protein-coding
4.32974-9	chr3	175250293	175250792	+	0	NA	intron (NM_207015, intron 9 of 13)	HERVL-int|LTR|ERVL	163213	NR_039952	100616395		NR_039952	ENSG00000264974	MIR4789	-	microRNA 4789	ncRNA
0.0392635-8	chr9	132388405	132388904	+	0	NA	promoter-TSS (NM_001286799)	promoter-TSS (NM_001286799)	-69	NM_001286799	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
8.23909-2	chr6	162760717	162761216	+	0	NA	intron (NM_013987, intron 2 of 10)	SVA_F|Other|Other	-387198	NM_001080378	135138	Hs.25791	NM_152410	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG	PARK2 coregulated	protein-coding
52.2475	chr12	6948894	6949393	+	0	NA	promoter-TSS (NM_001297571)	promoter-TSS (NM_001297571)	-875	NM_002075	2784	Hs.631657	NM_002075	ENSG00000111664	GNB3	CSNB1H	G protein subunit beta 3	protein-coding
2.25483-5	chr16	75454756	75455255	+	0	NA	intron (NM_006324, intron 1 of 6)	MER61A|LTR|ERV1	12382	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
15.0446-5	chr11	95069096	95069595	+	0	NA	Intergenic	LTR72|LTR|ERV1	-103640	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
1.49354-7	chr8	66949475	66949974	+	0	NA	intron (NM_033105, intron 1 of 5)	intron (NM_033105, intron 1 of 5)	15933	NM_033105	85479	Hs.491885	NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
0.835461-9	chr13	42845786	42846285	+	0	NA	promoter-TSS (NM_016248)	promoter-TSS (NM_016248)	-254	NM_016248	11215	Hs.105105	NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
3.9794-13	chr7	130353190	130353689	+	0	NA	TTS (NM_052933)	TTS (NM_052933)	159	NM_012133	26958	Hs.6421	NM_012133	ENSG00000158623	COPG2	2-COP|gamma-2-COP	coatomer protein complex subunit gamma 2	protein-coding
3.90406-13	chr7	35505513	35506012	+	0	NA	Intergenic	Intergenic	152296	NR_038864	401324	Hs.377034	NR_038864		LOC401324	-	uncharacterized LOC401324	ncRNA
9.87163-16	chr8	139830891	139831390	+	0	NA	intron (NM_152888, intron 7 of 64)	intron (NM_152888, intron 7 of 64)	95109	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
20.6198-2	chr7	137489650	137490149	+	0	NA	intron (NM_001321708, intron 1 of 32)	intron (NM_001321708, intron 1 of 32)	41179	NM_001321709	9162	Hs.242947	NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding
0.721166-4	chr5	34538015	34538514	+	0	NA	Intergenic	LTR27|LTR|ERV1	-118169	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.594835-22	chr17	74381332	74381831	+	0	NA	exon (NM_182965, exon 2 of 6)	exon (NM_182965, exon 2 of 6)	292	NM_001142602	8877	Hs.68061	NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
7.98603-5	chr10	5973003	5973502	+	0	NA	intron (NM_032807, intron 20 of 21)	intron (NM_032807, intron 20 of 21)	36903	NM_032807	84893	Hs.498543	NM_032807	ENSG00000134452	FBXO18	FBH1|Fbx18|hFBH1	F-box protein, helicase, 18	protein-coding
23.0892-2	chr12	117407615	117408114	+	0	NA	intron (NM_153348, intron 5 of 10)	intron (NM_153348, intron 5 of 10)	17278	NR_103809	100506551	Hs.657861	NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
0.414361-9	chr17	63051759	63052258	+	0	NA	promoter-TSS (NM_001282425)	promoter-TSS (NM_001282425)	-116	NM_001282425	10672	Hs.515018	NM_006572	ENSG00000120063	GNA13	G13	G protein subunit alpha 13	protein-coding
6.73664-6	chr16	4032946	4033445	+	0	NA	intron (NM_001116, intron 7 of 10)	intron (NM_001116, intron 7 of 10)	-32750	NR_120311	102724927	Hs.364739	NR_120311	ENSG00000262185	LOC102724927	-	uncharacterized LOC102724927	ncRNA
4.42493-19	chr13	45090879	45091378	+	0	NA	intron (NM_183422, intron 1 of 2)	intron (NM_183422, intron 1 of 2)	-42691	NM_001243798	8848	Hs.436383	NM_006022	ENSG00000102804	TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
8.76148-5	chr6	78271539	78272038	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-88203	NM_001282136	101928601	Hs.544538	NM_001282136	ENSG00000269964	MEI4	-	meiotic double-stranded break formation protein 4	protein-coding
10.8884-2	chr17	7591284	7591783	+	0	NA	promoter-TSS (NM_018081)	promoter-TSS (NM_018081)	-134	NM_001143992	55135	Hs.408312	NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
9.1364-17	chr4	2363402	2363901	+	0	NA	intron (NM_001172657, intron 1 of 6)	intron (NM_001172657, intron 1 of 6)	2953	NM_001172659	57732	Hs.292056	NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2	zinc finger FYVE-type containing 28	protein-coding
0.757207-2	chrX	103086987	103087486	+	0	NA	promoter-TSS (NM_016370)	promoter-TSS (NM_016370)	-24	NM_016370	51209	Hs.522736	NM_016370	ENSG00000123570	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
3.41035-3	chr2	198483987	198484486	+	0	NA	intron (NM_144629, intron 5 of 8)	SVA_D|Other|Other	56348	NM_144629	130132	Hs.591615	NM_144629	ENSG00000162944	RFTN2	C2orf11|Raftlin-2	raftlin family member 2	protein-coding
0.721166-2	chr1	90098095	90098594	+	0	NA	promoter-TSS (NM_032270)	promoter-TSS (NM_032270)	109	NR_033981	400761	Hs.741594	NR_033981	ENSG00000231999	FLJ27354	-	uncharacterized LOC400761	ncRNA
1.79799-3	chr15	71055644	71056143	+	0	NA	promoter-TSS (NM_018003)	promoter-TSS (NM_018003)	-43	NM_018003	55075	Hs.108049	NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
4.65974-11	chr6	52368509	52369479	+	0	NA	intron (NM_012288, intron 10 of 10)	intron (NM_012288, intron 10 of 10)	72868	NM_012288	9697	Hs.520182	NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
1.78486-10	chr21	47813345	47813844	+	0	NA	intron (NM_001315529, intron 21 of 46)	intron (NM_001315529, intron 21 of 46)	-65268	NM_206891	23181	Hs.189585	NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
1.43876-4	chr12	48298653	48299152	+	0	NA	promoter-TSS (NM_000376)	promoter-TSS (NM_000376)	-88	NM_000376	7421	Hs.524368	NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D (1,25- dihydroxyvitamin D3) receptor	protein-coding
2.28413-2	chr9	123399228	123399727	+	0	NA	intron (NM_001080497, intron 2 of 5)	SVA_B|Other|Other	-57029	NM_018249	55755	Hs.269560	NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
1.96543-6	chr12	114290829	114291328	+	0	NA	intron (NM_001146699, intron 22 of 24)	intron (NM_001146699, intron 22 of 24)	-79590	NR_110026	100506465	Hs.211461	NR_110025	ENSG00000249550	LINC01234	LCAL84|onco-lncRNA-32	long intergenic non-protein coding RNA 1234	ncRNA
0.195421-6	chr9	34074119	34074618	+	0	NA	Intergenic	Intergenic	-25421	NM_001282529	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
13.0103	chr11	44338289	44338788	+	0	NA	Intergenic	CpG	-6822	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
0.0788851-2	chr20	20350003	20350502	+	0	NA	exon (NM_002196, exon 1 of 1)	exon (NM_002196, exon 1 of 1)	1487	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
23.9903-2	chr3	156130979	156131478	+	0	NA	intron (NM_172159, intron 1 of 13)	MIR|SINE|MIR	33497	NR_046618	100874084	Hs.131282	NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
0.231917-38	chr19	2977104	2977603	+	0	NA	promoter-TSS (NM_001143986)	promoter-TSS (NM_001143986)	-178	NR_138612	79816	Hs.334507	NM_024760	ENSG00000104953	TLE6	GRG6|PREMBL	transducin like enhancer of split 6	protein-coding
0.190881-21	chrX	49042624	49043123	+	0	NA	promoter-TSS (NM_006150)	promoter-TSS (NM_006150)	-20	NM_006150	4007	Hs.732712	NM_006150	ENSG00000012211	PRICKLE3	LMO6	prickle planar cell polarity protein 3	protein-coding
3.64516-11	chr4	6964952	6965451	+	0	NA	intron (NM_001330638, intron 1 of 12)	intron (NM_001330638, intron 1 of 12)	9308	NM_001330638	57533	Hs.518611	NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
1.59894-19	chr14	83600562	83601061	+	0	NA	Intergenic	Intergenic	-1511406	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
0.32452-16	chr9	69259533	69260032	+	0	NA	intron (NM_001085457, intron 1 of 14)	intron (NM_001085457, intron 1 of 14)	2811	NM_001085457	644019	Hs.597638	NM_001085457	ENSG00000215126	CBWD6	-	COBW domain containing 6	protein-coding
26.5758	chr21	9930153	9930652	+	0	NA	intron (NR_038329, intron 2 of 2)	L1P4|LINE|L1	38192	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
5.05845-2	chr1	93497237	93497736	+	0	NA	Intergenic	Intergenic	-47306	NM_001164392	22823	Hs.31016	NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
2.84833-11	chr2	44395364	44395863	+	0	NA	promoter-TSS (NM_002706)	promoter-TSS (NM_002706)	-329	NM_177969	5495	Hs.416769	NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
7.37549-9	chr1	208905544	208906043	+	0	NA	Intergenic	Intergenic	-488128	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
0.366845-23	chr5	43483546	43484045	+	0	NA	intron (NM_022483, intron 1 of 2)	CpG	197	NM_022483	64417	Hs.732093	NM_022483	ENSG00000151881	TMEM267	C5orf28	transmembrane protein 267	protein-coding
2.00659-10	chr1	236849522	236850021	+	0	NA	promoter-TSS (NM_001103)	promoter-TSS (NM_001103)	17	NM_001278344	88	Hs.498178	NM_001103	ENSG00000077522	ACTN2	CMD1AA|CMH23	actinin alpha 2	protein-coding
0.338583-10	chr14	20937277	20937776	+	0	NA	promoter-TSS (NM_000270)	promoter-TSS (NM_000270)	-12	NM_000270	4860	Hs.75514	NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
20.7727-2	chr17	8055600	8056099	+	0	NA	promoter-TSS (NM_002616)	promoter-TSS (NM_002616)	-96	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
5.0307-3	chr20	704358	704857	+	0	NA	Intergenic	Intergenic	44621	NM_033409	113278	Hs.283865	NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
0.660068-8	chr8	140818962	140819461	+	0	NA	intron (NM_031466, intron 21 of 22)	intron (NM_031466, intron 21 of 22)	-103912	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
3.09804-5	chr9	124260316	124260815	+	0	NA	intron (NR_003191, intron 1 of 6)	intron (NR_003191, intron 1 of 6)	1741	NR_045211	2681	Hs.97469	NR_003191	ENSG00000204136	GGTA1P	GGTA|GGTA1|GLYT2|a1/3GTP	glycoprotein, alpha-galactosyltransferase 1 pseudogene	pseudo
0.400052-46	chrX	3880821	3881320	+	0	NA	Intergenic	Intergenic	-119135	NR_034031	389906	Hs.636199	NM_001045547		LOC389906	-	zinc finger protein 839 pseudogene	pseudo
1.02373-2	chr5	6772915	6773414	+	0	NA	Intergenic	Intergenic	27063	NM_001171806	11044	Hs.481542	NM_006999	ENSG00000112941	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	poly(A) RNA polymerase D7, non-canonical	protein-coding
12.6122-2	chr3	136602757	136603256	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	21956	NM_006153	4690	Hs.126889	NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
2.71646-9	chr1	161136551	161137050	+	0	NA	intron (NM_001122764, intron 2 of 12)	intron (NM_001122764, intron 2 of 12)	619	NM_001122764	5498	Hs.517373	NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP	protoporphyrinogen oxidase	protein-coding
19.6257-6	chr6	136163567	136164066	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-9018	NM_018945	27115	Hs.744230	NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
0.0524306-5	chr3	156338020	156338519	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-53936	NM_015508	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
1.87755-3	chr7	107903859	107904358	+	0	NA	intron (NM_005010, intron 3 of 27)	intron (NM_005010, intron 3 of 27)	-23494	NM_001037132	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
3.15155-12	chr15	99193613	99194112	+	0	NA	non-coding (NR_126453, exon 1 of 1)	non-coding (NR_126453, exon 1 of 1)	588	NR_126453	104472848	Hs.349049	NR_126453		IRAIN	IGF1R-AS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
0.467237-11	chr19	4471728	4472227	+	0	NA	promoter-TSS (NM_001001520)	promoter-TSS (NM_001001520)	-216	NM_001001520	84717	Hs.43071	NM_032631	ENSG00000167674	HDGFRP2	HDGF-2|HDGF2|HRP-2	hepatoma-derived growth factor-related protein 2	protein-coding
2.38072-7	chr8	3964999	3965498	+	0	NA	intron (NM_033225, intron 3 of 69)	intron (NM_033225, intron 3 of 69)	887080	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
4.58421-8	chr2	224163406	224163905	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	247007	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
0.213631-19	chr2	45469546	45470045	+	0	NA	intron (NR_033831, intron 1 of 5)	intron (NR_033831, intron 1 of 5)	12285	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA
6.9897-20	chr1	207569230	207569729	+	0	NA	Intergenic	L2|LINE|L2	-58166	NM_001877	1380	Hs.445757	NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
1.82435-17	chr20	306742	307241	+	0	NA	exon (NM_006943, exon 1 of 1)	exon (NM_006943, exon 1 of 1)	776	NM_006943	6666	Hs.43627	NM_006943	ENSG00000177732	SOX12	SOX22	SRY-box 12	protein-coding
1.75874-5	chr16	81483204	81483703	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	4678	NM_198390	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
0.177288-15	chr12	129450792	129451291	+	0	NA	intron (NR_133646, intron 10 of 10)	intron (NR_133646, intron 10 of 10)	113062	NR_133646	144423	Hs.655668	NM_144669	ENSG00000151948	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding
22.5104-3	chr10	49836146	49836645	+	0	NA	intron (NR_045675, intron 2 of 10)	MIRb|SINE|MIR	-23219	NM_001256024	58504	Hs.655672	NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
3.28827-11	chr1	153540248	153540747	+	0	NA	Intergenic	Intergenic	-2191	NM_005978	6273	Hs.516484	NM_005978	ENSG00000196754	S100A2	CAN19|S100L	S100 calcium binding protein A2	protein-coding
4.40093-2	chr11	47370361	47370860	+	0	NA	intron (NM_000256, intron 5 of 33)	MER91B|DNA|hAT-Tip100	3643	NM_000256	4607	Hs.524906	NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C	myosin binding protein C, cardiac	protein-coding
0.675262-2	chr1	110026134	110026633	+	0	NA	promoter-TSS (NM_153340)	promoter-TSS (NM_153340)	-178	NM_153340	127002	Hs.118248	NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
3.22393-26	chr7	102234029	102234528	+	0	NA	exon (NM_006989, exon 14 of 21)	exon (NM_006989, exon 14 of 21)	-21210	NM_001097615	548644	Hs.610255	NM_001015884	ENSG00000168255	POLR2J3	POLR2J2|RPB11b1|RPB11b2	RNA polymerase II subunit J3	protein-coding
2.99296-17	chr2	216946296	216946795	+	0	NA	promoter-TSS (NM_001142310)	promoter-TSS (NM_001142310)	-6	NM_018441	55825	Hs.281680	NM_018441	ENSG00000115425	PECR	DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
41.6115	chr8	137499454	137499953	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	926128	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
1.14074-5	chr6	127927176	127927675	+	0	NA	Intergenic	Intergenic	29106	NM_001010905	352999	Hs.226268	NM_001010905	ENSG00000184530	C6orf58	LEG1	chromosome 6 open reading frame 58	protein-coding
1.50581-24	chr11	72524956	72525455	+	0	NA	promoter-TSS (NM_001318766)	promoter-TSS (NM_001318766)	-246	NM_033388	89849	Hs.653186	NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
13.5262	chr8	37376763	37377262	+	0	NA	intron (NR_121621, intron 1 of 2)	intron (NR_121621, intron 1 of 2)	1892	NR_121621	100507420	Hs.105962	NR_121620		LINC01605	-	long intergenic non-protein coding RNA 1605	ncRNA
5.76754	chr2	121887369	121887868	+	0	NA	Intergenic	Intergenic	155160	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
0.545314-17	chr16	3767329	3767828	+	0	NA	promoter-TSS (NM_016292)	promoter-TSS (NM_016292)	20	NM_016292	10131	Hs.30345	NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
0.245682-24	chr1	112868066	112868565	+	0	NA	Intergenic	Intergenic	-70485	NM_018704	55917	Hs.744100	NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
1.23205	chr3	10050591	10051090	+	0	NA	intron (NM_001008737, intron 2 of 3)	intron (NM_001008737, intron 2 of 3)	1939	NM_001008737	401052	Hs.662766	NM_001008737		LOC401052	-	uncharacterized LOC401052	protein-coding
0.649968-16	chr14	81683841	81684340	+	0	NA	intron (NM_201595, intron 1 of 8)	AluJb|SINE|Alu	3206	NM_015859	2957	Hs.592334	NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
1.97226-6	chr16	84096322	84096821	+	0	NA	intron (NM_003791, intron 19 of 22)	intron (NM_003791, intron 19 of 22)	-20809	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FVH2	solute carrier family 38 member 8	protein-coding
8.06875-6	chr2	190225327	190225826	+	0	NA	Intergenic	L1PA10|LINE|L1	-80583	NM_032168	84128	Hs.399984	NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
0.550241-4	chr11	102906566	102907065	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	56129	NM_032299	84259	Hs.503716	NM_032299	ENSG00000137692	DCUN1D5	SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
1.33122-12	chr6	124283646	124284145	+	0	NA	intron (NM_153355, intron 1 of 5)	LTR18A|LTR|ERVL	158904	NM_001300738	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
1.81115-5	chr11	17229713	17230212	+	0	NA	promoter-TSS (NM_001321378)	promoter-TSS (NM_001321378)	-419	NM_001321378	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
8.99629-5	chrX	13378238	13378737	+	0	NA	Intergenic	Intergenic	25127	NR_045260	100133123	Hs.449499	NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
11.1691	chr15	68868502	68869001	+	0	NA	intron (NM_001324014, intron 2 of 12)	intron (NM_001324014, intron 2 of 12)	-2557	NM_006091	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
0.204516-3	chrX	46655978	46656477	+	0	NA	Intergenic	Intergenic	-37620	NM_001257291	84679	Hs.91389	NM_032591	ENSG00000065923	SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9 member A7	protein-coding
4.54693-4	chr6	85484330	85484829	+	0	NA	Intergenic	CpG	-10625	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	CAKUT2	T-box 18	protein-coding
5.12862-12	chr11	102291926	102292425	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	-31475	NR_135053	101928424	Hs.647210	NR_135053	ENSG00000255337	LOC101928424	-	uncharacterized LOC101928424	ncRNA
38.8941-2	chr2	85316900	85317399	+	0	NA	Intergenic	Intergenic	-43434	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
1.35489-29	chr5	14125312	14125811	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-18250	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
0.315171-2	chr3	49577566	49578065	+	0	NA	Intergenic	Intergenic	13984	NR_038866	100132677	Hs.435651	NR_038866	ENSG00000226913	BSN-AS2	-	BSN antisense RNA 2 (head to head)	ncRNA
2.81498-6	chr12	133187157	133187656	+	0	NA	promoter-TSS (NM_001195520)	promoter-TSS (NM_001195520)	-369	NM_001195520	100507055	Hs.282811	NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
7.42321-2	chr11	130033295	130033794	+	0	NA	intron (NM_021978, intron 1 of 18)	intron (NM_021978, intron 1 of 18)	3862	NM_021978	6768	Hs.504315	NM_021978	ENSG00000149418	ST14	ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14	protein-coding
0.310503-29	chr11	125458008	125458507	+	0	NA	intron (NR_132372, intron 1 of 2)	AluJb|SINE|Alu	4206	NR_132372	105369550	Hs.732083	NR_132372	ENSG00000254671	STT3A-AS1	-	STT3A antisense RNA 1	ncRNA
17.0774-9	chr1	232929338	232929837	+	0	NA	Intergenic	Intergenic	-11051	NM_019090	54627	Hs.160373	NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding
1.01824-8	chrX	48326595	48327094	+	0	NA	intron (NM_033518, intron 2 of 16)	intron (NM_033518, intron 2 of 16)	1800	NM_033518	92745	Hs.195155	NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
0.0568285	chr3	42160187	42160686	+	0	NA	intron (NM_001042646, intron 1 of 15)	intron (NM_001042646, intron 1 of 15)	27690	NM_001042646	22906	Hs.535711	NM_014965	ENSG00000182606	TRAK1	MILT1|OIP106	trafficking kinesin protein 1	protein-coding
16.8403	chr7	121471825	121472324	+	0	NA	Intergenic	Intergenic	-41085	NM_001206838	5803	Hs.489824	NM_002851	ENSG00000106278	PTPRZ1	HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan	protein tyrosine phosphatase, receptor type Z1	protein-coding
3.5164-7	chr9	101866952	101867451	+	0	NA	promoter-TSS (NM_004612)	promoter-TSS (NM_004612)	-170	NM_001130916	7046	Hs.494622	NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
19.5468-2	chr4	27715658	27716157	+	0	NA	Intergenic	L1MB3|LINE|L1	496806	NR_125921	101929199	Hs.570815	NR_125921	ENSG00000249699	LOC101929199	-	uncharacterized LOC101929199	ncRNA
4.77556-3	chr13	45914466	45914965	+	0	NA	promoter-TSS (NR_024458)	promoter-TSS (NR_024458)	704	NM_001286273	7178	Hs.374596	NM_003295	ENSG00000133112	TPT1	HRF|TCTP|p02|p23	tumor protein, translationally-controlled 1	protein-coding
0.172766-4	chr4	89744612	89745111	+	0	NA	promoter-TSS (NM_001265580)	promoter-TSS (NM_001265580)	-349	NM_001265579	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
0.798767-30	chr3	33686610	33687109	+	0	NA	intron (NM_015097, intron 7 of 38)	intron (NM_015097, intron 7 of 38)	14074	NM_001207044	23122	Hs.108614	NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
0.141246-30	chr7	34098576	34099075	+	0	NA	intron (NM_133468, intron 11 of 15)	intron (NM_133468, intron 11 of 15)	154302	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
2.44125-4	chr6	166263482	166263981	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-137308	NR_027284	441177	Hs.708964	NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
15.1999-3	chr16	73033914	73034413	+	0	NA	intron (NM_006885, intron 1 of 9)	intron (NM_006885, intron 1 of 9)	48111	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
1.4752	chr7	131198123	131198622	+	0	NA	intron (NM_001018111, intron 1 of 8)	intron (NM_001018111, intron 1 of 8)	43004	NM_001018111	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
0.809219-8	chr20	14396174	14396673	+	0	NA	intron (NM_080676, intron 3 of 16)	intron (NM_080676, intron 3 of 16)	-78110	NM_013281	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
3.71611-4	chr6	63775938	63776437	+	0	NA	Intergenic	Intergenic	253695	NM_001143940	51557	Hs.149585	NM_016571	ENSG00000146166	LGSN	GLULD1|LGS	lengsin, lens protein with glutamine synthetase domain	protein-coding
3.9794-7	chr9	33667870	33668369	+	0	NA	Intergenic	SVA_C|Other|Other	-9147	NR_103745	101243555	Hs.598470	NR_103745	ENSG00000281128	PTENP1-AS	PTENP1as|PTENpg1-asRNA	PTENP1 antisense RNA	ncRNA
10.716-2	chr6	50903957	50904456	+	0	NA	Intergenic	Intergenic	117767	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
12.161	chr1	61508999	61509498	+	0	NA	Intergenic	CpG	-33698	NM_001145511	4774	Hs.740757	NM_005595	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
2.71646-2	chr2	31352694	31353193	+	0	NA	promoter-TSS (NM_001253827)	promoter-TSS (NM_001253827)	-437	NM_001253827	79623	Hs.468058	NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
1.34896-12	chr1	201054986	201055485	+	0	NA	intron (NM_000069, intron 7 of 43)	intron (NM_000069, intron 7 of 43)	26459	NM_000069	779	Hs.1294	NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
0.347983-7	chrX	154322680	154323179	+	0	NA	intron (NM_001242640, intron 7 of 10)	L1MD2|LINE|L1	23234	NM_001018055	79184	Hs.558537	NM_024332	ENSG00000185515	BRCC3	BRCC36|C6.1A|CXorf53	BRCA1/BRCA2-containing complex subunit 3	protein-coding
0.177288-19	chr5	36507362	36507861	+	0	NA	Intergenic	Intergenic	-98846	NM_001289939	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
0.545314-2	chr9	17839672	17840171	+	0	NA	Intergenic	Intergenic	260969	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
0.268721-51	chr7	111495237	111495736	+	0	NA	intron (NM_014705, intron 23 of 51)	L2a|LINE|L2	46925	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
1.97911-4	chr19	39339874	39340373	+	0	NA	intron (NM_001005335, intron 1 of 12)	CpG	494	NM_001533	3191	Hs.644906	NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
0.301184-29	chr7	149746251	149746750	+	0	NA	Intergenic	Intergenic	-175549	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
6.47817-2	chr8	97340038	97340537	+	0	NA	intron (NM_001290225, intron 8 of 10)	intron (NM_001290225, intron 8 of 10)	58589	NR_125829	102724804	Hs.571415	NR_125828	ENSG00000253105	LOC102724804	-	uncharacterized LOC102724804	ncRNA
1.22053-11	chr14	105936974	105937473	+	0	NA	TTS (NM_001203258)	TTS (NM_001203258)	-2052	NR_073082	1397	Hs.534309	NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
15.544	chr13	74719315	74719814	+	0	NA	Intergenic	Intergenic	-11498	NM_007249	11278	Hs.373857	NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	Kruppel like factor 12	protein-coding
28.1816-2	chr2	174580126	174580625	+	0	NA	Intergenic	Intergenic	248572	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
2.48721-16	chr1	234735434	234736293	+	0	NA	Intergenic	CpG	9408	NM_182972	359948	Hs.350268	NM_182972	ENSG00000168264	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding
1.61151-2	chr10	5653753	5654252	+	0	NA	Intergenic	Intergenic	-15921	NR_134491	105376382	Hs.460282	NR_134491	ENSG00000242147	LOC105376382	-	uncharacterized LOC105376382	ncRNA
2.24754-8	chr2	231917200	231917699	+	0	NA	Intergenic	CpG	-4129	NR_034059	5707	Hs.3887	NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
0.856568-25	chr15	84115948	84116447	+	0	NA	non-coding (NR_136714, exon 1 of 10)	non-coding (NR_136714, exon 1 of 10)	217	NM_001301109	6457	Hs.270055	NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
4.46117-10	chr11	63298203	63298702	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5821	NM_004585	5920	Hs.17466	NM_004585	ENSG00000133321	RARRES3	HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3	retinoic acid receptor responder 3	protein-coding
0.856568-20	chr14	89633477	89633976	+	0	NA	intron (NM_001085471, intron 6 of 6)	intron (NM_001085471, intron 6 of 6)	249728	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
0.570004-11	chr20	43367436	43367935	+	0	NA	intron (NR_132377, intron 1 of 4)	MLT1J2|LTR|ERVL-MaLR	-6803	NM_022358	60598	Hs.528664	NM_022358	ENSG00000124249	KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	potassium two pore domain channel subfamily K member 15	protein-coding
17.122-10	chr20	48744538	48745037	+	0	NA	intron (NR_027889, intron 5 of 6)	intron (NR_027889, intron 5 of 6)	-12291	NM_001257393	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
2.52588-8	chr8	103794682	103795181	+	0	NA	Intergenic	Intergenic	81497	NM_001301668	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	AZI|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
0.639892-13	chr8	85247880	85248379	+	0	NA	intron (NM_001100391, intron 1 of 8)	intron (NM_001100391, intron 1 of 8)	151029	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
14.3771-9	chr6	122101336	122101835	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	344862	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
2.61219	chr8	102516454	102516953	+	0	NA	intron (NM_001330593, intron 1 of 15)	intron (NM_001330593, intron 1 of 15)	12035	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding
0.0436481-31	chr3	53164078	53164577	+	0	NA	intron (NM_052859, intron 1 of 12)	CpG	143	NM_052859	91869	Hs.631910	NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
5.80044-9	chr6	3849147	3849646	+	0	NA	promoter-TSS (NM_012135)	promoter-TSS (NM_012135)	-204	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
0.273344-23	chr6	88410657	88411156	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	1079	NM_018064	55122	Hs.485915	NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
0.409586-22	chr5	2797230	2797729	+	0	NA	Intergenic	Intergenic	45234	NM_001294337	153571	Hs.148486	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
0.0921731-42	chr16	81005652	81006151	+	0	NA	Intergenic	Intergenic	-34202	NM_001270473	55839	Hs.726537	NM_018455	ENSG00000166451	CENPN	BM039|C16orf60|CENP-N|ICEN32	centromere protein N	protein-coding
0.91515-12	chr3	177076610	177077109	+	0	NA	Intergenic	MIRb|SINE|MIR	64629	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
1.29011-21	chr1	188720855	188721354	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	1308344	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
1.26679-7	chr11	46606400	46606899	+	0	NA	intron (NM_001300731, intron 1 of 16)	SVA_D|Other|Other	6265	NM_017749	55626	Hs.654644	NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
0.695604	chr8	29877169	29877668	+	0	NA	Intergenic	Intergenic	-62554	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
2.13249-13	chr11	15736433	15736932	+	0	NA	Intergenic	Intergenic	71251	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
3.12471-14	chr19	38210092	38210591	+	0	NA	promoter-TSS (NM_001172677)	promoter-TSS (NM_001172677)	-252	NM_001172677	84775	Hs.116622	NM_032689	ENSG00000198182	ZNF607	-	zinc finger protein 607	protein-coding
13.4582	chrX	10843332	10843831	+	0	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	8228	NM_033290	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
4.86782-9	chrX	47930985	47931484	+	0	NA	promoter-TSS (NM_001282202)	promoter-TSS (NM_001282202)	-209	NM_001282201	57232	Hs.650883	NM_001037735	ENSG00000221994	ZNF630	dJ54B20.2	zinc finger protein 630	protein-coding
0.649968-19	chr2	43452823	43453322	+	0	NA	intron (NM_006887, intron 1 of 1)	CpG	673	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
5.05845	chr4	57301516	57302015	+	0	NA	promoter-TSS (NM_001079524)	promoter-TSS (NM_001079524)	37	NM_002703	5471	Hs.331420	NM_002703	ENSG00000128059	PPAT	ATASE|GPAT|PRAT	phosphoribosyl pyrophosphate amidotransferase	protein-coding
11.3136	chr1	231654311	231654810	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-9839	NR_028398	100303453	Hs.13318	NR_028393	ENSG00000270106	TSNAX-DISC1	-	TSNAX-DISC1 readthrough (NMD candidate)	ncRNA
11.9791-3	chr17	40670434	40670933	+	0	NA	intron (NM_001130020, intron 20 of 20)	intron (NM_001130020, intron 20 of 20)	4477	NR_049808	100847046		NR_049808	ENSG00000033627	MIR5010	mir-5010	microRNA 5010	ncRNA
0.0833099-8	chr13	92021021	92021520	+	0	NA	Intergenic	LTR41|LTR|ERVL	17702	NR_029508	407048	Hs.24115	NR_029508	ENSG00000215417	MIR92A1	MIR92-1|MIRN92-1|MIRN92A-1|MIRN92A1|miRNA92-1|mir-92a-1	microRNA 92a-1	ncRNA
1.55523-7	chr18	49194420	49194919	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	276257	NR_040075	100287225	Hs.448920	NR_040074	ENSG00000227115	LINC01630	-	long intergenic non-protein coding RNA 1630	ncRNA
0.414361-34	chr6	158294634	158295133	+	0	NA	intron (NM_016224, intron 3 of 17)	intron (NM_016224, intron 3 of 17)	50680	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
0.296531-85	chr10	134536397	134536896	+	0	NA	intron (NM_005539, intron 8 of 15)	intron (NM_005539, intron 8 of 15)	41867	NM_001321042	3632	Hs.523360	NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
18.3863-10	chr16	84029014	84029513	+	0	NA	intron (NM_001329748, intron 8 of 11)	intron (NM_001329748, intron 8 of 11)	27026	NM_019065	54550	Hs.140950	NM_019065	ENSG00000103154	NECAB2	EFCBP2|stip-2	N-terminal EF-hand calcium binding protein 2	protein-coding
2.26214-19	chr3	98452484	98452983	+	0	NA	intron (NM_001323366, intron 1 of 11)	intron (NM_001323366, intron 1 of 11)	433	NM_001323365	10402	Hs.148716	NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
6.05548-7	chr16	74334104	74334603	+	0	NA	intron (NM_002811, intron 2 of 6)	MER58A|DNA|hAT-Charlie	3680	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	proteasome 26S subunit, non-ATPase 7	protein-coding
0.545314	chr2	200715584	200716083	+	0	NA	promoter-TSS (NR_034096)	promoter-TSS (NR_034096)	63	NR_034096	348751	Hs.734578	NR_034096	ENSG00000226124	FTCDNL1	FONG	formiminotransferase cyclodeaminase N-terminal like	ncRNA
9.95679-2	chr5	151712358	151712857	+	0	NA	Intergenic	Intergenic	72233	NM_020167	56923	Hs.731911	NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
2.32844-9	chr2	110551642	110552141	+	0	NA	promoter-TSS (NM_005054)	promoter-TSS (NM_005054)	-75	NM_005054	84220	Hs.469630	NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
0.520764-8	chr12	104851498	104851997	+	0	NA	intron (NM_018413, intron 1 of 2)	CpG	1055	NM_001173982	50515	Hs.17569	NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537	carbohydrate sulfotransferase 11	protein-coding
5.17126-10	chr19	53141283	53141782	+	0	NA	intron (NM_001348016, intron 1 of 3)	CpG	112	NM_001277952	55769	Hs.467210	NM_018300	ENSG00000167766	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
17.122-3	chr6	86838582	86839081	+	0	NA	Intergenic	L1PB1|LINE|L1	-450380	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5	ncRNA
1.23782-5	chr21	37513675	37514174	+	0	NA	non-coding (NR_038894, exon 3 of 3)	non-coding (NR_038894, exon 3 of 3)	6661	NM_001236	874	Hs.154510	NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
1.6813-9	chr5	1141900	1142399	+	0	NA	Intergenic	Intergenic	-29977	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
2.41845	chr1	15631108	15631607	+	0	NA	intron (NM_052929, intron 6 of 30)	MamRep564|Unknown|Unknown	57589	NM_052929	114827	Hs.659997	NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
1.61151-7	chr13	34731066	34731565	+	0	NA	Intergenic	Intergenic	339109	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
2.82329-3	chr17	73056003	73056502	+	0	NA	intron (NR_110834, intron 5 of 6)	intron (NR_110834, intron 5 of 6)	12973	NR_110834	23510	Hs.514468	NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
0.231917-45	chr6	153824999	153825498	+	0	NA	Intergenic	Intergenic	83636	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
1.64309-5	chrX	152957698	152958197	+	0	NA	intron (NM_001142806, intron 4 of 12)	intron (NM_001142806, intron 4 of 12)	2981	NM_001142806	6535	Hs.540696	NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
1.63676-5	chr9	130341654	130342153	+	0	NA	promoter-TSS (NM_001035534)	promoter-TSS (NM_001035534)	-617	NM_001035534	64855	Hs.522401	NM_022833	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129 member B	protein-coding
1.86419-12	chr6	6661352	6661851	+	0	NA	Intergenic	Intergenic	-38542	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
9.50782-20	chrUn_gl000220	100847	101346	+	0	NA	intron (NR_038958, intron 2 of 6)	L1PREC2|LINE|L1	-3636	NR_128716	103504739		NR_128716	ENSG00000277379	MIR6724-3	hsa-mir-6724-3	microRNA 6724-3	ncRNA
0.141246-12	chr9	116420170	116420669	+	0	NA	Intergenic	Intergenic	63985	NM_001276262	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
0.227338-2	chr17	74178169	74178668	+	0	NA	intron (NM_001330501, intron 2 of 17)	intron (NM_001330501, intron 2 of 17)	-41038	NM_001454	2302	Hs.651204	NM_001454	ENSG00000129654	FOXJ1	FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
4.22508-7	chr1	180200121	180200620	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-1965	937	NM_033343	89884	Hs.658487	NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
2.04815-15	chr17	47785389	47785888	+	0	NA	promoter-TSS (NM_001278784)	promoter-TSS (NM_001278784)	-325	NM_005827	10237	Hs.154073	NM_005827	ENSG00000121073	SLC35B1	UGTREL1	solute carrier family 35 member B1	protein-coding
0.428718-26	chr9	95478656	95479155	+	0	NA	intron (NM_015250, intron 6 of 7)	intron (NM_015250, intron 6 of 7)	-46358	NM_022755	64768	Hs.459896	NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
1.93142-10	chr13	20692464	20693345	+	0	NA	Intergenic	Intergenic	16064	NR_126380	104355137	Hs.578016	NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
10.6198	chr3	192624451	192624950	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	11250	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
11.5677-2	chr11	47489693	47490192	+	0	NA	3' UTR (NM_001172640, exon 13 of 13)	3' UTR (NM_001172640, exon 13 of 13)	-19212	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
9.1364-13	chr10	80939294	80939793	+	0	NA	intron (NM_020338, intron 4 of 24)	intron (NM_020338, intron 4 of 24)	110751	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger MIZ-type containing 1	protein-coding
0.0833099-13	chr12	104235697	104236196	+	0	NA	promoter-TSS (NM_001031701)	promoter-TSS (NM_001031701)	-971	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
32.7901	chr18	47088068	47088567	+	0	NA	promoter-TSS (NM_001308006)	promoter-TSS (NM_001308006)	-84	NM_001308006	9388	Hs.465102	NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
26.1439	chr1	53106568	53107067	+	0	NA	intron (NR_135156, intron 2 of 5)	MER21C|LTR|ERVL	7801	NR_135157	348378	Hs.424589	NM_001042693	ENSG00000182183	FAM159A	PRO7171|WWLS2783	family with sequence similarity 159 member A	protein-coding
1.53663-12	chr20	44600410	44600909	+	0	NA	intron (NM_022095, intron 1 of 27)	CpG-16708	174	NM_022095	63925	Hs.174193	NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
7.47147-2	chr4	155473215	155473714	+	0	NA	Intergenic	Intergenic	-1879	NM_002669	5356	Hs.249996	NM_002669	ENSG00000171566	PLRG1	Cwc1|PRL1|PRP46|PRPF46|TANGO4	pleiotropic regulator 1	protein-coding
0.241089-40	chr4	74123634	74124133	+	0	NA	intron (NM_198889, intron 1 of 32)	intron (NM_198889, intron 1 of 32)	632	NM_015574	26057	Hs.601206	NM_015574	ENSG00000132466	ANKRD17	GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
1.19186-7	chr5	167696250	167696749	+	0	NA	Intergenic	Intergenic	-22566	NM_001161661	23286	Hs.484047	NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
1.43271-10	chr10	101294860	101295359	+	0	NA	exon (NM_145285, exon 2 of 2)	exon (NM_145285, exon 2 of 2)	2419	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
0.209071-20	chrX	71224003	71224502	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	-40007	NR_002309	441502	Hs.449523	NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
1.88425-14	chr22	35711813	35712312	+	0	NA	intron (NR_024194, intron 1 of 14)	intron (NR_024194, intron 1 of 14)	16265	NM_001135732	10043	Hs.474705	NM_005488	ENSG00000100284	TOM1	-	target of myb1 membrane trafficking protein	protein-coding
26.6354-3	chrX	10201177	10201676	+	0	NA	intron (NM_001830, intron 12 of 12)	MLT1J2|LTR|ERVL-MaLR	76441	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
2.48721-2	chr16	85574721	85575220	+	0	NA	Intergenic	Intergenic	-70059	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
2.24026-19	chr6	97945528	97946027	+	0	NA	intron (NR_110757, intron 1 of 4)	intron (NR_110757, intron 1 of 4)	-83494	NR_031679	100302287		NR_031679	ENSG00000221698	MIR548H3	MIR548H-3|MIRN548H3|hsa-mir-548h-3	microRNA 548h-3	ncRNA
6.9037	chr4	11252665	11253164	+	0	NA	Intergenic	Intergenic	-117537	NR_030298	693157		NR_030298	ENSG00000207716	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
0.457575-5	chr1	67773226	67773725	+	0	NA	non-coding (NR_047584, exon 1 of 17)	non-coding (NR_047584, exon 1 of 17)	428	NR_047583	3595	Hs.479347	NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
0.452752-17	chr22	47080527	47081026	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	53376	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
0.213631-13	chr15	69686834	69687333	+	0	NA	intron (NM_001104554, intron 6 of 8)	intron (NM_001104554, intron 6 of 8)	-19502	NM_138555	9493	Hs.270845	NM_004856	ENSG00000137807	KIF23	CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
2.81498-14	chr1	161947753	161948252	+	0	NA	Intergenic	LTR1B|LTR|ERV1	46253	NM_001297713	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
3.43902-19	chr2	225977791	225978290	+	0	NA	Intergenic	Intergenic	-70710	NM_014689	55619	Hs.46578	NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
4.44906-10	chr7	78398078	78398577	+	0	NA	intron (NM_001301128, intron 2 of 20)	intron (NM_001301128, intron 2 of 20)	-239977	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
1.16339-8	chr8	30769639	30770138	+	0	NA	Intergenic	CpG	-63355	NM_031271	56154	Hs.458316	NM_031271	ENSG00000133863	TEX15	CT42	testis expressed 15, meiosis and synapsis associated	protein-coding
9.35542-8	chr12	57421514	57422013	+	0	NA	TTS (NM_001256041)	TTS (NM_001256041)	-11419	NM_001178054	6866	Hs.9730	NM_013251	ENSG00000166863	TAC3	HH10|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin 3	protein-coding
22.1753-2	chr6	3628227	3628726	+	0	NA	Intergenic	Intergenic	123770	NM_183373	221749	Hs.484500	NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
5.14279-3	chr6	113476240	113476739	+	0	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	494788	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA
15.6543	chr12	90654986	90655485	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-31860	NR_135018	105369893	Hs.577777	NR_135018		LOC105369893	-	uncharacterized LOC105369893	ncRNA
2.06908-2	chr9	76813106	76813605	+	0	NA	Intergenic	SVA_D|Other|Other	-173092	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
5.96879-13	chr6	5206047	5206546	+	0	NA	intron (NM_001164840, intron 2 of 2)	intron (NM_001164840, intron 2 of 2)	54887	NM_001164841	57128	Hs.387755	NM_020408	ENSG00000214113	LYRM4	C6orf149|CGI-203|COXPD19|ISD11	LYR motif containing 4	protein-coding
0.32452-25	chr22	25815282	25815781	+	0	NA	Intergenic	Intergenic	-28523	NR_033733	1416	Hs.571835	NR_033733	ENSG00000100058	CRYBB2P1	CRYB2B	crystallin beta B2 pseudogene 1	pseudo
4.89455	chr6	84937222	84937721	+	0	NA	promoter-TSS (NM_001286206)	promoter-TSS (NM_001286206)	-118	NM_001286206	22832	Hs.485865	NM_014895	ENSG00000135315	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162	protein-coding
2.83162-7	chr5	177580719	177581218	+	0	NA	promoter-TSS (NM_001034833)	promoter-TSS (NM_001034833)	-7	NM_001034833	55651	Hs.744074	NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
2.19683-5	chr4	20356201	20356700	+	0	NA	intron (NM_001289136, intron 4 of 35)	intron (NM_001289136, intron 4 of 35)	-37362	NR_037876	100505893	Hs.665305	NR_037876	ENSG00000248228	SLIT2-IT1	-	SLIT2 intronic transcript 1	ncRNA
2.26945	chr22	23453103	23453602	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	30889	NM_014433	27156	Hs.526920	NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
12.8904	chr14	81002849	81003348	+	0	NA	intron (NM_152446, intron 20 of 23)	intron (NM_152446, intron 20 of 23)	-305701	NM_000793	1734	Hs.202354	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding
0.070049-74	chr7	5936842	5937341	+	0	NA	Intergenic	MER51E|LTR|ERV1	-1250	NM_015622	51622	Hs.530000	NM_015622	ENSG00000122674	CCZ1	C7orf28A|CCZ1A|CGI-43|H_DJ1163J12.2	CCZ1 homolog, vacuolar protein trafficking and biogenesis associated	protein-coding
0.376307-14	chr13	88322758	88323257	+	0	NA	intron (NR_033829, intron 1 of 5)	intron (NR_033829, intron 1 of 5)	211	NR_033829	642345	Hs.508337	NR_033829	ENSG00000228824	MIR4500HG	-	MIR4500 host gene	ncRNA
4.43697-3	chr19	52924668	52925167	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-9750	NM_001143938	147658	Hs.447583	NM_182512	ENSG00000198633	ZNF534	KRBO3	zinc finger protein 534	protein-coding
5.40608	chr5	37717561	37718060	+	0	NA	intron (NM_001345998, intron 13 of 17)	intron (NM_001345998, intron 13 of 17)	117114	NM_001278098	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
32.5493-2	chr3	120225328	120225827	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-55659	NM_007085	11167	Hs.269512	NM_007085	ENSG00000163430	FSTL1	FRP|FSL1|MIR198|OCC-1|OCC1|tsc36	follistatin like 1	protein-coding
2.9243	chr1	226850465	226850964	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	12055	NR_103784	100506443	Hs.664293	NR_103784		ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
3.55561-5	chr3	191439674	191440173	+	0	NA	Intergenic	MER68|LTR|ERVL	260971	NM_001083308	152138	Hs.690618	NM_001083308		PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
1.12946-13	chr7	68205705	68206204	+	0	NA	Intergenic	L1PA11|LINE|L1	720714	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
0.798767-23	chr2	86946372	86946871	+	0	NA	promoter-TSS (NM_022780)	promoter-TSS (NM_022780)	-793	NM_022780	64795	Hs.75277	NM_022780	ENSG00000153561	RMND5A	CTLH|GID2|GID2A|RMD5|p44CTLH	required for meiotic nuclear division 5 homolog A	protein-coding
11.831-2	chr1	151103654	151104153	+	0	NA	TTS (NM_001178062)	TTS (NM_001178062)	15237	NM_030913	10500	Hs.516316	NM_030913	ENSG00000143434	SEMA6C	SEMAY|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
0.371573-3	chr11	64014606	64015105	+	0	NA	promoter-TSS (NM_138689)	promoter-TSS (NM_138689)	329	NR_135086	105369340	Hs.697228	NR_135086	ENSG00000256940	LOC105369340	-	uncharacterized LOC105369340	ncRNA
0.472076-5	chr4	41646156	41646655	+	0	NA	intron (NM_001330983, intron 4 of 21)	CpG	31486	NM_001330983	22998	Hs.335163	NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4.28291-12	chr22	30115065	30115564	+	0	NA	Intergenic	Intergenic	-1030	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
11.1351-6	chr15	85732902	85733401	+	0	NA	Intergenic	Intergenic	15367	NR_049748	642423	Hs.681665	NR_049748		LOC642423	-	golgin A2 pseudogene	pseudo
0.496351-49	chr14	99881934	99882433	+	0	NA	intron (NM_199123, intron 6 of 8)	intron (NM_199123, intron 6 of 8)	65043	NM_032233	84193	Hs.510407	NM_032233	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
18.1816-2	chr4	146637290	146637789	+	0	NA	intron (NM_001080531, intron 2 of 5)	MLT1J2|LTR|ERVL-MaLR	36183	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
0.145735-16	chr6	122942688	122943187	+	0	NA	intron (NM_181795, intron 1 of 4)	intron (NM_181795, intron 1 of 4)	11560	NM_181795	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
0.0130484-60	chr8	117705797	117706296	+	0	NA	intron (NM_003756, intron 2 of 7)	AluJr|SINE|Alu	41707	NR_136278	105375713		NR_136278		LOC105375713	-	uncharacterized LOC105375713	ncRNA
13.9794-2	chr6	111989430	111989929	+	0	NA	intron (NM_002037, intron 13 of 13)	intron (NM_002037, intron 13 of 13)	51586	NM_153047	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
3.8405-2	chr9	83107093	83107592	+	0	NA	Intergenic	Intergenic	517404	NR_121212	101927477	Hs.571630	NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
2.32844-5	chr19	18700063	18700562	+	0	NA	exon (NM_001100418, exon 3 of 5)	exon (NM_001100418, exon 3 of 5)	817	NM_001100419	55049	Hs.655317	NM_017967	ENSG00000006015	C19orf60	-	chromosome 19 open reading frame 60	protein-coding
16.1798	chr13	73747503	73748002	+	0	NA	Intergenic	Intergenic	114822	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
10.9745-3	chr13	27293602	27294101	+	0	NA	Intergenic	Intergenic	41071	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
7.64472-15	chr10	82167973	82168472	+	0	NA	promoter-TSS (NM_001243781)	promoter-TSS (NM_001243781)	-20	NM_001243780	84293	Hs.500333	NM_032333	ENSG00000122378	FAM213A	C10orf58|PAMM	family with sequence similarity 213 member A	protein-coding
5.85027-12	chr13	77047602	77048101	+	0	NA	Intergenic	Intergenic	412689	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
1.26679-11	chr5	150827000	150827499	+	0	NA	promoter-TSS (NM_001308150)	promoter-TSS (NM_001308150)	92	NM_001308150	206358	Hs.269004	NM_078483	ENSG00000123643	SLC36A1	Dct1|LYAAT1|PAT1|TRAMD3	solute carrier family 36 member 1	protein-coding
2.99296-23	chr16	28790907	28791406	+	0	NA	Intergenic	SVA_D|Other|Other	27400	NM_001287250	100507607	Hs.710214	NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
1.08463-2	chr17	75136489	75136988	+	0	NA	promoter-TSS (NM_003003)	promoter-TSS (NM_003003)	-267	NM_001039573	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
13.7986-10	chr7	45255226	45255725	+	0	NA	Intergenic	Intergenic	58108	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
6.92504-18	chr22	43145943	43146442	+	0	NA	Intergenic	SVA_D|Other|Other	-28885	NM_001318038	53947	Hs.105956	NM_017436	ENSG00000128274	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase	protein-coding
25.5752-6	chr18	45457607	45458106	+	0	NA	promoter-TSS (NM_005901)	promoter-TSS (NM_005901)	-339	NM_001003652	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
0.9691-13	chr11	63685209	63686161	+	0	NA	Intergenic	CpG	-1369	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
1.22629-9	chr2	121833792	121834291	+	0	NA	Intergenic	Intergenic	208737	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
2.38072	chr14	102771053	102771552	+	0	NA	exon (NM_001272011, exon 1 of 11)	exon (NM_001272011, exon 1 of 11)	235	NM_001272011	5891	Hs.104119	NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
0.963675-10	chr7	28145781	28146280	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-74046	NR_034097	100128081	Hs.434307	NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
30.0349-3	chr5	102904877	102905376	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-6624	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding
9.39302-4	chr1	9653761	9654260	+	0	NA	intron (NM_001010866, intron 1 of 5)	intron (NM_001010866, intron 1 of 5)	5078	NM_001130924	199953	Hs.632365	NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
1.2436	chr3	186857027	186857526	+	0	NA	promoter-TSS (NM_052969)	promoter-TSS (NM_052969)	-13	NM_052969	116832	Hs.647900	NM_052969	ENSG00000163923	RPL39L	RPL39L1	ribosomal protein L39 like	protein-coding
1.83096-2	chr11	88796013	88796512	+	0	NA	intron (NM_000842, intron 1 of 8)	intron (NM_000842, intron 1 of 8)	584	NM_000842	2915	Hs.147361	NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
0.070049-49	chr12	54552851	54553350	+	0	NA	Intergenic	Intergenic	29641	NM_001243789	23583	Hs.632721	NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
4.55932-12	chr16	1524766	1525265	+	0	NA	promoter-TSS (NM_001287)	promoter-TSS (NM_001287)	70	NM_001114331	1186	Hs.459649	NM_001287	ENSG00000103249	CLCN7	CLC-7|CLC7|OPTA2|OPTB4|PPP1R63	chloride voltage-gated channel 7	protein-coding
2.22573-11	chr13	102691415	102691914	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	6690	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA
0.109954	chr5	37839254	37839753	+	0	NA	intron (NM_000514, intron 1 of 2)	CpG	279	NM_000514	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
0.199966-13	chr7	22235353	22235852	+	0	NA	intron (NM_012294, intron 9 of 25)	intron (NM_012294, intron 9 of 25)	160931	NM_012294	9771	Hs.174768	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
0.94744-16	chrX	1510451	1510950	+	0	NA	intron (NM_001636, intron 1 of 3)	CpG	339	NM_001636	293	Hs.350927	NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
7.12198-6	chr4	68411031	68411530	+	0	NA	promoter-TSS (NM_001812)	promoter-TSS (NM_001812)	-24	NM_001812	1060	Hs.479867	NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
3.55561	chr16	85675456	85675955	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	28863	NM_001278184	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
2.652-7	chr2	217471176	217471675	+	0	NA	intron (NR_110392, intron 1 of 3)	intron (NR_110392, intron 1 of 3)	236	NR_110392	101928232	Hs.694592	NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
3.05395-12	chr12	57888254	57888753	+	0	NA	intron (NM_004990, intron 7 of 20)	SVA_B|Other|Other	-5906	NM_001319850	64333	Hs.437126	NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
1.72631-15	chr6	131029457	131029956	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-118839	NM_001195597	100507203	Hs.388715	NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
1.18045-17	chr19	45619065	45619564	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	22883	NM_019121	284352	Hs.285363	NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
1.82435-25	chr1	228132917	228133416	+	0	NA	intron (NM_003395, intron 1 of 3)	intron (NM_003395, intron 1 of 3)	2510	NM_003395	7483	Hs.149504	NM_003395	ENSG00000143816	WNT9A	WNT14	Wnt family member 9A	protein-coding
1.29011-7	chr14	60385837	60386336	+	0	NA	promoter-TSS (NR_075071)	promoter-TSS (NR_075071)	-345	NR_075071	341883	Hs.666245	NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	pseudo
0.109954-22	chr20	32237129	32237628	+	0	NA	3' UTR (NM_005093, exon 12 of 12)	3' UTR (NM_005093, exon 12 of 12)	-12714	NM_080825	128864	Hs.324104	NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
1.49967-17	chr2	59528863	59529362	+	0	NA	Intergenic	Intergenic	84269	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
1.75874-17	chr8	59584734	59585233	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-12579	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
0.883098-2	chr7	142491021	142491520	+	0	NA	Intergenic	Intergenic	12513	NR_001296	154754	Hs.449281	NR_001296		PRSS3P2	T6|TRY6	protease, serine 3 pseudogene 2	pseudo
0.070049-73	chr3	129312618	129313117	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	12715	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
3.50665-10	chr4	109087604	109088103	+	0	NA	promoter-TSS (NM_001166119)	promoter-TSS (NM_001166119)	100	NM_001166119	51176	Hs.743478	NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
0.69051-2	chr5	92956546	92957045	+	0	NA	promoter-TSS (NR_031754)	promoter-TSS (NR_031754)	-301	NR_031754	100313887		NR_031754	ENSG00000113391	MIR2277	mir-2277	microRNA 2277	ncRNA
1.79799-29	chr1	2379343	2379842	+	0	NA	Intergenic	Intergenic	-19306	NM_001303012	9651	Hs.170156	NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
0.0217692-15	chr12	21401886	21402385	+	0	NA	Intergenic	L4|LINE|RTE	85697	NM_021094	6579	Hs.46440	NM_005075	ENSG00000084453	SLCO1A2	OATP|OATP-A|OATP1A2|SLC21A3	solute carrier organic anion transporter family member 1A2	protein-coding
4.27128-16	chr5	43064806	43065305	+	0	NA	TTS (NR_034127)	TTS (NR_034127)	2018	NR_034127	100132356	Hs.726831	NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
15.986	chr4	10834842	10835341	+	0	NA	Intergenic	Intergenic	-148705	NM_052964	116449	Hs.678910	NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
0.47692-7	chr4	127820532	127821031	+	0	NA	Intergenic	Intergenic	-733306	NM_015693	27152	Hs.391481	NM_015693	ENSG00000164066	INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
4.57175-12	chr6	119450454	119450953	+	0	NA	intron (NM_001100411, intron 1 of 16)	intron (NM_001100411, intron 1 of 16)	19655	NM_001288576	79632	Hs.443789	NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
19.3554-3	chr3	187526537	187527036	+	0	NA	Intergenic	Intergenic	-63273	NM_001706	604	Hs.478588	NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	B-cell CLL/lymphoma 6	protein-coding
12.5885-3	chr1	226215539	226216038	+	0	NA	Intergenic	Intergenic	-28722	NM_152608	163859	Hs.520192	NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
11.8509	chr19	35225144	35225643	+	0	NA	promoter-TSS (NM_001029997)	promoter-TSS (NM_001029997)	-87	NM_001029997	339318	Hs.720472	NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
2.0204-8	chr15	30487048	30487547	+	0	NA	promoter-TSS (NR_026771)	promoter-TSS (NR_026771)	-942	NR_026771	26082	Hs.652128	NR_026771	ENSG00000225930	DKFZP434L187	-	uncharacterized LOC26082	ncRNA
0.814455-4	chr14	51560000	51560499	+	0	NA	intron (NM_052978, intron 1 of 6)	CpG	2173	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
0.376307-49	chr3	195620023	195620522	+	0	NA	promoter-TSS (NM_001308046)	promoter-TSS (NM_001308046)	-617	NM_001308046	10188	Hs.518513	NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
0.241089-3	chr7	152312384	152312883	+	0	NA	Intergenic	Intergenic	60617	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	FANCU	X-ray repair cross complementing 2	protein-coding
12.2988-2	chr9	132209315	132209814	+	0	NA	Intergenic	Intergenic	-41375	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
0.0130484-30	chr17	21251894	21252393	+	0	NA	Intergenic	Intergenic	-27556	NM_021012	3768	Hs.200629	NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium voltage-gated channel subfamily J member 12	protein-coding
0.535477-17	chr8	68263173	68263672	+	0	NA	intron (NR_136223, intron 2 of 2)	SVA_D|Other|Other	7353	NR_136223	102724708	Hs.636330	NR_136223		LOC102724708	-	uncharacterized LOC102724708	ncRNA
0.127808-8	chr3	184032104	184032603	+	0	NA	promoter-TSS (NM_198241)	promoter-TSS (NM_198241)	63	NM_001291157	1981	Hs.433750	NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
6.55608	chr15	83879301	83879800	+	0	NA	Intergenic	Intergenic	-2780	NM_016073	50810	Hs.513954	NM_016073	ENSG00000166503	HDGFRP3	CGI-142|HDGF-2|HDGF2|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding
0.867161-7	chr9	114737956	114738455	+	0	NA	Intergenic	Intergenic	43825	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
5.33132-10	chr3	164179611	164180110	+	0	NA	Intergenic	L1PA16|LINE|L1	-290516	NR_031665	100302148		NR_031665	ENSG00000221251	MIR1263	MIRN1263|hsa-mir-1263	microRNA 1263	ncRNA
9.62574-17	chr21	30733054	30733553	+	0	NA	intron (NR_027655, intron 6 of 7)	L2a|LINE|L2	-11518	NR_046564	100874322	Hs.326404	NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
10.4769-7	chr22	33040224	33040723	+	0	NA	intron (NM_001135774, intron 6 of 13)	intron (NM_001135774, intron 6 of 13)	-156329	NM_000362	7078	Hs.644633	NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
0.00869459-20	chr20	25175952	25176451	+	0	NA	promoter-TSS (NM_001322388)	promoter-TSS (NM_001322388)	-105	NM_001322392	955	Hs.500375	NM_001247	ENSG00000197586	ENTPD6	CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3	ectonucleoside triphosphate diphosphohydrolase 6 (putative)	protein-coding
1.05684-9	chr11	830724	831223	+	0	NA	exon (NM_001286606, exon 7 of 9)	exon (NM_001286606, exon 7 of 9)	-1979	NM_004357	977	Hs.654379	NM_004357	ENSG00000177697	CD151	GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24	CD151 molecule (Raph blood group)	protein-coding
0.218195-11	chrX	150010983	150011482	+	0	NA	intron (NM_134445, intron 1 of 7)	MER3|DNA|hAT-Charlie	56057	NM_134445	83692	Hs.522805	NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding
8.9279-10	chr14	70166532	70167031	+	0	NA	intron (NM_014734, intron 2 of 5)	LTR9|LTR|ERV1	-67023	NM_001320214	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
0.414361-18	chr3	14493574	14494073	+	0	NA	intron (NR_103507, intron 5 of 13)	intron (NR_103507, intron 5 of 13)	49747	NM_001134368	6533	Hs.529488	NM_003043	ENSG00000131389	SLC6A6	TAUT	solute carrier family 6 member 6	protein-coding
10.6048-2	chr2	2295313	2295812	+	0	NA	intron (NM_001329851, intron 1 of 23)	intron (NM_001329851, intron 1 of 23)	-27442	NR_024468	730811	Hs.629472	NR_024468	ENSG00000225619	MYT1L-AS1	-	MYT1L antisense RNA 1	ncRNA
12.7246	chr16	5022498	5022997	+	0	NA	intron (NM_014692, intron 2 of 15)	L1MB3|LINE|L1	14429	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
7.87812-9	chr15	29695907	29696406	+	0	NA	intron (NM_015307, intron 1 of 10)	intron (NM_015307, intron 1 of 10)	-134136	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
0.467237-4	chr17	75062760	75063259	+	0	NA	Intergenic	Intergenic	-21716	NM_001204408	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
3.05395	chr19	14639988	14640487	+	0	NA	promoter-TSS (NR_030369)	promoter-TSS (NR_030369)	-103	NM_001313964	3337	Hs.515210	NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
10.4769-5	chr22	32707431	32707930	+	0	NA	Intergenic	L2a|LINE|L2	-43192	NM_006604	10738	Hs.558455	NM_006604	ENSG00000128276	RFPL3	-	ret finger protein like 3	protein-coding
9.50782-18	chr16	79196766	79197265	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	437607	NM_001031804	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
0.9691-15	chr15	50548497	50548996	+	0	NA	intron (NM_002112, intron 4 of 11)	AluJb|SINE|Alu	9416	NM_002112	3067	Hs.1481	NM_002112	ENSG00000140287	HDC	-	histidine decarboxylase	protein-coding
17.2816-5	chr5	141700324	141700823	+	0	NA	intron (NM_030964, intron 1 of 2)	intron (NM_030964, intron 1 of 2)	-2686	NR_131221	100642175	Hs.684549	NR_131221	ENSG00000281881	SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
28.9963-2	chr2	22242963	22243462	+	0	NA	Intergenic	Intergenic	-309688	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
0.0612309-15	chr7	26480427	26480926	+	0	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	37568	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
0.5061-15	chr7	88388725	88389224	+	0	NA	5' UTR (NM_181646, exon 1 of 4)	5' UTR (NM_181646, exon 1 of 4)	292	NM_181646	219578	Hs.684410	NM_181646	ENSG00000182348	ZNF804B	-	zinc finger protein 804B	protein-coding
0.888424-36	chr11	67525321	67525820	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	47237	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
1.11821-13	chr12	133006779	133007278	+	0	NA	Intergenic	Intergenic	-60129	NM_001142641	57666	Hs.411138	NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
7.37549-8	chr12	102217619	102218118	+	0	NA	intron (NM_024312, intron 1 of 20)	MLT1K|LTR|ERVL-MaLR	6777	NM_024312	79158	Hs.46850	NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase alpha and beta subunits	protein-coding
5.00313-4	chr19	59117526	59118025	+	0	NA	Intergenic	TAR1|Satellite|telo	31009	NR_026052	65996	Hs.541177	NM_023939	ENSG00000213753	CENPBD1P1	-	CENPB DNA-binding domains containing 1 pseudogene 1	pseudo
0.736576-21	chr1	156391091	156391590	+	0	NA	intron (NR_135266, intron 1 of 2)	CpG	218	NM_001320454	10485	Hs.380027	NM_006365	ENSG00000125462	C1orf61	CROC4	chromosome 1 open reading frame 61	protein-coding
0.0305075-58	chr11	109514765	109515264	+	0	NA	Intergenic	Intergenic	222168	NM_207645	399947	Hs.172982	NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
0.0348833-11	chr20	7999432	7999931	+	0	NA	intron (NM_021156, intron 1 of 7)	intron (NM_021156, intron 1 of 7)	795	NM_021156	56255	Hs.169358	NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
2.38824-3	chr6	27486459	27486958	+	0	NA	Intergenic	Intergenic	-45811	NM_001347832	7738	Hs.158174	NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
0.301184-23	chr2	79088610	79089109	+	0	NA	Intergenic	Intergenic	-163953	NM_198448	130120	Hs.447084	NM_198448	ENSG00000143954	REG3G	LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429	regenerating family member 3 gamma	protein-coding
0.213631-12	chrX	123093343	123093842	+	0	NA	promoter-TSS (NM_001042749)	promoter-TSS (NM_001042749)	-818	NM_001042749	10735	Hs.496710	NM_006603	ENSG00000101972	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding
14.1794	chr1	224835266	224835765	+	0	NA	intron (NR_136287, intron 1 of 4)	intron (NR_136287, intron 1 of 4)	31336	NM_152495	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
0.118872-27	chr3	129158185	129158684	+	0	NA	promoter-TSS (NM_018262)	promoter-TSS (NM_018262)	-445	NM_052990	55764	Hs.655284	NM_018262	ENSG00000163913	IFT122	CED|CED1|SPG|WDR10|WDR10p|WDR140	intraflagellar transport 122	protein-coding
0.305841-20	chr13	98796021	98796520	+	0	NA	intron (NM_005766, intron 1 of 26)	intron (NM_005766, intron 1 of 26)	918	NM_005766	10160	Hs.403917	NM_005766	ENSG00000152767	FARP1	CDEP|FARP1-IT1|PLEKHC2|PPP1R75	FERM, ARH/RhoGEF and pleckstrin domain protein 1	protein-coding
2.31362	chr11	43380813	43381312	+	0	NA	intron (NM_018259, intron 1 of 23)	intron (NM_018259, intron 1 of 23)	627	NM_018259	55761	Hs.191186	NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
0.851282-3	chr15	99987651	99988150	+	0	NA	Intergenic	Intergenic	-118233	NM_001171894	4205	Hs.268675	NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
0.996329-31	chr9	140708462	140708961	+	0	NA	intron (NM_024757, intron 21 of 26)	intron (NM_024757, intron 21 of 26)	-24160	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	ncRNA
1.36083-3	chr2	32425462	32425961	+	0	NA	intron (NM_001193514, intron 10 of 12)	SVA_D|Other|Other	34801	NM_017964	55676	Hs.23248	NM_017964	ENSG00000152683	SLC30A6	MST103|MSTP103|ZNT6	solute carrier family 30 member 6	protein-coding
2.35077-5	chr3	122102738	122103237	+	0	NA	promoter-TSS (NM_001017928)	promoter-TSS (NM_001017928)	-36	NM_014367	26355	Hs.584881	NM_014367	ENSG00000114023	FAM162A	C3orf28|E2IG5|HGTD-P	family with sequence similarity 162 member A	protein-coding
1.11821-22	chr16	81437094	81437593	+	0	NA	Intergenic	CpG	18720	NR_039871	100616150		NR_039871	ENSG00000261609	MIR4720	-	microRNA 4720	ncRNA
18.3863-7	chr3	140866432	140866931	+	0	NA	3' UTR (NM_080862, exon 3 of 3)	3' UTR (NM_080862, exon 3 of 3)	-83986	NM_152282	92370	Hs.657887	NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
0.0966115-6	chr16	29711726	29712225	+	0	NA	Intergenic	Intergenic	21646	NM_001318249	23475	Hs.513484	NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
16.1618-10	chr3	177900084	177900583	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-236656	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
0.700704-2	chr9	112541987	112542486	+	0	NA	promoter-TSS (NM_053016)	promoter-TSS (NM_053016)	-341	NM_053016	114299	Hs.591908	NM_053016	ENSG00000157654	PALM2	AKAP2	paralemmin 2	protein-coding
0.94744-14	chr17	12927216	12927715	+	0	NA	Intergenic	L2c|LINE|L2	-6084	NM_173717	60528	Hs.434232	NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
0.145735-2	chrX	152989842	152990341	+	0	NA	promoter-TSS (NM_001139441)	promoter-TSS (NM_001139441)	110	NM_001256447	10134	Hs.522817	NM_005745	ENSG00000185825	BCAP31	6C6-AG|BAP31|CDM|DDCH|DXS1357E	B-cell receptor-associated protein 31	protein-coding
6.00326	chr1	59834751	59835250	+	0	NA	intron (NR_103473, intron 5 of 16)	L1PA3|LINE|L1	59250	NM_001244714	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
3.15155-4	chr11	7594814	7595313	+	0	NA	intron (NM_003621, intron 3 of 23)	intron (NM_003621, intron 3 of 23)	-23354	NM_001256568	8495	Hs.655714	NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
16.0906-4	chr1	36771714	36772213	+	0	NA	promoter-TSS (NM_001162530)	promoter-TSS (NM_001162530)	-31	NM_001162530	79729	Hs.524496	NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
1.01824-5	chr11	12143541	12144040	+	0	NA	intron (NM_001346293, intron 2 of 26)	MIRb|SINE|MIR	11667	NM_001346295	9645	Hs.501928	NM_014632	ENSG00000133816	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
2.05512-12	chr4	130847987	130848486	+	0	NA	Intergenic	Intergenic	-155603	NR_110753	101927282	Hs.407480	NR_110753	ENSG00000246876	LOC101927282	-	uncharacterized LOC101927282	ncRNA
12.4718-8	chr7	126763847	126764346	+	0	NA	intron (NM_001127323, intron 2 of 10)	L2|LINE|L2	-65858	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
7.25842-4	chr1	10458710	10459209	+	0	NA	promoter-TSS (NM_001304451)	promoter-TSS (NM_001304451)	-90	NM_002631	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
0.186345-9	chr3	142720879	142721378	+	0	NA	promoter-TSS (NR_034032)	promoter-TSS (NR_034032)	756	NM_001320222	23350	Hs.596572	NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
3.86158-4	chr3	52099072	52099571	+	0	NA	promoter-TSS (NR_027331)	promoter-TSS (NR_027331)	-193	NR_027331	100128378	Hs.640106	NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
4.89455-15	chr2	98746795	98747294	+	0	NA	intron (NR_144296, intron 6 of 28)	LTR5_Hs|LTR|ERVK	-18914	NM_001345864	200403	Hs.269977	NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
1.16339	chr19	530846	531345	+	0	NA	promoter-TSS (NM_004359)	promoter-TSS (NM_004359)	-638	NM_004359	997	Hs.514997	NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34	protein-coding
0.741724-4	chr20	22314705	22315204	+	0	NA	Intergenic	Intergenic	-51515	NR_110615	101929663	Hs.143562	NR_110615	ENSG00000225321	LINC01427	-	long intergenic non-protein coding RNA 1427	ncRNA
16.2525	chr9	79520904	79521403	+	0	NA	promoter-TSS (NR_131751)	promoter-TSS (NR_131751)	-150	NM_001308047	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding
0.0305075-35	chr3	115509517	115510016	+	0	NA	Intergenic	Intergenic	167615	NM_001130064	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
14.9485-11	chr8	103424881	103425380	+	0	NA	promoter-TSS (NM_001282873)	promoter-TSS (NM_001282873)	-213	NM_001282873	51366	Hs.492445	NM_015902	ENSG00000104517	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding
6.6354-5	chr2	124816210	124816709	+	0	NA	intron (NM_130773, intron 1 of 23)	intron (NM_130773, intron 1 of 23)	33595	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
19.9568-4	chr2	156381644	156382143	+	0	NA	Intergenic	MER130|Unknown?|Unknown?	729550	NR_110249	101929378	Hs.171192	NR_110249	ENSG00000226383	LINC01876	-	long intergenic non-protein coding RNA 1876	ncRNA
0.9691-3	chr6	139350214	139350713	+	0	NA	intron (NM_021243, intron 1 of 2)	CpG	644	NM_021243	58527	Hs.600861	NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
1.18615-8	chr1	162115521	162116020	+	0	NA	intron (NM_014697, intron 1 of 9)	intron (NM_014697, intron 1 of 9)	-11127	NR_039798	100616386		NR_039798	ENSG00000266144	MIR4654	mir-4654	microRNA 4654	ncRNA
2.11832-12	chr18	23806085	23806584	+	0	NA	promoter-TSS (NM_001293725)	promoter-TSS (NM_001293725)	-513	NR_121653	6875	Hs.369519	NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
3.27902-12	chr4	180336904	180337403	+	0	NA	Intergenic	Intergenic	-1508063	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
3.05395-9	chr10	70939479	70939978	+	0	NA	promoter-TSS (NM_001301683)	promoter-TSS (NM_001301683)	-232	NM_003171	6832	Hs.106469	NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
15.1428-2	chrX	117103230	117103729	+	0	NA	intron (NM_001168303, intron 1 of 6)	intron (NM_001168303, intron 1 of 6)	4222	NM_033495	90293	Hs.348262	NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
1.39662-14	chr20	14561063	14561562	+	0	NA	intron (NR_104193, intron 1 of 4)	intron (NR_104193, intron 1 of 4)	26282	NR_104193	140848	Hs.570367	NR_104193	ENSG00000227927	MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1	ncRNA
0.254883-60	chr2	218782964	218783463	+	0	NA	intron (NM_001308023, intron 1 of 29)	L3b|LINE|CR1	1746	NM_001308023	7145	Hs.471381	NM_022648	ENSG00000079308	TNS1	MST091|MST122|MST127|MSTP091|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
10.5601-4	chr8	125092802	125093301	+	0	NA	intron (NM_001039112, intron 32 of 40)	intron (NM_001039112, intron 32 of 40)	-40028	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
1.07349-10	chr12	110841157	110841656	+	0	NA	exon (NM_001137664, exon 1 of 10)	exon (NM_001137664, exon 1 of 10)	129	NM_016238	51434	Hs.719935	NM_016238	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
0.301184-7	chr17	77967263	77967762	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	42145	NM_019020	125058	Hs.369819	NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
0.76756-11	chr1	154192898	154193397	+	0	NA	promoter-TSS (NM_014847)	promoter-TSS (NM_014847)	126	NM_001297720	25912	Hs.287471	NM_015449	ENSG00000143612	C1orf43	HSPC012|NICE-3|NS5ATP4|S863-3	chromosome 1 open reading frame 43	protein-coding
1.81774-4	chr8	86573129	86573628	+	0	NA	TTS (NR_003594).2	TTS (NR_003594).2	1364	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog-like 2, pseudogene	pseudo
9.24453-11	chr16	85293017	85293516	+	0	NA	Intergenic	Intergenic	-23298	NR_038859	197196	Hs.679002	NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
4.38899-2	chr16	48569989	48570488	+	0	NA	intron (NR_039970, intron 2 of 4)	intron (NR_039970, intron 2 of 4)	73882	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
2.82329-18	chr3	155679426	155679925	+	0	NA	Intergenic	SVA_C|Other|Other	91350	NM_003875	8833	Hs.591314	NM_003875	ENSG00000163655	GMPS	-	guanine monophosphate synthase	protein-coding
1.37272-14	chr13	50509929	50510428	+	0	NA	intron (NM_020456, intron 1 of 4)	CpG	459	NR_023351	57213	Hs.44235	NM_020456	ENSG00000123178	SPRYD7	C13orf1|CLLD6	SPRY domain containing 7	protein-coding
0.0130484-11	chr18	22236410	22236909	+	0	NA	intron (NR_040033, intron 1 of 2)	L2a|LINE|L2	28513	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LINC01915	-	long intergenic non-protein coding RNA 1915	ncRNA
1.77178-13	chr16	63448797	63449296	+	0	NA	Intergenic	Intergenic	-1378307	NM_001796	1006	Hs.368322	NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
0.305841-21	chrX	128977346	128977845	+	0	NA	promoter-TSS (NM_001008222)	promoter-TSS (NM_001008222)	-34	NM_001008222	51114	Hs.193566	NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type containing 9	protein-coding
0.634863-10	chrUn_gl000223	68444	68943	+	0	NA	promoter-TSS (NR_110091).2	promoter-TSS (NR_110091).2	100	NM_001127372	7637	Hs.445019	NM_003428	ENSG00000198040	ZNF84	HPF2	zinc finger protein 84	protein-coding
2.82329-23	chr7	102920635	102921134	+	0	NA	promoter-TSS (NR_003561)	promoter-TSS (NR_003561)	29	NR_027768	349152	Hs.732579	NM_182634	ENSG00000170629	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
1.31944-16	chr12	2986254	2986753	+	0	NA	promoter-TSS (NM_001243089)	promoter-TSS (NM_001243089)	138	NM_001257098	83695	Hs.198853	NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
9.35542-7	chr12	115874808	115875307	+	0	NA	Intergenic	Intergenic	711402	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
3.53596	chr1	5225703	5226202	+	0	NA	Intergenic	Intergenic	-398179	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	mir-4417	microRNA 4417	ncRNA
3.36299-3	chr13	27254167	27254666	+	0	NA	intron (NM_001291965, intron 7 of 9)	intron (NM_001291965, intron 7 of 9)	80506	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
1.22629-29	chr6	107437382	107437881	+	0	NA	Intergenic	Intergenic	-1995	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
1.26098-22	chr8	85185291	85185790	+	0	NA	intron (NM_001100391, intron 1 of 8)	MLT1F2|LTR|ERVL-MaLR	88440	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
4.24812-5	chr6	92672783	92673282	+	0	NA	Intergenic	Intergenic	-272886	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
2.78189-7	chr13	113739626	113740125	+	0	NA	intron (NM_024979, intron 20 of 29)	intron (NM_024979, intron 20 of 29)	-20227	NM_001267554	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
0.268721-4	chr7	16735198	16735697	+	0	NA	intron (NR_027624, intron 7 of 10)	intron (NR_027624, intron 7 of 10)	49688	NR_027624	28969	Hs.487635	NM_014038	ENSG00000136261	BZW2	HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
0.419142-2	chr11	67771366	67771865	+	0	NA	promoter-TSS (NM_030930)	promoter-TSS (NM_030930)	-20	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
0.0130484-4	chr3	66660371	66660870	+	0	NA	Intergenic	Intergenic	-109775	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
0.893756-2	chr6	28806467	28806966	+	0	NA	Intergenic	CpG	24738	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
0.0921731-33	chr3	126422540	126423039	+	0	NA	promoter-TSS (NM_032343)	promoter-TSS (NM_032343)	-274	NM_032343	84303	Hs.518119	NM_032343	ENSG00000159685	CHCHD6	CHCM1|Mic25|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
1.62412-17	chr12	122356182	122356681	+	0	NA	promoter-TSS (NM_144668)	promoter-TSS (NM_144668)	-32	NM_001178003	144406	Hs.709837	NM_144668	ENSG00000158023	WDR66	CaM-IP4	WD repeat domain 66	protein-coding
5.70248-8	chr11	189892	190391	+	0	NA	Intergenic	TAR1|Satellite|telo	-2939	NM_001097610	653486	Hs.127059	NM_001097610	ENSG00000268320	SCGB1C2	-	secretoglobin family 1C member 2	protein-coding
5.52842-8	chr3	195459736	195460235	+	0	NA	intron (NM_001291833, intron 5 of 5)	intron (NM_001291833, intron 5 of 5)	12232	NM_001291833	200958	Hs.308992	NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
0.296531-64	chr7	51147118	51147617	+	0	NA	intron (NM_001287438, intron 7 of 7)	intron (NM_001287438, intron 7 of 7)	237191	NM_001346442	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
0.888424-48	chr5	27315634	27316133	+	0	NA	Intergenic	Intergenic	-156516	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
19.5468-4	chr14	73392816	73393315	+	0	NA	promoter-TSS (NM_181341)	promoter-TSS (NM_181341)	25	NM_001163508	26094	Hs.331491	NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
16.7778-6	chr9	140639894	140640393	+	0	NA	intron (NM_024757, intron 6 of 26)	intron (NM_024757, intron 6 of 26)	-17331	NR_024341	643210	Hs.721002	NM_001039765		EHMT1-IT1	-	EHMT1 intronic transcript 1	ncRNA
4.24812-16	chr1	236305599	236306098	+	0	NA	promoter-TSS (NM_003272)	promoter-TSS (NM_003272)	16	NM_003272	7107	Hs.498160	NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
4.93495-2	chr17	4806576	4807075	+	0	NA	promoter-TSS (NM_000080)	promoter-TSS (NM_000080)	-456	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
6.32644-13	chr18	21083145	21083644	+	0	NA	promoter-TSS (NM_001318707)	promoter-TSS (NM_001318707)	-40	NM_001318708	29919	Hs.464779	NM_013326	ENSG00000141452	C18orf8	HsT2591|MIC1|Mic-1	chromosome 18 open reading frame 8	protein-coding
4.37707-6	chr7	148787329	148787828	+	0	NA	intron (NM_152411, intron 1 of 3)	CpG	291	NM_152411	136051	Hs.729572	NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
3.29754-17	chr22	29739182	29739681	+	0	NA	intron (NM_001127, intron 11 of 22)	intron (NM_001127, intron 11 of 22)	-10175	NR_037426	100500833		NR_037426	ENSG00000280968	MIR3653	mir-3653	microRNA 3653	ncRNA
1.9044-14	chr1	22909424	22909923	+	0	NA	intron (NM_001006943, intron 3 of 4)	intron (NM_001006943, intron 3 of 4)	19678	NM_001006943	2046	Hs.283613	NM_020526	ENSG00000070886	EPHA8	EEK|EK3|HEK3	EPH receptor A8	protein-coding
21.3966	chr7	79451804	79452303	+	0	NA	Intergenic	Intergenic	-312087	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
24.4733-4	chr2	20822840	20823339	+	0	NA	intron (NM_022460, intron 6 of 6)	MIRb|SINE|MIR	27775	NM_022460	64342	Hs.531785	NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
2.47184-9	chr16	48657051	48657550	+	0	NA	intron (NR_039970, intron 4 of 4)	intron (NR_039970, intron 4 of 4)	-13180	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
0.190881-22	chr5	43313578	43314077	+	0	NA	promoter-TSS (NM_001324223)	promoter-TSS (NM_001324223)	-213	NM_001324224	3157	Hs.397729	NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
2.32844-8	chr5	75115068	75115567	+	0	NA	Intergenic	SVA_D|Other|Other	-102004	NM_001099271	134359	Hs.432726	NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
8.09668-3	chr6	150594959	150595458	+	0	NA	Intergenic	Intergenic	-94820	NM_001164695	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
14.8945	chr12	130947177	130947676	+	0	NA	intron (NM_015347, intron 3 of 18)	LTR82A|LTR|ERVL	54984	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
1.50581-13	chrX	50434665	50435164	+	0	NA	intron (NR_027121, intron 2 of 9)	intron (NR_027121, intron 2 of 9)	122130	NR_027121	57477	Hs.420541	NM_020717	ENSG00000158352	SHROOM4	SHAP	shroom family member 4	protein-coding
1.70053-13	chr6	159495271	159495770	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-29336	NM_054114	117289	Hs.529984	NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
1.64309-4	chr10	5726407	5726906	+	0	NA	promoter-TSS (NM_017782)	promoter-TSS (NM_017782)	-145	NM_001321785	54906	Hs.610717	NM_017782	ENSG00000108021	FAM208B	C10orf18|bA318E3.2	family with sequence similarity 208 member B	protein-coding
3.49692-20	chr11	18343530	18344293	+	0	NA	promoter-TSS (NM_001142307)	promoter-TSS (NM_001142307)	95	NM_005316	2965	Hs.577202	NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
0.101054-6	chr5	45507365	45507864	+	0	NA	intron (NM_021072, intron 2 of 7)	intron (NM_021072, intron 2 of 7)	188606	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
1.97226-2	chr18	46502398	46502897	+	0	NA	Intergenic	CpG	-25566	NM_005904	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
0.530567-5	chr6	14800043	14800542	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-445914	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
1.66853-10	chrX	135550692	135551191	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-19184	NM_001727	680	Hs.121484	NM_001727	ENSG00000102239	BRS3	BB3|BB3R	bombesin receptor subtype 3	protein-coding
22.161	chr7	13757264	13757763	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	268626	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
8.15309-9	chr15	70354732	70355231	+	0	NA	intron (NM_001105192, intron 8 of 19)	intron (NM_001105192, intron 8 of 19)	16826	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
0.899095-17	chr7	92053732	92054231	+	0	NA	intron (NM_001317905, intron 5 of 9)	intron (NM_001317905, intron 5 of 9)	12647	NM_001317905	105375396		NM_001317905	ENSG00000230927	LOC105375396	-	bax inhibitor 1-like	protein-coding
6.75718	chr16	90012046	90012545	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2844	NM_001242821	54849	Hs.62771	NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
1.21478-21	chr20	23331636	23332135	+	0	NA	intron (NM_013248, intron 1 of 1)	CpG	512	NM_013248	29107	Hs.516933	NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
17.9588-6	chr9	80716050	80716549	+	0	NA	Intergenic	Intergenic	-69934	NM_002072	2776	Hs.269782	NM_002072	ENSG00000156052	GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
0.594835-25	chr17	48277452	48277951	+	0	NA	intron (NM_000088, intron 1 of 50)	CpG-10867	1299	NM_000088	1277	Hs.172928	NM_000088	ENSG00000108821	COL1A1	EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
0.395292-13	chr3	127504591	127505090	+	0	NA	intron (NM_001003794, intron 2 of 7)	intron (NM_001003794, intron 2 of 7)	36885	NM_007283	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
15.1145-4	chr20	24362936	24363435	+	0	NA	Intergenic	Intergenic	-86650	NM_001323606	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
1.91789-6	chr20	58515236	58515735	+	0	NA	promoter-TSS (NM_022106)	promoter-TSS (NM_022106)	41	NM_022106	63939	Hs.54973	NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
0.589858-18	chr7	69373349	69373848	+	0	NA	intron (NM_015570, intron 2 of 18)	intron (NM_015570, intron 2 of 18)	309693	NM_015570	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
4.65974-12	chr16	85418384	85418883	+	0	NA	Intergenic	Intergenic	-78702	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
1.49354-2	chr2	45208557	45209056	+	0	NA	Intergenic	Intergenic	27736	NM_016932	10736	Hs.101937	NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
2.61219-13	chr12	56333938	56334437	+	0	NA	exon (NM_001345, exon 11 of 24)	exon (NM_001345, exon 11 of 24)	8375	NM_201554	1606	Hs.524488	NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
0.338583	chr19	42675846	42676345	+	0	NA	Intergenic	Intergenic	-38430	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
4.28291-13	chr2	132285681	132286180	+	0	NA	intron (NM_001258304, intron 1 of 7)	CpG	523	NM_001258304	90557	Hs.351461	NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
1.02923-13	chr4	114004146	114004645	+	0	NA	intron (NM_001148, intron 1 of 45)	AluJr4|SINE|Alu	-23624	NR_031641	100302188		NR_031641	ENSG00000283193	MIR1243	MIRN1243|hsa-mir-1243	microRNA 1243	ncRNA
1.89767-11	chr6	153450907	153451406	+	0	NA	intron (NM_012419, intron 1 of 4)	CpG	1233	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
9.87163-5	chr20	9059664	9060163	+	0	NA	intron (NM_001172646, intron 1 of 37)	LTR33|LTR|ERVL	10212	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C beta 4	protein-coding
1.00727-11	chrX	100603740	100604239	+	0	NA	promoter-TSS (NM_004085)	promoter-TSS (NM_004085)	-32	NM_004085	1678	Hs.447877	NM_004085	ENSG00000126953	TIMM8A	DDP|DDP1|DFN1|MTS|TIM8	translocase of inner mitochondrial membrane 8 homolog A (yeast)	protein-coding
7.14443-5	chr2	159455567	159456066	+	0	NA	intron (NM_001005476, intron 3 of 20)	intron (NM_001005476, intron 3 of 20)	135698	NR_135242	100129029	Hs.630724	NR_135242	ENSG00000204380	PKP4-AS1	-	PKP4 antisense RNA 1	ncRNA
5.83359-21	chr18	712305	712804	+	0	NA	promoter-TSS (NM_202758)	promoter-TSS (NM_202758)	-37	NM_202758	55556	Hs.658550	NM_017512	ENSG00000132199	ENOSF1	RTS|TYMSAS	enolase superfamily member 1	protein-coding
6.69586-7	chr1	82854263	82854762	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	588430	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
0.428718-38	chr2	171627310	171627809	+	0	NA	promoter-TSS (NR_110185)	promoter-TSS (NR_110185)	-283	NR_110185	101926913	Hs.301715	NR_110185		LOC101926913	-	uncharacterized LOC101926913	ncRNA
8.72895-8	chr3	138820120	138820619	+	0	NA	Intergenic	Intergenic	-2658	NR_026783	60467	Hs.512673	NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)	ncRNA
0.457575-6	chr19	47289245	47289744	+	0	NA	intron (NM_005628, intron 1 of 7)	intron (NM_005628, intron 1 of 7)	1051	NM_001145144	6510	Hs.631582	NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
13.4582-2	chr7	103292380	103292879	+	0	NA	intron (NM_173054, intron 14 of 63)	intron (NM_173054, intron 14 of 63)	-206005	NM_206885	375611	Hs.585146	NM_198999	ENSG00000170615	SLC26A5	DFNB61|PRES	solute carrier family 26 member 5	protein-coding
3.87216-10	chr15	102381738	102382237	+	0	NA	promoter-TSS (NR_046417)	promoter-TSS (NR_046417)	-335	NR_046417	390651	Hs.578689	NR_046417	ENSG00000214344	OR4F13P	GPCRLTM7	olfactory receptor family 4 subfamily F member 13 pseudogene	pseudo
5.65431-2	chr2	232478468	232478967	+	0	NA	Intergenic	CpG	21142	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
23.1336	chr3	587517	588016	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-46022	NR_110118	101927215	Hs.650700	NR_110118	ENSG00000224957	LINC01266	-	long intergenic non-protein coding RNA 1266	ncRNA
1.22629-26	chr4	56914958	56915457	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-48388	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
6.73664	chr8	80872142	80872641	+	0	NA	intron (NM_014018, intron 2 of 2)	intron (NM_014018, intron 2 of 2)	70115	NM_014018	28957	Hs.521124	NM_014018	ENSG00000147586	MRPS28	HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
10.2228-4	chr8	124778376	124778875	+	0	NA	Intergenic	Intergenic	-2054	NM_001317917	157769	Hs.459174	NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
1.46302-12	chr6	143092223	143092722	+	0	NA	exon (NM_006734, exon 5 of 10)	exon (NM_006734, exon 5 of 10)	-133446	NR_027312	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
0.287242-11	chr19	49149359	49149858	+	0	NA	promoter-TSS (NM_001217)	promoter-TSS (NM_001217)	-39	NR_136241	770	Hs.428446	NM_001217	ENSG00000063180	CA11	CARPX1	carbonic anhydrase 11	protein-coding
0.296531-2	chr12	91371841	91372340	+	0	NA	intron (NM_004950, intron 2 of 6)	intron (NM_004950, intron 2 of 6)	-23137	NM_152638	196477	Hs.128574	NM_152638	ENSG00000197651	CCER1	C12orf12	coiled-coil glutamate rich protein 1	protein-coding
0.0436481-14	chr8	135273782	135274281	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-336283	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
17.4958-2	chr13	111177828	111178327	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	-17551	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
5.05845-6	chr12	27006739	27007264	+	0	NA	Intergenic	Intergenic	-20870	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
5.36107-8	chr2	26910126	26910625	+	0	NA	Intergenic	Intergenic	-5206	NM_002246	3777	Hs.24040	NM_002246	ENSG00000171303	KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium two pore domain channel subfamily K member 3	protein-coding
33.3255	chr3	170246419	170246918	+	0	NA	intron (NM_020949, intron 1 of 7)	intron (NM_020949, intron 1 of 7)	57195	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding
0.624821	chr19	41054996	41055495	+	0	NA	exon (NM_025213, exon 4 of 10)	exon (NM_025213, exon 4 of 10)	18850	NM_025213	57731	Hs.32706	NM_020971	ENSG00000160460	SPTBN4	QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
2.44125-10	chr8	329696	330492	+	0	NA	non-coding (NR_103537, exon 3 of 4)	non-coding (NR_103537, exon 3 of 4)	3080	NR_103537	157693	Hs.591390	NR_103537	ENSG00000182366	FAM87A	-	family with sequence similarity 87 member A	ncRNA
0.118872-31	chr2	239419544	239420043	+	0	NA	non-coding (NR_037809, exon 3 of 3)	non-coding (NR_037809, exon 3 of 3)	44347	NR_037809	151171	Hs.652076	NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA
3.45823-3	chr12	108154069	108155032	+	0	NA	TTS (NR_120474)	TTS (NR_120474)	364	NM_012406	11108	Hs.506655	NM_012406	ENSG00000110851	PRDM4	PFM1	PR/SET domain 4	protein-coding
0.34328-20	chr17	42404080	42404579	+	0	NA	Intergenic	Intergenic	-2091	NM_016016	51629	Hs.744880	NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
5.157-3	chr1	180555717	180556216	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	27856	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
3.83-9	chr4	177159443	177159942	+	0	NA	intron (NM_080874, intron 1 of 6)	intron (NM_080874, intron 1 of 6)	30681	NM_080874	140458	Hs.591712	NM_080874	ENSG00000164122	ASB5	ASB-5	ankyrin repeat and SOCS box containing 5	protein-coding
1.07349-16	chr2	47534110	47534609	+	0	NA	intron (NR_110207, intron 1 of 2)	intron (NR_110207, intron 1 of 2)	37854	NR_110207	101927043	Hs.515976	NR_110207	ENSG00000234690	LOC101927043	-	uncharacterized LOC101927043	ncRNA
0.296531-107	chr8	128436601	128437100	+	0	NA	intron (NR_117100, intron 4 of 5)	intron (NR_117100, intron 4 of 5)	8993	NM_001159542	5462	Hs.450254	NM_001159542	ENSG00000212993	POU5F1B	OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
0.145735-8	chr1	99471109	99471608	+	0	NA	promoter-TSS (NM_001010861)	promoter-TSS (NM_001010861)	-909	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	PLPPR5	LPPR5|PAP2|PAP2D|PRG5	phospholipid phosphatase related 5	protein-coding
0.338583-7	chr9	124397166	124397665	+	0	NA	intron (NM_032552, intron 1 of 16)	intron (NM_032552, intron 1 of 16)	68034	NM_032552	153090	Hs.522378	NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
7.23538-2	chr4	89741216	89741715	+	0	NA	intron (NM_014883, intron 7 of 23)	intron (NM_014883, intron 7 of 23)	3047	NM_001265578	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
0.301184-13	chr7	88175979	88176478	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-212454	NM_181646	219578	Hs.684410	NM_181646	ENSG00000182348	ZNF804B	-	zinc finger protein 804B	protein-coding
4.89455-9	chr6	158402672	158403171	+	0	NA	promoter-TSS (NM_003898)	promoter-TSS (NM_003898)	33	NM_003898	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
4.74955-4	chr16	62075222	62075721	+	0	NA	Intergenic	Intergenic	-4732	NM_001796	1006	Hs.368322	NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
2.95849-3	chr20	61568549	61569048	+	0	NA	promoter-TSS (NM_017896)	promoter-TSS (NM_017896)	506	NM_033081	11083	Hs.517172	NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
0.385789-20	chr6	126307967	126308466	+	0	NA	intron (NM_001031712, intron 1 of 12)	L2c|LINE|L2	640	NM_001031712	60487	Hs.404186	NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
19.0658-5	chr2	42173057	42173556	+	0	NA	intron (NM_001242815, intron 3 of 3)	L2c|LINE|L2	7637	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
2.50264-7	chr5	34411380	34411879	+	0	NA	Intergenic	Intergenic	-244804	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
2.24754-10	chr6	88117544	88118043	+	0	NA	5' UTR (NM_001031743, exon 1 of 13)	5' UTR (NM_001031743, exon 1 of 13)	103	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	CFAP206	C6orf165|dJ382I10.1	cilia and flagella associated protein 206	protein-coding
8.26814-24	chr2	175449809	175450308	+	0	NA	intron (NM_001077269, intron 2 of 7)	intron (NM_001077269, intron 2 of 7)	-27258	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
7.4958-4	chr2	26117300	26117799	+	0	NA	Intergenic	Intergenic	-16237	NM_018263	55252	Hs.119815	NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	additional sex combs like 2, transcriptional regulator	protein-coding
2.52588-15	chr5	132299130	132299629	+	0	NA	promoter-TSS (NM_014423)	promoter-TSS (NM_014423)	-25	NM_014423	27125	Hs.519313	NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	AF4/FMR2 family member 4	protein-coding
0.491485	chr12	110010877	110011376	+	0	NA	promoter-TSS (NM_000431)	promoter-TSS (NM_000431)	232	NM_052845	326625	Hs.12106	NM_052845	ENSG00000139428	MMAB	ATR|CFAP23|cblB|cob	methylmalonic aciduria (cobalamin deficiency) cblB type	protein-coding
2.66803-3	chr7	21985231	21985730	+	0	NA	promoter-TSS (NM_018719)	promoter-TSS (NM_018719)	62	NM_001127370	55536	Hs.744069	NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
0.579919	chr20	48737374	48737873	+	0	NA	intron (NM_199203, intron 5 of 7)	intron (NM_199203, intron 5 of 7)	-5127	NM_001257393	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
8.60121-3	chr16	57636000	57636499	+	0	NA	Intergenic	Intergenic	-17356	NM_001290143	9289	Hs.513633	NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
0.0612309-7	chr11	35965384	35965883	+	0	NA	5' UTR (NM_001304263, exon 1 of 5)	5' UTR (NM_001304263, exon 1 of 5)	102	NM_001304263	143458	Hs.745134	NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
6.53647-2	chr1	24015763	24016262	+	0	NA	Intergenic	SVA_D|Other|Other	-2257	NM_000975	6135	Hs.719951	NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11	ribosomal protein L11	protein-coding
0.150229-2	chr17	51245411	51245910	+	0	NA	Intergenic	Intergenic	182780	NM_001243552	100506650	Hs.146556	NM_001243552		C17orf112	-	chromosome 17 open reading frame 112	protein-coding
5.01689-4	chr11	13690315	13691193	+	0	NA	intron (NM_032228, intron 1 of 11)	intron (NM_032228, intron 1 of 11)	548	NM_032228	84188	Hs.501991	NM_032228	ENSG00000197601	FAR1	MLSTD2|PFCRD|SDR10E1	fatty acyl-CoA reductase 1	protein-coding
0.433514-6	chr9	130352065	130352564	+	0	NA	Intergenic	Intergenic	-11028	NM_001035534	64855	Hs.522401	NM_022833	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129 member B	protein-coding
1.54282-6	chr11	128756222	128756721	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-4842	NM_000890	3762	Hs.444595	NM_000890	ENSG00000120457	KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium voltage-gated channel subfamily J member 5	protein-coding
2.72459-7	chr7	158324318	158324817	+	0	NA	TTS (NR_030325)	TTS (NR_030325)	938	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
0.856568-16	chrX	21392040	21392539	+	0	NA	promoter-TSS (NM_014927)	promoter-TSS (NM_014927)	-127	NM_001330773	22866	Hs.555917	NM_014927	ENSG00000149970	CNKSR2	CNK2|KSR2|MAGUIN	connector enhancer of kinase suppressor of Ras 2	protein-coding
9.58607-5	chr18	9136492	9136991	+	0	NA	promoter-TSS (NR_110771)	promoter-TSS (NR_110771)	-10	NM_015208	23253	Hs.464585	NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
2.04815-3	chr6	33256838	33257337	+	0	NA	promoter-TSS (NM_001185181).4	promoter-TSS (NM_001185181).4	217	NM_005452	9277	Hs.520063	NM_005452	ENSG00000227057	WDR46	BING4|C6orf11|FP221|UTP7	WD repeat domain 46	protein-coding
0.0392635-13	chr5	37249603	37250102	+	0	NA	promoter-TSS (NM_023073)	promoter-TSS (NM_023073)	-322	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	Hug|JBTS17|OFD6	chromosome 5 open reading frame 42	protein-coding
0.624821-17	chr6	3933239	3933738	+	0	NA	Intergenic	Intergenic	83888	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
2.82329-19	chr11	117694500	117694999	+	0	NA	intron (NM_001204268, intron 6 of 10)	intron (NM_001204268, intron 6 of 10)	710	NM_001680	486	Hs.731865	NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
15.3611-3	chr12	113736673	113737172	+	0	NA	TTS (NM_001301214)	TTS (NM_001301214)	7594	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
12.4718-6	chr6	21202095	21202594	+	0	NA	intron (NM_017774, intron 15 of 15)	intron (NM_017774, intron 15 of 15)	309779	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
0.0833099-3	chr17	27279275	27279774	+	0	NA	Intergenic	CpG	-1016	NM_001033561	57649	Hs.444173	NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
4.58421-13	chr11	126032876	126033375	+	0	NA	Intergenic	Intergenic	48462	NM_001144827	84881	Hs.150458	NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
0.486625-4	chr2	8818269	8818768	+	0	NA	intron (NR_110154, intron 1 of 3)	intron (NR_110154, intron 1 of 3)	3473	NR_110153	100506299	Hs.439031	NR_110153	ENSG00000235092	ID2-AS1	-	ID2 antisense RNA 1 (head to head)	ncRNA
2.50264-4	chr2	46163227	46163726	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	284433	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
1.21478-24	chr12	65085549	65086048	+	0	NA	intron (NR_040718, intron 3 of 3)	intron (NR_040718, intron 3 of 3)	67428	NM_002076	2799	Hs.334534	NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
0.310503-4	chr4	71571113	71571612	+	0	NA	intron (NM_001130709, intron 1 of 11)	CpG	708	NM_001130709	22902	Hs.740904	NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
7.44727-2	chrUn_gl000216	138507	139006	+	0	NA	NA	Intergenic	NA	NA								
1.26098-12	chr7	156685909	156686408	+	0	NA	promoter-TSS (NM_022458)	promoter-TSS (NM_022458)	-256	NM_022458	64327	Hs.209989	NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|ZRS	limb development membrane protein 1	protein-coding
37.7989	chr20	34474422	34474921	+	0	NA	intron (NM_016436, intron 9 of 17)	intron (NM_016436, intron 9 of 17)	67877	NM_033630	51282	Hs.584909	NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
4.32974-11	chr15	27495131	27495630	+	0	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	-88914	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
0.141246-27	chr1	183385828	183386327	+	0	NA	intron (NM_015039, intron 1 of 10)	CpG	1557	NM_015039	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
0.726296-14	chr3	186582943	186583442	+	0	NA	Intergenic	SVA_E|Other|Other	-9280	NR_046662	100874095	Hs.80485	NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
0.726296-11	chr1	185453048	185453547	+	0	NA	Intergenic	Intergenic	144323	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
0.15923-5	chr12	50232640	50233139	+	0	NA	non-coding (NR_027501, exon 3 of 3)	non-coding (NR_027501, exon 3 of 3)	4023	NM_181708	144233	Hs.142736	NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
8.72895-3	chr22	31102213	31102712	+	0	NA	intron (NM_001282739, intron 1 of 13)	intron (NM_001282739, intron 1 of 13)	11669	NM_030758	23762	Hs.517546	NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
5.52842-3	chr3	196112784	196113283	+	0	NA	intron (NM_015562, intron 5 of 10)	SVA_B|Other|Other	-45223	NR_046745	100874034	Hs.617990	NR_046745		UBXN7-AS1	-	UBXN7 antisense RNA 1	ncRNA
2.51037-17	chr21	46011209	46012334	+	0	NA	exon (NM_198688, exon 1 of 1)	exon (NM_198688, exon 1 of 1)	615	NM_198688	386674	Hs.689666	NM_198688	ENSG00000188155	KRTAP10-6	KAP10.6|KAP18.6|KRTAP18-6|KRTAP18.6	keratin associated protein 10-6	protein-coding
3.06273-12	chr4	107684171	107684670	+	0	NA	Intergenic	Intergenic	273033	NM_014421	27123	Hs.211869	NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
0.772745-7	chr12	58238872	58239371	+	0	NA	intron (NM_005730, intron 1 of 7)	CpG	1626	NM_005730	10106	Hs.524530	NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
3.27902-8	chr7	141130012	141130511	+	0	NA	intron (NM_001195278, intron 2 of 3)	MIR|SINE|MIR	-120817	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
2.32102	chr10	33269331	33269830	+	0	NA	Intergenic	CpG	-22287	NM_002211	3688	Hs.643813	NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
0.32452-13	chr10	82224685	82225184	+	0	NA	intron (NM_030927, intron 1 of 8)	intron (NM_030927, intron 1 of 8)	10896	NM_030927	81619	Hs.718943	NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
3.30683-7	chr12	96487936	96488435	+	0	NA	Intergenic	L2a|LINE|L2	-50887	NM_001256644	4048	Hs.524648	NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
1.37272-25	chr4	37832225	37832724	+	0	NA	intron (NM_018290, intron 2 of 13)	intron (NM_018290, intron 2 of 13)	4192	NM_018290	55276	Hs.23363	NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
3.75718	chr8	30892116	30892615	+	0	NA	intron (NM_000553, intron 1 of 34)	LTR56|LTR|ERV1	-1134	NM_001015508	29942	Hs.373778	NM_013357	ENSG00000172733	PURG	PURG-A|PURG-B	purine rich element binding protein G	protein-coding
19.914-2	chr1	191244758	191245257	+	0	NA	Intergenic	L1PA10|LINE|L1	650987	NR_033922	440704	Hs.518802	NR_033922	ENSG00000231175	LINC01720	-	long intergenic non-protein coding RNA 1720	ncRNA
0.609802-4	chr16	4993207	4993706	+	0	NA	Intergenic	Intergenic	-6320	NM_002705	5493	Hs.192233	NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
13.4486	chr6	90797609	90798108	+	0	NA	intron (NM_021813, intron 5 of 8)	L1MA1|LINE|L1	193670	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
1.30768-5	chr20	32109228	32109727	+	0	NA	intron (NM_001032999, intron 1 of 10)	intron (NM_001032999, intron 1 of 10)	31549	NM_001032999	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding
0.264104-12	chr9	132382239	132382738	+	0	NA	promoter-TSS (NM_001286797)	promoter-TSS (NM_001286797)	-4	NM_001286797	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
1.62412-18	chr2	235473149	235473648	+	0	NA	Intergenic	Intergenic	-67701	NM_001282431	10123	Hs.111554	NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
17.5945	chr21	47609016	47609515	+	0	NA	3' UTR (NM_001145436, exon 22 of 22)	3' UTR (NM_001145436, exon 22 of 22)	-4892	NM_032261	84221	Hs.381214	NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1-like	protein-coding
0.649968-22	chr17	75084488	75084987	+	0	NA	promoter-TSS (NR_106997)	promoter-TSS (NR_106997)	12	NR_027058	654434	Hs.720923	NR_027058	ENSG00000234912	SNHG20	C17orf86|LINC00338|NCRNA00338|SCARNA16HG	small nucleolar RNA host gene 20	ncRNA
0.680339-13	chr14	36986662	36987161	+	0	NA	exon (NM_003317, exon 2 of 2)	exon (NM_003317, exon 2 of 2)	-1572	NR_103710	100506237	Hs.94367	NR_103710	ENSG00000253563	NKX2-1-AS1	-	NKX2-1 antisense RNA 1	ncRNA
17.9048	chrX	150126554	150127053	+	0	NA	Intergenic	Intergenic	-22178	NM_001301231	3149	Hs.19114	NM_005342	ENSG00000029993	HMGB3	HMG-2a|HMG-4|HMG2A|HMG4	high mobility group box 3	protein-coding
2.23299-6	chr6	30524093	30524592	+	0	NA	promoter-TSS (NM_001077497)	promoter-TSS (NM_001077497)	-144	NM_001077497	80742	Hs.118354	NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
1.48742-4	chr1	27429982	27430481	+	0	NA	intron (NM_003047, intron 5 of 11)	MIR|SINE|MIR	51390	NR_046474	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
1.24939-3	chr22	51221837	51222658	+	0	NA	promoter-TSS (NM_001003789)	promoter-TSS (NM_001003789)	90	NR_026982	284942	Hs.406135	NM_203302		RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
2.45652-3	chr16	30582540	30583039	+	0	NA	exon (NM_145271, exon 1 of 3)	exon (NM_145271, exon 1 of 3)	939	NM_001024683	146542	Hs.301463	NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
3.72634-9	chr13	46302831	46303330	+	0	NA	Intergenic	Intergenic	26476	NM_001286342	220082	Hs.186363	NM_152719	ENSG00000174015	SPERT	CBY2|NURIT	spermatid associated	protein-coding
4.98941-5	chr10	88280920	88281419	+	0	NA	5' UTR (NM_001318328, exon 1 of 19)	5' UTR (NM_001318328, exon 1 of 19)	372	NM_015045	23063	Hs.203099	NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
0.301184-9	chr7	130791908	130792407	+	0	NA	promoter-TSS (NR_024153)	promoter-TSS (NR_024153)	-368	NR_024153	378805	Hs.150556	NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
0.213631-11	chr7	156432894	156433393	+	0	NA	promoter-TSS (NM_001308273)	promoter-TSS (NM_001308273)	205	NR_026865	129790	Hs.647014	NM_032625	ENSG00000182648	C7orf13	MY040	chromosome 7 open reading frame 13	ncRNA
4.76254-12	chr14	78990541	78991040	+	0	NA	intron (NM_004796, intron 1 of 16)	MER5B|DNA|hAT-Charlie	120716	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
2.75724-2	chr16	4850130	4850629	+	0	NA	intron (NR_046480, intron 4 of 9)	intron (NR_046480, intron 4 of 9)	2572	NR_046480	79641	Hs.459795	NM_024589	ENSG00000067836	ROGDI	KTZS	rogdi homolog	protein-coding
19.9568-7	chr5	136934100	136934599	+	0	NA	Intergenic	Intergenic	48989	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
0.545314-3	chr2	79739612	79740111	+	0	NA	promoter-TSS (NM_004389)	promoter-TSS (NM_004389)	-199	NM_001164883	1496	Hs.167368	NM_004389	ENSG00000066032	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin alpha 2	protein-coding
4.01209-11	chr17	53045182	53045681	+	0	NA	promoter-TSS (NM_178509)	promoter-TSS (NM_178509)	-695	NM_178509	252983	Hs.35199	NM_178509	ENSG00000166263	STXBP4	Synip	syntaxin binding protein 4	protein-coding
15.6384-5	chr4	183579793	183580292	+	0	NA	intron (NM_001080477, intron 6 of 27)	MLT1G3|LTR|ERVL-MaLR	258588	NM_001921	1635	Hs.183850	NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
0.172766-24	chr9	133454665	133455164	+	0	NA	promoter-TSS (NR_027440)	promoter-TSS (NR_027440)	-33	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	ncRNA
0.90444-7	chr10	112617426	112617925	+	0	NA	Intergenic	Intergenic	12987	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
7.47147-16	chr2	190624427	190624926	+	0	NA	intron (NM_022353, intron 2 of 8)	SVA_B|Other|Other	-2830	NR_102429	101409258	Hs.738558	NR_102429		OSGEPL1-AS1	-	OSGEPL1 antisense RNA 1	ncRNA
2.94992-2	chr4	157966598	157967097	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-30430	NM_001166061	2743	Hs.32973	NM_000824	ENSG00000109738	GLRB	HKPX2	glycine receptor beta	protein-coding
0.447935-2	chr11	74755587	74756086	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	44922	NM_001005285	341152	Hs.554515	NM_001005285	ENSG00000171561	OR2AT4	OR11-265	olfactory receptor family 2 subfamily AT member 4	protein-coding
1.39662-4	chr20	44958647	44959146	+	0	NA	Intergenic	Intergenic	-21759	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
11.1464	chr13	50414333	50414832	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-47525	NM_002267	3839	Hs.527919	NM_002267	ENSG00000102753	KPNA3	IPOA4|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
1.02373-13	chr1	3633869	3634368	+	0	NA	intron (NM_001126242, intron 2 of 10)	intron (NM_001126242, intron 2 of 10)	19508	NM_001204192	7161	Hs.192132	NM_005427	ENSG00000078900	TP73	P73	tumor protein p73	protein-coding
9.31814	chr12	6646942	6647441	+	0	NA	intron (NM_001256799, intron 7 of 7)	intron (NM_001256799, intron 7 of 7)	2806	NM_001256799	2597	Hs.544577	NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
0.79355-15	chr3	156446020	156446519	+	0	NA	Intergenic	Intergenic	51816	NM_001184718	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
2.26214-4	chr11	66789681	66790180	+	0	NA	promoter-TSS (NM_001177880)	promoter-TSS (NM_001177880)	-260	NM_001318773	91683	Hs.287636	NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
35.1999	chr5	32426747	32427567	+	0	NA	intron (NR_144318, intron 2 of 18)	L1M3|LINE|L1	17710	NM_016107	51663	Hs.435231	NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
4.698-6	chr15	32938417	32938916	+	0	NA	intron (NM_001144757, intron 2 of 5)	MLT1E1A|LTR|ERVL-MaLR	4852	NM_001144757	6447	Hs.156540	NM_003020	ENSG00000166922	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V	protein-coding
0.979971-4	chr20	25146688	25147187	+	0	NA	Intergenic	L1PA7|LINE|L1	-17511	NR_027091	284798	Hs.334934	NR_027091	ENSG00000230725	LOC284798	-	uncharacterized LOC284798	ncRNA
6.75718-13	chr12	30935372	30935871	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-12994	NR_040245	100287314	Hs.355210	NR_040245	ENSG00000235884	LINC00941	-	long intergenic non-protein coding RNA 941	ncRNA
13.7059-5	chr3	52049861	52050360	+	0	NA	Intergenic	Intergenic	-20152	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
8.63279-4	chr19	33165061	33165560	+	0	NA	intron (NM_032139, intron 1 of 28)	CpG	792	NM_032139	84079	Hs.59236	NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
13.4775-2	chr8	144100750	144101249	+	0	NA	intron (NM_001127213, intron 1 of 3)	intron (NM_001127213, intron 1 of 3)	1097	NM_001127213	4061	Hs.521903	NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 complex, locus E	protein-coding
2.11832-5	chr1	209800886	209801385	+	0	NA	intron (NM_001017402, intron 10 of 21)	intron (NM_001017402, intron 10 of 21)	-4280	NR_036213	100422894		NR_036213	ENSG00000196878	MIR4260	-	microRNA 4260	ncRNA
1.81774-3	chr13	60116309	60116808	+	0	NA	Intergenic	Intergenic	-470294	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
0.0174066-2	chr17	15587274	15587773	+	0	NA	Intergenic	Intergenic	-1330	NM_006470	10626	Hs.123534	NM_006470	ENSG00000221926	TRIM16	EBBP	tripartite motif containing 16	protein-coding
1.18615-6	chr1	243606454	243606953	+	0	NA	intron (NM_006642, intron 16 of 17)	intron (NM_006642, intron 16 of 17)	97225	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
0.777937-16	chr5	33441900	33442399	+	0	NA	intron (NR_047678, intron 1 of 17)	intron (NR_047678, intron 1 of 17)	1267	NM_152295	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
12.2475	chr6	168732642	168733141	+	0	NA	Intergenic	Intergenic	-12457	NM_001286351	168002	Hs.673059	NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
1.22053-31	chr9	115665375	115665874	+	0	NA	Intergenic	Intergenic	-12431	NM_033051	57864	Hs.512668	NM_033051	ENSG00000119457	SLC46A2	Ly110|TSCOT	solute carrier family 46 member 2	protein-coding
0.0130484-58	chr7	56150913	56151412	+	0	NA	intron (NR_047689, intron 4 of 8)	intron (NR_047689, intron 4 of 8)	9527	NM_001258459	5260	Hs.730821	NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
11.3018-2	chr13	100355062	100355561	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	-12086	NR_046526	100874063	Hs.577064	NR_046526	ENSG00000227659	CLYBL-AS2	-	CLYBL antisense RNA 2	ncRNA
0.181814-8	chr18	8347997	8348496	+	0	NA	intron (NM_001105244, intron 23 of 32)	intron (NM_001105244, intron 23 of 32)	18786	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
2.01349-3	chr2	242295604	242296103	+	0	NA	intron (NM_014808, intron 1 of 26)	CpG	189	NM_014808	9855	Hs.726316	NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
8.26814-11	chr6	41041047	41041546	+	0	NA	promoter-TSS (NM_001329685)	promoter-TSS (NM_001329685)	589	NM_021705	4800	Hs.10441	NM_002505	ENSG00000001167	NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y subunit alpha	protein-coding
12.7246-4	chr18	31416494	31416993	+	0	NA	Intergenic	MER72|LTR|ERV1	211833	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
9.17215-2	chr17	55554448	55554947	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	46261	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
0.655015-7	chr12	132568370	132568869	+	0	NA	promoter-TSS (NR_003290)	promoter-TSS (NR_003290)	-209	NR_003290	347918	Hs.122115	NM_182613	ENSG00000185684	EP400NL	-	EP400 N-terminal like	pseudo
7.87812-7	chr9	34990084	34990583	+	0	NA	promoter-TSS (NR_109756)	promoter-TSS (NR_109756)	66	NM_001135005	25822	Hs.237506	NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
0.218195-13	chr2	215095143	215095642	+	0	NA	intron (NR_047660, intron 14 of 14)	intron (NR_047660, intron 14 of 14)	-180900	NM_001080500	402117	Hs.534834	NM_001080500	ENSG00000174453	VWC2L	-	von Willebrand factor C domain containing protein 2-like	protein-coding
2.15383-6	chr2	165921160	165921659	+	0	NA	Intergenic	AluJb|SINE|Alu	-109374	NM_001199148	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
0.419142-39	chrX	38186593	38187092	+	0	NA	promoter-TSS (NM_000328)	promoter-TSS (NM_000328)	-54	NM_000328	6103	Hs.61438	NM_000328	ENSG00000156313	RPGR	COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15	retinitis pigmentosa GTPase regulator	protein-coding
0.888424-32	chr20	29607978	29608477	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3652	NR_003579	284802	Hs.653099	NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
1.73277-11	chr11	104034069	104034568	+	0	NA	intron (NM_025208, intron 1 of 6)	intron (NM_025208, intron 1 of 6)	709	NM_033135	80310	Hs.352298	NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
12.2403-3	chr3	114611238	114611737	+	0	NA	intron (NM_001164343, intron 3 of 11)	intron (NM_001164343, intron 3 of 11)	7982	NR_121662	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
12.233-2	chr14	59758886	59759385	+	0	NA	intron (NM_014992, intron 2 of 24)	intron (NM_014992, intron 2 of 24)	28976	NM_014992	23002	Hs.19156	NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
2.49492-9	chr15	76013317	76013816	+	0	NA	Intergenic	Intergenic	-2753	NM_175881	161753	Hs.144348	NM_175881	ENSG00000182950	ODF3L1	-	outer dense fiber of sperm tails 3 like 1	protein-coding
6.17983-11	chr6	71665493	71665992	+	0	NA	exon (NM_080742, exon 1 of 4)	exon (NM_080742, exon 1 of 4)	1046	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
0.070049-75	chr15	64756741	64757240	+	0	NA	Intergenic	Intergenic	-34629	NM_015042	23060	Hs.595451	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
10.1144	chr2	54725078	54725577	+	0	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-31032	NR_002229	56969	Hs.657366	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
1.22053-16	chr6	89970102	89970601	+	0	NA	intron (NM_002043, intron 8 of 8)	MER5A|DNA|hAT-Charlie	-29344	NM_001267582	2569	Hs.99927	NM_002042	ENSG00000146276	GABRR1	-	gamma-aminobutyric acid type A receptor rho1 subunit	protein-coding
0.218195-15	chr1	74892019	74892518	+	0	NA	intron (NM_015978, intron 17 of 24)	intron (NM_015978, intron 17 of 24)	-150846	NR_121671	101927320	Hs.662589	NR_121670	ENSG00000234497	ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
1.93142-4	chr8	12612962	12613461	+	0	NA	promoter-TSS (NM_001329976)	promoter-TSS (NM_001329976)	-260	NM_152271	91694	Hs.180178	NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
11.8842-3	chr18	59561391	59561890	+	0	NA	Intergenic	CpG	-1336	NM_173557	220441	Hs.165062	NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
16.038-5	chr1	59680417	59680916	+	0	NA	Intergenic	Intergenic	-68187	NR_027120	729467	Hs.662291	NR_027120	ENSG00000224609	HSD52	-	uncharacterized LOC729467	ncRNA
0.798767-34	chr1	117498924	117499423	+	0	NA	intron (NM_020440, intron 4 of 8)	intron (NM_020440, intron 4 of 8)	-45199	NM_004258	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
1.50581-29	chr7	13218538	13219037	+	0	NA	Intergenic	Intergenic	491876	NM_005738	10124	Hs.245540	NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
0.296531-129	chr9_gl000199_random	144621	145120	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.204516-10	chr8	599639	600138	+	0	NA	intron (NM_001303100, intron 5 of 5)	intron (NM_001303100, intron 5 of 5)	81351	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
0.48177-38	chr6	100315891	100316390	+	0	NA	Intergenic	Intergenic	-125774	NR_038384	728012	Hs.434366	NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
0.560111-17	chr2	88991183	88991682	+	0	NA	exon (NM_144563, exon 1 of 9)	exon (NM_144563, exon 1 of 9)	256	NM_144563	22934	Hs.469264	NM_144563	ENSG00000153574	RPIA	RPI|RPIAD	ribose 5-phosphate isomerase A	protein-coding
1.19186-30	chr14	58894340	58895292	+	0	NA	promoter-TSS (NR_130751)	promoter-TSS (NR_130751)	422	NM_001329944	9786	Hs.232532	NM_014749	ENSG00000100578	KIAA0586	JBTS23|SRTD14|Talpid3	KIAA0586	protein-coding
0.0877392-41	chr8	30601467	30601966	+	0	NA	promoter-TSS (NM_001282189)	promoter-TSS (NM_001282189)	34	NM_001282189	7993	Hs.153678	NM_005671	ENSG00000104691	UBXN8	D8S2298E|REP8|UBXD6	UBX domain protein 8	protein-coding
5.31653-6	chr6	150638640	150639139	+	0	NA	Intergenic	Intergenic	-51139	NM_001164695	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
9.24453-6	chr16	66684569	66685068	+	0	NA	intron (NM_178818, intron 1 of 4)	intron (NM_178818, intron 1 of 4)	45792	NM_181521	146223	Hs.643961	NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
11.9044-7	chr2	3005331	3005830	+	0	NA	intron (NR_110228, intron 3 of 6)	intron (NR_110228, intron 3 of 6)	124218	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
15.7675-5	chr7	39307966	39308465	+	0	NA	intron (NM_001166018, intron 5 of 10)	MER20B|DNA|hAT-Charlie	137730	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
22.2548-4	chr20	16644160	16644659	+	0	NA	Intergenic	Intergenic	-66200	NM_198220	6629	Hs.280378	NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
1.41463-11	chr19	54970561	54971060	+	0	NA	intron (NM_052925, intron 15 of 15)	intron (NM_052925, intron 15 of 15)	4084	NM_198988	94059	Hs.590976	NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
0.254883-59	chr2	55402666	55403165	+	0	NA	3' UTR (NM_152385, exon 13 of 13)	3' UTR (NM_152385, exon 13 of 13)	-37948	NM_001321904	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
22.2841-2	chr7	98865816	98866315	+	0	NA	Intergenic	Intergenic	-4859	NR_002147	84176	Hs.621401	NR_002147		MYH16	MHC20|MYH16P|MYH5	myosin heavy chain 16 pseudogene	pseudo
5.96879-7	chr16	3036009	3036839	+	0	NA	Intergenic	MIR|SINE|MIR	-2631	NR_033861	283875	Hs.620489	NR_033861		LINC00514	LA16c-380H5.1	long intergenic non-protein coding RNA 514	ncRNA
0.123337-13	chrX	40035003	40035502	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	1330	NM_001123383	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
2.1254-11	chr3	135968980	135969479	+	0	NA	promoter-TSS (NM_001178014)	promoter-TSS (NM_001178014)	62	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase beta subunit	protein-coding
0.91515-13	chr14	53161665	53162164	+	0	NA	intron (NM_014584, intron 1 of 15)	CpG	735	NM_014584	30001	Hs.525339	NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
2.62807-5	chr6	139695758	139696257	+	0	NA	promoter-TSS (NM_006079)	promoter-TSS (NM_006079)	-220	NM_006079	10370	Hs.82071	NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
2.53366-5	chr12	94178072	94178571	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-46722	NR_110093	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA
2.04815-2	chr6	2886190	2886689	+	0	NA	intron (NR_110841, intron 2 of 4)	MSTB1|LTR|ERVL-MaLR	2217	NR_110841	101927730	Hs.104879	NR_110841		LOC101927730	-	uncharacterized LOC101927730	ncRNA
0.867161-5	chr12	1702318	1702817	+	0	NA	exon (NM_152441, exon 1 of 2)	exon (NM_152441, exon 1 of 2)	764	NM_152441	144699	Hs.367956	NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
1.43876-7	chr7	47962455	47962954	+	0	NA	intron (NM_138295, intron 7 of 56)	SVA_B|Other|Other	25367	NM_138295	168507	Hs.195979	NM_138295	ENSG00000158683	PKD1L1	HTX8|PRO19563	polycystin 1 like 1, transient receptor potential channel interacting	protein-coding
0.51587-22	chr11	66095719	66096218	+	0	NA	Intergenic	Intergenic	8032	NM_004292	9610	Hs.1030	NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
19.4692-11	chr12	5485929	5486428	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-55102	NM_001102654	4908	Hs.99171	NM_002527	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
20.5208-2	chr12	52844876	52845375	+	0	NA	intron (NM_005555, intron 1 of 8)	intron (NM_005555, intron 1 of 8)	785	NM_005555	3854	Hs.708950	NM_005555	ENSG00000185479	KRT6B	CK-6B|CK6B|K6B|KRTL1|PC2|PC4	keratin 6B	protein-coding
5.95166-12	chr11	76292911	76293410	+	0	NA	Intergenic	SVA_C|Other|Other	87884	NM_005512	2615	Hs.151641	NM_005512	ENSG00000137507	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
11.9791-4	chr1	230999190	230999689	+	0	NA	intron (NM_001136494, intron 3 of 5)	intron (NM_001136494, intron 3 of 5)	4863	NM_032800	84886	Hs.520494	NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
1.10698-9	chr12	51157976	51158475	+	0	NA	intron (NM_005171, intron 1 of 6)	CpG	436	NM_005171	466	Hs.648565	NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
2.99296-4	chr6	17600989	17601488	+	0	NA	exon (NM_016255, exon 1 of 5)	exon (NM_016255, exon 1 of 5)	720	NM_016255	51439	Hs.95260	NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
0.329203-13	chr7	105028971	105029470	+	0	NA	intron (NM_182692, intron 1 of 15)	CpG-24777	157	NM_182692	6733	Hs.285197	NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
0.80399-11	chr13	107026052	107026551	+	0	NA	Intergenic	Intergenic	-2610	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
3.71611	chr12	6715135	6715634	+	0	NA	intron (NM_001273, intron 2 of 39)	intron (NM_001273, intron 2 of 39)	233	NM_001297553	1108	Hs.162233	NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
4.50997-2	chr14	77413464	77413963	+	0	NA	Intergenic	Intergenic	-12268	NR_133913	105370578	Hs.574184	NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
1.09579-13	chr2	205410170	205410669	+	0	NA	promoter-TSS (NM_001302769)	promoter-TSS (NM_001302769)	-97	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
0.00869459-3	chr4	41131287	41131786	+	0	NA	intron (NM_001166050, intron 2 of 17)	intron (NM_001166050, intron 2 of 17)	85099	NM_173075	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
6.7162-7	chr17	63410066	63410565	+	0	NA	Intergenic	Intergenic	-43344	NR_131984	105827617		NR_131984	ENSG00000263520	CRAT40	-	cervical cancer-associated transcript 40	ncRNA
89.431	chr5	45643030	45643529	+	0	NA	intron (NM_021072, intron 2 of 7)	intron (NM_021072, intron 2 of 7)	52941	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
2.36572-13	chr3	168961837	168962336	+	0	NA	intron (NM_001205194, intron 1 of 15)	intron (NM_001205194, intron 1 of 15)	-96564	NM_001164000	2122	Hs.744090	NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
0.186345-2	chr7	80354365	80354864	+	0	NA	Intergenic	Intergenic	78645	NM_001289908	948	Hs.120949	NM_000072	ENSG00000135218	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule	protein-coding
11.6052	chr9	81825809	81826308	+	0	NA	Intergenic	Intergenic	-65477	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
1.84422-6	chr1	27339426	27339925	+	0	NA	promoter-TSS (NM_052943)	promoter-TSS (NM_052943)	-342	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	-	family with sequence similarity 46 member B	protein-coding
0.154727-13	chr8	57114768	57115267	+	0	NA	intron (NM_002655, intron 1 of 4)	intron (NM_002655, intron 1 of 4)	8842	NM_001114635	5324	Hs.14968	NM_002655	ENSG00000181690	PLAG1	PSA|SGPA|ZNF912	PLAG1 zinc finger	protein-coding
2.82329-20	chr1	182573355	182573854	+	0	NA	promoter-TSS (NM_002928)	promoter-TSS (NM_002928)	-56	NM_002928	6004	Hs.413297	NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G-protein signaling 16	protein-coding
6.34512-3	chr2	139502330	139502829	+	0	NA	intron (NM_007226, intron 1 of 1)	intron (NM_007226, intron 1 of 1)	35232	NM_007226	11249	Hs.435019	NM_007226	ENSG00000144227	NXPH2	NPH2	neurexophilin 2	protein-coding
0.245682-33	chr19	10764463	10764962	+	0	NA	promoter-TSS (NM_001137673)	promoter-TSS (NM_001137673)	-164	NR_024333	147727	Hs.631616	NR_024333	ENSG00000267100	ILF3-AS1	-	ILF3 antisense RNA 1 (head to head)	ncRNA
6.05548-3	chr11	46917869	46918368	+	0	NA	intron (NM_002334, intron 8 of 37)	intron (NM_002334, intron 8 of 37)	22055	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
11.343	chr19	58790471	58790970	+	0	NA	non-coding (NR_144447, exon 1 of 7)	non-coding (NR_144447, exon 1 of 7)	388	NR_144447	108903150		NR_144447		ZNF8-ERVK3-1	-	ZNF8-ERVK3-1 readthrough	ncRNA
1.59894-12	chr10	120514346	120514845	+	0	NA	5' UTR (NM_153810, exon 1 of 9)	5' UTR (NM_153810, exon 1 of 9)	163	NM_153810	143384	Hs.420024	NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
3.85103-5	chr12	27174194	27174693	+	0	NA	Intergenic	Intergenic	-1012	NM_001271811	9412	Hs.286145	NM_004264	ENSG00000152944	MED21	SRB7|SURB7|hSrb7	mediator complex subunit 21	protein-coding
2.18245-8	chr11	19387471	19387970	+	0	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	15449	NM_001111018	89797	Hs.64341	NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
9.87163-25	chr20	55432932	55433431	+	0	NA	Intergenic	Intergenic	228823	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma	protein-coding
0.783135-32	chr17	47647279	47647778	+	0	NA	intron (NR_103773, intron 1 of 2)	CpG	3898	NR_103773	100288866	Hs.720309	NR_103773	ENSG00000249906	LOC100288866	-	uncharacterized LOC100288866	ncRNA
5.05845-19	chr9	7799172	7799671	+	0	NA	intron (NM_001318059, intron 1 of 1)	CpG	385	NM_001318059	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
2.35824-16	chr2	173330245	173330744	+	0	NA	intron (NM_001079818, intron 2 of 24)	intron (NM_001079818, intron 2 of 24)	38211	NM_001079818	3655	Hs.133397	NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6B|VLA-6	integrin subunit alpha 6	protein-coding
2.72459-2	chr10	65388336	65388835	+	0	NA	Intergenic	Intergenic	-106750	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
1.0902-4	chr10	74648997	74649496	+	0	NA	Intergenic	L1MB3|LINE|L1	-4068	NM_152635	170392	Hs.8366	NM_152635	ENSG00000138315	OIT3	LZP	oncoprotein induced transcript 3	protein-coding
4.22508-3	chr1	72746745	72747244	+	0	NA	intron (NM_173808, intron 1 of 6)	intron (NM_173808, intron 1 of 6)	1283	NM_173808	257194	Hs.146542	NM_173808	ENSG00000172260	NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
0.118872-55	chr1	7209024	7209523	+	0	NA	intron (NM_015215, intron 4 of 22)	intron (NM_015215, intron 4 of 22)	363889	NM_001195563	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
0.0877392-25	chr18	56620828	56621327	+	0	NA	intron (NM_001318726, intron 7 of 9)	MIRc|SINE|MIR	-81834	NR_024021	390858	Hs.716280	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
0.409586-3	chr15	101849877	101850376	+	0	NA	promoter-TSS (NR_045387)	promoter-TSS (NR_045387)	-617	NR_045387	100507472	Hs.498494	NR_045387		LOC100507472	-	uncharacterized LOC100507472	ncRNA
0.545314-14	chr11	62538773	62539272	+	0	NA	intron (NM_006473, intron 1 of 10)	CpG	247	NM_006473	10629	Hs.714400	NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
5.85027-9	chr6	124762606	124763105	+	0	NA	intron (NM_001300738, intron 4 of 7)	MLT1G1|LTR|ERVL-MaLR	158704	NM_001300740	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
1.53663-45	chr21	39727826	39728325	+	0	NA	Intergenic	Intergenic	-10077	NR_110545	102724678	Hs.635675	NR_110545		LINC01423	-	long intergenic non-protein coding RNA 1423	ncRNA
2.96709-22	chr16	413038	413537	+	0	NA	Intergenic	Intergenic	7282	NM_006428	10573	Hs.513230	NM_006428	ENSG00000086504	MRPL28	MAAT1|p15	mitochondrial ribosomal protein L28	protein-coding
1.79799-6	chr1	161499944	161500443	+	0	NA	Intergenic	tRNA-Leu-CTG|tRNA|tRNA	5863	NM_002155	3310	Hs.654614	NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
0.0392635-2	chr8	55294741	55295240	+	0	NA	Intergenic	Intergenic	-75505	NM_022454	64321	Hs.98367	NM_022454	ENSG00000164736	SOX17	VUR3	SRY-box 17	protein-coding
3.85103-7	chr3	160113059	160113558	+	0	NA	intron (NM_020800, intron 1 of 19)	MLT1K|LTR|ERVL-MaLR	-3784	NM_001288753	10051	Hs.58992	NM_005496	ENSG00000113810	SMC4	CAP-C|CAPC|SMC-4|SMC4L1	structural maintenance of chromosomes 4	protein-coding
12.2988	chr3	159493133	159493632	+	0	NA	intron (NM_001197113, intron 5 of 10)	intron (NM_001197113, intron 5 of 10)	-6981	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
15.391	chr2	241885375	241885874	+	0	NA	Intergenic	Intergenic	21244	NR_033841	200772	Hs.647893	NR_033841	ENSG00000233392	LOC200772	-	uncharacterized LOC200772	ncRNA
15.2871	chr6	96827170	96827669	+	0	NA	Intergenic	Intergenic	-142283	NM_015323	23376	Hs.149367	NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
0.746879-6	chr12	122582769	122583268	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	66384	NM_014938	22877	Hs.437153	NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
0.741724-2	chr12	114195006	114195505	+	0	NA	intron (NR_110025, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	16233	NR_110025	100506465	Hs.211461	NR_110025	ENSG00000249550	LINC01234	LCAL84|onco-lncRNA-32	long intergenic non-protein coding RNA 1234	ncRNA
0.452752-3	chr7	100270943	100271442	+	0	NA	promoter-TSS (NM_005273)	promoter-TSS (NM_005273)	-171	NM_005273	2783	Hs.185172	NM_005273	ENSG00000172354	GNB2	-	G protein subunit beta 2	protein-coding
10.6148	chr1	43428580	43429079	+	0	NA	intron (NR_033967, intron 1 of 3)	intron (NR_033967, intron 1 of 3)	-3982	NM_006516	6513	Hs.473721	NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
14.7756	chr5	37518751	37519250	+	0	NA	intron (NM_001345998, intron 9 of 17)	SVA_A|Other|Other	139638	NM_001345999	55100	Hs.213690	NM_018034	ENSG00000082068	WDR70	-	WD repeat domain 70	protein-coding
2.41088-5	chr11	57117184	57117683	+	0	NA	intron (NM_002559, intron 7 of 11)	CpG	11592	NM_002559	5024	Hs.146738	NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
1.9044-2	chr20	42875623	42876122	+	0	NA	promoter-TSS (NM_001256739)	promoter-TSS (NM_001256739)	-26	NM_001256737	78997	Hs.517059	NM_024034	ENSG00000124194	GDAP1L1	dJ881L22.1|dJ995J12.1.1	ganglioside induced differentiation associated protein 1 like 1	protein-coding
12.7409-2	chr2	1594432	1594931	+	0	NA	Intergenic	Intergenic	153638	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
6.16185-11	chr10	12524461	12524960	+	0	NA	intron (NM_020397, intron 1 of 9)	intron (NM_020397, intron 1 of 9)	-96042	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
1.02923-14	chr5	37890014	37890513	+	0	NA	Intergenic	Intergenic	16736	NM_001278094	100861519	Hs.536820	NM_001278094	ENSG00000248587	GDNF-AS1	GDNFOS	GDNF antisense RNA 1 (head to head)	protein-coding
7.54487-11	chr16	231246	231745	+	0	NA	TTS (NM_005331)	TTS (NM_005331)	1162	NM_005331	3049	Hs.247921	NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
13.7263	chr4	115650399	115650898	+	0	NA	Intergenic	Intergenic	72733	NR_030303	693162		NR_030303	ENSG00000207931	MIR577	MIRN577|hsa-mir-577|mir-577	microRNA 577	ncRNA
20.5948-2	chr1	40282921	40283420	+	0	NA	Intergenic	Intergenic	28522	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
0.376307-8	chr15	52311673	52312172	+	0	NA	intron (NM_002748, intron 1 of 5)	CpG	511	NM_002748	5597	Hs.411847	NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
0.132283-11	chr14	88156665	88157164	+	0	NA	Intergenic	Intergenic	302701	NM_000153	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
1.17475-21	chr15	25683246	25683745	+	0	NA	intron (NM_000462, intron 1 of 13)	CpG	680	NM_000462	7337	Hs.598862	NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
1.72631-13	chr2	211035148	211035647	+	0	NA	intron (NM_152519, intron 1 of 14)	intron (NM_152519, intron 1 of 14)	697	NM_152519	151050	Hs.282260	NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
1.22053-4	chr8	128786623	128787122	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-19907	NR_003367	5820	Hs.133107	NR_003367	ENSG00000249859	PVT1	LINC00079|MYC|NCRNA00079|onco-lncRNA-100	Pvt1 oncogene (non-protein coding)	ncRNA
11.7457-4	chr20	49001801	49002300	+	0	NA	Intergenic	Intergenic	-64171	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
0.520764-16	chr9	81635200	81635699	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	125132	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
0.639892-17	chr20	44512258	44512757	+	0	NA	exon (NM_080603, exon 2 of 2)	exon (NM_080603, exon 2 of 2)	2659	NM_080603	90204	Hs.517075	NM_080603	ENSG00000168612	ZSWIM1	C20orf162	zinc finger SWIM-type containing 1	protein-coding
2.27678-5	chr6	170604093	170604592	+	0	NA	promoter-TSS (NM_001286380)	promoter-TSS (NM_001286380)	-67	NM_001286380	84498	Hs.369522	NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|dJ894D12.1	family with sequence similarity 120B	protein-coding
6.92504	chr5	147136067	147136566	+	0	NA	intron (NM_001270941, intron 1 of 21)	intron (NM_001270941, intron 1 of 21)	26095	NM_001282282	9832	Hs.740461	NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
1.20904-2	chr20	35629639	35630138	+	0	NA	intron (NM_001323282, intron 21 of 21)	SVA_D|Other|Other	-49642	NM_015474	25939	Hs.580681	NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
2.88193-15	chr4	109541390	109541889	+	0	NA	promoter-TSS (NM_001319236)	promoter-TSS (NM_001319236)	-26	NR_026968	285456	Hs.683863	NM_182591	ENSG00000234492	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	ncRNA
4.89455-3	chr4	72149224	72149723	+	0	NA	intron (NM_001134742, intron 3 of 24)	intron (NM_001134742, intron 3 of 24)	-55297	NM_003759	8671	Hs.5462	NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
6.38272-7	chr16	67880783	67881282	+	0	NA	promoter-TSS (NM_001322040)	promoter-TSS (NM_001322040)	15	NM_001322041	10204	Hs.356630	NM_005796	ENSG00000102898	NUTF2	NTF-2|NTF2|PP15	nuclear transport factor 2	protein-coding
1.03474-18	chr9	96717607	96718106	+	0	NA	promoter-TSS (NM_021570)	promoter-TSS (NM_021570)	-248	NM_021570	56033	Hs.164960	NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
3.66532-4	chr7	50528242	50528741	+	0	NA	intron (NM_001082971, intron 14 of 14)	SVA_D|Other|Other	-10387	NM_001287494	63979	Hs.137516	NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
1.30768-14	chr2	111140918	111141417	+	0	NA	non-coding (NR_046110, exon 2 of 4).2	non-coding (NR_046110, exon 2 of 4).2	935	NR_046110	440894	Hs.516403	NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
10.8938-2	chr6	75303840	75304339	+	0	NA	intron (NR_110856, intron 2 of 3)	intron (NR_110856, intron 2 of 3)	524922	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
0.168249-11	chr8	19171692	19172191	+	0	NA	intron (NM_001174159, intron 1 of 9)	CpG	454	NM_001174159	63898	Hs.303208	NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
0.443122-9	chr7	48029196	48029695	+	0	NA	intron (NM_152782, intron 9 of 10)	LTR5_Hs|LTR|ERVK	-10223	NM_004507	3364	Hs.152983	NM_004507	ENSG00000136273	HUS1	hHUS1	HUS1 checkpoint clamp component	protein-coding
10.0087-2	chr2	27711915	27712414	+	0	NA	intron (NM_015662, intron 1 of 47)	intron (NM_015662, intron 1 of 47)	514	NM_015662	26160	Hs.127401	NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
1.81774-16	chr11	33037181	33037680	+	0	NA	promoter-TSS (NM_001077242)	promoter-TSS (NM_001077242)	20	NM_001077242	91614	Hs.280990	NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
0.136762-10	chr1	153413908	153414407	+	0	NA	Intergenic	Intergenic	-1654	NM_001045479	645922	Hs.647713	NM_001045479	ENSG00000197364	S100A7L2	S100a7b	S100 calcium binding protein A7 like 2	protein-coding
10.7007	chr2	121321931	121322430	+	0	NA	Intergenic	Intergenic	-98255	NR_027181	84931	Hs.334519	NM_032845	ENSG00000280409	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
2.09715-2	chr11	64084266	64084765	+	0	NA	TTS (NM_004451)	TTS (NM_004451)	1041	NM_001286084	51504	Hs.333579	NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase 11-2 homolog (S. cerevisiae)	protein-coding
5.37602-10	chr5	27770702	27771201	+	0	NA	Intergenic	Intergenic	298552	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
3.8405-20	chr7	22232591	22233090	+	0	NA	intron (NM_012294, intron 11 of 25)	intron (NM_012294, intron 11 of 25)	163693	NM_012294	9771	Hs.174768	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
2.23299-5	chr6	40440000	40440499	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	94086	NR_024015	732253	Hs.180197	NR_024015	ENSG00000204091	TDRG1	LINC00532	testis development related 1 (non-protein coding)	ncRNA
3.85103-29	chr4	83933945	83934444	+	0	NA	promoter-TSS (NM_001115007)	promoter-TSS (NM_001115007)	-100	NM_001115007	132660	Hs.96952	NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
0.301184-24	chr6	99961816	99962315	+	0	NA	5' UTR (NM_001346021, exon 1 of 18)	5' UTR (NM_001346021, exon 1 of 18)	1187	NM_001346021	85015	Hs.143410	NM_032929	ENSG00000123552	USP45	-	ubiquitin specific peptidase 45	protein-coding
0.0436481-34	chr15	80695984	80696483	+	0	NA	promoter-TSS (NM_014862)	promoter-TSS (NM_014862)	-459	NM_014862	9915	Hs.459070	NM_014862	ENSG00000172379	ARNT2	WEDAS|bHLHe1	aryl hydrocarbon receptor nuclear translocator 2	protein-coding
1.20904-6	chr17	1467216	1467715	+	0	NA	Intergenic	L2c|LINE|L2	-1355	NM_006224	5306	Hs.429819	NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
4.02305-8	chr1	40280800	40281299	+	0	NA	Intergenic	AluJb|SINE|Alu	26401	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
5.55955-8	chr13	94876043	94876542	+	0	NA	intron (NM_005708, intron 4 of 8)	MER82|DNA|TcMar-Tigger	-36047	NR_046535	100873972	Hs.670344	NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
0.589858-14	chr13	110470444	110470943	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-31779	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
4.15669-9	chr9	13278273	13278772	+	0	NA	intron (NM_001330637, intron 1 of 46)	CpG	1041	NM_003829	8777	Hs.169378	NM_003829	ENSG00000107186	MPDZ	HYC2|MUPP1	multiple PDZ domain crumbs cell polarity complex component	protein-coding
2.03426	chr2	7935818	7936317	+	0	NA	Intergenic	Intergenic	103719	NR_110256	101929551	Hs.116006	NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
4.76254	chr22	49221099	49221598	+	0	NA	Intergenic	Intergenic	-41234	NR_038944	100128946	Hs.535676	NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
1.38466-2	chr2	127863842	127864341	+	0	NA	intron (NM_139351, intron 1 of 12)	CpG	812	NM_139349	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
8.50781-4	chr8	71000582	71001081	+	0	NA	Intergenic	LTR41|LTR|ERVL	-17269	NM_024504	63978	Hs.736037	NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
0.123337-50	chr2	192109936	192110435	+	0	NA	5' UTR (NM_012223, exon 1 of 29)	5' UTR (NM_012223, exon 1 of 29)	183	NM_001130158	4430	Hs.439620	NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
6.65546-6	chr6	52255082	52255581	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	28405	NM_133367	85315	Hs.239388	NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
1.41463-10	chr12	1947681	1948180	+	0	NA	intron (NM_172364, intron 26 of 37)	intron (NM_172364, intron 26 of 37)	18497	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
0.649968-32	chr6	12749995	12750494	+	0	NA	intron (NM_001322310, intron 2 of 13)	CpG	31313	NM_001322310	221692	Hs.436996	NM_030948	ENSG00000112137	PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
0.731433-9	chr15	93180099	93180598	+	0	NA	intron (NM_207446, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	18683	NM_207446	400451	Hs.27373	NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding
1.02373-22	chr15	22893448	22893947	+	0	NA	intron (NM_001324125, intron 1 of 27)	CpG	1070	NM_001324123	23191	Hs.26704	NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
8.12479-2	chr3	4534713	4535212	+	0	NA	promoter-TSS (NM_001168272)	promoter-TSS (NM_001168272)	-70	NM_001168272	3708	Hs.567295	NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
4.97573-7	chr2	49165309	49165808	+	0	NA	Intergenic	Intergenic	-121184	NR_107011	102465854		NR_107011	ENSG00000212036	MIR548BA	hsa-mir-548ba	microRNA 548ba	ncRNA
0.347983	chr10	80826115	80826614	+	0	NA	intron (NR_024431, intron 1 of 9)	intron (NR_024431, intron 1 of 9)	841	NR_015429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
8.06875-12	chr3	182986138	182986637	+	0	NA	intron (NM_032047, intron 1 of 1)	intron (NM_032047, intron 1 of 1)	15355	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
0.0877392-38	chr6	154993117	154993616	+	0	NA	Intergenic	Intergenic	-61146	NM_001286189	22828	Hs.591329	NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
1.7134-11	chr6	17311683	17312182	+	0	NA	Intergenic	Intergenic	29000	NM_153020	221662	Hs.519904	NM_153020	ENSG00000112183	RBM24	RNPC6|dJ259A10.1	RNA binding motif protein 24	protein-coding
0.491485-3	chr12	53886689	53887188	+	0	NA	intron (NM_006301, intron 1 of 14)	CpG	6506	NM_001193511	7786	Hs.713539	NM_006301	ENSG00000139625	MAP3K12	DLK|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
0.118872-14	chr10	112403710	112404209	+	0	NA	promoter-TSS (NM_001134363)	promoter-TSS (NM_001134363)	-196	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
1.51195-16	chr3	10289828	10290327	+	0	NA	promoter-TSS (NM_014760)	promoter-TSS (NM_014760)	-100	NM_014760	9797	Hs.475401	NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
1.56145-5	chr22	19104602	19105101	+	0	NA	intron (NM_005137, intron 1 of 9)	intron (NM_005137, intron 1 of 9)	5116	NR_033674	9993	Hs.517357	NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
3.08035-8	chr19	13182523	13183022	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	31202	NM_005583	4066	Hs.46446	NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1, basic helix-loop-helix family member	protein-coding
4.74955-3	chrUn_gl000224	10295	10794	+	0	NA	Intergenic	Intergenic	-91959	NR_135481	100505874	Hs.559790	NR_135481		LOC100505874	-	uncharacterized LOC100505874	ncRNA
10.3433	chr1	220695963	220696462	+	0	NA	Intergenic	Intergenic	-5313	NM_001286124	4139	Hs.497806	NM_018650	ENSG00000116141	MARK1	MARK|Par-1c|Par1c	microtubule affinity regulating kinase 1	protein-coding
1.79142-5	chr18	68487113	68487612	+	0	NA	Intergenic	L1MA5A|LINE|L1	-169269	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding
33.7779-2	chr4	165911635	165912134	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13066	NM_001012414	391712	Hs.654633	NM_001012414	ENSG00000183439	TRIM61	RNF35	tripartite motif containing 61	protein-coding
0.385789-30	chr5	138473268	138473767	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	60548	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
3.18759-8	chr18	8706952	8707451	+	0	NA	non-coding (NR_120598, exon 1 of 2)	non-coding (NR_120598, exon 1 of 2)	418	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1|MTCL1AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
8.21023-6	chr1	116907929	116908428	+	0	NA	Intergenic	Intergenic	-7617	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
1.73925-8	chr17	30813295	30813794	+	0	NA	promoter-TSS (NM_003885)	promoter-TSS (NM_003885)	-561	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
0.846002-2	chr3	120136307	120136806	+	0	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	-21980	NR_029584	406975		NR_029584	ENSG00000163430	MIR198	MIRN198|miR-198	microRNA 198	ncRNA
0.385789-43	chr14	102729341	102729840	+	0	NA	intron (NM_001330234, intron 4 of 11)	intron (NM_001330234, intron 4 of 11)	-22632	NR_073540	5891	Hs.104119	NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
0.190881-13	chr1	200639397	200640023	+	0	NA	promoter-TSS (NM_001320181)	promoter-TSS (NM_001320181)	-584	NM_001320181	83479	Hs.497332	NM_031306	ENSG00000118197	DDX59	OFD5|ZNHIT5	DEAD-box helicase 59	protein-coding
0.819697	chr4	124318367	124318866	+	0	NA	promoter-TSS (NM_001258039)	promoter-TSS (NM_001258039)	666	NM_001258038	10252	Hs.744854	NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
12.3807	chr3	107819750	107820249	+	0	NA	Intergenic	Intergenic	-10064	NM_198793	961	Hs.446414	NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
0.070049-10	chr2	20265964	20266463	+	0	NA	Intergenic	Intergenic	-14424	NM_014713	9741	Hs.467807	NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
16.7162	chr1	111299038	111299537	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-81632	NM_002232	3738	Hs.169948	NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
5.68636-3	chr1	231663834	231664662	+	0	NA	promoter-TSS (NM_005999)	promoter-TSS (NM_005999)	-151	NR_028398	100303453	Hs.13318	NR_028393	ENSG00000270106	TSNAX-DISC1	-	TSNAX-DISC1 readthrough (NMD candidate)	ncRNA
0.00434512-44	chr11	75304299	75304798	+	0	NA	intron (NM_033063, intron 3 of 3)	intron (NM_033063, intron 3 of 3)	31447	NM_001207014	871	Hs.596449	NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
11.9586	chr2	84528680	84529179	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	11123	NR_003663	388965	Hs.664098	NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
1.07349-5	chr22	50427740	50428239	+	0	NA	Intergenic	SVA_A|Other|Other	23066	NM_001001694	400935	Hs.526712	NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
1.42065-8	chr5	77071980	77072479	+	0	NA	promoter-TSS (NM_001297738)	promoter-TSS (NM_001297738)	-44	NM_001297740	6902	Hs.291212	NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
1.15205-10	chr4	9869684	9870183	+	0	NA	intron (NM_001001290, intron 11 of 12)	intron (NM_001001290, intron 11 of 12)	86675	NM_000798	1816	Hs.380681	NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
16.5561-3	chr15	98644976	98645475	+	0	NA	Intergenic	Intergenic	-13243	NR_120325	101927332		NR_120325		LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
5.51294-7	chr4	74478728	74479227	+	0	NA	intron (NM_201431, intron 1 of 10)	intron (NM_201431, intron 1 of 10)	7310	NM_001270391	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
0.231917-12	chr5	50185560	50186059	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	80212	NR_104653	100287592	Hs.519298	NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
1.46302-5	chr2	234263824	234264323	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	920	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
3.8405-17	chr11	13950178	13950677	+	0	NA	Intergenic	MIR|SINE|MIR	-4017	NR_135052	101928132	Hs.568970	NR_135052	ENSG00000254438	LOC101928132	-	uncharacterized LOC101928132	ncRNA
2.5649-14	chr18	53082459	53082958	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	7015	NM_001243233	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
7.64472-14	chr4	36776889	36777388	+	0	NA	Intergenic	Intergenic	-226263	NR_134669	100508631	Hs.397553	NR_134669	ENSG00000261761	LOC100508631	-	uncharacterized LOC100508631	ncRNA
1.58015-2	chrX	90463159	90463658	+	0	NA	Intergenic	Intergenic	-226189	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	poly(A) binding protein cytoplasmic 5	protein-coding
0.11441-24	chr5	171550190	171550689	+	0	NA	intron (NM_005990, intron 3 of 18)	intron (NM_005990, intron 3 of 18)	64907	NM_005990	6793	Hs.744005	NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
0.467237	chr9	18474419	18474918	+	0	NA	intron (NM_001040272, intron 1 of 28)	intron (NM_001040272, intron 1 of 28)	589	NM_052866	92949	Hs.741483	NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
0.634863-9	chr10	129536858	129537357	+	0	NA	exon (NM_207426, exon 2 of 2)	exon (NM_207426, exon 2 of 2)	1569	NM_207426	399823	Hs.449674	NM_207426	ENSG00000186766	FOXI2	-	forkhead box I2	protein-coding
11.2263-2	chr2	38000487	38000986	+	0	NA	Intergenic	Intergenic	56118	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
0.899095-7	chr6	157297430	157297929	+	0	NA	intron (NM_020732, intron 5 of 19)	LTR12F|LTR|ERV1	-196814	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
0.438316-12	chr3	53798276	53798775	+	0	NA	intron (NM_001128839, intron 30 of 45)	intron (NM_001128839, intron 30 of 45)	81895	NM_018397	55349	Hs.126688	NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
18.2391-4	chrX	9846407	9846906	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-33756	NM_001320663	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
2.38072-9	chr2	32454672	32455171	+	0	NA	intron (NM_001199139, intron 8 of 8)	L2b|LINE|L2	35028	NM_001199138	58484	Hs.574741	NM_021209	ENSG00000091106	NLRC4	AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF	NLR family CARD domain containing 4	protein-coding
5.01689-8	chr16	50581902	50582401	+	0	NA	promoter-TSS (NM_033119)	promoter-TSS (NM_033119)	-90	NM_033119	85407	Hs.187578	NM_033119	ENSG00000140807	NKD1	Naked1	naked cuticle homolog 1	protein-coding
1.45694-12	chr9	135989395	135989894	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	6993	NM_006266	5900	Hs.106185	NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
4.84126-3	chr2	18074143	18074642	+	0	NA	intron (NM_002252, intron 1 of 2)	L1PB1|LINE|L1	14468	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
13.7059-4	chr2	234389414	234389913	+	0	NA	intron (NM_018218, intron 30 of 30)	intron (NM_018218, intron 30 of 30)	84573	NM_018218	55230	Hs.96513	NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
0.695604-4	chr2	46769332	46769831	+	0	NA	promoter-TSS (NM_012249)	promoter-TSS (NM_012249)	115	NM_001318063	90423	Hs.659656	NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
4.1005-11	chr15	99320155	99320654	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-7251	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
1.77832-6	chr2	128177292	128177791	+	0	NA	exon (NM_000312, exon 2 of 9)	exon (NM_000312, exon 2 of 9)	1545	NM_000312	5624	Hs.224698	NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
3.40084-12	chr10	1615154	1615653	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	46578	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
2.80669-5	chr14	89259202	89259701	+	0	NA	promoter-TSS (NM_183387)	promoter-TSS (NM_183387)	-355	NM_183387	161436	Hs.325846	NM_183387	ENSG00000165521	EML5	EMAP-2	echinoderm microtubule associated protein like 5	protein-coding
9.24453-8	chr5	121652868	121653367	+	0	NA	intron (NM_001308107, intron 1 of 8)	intron (NM_001308107, intron 1 of 8)	5353	NM_001242935	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
0.990869-14	chr6	149866967	149867466	+	0	NA	promoter-TSS (NM_139126)	promoter-TSS (NM_139126)	22	NM_139126	85313	Hs.744238	NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
2.19683-4	chr14	60797864	60798363	+	0	NA	Intergenic	Intergenic	82147	NM_021003	5494	Hs.130036	NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
3.15155-11	chr16	88571761	88572260	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	36684	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
0.296531-33	chr2	86667693	86668192	+	0	NA	promoter-TSS (NM_018433)	promoter-TSS (NM_018433)	-329	NM_018433	55818	Hs.557425	NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
0.296531-9	chr6	99375281	99375780	+	0	NA	intron (NM_012160, intron 2 of 8)	intron (NM_012160, intron 2 of 8)	20352	NM_012160	26235	Hs.536850	NM_012160	ENSG00000112234	FBXL4	FBL4|FBL5|MTDPS13	F-box and leucine rich repeat protein 4	protein-coding
4.80172	chr17	66297481	66297980	+	0	NA	intron (NM_001267727, intron 1 of 11)	L2a|LINE|L2	10094	NM_001267727	22901	Hs.437249	NM_014960	ENSG00000141337	ARSG	-	arylsulfatase G	protein-coding
1.2436-17	chr17	56083755	56084254	+	0	NA	intron (NR_034041, intron 1 of 3)	CpG	703	NM_001078166	6426	Hs.68714	NM_006924	ENSG00000136450	SRSF1	ASF|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
0.574959-17	chr3	193856778	193857277	+	0	NA	TTS (NM_005524)	TTS (NM_005524)	3096	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
8.41638-13	chr6	88721894	88722393	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-35364	NM_030960	81833	Hs.161241	NM_030960	ENSG00000118434	SPACA1	SAMP32	sperm acrosome associated 1	protein-coding
0.268721-26	chr17	35848965	35849464	+	0	NA	promoter-TSS (NM_007026)	promoter-TSS (NM_007026)	-737	NM_007026	11072	Hs.91448	NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
22.8567	chr6	110733518	110734017	+	0	NA	intron (NM_003649, intron 2 of 4)	MLT1I|LTR|ERVL-MaLR	2986	NM_003649	8528	Hs.591348	NM_003649	ENSG00000203797	DDO	DASOX|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
4.05607-6	chr8	128578003	128578502	+	0	NA	Intergenic	Intergenic	-83868	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
2.84833-6	chr16	67051730	67052229	+	0	NA	Intergenic	Intergenic	-11071	NM_001755	865	Hs.460988	NM_001755	ENSG00000067955	CBFB	PEBP2B	core-binding factor beta subunit	protein-coding
0.109954-23	chr2	71203896	71204395	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1430	NM_001115116	79998	Hs.512744	NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
13.4969	chr16	89904044	89904543	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	9386	NM_032451	84501	Hs.461786	NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
26.5561	chr2	127455894	127456393	+	0	NA	Intergenic	Intergenic	42632	NM_001256584	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
1.15205-2	chr5	95998238	95998737	+	0	NA	promoter-TSS (NM_001330628)	promoter-TSS (NM_001330628)	-196	NM_001330629	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding
3.36299-12	chr13	47125567	47126066	+	0	NA	Intergenic	Intergenic	-1480	NM_015116	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
0.883098-6	chr18	47943228	47943727	+	0	NA	Intergenic	SVA_A|Other|Other	42085	NM_145060	220134	Hs.134726	NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
7.64472-9	chr2	202679147	202679646	+	0	NA	intron (NM_139158, intron 4 of 13)	intron (NM_139158, intron 4 of 13)	8094	NM_001261435	65061	Hs.348711	NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
2.24026-16	chr2	222577762	222578261	+	0	NA	Intergenic	L2a|LINE|L2	-139089	NM_001304536	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
1.37869-23	chr19	18043812	18044311	+	0	NA	intron (NM_001136203, intron 1 of 4)	CpG	237	NM_001136203	115098	Hs.100043	NM_138442	ENSG00000007080	CCDC124	-	coiled-coil domain containing 124	protein-coding
12.652-2	chr3	137801279	137801778	+	0	NA	intron (NM_173543, intron 8 of 15)	intron (NM_173543, intron 8 of 15)	30794	NM_001170538	199221	Hs.351403	NM_173543	ENSG00000158163	DZIP1L	DZIP2	DAZ interacting zinc finger protein 1 like	protein-coding
0.400052-34	chr20	43922034	43922533	+	0	NA	3' UTR (NM_030592, exon 8 of 8)	3' UTR (NM_030592, exon 8 of 8)	-13200	NM_001281448	11317	Hs.248217	NM_014276	ENSG00000124232	RBPJL	RBPL|RBPSUHL|SUHL	recombination signal binding protein for immunoglobulin kappa J region like	protein-coding
2.36572-2	chr12	56709828	56710327	+	0	NA	promoter-TSS (NM_014255)	promoter-TSS (NM_014255)	51	NM_001190991	10330	Hs.8752	NM_014255	ENSG00000257727	CNPY2	HP10390|MSAP|TMEM4|ZSIG9	canopy FGF signaling regulator 2	protein-coding
0.329203-11	chr22	32026581	32027080	+	0	NA	promoter-TSS (NM_014338)	promoter-TSS (NM_014338)	-20	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
1.4813-3	chr12	64276540	64277039	+	0	NA	intron (NM_020762, intron 1 of 21)	intron (NM_020762, intron 1 of 21)	38256	NM_001346201	57522	Hs.210751	NM_020762	ENSG00000196935	SRGAP1	ARHGAP13|NMTC2	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
12.4185-3	chr2	241757875	241758374	+	0	NA	intron (NM_001330290, intron 1 of 47)	intron (NM_001330290, intron 1 of 47)	1601	NM_001244008	547	Hs.516802	NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
1.45694-9	chr3	125635779	125636278	+	0	NA	intron (NR_024251, intron 1 of 4)	intron (NR_024251, intron 1 of 4)	584	NR_024251	100125556	Hs.553949	NR_024250	ENSG00000171084	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
0.070049-2	chr15	53387467	53387966	+	0	NA	Intergenic	AluJo|SINE|Alu	-305507	NM_004498	3175	Hs.658573	NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
15.0864-5	chr8	134309536	134310035	+	0	NA	promoter-TSS (NM_001258432)	promoter-TSS (NM_001258432)	-238	NM_001135242	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
10.5012-3	chr13	62057251	62057750	+	0	NA	Intergenic	Intergenic	-55421	NR_134946	101926951	Hs.732367	NR_134946	ENSG00000279797	LOC101926951	-	uncharacterized LOC101926951	ncRNA
2.81498-12	chr17	6129927	6130426	+	0	NA	Intergenic	SVA_D|Other|Other	156242	NM_015253	23302	Hs.370166	NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
8.86057-19	chr5	156247109	156247608	+	0	NA	Intergenic	Intergenic	-30191	NR_038443	153743	Hs.567727	NM_206858	ENSG00000231989	PPP1R2P3	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 3	pseudo
0.241089-38	chr14	77300665	77301164	+	0	NA	intron (NM_194287, intron 3 of 13)	L2c|LINE|L2	8189	NM_194287	145497	Hs.147276	NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
19.5861	chr19	15234625	15235124	+	0	NA	intron (NM_006844, intron 2 of 15)	intron (NM_006844, intron 2 of 15)	1736	NM_006844	10994	Hs.78880	NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|ILV2H	ilvB acetolactate synthase like	protein-coding
1.23205-10	chr10	6244548	6245047	+	0	NA	promoter-TSS (NM_001314063)	promoter-TSS (NM_001314063)	-43	NM_004566	5209	Hs.195471	NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
0.462403-6	chr16	50186203	50186702	+	0	NA	promoter-TSS (NM_001040284)	promoter-TSS (NM_001040284)	-377	NM_001040285	64282	Hs.514342	NM_022447	ENSG00000121274	PAPD5	TRF4-2	poly(A) RNA polymerase D5, non-canonical	protein-coding
0.305841-17	chr4	9154879	9155378	+	0	NA	Intergenic	CpG	-57255	NM_001256852	100287144	Hs.741130	NM_001256852	ENSG00000231396	USP17L10	-	ubiquitin specific peptidase 17-like family member 10	protein-coding
0.530567-3	chr13	79380505	79381004	+	0	NA	intron (NR_046869, intron 2 of 4)	L1MA4|LINE|L1	33431	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
0.070049-48	chrX	16964445	16964944	+	0	NA	promoter-TSS (NM_004726)	promoter-TSS (NM_004726)	-120	NM_004726	9185	Hs.186810	NM_004726	ENSG00000169891	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
5.70248-4	chr1	43232586	43233085	+	0	NA	promoter-TSS (NM_022356)	promoter-TSS (NM_022356)	-80	NM_022356	64175	Hs.720014	NM_022356	ENSG00000117385	P3H1	GROS1|LEPRE1|OI8	prolyl 3-hydroxylase 1	protein-coding
9.39302	chr6	42182448	42182947	+	0	NA	intron (NM_018141, intron 1 of 6)	intron (NM_018141, intron 1 of 6)	2936	NM_018141	55173	Hs.380887	NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122	mitochondrial ribosomal protein S10	protein-coding
1.51195-32	chr4	154452787	154453286	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	65538	NM_001131007	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
8.23909-3	chr3	174848884	174849383	+	0	NA	intron (NM_207015, intron 2 of 13)	SVA_D|Other|Other	-16101	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
4.65974-20	chr10	70031184	70031683	+	0	NA	Intergenic	Intergenic	-39563	NM_145178	220202	Hs.175396	NM_145178	ENSG00000179774	ATOH7	Math5|NCRNA|PHPVAR|RNANC|bHLHa13	atonal bHLH transcription factor 7	protein-coding
2.78189-21	chr8	93721686	93722185	+	0	NA	Intergenic	Intergenic	-54213	NR_125827	102724710	Hs.125714	NR_125827	ENSG00000253634	LOC102724710	-	uncharacterized LOC102724710	ncRNA
7.64472-3	chrY	27288511	27289010	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	42160	NR_002180	474151	Hs.741142	NR_002180	ENSG00000227439	TTTY17B	NCRNA00141	testis-specific transcript, Y-linked 17B (non-protein coding)	ncRNA
1.22629-34	chr20	13976370	13976869	+	0	NA	promoter-TSS (NR_073207)	promoter-TSS (NR_073207)	473	NM_080676	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
3.21482-8	chr12	80085060	80085559	+	0	NA	promoter-TSS (NM_002583)	promoter-TSS (NM_002583)	-519	NM_002583	5074	Hs.643130	NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding
0.245682-22	chr19	14516847	14517346	+	0	NA	intron (NM_078481, intron 14 of 19)	CpG	13099	NR_046366	10212	Hs.311609	NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
11.1351	chr21	44181370	44181869	+	0	NA	intron (NM_002606, intron 13 of 19)	intron (NM_002606, intron 13 of 19)	18485	NR_135517	101928311	Hs.570404	NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
8.32683-5	chr11	15694848	15695347	+	0	NA	intron (NM_001293172, intron 1 of 2)	intron (NM_001293172, intron 1 of 2)	29666	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
1.72631	chr16	19851936	19852435	+	0	NA	intron (NR_130968, intron 8 of 8)	intron (NR_130968, intron 8 of 8)	44048	NM_016235	51704	Hs.148685	NM_016235	ENSG00000167191	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
1.39063-13	chr1	230443748	230444247	+	0	NA	Intergenic	Intergenic	117677	NM_001258311	79605	Hs.520463	NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
1.45087-12	chr4	186124426	186124925	+	0	NA	promoter-TSS (NM_001317781)	promoter-TSS (NM_001317781)	507	NM_001292033	57587	Hs.535734	NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
1.37869-29	chr1	2477263	2477762	+	0	NA	Intergenic	Intergenic	-10292	NM_001297605	8764	Hs.512898	NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
1.71985-7	chr10	43265703	43266202	+	0	NA	TTS (NR_134498)	TTS (NR_134498)	-12002	NM_014753	9790	Hs.10848	NM_014753	ENSG00000165733	BMS1	ACC|BMS1L	BMS1, ribosome biogenesis factor	protein-coding
2.30623-22	chr13	94300172	94300671	+	0	NA	intron (NM_005708, intron 2 of 8)	L2|LINE|L2	210305	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
1.42065-13	chr18	22865139	22865638	+	0	NA	intron (NM_015461, intron 3 of 7)	intron (NM_015461, intron 3 of 7)	66826	NM_001308225	25925	Hs.116935	NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding
5.70248-7	chrUn_gl000225	103896	104395	+	0	NA	NA	Intergenic	NA	NA								
23.2422	chr2	169401116	169401615	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	-38088	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
2.62807-2	chr8	59689290	59689789	+	0	NA	Intergenic	SVA_B|Other|Other	-117135	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
13.5164	chr3	13136849	13137348	+	0	NA	Intergenic	Intergenic	-22481	NM_001134382	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
0.305841-19	chr17	79899273	79899772	+	0	NA	exon (NM_001145113, exon 3 of 3)	exon (NM_001145113, exon 3 of 3)	-4318	NM_001330523	5831	Hs.163451	NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
0.296531-147	chr6	13013909	13014408	+	0	NA	exon (NM_001322314, exon 1 of 13)	exon (NM_001322314, exon 1 of 13)	270	NM_001322314	221692	Hs.436996	NM_030948	ENSG00000112137	PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
4.01209-2	chr11	29470011	29470510	+	0	NA	Intergenic	Intergenic	533680	NR_132652	106456574	Hs.128812	NR_132652	ENSG00000261340	LINC01616	n341006	long intergenic non-protein coding RNA 1616	ncRNA
3.42944-3	chr21	38413932	38414431	+	0	NA	Intergenic	Intergenic	22185	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
3.19664-5	chr2	232547015	232547514	+	0	NA	Intergenic	Intergenic	-25971	NM_001099285	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding
0.315171-9	chr2	207558396	207558895	+	0	NA	intron (NM_001093730, intron 8 of 11)	intron (NM_001093730, intron 8 of 11)	24475	NM_001093730	391475	Hs.640667	NM_001093730	ENSG00000232125	DYTN	-	dystrotelin	protein-coding
2.0621-6	chr9	98269208	98269707	+	0	NA	promoter-TSS (NM_001083607)	promoter-TSS (NM_001083607)	24	NM_001083607	5727	Hs.494538	NM_000264	ENSG00000185920	PTCH1	BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11	patched 1	protein-coding
0.177288-18	chr12	104457964	104458463	+	0	NA	promoter-TSS (NM_001316967)	promoter-TSS (NM_001316967)	-23	NM_013320	29915	Hs.506558	NM_013320	ENSG00000111727	HCFC2	HCF-2|HCF2	host cell factor C2	protein-coding
0.540393-42	chr6	111302945	111303444	+	0	NA	promoter-TSS (NM_001289111)	promoter-TSS (NM_001289111)	-26	NM_001289111	84154	Hs.372265	NM_032194	ENSG00000197498	RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog	protein-coding
3.99027-2	chr6	12957841	12958340	+	0	NA	5' UTR (NM_001322312, exon 1 of 12)	5' UTR (NM_001322312, exon 1 of 12)	372	NM_001322312	221692	Hs.436996	NM_030948	ENSG00000112137	PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
0.952845-5	chr10	12085026	12085525	+	0	NA	promoter-TSS (NM_015542)	promoter-TSS (NM_015542)	-106	NM_080599	26019	Hs.370689	NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding
0.0612309-38	chr2	23637765	23638264	+	0	NA	intron (NM_052920, intron 1 of 13)	intron (NM_052920, intron 1 of 13)	29716	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
0.888424-5	chr2	234741426	234741925	+	0	NA	intron (NM_001287395, intron 41 of 41)	intron (NM_001287395, intron 41 of 41)	21537	NM_001282963	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
16.3827	chr1	237398315	237398814	+	0	NA	intron (NM_001035, intron 1 of 104)	intron (NM_001035, intron 1 of 104)	192862	NM_001035	6262	Hs.109514	NM_001035	ENSG00000198626	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2	protein-coding
2.29148-10	chr3	195634896	195635395	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	735	NM_005781	10188	Hs.518513	NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
1.67491-28	chr12	52257139	52257638	+	0	NA	Intergenic	Intergenic	15381	NR_135803	105369971	Hs.505582	NR_135803	ENSG00000259887	LOC105369971	-	uncharacterized LOC105369971	ncRNA
6.38272	chr1	10901101	10901600	+	0	NA	Intergenic	Intergenic	-44617	NM_001079843	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
1.59894-24	chr1	26798596	26799095	+	0	NA	promoter-TSS (NM_005517)	promoter-TSS (NM_005517)	-57	NM_005517	3151	Hs.181163	NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
2.80669-11	chr19	18043258	18043757	+	0	NA	promoter-TSS (NM_001136203)	promoter-TSS (NM_001136203)	-317	NM_001136203	115098	Hs.100043	NM_138442	ENSG00000007080	CCDC124	-	coiled-coil domain containing 124	protein-coding
11.986-3	chr6	6826301	6826800	+	0	NA	Intergenic	Intergenic	-203491	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
0.93665-8	chr20	2083622	2084121	+	0	NA	exon (NM_080836, exon 2 of 4)	exon (NM_080836, exon 2 of 4)	1343	NM_080836	140901	Hs.100057	NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
1.89096-6	chr4	159174461	159174960	+	0	NA	3' UTR (NM_018342, exon 13 of 13)	3' UTR (NM_018342, exon 13 of 13)	43309	NM_018342	55314	Hs.176227	NM_018342	ENSG00000164124	TMEM144	-	transmembrane protein 144	protein-coding
0.172766-49	chr7	93071991	93072490	+	0	NA	intron (NM_001742, intron 9 of 13)	intron (NM_001742, intron 9 of 13)	39927	NR_030388	724023		NR_030388	ENSG00000208014	MIR653	MIRN653|hsa-mir-653|mir-653	microRNA 653	ncRNA
1.43271-23	chr14	91841458	91841957	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	42481	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
1.34304-12	chr4	77869931	77870430	+	0	NA	promoter-TSS (NM_001306147)	promoter-TSS (NM_001306147)	-687	NM_001306147	55752	Hs.128199	NM_018243	ENSG00000138758	SEPT11	-	septin 11	protein-coding
0.555173-28	chr13	87465456	87465955	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-98470	NR_132371	106144533	Hs.525107	NR_132371		LINC00430	-	long intergenic non-protein coding RNA 430	ncRNA
0.414361-23	chr16	28751113	28751612	+	0	NA	Intergenic	Intergenic	-12394	NM_001287251	100507607	Hs.710214	NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
3.43902-7	chr9	139743506	139744005	+	0	NA	non-coding (NR_109807, exon 1 of 3)	non-coding (NR_109807, exon 1 of 3)	487	NM_001135861	29085	Hs.409834	NM_014172	ENSG00000054148	PHPT1	CGI-202|HEL-S-132P|HSPC141|PHP|PHP14	phosphohistidine phosphatase 1	protein-coding
3.01899-6	chr1	180922498	180922997	+	0	NA	Intergenic	Intergenic	40434	NM_020950	57710	Hs.734816	NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
2.29885-2	chr2	131792584	131793083	+	0	NA	intron (NM_015320, intron 5 of 13)	CpG	57698	NM_001321748	130074	Hs.534679	NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
1.91114-8	chr22	23624229	23624728	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	19524	NR_033408	26226	Hs.729589	NR_033408	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
1.2436-10	chr4	175750681	175751180	+	0	NA	promoter-TSS (NM_006529)	promoter-TSS (NM_006529)	-464	NM_001042543	8001	Hs.413099	NM_006529	ENSG00000145451	GLRA3	-	glycine receptor alpha 3	protein-coding
3.06273-10	chr17	78171797	78172296	+	0	NA	intron (NM_001257970, intron 12 of 14)	intron (NM_001257970, intron 12 of 14)	10447	NM_052819	79092	Hs.675480	NM_024110	ENSG00000141527	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family member 14	protein-coding
1.6877-15	chr18	75190512	75191011	+	0	NA	Intergenic	Intergenic	228753	NM_001480	2587	Hs.272191	NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
3.07153-2	chr11	64645576	64646075	+	0	NA	exon (NM_001282445, exon 2 of 6)	exon (NM_001282445, exon 2 of 6)	415	NM_006795	10938	Hs.523774	NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
1.66853-4	chr21	44299434	44299933	+	0	NA	promoter-TSS (NM_033661)	promoter-TSS (NM_033661)	10	NM_001260474	10785	Hs.248815	NM_018669	ENSG00000160193	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
21.8111-3	chr1	22940345	22940844	+	0	NA	Intergenic	Intergenic	19265	NR_106742	102466615		NR_106742	ENSG00000276835	MIR6127	hsa-mir-6127	microRNA 6127	ncRNA
4.37707-16	chr5	1751017	1751516	+	0	NA	Intergenic	Intergenic	-42283	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	ncRNA
0.231917-16	chr9	99984041	99984540	+	0	NA	intron (NR_136286, intron 1 of 17)	CpG	-16418	NR_036529	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
0.840728-2	chr15	100468444	100468943	+	0	NA	Intergenic	Intergenic	121465	NR_135737	400464	Hs.187134	NM_001013670	ENSG00000259363	LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
9.95679-3	chr10	82371959	82372458	+	0	NA	intron (NM_001145719, intron 6 of 6)	MLT1H|LTR|ERVL-MaLR	71633	NM_001145719	387694	Hs.147643	NM_207372	ENSG00000178217	SH2D4B	-	SH2 domain containing 4B	protein-coding
0.555173-8	chr2	219861601	219862100	+	0	NA	Intergenic	Intergenic	-3723	NM_057093	1412	Hs.415790	NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
5.28708-2	chr9	93563943	93564442	+	0	NA	promoter-TSS (NM_001174168)	promoter-TSS (NM_001174168)	-17	NM_001174168	6850	Hs.371720	NM_003177	ENSG00000165025	SYK	p72-Syk	spleen associated tyrosine kinase	protein-coding
0.390538-13	chr5	159545432	159545931	+	0	NA	intron (NM_001130864, intron 1 of 1)	CpG	771	NM_001130864	114825	Hs.744960	NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
12.2915-6	chr3	128653686	128654185	+	0	NA	Intergenic	Intergenic	55602	NR_033426	28976	Hs.567482	NM_014049	ENSG00000177646	ACAD9	NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
9.28118	chr11	55198416	55198915	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	63305	NM_001005275	81328	Hs.554529	NM_001005275	ENSG00000181958	OR4A15	OR11-118	olfactory receptor family 4 subfamily A member 15	protein-coding
7.85156-15	chr8	42911455	42911954	+	0	NA	intron (NR_033698, intron 1 of 7)	CpG	262	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, alpha	protein-coding
2.24026-3	chrX	148456177	148456676	+	0	NA	Intergenic	MIR|SINE|MIR	130458	NR_104128	3423	Hs.6795	NM_000202	ENSG00000010404	IDS	MPS2|SIDS	iduronate 2-sulfatase	protein-coding
0.132283-36	chr1	2207524	2208023	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	47639	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
12.7246-10	chrX	119786800	119787299	+	0	NA	Intergenic	LTR9|LTR|ERV1	-23044	NM_001011551	29071	Hs.643920	NM_152692	ENSG00000171155	C1GALT1C1	C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
32.2915-3	chr11	91680215	91680714	+	0	NA	Intergenic	Intergenic	-404798	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding
7.9588-10	chr9	134042552	134043051	+	0	NA	intron (NM_005085, intron 21 of 35)	L1ME3B|LINE|L1	-22701	NM_001318325	8021	Hs.654530	NM_005085	ENSG00000126883	NUP214	CAIN|CAN	nucleoporin 214	protein-coding
1.16339-15	chr2	216001585	216002084	+	0	NA	intron (NR_103740, intron 1 of 54)	intron (NR_103740, intron 1 of 54)	1317	NM_173076	26154	Hs.134585	NM_015657	ENSG00000144452	ABCA12	ARCI4A|ARCI4B|ICR2B|LI2	ATP binding cassette subfamily A member 12	protein-coding
1.22053-9	chr1	170633813	170634312	+	0	NA	intron (NM_006902, intron 1 of 4)	CpG	749	NM_022716	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
0.123337-30	chr2	139387672	139388171	+	0	NA	Intergenic	Intergenic	128571	NM_001001664	339745	Hs.333297	NM_001001664	ENSG00000144228	SPOPL	BTBD33	speckle type BTB/POZ protein like	protein-coding
1.67491-24	chr8	28515532	28516031	+	0	NA	Intergenic	Intergenic	43200	NR_126027	101929402	Hs.667366	NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
1.54282-12	chr8	33210076	33210575	+	0	NA	Intergenic	Intergenic	120339	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
5.63837-3	chr2	11029814	11030313	+	0	NA	Intergenic	Intergenic	11670	NR_110575	101929733	Hs.736697	NR_110575	ENSG00000271952	LINC01954	-	long intergenic non-protein coding RNA 1954	ncRNA
8.29738-6	chr3	179770654	179771153	+	0	NA	Intergenic	Intergenic	-16062	NM_016559	51555	Hs.235331	NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding
2.51037-6	chr6	74171502	74172001	+	0	NA	exon (NM_001123226, exon 1 of 13)	exon (NM_001123226, exon 1 of 13)	297	NM_133645	25821	Hs.347614	NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
2.70026-3	chr2	207024520	207025019	+	0	NA	promoter-TSS (NM_001199981)	promoter-TSS (NM_001199981)	451	NM_001959	1933	Hs.421608	NM_001959	ENSG00000114942	EEF1B2	EEF1B|EEF1B1|EF1B	eukaryotic translation elongation factor 1 beta 2	protein-coding
16.7366	chr7	17762192	17762691	+	0	NA	Intergenic	Intergenic	-163908	NR_110013	101927630	Hs.583400	NR_110013	ENSG00000236039	LOC101927630	-	uncharacterized LOC101927630	ncRNA
1.59267	chr1	155231902	155232401	+	0	NA	promoter-TSS (NM_005698)	promoter-TSS (NM_005698)	25	NM_052837	10067	Hs.200600	NM_005698	ENSG00000116521	SCAMP3	C1orf3	secretory carrier membrane protein 3	protein-coding
6.17983-9	chr4	103997590	103998089	+	0	NA	promoter-TSS (NM_001300756)	promoter-TSS (NM_001300756)	91	NM_001300756	133308	Hs.546482	NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
12.6281	chr18	46476124	46476623	+	0	NA	promoter-TSS (NM_001190822)	promoter-TSS (NM_001190822)	-670	NM_001190822	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
3.53596-19	chr12	109535596	109536095	+	0	NA	promoter-TSS (NM_003362)	promoter-TSS (NM_003362)	-78	NM_003362	7374	Hs.191334	NM_003362	ENSG00000076248	UNG	DGU|HIGM4|HIGM5|UDG|UNG1|UNG15|UNG2	uracil DNA glycosylase	protein-coding
21.1691-2	chr13	45300172	45300671	+	0	NA	Intergenic	Intergenic	83345	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
12.2185	chr1	38455561	38456060	+	0	NA	promoter-TSS (NM_006802)	promoter-TSS (NM_006802)	-28	NM_001320830	10946	Hs.77897	NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
18.8273-3	chr9	120992556	120993055	+	0	NA	Intergenic	Intergenic	526352	NM_138557	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
1.33713-7	chr1	65613235	65613734	+	0	NA	promoter-TSS (NM_013410)	promoter-TSS (NM_013410)	-29	NM_001005353	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
30.2182-4	chr9	129783937	129784436	+	0	NA	intron (NM_001190728, intron 3 of 16)	intron (NM_001190728, intron 3 of 16)	59682	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
1.75874-13	chr5	172710650	172711149	+	0	NA	Intergenic	CpG	45607	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
2.18963-13	chr3	128327054	128327553	+	0	NA	Intergenic	CpG	-32374	NR_125802	23434	Hs.194283	NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
1.53045-12	chr15	55402675	55403174	+	0	NA	Intergenic	MIRc|SINE|MIR	53979	NR_135679	105370829	Hs.174934	NR_135679	ENSG00000260937	LOC105370829	-	uncharacterized LOC105370829	ncRNA
1.61781-5	chr5	138468861	138469360	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	64955	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
10.013-7	chr11	20111600	20112099	+	0	NA	intron (NM_001111019, intron 16 of 27)	intron (NM_001111019, intron 16 of 27)	-41000	NR_046672	100874014	Hs.557916	NR_046672	ENSG00000254453	NAV2-AS2	-	NAV2 antisense RNA 2	ncRNA
0.777937-8	chr13	34250717	34251216	+	0	NA	promoter-TSS (NM_001243476)	promoter-TSS (NM_001243476)	6	NM_001243476	90627	Hs.156551	NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
15.4975-3	chr14	59583731	59584230	+	0	NA	Intergenic	Intergenic	-71401	NM_001270520	23002	Hs.19156	NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
1.70696-14	chr4	17599078	17599577	+	0	NA	intron (NM_015907, intron 9 of 12)	intron (NM_015907, intron 9 of 12)	-16924	NM_025205	80306	Hs.731966	NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
5.96879	chr3	149118942	149119441	+	0	NA	Intergenic	Intergenic	-23623	NM_014220	4071	Hs.351316	NM_014220	ENSG00000169908	TM4SF1	H-L6|L6|M3S1|TAAL6	transmembrane 4 L six family member 1	protein-coding
1.31944-5	chr17	36178231	36178730	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	65883	NR_024178	284100	Hs.434159	NM_001129906	ENSG00000276715	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7	pseudo
2.49492-5	chr12	131162499	131162998	+	0	NA	Intergenic	Intergenic	-160338	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
3.93619-17	chr3	123056709	123057208	+	0	NA	intron (NM_183357, intron 3 of 20)	intron (NM_183357, intron 3 of 20)	78231	NM_001199642	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
23.7779-2	chr17	44019517	44020016	+	0	NA	intron (NM_001123066, intron 1 of 14)	intron (NM_001123066, intron 1 of 14)	46617	NR_024560	100130148	Hs.669307	NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA
15.0724-2	chr12	75017962	75018461	+	0	NA	Intergenic	L1MC1|LINE|L1	86660	NM_001136262	552889	Hs.744849	NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
0.540393-22	chr13	65102884	65103383	+	0	NA	Intergenic	Intergenic	-684875	NR_130763	102723968	Hs.551671	NR_130763	ENSG00000219926	LOC102723968	-	uncharacterized LOC102723968	ncRNA
11.831-4	chr1	234445571	234446070	+	0	NA	intron (NM_001300845, intron 3 of 6)	intron (NM_001300845, intron 3 of 6)	3607	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
0.347983-5	chr19	34112509	34113008	+	0	NA	promoter-TSS (NM_001127895)	promoter-TSS (NM_001127895)	-103	NM_001127895	64377	Hs.165724	NM_022467	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST|PSS3	carbohydrate sulfotransferase 8	protein-coding
1.73277-4	chr12	8198424	8198923	+	0	NA	intron (NM_018416, intron 6 of 10)	intron (NM_018416, intron 6 of 10)	13314	NM_018416	55810	Hs.120844	NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
11.8177-4	chr2	223958004	223958503	+	0	NA	Intergenic	Intergenic	41605	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
0.76756-10	chr2	25050067	25050566	+	0	NA	intron (NM_001320613, intron 15 of 21)	intron (NM_001320613, intron 15 of 21)	-34065	NM_001013663	391356	Hs.406607	NM_001013663	ENSG00000184924	PTRHD1	C2orf79	peptidyl-tRNA hydrolase domain containing 1	protein-coding
25.1145	chr18	71850305	71850804	+	0	NA	Intergenic	Intergenic	34808	NM_014177	29090	Hs.532835	NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
1.35489-33	chr17	8191790	8192289	+	0	NA	promoter-TSS (NM_001177801)	promoter-TSS (NM_001177801)	70	NM_016492	29098	Hs.408233	NM_016492	ENSG00000108961	RANGRF	HSPC165|HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
26.6959-2	chr12	92759469	92759968	+	0	NA	Intergenic	Intergenic	-55589	NR_027933	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
15.867-3	chr15	52549679	52550178	+	0	NA	intron (NM_018728, intron 10 of 40)	MIR|SINE|MIR	19469	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
17.9588-2	chr4	8280540	8281039	+	0	NA	intron (NM_053044, intron 1 of 8)	intron (NM_053044, intron 1 of 8)	9297	NM_001297559	94031	Hs.479119	NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
5.80044-3	chr1	201857155	201857654	+	0	NA	promoter-TSS (NR_030775)	promoter-TSS (NR_030775)	-393	NR_030775	149345	Hs.632471	NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
21.7914	chr1	209010645	209011144	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-487907	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
1.56767-5	chr4	124468205	124468704	+	0	NA	Intergenic	Intergenic	-105486	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
2.48721-8	chr13	103352723	103353222	+	0	NA	Intergenic	Intergenic	-6101	NM_001010977	196541	Hs.508623	NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase like 21C	protein-coding
0.555173-23	chr7	3612844	3613343	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	272013	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
3.9794-3	chr2	11047131	11047630	+	0	NA	Intergenic	Intergenic	-4683	NM_002236	3754	Hs.23735	NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
8.8941-7	chr7	81516316	81516815	+	0	NA	Intergenic	Intergenic	-117051	NM_001010931	3082	Hs.396530	NM_000601	ENSG00000019991	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor	protein-coding
2.58848-13	chr5	78531675	78532322	+	0	NA	promoter-TSS (NM_152405)	promoter-TSS (NM_152405)	73	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
1.57391-9	chr4	135489912	135490411	+	0	NA	Intergenic	Intergenic	-367258	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein cytoplasmic 4 like	protein-coding
1.33122-4	chr3	111578864	111579363	+	0	NA	intron (NM_001134439, intron 1 of 17)	intron (NM_001134439, intron 1 of 17)	545	NM_001134439	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
2.98432-16	chr1	120255583	120256082	+	0	NA	intron (NM_006623, intron 1 of 11)	intron (NM_006623, intron 1 of 11)	1413	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
0.710923-6	chr14	69993445	69993944	+	0	NA	intron (NM_001161498, intron 10 of 12)	intron (NM_001161498, intron 10 of 12)	42223	NM_001161498	400224	Hs.509796	NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology and coiled-coil domain containing D1	protein-coding
1.19186-43	chr1	10747124	10747623	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	109360	NM_017766	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
0.920515-31	chr6	170139206	170139705	+	0	NA	TTS (NM_174910)	TTS (NM_174910)	12224	NM_174910	6991	Hs.733746	NM_174910	ENSG00000184786	TCTE3	TCTEX1D3	t-complex-associated-testis-expressed 3	protein-coding
6.57577	chr16	31518896	31519395	+	0	NA	exon (NM_022744, exon 2 of 13)	exon (NM_022744, exon 2 of 13)	595	NM_022744	64755	Hs.9003	NM_022744	ENSG00000140688	C16orf58	RUS	chromosome 16 open reading frame 58	protein-coding
3.90406-9	chr21	44706885	44707384	+	0	NA	Intergenic	L1MC4a|LINE|L1	44785	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
0.452752	chr5	40689496	40689995	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	9713	NM_000958	5734	Hs.199248	NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
3.10691-3	chr19	38852610	38853109	+	0	NA	exon (NM_021185, exon 18 of 29)	exon (NM_021185, exon 18 of 29)	-12331	NM_002812	5714	Hs.78466	NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
22.8735	chr7	29997488	29997987	+	0	NA	intron (NM_001145515, intron 1 of 6)	7SK|RNA|RNA	31688	NM_001145515	9805	Hs.520740	NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
7.28158-12	chr5	14167603	14168102	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	24041	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
3.95774-14	chr2	135532160	135532659	+	0	NA	Intergenic	Intergenic	-55838	NM_030923	81615	Hs.369471	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
5.62249-14	chr20	31147416	31147915	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	25210	NM_001256798	140688	Hs.516978	NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4 like	protein-coding
3.15155-7	chr5	132759394	132759893	+	0	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	3755	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
21.1691-3	chr5	167605242	167605741	+	0	NA	intron (NM_001080428, intron 10 of 24)	intron (NM_001080428, intron 10 of 24)	53886	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
0.15923-9	chr5	139090072	139090571	+	0	NA	Intergenic	CpG	35296	NM_001317210	51523	Hs.189119	NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
3.72634-11	chr4	28892	29391	+	0	NA	Intergenic	Intergenic	-24038	NM_001286054	152687	Hs.709469	NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
11.5927-8	chr18	56448719	56449218	+	0	NA	Intergenic	Intergenic	-80864	NM_018181	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
10.57	chr1	70538176	70538675	+	0	NA	intron (NM_001330635, intron 23 of 26)	intron (NM_001330635, intron 23 of 26)	132936	NM_017768	55631	Hs.147836	NM_017768	ENSG00000066557	LRRC40	dJ677H15.1	leucine rich repeat containing 40	protein-coding
0.376307-34	chr14	76044001	76044500	+	0	NA	promoter-TSS (NM_017791)	promoter-TSS (NM_017791)	-690	NM_017791	55640	Hs.509966	NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH	feline leukemia virus subgroup C cellular receptor family member 2	protein-coding
1.15771-10	chr17	49008697	49009196	+	0	NA	Intergenic	CpG	-63607	NM_001243877	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
8.47712-5	chr16	52606554	52607053	+	0	NA	intron (NR_033920, intron 2 of 3)	intron (NR_033920, intron 2 of 3)	-25089	NM_001146188	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
4.27128-15	chr14	79884859	79885358	+	0	NA	intron (NM_001105250, intron 1 of 6)	intron (NM_001105250, intron 1 of 6)	139426	NM_001272020	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
2.66001-15	chr1	212782576	212783075	+	0	NA	intron (NM_001206488, intron 1 of 3)	CpG-2160	855	NM_001206484	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
0.824945-6	chr4	146099979	146100478	+	0	NA	intron (NM_001102653, intron 1 of 20)	intron (NM_001102653, intron 1 of 20)	604	NM_001102653	54726	Hs.270851	NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
8.32683-8	chr16	81667070	81667569	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	22366	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
5.49751-3	chr5	156721633	156722132	+	0	NA	intron (NM_001037333, intron 4 of 30)	intron (NM_001037333, intron 4 of 30)	25530	NM_014376	26999	Hs.519702	NM_014376	ENSG00000055163	CYFIP2	PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
7.77284-8	chr6	111946801	111947300	+	0	NA	Intergenic	Intergenic	-19573	NM_001164281	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
10.278	chr18	13164239	13164738	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-54241	NM_181482	753	Hs.731853	NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
3.36299-14	chr2	20709670	20710169	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	63087	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
1.46302-9	chr22	41593371	41593991	+	0	NA	promoter-TSS (NR_110514)	promoter-TSS (NR_110514)	-176	NR_110514	101927279	Hs.517517	NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
2.44125-12	chr2	55920737	55921236	+	0	NA	promoter-TSS (NM_033109)	promoter-TSS (NM_033109)	59	NM_033109	87178	Hs.388733	NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
0.338583-26	chr19	36360428	36360927	+	0	NA	exon (NM_005166, exon 2 of 17)	exon (NM_005166, exon 2 of 17)	1330	NM_001024807	333	Hs.74565	NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
1.88425-7	chr18	7908837	7909336	+	0	NA	intron (NM_001105244, intron 4 of 32)	intron (NM_001105244, intron 4 of 32)	341772	NM_002845	5797	Hs.49774	NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type M	protein-coding
0.15923-35	chr14	20929666	20930165	+	0	NA	promoter-TSS (NM_001100814)	promoter-TSS (NM_001100814)	-144	NM_144568	90809	Hs.7001	NM_144568	ENSG00000165782	TMEM55B	C14orf9	transmembrane protein 55B	protein-coding
0.0921731-3	chr2	135218059	135218558	+	0	NA	intron (NM_030923, intron 6 of 7)	intron (NM_030923, intron 6 of 7)	206478	NM_002410	4249	Hs.4988	NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
2.95849-7	chr16	47176731	47177230	+	0	NA	promoter-TSS (NR_110903)	promoter-TSS (NR_110903)	956	NM_018092	81831	Hs.645802	NM_018092	ENSG00000171208	NETO2	BTCL2|NEOT2	neuropilin and tolloid like 2	protein-coding
0.105502-3	chr1	33642006	33642505	+	0	NA	promoter-TSS (NM_001330483)	promoter-TSS (NM_001330483)	-104	NM_001330483	55223	Hs.656006	NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
34.8812	chr12	24704343	24704842	+	0	NA	intron (NM_001261414, intron 1 of 16)	intron (NM_001261414, intron 1 of 16)	10932	NM_001261414	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding
1.34304	chr6	35490470	35490969	+	0	NA	Intergenic	Intergenic	-10004	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
0.222764-17	chr3	69788227	69788726	+	0	NA	promoter-TSS (NM_198159)	promoter-TSS (NM_198159)	-110	NM_198159	4286	Hs.166017	NM_000248	ENSG00000187098	MITF	CMM8|MI|WS2|WS2A|bHLHe32	melanogenesis associated transcription factor	protein-coding
0.400052-42	chr2	7171727	7172226	+	0	NA	intron (NM_014746, intron 8 of 8)	MER58A|DNA|hAT-Charlie	46035	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
14.8678	chr5	34109666	34110165	+	0	NA	intron (NR_037951, intron 1 of 8)	MLT1G3|LTR|ERVL-MaLR	14718	NR_037951	100534612	Hs.171929	NR_037951	ENSG00000273294	C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA
2.66001-18	chr2	106429005	106429504	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-38950	NM_001004720	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
0.0392635-7	chr17	908571	909070	+	0	NA	3' UTR (NM_001322840, exon 23 of 23)	3' UTR (NM_001322840, exon 23 of 23)	8687	NM_013337	29928	Hs.745034	NM_013337	ENSG00000177370	TIMM22	TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
3.76751-9	chr17	62770513	62771012	+	0	NA	intron (NR_026899, intron 3 of 12)	intron (NR_026899, intron 3 of 12)	-6115	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
3.40084-19	chr7	108257970	108258469	+	0	NA	Intergenic	Intergenic	-48007	NM_001287601	168451	Hs.707689	NM_182529	ENSG00000177683	THAP5	-	THAP domain containing 5	protein-coding
0.213631-8	chr14	54907576	54908075	+	0	NA	intron (NM_005776, intron 1 of 4)	CpG	323	NM_005776	10175	Hs.294603	NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family AMPA receptor auxiliary protein 1	protein-coding
7.64472-7	chr4	2964933	2965432	+	0	NA	promoter-TSS (NM_005307)	promoter-TSS (NM_005307)	51	NM_003703	8602	Hs.627133	NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
6.51695-17	chr7	32535559	32536058	+	0	NA	promoter-TSS (NM_001130710)	promoter-TSS (NM_001130710)	770	NM_015060	23080	Hs.128056	NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
2.09715-6	chr19	47104025	47104524	+	0	NA	promoter-TSS (NM_001329926)	promoter-TSS (NM_001329926)	-57	NM_001329921	808	Hs.515487	NM_005184	ENSG00000160014	CALM3	CaM|CaMIII|HEL-S-72|PHKD|PHKD3	calmodulin 3	protein-coding
15.7349-3	chr12	108784594	108785093	+	0	NA	Intergenic	Intergenic	-51749	NM_001142344	1240	Hs.197143	NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemerin chemokine-like receptor 1	protein-coding
2.31362-6	chr12	107485676	107486175	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	1710	NM_004075	1407	Hs.151573	NM_004075	ENSG00000008405	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
3.91474-6	chr6	126110697	126111196	+	0	NA	promoter-TSS (NM_001199621)	promoter-TSS (NM_001199621)	-963	NM_001199621	135112	Hs.171426	NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
0.716041	chr4	53523863	53524362	+	0	NA	intron (NM_022832, intron 1 of 8)	intron (NM_022832, intron 1 of 8)	-1353	NM_001134223	64854	Hs.7966	NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
0.213631-28	chr15	68992810	68993309	+	0	NA	intron (NM_001190456, intron 3 of 11)	intron (NM_001190456, intron 3 of 11)	59217	NM_001324015	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
1.14639-4	chr8	134307216	134307715	+	0	NA	intron (NM_006096, intron 1 of 15)	intron (NM_006096, intron 1 of 15)	2082	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
3.06273-9	chr16	58767995	58768494	+	0	NA	promoter-TSS (NM_002080)	promoter-TSS (NM_002080)	17	NM_001286220	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
0.540393-24	chr5	89729857	89730356	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	24289	NR_105024	731157	Hs.551062	NR_105024	ENSG00000255647	LOC731157	-	uncharacterized LOC731157	ncRNA
1.04025-13	chrX	102942071	102942570	+	0	NA	promoter-TSS (NM_001142418)	promoter-TSS (NM_001142418)	108	NR_038978	340544	Hs.441076	NR_038978		MORF4L2-AS1	-	MORF4L2 antisense RNA 1	ncRNA
0.540393-36	chr17	74864258	74864757	+	0	NA	promoter-TSS (NM_144677)	promoter-TSS (NM_144677)	-291	NM_144677	146664	Hs.144531	NM_144677	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
0.296531-56	chr12	82038213	82038712	+	0	NA	intron (NM_001220474, intron 2 of 30)	intron (NM_001220474, intron 2 of 30)	-46312	NM_001220477	8499	Hs.506216	NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding
7.39929	chr1	232805987	232806486	+	0	NA	Intergenic	Intergenic	72225	NR_110683	101927683	Hs.520568	NR_110683	ENSG00000236497	LINC01744	-	long intergenic non-protein coding RNA 1744	ncRNA
0.409586-6	chr10	80309185	80309684	+	0	NA	Intergenic	MIRb|SINE|MIR	282349	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
16.3451-2	chr1	3493722	3494221	+	0	NA	intron (NM_001409, intron 4 of 36)	MIRb|SINE|MIR	-16617	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
0.0877392-43	chr4	36577227	36577726	+	0	NA	Intergenic	L1PA8|LINE|L1	-149426	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
1.31944-15	chr1	77090575	77091074	+	0	NA	intron (NM_152996, intron 3 of 4)	MIR3|SINE|MIR	-242269	NM_001320273	81849	Hs.149201	NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
52.6761	chr1	194724718	194725217	+	0	NA	Intergenic	Intergenic	1451092	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
0.0833099-26	chr20	17552815	17553314	+	0	NA	intron (NM_006870, intron 1 of 3)	MamSINE1|SINE|tRNA	2465	NM_001011546	11034	Hs.304192	NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
0.599818-11	chr12	124758098	124758597	+	0	NA	intron (NM_001204299, intron 3 of 4)	MLT1H|LTR|ERVL-MaLR	-15363	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	RFLNA	CFM2|FAM101A	refilin A	protein-coding
1.81774-7	chr10	31422522	31423021	+	0	NA	Intergenic	CpG	-54041	NR_134478	101929352	Hs.209289	NR_134478		LOC101929352	-	uncharacterized LOC101929352	ncRNA
1.19186-10	chr1	77333737	77334450	+	0	NA	intron (NM_030965, intron 1 of 4)	CpG	1000	NM_001320274	81849	Hs.149201	NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
0.91515-10	chr5	125854837	125855336	+	0	NA	Intergenic	AluSp|SINE|Alu	54299	NM_001146322	65983	Hs.363558	NM_023927	ENSG00000155324	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
13.1515	chr4	115414779	115415278	+	0	NA	Intergenic	L1PA16|LINE|L1	-104530	NM_001322113	7368	Hs.144197	NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
2.60428-3	chr22	41777321	41777994	+	0	NA	promoter-TSS (NM_003216)	promoter-TSS (NM_003216)	-276	NM_003216	7008	Hs.181159	NM_003216	ENSG00000167074	TEF	-	TEF, PAR bZIP transcription factor	protein-coding
1.63043-12	chr4	181749560	181750059	+	0	NA	Intergenic	Intergenic	330493	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
0.952845-17	chr3	183723708	183724207	+	0	NA	promoter-TSS (NR_046570)	promoter-TSS (NR_046570)	-169	NR_046570	100873982	Hs.570696	NR_046570	ENSG00000223882	ABCC5-AS1	-	ABCC5 antisense RNA 1	ncRNA
1.96543-4	chr1	85930259	85930758	+	0	NA	exon (NM_012137, exon 1 of 6)	exon (NM_012137, exon 1 of 6)	381	NM_012137	23576	Hs.713411	NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
0.783135-4	chr14	104008626	104009125	+	0	NA	Intergenic	Intergenic	13366	NM_152307	115708	Hs.525610	NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
6.57577-7	chr1	155112764	155113263	+	0	NA	promoter-TSS (NM_018973)	promoter-TSS (NM_018973)	-17	NM_153741	54344	Hs.110477	NM_018973	ENSG00000179085	DPM3	CDG1O	dolichyl-phosphate mannosyltransferase subunit 3	protein-coding
0.11441-21	chr16	85394904	85395403	+	0	NA	Intergenic	Intergenic	-55222	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
11.9723	chr17	8042051	8042550	+	0	NA	Intergenic	Intergenic	6089	NR_106943	102465532		NR_106943	ENSG00000179094	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
5.17126-5	chr8	52072245	52072744	+	0	NA	Intergenic	SVA_D|Other|Other	649511	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin like	protein-coding
42.2621	chr13	47196930	47197429	+	0	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	69883	NM_001164211	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
1.37272-13	chr3	146240040	146240539	+	0	NA	intron (NM_021105, intron 5 of 8)	LTR5_Hs|LTR|ERVK	22339	NM_021105	5359	Hs.130759	NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
7.69551-5	chrX	106555711	106556210	+	0	NA	Intergenic	Intergenic	106098	NM_001169154	139212	Hs.128836	NM_173494	ENSG00000080572	PIH1D3	CXorf41|NYSAR97	PIH1 domain containing 3	protein-coding
1.37869-17	chr17	47269139	47269638	+	0	NA	Intergenic	CpG	17355	NM_031498	2793	Hs.181781	NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8	G protein subunit gamma transducin 2	protein-coding
2.35077-6	chr1	35413894	35414393	+	0	NA	Intergenic	SVA_B|Other|Other	-18957	NM_001080418	58512	Hs.733945	NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3	DLG associated protein 3	protein-coding
38.9963	chr4	7896466	7896965	+	0	NA	intron (NM_001134647, intron 1 of 17)	intron (NM_001134647, intron 1 of 17)	-44013	NM_203423	389199	Hs.375210	NM_203423		LOC389199	-	uncharacterized LOC389199	protein-coding
7.77284-2	chr1	229979526	229980025	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-158689	NR_135116	101927532	Hs.40183	NR_135116	ENSG00000228058	LINC01736	-	long intergenic non-protein coding RNA 1736	ncRNA
26.4975-2	chr15	96743844	96744343	+	0	NA	intron (NR_125738, intron 2 of 4)	intron (NR_125738, intron 2 of 4)	-125064	NM_001145155	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
1.40862-11	chr16	69795933	69796432	+	0	NA	promoter-TSS (NM_001270455)	promoter-TSS (NM_001270455)	-5	NM_007014	11060	Hs.408458	NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
29.2082-2	chr3	122384007	122384506	+	0	NA	Intergenic	MER67C|LTR|ERV1	-15416	NM_017554	54625	Hs.518203	NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
0.433514	chr4	72095462	72095961	+	0	NA	intron (NM_001134742, intron 1 of 24)	intron (NM_001134742, intron 1 of 24)	42708	NM_001134742	8671	Hs.5462	NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
1.30182-3	chr3	193855147	193855646	+	0	NA	intron (NM_005524, intron 3 of 3)	CpG-19252	1465	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
7.37549-17	chr5	27242311	27242810	+	0	NA	Intergenic	L1PA16|LINE|L1	-203871	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
2.62013-25	chr1	60230900	60231399	+	0	NA	Intergenic	MIRb|SINE|MIR	-7318	NR_110627	101926944	Hs.720353	NR_110627		LOC101926944	-	uncharacterized LOC101926944	ncRNA
4.04504-2	chr12	9102122	9102829	+	0	NA	promoter-TSS (NM_002355)	promoter-TSS (NM_002355)	-118	NM_001207024	4074	Hs.134084	NM_002355	ENSG00000003056	M6PR	CD-M6PR|CD-MPR|MPR 46|MPR-46|MPR46|SMPR	mannose-6-phosphate receptor, cation dependent	protein-coding
0.291884-9	chr14	105143938	105144662	+	0	NA	promoter-TSS (NR_039860)	promoter-TSS (NR_039860)	-214	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	mir-4710	microRNA 4710	ncRNA
1.53663-23	chr16	88923141	88923640	+	0	NA	promoter-TSS (NM_001318532)	promoter-TSS (NM_001318532)	-12	NM_001323544	2588	Hs.271383	NM_000512	ENSG00000141012	GALNS	GALNAC6S|GAS|GalN6S|MPS4A	galactosamine (N-acetyl)-6-sulfatase	protein-coding
3.16053-4	chr3	129224996	129225495	+	0	NA	intron (NM_001280546, intron 19 of 27)	intron (NM_001280546, intron 19 of 27)	-22237	NM_000539	6010	Hs.247565	NM_000539	ENSG00000163914	RHO	CSNBAD1|OPN2|RP4	rhodopsin	protein-coding
12.1183-5	chr8	123932663	123933162	+	0	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	121751	NM_024295	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
1.49354-9	chr1	248844913	248845412	+	0	NA	exon (NM_001004734, exon 1 of 1)	exon (NM_001004734, exon 1 of 1)	443	NM_001004734	401994	Hs.449973	NM_001004734	ENSG00000189181	OR14I1	OR5BU1|OR5BU1P	olfactory receptor family 14 subfamily I member 1	protein-coding
15.1004-3	chr18	51749653	51750152	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	-1120	NR_002970	677819	Hs.655869	NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
0.990869-15	chr1	65775706	65776205	+	0	NA	intron (NM_001256864, intron 1 of 18)	intron (NM_001256864, intron 1 of 18)	737	NM_001256864	9829	Hs.647643	NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
4.29457-5	chr14	56274017	56274516	+	0	NA	Intergenic	Intergenic	-10874	NR_026797	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
0.400052-13	chr18	9017460	9017959	+	0	NA	Intergenic	Intergenic	-84919	NM_021074	4729	Hs.464572	NM_021074	ENSG00000178127	NDUFV2	CI-24k	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
1.53045-16	chr14	31674840	31675339	+	0	NA	exon (NM_015382, exon 2 of 43)	exon (NM_015382, exon 2 of 43)	1640	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
0.76756-5	chr1	179568681	179569180	+	0	NA	intron (NM_001199089, intron 4 of 17)	Tigger3b|DNA|TcMar-Tigger	-6432	NM_001199092	163589	Hs.197354	NM_173533	ENSG00000162782	TDRD5	TUDOR3	tudor domain containing 5	protein-coding
5.14279	chr1	42886430	42886929	+	0	NA	3' UTR (NM_173642, exon 5 of 5)	3' UTR (NM_173642, exon 5 of 5)	35259	NM_001146192	84217	Hs.294009	NM_032257	ENSG00000066185	ZMYND12	-	zinc finger MYND-type containing 12	protein-coding
1.4691-10	chr21	36262278	36262777	+	0	NA	intron (NM_001754, intron 3 of 8)	CpG	-1540	NM_001122607	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
17.2816	chr3	179384337	179384836	+	0	NA	intron (NM_003940, intron 1 of 20)	intron (NM_003940, intron 1 of 20)	13653	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
1.06238-2	chr15	35837867	35838366	+	0	NA	promoter-TSS (NR_038251)	promoter-TSS (NR_038251)	-280	NR_038251	100507466	Hs.536420	NR_038251	ENSG00000248079	DPH6-AS1	ATPBD4-AS1	DPH6 antisense RNA 1 (head to head)	ncRNA
18.1531	chr1	44030064	44030563	+	0	NA	intron (NM_001329138, intron 6 of 36)	intron (NM_001329138, intron 6 of 36)	33782	NM_130440	5792	Hs.272062	NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase, receptor type F	protein-coding
16.8613-2	chr8	119042988	119043487	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	80821	NM_000127	2131	Hs.492618	NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
0.705811-5	chrX	40943648	40944147	+	0	NA	promoter-TSS (NM_001039590)	promoter-TSS (NM_001039590)	-991	NM_001039591	8239	Hs.77578	NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAM|MRX99|MRXS99F	ubiquitin specific peptidase 9, X-linked	protein-coding
0.888424-46	chr8	26540601	26541100	+	0	NA	Intergenic	SVA_A|Other|Other	104929	NM_001244604	1808	Hs.593187	NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
16.2893-2	chr11	32162266	32162765	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	2943	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
34.2136-2	chr12	55411251	55411750	+	0	NA	Intergenic	Intergenic	-2229	NM_021191	58158	Hs.591024	NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
1.24939	chr1	89357099	89357598	+	0	NA	promoter-TSS (NM_001514)	promoter-TSS (NM_001514)	-47	NM_001514	2959	Hs.481852	NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
0.296531-121	chr9_gl000199_random	80555	81054	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.213631-5	chr15	93237238	93237737	+	0	NA	Intergenic	Intergenic	-38456	NM_207446	400451	Hs.27373	NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding
0.51587-7	chr6	15221993	15222492	+	0	NA	Intergenic	Intergenic	-23964	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
1.4752-3	chr3	161571853	161572352	+	0	NA	Intergenic	L1PBa1|LINE|L1	357506	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
1.53663-41	chr1	177001541	177002040	+	0	NA	exon (NM_004319, exon 3 of 23)	exon (NM_004319, exon 3 of 23)	-3209	NR_030163	574441		NR_030163	ENSG00000202609	MIR488	MIRN488|hsa-mir-488|mir-488	microRNA 488	ncRNA
0.472076-21	chr3	157156073	157156572	+	0	NA	intron (NM_002852, intron 2 of 2)	intron (NM_002852, intron 2 of 2)	1742	NM_002852	5806	Hs.591286	NM_002852	ENSG00000163661	PTX3	TNFAIP5|TSG-14	pentraxin 3	protein-coding
1.19186-15	chr16	21566028	21566527	+	0	NA	Intergenic	Intergenic	-34512	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
9.50782-9	chr18	77748028	77748883	+	0	NA	non-coding (NR_131177, exon 1 of 2)	non-coding (NR_131177, exon 1 of 2)	137	NM_001303471	10907	Hs.465498	NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
0.204516-7	chr12	81470988	81471487	+	0	NA	promoter-TSS (NM_001330243)	promoter-TSS (NM_001330243)	-560	NM_001330242	79611	Hs.259559	NM_024560	ENSG00000111058	ACSS3	-	acyl-CoA synthetase short-chain family member 3	protein-coding
22.6043-2	chr1	183257928	183258427	+	0	NA	intron (NM_170706, intron 4 of 10)	intron (NM_170706, intron 4 of 10)	15832	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
2.66803-5	chr7	50599279	50599778	+	0	NA	promoter-TSS (NR_033845)	promoter-TSS (NR_033845)	71	NR_033845	100129427	Hs.680434	NR_033845	ENSG00000226122	DDC-AS1	-	DDC antisense RNA 1	ncRNA
0.132283-14	chr7	140714549	140715048	+	0	NA	promoter-TSS (NM_016071)	promoter-TSS (NM_016071)	-17	NM_053035	51650	Hs.416207	NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt	mitochondrial ribosomal protein S33	protein-coding
20.5948	chr20	24699583	24700082	+	0	NA	Intergenic	Intergenic	-230034	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
8.41638	chr20	30134885	30135384	+	0	NA	intron (NM_178580, intron 4 of 12)	CpG	25932	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
0.861861-9	chr21	46020574	46021773	+	0	NA	exon (NM_198689, exon 2 of 2)	exon (NM_198689, exon 2 of 2)	676	NM_198689	386675	Hs.473999	NM_198689	ENSG00000272804	KRTAP10-7	KAP10.7|KAP18.7|KRTAP18-7	keratin associated protein 10-7	protein-coding
15.817	chr16	19707517	19708016	+	0	NA	intron (NM_001300743, intron 26 of 27)	intron (NM_001300743, intron 26 of 27)	-20012	NM_001305121	124152	Hs.460217	NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
1.33713-5	chrX	71526665	71527164	+	0	NA	promoter-TSS (NM_004143)	promoter-TSS (NM_004143)	-77	NM_004143	4435	Hs.40403	NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
2.43364-24	chr3	142314353	142314852	+	0	NA	promoter-TSS (NM_001145319)	promoter-TSS (NM_001145319)	-627	NM_001145319	5357	Hs.203637	NM_002670	ENSG00000120756	PLS1	-	plastin 1	protein-coding
1.11821-26	chr2	186088340	186088839	+	0	NA	Intergenic	Charlie10b|DNA|hAT-Charlie	-56790	NR_136319	105373782	Hs.128285	NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
1.19186-33	chr10	80210631	80211130	+	0	NA	Intergenic	Intergenic	183795	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
13.279-6	chr2	211760247	211760746	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	278201	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
40.5601	chr21	11098744	11099243	+	0	NA	promoter-TSS (NM_181704)	promoter-TSS (NM_181704)	-56	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
0.0130484-43	chr16	57880195	57880694	+	0	NA	Intergenic	Intergenic	35895	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
24.7496	chr6	125589153	125589652	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	33880	NM_016063	51020	Hs.32826	NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
0.604807-5	chr1	112533253	112533752	+	0	NA	5' UTR (NM_001270945, exon 1 of 2)	5' UTR (NM_001270945, exon 1 of 2)	312	NM_001270945	643355	Hs.279714	NM_001270945		LINC01750	-	long intergenic non-protein coding RNA 1750	protein-coding
12.2841-3	chr18	56806788	56807287	+	0	NA	promoter-TSS (NM_001307941)	promoter-TSS (NM_001307941)	-52	NM_001307941	90701	Hs.45107	NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
5.80044-10	chr8	143690319	143690818	+	0	NA	Intergenic	Intergenic	5265	NM_015193	23237	Hs.40888	NM_015193	ENSG00000198576	ARC	Arg3.1	activity regulated cytoskeleton associated protein	protein-coding
12.4489	chrX	133852306	133852805	+	0	NA	intron (NM_001316888, intron 1 of 2)	intron (NM_001316888, intron 1 of 2)	15111	NM_001316888	10761	Hs.496811	NM_021796	ENSG00000170965	PLAC1	CT92|OOSP2L	placenta specific 1	protein-coding
7.72113-14	chr1	50483114	50483613	+	0	NA	intron (NM_001323573, intron 1 of 12)	L1PA15|LINE|L1	6263	NM_001323573	84871	Hs.551844	NM_032785	ENSG00000186094	AGBL4	CCP6	ATP/GTP binding protein like 4	protein-coding
6.81937-8	chr8	110656085	110656584	+	0	NA	promoter-TSS (NM_001099756)	promoter-TSS (NM_001099756)	-10	NM_001317989	100132813	Hs.390738	NM_001317989		LOC100132813	-	uncharacterized LOC100132813	protein-coding
2.0204-6	chr1	66194966	66195465	+	0	NA	Intergenic	Intergenic	-62978	NM_001037341	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
3.26058-2	chr9	138370629	138371128	+	0	NA	promoter-TSS (NM_014811)	promoter-TSS (NM_014811)	-770	NM_014811	9858	Hs.533260	NM_014811	ENSG00000196422	PPP1R26	KIAA0649|NRBE3	protein phosphatase 1 regulatory subunit 26	protein-coding
12.8988-3	chr10	121651903	121652402	+	0	NA	promoter-TSS (NM_007190)	promoter-TSS (NM_007190)	67	NR_037771	11196	Hs.435004	NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A	SEC23 interacting protein	protein-coding
1.09579-24	chr7	129648749	129649248	+	0	NA	Intergenic	Intergenic	42293	NM_001282191	51530	Hs.194157	NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
1.20904-13	chr6	161339754	161340253	+	0	NA	Intergenic	Intergenic	-72756	NM_006724	4216	Hs.390428	NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
1.28427-4	chr5	90490786	90491285	+	0	NA	Intergenic	Intergenic	119184	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
4.44906-11	chr17	21178961	21179643	+	0	NA	Intergenic	CpG	-8666	NM_001316332	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
14.2251-4	chr2	19975057	19975556	+	0	NA	Intergenic	Intergenic	-93309	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
0.79355-5	chr1	3632880	3633379	+	0	NA	intron (NM_001126242, intron 2 of 10)	intron (NM_001126242, intron 2 of 10)	18519	NM_001204192	7161	Hs.192132	NM_005427	ENSG00000078900	TP73	P73	tumor protein p73	protein-coding
5.21434-9	chrX	13893509	13894008	+	0	NA	intron (NM_001318729, intron 1 of 6)	L1MB5|LINE|L1	-58280	NM_001001996	2824	Hs.495710	NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
12.5414	chrX	146407885	146408384	+	0	NA	Intergenic	Intergenic	-41888	NR_030239	574517		NR_030239	ENSG00000207866	MIR514A2	MIR514-2|MIRN514-2|hsa-mir-514a-2	microRNA 514a-2	ncRNA
10.5453	chr4_gl000193_random	87052	87551	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	1074	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
3.15155-5	chr14	89837689	89838188	+	0	NA	intron (NM_001085471, intron 2 of 6)	LTR33|LTR|ERVL	45516	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
1.40862-5	chr1	35384353	35384852	+	0	NA	intron (NM_001080418, intron 1 of 11)	(TCTCC)n|Simple_repeat|Simple_repeat	10584	NM_001080418	58512	Hs.733945	NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3	DLG associated protein 3	protein-coding
9.46922-3	chr12	123450986	123451485	+	0	NA	promoter-TSS (NM_019624)	promoter-TSS (NM_019624)	-179	NM_203444	23457	Hs.511951	NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
13.0892-3	chr9	11458357	11458856	+	0	NA	Intergenic	Intergenic	845400	NR_110696	101929428	Hs.434446	NR_110696	ENSG00000226717	PTPRD-AS2	-	PTPRD antisense RNA 2 (head to head)	ncRNA
1.31356-2	chr11	63580523	63581022	+	0	NA	promoter-TSS (NM_138471)	promoter-TSS (NM_138471)	-74	NM_138471	144097	Hs.502793	NM_138471	ENSG00000168005	C11orf84	-	chromosome 11 open reading frame 84	protein-coding
4.36519-6	chr15	69278672	69279171	+	0	NA	intron (NR_033671, intron 2 of 16)	intron (NR_033671, intron 2 of 16)	-28113	NM_001184779	79400	Hs.657932	NM_024505	ENSG00000255346	NOX5	-	NADPH oxidase 5	protein-coding
1.6877-13	chr12	51157467	51157966	+	0	NA	promoter-TSS (NM_005171)	promoter-TSS (NM_005171)	-73	NM_005171	466	Hs.648565	NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
1.76526-6	chr19	34663065	34663564	+	0	NA	promoter-TSS (NM_015578)	promoter-TSS (NM_015578)	-38	NM_001114093	26065	Hs.744009	NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, mRNA processing body assembly factor	protein-coding
23.4199	chr12	31379525	31380414	+	0	NA	Intergenic	Intergenic	-97281	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
2.29148-20	chr11	12264929	12265428	+	0	NA	intron (NR_144420, intron 20 of 27)	intron (NR_144420, intron 20 of 27)	-43269	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
0.245682-16	chr3	115533565	115534064	+	0	NA	intron (NM_002338, intron 6 of 6)	intron (NM_002338, intron 6 of 6)	191663	NM_001130064	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
2.97569-9	chr7	1543889	1544388	+	0	NA	promoter-TSS (NM_001080453)	promoter-TSS (NM_001080453)	-120	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
1.52427-22	chr12	90101842	90102341	+	0	NA	promoter-TSS (NR_028138)	promoter-TSS (NR_028138)	-641	NR_028138	338758	Hs.601766	NR_028138	ENSG00000271614	ATP2B1-AS1	LINC00936	ATP2B1 antisense RNA 1	ncRNA
0.296531-110	chr8	128584441	128584940	+	0	NA	Intergenic	L1MA7|LINE|L1	-90306	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
1.07905-2	chr1	11795840	11796339	+	0	NA	promoter-TSS (NM_020350)	promoter-TSS (NM_020350)	-53	NM_001040197	57085	Hs.464438	NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
0.319843-8	chr12	117348517	117349016	+	0	NA	promoter-TSS (NM_012174)	promoter-TSS (NM_012174)	5	NM_012174	26259	Hs.624537	NM_012174	ENSG00000174989	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
0.0305075-19	chr21	45759052	45759551	+	0	NA	promoter-TSS (NM_001271440)	promoter-TSS (NM_001271440)	-16	NM_004928	755	Hs.517331	NM_004928	ENSG00000160226	C21orf2	LRRC76|YF5/A2	chromosome 21 open reading frame 2	protein-coding
1.19186-32	chr2	74734259	74734758	+	0	NA	intron (NM_032673, intron 1 of 8)	CpG	313	NM_032673	84759	Hs.316750	NM_032673	ENSG00000115289	PCGF1	2010002K04Rik|NSPC1|RNF3A-2|RNF68	polycomb group ring finger 1	protein-coding
5.22879-2	chrX	118616474	118616973	+	0	NA	Intergenic	CpG	-13640	NR_028443	100303728	Hs.714405	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
2.55707-5	chr11	117856566	117857065	+	0	NA	promoter-TSS (NR_026691)	promoter-TSS (NR_026691)	-291	NM_001558	3587	Hs.504035	NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
7.18967-6	chr2	39883657	39884156	+	0	NA	Intergenic	L1PA8|LINE|L1	-8732	NM_001167959	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
0.245682-4	chr5	150537108	150537607	+	0	NA	promoter-TSS (NM_001155)	promoter-TSS (NM_001155)	86	NM_001155	309	Hs.412117	NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68	annexin A6	protein-coding
1.45694-17	chr1	184951125	184951624	+	0	NA	Intergenic	Intergenic	-7656	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
17.122-9	chr2	165766573	165767421	+	0	NA	intron (NM_001199148, intron 9 of 10)	intron (NM_001199148, intron 9 of 10)	45038	NM_173512	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
4.02305-12	chr16	56225398	56225897	+	0	NA	promoter-TSS (NR_027078)	promoter-TSS (NR_027078)	396	NM_138736	2775	Hs.644524	NM_020988	ENSG00000087258	GNAO1	EIEE17|G-ALPHA-o|GNAO|HLA-DQB1	G protein subunit alpha o1	protein-coding
5.54396-4	chr2	42240839	42241338	+	0	NA	Intergenic	SVA_D|Other|Other	-34073	NM_138370	91461	Hs.408542	NM_138370	ENSG00000162878	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
1.32533-3	chr3	153644	154143	+	0	NA	Intergenic	MER61B|LTR|ERV1	-84386	NM_006614	10752	Hs.148909	NM_006614	ENSG00000134121	CHL1	CALL|L1CAM2	cell adhesion molecule L1 like	protein-coding
3.63512-7	chr11	64808502	64809001	+	0	NA	TTS (NR_037650)	TTS (NR_037650)	375	NM_013299	29901	Hs.23642	NM_013299	ENSG00000168061	SAC3D1	HSU79266|SHD1	SAC3 domain containing 1	protein-coding
3.8405-25	chr16	88717293	88717792	+	0	NA	promoter-TSS (NM_000101)	promoter-TSS (NM_000101)	-50	NM_000101	1535	Hs.513803	NM_000101	ENSG00000051523	CYBA	p22-PHOX	cytochrome b-245 alpha chain	protein-coding
0.0921731-26	chr11	66079229	66079728	+	0	NA	Intergenic	CpG	5037	NM_020404	57124	Hs.195727	NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
0.209071-29	chr20	60982454	60982953	+	0	NA	promoter-TSS (NM_031215)	promoter-TSS (NM_031215)	-364	NM_031215	81928	Hs.301040	NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
0.952845-6	chr17	7785226	7785725	+	0	NA	intron (NM_001330111, intron 2 of 4)	intron (NM_001330111, intron 2 of 4)	-2648	NM_001005271	1107	Hs.25601	NM_005852	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
12.4109	chr1	31688807	31689306	+	0	NA	intron (NM_024522, intron 1 of 6)	intron (NM_024522, intron 1 of 6)	23678	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Sodium/potassium transporting ATPase interacting 1	protein-coding
0.070049-50	chr2	88844663	88845162	+	0	NA	intron (NR_110236, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	6674	NR_110236	101928371	Hs.738045	NR_110236	ENSG00000225420	LOC101928371	-	uncharacterized LOC101928371	ncRNA
4.90797-5	chr12	67734412	67734911	+	0	NA	Intergenic	SVA_B|Other|Other	71600	NM_001329674	55832	Hs.546407	NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
1.16339-14	chr12	131232610	131233109	+	0	NA	Intergenic	Intergenic	90960	NM_194356	2054	Hs.437585	NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
24.034-3	chr11	126926168	126926667	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-10480	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
0.604807-7	chr20	47894525	47895024	+	0	NA	promoter-TSS (NR_003604)	promoter-TSS (NR_003604)	-18	NM_021035	57169	Hs.371794	NM_021035	ENSG00000124201	ZNFX1	-	zinc finger NFX1-type containing 1	protein-coding
2.53366-4	chr8	62621020	62621519	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	5930	NM_001164756	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
0.163737-18	chr7	36312916	36313415	+	0	NA	intron (NM_030636, intron 3 of 7)	intron (NM_030636, intron 3 of 7)	93617	NM_001199707	23366	Hs.6224	NM_015314	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
0.94744-17	chr3	153839750	153840249	+	0	NA	promoter-TSS (NR_037901)	promoter-TSS (NR_037901)	850	NM_001251963	26084	Hs.240845	NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
4.7237-15	chr7	44255061	44256036	+	0	NA	Intergenic	Intergenic	14970	NM_006555	10652	Hs.520794	NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding
0.419142-38	chr8	123793320	123793819	+	0	NA	promoter-TSS (NM_014943)	promoter-TSS (NM_014943)	-332	NM_014943	22882	Hs.377090	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
2.19683-6	chr3	169996454	169996953	+	0	NA	intron (NM_002740, intron 8 of 17)	MSTB|LTR|ERVL-MaLR	56483	NM_002740	5584	Hs.478199	NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
3.13364-4	chr18	9707943	9708442	+	0	NA	promoter-TSS (NM_006868)	promoter-TSS (NM_006868)	-36	NM_006868	11031	Hs.99528	NM_006868	ENSG00000168461	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
6.96804-3	chr1	181057532	181058031	+	0	NA	5' UTR (NM_016545, exon 1 of 1)	5' UTR (NM_016545, exon 1 of 1)	143	NM_016545	51278	Hs.15725	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
1.45087-24	chr19	8372745	8373244	+	0	NA	TTS (NR_135539)	TTS (NR_135539)	246	NM_016579	51293	Hs.558499	NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR	CD320 molecule	protein-coding
3.15155-16	chr5	36688794	36689293	+	0	NA	TTS (NM_004172)	TTS (NM_004172)	82586	NM_001289940	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
0.952845-12	chr1	84672020	84672519	+	0	NA	intron (NM_001242862, intron 7 of 8)	MER68|LTR|ERVL	24954	NM_001242862	5567	Hs.487325	NM_002731	ENSG00000142875	PRKACB	PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
2.29148-2	chr10	88731055	88731554	+	0	NA	TTS (NM_006829)	TTS (NM_006829)	806	NM_133447	119385	Hs.511787	NM_133447		AGAP11	-	ArfGAP with GTPase domain, ankyrin repeat and PH domain 11	protein-coding
0.0833099-44	chr3	172195040	172195539	+	0	NA	Intergenic	Intergenic	-29043	NM_198407	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	GHDP	growth hormone secretagogue receptor	protein-coding
0.163737-13	chr1	180393862	180394361	+	0	NA	intron (NM_032360, intron 4 of 7)	intron (NM_032360, intron 4 of 7)	13414	NR_036067	100423032		NR_036067	ENSG00000265435	MIR3121	mir-3121	microRNA 3121	ncRNA
10.4528-2	chr2	3439170	3439669	+	0	NA	intron (NM_016030, intron 5 of 11)	intron (NM_016030, intron 5 of 11)	55973	NM_016030	51112	Hs.252713	NM_016030	ENSG00000171853	TRAPPC12	CGI-87|TTC-15|TTC15	trafficking protein particle complex 12	protein-coding
23.1247	chr15	101998972	101999471	+	0	NA	intron (NM_138322, intron 2 of 10)	intron (NM_138322, intron 2 of 10)	30966	NM_138323	5046	Hs.498494	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
29.6257-4	chr12	101632062	101632561	+	0	NA	Intergenic	L1ME3A|LINE|L1	-28295	NM_145913	160728	Hs.444536	NM_145913	ENSG00000256870	SLC5A8	AIT|SMCT|SMCT1	solute carrier family 5 member 8	protein-coding
0.101054-23	chr6	137538944	137539443	+	0	NA	intron (NM_000416, intron 1 of 6)	intron (NM_000416, intron 1 of 6)	1374	NM_000416	3459	Hs.520414	NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
2.94136-7	chr2	97968092	97968591	+	0	NA	Intergenic	AluJb|SINE|Alu	18669	NR_103733	100506076	Hs.732616	NR_103732		LOC100506076	-	uncharacterized LOC100506076	ncRNA
0.952845-18	chr21	44393992	44394491	+	0	NA	promoter-TSS (NM_001320694)	promoter-TSS (NM_001320694)	-379	NM_004571	5316	Hs.431043	NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
6.88246-5	chr6	74230036	74230851	+	0	NA	intron (NM_001402, intron 1 of 7)	CpG	312	NM_001402	1915	Hs.535192	NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
13.4872	chr13	104446049	104446548	+	0	NA	Intergenic	Intergenic	368748	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
0.168249-20	chr1	110316134	110316633	+	0	NA	Intergenic	Intergenic	-9739	NM_001319952	79574	Hs.485352	NM_024526	ENSG00000198758	EPS8L3	EPS8R3	EPS8 like 3	protein-coding
0.736576-35	chr2	175113140	175113639	+	0	NA	promoter-TSS (NM_013341)	promoter-TSS (NM_013341)	9	NM_001328688	29789	Hs.157351	NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
0.856568-19	chr3	134513758	134514257	+	0	NA	promoter-TSS (NM_004441)	promoter-TSS (NM_004441)	-92	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
4.27128-4	chr15	42893020	42893519	+	0	NA	intron (NM_020759, intron 3 of 32)	SVA_B|Other|Other	25412	NM_020759	57519	Hs.122061	NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
1.29596-13	chr1	33350660	33351159	+	0	NA	Intergenic	L2a|LINE|L2	-1189	NM_002143	3208	Hs.632391	NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
4.73661-5	chr15	64208610	64209109	+	0	NA	intron (NM_014326, intron 9 of 11)	intron (NM_014326, intron 9 of 11)	-11614	NR_120344	101928988	Hs.673214	NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
1.35489-34	chr9	33170785	33171284	+	0	NA	intron (NR_108108, intron 1 of 3)	intron (NR_108108, intron 1 of 3)	3177	NR_108108	101929639	Hs.545818	NR_108108	ENSG00000233554	B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
18.962	chr14	63974679	63975178	+	0	NA	promoter-TSS (NM_001282181)	promoter-TSS (NM_001282181)	28	NM_001282181	5529	Hs.334868	NM_006246	ENSG00000154001	PPP2R5E	-	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
5.70248-10	chr1	234679544	234680043	+	0	NA	Intergenic	Intergenic	-12268	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
1.17475-6	chr1	162633232	162633731	+	0	NA	intron (NM_006182, intron 2 of 17)	intron (NM_006182, intron 2 of 17)	31253	NM_006182	4921	Hs.275757	NM_006182	ENSG00000162733	DDR2	MIG20a|NTRKR3|TKT|TYRO10	discoidin domain receptor tyrosine kinase 2	protein-coding
1.58641-2	chr16	67219061	67219560	+	0	NA	exon (NM_178516, exon 10 of 14)	exon (NM_178516, exon 10 of 14)	-1427	NM_001040715	653319	Hs.651201	NM_001040715	ENSG00000196123	KIAA0895L	-	KIAA0895 like	protein-coding
0.438316-25	chr12	133287033	133287532	+	0	NA	promoter-TSS (NM_138575)	promoter-TSS (NM_138575)	-111	NM_001170544	192111	Hs.102558	NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
0.462403-8	chr2	100187821	100188320	+	0	NA	intron (NM_001025108, intron 17 of 23)	intron (NM_001025108, intron 17 of 23)	-81552	NM_016316	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
6.30784-7	chr18	13605472	13605971	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	-5392	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
1.29011-22	chr5	14124156	14124655	+	0	NA	Intergenic	LTR79|LTR|ERVL	-19406	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
0.510982-16	chr7	131206302	131206801	+	0	NA	intron (NM_001018111, intron 1 of 8)	intron (NM_001018111, intron 1 of 8)	34825	NM_001018111	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
4.42493	chr3	105546788	105547287	+	0	NA	intron (NR_135810, intron 3 of 20)	MLT1J|LTR|ERVL-MaLR	39398	NM_001321813	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
0.163737-35	chr2	90276665	90277164	+	0	NA	Intergenic	Intergenic	1165030	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
1.61151-10	chr10	126711769	126712268	+	0	NA	intron (NM_001083914, intron 3 of 10)	CpG	4435	NM_022802	1488	Hs.501345	NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
0.2365-14	chr7	83150026	83150525	+	0	NA	intron (NM_012431, intron 1 of 16)	intron (NM_012431, intron 1 of 16)	120472	NM_001178129	9723	Hs.528721	NM_012431	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	semaphorin 3E	protein-coding
8.09668-2	chr2	114734489	114734988	+	0	NA	TTS (NR_034130)	TTS (NR_034130)	-2408	NR_034128	440900	Hs.662205	NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
1.69411-3	chr22	36687253	36687752	+	0	NA	intron (NM_002473, intron 31 of 40)	SVA_D|Other|Other	-4549	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
0.741724-17	chr1	68698467	68698966	+	0	NA	promoter-TSS (NM_001002292)	promoter-TSS (NM_001002292)	-432	NM_024911	79971	Hs.647659	NM_024911	ENSG00000116729	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
1.52427-6	chr11	93276274	93276773	+	0	NA	promoter-TSS (NM_020179)	promoter-TSS (NM_020179)	23	NM_020179	56935	Hs.438064	NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
8.06875-9	chr8	141351991	141352490	+	0	NA	intron (NM_031466, intron 9 of 22)	intron (NM_031466, intron 9 of 22)	115621	NM_001160372	83696	Hs.654911	NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex 9	protein-coding
0.101054-40	chr20	37590699	37591198	+	0	NA	promoter-TSS (NM_021931)	promoter-TSS (NM_021931)	-33	NM_001190809	60625	Hs.444520	NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
7.56962-2	chr1	60140316	60140815	+	0	NA	intron (NM_001278224, intron 8 of 9)	MIR|SINE|MIR	58403	NR_039861	100616409		NR_039861	ENSG00000266150	MIR4711	-	microRNA 4711	ncRNA
1.35489-6	chr1	145209676	145210175	+	0	NA	intron (NM_203458, intron 1 of 4)	CpG	812	NM_203458	388677	Hs.655156	NM_203458	ENSG00000264343	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
6.45892	chr6	167814936	167815435	+	0	NA	Intergenic	Intergenic	-17187	NM_004610	6953	Hs.351	NM_004610	ENSG00000203690	TCP10	TCP10A	t-complex 10	protein-coding
11.1182-2	chr13	45626435	45626934	+	0	NA	Intergenic	Intergenic	-53730	NR_120424	101929259	Hs.638490	NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
10.5998-2	chr2	191417998	191418497	+	0	NA	Intergenic	MIRc|SINE|MIR	-18779	NM_001142645	100131211	Hs.659824	NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
8.50781-10	chr10	59489306	59489805	+	0	NA	Intergenic	L1PA16|LINE|L1	-425236	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	ncRNA
0.172766-25	chr11	86170679	86171178	+	0	NA	intron (NM_001014811, intron 7 of 13)	intron (NM_001014811, intron 7 of 13)	85150	NM_001156474	60494	Hs.144913	NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
0.91515-11	chr11	102980310	102980809	+	0	NA	intron (NM_001377, intron 1 of 88)	intron (NM_001377, intron 1 of 88)	399	NM_001080463	79659	Hs.503721	NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
1.41463-3	chr2	254222	254721	+	0	NA	intron (NM_001282682, intron 1 of 10)	intron (NM_001282682, intron 1 of 10)	1869	NM_001282687	26751	Hs.515951	NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
1.09579-17	chr2	86026705	86027204	+	0	NA	Intergenic	Intergenic	-15299	NR_038888	284950	Hs.570227	NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
0.510982-5	chr2	129124134	129124633	+	0	NA	Intergenic	Intergenic	-48212	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
10.1909	chr5	60792199	60792698	+	0	NA	intron (NM_020928, intron 4 of 13)	intron (NM_020928, intron 4 of 13)	-141160	NR_126524	285668	Hs.683866	NM_173667	ENSG00000178722	C5orf64	-	chromosome 5 open reading frame 64	protein-coding
9.58607-3	chr14	64805330	64805829	+	0	NA	promoter-TSS (NR_073496)	promoter-TSS (NR_073496)	-311	NM_001291712	2100	Hs.660607	NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2	estrogen receptor 2	protein-coding
11.2263	chr15	86042667	86043166	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	119069	NM_006738	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
0.00434512-9	chr1	234655226	234655725	+	0	NA	Intergenic	MER50|LTR|ERV1	12050	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
28.3863-4	chr3	122815508	122816007	+	0	NA	intron (NM_006810, intron 3 of 16)	intron (NM_006810, intron 3 of 16)	29901	NM_006810	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
3.69572-4	chr2	240964564	240965063	+	0	NA	promoter-TSS (NM_001322020)	promoter-TSS (NM_001322020)	6	NR_136156	4705	Hs.277677	NM_004544	ENSG00000130414	NDUFA10	CI-42KD|CI-42k	NADH:ubiquinone oxidoreductase subunit A10	protein-coding
3.47754-4	chr3	143363191	143363690	+	0	NA	intron (NM_173653, intron 6 of 15)	intron (NM_173653, intron 6 of 15)	203933	NM_173653	285195	Hs.302257	NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
0.209071-12	chr2	163286777	163287276	+	0	NA	intron (NM_173162, intron 7 of 7)	L1ME1|LINE|L1	86135	NM_001330271	25801	Hs.377894	NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
29.5078	chr2	168541201	168541700	+	0	NA	Intergenic	Intergenic	-133732	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	beta-1,3-galactosyltransferase 1	protein-coding
12.5181	chr6	41286421	41286920	+	0	NA	Intergenic	Intergenic	-16858	NM_001199510	9436	Hs.194721	NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
3.91474-8	chr9	88419854	88420353	+	0	NA	promoter-TSS (NR_029410)	promoter-TSS (NR_029410)	-814	NR_029410	389765	Hs.715986	NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
0.190881-9	chr2	40006097	40006596	+	0	NA	promoter-TSS (NM_001321468)	promoter-TSS (NM_001321468)	70	NM_001321480	80745	Hs.468254	NM_025264	ENSG00000138050	THUMPD2	C2orf8	THUMP domain containing 2	protein-coding
1.34896-4	chr3	170254515	170255014	+	0	NA	intron (NM_020949, intron 1 of 7)	intron (NM_020949, intron 1 of 7)	49099	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding
7.85156-13	chr17	18936733	18937232	+	0	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	13354	NM_006613	10750	Hs.567416	NM_006613	ENSG00000154016	GRAP	-	GRB2-related adaptor protein	protein-coding
3.66532-7	chr1	76252054	76252553	+	0	NA	promoter-TSS (NR_003042)	promoter-TSS (NR_003042)	424	NM_004582	5876	Hs.78948	NM_004582	ENSG00000137955	RABGGTB	GGTB	Rab geranylgeranyltransferase beta subunit	protein-coding
0.428718-29	chr14	91825653	91826152	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	58286	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
1.45694-5	chr2	120233789	120234288	+	0	NA	intron (NM_002980, intron 3 of 12)	MamGypLTR3|LTR|Gypsy	44592	NM_183240	140738	Hs.26216	NM_183240	ENSG00000171227	TMEM37	PR|PR1	transmembrane protein 37	protein-coding
6.30784-4	chr6	156260243	156260742	+	0	NA	Intergenic	Intergenic	-7439	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
5.05845-5	chr6	80521845	80522344	+	0	NA	promoter-TSS (NR_131786)	promoter-TSS (NR_131786)	-131	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
6.55608-16	chr18	984052	984551	+	0	NA	Intergenic	L2b|LINE|L2	79104	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
2.96709-9	chr7	73447616	73448115	+	0	NA	intron (NM_001278939, intron 1 of 33)	intron (NM_001278939, intron 1 of 33)	5746	NM_001081754	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
1.7134	chr7	86920507	86921006	+	0	NA	Intergenic	L1PA15|LINE|L1	54052	NR_015381	11257	Hs.274329	NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1	TP53 target 1 (non-protein coding)	ncRNA
1.67491-31	chr8	134246837	134247336	+	0	NA	Intergenic	Intergenic	43804	NM_003882	8840	Hs.492974	NM_003882	ENSG00000104415	WISP1	CCN4|WISP1c|WISP1i|WISP1tc	WNT1 inducible signaling pathway protein 1	protein-coding
6.6354-3	chr13	114444830	114445329	+	0	NA	Intergenic	Intergenic	8983	NR_028064	100130386	Hs.704121	NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
3.8405-7	chr7	123262697	123263196	+	0	NA	intron (NR_111922, intron 2 of 4)	intron (NR_111922, intron 2 of 4)	2065	NR_111922	102724555	Hs.83916	NR_111922	ENSG00000230442	LOC102724555	-	uncharacterized LOC102724555	ncRNA
1.53663-25	chr12	78604629	78605128	+	0	NA	3' UTR (NM_001024383, exon 40 of 40)	3' UTR (NM_001024383, exon 40 of 40)	148648	NR_135021	105369860	Hs.156898	NR_135021	ENSG00000258220	LOC105369860	-	uncharacterized LOC105369860	ncRNA
0.362122-11	chr6	134175998	134176497	+	0	NA	intron (NR_109982, intron 1 of 8)	intron (NR_109982, intron 1 of 8)	33897	NR_109982	100507308	Hs.102408	NR_109982	ENSG00000227954	TARID	EYA4-AS1	TCF21 antisense RNA inducing promoter demethylation	ncRNA
0.80399	chr10	99160855	99161354	+	0	NA	promoter-TSS (NM_001145114)	promoter-TSS (NM_001145114)	23	NM_001284337	23223	Hs.434251	NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
3.93619-9	chr8	144349297	144349796	+	0	NA	promoter-TSS (NM_138465)	promoter-TSS (NM_138465)	-61	NM_138465	2738	Hs.400533	NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
9.06578-2	chr8	61198526	61199025	+	0	NA	Intergenic	Intergenic	-4793	NM_001321837	767	Hs.654388	NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
0.675262-31	chr11	124538984	124539483	+	0	NA	intron (NM_170601, intron 2 of 9)	intron (NM_170601, intron 2 of 9)	-4507	NM_017425	53340	Hs.286233	NM_017425	ENSG00000064199	SPA17	CT22|SP17|SP17-1	sperm autoantigenic protein 17	protein-coding
2.18963-16	chr16	83841417	83841916	+	0	NA	5' UTR (NM_001537, exon 1 of 4)	5' UTR (NM_001537, exon 1 of 4)	158	NM_001537	3281	Hs.250899	NM_001537	ENSG00000230989	HSBP1	NPC-A-13	heat shock factor binding protein 1	protein-coding
0.888424-14	chr4	188100720	188101219	+	0	NA	Intergenic	Intergenic	325798	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	ncRNA
9.70616-3	chr7	99025254	99025753	+	0	NA	intron (NM_001198879, intron 6 of 8)	SVA_D|Other|Other	10959	NM_015545	26024	Hs.632313	NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
7.61954-26	chr14	69178048	69178547	+	0	NA	Intergenic	Intergenic	82334	NM_004926	677	Hs.85155	NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
18.0967-4	chr5	168203087	168203586	+	0	NA	intron (NM_003062, intron 12 of 35)	intron (NM_003062, intron 12 of 35)	-8076	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
2.73273-5	chr14	102780359	102780858	+	0	NA	Intergenic	Intergenic	-3106	NM_001267827	55778	Hs.743359	NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
1.16907	chr7	97881291	97881790	+	0	NA	promoter-TSS (NM_015395)	promoter-TSS (NM_015395)	23	NM_015395	25851	Hs.592281	NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
17.1897-2	chrX	9856196	9856695	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-23967	NM_001320663	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
12.8819-2	chr5	70681940	70682439	+	0	NA	TTS (NR_003922)	TTS (NR_003922)	10577	NR_003922	5370	Hs.742169	NM_031888	ENSG00000169040	PMCHL2	-	pro-melanin concentrating hormone like 2 (pseudogene)	pseudo
2.43364-3	chr12	69004193	69004692	+	0	NA	promoter-TSS (NM_001251917)	promoter-TSS (NM_001251917)	-177	NM_001251918	5908	Hs.369920	NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B	RAP1B, member of RAS oncogene family	protein-coding
6.07303	chr1	173159427	173160140	+	0	NA	intron (NM_003326, intron 1 of 2)	intron (NM_003326, intron 1 of 2)	14914	NM_001297562	7292	Hs.181097	NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	tumor necrosis factor superfamily member 4	protein-coding
1.61781-2	chr9	136707276	136707775	+	0	NA	intron (NM_001134398, intron 3 of 29)	intron (NM_001134398, intron 3 of 29)	-102448	NM_007101	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
0.254883-43	chr5	37296312	37296811	+	0	NA	intron (NM_153485, intron 32 of 34)	SVA_D|Other|Other	-47031	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	Hug|JBTS17|OFD6	chromosome 5 open reading frame 42	protein-coding
0.80399-9	chr17	62051640	62052139	+	0	NA	Intergenic	Intergenic	-1611	NM_000334	6329	Hs.46038	NM_000334	ENSG00000007314	SCN4A	CMS16|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
0.0877392-4	chr16	49735953	49736891	+	0	NA	intron (NM_001271620, intron 3 of 7)	intron (NM_001271620, intron 3 of 7)	-38280	NM_001330533	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
6.32644	chr7	106842201	106842700	+	0	NA	3' UTR (NM_006348, exon 22 of 22)	3' UTR (NM_006348, exon 22 of 22)	32990	NM_012257	26959	Hs.162032	NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
0.0877392-44	chr3	49055706	49056205	+	0	NA	promoter-TSS (NM_001009996)	promoter-TSS (NM_001009996)	86	NM_001009996	55152	Hs.654815	NM_018114	ENSG00000178149	DALRD3	-	DALR anticodon binding domain containing 3	protein-coding
0.496351-50	chr12	103942283	103942782	+	0	NA	non-coding (NR_110103, exon 2 of 5)	non-coding (NR_110103, exon 2 of 5)	960	NR_110103	101929084	Hs.440981	NR_110103	ENSG00000257762	LOC101929084	-	uncharacterized LOC101929084	ncRNA
8.15309-8	chr21	19067004	19067503	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-81985	NM_006806	10950	Hs.473420	NM_006806	ENSG00000154640	BTG3	ANA|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
13.0539	chr6	134996150	134996649	+	0	NA	Intergenic	Intergenic	-135256	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA
6.94649-5	chr6	112575053	112575552	+	0	NA	exon (NM_002290, exon 2 of 39)	exon (NM_002290, exon 2 of 39)	615	NM_001105209	3910	Hs.654572	NM_002290	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin subunit alpha 4	protein-coding
2.33587	chr8	131455675	131456174	+	0	NA	promoter-TSS (NM_018482)	promoter-TSS (NM_018482)	-18	NM_018482	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
0.452752-4	chr1	178499062	178499561	+	0	NA	Intergenic	Intergenic	-12620	NR_033186	400798	Hs.668085	NM_207467	ENSG00000213057	C1orf220	-	chromosome 1 open reading frame 220	ncRNA
0.296531-55	chr6	163834214	163834713	+	0	NA	non-coding (NR_037593, exon 1 of 1)	non-coding (NR_037593, exon 1 of 1)	519	NR_037593	100526820	Hs.644159	NR_037593	ENSG00000270419	CAHM	LINC00468	colon adenocarcinoma hypermethylated (non-protein coding)	ncRNA
0.0833099-5	chr19	39353079	39353578	+	0	NA	Intergenic	LTR35A|LTR|ERV1	-10349	NM_001005335	3191	Hs.644906	NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
6.92504-8	chr19	6767258	6767757	+	0	NA	promoter-TSS (NM_005490)	promoter-TSS (NM_005490)	16	NM_005490	10045	Hs.439645	NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
1.43271-31	chr2	10549142	10549641	+	0	NA	intron (NM_134421, intron 3 of 5)	intron (NM_134421, intron 3 of 5)	37584	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
10.0261	chr3	129360296	129360795	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-34963	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
0.376307-10	chr20	4667597	4668096	+	0	NA	intron (NM_001080123, intron 1 of 1)	CpG	689	NM_001080123	5621	Hs.472010	NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
2.13959-5	chr9	139001125	139001624	+	0	NA	Intergenic	Intergenic	8903	NM_001256526	90120	Hs.287411	NM_152833	ENSG00000238227	C9orf69	-	chromosome 9 open reading frame 69	protein-coding
0.209071-30	chr4	47688212	47688711	+	0	NA	intron (NM_001278586, intron 6 of 13)	intron (NM_001278586, intron 6 of 13)	33775	NR_107020	102467004		NR_107020	ENSG00000277388	MIR8053	hsa-mir-8053	microRNA 8053	ncRNA
0.685421-15	chr19	56652209	56652708	+	0	NA	promoter-TSS (NM_001253792)	promoter-TSS (NM_001253792)	-77	NM_018337	55311	Hs.24545	NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
1.0902-6	chr18	34983800	34984299	+	0	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	62418	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
9.06578-11	chr11	8350284	8350783	+	0	NA	Intergenic	Intergenic	-60351	NM_001270428	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
3.64516-10	chr10	93847425	93847924	+	0	NA	intron (NM_014912, intron 8 of 9)	intron (NM_014912, intron 8 of 9)	155362	NM_001178137	22849	Hs.131683	NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
0.404816-10	chr19	4065788	4066287	+	0	NA	promoter-TSS (NM_001317990)	promoter-TSS (NM_001317990)	-510	NM_001317990	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
0.34328-6	chr2	20189221	20189720	+	0	NA	promoter-TSS (NR_110235)	promoter-TSS (NR_110235)	414	NM_020779	57539	Hs.205427	NM_020779	ENSG00000118965	WDR35	CED2|IFT121|IFTA1|SRTD7	WD repeat domain 35	protein-coding
37.3993-2	chr3	109682741	109683240	+	0	NA	Intergenic	L1PA17|LINE|L1	361315	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
22.3136	chr14	89703008	89703507	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	180197	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
9.78811-7	chr3	40213951	40214450	+	0	NA	TTS (NR_033965)	TTS (NR_033965)	72698	NM_001284426	25924	Hs.594535	NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
0.777937-19	chr5	79286811	79287310	+	0	NA	promoter-TSS (NM_001167741)	promoter-TSS (NM_001167741)	28	NM_001010891	345778	Hs.531418	NM_001010891	ENSG00000177034	MTX3	-	metaxin 3	protein-coding
19.5861-6	chr5	170178575	170179074	+	0	NA	Intergenic	Intergenic	-31899	NM_001291985	2568	Hs.26225	NM_014211	ENSG00000094755	GABRP	-	gamma-aminobutyric acid type A receptor pi subunit	protein-coding
0.109954-9	chr7	149439168	149439667	+	0	NA	Intergenic	Intergenic	27315	NM_001290187	84626	Hs.299560	NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
0.404816-9	chr7	30212189	30212688	+	0	NA	Intergenic	Intergenic	37886	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
1.21478	chr9	102028780	102029279	+	0	NA	Intergenic	Intergenic	44459	NM_006808	10952	Hs.191887	NM_006808	ENSG00000106803	SEC61B	-	Sec61 translocon beta subunit	protein-coding
2.29148-14	chr7	39170347	39170846	+	0	NA	intron (NM_001166018, intron 3 of 10)	intron (NM_001166018, intron 3 of 10)	-117429	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA
5.70248-2	chr13	67551328	67551827	+	0	NA	promoter-TSS (NR_046636)	promoter-TSS (NR_046636)	56	NR_046636	100874086	Hs.577908	NR_046636	ENSG00000225263	PCDH9-AS3	-	PCDH9 antisense RNA 3	ncRNA
0.510982-10	chr9	140149287	140149786	+	0	NA	promoter-TSS (NM_015456)	promoter-TSS (NM_015456)	-216	NM_015456	25920	Hs.521809	NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
0.589858-35	chr21	27162377	27162876	+	0	NA	Intergenic	Intergenic	-54661	NM_001320266	522	Hs.246310	NM_001685	ENSG00000154723	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6	protein-coding
0.510982-19	chr7	132003418	132003917	+	0	NA	intron (NM_020911, intron 3 of 31)	intron (NM_020911, intron 3 of 31)	58047	NR_134565	101928807	Hs.552131	NR_134565		LOC101928807	-	uncharacterized LOC101928807	ncRNA
3.99027-6	chr2	232477152	232477651	+	0	NA	Intergenic	Intergenic	19826	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
1.19186-17	chrX	16804202	16804959	+	0	NA	promoter-TSS (NM_001168683)	promoter-TSS (NM_001168683)	25	NM_018360	55787	Hs.555961	NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
4.80172-14	chr14	48867811	48868310	+	0	NA	Intergenic	Intergenic	-603843	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
0.127808-12	chr2	47659537	47660036	+	0	NA	intron (NM_000251, intron 7 of 15)	SVA_D|Other|Other	29580	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	mutS homolog 2	protein-coding
6.47817-3	chr19	18811999	18812498	+	0	NA	intron (NM_001098482, intron 1 of 14)	intron (NM_001098482, intron 1 of 14)	17823	NM_001098482	23373	Hs.371096	NM_015321	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
0.856568-26	chr7	130790887	130791386	+	0	NA	intron (NR_109854, intron 2 of 5)	CpG	653	NR_024153	378805	Hs.150556	NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
0.168249-19	chr14	54913081	54913580	+	0	NA	Intergenic	Intergenic	-5182	NM_005776	10175	Hs.294603	NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family AMPA receptor auxiliary protein 1	protein-coding
9.62574-15	chr7	153868474	153868973	+	0	NA	intron (NM_130797, intron 1 of 25)	intron (NM_130797, intron 1 of 25)	-111068	NR_136254	101929998	Hs.689473	NR_136254		LOC101929998	-	uncharacterized LOC101929998	ncRNA
2.99296-6	chr16	81995356	81995855	+	0	NA	3' UTR (NM_002661, exon 33 of 33)	3' UTR (NM_002661, exon 33 of 33)	49488	NM_145168	93517	Hs.87779	NM_145168	ENSG00000184860	SDR42E1	HSPC105	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
1.81774-11	chr18	55299299	55299798	+	0	NA	intron (NM_001242804, intron 1 of 2)	SVA_D|Other|Other	2014	NM_001242804	100505549	Hs.660645	NM_001242804		LOC100505549	-	uncharacterized LOC100505549	protein-coding
1.96543-2	chr12	56862073	56862572	+	0	NA	promoter-TSS (NM_207344)	promoter-TSS (NM_207344)	21	NM_207344	283377	Hs.128676	NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
1.4752-15	chr9	88188890	88189389	+	0	NA	intron (NM_001330701, intron 25 of 25)	SVA_D|Other|Other	167805	NM_001330701	23287	Hs.719980	NM_015239	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
5.9176-6	chr1	41469276	41469775	+	0	NA	intron (NR_125440, intron 12 of 17)	MLT1H2|LTR|ERVL-MaLR	-10737	NR_037868	100507178	Hs.660056	NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
19.0658	chr7	66878579	66879078	+	0	NA	Intergenic	Intergenic	77865	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
2.89883-21	chr19	13875011	13875510	+	0	NA	promoter-TSS (NM_032285)	promoter-TSS (NM_032285)	-68	NM_001329572	84245	Hs.439370	NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
0.190881-2	chr13	96744055	96744554	+	0	NA	intron (NM_153456, intron 1 of 1)	intron (NM_153456, intron 1 of 1)	1211	NM_153456	266722	Hs.171001	NM_153456	ENSG00000185352	HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
8.63279-7	chr3	183327087	183327586	+	0	NA	Intergenic	SVA_E|Other|Other	-26075	NM_017644	54800	Hs.407709	NM_017644	ENSG00000114796	KLHL24	DRE1|KRIP6	kelch like family member 24	protein-coding
7.16699	chr2	172968466	172968965	+	0	NA	non-coding (NR_126376, exon 2 of 5)	non-coding (NR_126376, exon 2 of 5)	981	NR_126376	104326193	Hs.600690	NR_126376	ENSG00000236651	DLX2-AS1	TCONS_00003049	DLX2 antisense RNA 1 (head to head)	ncRNA
0.376307-45	chr2	223169829	223170328	+	0	NA	TTS (NM_153038)	TTS (NM_153038)	-6363	NM_181459	5077	Hs.42146	NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|WS1|WS3	paired box 3	protein-coding
2.13249-20	chr17	78620066	78620565	+	0	NA	intron (NM_001163034, intron 3 of 29)	intron (NM_001163034, intron 3 of 29)	101690	NM_020761	57521	Hs.133044	NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
9.95679-10	chr16	53407208	53407707	+	0	NA	promoter-TSS (NR_119378)	promoter-TSS (NR_119378)	52	NR_119378	102723373	Hs.569678	NR_119378	ENSG00000261804	LOC102723373	-	uncharacterized LOC102723373	ncRNA
0.101054-19	chr7	807738	808237	+	0	NA	intron (NM_017802, intron 8 of 12)	CpG	-40674	NM_001164759	5575	Hs.520851	NM_002735	ENSG00000188191	PRKAR1B	PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
4.37707-8	chr8	80527414	80527913	+	0	NA	intron (NM_007029, intron 1 of 4)	intron (NM_007029, intron 1 of 4)	4614	NM_001199214	11075	Hs.521651	NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
14.7625-2	chr9	70601421	70601920	+	0	NA	Intergenic	L1PA13|LINE|L1	-111459	NM_001024916	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding
1.75874-11	chr14	61188367	61188866	+	0	NA	intron (NM_017420, intron 1 of 2)	CpG	2236	NM_017420	51804	Hs.97849	NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
3.95774-19	chr4	112804595	112805094	+	0	NA	Intergenic	Intergenic	-261709	NM_152400	132720	Hs.23439	NM_152400	ENSG00000174749	C4orf32	-	chromosome 4 open reading frame 32	protein-coding
1.24939-15	chr4	7193935	7194434	+	0	NA	promoter-TSS (NM_020777)	promoter-TSS (NM_020777)	-190	NM_020777	57537	Hs.479099	NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
11.4509	chr8	103939609	103940108	+	0	NA	intron (NR_126339, intron 2 of 2)	L2a|LINE|L2	63359	NR_126338	100506753	Hs.602901	NR_126338		AZIN1-AS1	-	AZIN1 antisense RNA 1	ncRNA
10.013-5	chr13	76267533	76268032	+	0	NA	intron (NM_001306080, intron 1 of 30)	intron (NM_001306080, intron 1 of 30)	57358	NM_001306080	4008	Hs.207631	NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LOMP	LIM domain 7	protein-coding
6.65546-9	chr11	86378366	86378865	+	0	NA	intron (NM_001014811, intron 1 of 13)	L2c|LINE|L2	4625	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
0.136762-8	chr6	170534457	170534956	+	0	NA	Intergenic	Intergenic	36951	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
8.96196-18	chr13	33816401	33816900	+	0	NA	intron (NM_001243476, intron 5 of 17)	SVA_B|Other|Other	-35041	NR_046693	100874241	Hs.662433	NR_046693	ENSG00000236581	STARD13-AS	STARD13-AS2	STARD13 antisense RNA	ncRNA
34.437	chr8	141809091	141809590	+	0	NA	intron (NM_001316342, intron 10 of 32)	intron (NM_001316342, intron 10 of 32)	-163694	NM_001164623	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
3.15155-3	chr5	127419129	127419628	+	0	NA	promoter-TSS (NM_001046)	promoter-TSS (NM_001046)	-105	NM_001256461	6558	Hs.162585	NM_001046	ENSG00000064651	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
23.0277	chr12	117771223	117771722	+	0	NA	intron (NM_001204218, intron 1 of 29)	intron (NM_001204218, intron 1 of 29)	-24257	NM_001204214	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
1.64309-9	chr1	228101768	228102267	+	0	NA	Intergenic	Intergenic	27367	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
0.472076-12	chr7	2393467	2393966	+	0	NA	promoter-TSS (NM_003751)	promoter-TSS (NM_003751)	-758	NM_001037283	8662	Hs.371001	NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
2.32102-3	chr19	49924277	49924776	+	0	NA	Intergenic	Intergenic	2172	NM_178449	113091	Hs.339845	NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
5.62249-11	chr2	192560647	192561146	+	0	NA	intron (NR_131917, intron 2 of 2)	MLT1H2|LTR|ERVL-MaLR	5989	NR_131917	105747689	Hs.104972	NR_131917		LOC105747689	-	uncharacterized LOC105747689	ncRNA
1.60522-4	chr12	121197568	121198067	+	0	NA	Intergenic	Intergenic	34276	NM_001302554	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase, C-2 to C-3 short chain	protein-coding
2.25483-2	chr13	101804406	101804905	+	0	NA	intron (NM_052867, intron 15 of 43)	intron (NM_052867, intron 15 of 43)	-208037	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
2.05512-18	chr9	96213659	96214158	+	0	NA	promoter-TSS (NM_001322224)	promoter-TSS (NM_001322224)	-22	NR_136236	158293	Hs.350364	NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120A opposite strand	protein-coding
0.540393-34	chr12	8165495	8165994	+	0	NA	Intergenic	Intergenic	-19615	NM_018416	55810	Hs.120844	NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
0.51587-25	chr6	111803376	111803875	+	0	NA	intron (NM_001286432, intron 2 of 33)	CpG	-1050	NR_034108	643749	Hs.486228	NR_034108	ENSG00000231889	TRAF3IP2-AS1	C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2	TRAF3IP2 antisense RNA 1	ncRNA
6.51695-16	chr8	81033564	81034063	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	-40747	NM_001287142	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
18.962-2	chr22	37442966	37443465	+	0	NA	Intergenic	MIRb|SINE|MIR	-4561	NM_001282684	79734	Hs.517597	NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
0.777937-2	chr3	172587133	172587632	+	0	NA	Intergenic	Intergenic	118907	NM_018098	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
8.66461-3	chr21	33976660	33977159	+	0	NA	intron (NR_036552, intron 2 of 5)	intron (NR_036552, intron 2 of 5)	8004	NR_036552	56683	Hs.5811	NM_017835	ENSG00000159079	C21orf59	C21orf48|CILD26|FBB18|Kur	chromosome 21 open reading frame 59	protein-coding
1.12383-5	chr19	18132863	18133362	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	14135	NM_001286826	27106	Hs.515249	NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
0.132283-18	chr1	205493314	205493813	+	0	NA	intron (NM_212503, intron 4 of 15)	intron (NM_212503, intron 4 of 15)	19879	NM_002596	5129	Hs.445402	NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
8.09668-5	chr6	37291312	37291811	+	0	NA	intron (NM_017772, intron 12 of 12)	intron (NM_017772, intron 12 of 12)	-30187	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
0.550241-25	chr12	123736798	123737297	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	15754	NM_001270434	8099	Hs.433201	NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
0.675262-5	chr5	176739167	176739666	+	0	NA	promoter-TSS (NM_001142935)	promoter-TSS (NM_001142935)	-124	NM_001142935	83463	Hs.743332	NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
4.59671-12	chr7	44080025	44080524	+	0	NA	promoter-TSS (NR_024116)	promoter-TSS (NR_024116)	-52	NR_024116	401331	Hs.530089	NR_024116		RASA4CP	RASA4P	RAS p21 protein activator 4C, pseudogene	pseudo
4.67246-8	chr7	36985132	36985631	+	0	NA	intron (NM_001206482, intron 16 of 21)	intron (NM_001206482, intron 16 of 21)	-26344	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
6.75718-5	chr15	25984918	25985417	+	0	NA	intron (NM_024490, intron 2 of 20)	intron (NM_024490, intron 2 of 20)	108805	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
13.9147-3	chr8	140445818	140446317	+	0	NA	Intergenic	Intergenic	269232	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
0.47692-12	chr6	34458809	34459308	+	0	NA	intron (NM_020804, intron 1 of 9)	HERV16-int|LTR|ERVL	-23591	NM_001199583	29993	Hs.520087	NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
9.70616-7	chr13	106571756	106572255	+	0	NA	Intergenic	Intergenic	212826	NR_120418	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
26.3451-3	chr2	230271814	230272313	+	0	NA	intron (NM_139072, intron 9 of 12)	intron (NM_139072, intron 9 of 12)	-136006	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
4.41291-6	chr6	47277445	47277944	+	0	NA	promoter-TSS (NM_014452)	promoter-TSS (NM_014452)	-11	NM_014452	27242	Hs.443577	NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
2.00659-6	chr15	69960629	69961128	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	76339	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA
2.89883-6	chr8	10849348	10849847	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	43215	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
0.34328	chr7	122021042	122021541	+	0	NA	intron (NM_001167940, intron 24 of 29)	intron (NM_001167940, intron 24 of 29)	-76726	NM_001160264	389549	Hs.553970	NM_001024613	ENSG00000128610	FEZF1	FEZ|HH22|ZNF312B	FEZ family zinc finger 1	protein-coding
7.98603-7	chr4	64903387	64903886	+	0	NA	Intergenic	SVA_B|Other|Other	371542	NM_001010874	253017	Hs.227752	NM_001010874	ENSG00000205678	TECRL	CPVT3|GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
1.02373-9	chr8	139779887	139780386	+	0	NA	intron (NM_152888, intron 16 of 64)	intron (NM_152888, intron 16 of 64)	146113	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
2.61219-16	chr9	72374501	72375000	+	0	NA	intron (NM_001099666, intron 1 of 7)	CpG	126	NM_001099666	375743	Hs.744192	NM_001099666	ENSG00000188647	PTAR1	-	protein prenyltransferase alpha subunit repeat containing 1	protein-coding
0.8302-13	chr13	97877114	97877613	+	0	NA	intron (NM_001306070, intron 1 of 7)	intron (NM_001306070, intron 1 of 7)	2813	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
0.409586-24	chr11	11576679	11577178	+	0	NA	intron (NM_198516, intron 1 of 10)	intron (NM_198516, intron 1 of 10)	66633	NM_198516	374378	Hs.655152	NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
0.25028-26	chr16	56485879	56486378	+	0	NA	promoter-TSS (NM_007006)	promoter-TSS (NM_007006)	132	NM_001324358	55239	Hs.231883	NM_018233	ENSG00000087263	OGFOD1	TPA1	2-oxoglutarate and iron dependent oxygenase domain containing 1	protein-coding
1.38466-17	chr5	13523279	13523778	+	0	NA	Intergenic	LTR9|LTR|ERV1	421061	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding
5.98599-11	chr1	8762132	8762631	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	115318	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
4.13413-3	chr2	182545320	182545819	+	0	NA	promoter-TSS (NM_002500)	promoter-TSS (NM_002500)	-177	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
0.15923-40	chr19	18746773	18747272	+	0	NA	promoter-TSS (NM_001345985)	promoter-TSS (NM_001345985)	-753	NM_001345984	55295	Hs.250632	NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
0.680339-21	chr9	123492900	123493399	+	0	NA	Intergenic	Intergenic	-16384	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
3.63512-14	chr22	43832076	43832575	+	0	NA	intron (NM_001044370, intron 3 of 6)	intron (NM_001044370, intron 3 of 6)	24305	NM_001044370	758	Hs.159538	NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding
2.1467-5	chr2	42396285	42396784	+	0	NA	promoter-TSS (NM_019063)	promoter-TSS (NM_019063)	56	NM_001145076	27436	Hs.713173	NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
12.6043	chr12	32383446	32383945	+	0	NA	intron (NM_001003398, intron 2 of 8)	L2|LINE|L2	123510	NM_001003398	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
0.783135-5	chr13	114429825	114430324	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	23988	NR_028064	100130386	Hs.704121	NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
0.649968-40	chr7	143589615	143590114	+	0	NA	intron (NM_001206938, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	-7398	NM_001206941	9747	Hs.735149	NM_014719	ENSG00000198420	TCAF1	FAM115A	TRPM8 channel associated factor 1	protein-coding
2.81498	chr18	64744467	64744966	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4105	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
3.40084-22	chr1	18306287	18306786	+	0	NA	Intergenic	Intergenic	-85615	NR_125946	101927876	Hs.522954	NR_125946	ENSG00000261781	LINC01654	-	long intergenic non-protein coding RNA 1654	ncRNA
0.0130484-5	chr5	115420808	115421307	+	0	NA	promoter-TSS (NM_001308080)	promoter-TSS (NM_001308080)	-102	NM_001308080	51397	Hs.483136	NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
1.94499-6	chr5	98106565	98107064	+	0	NA	non-coding (NR_033932, exon 2 of 2)	non-coding (NR_033932, exon 2 of 2)	1815	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule family member b	protein-coding
0.101054-44	chr9	140067835	140068334	+	0	NA	Intergenic	Intergenic	-1586	NM_001282477	100505993	Hs.512463	NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
1.54282-8	chr20	62587627	62588126	+	0	NA	promoter-TSS (NR_126526)	promoter-TSS (NR_126526)	-76	NM_017859	54963	Hs.504998	NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
16.038-11	chr15	48313530	48314029	+	0	NA	Intergenic	Intergenic	-99390	NM_205850	283652	Hs.710240	NM_205850	ENSG00000188467	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 member 5	protein-coding
1.82435-20	chr1	165870073	165870572	+	0	NA	intron (NM_012474, intron 4 of 6)	intron (NM_012474, intron 4 of 6)	-6836	NR_037431	100500832		NR_037431	ENSG00000143179	MIR3658	-	microRNA 3658	ncRNA
1.20331-6	chr14	31926437	31926936	+	0	NA	promoter-TSS (NM_080664)	promoter-TSS (NM_080664)	-6	NM_080664	112487	Hs.116014	NM_080664	ENSG00000129480	DTD2	C14orf126	D-tyrosyl-tRNA deacylase 2 (putative)	protein-coding
0.920515-28	chr18	59798471	59798970	+	0	NA	intron (NM_176787, intron 14 of 30)	intron (NM_176787, intron 14 of 30)	55569	NM_012327	23556	Hs.157031	NM_012327	ENSG00000197563	PIGN	MCAHS|MCAHS1|MCD4|MDC4|PIG-N	phosphatidylinositol glycan anchor biosynthesis class N	protein-coding
2.89883-10	chr1	45963555	45964054	+	0	NA	intron (NR_033296, intron 2 of 4)	SVA_D|Other|Other	1947	NR_033298	126661	Hs.461300	NM_001102601	ENSG00000280670	CCDC163	C1orf231|CCDC163P	coiled-coil domain containing 163	pseudo
0.0261362-8	chr9	4793076	4793575	+	0	NA	intron (NM_001286699, intron 1 of 6)	CpG	491	NM_005772	10171	Hs.194121	NM_005772	ENSG00000120158	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase like 1	protein-coding
15.9007-2	chr15	65197565	65198064	+	0	NA	Intergenic	CpG	-6287	NM_182703	348094	Hs.207157	NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
20.9691-3	chr1	40342755	40343254	+	0	NA	intron (NM_001312691, intron 1 of 9)	FLAM_C|SINE|Alu	6179	NR_132402	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
1.23782-6	chr11	107787214	107787713	+	0	NA	Intergenic	LTR1|LTR|ERV1	-11738	NM_017516	54734	Hs.354906	NM_017516	ENSG00000179331	RAB39A	RAB39	RAB39A, member RAS oncogene family	protein-coding
15.376	chr17	60827592	60828091	+	0	NA	intron (NM_001288779, intron 4 of 11)	intron (NM_001288779, intron 4 of 11)	56173	NM_001100875	162333	Hs.665663	NM_152598	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane associated ring-CH-type finger 10	protein-coding
26.2709-2	chr15	94954479	94954978	+	0	NA	intron (NM_001159643, intron 16 of 19)	intron (NM_001159643, intron 16 of 19)	55564	NM_001159644	55784	Hs.33368	NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
15.4363	chr12	131061715	131062214	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-59554	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
8.32683-9	chr9	92291125	92291624	+	0	NA	intron (NR_024280, intron 3 of 5)	CpG	36676	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
8.26814-20	chr14	61119042	61119541	+	0	NA	Intergenic	Intergenic	-3136	NM_005982	6495	Hs.633506	NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
0.48177-3	chr19	13056297	13056796	+	0	NA	promoter-TSS (NM_005053)	promoter-TSS (NM_005053)	-82	NM_001270362	5886	Hs.643267	NM_005053	ENSG00000179262	RAD23A	HHR23A|HR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding
15.0446-2	chr6	36695205	36695704	+	0	NA	exon (NM_001257357, exon 11 of 14)	exon (NM_001257357, exon 11 of 14)	29732	NM_001314018	57699	Hs.657869	NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
8.79426-10	chr2	190819572	190820071	+	0	NA	Intergenic	L1PB4|LINE|L1	107634	NM_005259	2660	Hs.41565	NM_005259	ENSG00000138379	MSTN	GDF8|MSLHP	myostatin	protein-coding
0.419142-7	chr11	110583142	110583641	+	0	NA	promoter-TSS (NM_020809)	promoter-TSS (NM_020809)	60	NM_001258417	57569	Hs.6136	NM_020809	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
1.26098-14	chr12	85674031	85674530	+	0	NA	intron (NM_006982, intron 1 of 3)	CpG	244	NM_006982	8092	Hs.41683	NM_006982	ENSG00000180318	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding
0.772745-10	chr21	43758320	43758819	+	0	NA	Intergenic	Intergenic	12639	NM_005423	7032	Hs.2979	NM_005423	ENSG00000160181	TFF2	SML1|SP	trefoil factor 2	protein-coding
7.39929-6	chr6	22145498	22145997	+	0	NA	intron (NR_034143, intron 2 of 2)	intron (NR_034143, intron 2 of 2)	1675	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
2.13249-4	chr20	343037	343536	+	0	NA	Intergenic	Intergenic	14737	NM_001323685	80023	Hs.416024	NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
1.81115-2	chr20	31198539	31199038	+	0	NA	Intergenic	Intergenic	23507	NR_034152	149950	Hs.516980	NM_001010976	ENSG00000204393	LOC149950	-	uncharacterized LOC149950	ncRNA
8.32683-7	chr16	84085593	84086092	+	0	NA	Intergenic	Intergenic	-10080	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FVH2	solute carrier family 38 member 8	protein-coding
0.472076-3	chr9	135465100	135465599	+	0	NA	3' UTR (NM_020064, exon 3 of 3)	3' UTR (NM_020064, exon 3 of 3)	7356	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
1.82435-21	chr15	89181921	89182420	+	0	NA	5' UTR (NM_001303237, exon 1 of 4)	5' UTR (NM_001303237, exon 1 of 4)	196	NM_001303236	3669	Hs.459265	NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
3.35358-6	chr17	71009429	71009928	+	0	NA	intron (NM_001159770, intron 4 of 9)	MER58A|DNA|hAT-Charlie	79175	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding
17.8781-3	chrX	11170205	11170704	+	0	NA	intron (NR_109776, intron 11 of 14)	intron (NR_109776, intron 11 of 14)	41048	NM_001122608	3052	Hs.211571	NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
14.0012	chr5	22985682	22986181	+	0	NA	Intergenic	Intergenic	-132200	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
2.50264	chr2	25082817	25083316	+	0	NA	intron (NM_004036, intron 3 of 21)	intron (NM_004036, intron 3 of 21)	59820	NM_001320613	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC-III|AC3	adenylate cyclase 3	protein-coding
0.467237-9	chr10	93557837	93558336	+	0	NA	promoter-TSS (NR_108070)	promoter-TSS (NR_108070)	-38	NR_108071	100507633	Hs.291528	NR_108070	ENSG00000228701	TNKS2-AS1	-	TNKS2 antisense RNA 1 (head to head)	ncRNA
0.535477-3	chr7	56019289	56019788	+	0	NA	promoter-TSS (NM_015969)	promoter-TSS (NM_015969)	-73	NM_015969	51373	Hs.44298	NM_015969	ENSG00000239789	MRPS17	HSPC011|MRP-S17|RPMS17|S17mt	mitochondrial ribosomal protein S17	protein-coding
0.245682-19	chr3	16553867	16554366	+	0	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	1106	NM_015150	23180	Hs.98910	NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
1.4691-11	chr2	159125574	159126073	+	0	NA	intron (NM_138803, intron 9 of 13)	L1MA9|LINE|L1	102661	NR_038850	554201	Hs.570262	NR_038850	ENSG00000227480	CCDC148-AS1	-	CCDC148 antisense RNA 1	ncRNA
2.13249-16	chr5	41068222	41068721	+	0	NA	intron (NM_173489, intron 2 of 41)	MIRb|SINE|MIR	2973	NM_173489	133558	Hs.97714	NM_173489	ENSG00000171495	MROH2B	HEATR7B2	maestro heat like repeat family member 2B	protein-coding
8.12479-7	chr4	10626793	10627292	+	0	NA	intron (NM_052964, intron 2 of 18)	intron (NM_052964, intron 2 of 18)	59344	NM_052964	116449	Hs.678910	NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
0.925886-6	chr9	133320834	133321333	+	0	NA	intron (NM_054012, intron 1 of 14)	intron (NM_054012, intron 1 of 14)	989	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
0.338583-6	chr14	23476128	23476627	+	0	NA	intron (NM_001130706, intron 1 of 7)	CpG	3033	NM_001282970	60686	Hs.255874	NM_021944	ENSG00000100802	C14orf93	-	chromosome 14 open reading frame 93	protein-coding
0.118872	chr1	116184299	116184798	+	0	NA	promoter-TSS (NM_001172411)	promoter-TSS (NM_001172411)	-26	NM_138959	81839	Hs.515130	NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
0.888424-2	chr15	27124733	27125232	+	0	NA	intron (NM_001165037, intron 3 of 10)	Charlie13a|DNA|hAT-Charlie	12709	NM_001165037	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	gamma-aminobutyric acid type A receptor alpha5 subunit	protein-coding
1.4752-9	chr1	226737162	226737661	+	0	NA	intron (NM_001003665, intron 1 of 3)	CpG	910	NM_001003665	375057	Hs.116827	NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
1.07905-21	chr6	155347489	155347988	+	0	NA	Intergenic	Intergenic	-63685	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
4.00117	chr5	38167306	38167805	+	0	NA	Intergenic	Intergenic	18973	NR_134272	101929745	Hs.374715	NR_134272	ENSG00000248461	LINC02119	-	long intergenic non-protein coding RNA 2119	ncRNA
11.0018-4	chr10	22042721	22043220	+	0	NA	Intergenic	Intergenic	219396	NM_001195626	8028	Hs.30385	NM_004641	ENSG00000078403	MLLT10	AF10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding
1.87087-9	chr3	13606509	13607008	+	0	NA	intron (NM_001004019, intron 1 of 17)	intron (NM_001004019, intron 1 of 17)	-3482	NM_001165035	2199	Hs.198862	NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
9.87163-15	chr6	37664648	37665147	+	0	NA	5' UTR (NM_153487, exon 1 of 17)	5' UTR (NM_153487, exon 1 of 17)	869	NM_153487	266727	Hs.437993	NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
7.16699-15	chr2	169012120	169012619	+	0	NA	intron (NM_013233, intron 5 of 17)	intron (NM_013233, intron 5 of 17)	91736	NM_013233	27347	Hs.276271	NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
4.05607-7	chr8	66307567	66308066	+	0	NA	Intergenic	Intergenic	167085	NR_033893	286186	Hs.449427	NR_033893	ENSG00000254081	LINC01299	-	long intergenic non-protein coding RNA 1299	ncRNA
15.6703	chr14	36458354	36458853	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-81030	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
3.5164-5	chr13	113332181	113332680	+	0	NA	intron (NM_207440, intron 1 of 2)	SVA_B|Other|Other	-12213	NM_032189	23250	Hs.29189	NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS	ATPase phospholipid transporting 11A	protein-coding
0.899095-3	chr5	98355892	98356391	+	0	NA	Intergenic	Intergenic	91303	NR_036530	100289230	Hs.552095	NR_036530		LOC100289230	-	uncharacterized LOC100289230	ncRNA
1.17475-28	chr13	38569171	38569670	+	0	NA	Intergenic	UCON25|Unknown|Unknown	-125481	NM_001135958	7223	Hs.262960	NM_003306	ENSG00000133107	TRPC4	HTRP-4|HTRP4|TRP4	transient receptor potential cation channel subfamily C member 4	protein-coding
0.0217692-26	chr12	108823244	108823743	+	0	NA	Intergenic	Intergenic	43973	NR_120483	102723562	Hs.455693	NR_120483	ENSG00000247213	LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
4.36519-10	chr6	16771108	16771607	+	0	NA	Intergenic	Intergenic	-9636	NM_001128164	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
3.32547-4	chr14	94389593	94390092	+	0	NA	non-coding (NR_027004, exon 2 of 11)	non-coding (NR_027004, exon 2 of 11)	2876	NR_027004	283592	Hs.585648	NR_027004	ENSG00000258584	FAM181A-AS1	C14orf86	FAM181A antisense RNA 1	ncRNA
21.2321	chr11	71713201	71713700	+	0	NA	TTS (NM_001286561)	TTS (NM_001286561)	2477	NM_001145055	10068	Hs.591967	NM_005699	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
3.7059-10	chr6	139308554	139309053	+	0	NA	exon (NM_001128617, exon 1 of 19)	exon (NM_001128617, exon 1 of 19)	595	NM_001286611	85021	Hs.334603	NM_031922	ENSG00000135597	REPS1	RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
2.98432-3	chr17	65241946	65242445	+	0	NA	promoter-TSS (NM_014877)	promoter-TSS (NM_014877)	-875	NM_001330447	9931	Hs.370140	NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
1.96543-10	chr5	55692959	55693458	+	0	NA	Intergenic	SVA_B|Other|Other	84388	NR_104664	102467147	Hs.650177	NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
0.510982-22	chr9	101077739	101078238	+	0	NA	intron (NM_005458, intron 13 of 18)	intron (NM_005458, intron 13 of 18)	-59985	NM_018421	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
2.35077-10	chr2	23768250	23768749	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	160201	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
0.91515-14	chr2	85985504	85986003	+	0	NA	intron (NM_032827, intron 1 of 2)	intron (NM_032827, intron 1 of 2)	4844	NM_032827	84913	Hs.135569	NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
11.7457-2	chr17	58199519	58200018	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-19488	NR_027408	653653	Hs.631741	NR_027408	ENSG00000280852	LOC653653	-	adaptor related protein complex 1 sigma 2 subunit pseudogene	pseudo
5.04456	chr4	819613	820112	+	0	NA	promoter-TSS (NM_006651)	promoter-TSS (NM_006651)	83	NM_006651	10815	Hs.478930	NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1	complexin 1	protein-coding
1.99283-11	chr1	84322737	84323236	+	0	NA	intron (NR_119374, intron 1 of 2)	intron (NR_119374, intron 1 of 2)	3243	NR_119374	101927560	Hs.559661	NR_119374	ENSG00000233008	LOC101927560	-	uncharacterized LOC101927560	ncRNA
1.6877-10	chr7	100486883	100487382	+	0	NA	TTS (NM_015831)	TTS (NM_015831)	207	NM_001015072	402682	Hs.534845	NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
1.84422-5	chr7	150019881	150020764	+	0	NA	promoter-TSS (NM_001142928)	promoter-TSS (NM_001142928)	26	NM_023942	65999	Hs.647119	NM_023942	ENSG00000127399	LRRC61	HSPC295	leucine rich repeat containing 61	protein-coding
0.491485-21	chr14	96712467	96712966	+	0	NA	Intergenic	Intergenic	-9831	NM_000710	623	Hs.525572	NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
3.56547	chr11	65686669	65687168	+	0	NA	promoter-TSS (NM_001135635)	promoter-TSS (NM_001135635)	190	NM_006442	10589	Hs.356742	NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
1.36677-22	chr9	3525803	3526302	+	0	NA	promoter-TSS (NM_001282116)	promoter-TSS (NM_001282116)	-51	NM_134428	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
14.389-2	chr8	59746263	59746762	+	0	NA	intron (NM_014729, intron 5 of 8)	intron (NM_014729, intron 5 of 8)	-174108	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
0.227338-5	chr1	155293948	155294447	+	0	NA	promoter-TSS (NR_103478)	promoter-TSS (NR_103478)	11	NM_001278230	23623	Hs.226499	NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
0.589858-2	chr22	35776818	35777317	+	0	NA	promoter-TSS (NM_002133)	promoter-TSS (NM_002133)	7	NM_002133	3162	Hs.517581	NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase 1	protein-coding
2.19683	chr2	60776492	60776991	+	0	NA	intron (NM_138559, intron 1 of 4)	CpG	3892	NM_018014	53335	Hs.370549	NM_018014	ENSG00000119866	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A	protein-coding
0.118872-22	chr5	4557422	4557921	+	0	NA	Intergenic	Intergenic	-215923	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
2.32102-11	chr3	129409186	129409685	+	0	NA	intron (NM_001128224, intron 3 of 5)	MLT1J1|LTR|ERVL-MaLR	-1860	NR_033361	23023	Hs.477547	NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
3.54578-4	chrX	38079116	38079615	+	0	NA	intron (NM_001170751, intron 1 of 8)	intron (NM_001170751, intron 1 of 8)	812	NM_001170750	8406	Hs.15154	NM_006307	ENSG00000101955	SRPX	DRS|ETX1|HEL-S-83p|SRPX1	sushi repeat containing protein, X-linked	protein-coding
12.1824	chr8	90996575	90997074	+	0	NA	promoter-TSS (NM_002485)	promoter-TSS (NM_002485)	75	NM_002485	4683	Hs.492208	NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
17.122-7	chr6	134785724	134786223	+	0	NA	non-coding (NR_038216, exon 2 of 3)	non-coding (NR_038216, exon 2 of 3)	14062	NR_125852	101928231	Hs.634168	NR_125852		LOC101928231	-	uncharacterized LOC101928231	ncRNA
6.23423-2	chr7	28996154	28997000	+	0	NA	exon (NM_014817, exon 3 of 3)	exon (NM_014817, exon 3 of 3)	1452	NM_014817	9865	Hs.744120	NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
2.04815-19	chr10	104179166	104179665	+	0	NA	promoter-TSS (NM_001270966)	promoter-TSS (NM_001270966)	69	NM_001270966	5662	Hs.154658	NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
0.5061-10	chr3	108689334	108689833	+	0	NA	intron (NM_014429, intron 25 of 27)	intron (NM_014429, intron 25 of 27)	-16906	NM_005459	9626	Hs.233363	NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
6.43974-8	chr3	42709251	42709750	+	0	NA	TTS (NM_145166)	TTS (NM_145166)	-13620	NR_125400	101928323		NR_125400		LOC101928323	-	uncharacterized LOC101928323	ncRNA
1.81115-3	chr9	140444631	140445130	+	0	NA	5' UTR (NM_001098537, exon 1 of 35)	5' UTR (NM_001098537, exon 1 of 35)	141	NM_152286	375775	Hs.294147	NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
1.35489-23	chr3	140063547	140064046	+	0	NA	intron (NM_022131, intron 2 of 16)	intron (NM_022131, intron 2 of 16)	163835	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
0.501223-9	chr17	80063543	80064042	+	0	NA	intron (NM_198082, intron 16 of 16)	intron (NM_198082, intron 16 of 16)	-7686	NM_004104	2194	Hs.83190	NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
0.070049-25	chr2	198571025	198571524	+	0	NA	exon (NM_138395, exon 1 of 1)	exon (NM_138395, exon 1 of 1)	1246	NM_138395	92935	Hs.744330	NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
3.85103-19	chr20	46834433	46834932	+	0	NA	Intergenic	Intergenic	-153972	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
0.0130484-52	chr19	12946013	12946512	+	0	NA	promoter-TSS (NM_001270442)	promoter-TSS (NM_001270442)	-20	NM_031429	83546	Hs.21162	NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
6.07303-7	chr13	75959073	75959572	+	0	NA	intron (NM_014832, intron 1 of 20)	intron (NM_014832, intron 1 of 20)	96982	NM_001286658	9882	Hs.210891	NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding
2.10419-7	chr3	180319196	180319695	+	0	NA	promoter-TSS (NM_001042601)	promoter-TSS (NM_001042601)	-473	NM_133462	151613	Hs.43213	NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
0.428718-5	chr12	76205858	76206357	+	0	NA	Intergenic	Intergenic	219449	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
6.77781-12	chr17	76246974	76247473	+	0	NA	Intergenic	Intergenic	19832	NM_001204211	283999	Hs.632228	NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
5.157-10	chr6	43543529	43544028	+	0	NA	promoter-TSS (NM_020750)	promoter-TSS (NM_020750)	34	NM_020750	57510	Hs.203206	NM_020750	ENSG00000124571	XPO5	exp5	exportin 5	protein-coding
1.35489-28	chr2	54342635	54343134	+	0	NA	exon (NM_138448, exon 1 of 4)	exon (NM_138448, exon 1 of 4)	474	NM_138448	98	Hs.516173	NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
3.58526-2	chr8	67976338	67976837	+	0	NA	promoter-TSS (NM_024790)	promoter-TSS (NM_024790)	-16	NM_024790	79848	Hs.370147	NM_024790	ENSG00000104218	CSPP1	CSPP|JBTS21	centrosome and spindle pole associated protein 1	protein-coding
11.9044-2	chr5	146024716	146025215	+	0	NA	intron (NM_181675, intron 6 of 9)	intron (NM_181675, intron 6 of 9)	-129289	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
2.32844-2	chr4	52710690	52711189	+	0	NA	intron (NM_001287755, intron 1 of 10)	CpG	1194	NM_001287755	23142	Hs.605388	NM_015115	ENSG00000109184	DCUN1D4	-	defective in cullin neddylation 1 domain containing 4	protein-coding
25.4363	chr18	60828912	60829411	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	157452	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
0.555173-7	chr3	195622527	195623026	+	0	NA	promoter-TSS (NM_001010938)	promoter-TSS (NM_001010938)	-344	NM_001010938	10188	Hs.518513	NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
0.0130484-55	chr9	139377834	139378333	+	0	NA	promoter-TSS (NM_014866)	promoter-TSS (NM_014866)	128	NM_001276418	9919	Hs.522500	NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
0.783135-3	chr9	79712852	79713351	+	0	NA	Intergenic	Intergenic	78530	NM_001013735	442425	Hs.553843	NM_001013735	ENSG00000204612	FOXB2	bA159H20.4	forkhead box B2	protein-coding
1.22053-13	chr4	108910157	108910995	+	0	NA	promoter-TSS (NM_001184705)	promoter-TSS (NM_001184705)	-294	NM_001184705	3033	Hs.438289	NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
0.680339-11	chr4	85671393	85671892	+	0	NA	intron (NM_014991, intron 36 of 67)	intron (NM_014991, intron 36 of 67)	167585	NM_001263	1040	Hs.654899	NM_001263	ENSG00000163624	CDS1	CDS	CDP-diacylglycerol synthase 1	protein-coding
0.510982-23	chr1	7022998	7023497	+	0	NA	intron (NM_015215, intron 3 of 22)	intron (NM_015215, intron 3 of 22)	177863	NM_001195563	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
1.86419-10	chr3	136506189	136506688	+	0	NA	Intergenic	Intergenic	-31423	NM_001097599	80723	Hs.477692	NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
1.4813-14	chr19	13154145	13154644	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	18999	NM_001271043	4784	Hs.257970	NM_002501	ENSG00000008441	NFIX	CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
4.44906	chr2	11164321	11164820	+	0	NA	Intergenic	Intergenic	107732	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
4.14539-10	chr4	139085341	139085840	+	0	NA	3' UTR (NM_014331, exon 12 of 12)	3' UTR (NM_014331, exon 12 of 12)	-33751	NR_037866	641365	Hs.435630	NR_037866	ENSG00000248307	LINC00616	-	long intergenic non-protein coding RNA 616	ncRNA
0.199966-19	chr9	130692478	130692977	+	0	NA	intron (NM_001135219, intron 1 of 9)	MIR|SINE|MIR	349	NM_001135219	138429	Hs.734928	NM_173492	ENSG00000167103	PIP5KL1	PIPKH|bA203J24.5	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
0.0524306	chr4	153911853	153912352	+	0	NA	Intergenic	MIRc|SINE|MIR	47967	NM_033393	85462	Hs.132629	NM_033393	ENSG00000137460	FHDC1	-	FH2 domain containing 1	protein-coding
1.20331-18	chr11	116512159	116512658	+	0	NA	intron (NR_135069, intron 1 of 2)	intron (NR_135069, intron 1 of 2)	2269	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
3.92545-4	chr3	49927633	49928132	+	0	NA	intron (NM_001244937, intron 17 of 18)	intron (NM_001244937, intron 17 of 18)	13188	NR_134919	4486	Hs.517973	NM_002447	ENSG00000164078	MST1R	CD136|CDw136|NPCA3|PTK8|RON	macrophage stimulating 1 receptor	protein-coding
4.21361-8	chr6	30028371	30028870	+	0	NA	promoter-TSS (NM_001278786).3	promoter-TSS (NM_001278786).3	341	NR_026751	80862	Hs.653168	NR_026751	ENSG00000204623	ZNRD1ASP	C6orf12|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1-AS1|ZNRD1AS|ZNRD1AS1	zinc ribbon domain containing 1 antisense, pseudogene	pseudo
19.6257	chr1	184265504	184266003	+	0	NA	Intergenic	Intergenic	-90397	NM_030806	81563	Hs.497159	NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
0.186345-7	chr7	14497230	14497729	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	383596	NM_145695	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
1.33122-32	chr14	103978921	103979420	+	0	NA	Intergenic	Intergenic	10026	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|HEL-211|HEL-S-29	creatine kinase B	protein-coding
6.47817-11	chr17	72438745	72439244	+	0	NA	intron (NM_018653, intron 2 of 3)	intron (NM_018653, intron 2 of 3)	9158	NM_018653	55890	Hs.446438	NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
2.02732-5	chr3	135684349	135684848	+	0	NA	promoter-TSS (NM_002718)	promoter-TSS (NM_002718)	83	NM_001190447	5523	Hs.518155	NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
5.11449-7	chr1	1167222	1167721	+	0	NA	promoter-TSS (NM_016176)	promoter-TSS (NM_016176)	-24	NM_016547	51150	Hs.42806	NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
5.22879-6	chr10	104677245	104677744	+	0	NA	promoter-TSS (NM_199077)	promoter-TSS (NM_199077)	-581	NM_199077	54805	Hs.643509	NM_017649	ENSG00000148842	CNNM2	ACDP2|HOMG6|HOMGSMR	cyclin and CBS domain divalent metal cation transport mediator 2	protein-coding
10.6905	chr5	1050469	1050968	+	0	NA	3' UTR (NM_006598, exon 24 of 24)	3' UTR (NM_006598, exon 24 of 24)	12371	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
18.8941-7	chr7	70089453	70089952	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-507821	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
1.45694-6	chr12	125348141	125348640	+	0	NA	5' UTR (NM_005505, exon 1 of 13)	5' UTR (NM_005505, exon 1 of 13)	129	NM_005505	949	Hs.731377	NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
0.070049-4	chr17	58603163	58603662	+	0	NA	5' UTR (NM_001282476, exon 1 of 12)	5' UTR (NM_001282476, exon 1 of 12)	189	NM_006380	10513	Hs.84084	NM_006380	ENSG00000062725	APPBP2	APP-BP2|HS.84084|PAT1	amyloid beta precursor protein binding protein 2	protein-coding
0.34328-8	chr7	104524126	104524625	+	0	NA	intron (NM_199000, intron 2 of 2)	intron (NM_199000, intron 2 of 2)	42717	NR_027374	723809	Hs.124316	NR_027374	ENSG00000225329	LHFPL3-AS2	-	LHFPL3 antisense RNA 2	ncRNA
31.831	chr5	14501858	14502357	+	0	NA	intron (NM_007118, intron 53 of 56)	intron (NM_007118, intron 53 of 56)	-79784	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding
1.06238-10	chr4	147560025	147560524	+	0	NA	5' UTR (NM_004575, exon 1 of 2)	5' UTR (NM_004575, exon 1 of 2)	229	NM_004575	5458	Hs.266	NM_004575	ENSG00000151615	POU4F2	BRN3.2|BRN3B|Brn-3b	POU class 4 homeobox 2	protein-coding
0.705811-4	chr7	53811685	53812184	+	0	NA	intron (NR_038371, intron 4 of 5)	L1PA15|LINE|L1	67690	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	LINC01446	GS1-179L18.1	long intergenic non-protein coding RNA 1446	ncRNA
1.06793-14	chr1	165797657	165798489	+	0	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	1341	NM_012474	7371	Hs.458360	NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
1.27844-2	chr1	27098065	27098564	+	0	NA	intron (NM_139135, intron 12 of 19)	intron (NM_139135, intron 12 of 19)	-16140	NM_017837	55650	Hs.259605	NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
1.49967-21	chr9	117373323	117373822	+	0	NA	promoter-TSS (NM_001330760)	promoter-TSS (NM_001330760)	-28	NM_001330760	203197	Hs.522357	NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
0.94744-10	chr18	24445469	24445968	+	0	NA	promoter-TSS (NM_001317387)	promoter-TSS (NM_001317387)	90	NM_001650	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	MIWC|WCH4	aquaporin 4	protein-coding
1.18615-5	chr4	2757659	2758158	+	0	NA	promoter-TSS (NM_001161527)	promoter-TSS (NM_001161527)	-156	NM_001161527	79155	Hs.368551	NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
0.79355-12	chr8	22722336	22722835	+	0	NA	intron (NM_144962, intron 3 of 6)	CpG	-12900	NR_125433	101929237	Hs.677838	NR_125433	ENSG00000248738	LOC101929237	-	uncharacterized LOC101929237	ncRNA
1.21478-4	chr8	42396332	42396974	+	0	NA	promoter-TSS (NM_001257181)	promoter-TSS (NM_001257181)	2	NM_001257181	6575	Hs.653173	NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
0.400052-48	chr2	27487760	27488259	+	0	NA	intron (NM_001318949, intron 1 of 8)	CpG-14833	-2049	NM_003459	7781	Hs.467981	NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
9.66576-3	chr9	2299879	2300378	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	141672	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
4.4855	chr5	43020415	43020914	+	0	NA	promoter-TSS (NR_104650)	promoter-TSS (NR_104650)	-919	NR_104650	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	ncRNA
23.1695-2	chr13	78358540	78359039	+	0	NA	Intergenic	Intergenic	-34283	NR_103853	100505518	Hs.742215	NR_103853		EDNRB-AS1	-	EDNRB antisense RNA 1	ncRNA
3.53596-3	chr12	121837586	121838085	+	0	NA	promoter-TSS (NM_001256858)	promoter-TSS (NM_001256858)	-51	NM_025126	80196	Hs.292804	NM_025126	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34	protein-coding
3.96856-4	chr17	36452758	36453257	+	0	NA	promoter-TSS (NM_032351)	promoter-TSS (NM_032351)	18	NM_001278279	84311	Hs.537279	NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45	mitochondrial ribosomal protein L45	protein-coding
0.731433-14	chr12	16500769	16501440	+	0	NA	intron (NR_048547, intron 1 of 2)	intron (NR_048547, intron 1 of 2)	392	NM_145791	4257	Hs.389700	NM_020300	ENSG00000008394	MGST1	GST12|MGST|MGST-I	microsomal glutathione S-transferase 1	protein-coding
29.1721-2	chr5	151314578	151315077	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10430	NM_001292000	2741	Hs.121490	NM_000171	ENSG00000145888	GLRA1	HKPX1|STHE	glycine receptor alpha 1	protein-coding
0.550241-11	chr6	4136063	4136562	+	0	NA	promoter-TSS (NM_006117)	promoter-TSS (NM_006117)	6	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
5.34617-6	chr4	119201971	119202470	+	0	NA	3' UTR (NM_003619, exon 13 of 13)	3' UTR (NM_003619, exon 13 of 13)	1875	NR_002963	677809	Hs.744742	NR_002963	ENSG00000275994	SNORA24	ACA24|SNORA24A	small nucleolar RNA, H/ACA box 24	snoRNA
0.168249-2	chr17	54857688	54858187	+	0	NA	Intergenic	Intergenic	53319	NM_001085430	339210	Hs.658949	NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
0.0877392-40	chr1	109419409	109419908	+	0	NA	promoter-TSS (NM_013296)	promoter-TSS (NM_013296)	55	NM_001321038	29899	Hs.584901	NM_013296	ENSG00000121957	GPSM2	CMCS|DFNB82|LGN|PINS	G-protein signaling modulator 2	protein-coding
4.4855-11	chr9	137488805	137489304	+	0	NA	Intergenic	Intergenic	-44597	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	EDSC	collagen type V alpha 1 chain	protein-coding
6.45892-2	chr17	2302737	2303236	+	0	NA	intron (NM_020310, intron 1 of 5)	CpG	1272	NM_020310	4335	Hs.626579	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
7.42321-3	chr4	141070193	141070692	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	4791	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
3.46787-4	chr6	32952434	32952933	+	0	NA	Intergenic	Intergenic	11822	NM_001199456	6046	Hs.75243	NM_005104	ENSG00000204256	BRD2	D6S113E|FSH|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
0.301184-3	chr22	39142134	39142633	+	0	NA	intron (NM_015374, intron 7 of 17)	intron (NM_015374, intron 7 of 17)	9084	NM_001199580	25777	Hs.517622	NM_015374	ENSG00000100242	SUN2	UNC84B	Sad1 and UNC84 domain containing 2	protein-coding
0.181814-2	chr4	157889588	157890087	+	0	NA	intron (NR_036641, intron 1 of 6)	intron (NR_036641, intron 1 of 6)	2709	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
8.56985-7	chr8	62051501	62052000	+	0	NA	Intergenic	CpG	-148775	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
5.52842-4	chr2	149461607	149462106	+	0	NA	intron (NM_015630, intron 2 of 13)	L1MB3|LINE|L1	59296	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
5.40608-6	chr9	88713616	88714115	+	0	NA	intron (NM_177937, intron 1 of 9)	CpG	645	NM_016548	51280	Hs.494337	NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
11.891	chr1	224622259	224622758	+	0	NA	promoter-TSS (NM_001322302)	promoter-TSS (NM_001322302)	-89	NR_136295	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
3.23306	chr1	165796885	165797384	+	0	NA	exon (NM_012474, exon 1 of 7)	exon (NM_012474, exon 1 of 7)	402	NM_012474	7371	Hs.458360	NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
7.42321-13	chr7	49813260	49813759	+	0	NA	5' UTR (NM_198570, exon 1 of 4)	5' UTR (NM_198570, exon 1 of 4)	252	NM_198570	375567	Hs.629302	NM_198570	ENSG00000188730	VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
0.510982	chr9	133556565	133557064	+	0	NA	exon (NM_021619, exon 5 of 5)	exon (NM_021619, exon 5 of 5)	-12333	NM_014285	23404	Hs.654643	NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|hRrp4p|p7	exosome component 2	protein-coding
6.03801-2	chr10	99258223	99258722	+	0	NA	promoter-TSS (NM_001289405)	promoter-TSS (NM_001289405)	79	NM_001289405	64210	Hs.500721	NM_022362	ENSG00000155229	MMS19	MET18|MMS19L|hMMS19	MMS19 homolog, cytosolic iron-sulfur assembly component	protein-coding
8.01343	chr20	44518624	44519123	+	0	NA	promoter-TSS (NR_133656)	promoter-TSS (NR_133656)	90	NM_000308	5476	Hs.609336	NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
3.19664-4	chr16	76533409	76533908	+	0	NA	intron (NM_001322189, intron 16 of 24)	SVA_B|Other|Other	-135237	NR_110934	101928203	Hs.737035	NR_110934	ENSG00000250514	LINC02125	-	long intergenic non-protein coding RNA 2125	ncRNA
3.44862-13	chr10	19498233	19498732	+	0	NA	exon (NM_001142308, exon 18 of 40)	exon (NM_001142308, exon 18 of 40)	160782	NM_001142308	340895	Hs.646734	NM_001142308	ENSG00000204740	MALRD1	C10orf112|DIET1|bA265G8.2	MAM and LDL receptor class A domain containing 1	protein-coding
0.8302-5	chr6	134373069	134373568	+	0	NA	intron (NM_145176, intron 1 of 4)	intron (NM_145176, intron 1 of 4)	471	NM_145176	154091	Hs.486508	NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
23.1426	chr12	117529814	117530313	+	0	NA	intron (NR_031766, intron 1 of 7)	intron (NR_031766, intron 1 of 7)	7188	NR_031766	54997	Hs.525709	NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
5.62249-7	chr6	52227458	52227957	+	0	NA	intron (NM_133367, intron 1 of 1)	CpG	781	NM_133367	85315	Hs.239388	NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
7.4958-3	chr1	211520777	211521276	+	0	NA	intron (NM_145759, intron 1 of 10)	intron (NM_145759, intron 1 of 10)	1320	NM_145759	7188	Hs.523930	NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
20.3574	chr7	154671265	154671764	+	0	NA	intron (NM_001936, intron 20 of 25)	MER34B|LTR|ERV1	-48713	NR_024476	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
1.95861-11	chr7	134959188	134959687	+	0	NA	Intergenic	Intergenic	42706	NM_182489	346673	Hs.592279	NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
17.3283	chr4	166705757	166706256	+	0	NA	Intergenic	Intergenic	-41783	NR_121677	101928131	Hs.406479	NR_121677		LOC101928131	-	uncharacterized LOC101928131	ncRNA
4.57175-2	chr4	36312477	36312976	+	0	NA	intron (NM_001170700, intron 6 of 8)	intron (NM_001170700, intron 6 of 8)	27082	NM_001170700	401124	Hs.363407	NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
20.8145	chr2	97498795	97499294	+	0	NA	3' UTR (NM_017623, exon 8 of 8)	3' UTR (NM_017623, exon 8 of 8)	10714	NM_144994	200539	Hs.643430	NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
2.63603-9	chr8	37887584	37888083	+	0	NA	promoter-TSS (NM_004095)	promoter-TSS (NM_004095)	-187	NM_004095	1978	Hs.411641	NM_004095	ENSG00000187840	EIF4EBP1	4E-BP1|4EBP1|BP-1|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
2.17527	chr3	82049837	82050336	+	0	NA	Intergenic	Intergenic	-239136	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding
0.985417-7	chr1	94702222	94702721	+	0	NA	intron (NM_001328664, intron 1 of 22)	MIR|SINE|MIR	836	NM_001328666	9411	Hs.483238	NM_004815	ENSG00000137962	ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
0.736576-23	chr4	21767275	21767774	+	0	NA	intron (NM_147182, intron 1 of 8)	intron (NM_147182, intron 1 of 8)	-68206	NM_001035003	80333	Hs.655705	NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
1.80456-6	chr1	59118191	59118690	+	0	NA	Intergenic	Intergenic	47307	NM_001085487	114803	Hs.744921	NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB	Myb like, SWIRM and MPN domains 1	protein-coding
4.46117-9	chr6	111003479	111003978	+	0	NA	intron (NM_015076, intron 2 of 12)	intron (NM_015076, intron 2 of 12)	-132096	NM_001287215	262	Hs.159118	NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
1.15771-11	chr19	39600982	39601481	+	0	NA	3' UTR (NM_001004318, exon 13 of 13)	3' UTR (NM_001004318, exon 13 of 13)	-15189	NM_001014834	10298	Hs.20447	NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
4.76254-3	chr1	116960990	116961489	+	0	NA	promoter-TSS (NR_027646)	promoter-TSS (NR_027646)	5	NR_027646	84852	Hs.664752	NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
1.00179-12	chr4	8114326	8114825	+	0	NA	intron (NM_001130083, intron 1 of 20)	intron (NM_001130083, intron 1 of 20)	-40832	NM_001286688	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
0.783135-15	chr12	20373148	20373647	+	0	NA	Intergenic	L1MA4|LINE|L1	-148782	NM_000921	5139	Hs.386791	NM_000921	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB	phosphodiesterase 3A	protein-coding
2.84833-3	chr20	3142855	3143354	+	0	NA	TTS (NM_001282533)	TTS (NM_001282533)	-2548	NM_199415	22888	Hs.654646	NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
3.85103-14	chr12	46766345	46766844	+	0	NA	promoter-TSS (NM_001307936)	promoter-TSS (NM_001307936)	51	NM_001307936	54407	Hs.221847	NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
7.56962-9	chr4	185367233	185367732	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	28244	NM_002199	3660	Hs.654566	NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
11.8842	chr20	56468352	56468851	+	0	NA	Intergenic	Intergenic	-1849	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	mir-4532	microRNA 4532	ncRNA
52.4185	chr1	165445891	165446390	+	0	NA	TTS (NR_026744)	TTS (NR_026744)	-31548	NM_001256570	6258	Hs.26550	NM_006917	ENSG00000143171	RXRG	NR2B3|RXRC	retinoid X receptor gamma	protein-coding
14.023-5	chr2	68019768	68020267	+	0	NA	Intergenic	Intergenic	32677	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
8.99629-10	chr2	179142417	179142916	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	-42305	NM_145739	114880	Hs.318775	NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
7.59451-5	chr14	49346085	49346584	+	0	NA	Intergenic	Intergenic	706800	NM_001032	6235	Hs.156367	NM_001032	ENSG00000213741	RPS29	DBA13|S29	ribosomal protein S29	protein-coding
1.64309-2	chr16	75532723	75533222	+	0	NA	Intergenic	Intergenic	-4046	NM_021615	4166	Hs.655622	NM_021615	ENSG00000183196	CHST6	MCDC1	carbohydrate sulfotransferase 6	protein-coding
0.0744648-20	chr19	36036715	36037214	+	0	NA	promoter-TSS (NR_038396)	promoter-TSS (NR_038396)	-33	NR_038396	100506469	Hs.661816	NR_038396	ENSG00000236144	TMEM147-AS1	-	TMEM147 antisense RNA 1	ncRNA
0.291884-5	chrX	119619435	119619934	+	0	NA	Intergenic	Intergenic	-16480	NM_001122606	3920	Hs.496684	NM_002294	ENSG00000005893	LAMP2	CD107b|LAMP-2|LAMPB|LGP110	lysosomal associated membrane protein 2	protein-coding
1.09579-9	chr16	88937297	88937796	+	0	NA	Intergenic	Intergenic	-4478	NM_001080487	390748	Hs.730522	NM_001080487	ENSG00000205022	PABPN1L	PABPNL1|ePABP2	poly(A) binding protein nuclear 1 like, cytoplasmic	protein-coding
0.614803-2	chr17	62971918	62972417	+	0	NA	promoter-TSS (NR_026903)	promoter-TSS (NR_026903)	-464	NR_026903	201283	Hs.396447	NM_153032	ENSG00000214174	AMZ2P1	-	archaelysin family metallopeptidase 2 pseudogene 1	pseudo
19.9568-8	chr11	60839574	60840073	+	0	NA	Intergenic	Intergenic	-21612	NM_001346456	921	Hs.58685	NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
1.11821-9	chr1	26232679	26233178	+	0	NA	promoter-TSS (NM_001145454)	promoter-TSS (NM_001145454)	17	NR_037481	100500808		NR_037481	ENSG00000117632	MIR3917	mir-3917	microRNA 3917	ncRNA
0.209071-27	chr3	49823812	49824311	+	0	NA	promoter-TSS (NM_001242829)	promoter-TSS (NM_001242829)	-88	NM_001006115	9807	Hs.386168	NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
1.28427-18	chr11	62275956	62276455	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	36954	NM_001346446	79026	Hs.502756	NM_001620	ENSG00000124942	AHNAK	AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
1.19758-6	chr16	85586848	85587347	+	0	NA	Intergenic	CpG	-57932	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
5.25784-3	chr18	60383204	60383703	+	0	NA	exon (NM_194449, exon 1 of 17)	exon (NM_194449, exon 1 of 17)	781	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
9.39302-19	chr10	79793287	79793786	+	0	NA	promoter-TSS (NM_001026)	promoter-TSS (NM_001026)	18	NM_001142283	6229	Hs.280130	NM_001026	ENSG00000138326	RPS24	DBA3|S24	ribosomal protein S24	protein-coding
6.03801-7	chr9	74370632	74371131	+	0	NA	intron (NM_013390, intron 1 of 23)	AluJb|SINE|Alu	12919	NM_013390	23670	Hs.494146	NM_013390	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
3.01899-5	chr14	71288558	71289057	+	0	NA	Intergenic	CpG	-12919	NM_001284230	4293	Hs.445496	NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
0.181814-15	chr2	47420199	47420698	+	0	NA	intron (NR_110208, intron 4 of 4)	MIRb|SINE|MIR	-16373	NM_001305625	805	Hs.468442	NM_001743	ENSG00000143933	CALM2	CAMII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
0.2365-9	chr7	140510901	140511400	+	0	NA	intron (NM_004333, intron 3 of 17)	LTR55|LTR|ERV	113414	NM_004333	673	Hs.550061	NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
19.9568-11	chr20	24851969	24852468	+	0	NA	Intergenic	Intergenic	-77648	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
0.254883-53	chr7	27169557	27170056	+	0	NA	exon (NM_002141, exon 1 of 2)	exon (NM_002141, exon 1 of 2)	593	NM_002141	3201	Hs.533357	NM_002141	ENSG00000197576	HOXA4	HOX1|HOX1D	homeobox A4	protein-coding
0.555173-13	chr14	23479588	23480087	+	0	NA	promoter-TSS (NM_001130706)	promoter-TSS (NM_001130706)	-427	NM_021944	60686	Hs.255874	NM_021944	ENSG00000100802	C14orf93	-	chromosome 14 open reading frame 93	protein-coding
1.92465-12	chr8	53161992	53162491	+	0	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	55319	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
0.0788851-16	chr16	70720980	70721479	+	0	NA	TTS (NM_018052)	TTS (NM_018052)	-1275	NM_138383	92154	Hs.432387	NM_138383	ENSG00000132613	MTSS1L	ABBA|ABBA-1|ABBA1	MTSS1L, I-BAR domain containing	protein-coding
4.53457-7	chr9	101226951	101227450	+	0	NA	intron (NM_005458, intron 6 of 18)	SVA_A|Other|Other	-209197	NM_018421	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
0.93665-18	chr13	71028038	71028537	+	0	NA	Intergenic	L1MEc|LINE|L1	-345662	NM_020866	57626	Hs.508201	NM_020866	ENSG00000150361	KLHL1	MRP2	kelch like family member 1	protein-coding
1.12946-17	chr14	53019118	53019617	+	0	NA	promoter-TSS (NM_001160047)	promoter-TSS (NM_001160047)	-66	NM_001160047	57544	Hs.532609	NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
19.4692-4	chr3	25033004	25033503	+	0	NA	intron (NM_001290216, intron 2 of 10)	intron (NM_001290216, intron 2 of 10)	162439	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
7.90485-2	chr1	236087643	236088142	+	0	NA	Intergenic	Intergenic	-40884	NR_102436	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
1.26098-23	chr16	5007578	5008077	+	0	NA	promoter-TSS (NM_014692)	promoter-TSS (NM_014692)	-491	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
0.070049-11	chr16	89984130	89984629	+	0	NA	promoter-TSS (NM_002386)	promoter-TSS (NM_002386)	92	NM_002386	4157	Hs.513829	NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
0.609802-13	chr15	70637027	70637526	+	0	NA	Intergenic	Intergenic	241669	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA
0.0130484-53	chr12	31920915	31921414	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	24011	NM_001013699	440093	Hs.448697	NM_001013699	ENSG00000188375	H3F3C	H3.5	H3 histone family member 3C	protein-coding
0.809219-21	chr12	1905142	1905641	+	0	NA	intron (NM_172364, intron 35 of 37)	CpG	-24042	NM_001163925	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
0.291884-22	chr1	220101792	220102291	+	0	NA	promoter-TSS (NR_046437)	promoter-TSS (NR_046437)	-48	NR_046437	55532	Hs.284450	NM_018713	ENSG00000196660	SLC30A10	HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30 member 10	protein-coding
3.63512-12	chr8	119007275	119007774	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	116534	NM_000127	2131	Hs.492618	NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
3.96856-5	chr1	31867412	31867911	+	0	NA	Intergenic	Intergenic	-14751	NM_001199038	347735	Hs.270655	NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
9.1364-4	chr1	110072895	110073394	+	0	NA	Intergenic	Intergenic	-9350	NM_031936	83873	Hs.709782	NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
0.545314-18	chr12	12157313	12157812	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-66316	NM_138723	79370	Hs.210343	NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
2.66001-13	chr13	85722062	85722561	+	0	NA	promoter-TSS (NR_126383)	promoter-TSS (NR_126383)	-119	NR_126383	104355140		NR_126383	ENSG00000226370	LINC00375	-	long intergenic non-protein coding RNA 375	ncRNA
7.21246-2	chr17	79978875	79979374	+	0	NA	intron (NM_001330536, intron 1 of 4)	intron (NM_001330536, intron 1 of 4)	1661	NM_001271006	201254	Hs.37616	NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
8.72895-2	chr4	62857947	62858446	+	0	NA	intron (NM_015236, intron 18 of 24)	intron (NM_015236, intron 18 of 24)	169287	NR_110595	101927186	Hs.723269	NR_110595		ADGRL3-AS1	LPHN3-AS1	adhesion G protein-coupled receptor L3 antisense RNA 1	ncRNA
0.385789-16	chr19	588360	588859	+	0	NA	Intergenic	CpG	-1284	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium channel 2	protein-coding
3.41035-17	chr7	117468084	117468583	+	0	NA	intron (NM_033427, intron 2 of 22)	intron (NM_033427, intron 2 of 22)	45228	NM_033427	83992	Hs.592285	NM_033427	ENSG00000077063	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
0.118872-53	chr17	61513206	61513705	+	0	NA	exon (NM_001915, exon 3 of 6)	exon (NM_001915, exon 3 of 6)	4117	NM_001330421	1534	Hs.355264	NM_001915	ENSG00000008283	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
3.8934-7	chr19	38581333	38581832	+	0	NA	intron (NM_015073, intron 4 of 21)	intron (NM_015073, intron 4 of 21)	133308	NM_001135155	8193	Hs.631576	NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	double PHD fingers 1	protein-coding
8.8941-6	chr8	63476568	63477067	+	0	NA	intron (NR_130764, intron 1 of 6)	intron (NR_130764, intron 1 of 6)	315316	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding
4.05607-9	chr5	35924921	35925420	+	0	NA	intron (NM_144647, intron 1 of 4)	intron (NM_144647, intron 1 of 4)	13567	NM_001042625	133690	Hs.55150	NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
3.10691-7	chr12	12939758	12940257	+	0	NA	exon (NM_001130415, exon 2 of 2)	exon (NM_001130415, exon 2 of 2)	1466	NM_030817	81575	Hs.23388	NM_030817	ENSG00000178878	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
3.47754	chr6	5303419	5303918	+	0	NA	intron (NM_006567, intron 1 of 6)	intron (NM_006567, intron 1 of 6)	42109	NM_006567	10667	Hs.484547	NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
1.29596-2	chr16	14595406	14595905	+	0	NA	intron (NM_002582, intron 21 of 23)	intron (NM_002582, intron 21 of 23)	128473	NM_001242992	5073	Hs.253197	NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
1.4813-13	chr9	126147557	126148056	+	0	NA	intron (NM_020946, intron 20 of 21)	intron (NM_020946, intron 20 of 21)	16748	NR_104603	286204	Hs.568340	NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs 2, cell polarity complex component	protein-coding
5.59091-9	chr3	193974913	193975412	+	0	NA	non-coding (NR_125402, exon 4 of 4)	non-coding (NR_125402, exon 4 of 4)	-7220	NR_125403	100505920	Hs.436654	NR_125403	ENSG00000225742	LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
0.268721-18	chr12	101884049	101884548	+	0	NA	Intergenic	Intergenic	15099	NM_152323	121599	Hs.577097	NM_152323	ENSG00000166211	SPIC	SPI-C	Spi-C transcription factor	protein-coding
0.352691-9	chr12	125473382	125473881	+	0	NA	promoter-TSS (NM_032656)	promoter-TSS (NM_032656)	36	NM_032656	57647	Hs.107382	NM_032656	ENSG00000150990	DHX37	DDX37	DEAH-box helicase 37	protein-coding
0.385789-45	chr18	39351889	39352388	+	0	NA	Intergenic	Intergenic	-183025	NM_001308020	5289	Hs.464971	NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
3.96856	chr6	90085076	90085575	+	0	NA	intron (NM_021244, intron 5 of 6)	intron (NM_021244, intron 5 of 6)	-22706	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
9.95679-7	chr4	96437722	96438221	+	0	NA	intron (NM_003728, intron 1 of 15)	intron (NM_003728, intron 1 of 15)	32390	NM_003728	8633	Hs.388565	NM_003728	ENSG00000182168	UNC5C	UNC5H3	unc-5 netrin receptor C	protein-coding
14.2136-2	chr2	55452055	55452554	+	0	NA	intron (NM_152385, intron 2 of 12)	intron (NM_152385, intron 2 of 12)	-6735	NM_001135592	6233	Hs.311640	NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80	ribosomal protein S27a	protein-coding
1.81774-9	chr3	24233403	24233902	+	0	NA	intron (NM_001252634, intron 5 of 11)	intron (NM_001252634, intron 5 of 11)	40837	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA
3.93619-14	chr7	148660407	148660906	+	0	NA	Intergenic	AluJo|SINE|Alu	-23963	NR_130107	102723099	Hs.621982	NR_130107	ENSG00000281189	GHET1	lncRNA-GHET1	gastric carcinoma proliferation enhancing transcript 1	ncRNA
0.777937-6	chr3	150439241	150439740	+	0	NA	Intergenic	Intergenic	17282	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
2.22573-5	chr12	9800422	9800921	+	0	NA	promoter-TSS (NR_002814)	promoter-TSS (NR_002814)	28	NR_046446	374443	Hs.569124	NR_002814	ENSG00000256594	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
0.172766-29	chrX	56791012	56791511	+	0	NA	intron (NR_015367, intron 2 of 2)	intron (NR_015367, intron 2 of 2)	-27244	NR_002308	442454	Hs.663220	NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
1.15205-6	chr19	33555202	33555701	+	0	NA	intron (NM_033103, intron 1 of 14)	CpG	373	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	rhophilin Rho GTPase binding protein 2	protein-coding
13.6856	chr9	77112099	77112598	+	0	NA	promoter-TSS (NM_006914)	promoter-TSS (NM_006914)	96	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR related orphan receptor B	protein-coding
3.65523-7	chr11	74064294	74064793	+	0	NA	intron (NM_173582, intron 5 of 13)	SVA_B|Other|Other	-41822	NM_001288748	283208	Hs.660541	NM_182904	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase subunit alpha 3	protein-coding
6.77781-4	chr11	134449206	134449705	+	0	NA	Intergenic	Intergenic	143079	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	ncRNA
0.888424-39	chr1	17034158	17034657	+	0	NA	non-coding (NR_026567, exon 2 of 11)	non-coding (NR_026567, exon 2 of 11)	12245	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	dJ1182A14.1	espin pseudogene	pseudo
0.070049-58	chr3	31573337	31573836	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-407	NM_178862	201595	Hs.475812	NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3B, catalytic subunit of the oligosaccharyltransferase complex	protein-coding
14.5842-5	chr4	37769104	37769603	+	0	NA	Intergenic	Intergenic	-58929	NM_018290	55276	Hs.23363	NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
3.68556-4	chr5	31999498	31999997	+	0	NA	intron (NM_178140, intron 4 of 24)	intron (NM_178140, intron 4 of 24)	-63482	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
1.72631-17	chr11	95198961	95199460	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-233505	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
3.45823	chr1	33802127	33802626	+	0	NA	intron (NM_001330488, intron 7 of 12)	7SK|RNA|RNA	-4283	NR_037400	100500853		NR_037400	ENSG00000134686	MIR3605	mir-3605	microRNA 3605	ncRNA
0.614803-7	chr21	47563704	47564203	+	0	NA	intron (NM_006657, intron 10 of 14)	LTR13|LTR|ERVK	11528	NM_001320412	10841	Hs.415846	NM_006657	ENSG00000160282	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
1.82435-12	chr14	61115554	61116053	+	0	NA	exon (NM_005982, exon 1 of 2)	exon (NM_005982, exon 1 of 2)	352	NM_005982	6495	Hs.633506	NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
0.296531-145	chr7	1447372	1447871	+	0	NA	Intergenic	CpG	51488	NM_182924	79778	Hs.376617	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
8.12479-6	chr17	37926115	37926614	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	8114	NM_001284516	22806	Hs.371680	NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
2.34331-2	chr12	54752563	54753062	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	5337	NR_120486	102724050	Hs.670941	NR_120486	ENSG00000258137	LOC102724050	-	uncharacterized LOC102724050	ncRNA
1.81774-14	chr7	114194828	114195327	+	0	NA	intron (NR_033767, intron 4 of 17)	intron (NR_033767, intron 4 of 17)	-98323	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA
32.7572	chr5	19855520	19856019	+	0	NA	intron (NM_001291956, intron 4 of 14)	intron (NM_001291956, intron 4 of 14)	30612	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
2.27678-4	chr4	145331385	145331884	+	0	NA	Intergenic	Intergenic	-235514	NM_022475	64399	Hs.507991	NM_022475	ENSG00000164161	HHIP	HIP	hedgehog interacting protein	protein-coding
0.560111-12	chrX	153616289	153616788	+	0	NA	Intergenic	Intergenic	8941	NM_000117	2010	Hs.522823	NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
0.496351-23	chr17	74068428	74068927	+	0	NA	promoter-TSS (NM_001260502)	promoter-TSS (NM_001260502)	-70	NR_048541	6730	Hs.514495	NM_014230	ENSG00000167881	SRP68	-	signal recognition particle 68	protein-coding
2.33587-5	chr12	10765799	10766298	+	0	NA	promoter-TSS (NM_001300739)	promoter-TSS (NM_001300739)	160	NM_001319985	55110	Hs.104650	NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex core component	protein-coding
0.404816-7	chr9	100153685	100154184	+	0	NA	non-coding (NR_026847, exon 6 of 6)	non-coding (NR_026847, exon 6 of 6)	5039	NR_026847	286359	Hs.132262	NM_182600		LOC286359	-	uncharacterized LOC286359	ncRNA
5.48214-12	chr8	1771725	1772224	+	0	NA	promoter-TSS (NM_014629)	promoter-TSS (NM_014629)	-168	NM_001308153	9639	Hs.98594	NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding
0.501223-5	chr11	36279793	36280713	+	0	NA	Intergenic	Intergenic	30746	NM_014186	29099	Hs.279836	NM_014186	ENSG00000110442	COMMD9	HSPC166	COMM domain containing 9	protein-coding
3.7059-3	chr8	138505004	138505503	+	0	NA	Intergenic	Intergenic	-79422	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
1.11821-25	chr19	49482043	49482542	+	0	NA	intron (NM_001161587, intron 7 of 14)	MIR|SINE|MIR	13726	NM_000146	2512	Hs.433670	NM_000146	ENSG00000087086	FTL	LFTD|NBIA3	ferritin light chain	protein-coding
3.58526-3	chr14	91159652	91160151	+	0	NA	intron (NM_001320421, intron 6 of 20)	intron (NM_001320421, intron 6 of 20)	-3776	NR_135190	105370622	Hs.662373	NR_135190	ENSG00000258716	LOC105370622	-	uncharacterized LOC105370622	ncRNA
0.109954-4	chr8	41739453	41739952	+	0	NA	intron (NM_001142446, intron 1 of 42)	MIRc|SINE|MIR	14578	NM_001142446	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
4.04504	chr4	109134213	109134712	+	0	NA	Intergenic	Intergenic	41186	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
2.34331-4	chrX	102358751	102359250	+	0	NA	Intergenic	SVA_D|Other|Other	-10978	NM_022052	56000	Hs.60386	NM_022052	ENSG00000147206	NXF3	-	nuclear RNA export factor 3	protein-coding
1.37869-18	chr2	148437501	148438000	+	0	NA	Intergenic	Intergenic	-164336	NM_001278580	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
1.59894-7	chr1	211593664	211594163	+	0	NA	intron (NR_026761, intron 4 of 5)	Tigger4|DNA|TcMar-Tigger	37816	NR_026761	84791	Hs.523932	NM_032705		LINC00467	C1orf97	long intergenic non-protein coding RNA 467	ncRNA
0.51587-10	chr9	130370438	130370937	+	0	NA	Intergenic	CpG	-3799	NM_003165	6812	Hs.288229	NM_003165	ENSG00000136854	STXBP1	MUNC18-1|NSEC1|P67|RBSEC1|UNC18	syntaxin binding protein 1	protein-coding
0.282604	chr8	128529429	128529928	+	0	NA	Intergenic	Intergenic	-35294	NR_024393	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
5.59091-8	chr6	42421350	42421849	+	0	NA	Intergenic	Intergenic	-1810	NM_001297573	55809	Hs.485392	NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
10.7624-5	chr4	145505491	145505990	+	0	NA	Intergenic	Intergenic	-61408	NM_022475	64399	Hs.507991	NM_022475	ENSG00000164161	HHIP	HIP	hedgehog interacting protein	protein-coding
12.0204-2	chr11	119252155	119252654	+	0	NA	promoter-TSS (NM_001243759)	promoter-TSS (NM_001243759)	32	NM_004205	9099	Hs.524085	NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
0.731433-17	chr13	110601692	110602191	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-103691	NR_126387	104355146	Hs.508690	NR_126387	ENSG00000231428	LINC00396	-	long intergenic non-protein coding RNA 396	ncRNA
0.423927-11	chr9	102501251	102501750	+	0	NA	intron (NR_109802, intron 2 of 6)	L4|LINE|RTE	80671	NR_109802	101928438	Hs.637767	NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
1.81774	chr12	125023258	125023757	+	0	NA	intron (NM_001077261, intron 1 of 47)	MIRb|SINE|MIR	28503	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
0.414361-11	chr13	45011051	45011550	+	0	NA	promoter-TSS (NM_006022)	promoter-TSS (NM_006022)	90	NM_001243797	8848	Hs.436383	NM_006022	ENSG00000102804	TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
37.67	chr3	97298165	97298664	+	0	NA	intron (NM_173655, intron 9 of 12)	intron (NM_173655, intron 9 of 12)	139977	NM_001278300	285220	Hs.272208	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
1.48742	chr10	113943303	113943802	+	0	NA	promoter-TSS (NM_020918)	promoter-TSS (NM_020918)	-15	NM_001244949	57678	Hs.42586	NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
0.670192-4	chrX	20401527	20402026	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-117026	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
43.4008	chr8	94858794	94859293	+	0	NA	Intergenic	Intergenic	69304	NR_039602	100616169		NR_039602	ENSG00000264448	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
11.3312	chr9	101068939	101069438	+	0	NA	intron (NM_005458, intron 14 of 18)	MLT1J|LTR|ERVL-MaLR	-51185	NM_018421	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
0.101054-9	chr6	131799783	131800282	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-94312	NM_000045	383	Hs.440934	NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
2.52588-17	chr14	100659470	100659969	+	0	NA	Intergenic	Intergenic	-33707	NM_206918	123099	Hs.159643	NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
3.49692-17	chr11	76909565	76910064	+	0	NA	intron (NM_001127180, intron 34 of 48)	intron (NM_001127180, intron 34 of 48)	70498	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
1.29596-12	chr11	98640272	98640771	+	0	NA	Intergenic	SVA_B|Other|Other	-251185	NM_001243271	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
2.54925-12	chr3	139259543	139260042	+	0	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	-1121	NM_001130993	5947	Hs.529571	NM_002899	ENSG00000114115	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1	protein-coding
7.32828-2	chr1	112462749	112463248	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	10719	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA
0.315171-6	chr9	114936661	114937463	+	0	NA	intron (NM_001282640, intron 1 of 17)	CpG	515	NM_022486	64420	Hs.494827	NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
0.0436481-5	chr16	71757824	71758323	+	0	NA	intron (NM_015020, intron 1 of 18)	CpG	531	NM_015020	23035	Hs.709458	NM_015020	ENSG00000040199	PHLPP2	PHLPPL|PPM3B	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
0.2365-24	chr2	100879259	100879758	+	0	NA	Intergenic	Intergenic	54792	NR_103730	150577	Hs.434127	NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
0.496351-48	chr7	128520368	128520867	+	0	NA	intron (NM_001135914, intron 31 of 37)	intron (NM_001135914, intron 31 of 37)	14215	NM_001195150	100130705	Hs.641532	NM_001195150	ENSG00000272899	LOC100130705	-	uncharacterized LOC100130705	protein-coding
5.83359-6	chr9	37800403	37801261	+	0	NA	promoter-TSS (NM_024345)	promoter-TSS (NM_024345)	49	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
0.145735-14	chr10	23384113	23384612	+	0	NA	promoter-TSS (NM_012228)	promoter-TSS (NM_012228)	-65	NM_012228	22921	Hs.461420	NM_012228	ENSG00000148450	MSRB2	CBS-1|CBS1|CGI-131|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
2.08309	chr10	74034354	74034853	+	0	NA	exon (NM_019058, exon 3 of 3)	exon (NM_019058, exon 3 of 3)	926	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
1.18615	chr13	41634742	41635241	+	0	NA	promoter-TSS (NM_007187)	promoter-TSS (NM_007187)	-706	NM_007187	11193	Hs.411300	NM_007187	ENSG00000120688	WBP4	FBP21	WW domain binding protein 4	protein-coding
4.52225-8	chr4	40520362	40520861	+	0	NA	intron (NM_001098634, intron 2 of 6)	MIR3|SINE|MIR	-2621	NM_019027	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
1.54902-7	chr4	176308140	176308639	+	0	NA	Intergenic	L1PA8A|LINE|L1	400438	NM_001261448	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
1.45087-2	chr6	44186890	44187389	+	0	NA	promoter-TSS (NM_001304462)	promoter-TSS (NM_001304462)	-103	NM_001304465	2030	Hs.25450	NM_004955	ENSG00000112759	SLC29A1	ENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
1.12946-18	chr1	27852361	27852860	+	0	NA	Intergenic	Intergenic	-35912	NM_006990	10163	Hs.469244	NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family member 2	protein-coding
8.99629-7	chr8	59969149	59969648	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	62369	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
2.98432-18	chr1	83863870	83864369	+	0	NA	Intergenic	Intergenic	-412228	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
10.9098-4	chr14	19641921	19642420	+	0	NA	Intergenic	Intergenic	-7862	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
0.11441-20	chr4	54796083	54796582	+	0	NA	Intergenic	Intergenic	57117	NR_027153	402176	Hs.452943	NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
0.0612309-17	chr17	43069926	43070425	+	0	NA	Intergenic	Intergenic	-24531	NM_006688	10882	Hs.134012	NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF	complement C1q like 1	protein-coding
4.42493-9	chr1	163893263	163893762	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-500531	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo
17.5203	chr20	31999004	31999503	+	0	NA	intron (NM_003098, intron 5 of 7)	L2c|LINE|L2	-9878	NM_001278167	51654	Hs.435952	NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
29.393	chr3	189523971	189524470	+	0	NA	intron (NM_001329146, intron 1 of 10)	intron (NM_001329146, intron 1 of 10)	16771	NM_001329149	8626	Hs.137569	NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
9.70616-12	chr5	165593079	165593578	+	0	NA	Intergenic	Intergenic	760047	NR_108020	102557615		NR_108020	ENSG00000254130	LINC01947	CTB-7E3.1	long intergenic non-protein coding RNA 1947	ncRNA
3.72634-2	chr9	35116072	35116571	+	0	NA	promoter-TSS (NM_025182)	promoter-TSS (NM_025182)	-352	NR_134455	80256	Hs.301696	NM_025182	ENSG00000005238	FAM214B	KIAA1539	family with sequence similarity 214 member B	protein-coding
0.118872-2	chr9	74818099	74818598	+	0	NA	intron (NM_004293, intron 3 of 13)	intron (NM_004293, intron 3 of 13)	54081	NM_004293	9615	Hs.494163	NM_004293	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
7.59451-6	chr6	33926585	33927084	+	0	NA	Intergenic	Intergenic	40994	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA
0.589858-4	chr11	57424833	57425332	+	0	NA	promoter-TSS (NM_006831)	promoter-TSS (NM_006831)	-134	NM_001142597	10978	Hs.523687	NM_006831	ENSG00000172409	CLP1	HEAB|hClp1	cleavage and polyadenylation factor I subunit 1	protein-coding
30.3152	chr20	13624154	13624653	+	0	NA	Intergenic	L1PA15|LINE|L1	-4820	NR_136628	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	taspase 1	protein-coding
0.772745-12	chr8	38571727	38572226	+	0	NA	Intergenic	Intergenic	-13728	NM_001330521	6867	Hs.279245	NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
0.757207-9	chr1	229546258	229546757	+	0	NA	Intergenic	7SK|RNA|RNA	23336	NM_001100	58	Hs.1288	NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM	actin, alpha 1, skeletal muscle	protein-coding
0.555173-26	chr5	140998452	140998951	+	0	NA	promoter-TSS (NM_005219)	promoter-TSS (NM_005219)	-79	NM_005219	1729	Hs.529451	NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1	diaphanous related formin 1	protein-coding
1.07905-7	chr4	140855496	140855995	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	219488	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
1.59894-11	chr15	31657973	31658472	+	0	NA	intron (NM_001302461, intron 1 of 1)	intron (NM_001302461, intron 1 of 1)	39164	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
0.385789-47	chr17	72888472	72888971	+	0	NA	exon (NM_178128, exon 3 of 7)	exon (NM_178128, exon 3 of 7)	1188	NM_178128	283985	Hs.448845	NM_178128	ENSG00000172782	FADS6	FP18279	fatty acid desaturase 6	protein-coding
8.86057-9	chrX	62961092	62961591	+	0	NA	intron (NM_001330495, intron 2 of 10)	intron (NM_001330495, intron 2 of 10)	13690	NM_001173480	23229	Hs.54697	NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
0.47692-29	chr19	19170884	19171383	+	0	NA	Intergenic	Intergenic	-3637	NM_001321544	284439	Hs.303669	NM_178526	ENSG00000181035	SLC25A42	-	solute carrier family 25 member 42	protein-coding
1.70053-10	chr12	7341056	7341555	+	0	NA	promoter-TSS (NM_001131026)	promoter-TSS (NM_001131026)	-454	NM_001131026	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
2.36572-8	chr10	65281586	65282085	+	0	NA	promoter-TSS (NM_001318154)	promoter-TSS (NM_001318154)	0	NM_001318154	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
1.87755-8	chr12	12965949	12966448	+	0	NA	promoter-TSS (NM_016355)	promoter-TSS (NM_016355)	-82	NM_201224	51202	Hs.719938	NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
0.414361-22	chr2	16689328	16689827	+	0	NA	Intergenic	CpG	157557	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding
0.675262-13	chrX	20285300	20285799	+	0	NA	promoter-TSS (NM_004586)	promoter-TSS (NM_004586)	-799	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
0.589858-19	chr10	65417588	65418087	+	0	NA	Intergenic	Intergenic	-136002	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
1.49967-19	chr1	210405611	210406110	+	0	NA	promoter-TSS (NM_019605)	promoter-TSS (NM_019605)	-335	NM_019605	56256	Hs.600545	NM_019605	ENSG00000082497	SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
72.4949	chr1	218422772	218423271	+	0	NA	Intergenic	Intergenic	-35608	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
5.96879-6	chr3	131671612	131672111	+	0	NA	intron (NM_001289112, intron 1 of 15)	SVA_D|Other|Other	32914	NR_049890	100847040		NR_049890	ENSG00000265859	MIR5704	-	microRNA 5704	ncRNA
3.18759-16	chr8	139948231	139948730	+	0	NA	Intergenic	Intergenic	-22231	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
13.8934	chr22	36980646	36981145	+	0	NA	intron (NM_006078, intron 2 of 3)	intron (NM_006078, intron 2 of 3)	-55618	NM_003753	8664	Hs.55682	NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
0.296531-8	chr20	33413437	33413936	+	0	NA	promoter-TSS (NM_014071)	promoter-TSS (NM_014071)	-234	NM_014071	23054	Hs.368971	NM_014071	ENSG00000198646	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
1.18045-4	chr7	55433783	55434282	+	0	NA	intron (NM_018697, intron 1 of 8)	CpG	891	NM_018697	55915	Hs.595384	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like 2	protein-coding
1.64944-11	chr12	117933025	117933524	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-133667	NM_000620	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
4.23659	chr2	223520715	223521214	+	0	NA	non-coding (NR_130154, exon 1 of 18)	non-coding (NR_130154, exon 1 of 18)	110	NM_005687	10056	Hs.471452	NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|PheHB|PheRS	phenylalanyl-tRNA synthetase beta subunit	protein-coding
0.990869-17	chr1	26324398	26324897	+	0	NA	promoter-TSS (NM_000437)	promoter-TSS (NM_000437)	1	NM_000437	5051	Hs.477083	NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
0.172766-19	chr3	193544128	193544627	+	0	NA	Intergenic	Intergenic	167650	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
0.296531-67	chrX	110038833	110039332	+	0	NA	promoter-TSS (NM_145234)	promoter-TSS (NM_145234)	-6	NM_145234	91851	Hs.496587	NM_145234	ENSG00000101938	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin like 1	protein-coding
7.07744-2	chr1	113317074	113317573	+	0	NA	Intergenic	SVA_F|Other|Other	54134	NM_001004440	284467	Hs.439116	NM_182759	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 member A3, C-C motif chemokine like	protein-coding
2.39578-11	chr11	111173039	111173538	+	0	NA	intron (NM_001136105, intron 2 of 4)	intron (NM_001136105, intron 2 of 4)	-2331	NM_001302645	399948	Hs.729225	NM_207429		COLCA1	C11orf92|CASC12|LOH11CR1F	colorectal cancer associated 1	protein-coding
7.77284-4	chr10	79286435	79286934	+	0	NA	intron (NM_001322832, intron 1 of 27)	intron (NM_001322832, intron 1 of 27)	110893	NM_001322832	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
1.33713-6	chr17	19609357	19609856	+	0	NA	intron (NR_135624, intron 9 of 15)	intron (NR_135624, intron 9 of 15)	10437	NR_135625	146802	Hs.126830	NM_152908	ENSG00000180638	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	solute carrier family 47 member 2	protein-coding
0.540393-54	chr2	10260415	10260914	+	0	NA	Intergenic	CpG	-2031	NM_001165931	6241	Hs.226390	NM_001034	ENSG00000171848	RRM2	R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
0.467237-20	chr10	130278882	130279381	+	0	NA	Intergenic	Intergenic	194917	NR_120619	101927381	Hs.523342	NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
0.273344-18	chr3	97907306	97907805	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	20011	NM_001005515	403274	Hs.554713	NM_001005515	ENSG00000233412	OR5H15	-	olfactory receptor family 5 subfamily H member 15	protein-coding
1.74574-5	chr9	76937497	76937996	+	0	NA	Intergenic	Intergenic	-48701	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
4.57175-11	chr5	134827147	134827646	+	0	NA	Intergenic	CpG	-39307	NM_001099221	497189	Hs.552091	NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
8.8941-11	chr6	136871728	136872227	+	0	NA	promoter-TSS (NM_003980)	promoter-TSS (NM_003980)	-20	NM_003980	9053	Hs.486548	NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
0.877779-22	chr2	70315042	70315541	+	0	NA	exon (NM_006196, exon 1 of 1)	exon (NM_006196, exon 1 of 1)	706	NM_006196	5093	Hs.2853	NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
32.1681	chr3	126709588	126710087	+	0	NA	intron (NM_032242, intron 1 of 30)	intron (NM_032242, intron 1 of 30)	2400	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
0.0833099-9	chr6	96463074	96463573	+	0	NA	promoter-TSS (NM_006581)	promoter-TSS (NM_006581)	-522	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
6.0206	chr4	105416075	105416574	+	0	NA	promoter-TSS (NM_025212)	promoter-TSS (NM_025212)	-266	NR_132741	80319	Hs.12248	NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
1.9044-9	chr9	116411258	116411757	+	0	NA	Intergenic	Intergenic	55073	NM_001276262	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
6.28932-16	chr5	83607322	83607821	+	0	NA	intron (NM_001278642, intron 1 of 9)	SVA_D|Other|Other	73114	NM_001278642	10085	Hs.482730	NM_005711	ENSG00000164176	EDIL3	DEL1	EGF like repeats and discoidin domains 3	protein-coding
0.783135-30	chr8	126219810	126220309	+	0	NA	intron (NM_173685, intron 5 of 7)	MLT1H|LTR|ERVL-MaLR	115976	NM_173685	286053	Hs.388297	NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
4.68521-11	chr20	62496180	62496679	+	0	NA	promoter-TSS (NM_001243895)	promoter-TSS (NM_001243895)	-152	NM_199361	7165	Hs.473296	NM_003288	ENSG00000101150	TPD52L2	D54|TPD54	tumor protein D52 like 2	protein-coding
23.098	chr8	53064176	53064675	+	0	NA	intron (NM_014682, intron 15 of 25)	intron (NM_014682, intron 15 of 25)	-42497	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
6.9897-3	chr7	71461196	71461695	+	0	NA	intron (NM_001017440, intron 4 of 5)	L1PA10|LINE|L1	340763	NM_001017440	83698	Hs.592750	NM_031468	ENSG00000183166	CALN1	CABP8	calneuron 1	protein-coding
0.888424-15	chrUn_gl000234	36140	36639	+	0	NA	NA	Intergenic	NA	NA								
1.0513-9	chr8	134297136	134297635	+	0	NA	intron (NM_006096, intron 1 of 15)	intron (NM_006096, intron 1 of 15)	12162	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
0.310503-17	chr9	34379343	34379842	+	0	NA	intron (NM_032596, intron 6 of 6)	CpG	2006	NM_147169	84688	Hs.50334	NM_032596	ENSG00000164972	C9orf24	CBE1|NYD-SP22|SMRP1|bA573M23.4	chromosome 9 open reading frame 24	protein-coding
4.65974-16	chr1	102006208	102006707	+	0	NA	Intergenic	Intergenic	217064	NR_126402	104355286	Hs.568671	NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
10.3668	chr4	183784013	183784512	+	0	NA	Intergenic	Intergenic	54368	NM_001921	1635	Hs.183850	NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
1.10698-5	chr1	145515847	145516346	+	0	NA	promoter-TSS (NM_003846)	promoter-TSS (NM_003846)	-20	NR_002328	114814	Hs.356873	NM_057163	ENSG00000211451	GNRHR2	GnRH-II-R	gonadotropin releasing hormone receptor 2 (pseudogene)	pseudo
0.599818-21	chr19	18267937	18268901	+	0	NA	intron (NM_005027, intron 2 of 15)	MIRc|SINE|MIR	4431	NM_005027	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
18.2974-3	chr20	22565335	22565834	+	0	NA	promoter-TSS (NM_021784)	promoter-TSS (NM_021784)	-483	NM_021784	3170	Hs.155651	NM_021784	ENSG00000125798	FOXA2	HNF3B|TCF3B	forkhead box A2	protein-coding
0.0612309-22	chr6	170862682	170863181	+	0	NA	promoter-TSS (NM_003194)	promoter-TSS (NM_003194)	-490	NM_003194	6908	Hs.590872	NM_003194	ENSG00000112592	TBP	GTF2D|GTF2D1|HDL4|SCA17|TFIID	TATA-box binding protein	protein-coding
2.58848-17	chr2	211611448	211611947	+	0	NA	Intergenic	LTR14B|LTR|ERVK	129402	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
0.675262-30	chr12	48167144	48167643	+	0	NA	intron (NM_017842, intron 1 of 2)	CpG	426	NM_017842	55652	Hs.438867	NM_017842	ENSG00000211584	SLC48A1	HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
1.67491-21	chr9	20041568	20042067	+	0	NA	Intergenic	Intergenic	-254800	NM_020344	25769	Hs.283014	NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
1.44481-16	chr3	73551738	73552237	+	0	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-18486	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
2.81498-4	chr6	114053718	114054217	+	0	NA	Intergenic	Intergenic	-82690	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA
3.02771-8	chr10	94735923	94736422	+	0	NA	intron (NM_001319200, intron 14 of 17)	SVA_D|Other|Other	-84849	NM_183374	340665	Hs.369993	NM_183374	ENSG00000187553	CYP26C1	FFDD4	cytochrome P450 family 26 subfamily C member 1	protein-coding
5.70248-15	chr2	91763743	91764242	+	0	NA	Intergenic	Intergenic	83983	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
7.23538-7	chr1	226925582	226926081	+	0	NA	intron (NM_002221, intron 1 of 7)	CpG	1045	NM_002221	3707	Hs.528087	NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
3.83-12	chr2	120980532	120981031	+	0	NA	5' UTR (NM_024121, exon 1 of 1)	5' UTR (NM_024121, exon 1 of 1)	203	NM_024121	79134	Hs.376722	NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
0.0305075-61	chr14	78102123	78102622	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-19262	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
3.54578-2	chr17	8022816	8023315	+	0	NA	promoter-TSS (NM_001165960)	promoter-TSS (NM_001165960)	-831	NM_001165960	59344	Hs.232770	NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
1.60522-9	chr14	35591846	35592345	+	0	NA	promoter-TSS (NR_130972)	promoter-TSS (NR_130972)	337	NM_001256680	9692	Hs.458487	NM_014672	ENSG00000100890	KIAA0391	MRPP3|PRORP	KIAA0391	protein-coding
1.70053-24	chr9	136822770	136823269	+	0	NA	intron (NM_001134398, intron 1 of 29)	LTR5_Hs|LTR|ERVK	34427	NM_001134398	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
24.5469-2	chr1	222081803	222082302	+	0	NA	Intergenic	Intergenic	-68044	NR_125989	101929771	Hs.557001	NR_125989	ENSG00000227925	LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
0.145735-5	chr1	101822873	101823372	+	0	NA	intron (NR_126402, intron 4 of 4)	intron (NR_126402, intron 4 of 4)	33729	NR_126402	104355286	Hs.568671	NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
1.54902-5	chr5	43603007	43603506	+	0	NA	promoter-TSS (NR_073113)	promoter-TSS (NR_073113)	27	NM_182977	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
0.419142-43	chr6	96602547	96603046	+	0	NA	intron (NM_006581, intron 2 of 2)	intron (NM_006581, intron 2 of 2)	138951	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
0.840728-4	chr2	64681555	64682054	+	0	NA	intron (NM_014181, intron 1 of 4)	CpG	477	NM_014181	29094	Hs.372208	NM_014181	ENSG00000119862	LGALSL	GRP|HSPC159	galectin like	protein-coding
1.10698-19	chr2	232063077	232063576	+	0	NA	promoter-TSS (NM_001291656)	promoter-TSS (NM_001291656)	66	NM_001291656	80210	Hs.162411	NM_025139	ENSG00000135931	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
12.7737-3	chr5	14741229	14741728	+	0	NA	intron (NM_054027, intron 8 of 11)	L2b|LINE|L2	28675	NR_046285	100130744	Hs.660550	NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
2.82329-15	chr5	118914573	118915072	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-50432	NM_001163991	340069	Hs.713304	NM_182761	ENSG00000164334	FAM170A	ZNFD	family with sequence similarity 170 member A	protein-coding
1.00179	chr6	117396297	117396796	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-190175	NM_182645	245806	Hs.99324	NM_153453	ENSG00000170162	VGLL2	VGL2|VITO1	vestigial like family member 2	protein-coding
37.5449-2	chr6	51883871	51884370	+	0	NA	intron (NM_170724, intron 33 of 60)	MIRc|SINE|MIR	68303	NM_170724	5314	Hs.662050	NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
5.83359-28	chr21_gl000210_random	11397	11896	+	0	NA	NA	MIR|SINE|MIR	NA	NA								
0.371573-2	chr13	27998270	27998769	+	0	NA	promoter-TSS (NM_002097)	promoter-TSS (NM_002097)	-162	NM_002097	2971	Hs.445977	NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
2.18963-14	chr2	111878567	111879066	+	0	NA	intron (NM_207003, intron 1 of 4)	CpG-15379	325	NM_001204109	10018	Hs.469658	NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
3.03644-5	chr20	189532	190031	+	0	NA	Intergenic	Intergenic	-18118	NM_080831	140881	Hs.112087	NM_080831	ENSG00000125903	DEFB129	C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29	defensin beta 129	protein-coding
2.8735	chr3	136538615	136539114	+	0	NA	intron (NM_025246, intron 1 of 1)	CpG	1003	NM_001097600	80723	Hs.477692	NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
12.8735	chr5	31107045	31107544	+	0	NA	Intergenic	Intergenic	-86468	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
4.68521-13	chr10	75531869	75532368	+	0	NA	promoter-TSS (NM_001284194)	promoter-TSS (NM_001284194)	69	NM_001284194	170384	Hs.588854	NM_173540	ENSG00000196968	FUT11	-	fucosyltransferase 11	protein-coding
0.254883-35	chrX	130964468	130964967	+	0	NA	promoter-TSS (NR_026975)	promoter-TSS (NR_026975)	-46	NR_026975	286467	Hs.720385	NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
0.0174066-20	chr3	33481833	33482332	+	0	NA	promoter-TSS (NM_001128160)	promoter-TSS (NM_001128160)	-185	NM_001128161	7342	Hs.729120	NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1 (LBP-1a)	protein-coding
3.39135-16	chr2	85732004	85732503	+	0	NA	Intergenic	Intergenic	33756	NR_038942	100630918	Hs.66049	NR_038942		PARTICL	PARTICLE	promoter of MAT2A antisense radiation-induced circulating long non-coding RNA	ncRNA
0.347983-15	chr9	139940384	139940883	+	0	NA	promoter-TSS (NM_015392)	promoter-TSS (NM_015392)	43	NM_015392	56654	Hs.719906	NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
3.81952-8	chr5	13379266	13379765	+	0	NA	Intergenic	MER21A|LTR|ERVL	565074	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding
7.54487-6	chr8	125736392	125736891	+	0	NA	intron (NM_014751, intron 1 of 13)	intron (NM_014751, intron 1 of 13)	4107	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
3.49692-3	chr7	117270500	117270999	+	0	NA	intron (NM_000492, intron 22 of 26)	MER61C|LTR|ERV1	150732	NM_000492	1080	Hs.489786	NM_000492	ENSG00000001626	CFTR	ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1	cystic fibrosis transmembrane conductance regulator	protein-coding
7.35182-14	chr15	57737241	57737740	+	0	NA	intron (NM_001252335, intron 5 of 19)	intron (NM_001252335, intron 5 of 19)	68787	NM_032866	84952	Hs.148989	NM_032866	ENSG00000128849	CGNL1	JACOP|PCING	cingulin like 1	protein-coding
0.385789-3	chr6	144328185	144328684	+	0	NA	non-coding (NR_002768, exon 1 of 1)	non-coding (NR_002768, exon 1 of 1)	1119	NM_001317162	5325	Hs.743225	NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
17.122-6	chr8	103934106	103934605	+	0	NA	intron (NR_126339, intron 2 of 2)	intron (NR_126339, intron 2 of 2)	57856	NR_126338	100506753	Hs.602901	NR_126338		AZIN1-AS1	-	AZIN1 antisense RNA 1	ncRNA
2.30623-15	chr18	34123949	34124448	+	0	NA	intron (NM_025135, intron 5 of 24)	intron (NM_025135, intron 5 of 24)	119183	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
5.73489-2	chr9	98030893	98031392	+	0	NA	intron (NM_000136, intron 1 of 14)	intron (NM_000136, intron 1 of 14)	48394	NM_001243743	2176	Hs.494529	NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	Fanconi anemia complementation group C	protein-coding
3.27902-10	chr17	75954371	75954870	+	0	NA	Intergenic	CpG	-45698	NM_018996	57690	Hs.406810	NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing 6C	protein-coding
3.38187-2	chr14	24846710	24847209	+	0	NA	3' UTR (NM_001136022, exon 10 of 10)	3' UTR (NM_001136022, exon 10 of 10)	8600	NM_001288802	4776	Hs.77810	NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T-cells 4	protein-coding
3.83	chr1	68215706	68216205	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	65095	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
3.37242-4	chr3	152096349	152096848	+	0	NA	intron (NM_001314057, intron 2 of 11)	AluJb|SINE|Alu	-37819	NR_132656	645843	Hs.632562	NM_001123228		TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
12.0135-5	chr11	17035657	17036156	+	0	NA	promoter-TSS (NM_175058)	promoter-TSS (NM_175058)	57	NM_175058	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
10.9098-5	chr1	32799915	32800414	+	0	NA	TTS (NM_004964)	TTS (NM_004964)	1676	NM_023009	65108	Hs.75061	NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
0.680339-16	chrX	135579217	135579716	+	0	NA	promoter-TSS (NM_014500)	promoter-TSS (NM_014500)	-205	NM_014500	27336	Hs.204475	NM_014500	ENSG00000102241	HTATSF1	TAT-SF1|TATSF1|dJ196E23.2	HIV-1 Tat specific factor 1	protein-coding
4.21361-6	chr5	38542028	38542527	+	0	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	14471	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
1.12946	chr12	58149442	58149941	+	0	NA	intron (NM_138396, intron 1 of 3)	CpG	810	NM_138396	92979	Hs.632709	NM_138396	ENSG00000139266	MARCH9	MARCH-IX|RNF179	membrane associated ring-CH-type finger 9	protein-coding
0.550241-35	chr19	19313969	19314468	+	0	NA	promoter-TSS (NM_176880)	promoter-TSS (NM_176880)	20	NM_176880	126382	Hs.708153	NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
6.47817-10	chr5	72683621	72684120	+	0	NA	Intergenic	Intergenic	60482	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
14.6597	chr1	65573981	65574480	+	0	NA	Intergenic	L2|LINE|L2	-39002	NM_203464	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
1.26098-21	chr3	115316914	115317413	+	0	NA	Intergenic	MER21C|LTR|ERVL	-24988	NM_002045	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
4.82804-4	chr5	105430197	105430696	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	916269	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
3.63512-6	chr12	70246342	70246841	+	0	NA	intron (NM_182530, intron 1 of 24)	SVA_B|Other|Other	27488	NM_182530	196446	Hs.253773	NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor-like	protein-coding
1.12383-2	chr8	108393435	108393934	+	0	NA	intron (NM_001199859, intron 1 of 8)	intron (NM_001199859, intron 1 of 8)	-44941	NM_001314051	284	Hs.369675	NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
3.24222-7	chr4	87813251	87813750	+	0	NA	promoter-TSS (NM_144645)	promoter-TSS (NM_144645)	75	NM_144645	132989	Hs.339646	NM_144645	ENSG00000163633	C4orf36	-	chromosome 4 open reading frame 36	protein-coding
0.736576-18	chr3	40350879	40351378	+	0	NA	promoter-TSS (NR_033965)	promoter-TSS (NR_033965)	-45	NM_005875	10289	Hs.315230	NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
1.17475-27	chr17	18466659	18467158	+	0	NA	intron (NR_036647, intron 12 of 16)	MER1B|DNA|hAT-Charlie	-36748	NR_026809	80039	Hs.674403	NM_024974	ENSG00000213077	FAM106A	-	family with sequence similarity 106 member A	ncRNA
0.227338-22	chr1	243585049	243585548	+	0	NA	intron (NM_006642, intron 15 of 17)	intron (NM_006642, intron 15 of 17)	75820	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
17.4473-5	chr3	97667859	97668358	+	0	NA	intron (NM_001042533, intron 7 of 9)	MSTB1|LTR|ERVL-MaLR	23187	NM_001042533	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
21.2668-2	chr20	45754418	45754917	+	0	NA	intron (NM_005244, intron 9 of 15)	intron (NM_005244, intron 9 of 15)	-40942	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
1.02923-20	chr8	63997830	63998329	+	0	NA	intron (NM_000370, intron 1 of 4)	intron (NM_000370, intron 1 of 4)	533	NM_000370	7274	Hs.69049	NM_000370	ENSG00000137561	TTPA	ATTP|AVED|TTP1|alphaTTP	alpha tocopherol transfer protein	protein-coding
5.95166-9	chr1	228401080	228401579	+	0	NA	promoter-TSS (NR_073155)	promoter-TSS (NR_073155)	27	NR_073155	574407	Hs.650039	NM_001025495	ENSG00000162913	C1orf145	-	chromosome 1 open reading frame 145	ncRNA
7.39929-9	chr14	31094883	31095382	+	0	NA	intron (NM_001257376, intron 1 of 22)	intron (NM_001257376, intron 1 of 22)	3607	NM_001257376	23256	Hs.369168	NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
3.02771-9	chr4	185726571	185727070	+	0	NA	5' UTR (NM_001286710, exon 1 of 21)	5' UTR (NM_001286710, exon 1 of 21)	122	NM_001286710	2180	Hs.406678	NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long-chain family member 1	protein-coding
3.61511-3	chr5	25766590	25767089	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	575777	NR_136209	105374693	Hs.628714	NR_136209		LOC105374693	-	uncharacterized LOC105374693	ncRNA
0.409586-44	chr12	117905712	117906211	+	0	NA	intron (NM_173598, intron 19 of 19)	intron (NM_173598, intron 19 of 19)	-106354	NM_000620	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
0.783135	chr2	111435993	111436492	+	0	NA	promoter-TSS (NM_004336)	promoter-TSS (NM_004336)	-558	NM_001278616	699	Hs.469649	NM_004336	ENSG00000169679	BUB1	BUB1A|BUB1L|hBUB1	BUB1 mitotic checkpoint serine/threonine kinase	protein-coding
1.4691-13	chr4	159644363	159644862	+	0	NA	promoter-TSS (NM_005038)	promoter-TSS (NM_005038)	-60	NM_005038	5481	Hs.183958	NM_005038	ENSG00000171497	PPID	CYP-40|CYPD	peptidylprolyl isomerase D	protein-coding
0.15923-36	chr2	39664979	39665478	+	0	NA	promoter-TSS (NM_001270425)	promoter-TSS (NM_001270425)	671	NR_037875	728730	Hs.655344	NR_037875	ENSG00000231312	LOC728730	-	uncharacterized LOC728730	ncRNA
2.82329-21	chr14	105555177	105555676	+	0	NA	Intergenic	Intergenic	-5058	NR_110546	102723354	Hs.569410	NR_110546		LOC102723354	-	uncharacterized LOC102723354	ncRNA
2.86509-2	chr2	86642026	86642525	+	0	NA	Intergenic	Intergenic	-25996	NM_018433	55818	Hs.557425	NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
2.47952-3	chr11	95438106	95438605	+	0	NA	Intergenic	Intergenic	84599	NM_144664	143684	Hs.288304	NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
4.17937-9	chr2	198569856	198570355	+	0	NA	promoter-TSS (NM_138395)	promoter-TSS (NM_138395)	77	NM_138395	92935	Hs.744330	NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
0.0921731-38	chr19	47759548	47760047	+	0	NA	promoter-TSS (NM_015603)	promoter-TSS (NM_015603)	66	NM_015603	26093	Hs.227782	NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
13.2057-3	chr2	228636825	228637324	+	0	NA	Intergenic	Intergenic	-41484	NM_004591	6364	Hs.75498	NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
17.0774-5	chr11	115857977	115858476	+	0	NA	Intergenic	Intergenic	-227308	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
1.80456-5	chr19	796840	797339	+	0	NA	promoter-TSS (NM_031990)	promoter-TSS (NM_031990)	-303	NM_031991	5725	Hs.172550	NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
1.41463-6	chr16	28985733	28986232	+	0	NA	promoter-TSS (NM_001142448)	promoter-TSS (NM_001142448)	-114	NM_001142450	83985	Hs.617449	NM_032038	ENSG00000169682	SPNS1	HSpin1|LAT|PP2030|SPIN1|SPINL|nrs	sphingolipid transporter 1 (putative)	protein-coding
2.98432-12	chr9	96004246	96004745	+	0	NA	intron (NM_001282394, intron 6 of 29)	intron (NM_001282394, intron 6 of 29)	57283	NM_006648	65268	Hs.654856	NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
3.8405-19	chr9	15572200	15572699	+	0	NA	intron (NM_173550, intron 3 of 25)	MIRb|SINE|MIR	19444	NM_001348002	203238	Hs.17267	NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
4.67246-7	chr1	221913786	221914285	+	0	NA	intron (NM_007207, intron 1 of 3)	intron (NM_007207, intron 1 of 3)	1483	NR_111940	11221	Hs.497822	NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
3.79864-6	chr5	154134364	154134863	+	0	NA	intron (NM_015315, intron 1 of 18)	CpG	42151	NM_015315	23367	Hs.292078	NM_015315	ENSG00000155506	LARP1	LARP	La ribonucleoprotein domain family member 1	protein-coding
13.2239	chr12	2221488	2221987	+	0	NA	intron (NM_001129830, intron 1 of 47)	intron (NM_001129830, intron 1 of 47)	59286	NM_001167624	775	Hs.118262	NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS	calcium voltage-gated channel subunit alpha1 C	protein-coding
2.43364-25	chr6	39082155	39082654	+	0	NA	intron (NM_001304793, intron 1 of 2)	intron (NM_001304793, intron 1 of 2)	558	NM_001304793	55776	Hs.58382	NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
0.0217692-21	chr17	65826528	65827027	+	0	NA	intron (NM_182641, intron 1 of 27)	(GGGA)n|Simple_repeat|Simple_repeat	4997	NM_004459	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
7.21246-4	chr4	22240395	22240894	+	0	NA	Intergenic	Intergenic	100645	NR_037877	100505912	Hs.270471	NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
15.7349	chr2	201139312	201139811	+	0	NA	Intergenic	Intergenic	-31043	NM_001282735	26010	Hs.120323	NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
4.65974-14	chr1	118349328	118349827	+	0	NA	Intergenic	Intergenic	122725	NM_001135589	54834	Hs.310809	NM_017686	ENSG00000196505	GDAP2	MACROD3	ganglioside induced differentiation associated protein 2	protein-coding
0.385789-4	chr19	58427803	58428302	+	0	NA	promoter-TSS (NM_152475)	promoter-TSS (NM_152475)	-68	NM_001297734	147687	Hs.567710	NM_152475	ENSG00000173480	ZNF417	-	zinc finger protein 417	protein-coding
1.16339-3	chr11	85339970	85340469	+	0	NA	5' UTR (NM_001193537, exon 2 of 6)	5' UTR (NM_001193537, exon 2 of 6)	602	NM_001256547	55863	Hs.525063	NM_018480	ENSG00000171204	TMEM126B	HT007	transmembrane protein 126B	protein-coding
14.2481-2	chr18	4380611	4381110	+	0	NA	intron (NM_004746, intron 1 of 12)	intron (NM_004746, intron 1 of 12)	74406	NM_004746	9229	Hs.594640	NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
2.82329-16	chr1	175177034	175177533	+	0	NA	Intergenic	Intergenic	-15054	NM_001319230	9674	Hs.518138	NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
10.8725-3	chr4	44532639	44533138	+	0	NA	Intergenic	L1PA16|LINE|L1	-82064	NM_198353	386617	Hs.479644	NM_198353	ENSG00000183783	KCTD8	-	potassium channel tetramerization domain containing 8	protein-coding
1.75874-7	chr19	30205965	30206464	+	0	NA	promoter-TSS (NM_001031726)	promoter-TSS (NM_001031726)	238	NM_001256046	83636	Hs.529094	NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
3.38187-7	chr9	34994324	34994823	+	0	NA	intron (NM_001135005, intron 2 of 3)	intron (NM_001135005, intron 2 of 3)	4306	NM_001135005	25822	Hs.237506	NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
0.132283-4	chr7	116570433	116570932	+	0	NA	Intergenic	Intergenic	-22699	NM_021908	7982	Hs.368131	NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
1.59267-7	chr4	42657884	42658383	+	0	NA	intron (NM_006095, intron 1 of 36)	intron (NM_006095, intron 1 of 36)	989	NM_006095	10396	Hs.435052	NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
4.29457-2	chr17	49030958	49031457	+	0	NA	Intergenic	Intergenic	-85868	NM_001243877	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
4.7237-18	chr11	44026579	44027078	+	0	NA	Intergenic	Intergenic	-42703	NM_001031854	390110	Hs.558851	NM_001031854	ENSG00000205126	ACCSL	-	1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like	protein-coding
6.75718-11	chr8	8747438	8747937	+	0	NA	exon (NM_004225, exon 1 of 3)	exon (NM_004225, exon 1 of 3)	3444	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
1.20331-15	chr4_gl000193_random	104290	104789	+	0	NA	Intergenic	SST1|Satellite|centr	-16164	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
6.57577-6	chr7	1064090	1064589	+	0	NA	non-coding (NR_134538, exon 2 of 2)	non-coding (NR_134538, exon 2 of 2)	-1677	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
4.03403-6	chr10	12084232	12084731	+	0	NA	intron (NM_080599, intron 1 of 21)	CpG	359	NM_015542	26019	Hs.370689	NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding
3.41035-9	chr8	31769597	31770096	+	0	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	-113406	NR_104158	100856811	Hs.97362	NR_104156		NRG1-IT1	-	NRG1 intronic transcript 1	ncRNA
1.67491-5	chr2	74302638	74303137	+	0	NA	intron (NM_001287491, intron 4 of 10)	L5|LINE|RTE	72152	NM_212552	388962	Hs.61472	NM_212552	ENSG00000163170	BOLA3	MMDS2	bolA family member 3	protein-coding
7.87812-4	chr17	55967381	55967880	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	13120	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
4.80172-9	chr5	105524857	105525356	+	0	NA	Intergenic	Intergenic	821609	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
1.00727-8	chr5	53607079	53607578	+	0	NA	promoter-TSS (NM_019087)	promoter-TSS (NM_019087)	-925	NM_019087	54622	Hs.659125	NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
4.21361-2	chr4	176691667	176692166	+	0	NA	intron (NM_201592, intron 1 of 6)	intron (NM_201592, intron 1 of 6)	16911	NM_001261448	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
2.54925-17	chr17	49195674	49196173	+	0	NA	intron (NM_001130527, intron 1 of 29)	intron (NM_001130527, intron 1 of 29)	2303	NM_001130527	9043	Hs.463439	NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
30.7263-3	chr8	141223715	141224214	+	0	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	-113330	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
1.89096-14	chr4	79696872	79697371	+	0	NA	promoter-TSS (NM_017593)	promoter-TSS (NM_017593)	-411	NM_198892	55589	Hs.146551	NM_017593	ENSG00000138756	BMP2K	BIKE|HRIHFB2017	BMP2 inducible kinase	protein-coding
1.56145-6	chr2	18741721	18742220	+	0	NA	promoter-TSS (NM_020905)	promoter-TSS (NM_020905)	-11	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
8.8941-13	chr4	157852331	157852830	+	0	NA	intron (NR_036641, intron 1 of 6)	intron (NR_036641, intron 1 of 6)	39966	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
15.4516-2	chr8	102217761	102218260	+	0	NA	promoter-TSS (NM_001042510)	promoter-TSS (NM_001042510)	-50	NM_001042510	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
2.80669-10	chr1	201864960	201865459	+	0	NA	TTS (NM_012134)	TTS (NM_012134)	7404	NM_198149	149345	Hs.632471	NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
0.0436481-9	chr1	95339421	95339920	+	0	NA	intron (NM_001301079, intron 11 of 13)	intron (NM_001301079, intron 11 of 13)	51694	NM_001286056	1266	Hs.483454	NM_001839	ENSG00000117519	CNN3	-	calponin 3	protein-coding
14.828-3	chr12	107637075	107637574	+	0	NA	Intergenic	Intergenic	-74873	NM_001347943	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding
1.23205-13	chr16	57844068	57844567	+	0	NA	promoter-TSS (NM_001278081)	promoter-TSS (NM_001278081)	-232	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
52.2988	chr1	241540169	241540668	+	0	NA	Intergenic	Intergenic	-19888	NM_002924	6000	Hs.655739	NM_002924	ENSG00000182901	RGS7	-	regulator of G-protein signaling 7	protein-coding
16.9897	chr18	67067376	67067875	+	0	NA	promoter-TSS (NM_152721)	promoter-TSS (NM_152721)	-659	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
13.4775-3	chr18	48345766	48346265	+	0	NA	exon (NM_001127176, exon 2 of 7)	exon (NM_001127176, exon 2 of 7)	419	NM_001127176	83876	Hs.30495	NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding
10.5849	chr2	10466750	10467249	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	-3290	NM_001258357	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
1.43876-3	chr2	60779311	60779810	+	0	NA	intron (NM_138559, intron 1 of 4)	CpG	1073	NM_018014	53335	Hs.370549	NM_018014	ENSG00000119866	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A	protein-coding
9.24453-9	chr2	208202426	208202925	+	0	NA	Intergenic	Intergenic	-68527	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
0.419142-27	chr16	66161364	66161863	+	0	NA	Intergenic	Intergenic	-238897	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
0.710923-7	chr7	117793518	117794017	+	0	NA	Intergenic	Intergenic	-30319	NM_016200	51691	Hs.655046	NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
5.12862-6	chr1	32801361	32801860	+	0	NA	exon (NM_023009, exon 1 of 2)	exon (NM_023009, exon 1 of 2)	230	NM_023009	65108	Hs.75061	NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
0.0833099-27	chr8	3442355	3442854	+	0	NA	intron (NM_033225, intron 9 of 69)	intron (NM_033225, intron 9 of 69)	-856613	NR_125425	101927815	Hs.571467	NR_125423	ENSG00000254319	LOC101927815	-	uncharacterized LOC101927815	ncRNA
15.544-2	chr9	71377435	71377934	+	0	NA	intron (NM_003558, intron 2 of 15)	intron (NM_003558, intron 2 of 15)	-17238	NM_138333	116224	Hs.655572	NM_138333	ENSG00000187866	FAM122A	C9orf42	family with sequence similarity 122A	protein-coding
20.6198	chr1	209721405	209721904	+	0	NA	Intergenic	Intergenic	-35391	NM_020439	57172	Hs.199068	NM_020439	ENSG00000008118	CAMK1G	CLICK3|CLICKIII|VWS1|dJ272L16.1	calcium/calmodulin dependent protein kinase IG	protein-coding
1.56767-9	chr17	66201708	66202207	+	0	NA	promoter-TSS (NM_001346471)	promoter-TSS (NM_001346471)	-313	NM_001346481	51321	Hs.293560	NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
17.0774-6	chr1	241626566	241627065	+	0	NA	Intergenic	Intergenic	56270	NM_000143	2271	Hs.592490	NM_000143	ENSG00000091483	FH	FMRD|HLRCC|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
0.190881-30	chr3	13058555	13059054	+	0	NA	intron (NM_001134382, intron 1 of 14)	L2a|LINE|L2	-30268	NM_001330619	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
1.39063-5	chr15	31653843	31654342	+	0	NA	intron (NM_001302461, intron 1 of 1)	intron (NM_001302461, intron 1 of 1)	35034	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
0.457575-2	chr9	119843829	119844328	+	0	NA	intron (NM_014010, intron 4 of 21)	MLT1E1A|LTR|ERVL-MaLR	99402	NR_003708	100124538	Hs.693445	NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
13.4104-5	chr8	135844530	135845029	+	0	NA	Intergenic	CpG	-5533	NR_126028	552853	Hs.575612	NR_126028	ENSG00000253433	NCRNA00250	C8orf24	non-protein coding RNA 250	ncRNA
9.54677-3	chr5	12835138	12835637	+	0	NA	Intergenic	L1PA6|LINE|L1	167416	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
14.034-3	chr15	88761864	88762363	+	0	NA	intron (NM_001007156, intron 3 of 15)	intron (NM_001007156, intron 3 of 15)	-12908	NM_001320135	4916	Hs.185701	NM_002530	ENSG00000140538	NTRK3	GP145-TrkC|TRKC|gp145(trkC)	neurotrophic receptor tyrosine kinase 3	protein-coding
1.20331-7	chr21	46245361	46245860	+	0	NA	Intergenic	SVA_D|Other|Other	-7566	NM_006936	6612	Hs.474005	NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin-like modifier 3	protein-coding
18.5699-4	chr18	30355496	30355995	+	0	NA	Intergenic	Intergenic	-2771	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
1.08463-8	chr13	106249827	106250326	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-92046	NR_040247	282706	Hs.558713	NR_040247	ENSG00000232307	DAOA-AS1	DAOA-AS|DAOAAS|G30	DAOA antisense RNA 1	ncRNA
0.15923-6	chr10	118575572	118576071	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	-33202	NM_001242699	387712	Hs.693248	NM_001242699	ENSG00000188316	ENO4	C10orf134	enolase family member 4	protein-coding
8.01343-13	chrX	154028083	154028582	+	0	NA	intron (NM_001166462, intron 1 of 12)	intron (NM_001166462, intron 1 of 12)	5470	NM_001166462	4354	Hs.496984	NM_002436	ENSG00000130830	MPP1	AAG12|DXS552E|EMP55|MRG1|PEMP	membrane palmitoylated protein 1	protein-coding
2.18963-30	chr17	18935614	18936113	+	0	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	14473	NM_006613	10750	Hs.567416	NM_006613	ENSG00000154016	GRAP	-	GRB2-related adaptor protein	protein-coding
11.1351-4	chr6	140101516	140102015	+	0	NA	intron (NR_038399, intron 1 of 2)	intron (NR_038399, intron 1 of 2)	9555	NR_038399	100132735	Hs.62646	NR_038399		LOC100132735	-	uncharacterized LOC100132735	ncRNA
4.05607-3	chr19	2332291	2332790	+	0	NA	intron (NM_001077238, intron 1 of 15)	intron (NM_001077238, intron 1 of 15)	3911	NM_152988	56928	Hs.744026	NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
7.01147-12	chr13	27379767	27380266	+	0	NA	Intergenic	SVA_D|Other|Other	-45094	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
1.34896-13	chr2	127862889	127863388	+	0	NA	intron (NM_139351, intron 1 of 12)	intron (NM_139351, intron 1 of 12)	1765	NM_139349	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
0.390538	chr9	131709715	131710214	+	0	NA	promoter-TSS (NM_014908)	promoter-TSS (NM_014908)	-8	NM_015354	23511	Hs.308340	NM_015354	ENSG00000095319	NUP188	KIAA0169|hNup188	nucleoporin 188	protein-coding
0.0833099-53	chr12	87028341	87028840	+	0	NA	intron (NM_013244, intron 1 of 6)	MLT1E1A|LTR|ERVL-MaLR	204091	NM_013244	25834	Hs.589093	NM_013244	ENSG00000182050	MGAT4C	GNTIVH|HGNT-IV-H	MGAT4 family member C	protein-coding
3.65523-3	chr18	25349035	25349534	+	0	NA	Intergenic	Intergenic	267265	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
2.04815-8	chr9	130468984	130469483	+	0	NA	promoter-TSS (NM_001012502)	promoter-TSS (NM_001012502)	-38	NM_001012502	286207	Hs.652519	NM_001012502	ENSG00000160401	CFAP157	C9orf117	cilia and flagella associated protein 157	protein-coding
1.15771	chr14	97033523	97034022	+	0	NA	TTS (NM_001293628)	TTS (NM_001293628)	64570	NM_001293628	10914	Hs.253726	NM_032632	ENSG00000090060	PAPOLA	PAP	poly(A) polymerase alpha	protein-coding
0.996329-35	chr16	30626586	30627085	+	0	NA	Intergenic	Intergenic	-4739	NR_073481	115509	Hs.454685	NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
2.29148-15	chr10	103877235	103877976	+	0	NA	intron (NM_001113407, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	2625	NM_001113407	8861	Hs.454418	NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
0.931265-6	chr3	127130094	127130593	+	0	NA	Intergenic	Intergenic	-20830	NR_110147	101927123	Hs.526761	NR_110147	ENSG00000244215	LINC02016	-	long intergenic non-protein coding RNA 2016	ncRNA
4.12289-8	chr4	186378304	186378803	+	0	NA	intron (NM_152775, intron 6 of 6)	LTR40a|LTR|ERVL	-14032	NR_133944	105377590	Hs.563183	NR_133944	ENSG00000249679	LOC105377590	-	uncharacterized LOC105377590	ncRNA
2.04815-22	chr21	24277199	24277698	+	0	NA	Intergenic	Intergenic	-174158	NR_106746	102466967		NR_106746	ENSG00000275469	MIR6130	hsa-mir-6130	microRNA 6130	ncRNA
3.68556-9	chr16	28874557	28875056	+	0	NA	promoter-TSS (NM_001145795)	promoter-TSS (NM_001145795)	-272	NM_001145796	25970	Hs.15744	NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
10.5799-7	chr11	3071835	3072334	+	0	NA	intron (NM_001014437, intron 1 of 22)	intron (NM_001014437, intron 1 of 22)	6597	NM_001014437	833	Hs.274873	NM_001751	ENSG00000110619	CARS	CARS1|CYSRS|MGC:11246	cysteinyl-tRNA synthetase	protein-coding
1.08463-3	chr15	27479573	27480072	+	0	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	-73356	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
1.11259-4	chr16	74777646	74778145	+	0	NA	intron (NM_024306, intron 1 of 6)	intron (NM_024306, intron 1 of 6)	30834	NM_024306	79152	Hs.461329	NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
1.45087-20	chr1	85219058	85219557	+	0	NA	Intergenic	L2a|LINE|L2	-63067	NM_001166294	117178	Hs.22587	NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
7.47147-8	chr2	120232723	120233222	+	0	NA	intron (NM_002980, intron 3 of 12)	intron (NM_002980, intron 3 of 12)	43526	NM_183240	140738	Hs.26216	NM_183240	ENSG00000171227	TMEM37	PR|PR1	transmembrane protein 37	protein-coding
5.25784-10	chr18	3402987	3403486	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-8689	NM_174886	7050	Hs.373550	NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
8.86057	chr9	79009628	79010127	+	0	NA	promoter-TSS (NM_018339)	promoter-TSS (NM_018339)	-433	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
2.96709-13	chr1	231175716	231176215	+	0	NA	promoter-TSS (NM_198552)	promoter-TSS (NM_198552)	30	NM_198552	375061	Hs.38516	NM_198552	ENSG00000182118	FAM89A	C1orf153	family with sequence similarity 89 member A	protein-coding
1.2436-4	chr13	51564903	51565402	+	0	NA	Intergenic	Intergenic	75141	NR_003923	2974	Hs.411573	NM_004129	ENSG00000123201	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo
6.23423-4	chr13	113545762	113546261	+	0	NA	Intergenic	Intergenic	76941	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
1.07349	chr13	109983811	109984310	+	0	NA	Intergenic	Intergenic	-68983	NR_126361	104326054	Hs.569298	NR_126361	ENSG00000229792	LINC00399	TCONS_00021596	long intergenic non-protein coding RNA 399	ncRNA
1.04025-4	chr1	161250644	161251143	+	0	NA	intron (NM_001102566, intron 1 of 2)	SVA_D|Other|Other	22376	NM_001102566	654790	Hs.433150	NM_001102566	ENSG00000248485	PCP4L1	IQM1	Purkinje cell protein 4 like 1	protein-coding
3.85103-21	chr7	124697884	124698383	+	0	NA	intron (NR_125718, intron 4 of 10)	intron (NR_125718, intron 4 of 10)	-126490	NR_110188	101928283	Hs.566650	NR_110188	ENSG00000237764	LOC101928283	-	uncharacterized LOC101928283	ncRNA
0.428718-6	chr8	28513132	28513631	+	0	NA	Intergenic	Intergenic	45600	NR_126027	101929402	Hs.667366	NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
5.96879-5	chr16	58352020	58352519	+	0	NA	Intergenic	Intergenic	-23318	NM_001080492	221191	Hs.411239	NM_001080492	ENSG00000103023	PRSS54	CT67|KLKBL4	protease, serine 54	protein-coding
22.9243	chr20	24114791	24115290	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-65363	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
0.0392635-43	chr3	132756867	132757366	+	0	NA	promoter-TSS (NM_001136469)	promoter-TSS (NM_001136469)	-16	NM_023943	66000	Hs.191616	NM_023943	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
0.783135-18	chr11	64018862	64019361	+	0	NA	5' UTR (NM_001316314, exon 1 of 32)	5' UTR (NM_001316314, exon 1 of 32)	116	NM_001316314	5331	Hs.523761	NM_000932	ENSG00000149782	PLCB3	-	phospholipase C beta 3	protein-coding
13.851	chr9	37692643	37693142	+	0	NA	intron (NM_014907, intron 2 of 15)	intron (NM_014907, intron 2 of 15)	41840	NM_014907	22844	Hs.163990	NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding
1.33122-6	chr17	73453249	73453748	+	0	NA	intron (NM_014738, intron 1 of 31)	intron (NM_014738, intron 1 of 31)	953	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	TMEM94	KIAA0195	transmembrane protein 94	protein-coding
1.67491-3	chr1	110282281	110283195	+	0	NA	intron (NM_000849, intron 2 of 8)	CpG-1409	922	NM_000849	2947	Hs.2006	NM_000849	ENSG00000134202	GSTM3	GST5|GSTB|GSTM3-3|GTM3	glutathione S-transferase mu 3	protein-coding
3.40084-27	chr14	105864818	105865317	+	0	NA	TTS (NM_001243127)	TTS (NM_001243127)	147	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
7.4958-8	chr2	148778155	148778654	+	0	NA	promoter-TSS (NM_018328)	promoter-TSS (NM_018328)	59	NM_181741	5000	Hs.558364	NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
15.9007	chrUn_gl000214	123131	123630	+	0	NA	NA	Intergenic	NA	NA								
3.41989-12	chr14	104145630	104146129	+	0	NA	exon (NM_005552, exon 13 of 15)	exon (NM_005552, exon 13 of 15)	35944	NM_001100119	7517	Hs.592325	NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
16.4782	chr13	89561202	89561701	+	0	NA	Intergenic	Intergenic	282344	NR_047490	100861553	Hs.560132	NR_047490		LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
0.550241	chr2	15189197	15189696	+	0	NA	Intergenic	Intergenic	414231	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding
1.2436-16	chr21	32930233	32930732	+	0	NA	intron (NM_003253, intron 1 of 28)	CpG	808	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
1.36677-20	chr15	50295755	50296254	+	0	NA	intron (NR_073597, intron 7 of 26)	intron (NR_073597, intron 7 of 26)	109509	NR_073598	79895	Hs.511311	NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
1.50581-23	chr19	42271967	42272466	+	0	NA	intron (NM_002483, intron 5 of 5)	SVA_D|Other|Other	12788	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen related cell adhesion molecule 6	protein-coding
1.50581-22	chr17	5185259	5185758	+	0	NA	promoter-TSS (NM_001291582)	promoter-TSS (NM_001291582)	-50	NM_001291581	9135	Hs.584784	NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
8.72895-7	chr11	112176860	112177359	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	35637	NR_126004	283140	Hs.651827	NR_126004	ENSG00000250303	LOC283140	-	uncharacterized LOC283140	ncRNA
0.496351-58	chr19	29799700	29800199	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-95813	NM_006003	7386	Hs.743307	NM_006003	ENSG00000169021	UQCRFS1	RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
18.3268-8	chr16	4968726	4969225	+	0	NA	intron (NM_002705, intron 1 of 21)	intron (NM_002705, intron 1 of 21)	18161	NM_002705	5493	Hs.192233	NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
17.4473	chr8	75896605	75897104	+	0	NA	5' UTR (NM_031461, exon 1 of 15)	5' UTR (NM_031461, exon 1 of 15)	146	NM_031461	83690	Hs.436542	NM_031461	ENSG00000121005	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine rich secretory protein LCCL domain containing 1	protein-coding
17.5696	chr7	81720442	81720941	+	0	NA	intron (NM_000722, intron 6 of 38)	intron (NM_000722, intron 6 of 38)	82198	NR_110076	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA
2.96709-14	chr3	126006197	126006696	+	0	NA	Intergenic	Intergenic	69790	NM_014079	28999	Hs.272215	NM_014079	ENSG00000163884	KLF15	KKLF	Kruppel like factor 15	protein-coding
1.49354-3	chr5	1389507	1390006	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-9568	NR_125810	100506791	Hs.146092	NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
9.87163-18	chr3	32362443	32362942	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	-70471	NM_138410	112616	Hs.440494	NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
2.42604-2	chr8	37185794	37186293	+	0	NA	intron (NR_031672, intron 2 of 2).2	intron (NR_031672, intron 2 of 2).2	165388	NR_121620	100507420	Hs.105962	NR_121620		LINC01605	-	long intergenic non-protein coding RNA 1605	ncRNA
2.73273-11	chr11	8615599	8616098	+	0	NA	promoter-TSS (NM_001289061)	promoter-TSS (NM_001289061)	-12	NM_001289059	65975	Hs.501833	NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
0.48177-26	chr20	34542273	34542772	+	0	NA	promoter-TSS (NM_033630)	promoter-TSS (NM_033630)	26	NM_033630	51282	Hs.584909	NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
1.36677-10	chr1	205304710	205305209	+	0	NA	TTS (NM_018203)	TTS (NM_018203)	-14040	NM_030952	81788	Hs.497512	NM_030952	ENSG00000163545	NUAK2	SNARK	NUAK family kinase 2	protein-coding
0.846002-4	chr1	109358925	109359424	+	0	NA	intron (NR_049760, intron 13 of 13)	intron (NR_049760, intron 13 of 13)	40552	NM_152763	254268	Hs.729441	NM_152763	ENSG00000162641	AKNAD1	C1orf62	AKNA domain containing 1	protein-coding
7.61954	chr8	18953143	18953642	+	0	NA	Intergenic	Intergenic	-82196	NM_015310	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
12.5649	chr6	30495690	30496189	+	0	NA	Intergenic	Intergenic	-28547	NM_001077497	80742	Hs.118354	NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
1.37869-43	chr4	115609219	115609718	+	0	NA	Intergenic	L2b|LINE|L2	31553	NR_030303	693162		NR_030303	ENSG00000207931	MIR577	MIRN577|hsa-mir-577|mir-577	microRNA 577	ncRNA
5.81699-5	chr10	99334370	99334869	+	0	NA	intron (NM_001346797, intron 1 of 7)	intron (NM_001346797, intron 1 of 7)	2421	NM_001129981	26287	Hs.73708	NM_020349	ENSG00000165887	ANKRD2	ARPP	ankyrin repeat domain 2	protein-coding
0.0305075-67	chr2	107503695	107504194	+	0	NA	promoter-TSS (NM_032528)	promoter-TSS (NM_032528)	-381	NM_001142352	84620	Hs.98265	NM_032528	ENSG00000144057	ST6GAL2	SIAT2|ST6GalII	ST6 beta-galactoside alpha-2,6-sialyltransferase 2	protein-coding
1.86419-5	chr9	140506086	140506585	+	0	NA	intron (NM_152285, intron 1 of 7)	intron (NM_152285, intron 1 of 7)	6243	NM_152285	92714	Hs.12999	NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
6.55608-15	chr6	122720384	122720883	+	0	NA	promoter-TSS (NM_001243094)	promoter-TSS (NM_001243094)	-63	NM_004506	3298	Hs.158195	NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
1.4752-4	chr5	139422980	139423479	+	0	NA	promoter-TSS (NM_001184935)	promoter-TSS (NM_001184935)	-345	NM_013983	9542	Hs.408515	NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
3.02771-10	chr7	76751040	76751539	+	0	NA	promoter-TSS (NM_020879)	promoter-TSS (NM_020879)	-645	NM_020879	57639	Hs.113940	NM_020879	ENSG00000135205	CCDC146	-	coiled-coil domain containing 146	protein-coding
18.2681-2	chr8	109611614	109612113	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	156051	NM_001329494	9694	Hs.654351	NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
0.716041-3	chr17	11924255	11924754	+	0	NA	intron (NM_003010, intron 1 of 10)	CpG	369	NM_001281435	6416	Hs.514681	NM_003010	ENSG00000065559	MAP2K4	JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1	mitogen-activated protein kinase kinase 4	protein-coding
0.888424-11	chr11	14379496	14379995	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	286	NM_001177315	22800	Hs.502004	NM_012250	ENSG00000133818	RRAS2	TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
0.675262-8	chr17	8095366	8095865	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-2051	NM_017622	54785	Hs.129563	NM_017622	ENSG00000196544	BORCS6	C17orf59|PRO2472	BLOC-1 related complex subunit 6	protein-coding
2.0621-9	chr14	100952657	100953156	+	0	NA	intron (NM_024515, intron 4 of 6)	intron (NM_024515, intron 4 of 6)	81501	NM_001159531	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
20.1863	chr12	26981101	26981600	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	4781	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
3.85103-10	chr1	147206392	147206891	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	26073	NM_181703	2702	Hs.447968	NM_005266	ENSG00000265107	GJA5	ATFB11|CX40	gap junction protein alpha 5	protein-coding
7.61954-9	chr8	145733949	145734448	+	0	NA	promoter-TSS (NM_138431)	promoter-TSS (NM_138431)	-221	NM_138431	113655	Hs.7678	NM_138431	ENSG00000167700	MFSD3	-	major facilitator superfamily domain containing 3	protein-coding
5.67031-5	chr6	111426618	111427117	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	18086	NM_018593	117247	Hs.591327	NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 member 10	protein-coding
1.91789-2	chr13	33002132	33002631	+	0	NA	promoter-TSS (NM_001286460)	promoter-TSS (NM_001286460)	-66	NM_001286461	90634	Hs.732118	NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
0.76756-33	chr5	176166634	176167133	+	0	NA	Intergenic	Intergenic	-3323	NR_108030	102577424	Hs.349025	NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
31.6052	chr1	234835860	234836359	+	0	NA	Intergenic	Intergenic	-23680	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
0.190881-11	chr3	127309696	127310195	+	0	NA	promoter-TSS (NR_073377)	promoter-TSS (NR_073377)	-343	NM_001136053	131601	Hs.6418	NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	transmembrane protein adipocyte associated 1	protein-coding
4.86782-2	chrX	86201485	86201984	+	0	NA	Intergenic	Intergenic	-570981	NM_057162	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch like family member 4	protein-coding
18.3268-6	chr5	38758453	38758952	+	0	NA	intron (NR_109951, intron 2 of 3)	intron (NR_109951, intron 2 of 3)	-38327	NR_104631	101926904	Hs.634191	NR_104631	ENSG00000249740	LINC01265	-	long intergenic non-protein coding RNA 1265	ncRNA
3.48722-4	chr9	121439597	121440096	+	0	NA	Intergenic	SVA_B|Other|Other	691893	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	BRINP1	DBC1|DBCCR1|FAM5A	BMP/retinoic acid inducible neural specific 1	protein-coding
2.94992-3	chr17	942636	943135	+	0	NA	intron (NM_001322841, intron 16 of 22)	intron (NM_001322841, intron 16 of 22)	-7804	NM_001256847	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
3.6251-4	chr14	82711637	82712136	+	0	NA	Intergenic	Intergenic	-622481	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
0.0261362-44	chr1	19393496	19393995	+	0	NA	Intergenic	Intergenic	-110919	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
0.560111-6	chr20	32890923	32891422	+	0	NA	promoter-TSS (NM_001322086)	promoter-TSS (NM_001322086)	145	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
3.53596-13	chr16	58060655	58061154	+	0	NA	intron (NM_002428, intron 1 of 9)	CpG	1434	NM_002428	4324	Hs.80343	NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
0.0261362-49	chr21	29765557	29766056	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-145834	NR_026553	118421	Hs.438549	NR_026552	ENSG00000226935	LINC00161	C21orf100|NCRNA00161	long intergenic non-protein coding RNA 161	ncRNA
4.17937-8	chr22	38057002	38057801	+	0	NA	intron (NM_020315, intron 1 of 1)	intron (NM_020315, intron 1 of 1)	2664	NM_020315	57026	Hs.632762	NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
0.357404-16	chr1	22542759	22543258	+	0	NA	Intergenic	Intergenic	-49724	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA
20.0174	chr5	106589401	106589900	+	0	NA	Intergenic	Intergenic	-242935	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
1.29596-23	chr15	99602221	99602720	+	0	NA	Intergenic	CpG	-42816	NM_145728	23336	Hs.207106	NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
21.8977-2	chr14	50810093	50810592	+	0	NA	intron (NM_004196, intron 3 of 8)	intron (NM_004196, intron 3 of 8)	31295	NR_033761	27109	Hs.438489	NM_015684	ENSG00000125375	ATP5S	ATPW|FB|HSU79253	ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B)	protein-coding
22.815	chr6	104974365	104974864	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	332807	NM_001321083	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
4.55932-13	chr18	66609962	66610461	+	0	NA	intron (NM_001093729, intron 8 of 9)	LTR5_Hs|LTR|ERVK	144894	NM_024781	79839	Hs.280781	NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
0.070049-7	chr3	186781944	186782443	+	0	NA	intron (NM_003032, intron 4 of 6)	LTR37A|LTR|ERV1	42528	NM_003032	6480	Hs.207459	NM_003032	ENSG00000073849	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
3.0103-6	chr12	7249815	7250314	+	0	NA	intron (NM_016546, intron 5 of 5)	AluSq|SINE|Alu	-5021	NM_001733	715	Hs.524224	NM_001733	ENSG00000159403	C1R	EDSPD1	complement C1r	protein-coding
4.20216-8	chr6	26534999	26535498	+	0	NA	Intergenic	Intergenic	-3324	NM_006353	10473	Hs.236774	NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
0.555173-3	chr14	25900576	25901075	+	0	NA	Intergenic	Intergenic	-381322	NM_001304476	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
1.51195-10	chr2	20646759	20647258	+	0	NA	5' UTR (NM_004040, exon 1 of 1)	5' UTR (NM_004040, exon 1 of 1)	176	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
0.788339-11	chr2	135756495	135756994	+	0	NA	intron (NM_001321177, intron 4 of 9)	intron (NM_001321177, intron 4 of 9)	24475	NM_001321177	80122	Hs.659395	NM_025052	ENSG00000176601	MAP3K19	RCK|YSK4	mitogen-activated protein kinase kinase kinase 19	protein-coding
0.599818-14	chr9	107625466	107625965	+	0	NA	intron (NM_005502, intron 5 of 49)	intron (NM_005502, intron 5 of 49)	64812	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
1.04025-5	chr3	39448161	39448660	+	0	NA	intron (NM_001304288, intron 1 of 6)	CpG	230	NM_001304288	3921	Hs.449909	NM_002295	ENSG00000168028	RPSA	37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40	ribosomal protein SA	protein-coding
1.85752	chr16	57318103	57318602	+	0	NA	exon (NM_015993, exon 1 of 4)	exon (NM_015993, exon 1 of 4)	232	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
8.8941-14	chr3	129826223	129826722	+	0	NA	intron (NR_024252, intron 1 of 4)	intron (NR_024252, intron 1 of 4)	3804	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
1.06793-13	chr22	21058394	21058893	+	0	NA	non-coding (NR_026815, exon 8 of 8)	non-coding (NR_026815, exon 8 of 8)	3241	NR_026815	84222	Hs.546454	NM_032262	ENSG00000226287	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
3.12471-12	chr9	8030141	8030640	+	0	NA	Intergenic	Intergenic	-230584	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
2.16811-10	chr5	14154389	14154888	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	10827	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
1.37272-4	chr15	82333124	82333623	+	0	NA	TTS (NM_032246)	TTS (NM_032246)	5111	NM_032246	84206	Hs.104744	NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
7.9588-13	chr11	112214056	112214555	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	72833	NR_126004	283140	Hs.651827	NR_126004	ENSG00000250303	LOC283140	-	uncharacterized LOC283140	ncRNA
0.501223-3	chr22	33276813	33277312	+	0	NA	intron (NM_133633, intron 3 of 11)	intron (NM_133633, intron 3 of 11)	80260	NM_000362	7078	Hs.644633	NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
0.141246-2	chr2	8134551	8135050	+	0	NA	Intergenic	Intergenic	-17855	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
3.18759-10	chr4	54930608	54931107	+	0	NA	promoter-TSS (NM_012110)	promoter-TSS (NM_012110)	-42	NM_012110	26511	Hs.335393	NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
7.85156-14	chr22	37484049	37484548	+	0	NA	intron (NM_153609, intron 7 of 17)	intron (NM_153609, intron 7 of 17)	15395	NM_153609	164656	Hs.370885	NM_153609	ENSG00000187045	TMPRSS6	IRIDA	transmembrane protease, serine 6	protein-coding
1.03474-7	chr2	45169480	45169979	+	0	NA	promoter-TSS (NR_103786)	promoter-TSS (NR_103786)	692	NM_005413	6496	Hs.567336	NM_005413	ENSG00000138083	SIX3	HPE2	SIX homeobox 3	protein-coding
6.73664-7	chr12	28394908	28395407	+	0	NA	intron (NM_018318, intron 1 of 12)	MER54A|LTR|ERVL	51797	NM_018318	55297	Hs.653125	NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding
0.920515-20	chr7	44808835	44809334	+	0	NA	3' UTR (NM_031449, exon 19 of 19)	3' UTR (NM_031449, exon 19 of 19)	13297	NM_174929	83637	Hs.77978	NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
8.21023-7	chr9	138392786	138393285	+	0	NA	non-coding (NR_051969, exon 2 of 4)	non-coding (NR_051969, exon 2 of 4)	558	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	CGI-91|MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
0.520764-3	chr18	47140095	47140594	+	0	NA	Intergenic	L2b|LINE|L2	51943	NM_006033	9388	Hs.465102	NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
0.535477-8	chr7	140353085	140353584	+	0	NA	Intergenic	Intergenic	-12048	NM_001318053	27147	Hs.6385	NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
14.5593	chr8	104121162	104121661	+	0	NA	Intergenic	Intergenic	-31510	NM_024812	79870	Hs.533446	NM_024812	ENSG00000164929	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding
5.867-11	chr11	65529653	65530152	+	0	NA	Intergenic	SVA_D|Other|Other	18160	NM_138368	91056	Hs.591957	NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 beta 1 subunit	protein-coding
0.195421-11	chr17	36754747	36755246	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	7187	NM_025248	80725	Hs.448872	NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
4.46117-12	chr12	105352238	105352737	+	0	NA	Intergenic	Intergenic	-27611	NM_152318	121053	Hs.295563	NM_152318	ENSG00000151131	C12orf45	-	chromosome 12 open reading frame 45	protein-coding
0.90444-8	chr12	21833221	21833720	+	0	NA	Intergenic	Intergenic	-22681	NM_002300	3945	Hs.446149	NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
0.856568-14	chr3	182971857	182972356	+	0	NA	intron (NM_032047, intron 1 of 1)	CpG	1074	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
6.03801-11	chr6	134063066	134063565	+	0	NA	intron (NR_109982, intron 4 of 8)	intron (NR_109982, intron 4 of 8)	-78970	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
1.74574-11	chr6	165722710	165723209	+	0	NA	intron (NM_144980, intron 1 of 8)	intron (NM_144980, intron 1 of 8)	152	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
2.58061-2	chr16	85120595	85121094	+	0	NA	intron (NM_001286565, intron 12 of 12)	intron (NM_001286565, intron 12 of 12)	24026	NM_001286565	9764	Hs.301658	NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
1.56767-13	chr3	1650983	1651482	+	0	NA	Intergenic	Intergenic	-489318	NM_175607	152330	Hs.298705	NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
2.02732-8	chr1	147727001	147727500	+	0	NA	intron (NM_001037501, intron 18 of 19)	intron (NM_001037501, intron 18 of 19)	-7908	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA
1.02923-18	chr11	45201923	45202422	+	0	NA	intron (NM_001256696, intron 1 of 6)	CpG	33278	NM_001256696	56981	Hs.178715	NM_020229	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
4.44906-4	chr1	143270297	143270796	+	0	NA	Intergenic	Intergenic	-68307	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
1.06238-9	chr14	55272269	55272978	+	0	NA	Intergenic	Intergenic	51117	NM_001161577	23034	Hs.98259	NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
0.376307-7	chr20	10197991	10198490	+	0	NA	intron (NR_040710, intron 1 of 4)	CpG	-1206	NM_001322907	6616	Hs.167317	NM_003081	ENSG00000132639	SNAP25	CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2	synaptosome associated protein 25	protein-coding
14.2597	chr2	127684521	127685020	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	28308	NM_001322244	101929926	Hs.98984	NM_001322244	ENSG00000237524	LOC101929926	-	uncharacterized LOC101929926	protein-coding
26.4975	chr7	116936512	116937011	+	0	NA	intron (NR_024047, intron 4 of 4)	intron (NR_024047, intron 4 of 4)	26582	NM_003391	7472	Hs.567356	NM_003391	ENSG00000105989	WNT2	INT1L1|IRP	Wnt family member 2	protein-coding
0.00869459-15	chr7	130578846	130579345	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-16797	NR_029517	407024		NR_029517	ENSG00000226380	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
1.31944-17	chr9	140429296	140429795	+	0	NA	intron (NM_152286, intron 7 of 33)	MER58B|DNA|hAT-Charlie	15476	NM_152286	375775	Hs.294147	NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
81.463	chr3	180269215	180269714	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-50454	NM_133462	151613	Hs.43213	NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
1.36083-6	chr1	236584189	236584688	+	0	NA	intron (NM_145861, intron 3 of 5)	LTR53|LTR|ERVL	25722	NM_080738	128178	Hs.352224	NM_080738	ENSG00000186197	EDARADD	ECTD11A|ECTD11B|ED3|EDA3	EDAR associated death domain	protein-coding
2.13959-17	chr2	9373577	9374076	+	0	NA	intron (NM_001135191, intron 1 of 26)	MIR|SINE|MIR	26932	NM_001135191	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
1.27261-12	chr19	4400440	4400939	+	0	NA	promoter-TSS (NM_001199943)	promoter-TSS (NM_001199943)	-124	NM_001199943	6455	Hs.97616	NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
6.28932-2	chr2	26474727	26475226	+	0	NA	intron (NM_000183, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	7360	NM_001281512	3032	Hs.515848	NM_000183	ENSG00000138029	HADHB	ECHB|MSTP029|MTPB|TP-BETA	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit	protein-coding
2.78189-8	chr2	234739709	234740208	+	0	NA	intron (NM_001287395, intron 38 of 41)	intron (NM_001287395, intron 38 of 41)	23254	NM_001282963	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
25.2578	chr3	194459128	194459627	+	0	NA	intron (NR_037891, intron 1 of 3)	intron (NR_037891, intron 1 of 3)	30227	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LINC01968	-	long intergenic non-protein coding RNA 1968	ncRNA
2.08309-6	chr8	78814754	78815253	+	0	NA	Intergenic	Intergenic	452070	NR_125830	102724874	Hs.571511	NR_125830		LOC102724874	-	uncharacterized LOC102724874	ncRNA
17.8516-6	chr2	31231528	31232027	+	0	NA	intron (NM_001329097, intron 1 of 12)	intron (NM_001329097, intron 1 of 12)	120729	NM_001253827	79623	Hs.468058	NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
0.990869	chr9	6798180	6798679	+	0	NA	intron (NM_001304340, intron 2 of 19)	SVA_D|Other|Other	40788	NR_130707	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
1.00727-12	chr19	5702568	5703067	+	0	NA	intron (NM_001276479, intron 9 of 18)	SVA_D|Other|Other	12471	NM_015414	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
10.4528-4	chrX	126036270	126036769	+	0	NA	Intergenic	L1PREC2|LINE|L1	82772	NM_001122716	100130613	Hs.130370	NM_001122716	ENSG00000183631	PRR32	CXorf64	proline rich 32	protein-coding
3.81952-3	chr6	36410484	36411273	+	0	NA	promoter-TSS (NM_152990)	promoter-TSS (NM_152990)	-212	NM_152990	222659	Hs.520097	NM_152990	ENSG00000179165	PXT1	STEPP	peroxisomal, testis specific 1	protein-coding
0.540393-45	chr3	5123725	5124224	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-39956	NM_018184	55207	Hs.250009	NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
16.7778-3	chr1	107057795	107058294	+	0	NA	Intergenic	Intergenic	-541223	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
3.46787-6	chr3	128368876	128369375	+	0	NA	intron (NM_002950, intron 1 of 9)	CpG	594	NM_002950	6184	Hs.518244	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
11.2552	chr9	3205549	3206048	+	0	NA	Intergenic	Intergenic	24209	NR_121585	101929247	Hs.547178	NR_121585		LINC01231	-	long intergenic non-protein coding RNA 1231	ncRNA
19.0309-2	chr18	33958100	33958599	+	0	NA	intron (NM_025135, intron 3 of 24)	intron (NM_025135, intron 3 of 24)	80690	NM_025135	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
0.438316	chr11	46134462	46134961	+	0	NA	intron (NM_016621, intron 1 of 17)	intron (NM_016621, intron 1 of 17)	8274	NM_001101802	51317	Hs.502458	NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006	PHD finger protein 21A	protein-coding
11.4327-3	chr17	20182971	20183470	+	0	NA	intron (NM_001033555, intron 10 of 12)	L1MB3|LINE|L1	-41267	NR_023380	348254	Hs.462475	NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
0.404816-17	chr1	86173809	86174308	+	0	NA	promoter-TSS (NM_017953)	promoter-TSS (NM_017953)	58	NM_017953	54680	Hs.5111	NM_017953	ENSG00000117174	ZNHIT6	BCD1|C1orf181|NY-BR-75	zinc finger HIT-type containing 6	protein-coding
10-6	chr2	236415282	236415781	+	0	NA	intron (NR_131900, intron 1 of 1)	intron (NR_131900, intron 1 of 1)	1136	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
3.40084-23	chr17	54990638	54991659	+	0	NA	exon (NM_005082, exon 1 of 9)	exon (NM_005082, exon 1 of 9)	261	NM_005082	7706	Hs.528952	NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
2.19683-13	chr5	172644662	172645161	+	0	NA	Intergenic	Intergenic	17404	NM_004387	1482	Hs.54473	NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
0.190881-12	chr2	165170866	165171365	+	0	NA	Intergenic	Intergenic	253945	NM_001303422	2888	Hs.411881	NM_004490	ENSG00000115290	GRB14	-	growth factor receptor bound protein 14	protein-coding
23.4486	chr11	74092067	74092566	+	0	NA	intron (NM_173582, intron 1 of 13)	MLT1J2|LTR|ERVL-MaLR	17194	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A|PMMLP	phosphoglucomutase 2 like 1	protein-coding
6.49752-5	chr18	74768608	74769107	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-39802	NM_001025090	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
13.7572-2	chr3	130587800	130588299	+	0	NA	intron (NM_001199182, intron 1 of 26)	SVA_E|Other|Other	18680	NM_001199181	27032	Hs.584884	NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
5.00313	chr2	43153585	43154084	+	0	NA	Intergenic	Intergenic	112848	NR_110585	102723854	Hs.570165	NR_110585	ENSG00000231826	LINC01819	-	long intergenic non-protein coding RNA 1819	ncRNA
6.28932-11	chr11	15329203	15329702	+	0	NA	Intergenic	Intergenic	158804	NM_001278314	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
0.685421-19	chr15	23034273	23034772	+	0	NA	promoter-TSS (NM_001008860)	promoter-TSS (NM_001008860)	-95	NM_001008860	81614	Hs.591003	NM_030922	ENSG00000140157	NIPA2	-	non imprinted in Prader-Willi/Angelman syndrome 2	protein-coding
3.79864-2	chr8	125053478	125053977	+	0	NA	promoter-TSS (NR_040044)	promoter-TSS (NR_040044)	-704	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
0.996329-26	chr1	84543124	84543623	+	0	NA	promoter-TSS (NM_207578)	promoter-TSS (NM_207578)	-285	NM_207578	5567	Hs.487325	NM_002731	ENSG00000142875	PRKACB	PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
1.07905-16	chr14	60794273	60794772	+	0	NA	Intergenic	Intergenic	78556	NM_021003	5494	Hs.130036	NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
2.9243-6	chr4	163268912	163269411	+	0	NA	Intergenic	Intergenic	-183975	NM_001128428	56884	Hs.32452	NM_020116	ENSG00000168843	FSTL5	-	follistatin like 5	protein-coding
2.80669-2	chr14	105864318	105864817	+	0	NA	promoter-TSS (NM_001195082)	promoter-TSS (NM_001195082)	-353	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
0.371573	chr8	48920664	48921163	+	0	NA	promoter-TSS (NM_003350)	promoter-TSS (NM_003350)	-82	NM_003350	7336	Hs.491695	NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
1.70696-6	chr11	116218296	116218795	+	0	NA	Intergenic	SVA_C|Other|Other	-291594	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
7.35182-5	chr2	86488439	86488938	+	0	NA	intron (NM_022912, intron 3 of 6)	LTR5_Hs|LTR|ERVK	62132	NM_145644	51318	Hs.433439	NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35	mitochondrial ribosomal protein L35	protein-coding
30.0218	chr5	121920593	121921092	+	0	NA	promoter-TSS (NR_134281)	promoter-TSS (NR_134281)	-547	NR_134281	101927357	Hs.639856	NR_134281		LOC101927357	-	uncharacterized LOC101927357	ncRNA
1.45087-9	chr9	38380181	38380680	+	0	NA	Intergenic	Intergenic	-12231	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
0.496351-17	chr20	442954	443453	+	0	NA	promoter-TSS (NM_144628)	promoter-TSS (NM_144628)	-6	NR_111901	128637	Hs.590876	NM_144628	ENSG00000125875	TBC1D20	C20orf140|WARBM4	TBC1 domain family member 20	protein-coding
14.2481	chr17	41400016	41400515	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-19203	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	ncRNA
5.9176-4	chr13	112126716	112127215	+	0	NA	Intergenic	Intergenic	-121391	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
5.51294-6	chr10	135122638	135123137	+	0	NA	promoter-TSS (NM_001256618)	promoter-TSS (NM_001256618)	-227	NM_001256618	10844	Hs.523370	NM_006659	ENSG00000130640	TUBGCP2	GCP-2|GCP2|Grip103|SPBC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex associated protein 2	protein-coding
19.0658-6	chr2	31692216	31692715	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-54854	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
0.467237-25	chr14	101100359	101100858	+	0	NA	Intergenic	Intergenic	-22997	NR_024096	283601	Hs.379802	NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
3.28827-4	chr12	4830829	4831328	+	0	NA	intron (NM_017417, intron 1 of 10)	LTR5_Hs|LTR|ERVK	1326	NM_017417	26290	Hs.511985	NM_017417	ENSG00000130035	GALNT8	GALNAC-T8	polypeptide N-acetylgalactosaminyltransferase 8	protein-coding
18.8941-2	chr18	25291854	25292353	+	0	NA	Intergenic	Intergenic	324446	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
16.4782-2	chrX	68340329	68340828	+	0	NA	Intergenic	Intergenic	44787	NM_145119	64219	Hs.522679	NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
1.64944-10	chr11	71498547	71499046	+	0	NA	intron (NM_001099653, intron 1 of 4)	CpG	239	NM_152563	55199	Hs.567527	NM_018172	ENSG00000158483	FAM86C1	FAM86C	family with sequence similarity 86 member C1	protein-coding
0.296531-98	chr10	118976104	118976603	+	0	NA	Intergenic	CpG	19353	NM_181840	338567	Hs.449650	NM_181840	ENSG00000186795	KCNK18	K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK	potassium two pore domain channel subfamily K member 18	protein-coding
1.03474-14	chr6	7909965	7910464	+	0	NA	promoter-TSS (NM_001145549)	promoter-TSS (NM_001145549)	96	NM_001145549	81567	Hs.150837	NM_022085	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5	protein-coding
14.9485-12	chr12	104297783	104298282	+	0	NA	intron (NR_027249, intron 4 of 15)	MLT1J2|LTR|ERVL-MaLR	25957	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
0.467237-28	chr7	15055113	15055612	+	0	NA	Intergenic	Intergenic	-174287	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
2.38072-5	chr6	43777000	43777499	+	0	NA	Intergenic	L2b|LINE|L2	37527	NM_001287044	7422	Hs.73793	NM_003376	ENSG00000112715	VEGFA	MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
0.9691-9	chr1	245679466	245679965	+	0	NA	intron (NM_018012, intron 4 of 14)	intron (NM_018012, intron 4 of 14)	361428	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
8.041-7	chr8	37756671	37757170	+	0	NA	promoter-TSS (NM_025151)	promoter-TSS (NM_025151)	95	NM_025151	80223	Hs.191179	NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
53.8616	chr2	214968067	214968566	+	0	NA	intron (NR_047660, intron 12 of 14)	L2a|LINE|L2	-307976	NM_001080500	402117	Hs.534834	NM_001080500	ENSG00000174453	VWC2L	-	von Willebrand factor C domain containing protein 2-like	protein-coding
0.629839-4	chr14	31077587	31078258	+	0	NA	intron (NM_001308097, intron 11 of 13)	MIR|SINE|MIR	-13538	NM_001283033	23256	Hs.369168	NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
0.268721-36	chr16	11296961	11297460	+	0	NA	Intergenic	Intergenic	52829	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
0.296531-84	chr22	29739990	29740489	+	0	NA	intron (NM_001127, intron 11 of 22)	intron (NM_001127, intron 11 of 22)	-10983	NR_037426	100500833		NR_037426	ENSG00000280968	MIR3653	mir-3653	microRNA 3653	ncRNA
17.3049	chr2	85285363	85285862	+	0	NA	3' UTR (NM_020122, exon 7 of 7)	3' UTR (NM_020122, exon 7 of 7)	-74971	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
1.2436-7	chr7	148419755	148420254	+	0	NA	intron (NM_003592, intron 1 of 21)	intron (NM_003592, intron 1 of 21)	24071	NM_003592	8454	Hs.146806	NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
8.56985-3	chr14	100027466	100027965	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	43012	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
3.41035	chr19	10206595	10207094	+	0	NA	exon (NM_001321411, exon 2 of 6)	exon (NM_001321411, exon 2 of 6)	6489	NM_001321411	83854	Hs.712850	NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
13.0364	chr12	26676602	26677101	+	0	NA	intron (NM_002223, intron 37 of 56)	intron (NM_002223, intron 37 of 56)	309280	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
1.55523-9	chr1	181096148	181096647	+	0	NA	Intergenic	Intergenic	38759	NM_016545	51278	Hs.15725	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
1.93142-11	chr7	2758497	2758996	+	0	NA	intron (NM_001321766, intron 6 of 6)	intron (NM_001321766, intron 6 of 6)	30910	NM_001284355	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
0.376307-36	chr5	14250079	14250578	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	106517	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
0.409586-32	chr1	206654444	206654943	+	0	NA	intron (NM_014002, intron 13 of 21)	intron (NM_014002, intron 13 of 21)	6547	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
0.419142-11	chr2	54197919	54198418	+	0	NA	promoter-TSS (NM_001320587)	promoter-TSS (NM_001320587)	-72	NM_001320586	98	Hs.516173	NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
58.2974	chr2	230282611	230283110	+	0	NA	exon (NM_139072, exon 9 of 13)	exon (NM_139072, exon 9 of 13)	-146803	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
13.4199-7	chr1	1234282	1234781	+	0	NA	intron (NM_030649, intron 10 of 23)	intron (NM_030649, intron 10 of 23)	-2981	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
7.44727	chr17	80056646	80057145	+	0	NA	promoter-TSS (NM_004104)	promoter-TSS (NM_004104)	-789	NM_004104	2194	Hs.83190	NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
0.118872-19	chr9	91573588	91574087	+	0	NA	Intergenic	SVA_D|Other|Other	-31941	NM_001142413	286223	Hs.585118	NM_001001938	ENSG00000186354	C9orf47	C9orf108|bA791O21.3	chromosome 9 open reading frame 47	protein-coding
1.15771-38	chr1	107600251	107600750	+	0	NA	3' UTR (NM_018137, exon 1 of 1)	3' UTR (NM_018137, exon 1 of 1)	1233	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
3.41035-23	chr6	41680891	41681390	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	20999	NM_001271945	7942	Hs.485360	NM_007162	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
0.76756-27	chr18	11689266	11689765	+	0	NA	5' UTR (NM_182978, exon 1 of 12)	5' UTR (NM_182978, exon 1 of 12)	501	NM_182978	2774	Hs.136295	NM_002071	ENSG00000141404	GNAL	DYT25	G protein subunit alpha L	protein-coding
1.09579-10	chr11	36355390	36355889	+	0	NA	intron (NM_001160167, intron 1 of 8)	MLT1J|LTR|ERVL-MaLR	37914	NM_001160167	79899	Hs.19987	NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
25.867	chr7	45334755	45335254	+	0	NA	Intergenic	Intergenic	137637	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
4.76254-2	chr10	60028610	60029109	+	0	NA	promoter-TSS (NM_018464)	promoter-TSS (NM_018464)	-3	NM_018464	55847	Hs.370102	NM_018464	ENSG00000122873	CISD1	C10orf70|MDS029|ZCD1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding
1.88425-25	chr12	8851036	8851535	+	0	NA	intron (NM_001297776, intron 1 of 5)	CpG	789	NM_001297776	57494	Hs.504670	NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
3.8405-16	chr17	17109997	17110496	+	0	NA	promoter-TSS (NM_178836)	promoter-TSS (NM_178836)	-600	NM_178836	201164	Hs.729079	NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
0.385789-2	chr17	17109402	17109901	+	0	NA	promoter-TSS (NM_178836)	promoter-TSS (NM_178836)	-5	NM_178836	201164	Hs.729079	NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
0.798767-10	chr16	81598844	81599343	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	31586	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
0.675262-21	chr17	46101114	46101613	+	0	NA	Intergenic	CpG	13250	NR_029687	406943		NR_029687	ENSG00000207947	MIR152	MIRN152|mir-152	microRNA 152	ncRNA
2.07608-3	chr1	1166693	1167192	+	0	NA	promoter-TSS (NM_080605)	promoter-TSS (NM_080605)	505	NM_016176	51150	Hs.42806	NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
23.6754	chr1	93794295	93794794	+	0	NA	intron (NR_034089, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	16824	NR_034089	100131564	Hs.732666	NR_034089		CCDC18-AS1	-	CCDC18 antisense RNA 1	ncRNA
35.157-2	chr7	75513742	75514241	+	0	NA	intron (NM_001040456, intron 3 of 3)	intron (NM_001040456, intron 3 of 3)	5681	NM_001346187	57414	Hs.488827	NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
0.181814-5	chr12	56123790	56124289	+	0	NA	promoter-TSS (NM_001257389)	promoter-TSS (NM_001257389)	-582	NM_001257389	967	Hs.445570	NM_001780	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
1.37272-31	chr6	108883725	108884224	+	0	NA	intron (NM_001455, intron 1 of 2)	intron (NM_001455, intron 1 of 2)	1905	NM_001455	2309	Hs.220950	NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
4.63442-3	chr16	11670768	11671267	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	9212	NM_004862	9516	Hs.459940	NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
2.62013-9	chr18	60092694	60093193	+	0	NA	Intergenic	Intergenic	-97715	NM_017742	54877	Hs.114191	NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
2.28413-11	chr12	45270285	45270784	+	0	NA	promoter-TSS (NM_001145108)	promoter-TSS (NM_001145108)	99	NM_001145107	4753	Hs.505326	NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
2.24754-4	chr7	1177717	1178216	+	0	NA	promoter-TSS (NM_001318252)	promoter-TSS (NM_001318252)	-73	NM_001134396	84310	Hs.653258	NM_032350	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
4.50997-9	chr7	71460010	71460509	+	0	NA	intron (NM_001017440, intron 4 of 5)	LTR9|LTR|ERV1	341949	NM_001017440	83698	Hs.592750	NM_031468	ENSG00000183166	CALN1	CABP8	calneuron 1	protein-coding
6.43974-6	chr20	19956429	19956928	+	0	NA	intron (NM_001242581, intron 8 of 11)	intron (NM_001242581, intron 8 of 11)	-41256	NM_181528	51126	Hs.368783	NM_016100	ENSG00000173418	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
0.867161-9	chr11	6778559	6779058	+	0	NA	Intergenic	Intergenic	11380	NM_001004490	338755	Hs.534614	NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
3.93619-12	chr6	150620919	150621418	+	0	NA	Intergenic	Intergenic	-68860	NM_001164695	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
1.52427-12	chr20	48100592	48101091	+	0	NA	Intergenic	CpG	-1660	NM_004975	3745	Hs.84244	NM_004975	ENSG00000158445	KCNB1	DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
1.18045-8	chr10	121302179	121302678	+	0	NA	promoter-TSS (NM_001005339)	promoter-TSS (NM_001005339)	-206	NM_001005339	6001	Hs.501200	NM_002925	ENSG00000148908	RGS10	-	regulator of G-protein signaling 10	protein-coding
7.56962-12	chr18	55713597	55714096	+	0	NA	promoter-TSS (NM_001144964)	promoter-TSS (NM_001144964)	-612	NM_001144964	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
7.4958-6	chr9	95719375	95719874	+	0	NA	intron (NM_001083536, intron 1 of 17)	L1ME2|LINE|L1	-6619	NM_001286993	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
8.8941-3	chr18	20780637	20781136	+	0	NA	intron (NM_138375, intron 3 of 9)	L3|LINE|CR1	45097	NM_138375	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
2.95849	chr12	15373978	15374477	+	0	NA	5' UTR (NM_032918, exon 1 of 5)	5' UTR (NM_032918, exon 1 of 5)	184	NM_032918	85004	Hs.199487	NM_032918	ENSG00000134533	RERG	-	RAS like estrogen regulated growth inhibitor	protein-coding
0.79355-3	chr12	48513272	48513771	+	0	NA	intron (NM_000289, intron 1 of 22)	intron (NM_000289, intron 1 of 22)	508	NM_000289	5213	Hs.75160	NM_000289	ENSG00000152556	PFKM	ATP-PFK|GSD7|PFK-1|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
0.560111-9	chr20	44718287	44718786	+	0	NA	promoter-TSS (NM_020967)	promoter-TSS (NM_020967)	44	NM_020967	57727	Hs.654991	NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
9.58607-2	chr4	143895437	143895936	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-127998	NM_003866	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
7.39929-7	chr9	17625627	17626126	+	0	NA	intron (NM_003026, intron 1 of 8)	intron (NM_003026, intron 1 of 8)	46924	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
0.329203-16	chrX	102929755	102930254	+	0	NA	TTS (NM_001142419)	TTS (NM_001142419)	11742	NM_001142424	9643	Hs.326387	NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
8.76148-3	chr18	77153807	77154306	+	0	NA	Intergenic	CpG	-1716	NM_001278669	4772	Hs.534074	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T-cells 1	protein-coding
31.5058-2	chr16	81652198	81652697	+	0	NA	intron (NM_030629, intron 2 of 20)	MIR|SINE|MIR	7494	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
16.3451-7	chr2	206524537	206525036	+	0	NA	Intergenic	Intergenic	-22438	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
1.91114-5	chr18	50239870	50240369	+	0	NA	intron (NM_005215, intron 1 of 28)	intron (NM_005215, intron 1 of 28)	373577	NM_005215	1630	Hs.162025	NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
0.227338-16	chr3	64519230	64519729	+	0	NA	intron (NM_182920, intron 37 of 39)	intron (NM_182920, intron 37 of 39)	-27543	NR_110151	101929335	Hs.476604	NR_110150	ENSG00000241158	ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
0.34328-22	chr2	113961402	113961901	+	0	NA	TTS (NM_012455)	TTS (NM_012455)	30091	NM_012455	23550	Hs.516306	NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
0.783135-9	chr21	26793675	26794174	+	0	NA	intron (NR_024027, intron 3 of 4)	MIRc|SINE|MIR	10089	NR_024027	54072	Hs.234016	NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
21.0237-4	chr12	3816171	3816670	+	0	NA	intron (NM_032680, intron 3 of 10)	L3b|LINE|CR1	45946	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
1.64309-12	chr4	42153808	42154307	+	0	NA	exon (NM_001159547, exon 2 of 6)	exon (NM_001159547, exon 2 of 6)	838	NM_001159547	389206	Hs.120591	NM_207406	ENSG00000188848	BEND4	CCDC4	BEN domain containing 4	protein-coding
7.69551-3	chr2	106266825	106267324	+	0	NA	Intergenic	Intergenic	-40058	NR_038891	285000	Hs.737917	NR_038891		LOC285000	-	uncharacterized LOC285000	ncRNA
3.04518-8	chr5	5125913	5126412	+	0	NA	Intergenic	7SK|RNA|RNA	14005	NR_109915	101929176	Hs.208717	NR_109915		CTD-2297D10.2	-	uncharacterized LOC101929176	ncRNA
11.5366-2	chr1	36089048	36089547	+	0	NA	intron (NM_001199779, intron 3 of 5)	intron (NM_001199779, intron 3 of 5)	7841	NM_001199780	5690	Hs.471441	NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome subunit beta 2	protein-coding
0.423927	chr20	30457653	30458152	+	0	NA	promoter-TSS (NM_001008409)	promoter-TSS (NM_001008409)	142	NM_001012644	128853	Hs.434108	NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
0.0877392-33	chr1	110052229	110052728	+	0	NA	promoter-TSS (NM_020703)	promoter-TSS (NM_020703)	-142	NM_020703	57463	Hs.726479	NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
0.0877392-36	chr1	21995979	21996478	+	0	NA	promoter-TSS (NM_001145657)	promoter-TSS (NM_001145657)	-372	NM_001330383	5909	Hs.148178	NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
7.4958-10	chr8	99306269	99306768	+	0	NA	non-coding (NR_135747, exon 1 of 12)	non-coding (NR_135747, exon 1 of 12)	103	NR_135747	79815	Hs.309489	NM_024759	ENSG00000104361	NIPAL2	NPAL2	NIPA like domain containing 2	protein-coding
5.30178-8	chr2	28613256	28613755	+	0	NA	intron (NR_103831, intron 1 of 1)	CpG	-2274	NM_005253	2355	Hs.220971	NM_005253	ENSG00000075426	FOSL2	FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
4.50997-6	chr2	96067698	96068197	+	0	NA	promoter-TSS (NM_016044)	promoter-TSS (NM_016044)	-501	NM_016044	51011	Hs.531247	NM_016044	ENSG00000115042	FAHD2A	CGI-105	fumarylacetoacetate hydrolase domain containing 2A	protein-coding
4.03403-3	chr6	111580209	111580708	+	0	NA	promoter-TSS (NM_153369)	promoter-TSS (NM_153369)	-24	NM_153369	91749	Hs.400572	NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1	major facilitator superfamily domain containing 4B	protein-coding
0.680339-35	chr3	16037534	16038033	+	0	NA	Intergenic	SVA_B|Other|Other	122505	NR_030289	693148		NR_030289	ENSG00000207815	MIR563	MIRN563|hsa-mir-563	microRNA 563	ncRNA
0.589858-17	chr6	28864485	28864984	+	0	NA	intron (NR_104117, intron 1 of 1).6	intron (NR_104117, intron 1 of 1).6	427	NR_104117	414760	Hs.211005	NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14 (non-protein coding)	ncRNA
3.0103-2	chr16	2955201	2955700	+	0	NA	Intergenic	CpG	-6530	NM_020912	84256	Hs.655321	NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
8.01343-11	chr2	184344227	184344726	+	0	NA	Intergenic	SVA_B|Other|Other	355393	NR_109856	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
0.783135-16	chr4	980567	981276	+	0	NA	TTS (NM_022042)	TTS (NM_022042)	136	NM_000203	3425	Hs.89560	NM_000203	ENSG00000127415	IDUA	IDA|MPS1	iduronidase, alpha-L-	protein-coding
6.14394-9	chr2	233099338	233099837	+	0	NA	intron (NM_001257281, intron 10 of 13)	L3|LINE|CR1	-143657	NM_001632	250	Hs.284255	NM_001632	ENSG00000163283	ALPP	ALP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
3.02771-2	chr11	64614549	64615048	+	0	NA	Intergenic	Intergenic	-2757	NM_017525	55561	Hs.293590	NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
11.6941	chr1	235530614	235531113	+	0	NA	5' UTR (NM_001079515, exon 1 of 17)	5' UTR (NM_001079515, exon 1 of 17)	188	NM_001287801	6905	Hs.744998	NM_003193	ENSG00000116957	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
13.6552	chr9	132881923	132882422	+	0	NA	intron (NM_001136557, intron 16 of 19)	AluJb|SINE|Alu	24326	NR_135124	401554	Hs.522437	NR_135124	ENSG00000196979	LOC401554	-	uncharacterized LOC401554	ncRNA
0.213631-3	chr1	848981	849480	+	0	NA	Intergenic	Intergenic	5842	NR_026874	100130417	Hs.200644	NM_175912	ENSG00000223764	LOC100130417	-	uncharacterized LOC100130417	ncRNA
1.19186-3	chr4	8632160	8632659	+	0	NA	Intergenic	Intergenic	38022	NM_001014448	8532	Hs.61995	NM_003652	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
10.9044	chr6	41407348	41407847	+	0	NA	Intergenic	L2b|LINE|L2	-62585	NR_120347	103106903	Hs.563396	NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
1.11821-20	chr2	91844557	91845056	+	0	NA	intron (NR_027238, intron 1 of 3)	intron (NR_027238, intron 1 of 3)	3169	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
30.2182-2	chr2	148617515	148618014	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	15200	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
1.85752-4	chr1	39113531	39114030	+	0	NA	Intergenic	SVA_D|Other|Other	211715	NM_022157	64121	Hs.532461	NM_022157	ENSG00000116954	RRAGC	GTR2|RAGC|TIB929	Ras related GTP binding C	protein-coding
1.63676-12	chr20	307606	308105	+	0	NA	3' UTR (NM_006943, exon 1 of 1)	3' UTR (NM_006943, exon 1 of 1)	1640	NM_006943	6666	Hs.43627	NM_006943	ENSG00000177732	SOX12	SOX22	SRY-box 12	protein-coding
0.428718-27	chr1	115259162	115259661	+	0	NA	TTS (NM_007158)	TTS (NM_007158)	104	NM_002524	4893	Hs.486502	NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6	neuroblastoma RAS viral oncogene homolog	protein-coding
2.11125-5	chr5	96050500	96050999	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	12385	NM_001042444	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding
2.9243-14	chr3	103249716	103250215	+	0	NA	Intergenic	SVA_D|Other|Other	-7005	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
11.5614-3	chr18	74843596	74844095	+	0	NA	intron (NM_001025100, intron 1 of 3)	CpG	929	NM_001025101	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
11.7457	chr6	49518936	49519435	+	0	NA	exon (NM_001145652, exon 1 of 1)	exon (NM_001145652, exon 1 of 1)	1072	NM_001145652	135398	Hs.722010	NM_153344	ENSG00000197261	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
12.3582-3	chr9	131151928	131152427	+	0	NA	non-coding (NR_049743, exon 5 of 5)	non-coding (NR_049743, exon 5 of 5)	-2723	NR_039815	100616335		NR_039815	ENSG00000283335	MIR219B	MIR2964A|hsa-mir-219b|mir-219b	microRNA 219b	ncRNA
32.3508	chr5	158898814	158899313	+	0	NA	Intergenic	HAL1|LINE|L1	-5779	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
2.94992-7	chr12	126868446	126868945	+	0	NA	Intergenic	Intergenic	-58332	NR_130748	100128554	Hs.408255	NR_015398	ENSG00000214043	LOC100128554	-	uncharacterized LOC100128554	ncRNA
0.467237-22	chr3	50653993	50654826	+	0	NA	promoter-TSS (NM_004635)	promoter-TSS (NM_004635)	-153	NM_004635	7867	Hs.234521	NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding
18.4466	chr3	65520414	65520913	+	0	NA	intron (NM_015520, intron 2 of 24)	intron (NM_015520, intron 2 of 24)	-358828	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
2.74905-2	chr5	673966	674465	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	19295	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
1.41463-16	chr5	11602295	11602794	+	0	NA	intron (NR_109988, intron 2 of 21)	LFSINE_Vert|SINE|SINE	-13515	NM_001288716	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
5.83359-10	chr11	118230026	118230525	+	0	NA	promoter-TSS (NM_001204077)	promoter-TSS (NM_001204077)	-21	NM_004788	9354	Hs.75275	NM_004788	ENSG00000110344	UBE4A	E4|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
4.86782-15	chrX	9612271	9612770	+	0	NA	intron (NM_001139468, intron 4 of 17)	intron (NM_001139468, intron 4 of 17)	121485	NM_000273	4935	Hs.74124	NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
15.157-2	chr13	90398722	90399221	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-182304	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	ncRNA
7.42321-8	chr6	30538868	30539367	+	0	NA	promoter-TSS (NM_001025091)	promoter-TSS (NM_001025091)	-53	NM_001025091	23	Hs.655285	NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
22.1753-6	chr8	51298091	51298590	+	0	NA	intron (NM_001321778, intron 2 of 16)	ERVL-B4-int|LTR|ERVL	221649	NM_001321778	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
14.6852	chr2	213102011	213102510	+	0	NA	intron (NM_005235, intron 1 of 27)	L1PA7|LINE|L1	188824	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
8.41638-11	chr8	98787648	98788147	+	0	NA	promoter-TSS (NM_018407)	promoter-TSS (NM_018407)	88	NM_018407	55353	Hs.492314	NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
20.2045-9	chr3	15340451	15340950	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	33436	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
16.038-7	chr16	85327509	85328008	+	0	NA	Intergenic	Intergenic	11194	NR_038859	197196	Hs.679002	NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
2.96709-7	chrX	16713165	16713664	+	0	NA	intron (NM_175859, intron 4 of 18)	intron (NM_175859, intron 4 of 18)	16926	NM_001144002	56474	Hs.227049	NM_019857	ENSG00000047230	CTPS2	-	CTP synthase 2	protein-coding
5.83359-20	chr6	168778048	168778547	+	0	NA	Intergenic	Intergenic	-57863	NM_001286351	168002	Hs.673059	NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
12.6043-2	chr2	171733045	171733544	+	0	NA	Intergenic	L3|LINE|CR1	-51654	NM_001201428	26003	Hs.431317	NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
1.86419-3	chr15	90418122	90418621	+	0	NA	intron (NM_001199058, intron 7 of 9)	intron (NM_001199058, intron 7 of 9)	8891	NR_049807	100846993		NR_049807	ENSG00000264796	MIR5009	-	microRNA 5009	ncRNA
2.66001-5	chr14	101053245	101053744	+	0	NA	Intergenic	Intergenic	-17363	NM_020836	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
0.305841-11	chr7	98990514	98991013	+	0	NA	intron (NM_005720, intron 8 of 9)	CpG-24659	15542	NM_014891	11333	Hs.632296	NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
8.82729-5	chr5	130598549	130599048	+	0	NA	promoter-TSS (NM_001038702)	promoter-TSS (NM_001038702)	-904	NM_001038702	56990	Hs.508829	NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
4.59671-13	chr1	55240695	55241194	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10718	NM_152268	25973	Hs.380169	NM_152268	ENSG00000162396	PARS2	MT-PRORS|proRS	prolyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
2.60428-10	chr8	48572152	48572651	+	0	NA	intron (NM_001282919, intron 10 of 18)	intron (NM_001282919, intron 10 of 18)	78325	NM_005195	1052	Hs.440829	NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein delta	protein-coding
7.61954-17	chr3	125900071	125900570	+	0	NA	promoter-TSS (NM_012190)	promoter-TSS (NM_012190)	-291	NM_001270364	10840	Hs.434435	NM_012190	ENSG00000144908	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family member L1	protein-coding
0.172766-41	chr4	8555638	8556137	+	0	NA	Intergenic	Intergenic	-26077	NR_045511	27201	Hs.740355	NM_080819	ENSG00000155269	GPR78	-	G protein-coupled receptor 78	protein-coding
1.13509-12	chr2	227666001	227666500	+	0	NA	Intergenic	Intergenic	-2744	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
9.46922-12	chr12	106442807	106443306	+	0	NA	Intergenic	Intergenic	90755	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
19.3181-3	chrX	46819759	46820258	+	0	NA	intron (NM_014735, intron 1 of 10)	intron (NM_014735, intron 1 of 10)	48140	NM_014735	9767	Hs.371977	NM_014735	ENSG00000102221	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
7.87812-11	chr2	85293910	85294409	+	0	NA	Intergenic	Intergenic	-66424	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
3.78824-7	chr12	89745199	89745698	+	0	NA	exon (NM_001946, exon 1 of 3)	exon (NM_001946, exon 1 of 3)	1188	NM_022652	1848	Hs.298654	NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
0.213631-14	chr3	58626289	58626788	+	0	NA	intron (NM_138805, intron 6 of 9)	intron (NM_138805, intron 6 of 9)	-13201	NM_001282714	11170	Hs.506357	NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
9.1364-22	chr9	34546735	34547234	+	0	NA	Intergenic	Intergenic	-21026	NR_024369	415056	Hs.734229	NR_024369		CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
2.0204-13	chr15	50978832	50979331	+	0	NA	promoter-TSS (NM_001301212)	promoter-TSS (NM_001301212)	-69	NM_001301212	54822	Hs.512894	NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
3.85103-17	chr12	19493414	19493913	+	0	NA	intron (NM_001143821, intron 18 of 27)	SVA_D|Other|Other	-98945	NM_153207	121536	Hs.126497	NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
3.31614-15	chr4	2464069	2464568	+	0	NA	exon (NM_001193282, exon 15 of 16)	exon (NM_001193282, exon 15 of 16)	-6477	NM_002938	6047	Hs.66394	NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
1.52427-13	chr3	118864121	118864620	+	0	NA	promoter-TSS (NM_152539)	promoter-TSS (NM_152539)	528	NM_152538	152404	Hs.112873	NM_152538	ENSG00000144847	IGSF11	BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3	immunoglobulin superfamily member 11	protein-coding
7.16699-16	chr8	91657279	91657778	+	0	NA	exon (NM_001008495, exon 1 of 3)	exon (NM_001008495, exon 1 of 3)	605	NM_001008495	169200	Hs.567759	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
9.35542-5	chr11	108149164	108149663	+	0	NA	intron (NM_000051, intron 22 of 62)	MSTB1|LTR|ERVL-MaLR	55854	NM_000051	472	Hs.367437	NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
1.23782-4	chr17	56057778	56058277	+	0	NA	exon (NM_007146, exon 4 of 6)	exon (NM_007146, exon 4 of 6)	7588	NM_007146	7716	Hs.463569	NM_007146	ENSG00000136451	VEZF1	DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
9.39302-22	chr11	86451508	86452007	+	0	NA	Intergenic	Intergenic	-50344	NM_001293180	11098	Hs.25338	NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine 23	protein-coding
30.0349	chr3	145657270	145657769	+	0	NA	Intergenic	Intergenic	221763	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
0.486625-22	chr4	184492338	184492837	+	0	NA	Intergenic	Intergenic	65352	NM_001291959	3622	Hs.107153	NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
0.296531-58	chr2	10975282	10975781	+	0	NA	intron (NM_001282705, intron 1 of 13)	intron (NM_001282705, intron 1 of 13)	2572	NM_001282705	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
0.268721-59	chr2	217531219	217531718	+	0	NA	Intergenic	Intergenic	7127	NM_001313990	3485	Hs.438102	NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding
1.71985-13	chr4	100426155	100426654	+	0	NA	Intergenic	L1PBb|LINE|L1	-5757	NM_032149	84103	Hs.97501	NM_032149	ENSG00000138813	C4orf17	-	chromosome 4 open reading frame 17	protein-coding
0.376307-31	chr7	146471092	146471591	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	323360	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
2.21126-2	chr6	111804380	111804879	+	0	NA	promoter-TSS (NR_034111)	promoter-TSS (NR_034111)	-46	NR_034108	643749	Hs.486228	NR_034108	ENSG00000231889	TRAF3IP2-AS1	C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2	TRAF3IP2 antisense RNA 1	ncRNA
3.20572-4	chr15	37402264	37402763	+	0	NA	Intergenic	Intergenic	-9013	NM_002399	4212	Hs.510989	NM_002399	ENSG00000134138	MEIS2	HsT18361|MRG1	Meis homeobox 2	protein-coding
1.16907-5	chr9	129468674	129469173	+	0	NA	Intergenic	Intergenic	92201	NM_002316	4010	Hs.129133	NM_002316	ENSG00000136944	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
2.51812-4	chr7	16404690	16405189	+	0	NA	intron (NM_001101417, intron 2 of 8)	intron (NM_001101417, intron 2 of 8)	56008	NM_001101417	729920	Hs.636502	NM_001101417	ENSG00000214960	ISPD	MDDGA7|MDDGC7|Nip|hCG_1745121	isoprenoid synthase domain containing	protein-coding
0.319843-4	chr9	134609564	134610063	+	0	NA	intron (NM_001304275, intron 1 of 23)	intron (NM_001304275, intron 1 of 23)	3112	NM_005312	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
0.952845-15	chr19	38085779	38086278	+	0	NA	promoter-TSS (NM_001321272)	promoter-TSS (NM_001321272)	297	NM_001172226	163255	Hs.728927	NM_152606	ENSG00000171817	ZNF540	Nbla10512	zinc finger protein 540	protein-coding
6.81937-19	chr13	101596967	101597466	+	0	NA	promoter-TSS (NR_047015)	promoter-TSS (NR_047015)	-598	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
7.56962-5	chr3	134956993	134957492	+	0	NA	intron (NM_004441, intron 12 of 15)	intron (NM_004441, intron 12 of 15)	443143	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
15.7675-9	chr9	129787544	129788043	+	0	NA	intron (NM_001190728, intron 3 of 16)	L1ME1|LINE|L1	63289	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
0.150229-8	chr13	35324400	35324899	+	0	NA	Intergenic	Intergenic	-109827	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	ncRNA
9.39302-2	chr10	73829798	73830297	+	0	NA	intron (NM_014767, intron 6 of 11)	intron (NM_014767, intron 6 of 11)	18484	NM_001244950	9806	Hs.523009	NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2	protein-coding
0.254883-56	chr4	55229357	55229856	+	0	NA	Intergenic	Intergenic	129479	NM_001347830	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
10.942-2	chr1	237634116	237634615	+	0	NA	promoter-TSS (NR_039626)	promoter-TSS (NR_039626)	-54	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
0.675262-10	chr19	47742851	47743350	+	0	NA	Intergenic	CpG	-7077	NM_001127241	27113	Hs.467020	NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
7.21246-5	chr14	104004494	104004993	+	0	NA	Intergenic	Intergenic	9234	NM_152307	115708	Hs.525610	NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
0.883098-14	chr15	34658823	34659322	+	0	NA	intron (NM_153613, intron 1 of 13)	intron (NM_153613, intron 1 of 13)	323	NM_153613	254531	Hs.352614	NM_153613	ENSG00000176454	LPCAT4	AGPAT7|AYTL3|LPAAT-eta|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding
0.15923-32	chr21	39811829	39812328	+	0	NA	intron (NM_001243429, intron 2 of 8)	intron (NM_001243429, intron 2 of 8)	58350	NM_182918	2078	Hs.473819	NM_004449	ENSG00000157554	ERG	erg-3|p55	ERG, ETS transcription factor	protein-coding
49.7469	chr2	30581649	30582148	+	0	NA	Intergenic	Intergenic	12386	NR_122048	285043	Hs.429119	NR_122048		LOC285043	-	uncharacterized LOC285043	ncRNA
2.47184-17	chr8	101773909	101774408	+	0	NA	Intergenic	Intergenic	-39843	NM_002568	26986	Hs.387804	NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
0.376307-43	chr1	203046854	203047353	+	0	NA	3' UTR (NM_001304332, exon 29 of 29)	3' UTR (NM_001304332, exon 29 of 29)	8063	NM_002479	4656	Hs.2830	NM_002479	ENSG00000122180	MYOG	MYF4|bHLHc3|myf-4	myogenin	protein-coding
2.50264-9	chr5	54471907	54472406	+	0	NA	Intergenic	Intergenic	-3151	NM_001145734	166979	Hs.669184	NM_152623	ENSG00000164287	CDC20B	G6VTS76519	cell division cycle 20B	protein-coding
2.10419-6	chr4	8412478	8412977	+	0	NA	intron (NM_003501, intron 5 of 17)	intron (NM_003501, intron 5 of 17)	29725	NM_003501	8310	Hs.479122	NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
1.67491-29	chr2	165477355	165478396	+	0	NA	5' UTR (NM_004490, exon 1 of 14)	5' UTR (NM_004490, exon 1 of 14)	485	NM_004490	2888	Hs.411881	NM_004490	ENSG00000115290	GRB14	-	growth factor receptor bound protein 14	protein-coding
9.87163-8	chr5	142249324	142249823	+	0	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	-1098	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
0.75204-7	chr1	150121953	150122452	+	0	NA	promoter-TSS (NM_001304723)	intron (NM_001304724, intron 1 of 4)	110	NM_016274	51177	Hs.438824	NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
6.6354-2	chr6	37533936	37534435	+	0	NA	Intergenic	Intergenic	-10987	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
2.5649-10	chr9	126116265	126116764	+	0	NA	Intergenic	Intergenic	-1932	NM_173689	286204	Hs.568340	NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs 2, cell polarity complex component	protein-coding
1.07905-19	chr11	32102646	32103145	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-9582	NM_002901	5954	Hs.97887	NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
1.72631-5	chr6	80518476	80518975	+	0	NA	intron (NR_131786, intron 2 of 4)	intron (NR_131786, intron 2 of 4)	3238	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
5.0724-10	chr15	68515029	68515528	+	0	NA	intron (NM_017882, intron 1 of 6)	SVA_A|Other|Other	6802	NM_017882	54982	Hs.584921	NM_017882	ENSG00000128973	CLN6	CLN4A|HsT18960|nclf	ceroid-lipofuscinosis, neuronal 6, late infantile, variant	protein-coding
15.2433-5	chr6	143721443	143721942	+	0	NA	Intergenic	Intergenic	42122	NM_001286259	134637	Hs.709561	NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase, tRNA specific 2	protein-coding
8.86057-18	chr10	101861279	101861778	+	0	NA	Intergenic	Intergenic	-19886	NM_001308	1369	Hs.2246	NM_001308	ENSG00000120054	CPN1	CPN|SCPN	carboxypeptidase N subunit 1	protein-coding
2.24754-5	chr22	44222087	44222586	+	0	NA	intron (NM_014351, intron 6 of 6)	L2a|LINE|L2	-14119	NM_198856	64800	Hs.658996	NM_022785	ENSG00000186976	EFCAB6	DJBP|HSCBCIP1|dJ185D5.1	EF-hand calcium binding domain 6	protein-coding
2.13249-15	chr16	4897155	4897654	+	0	NA	promoter-TSS (NM_001288656)	promoter-TSS (NM_001288656)	-15	NR_136695	84656	Hs.387255	NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60	glyoxylate reductase 1 homolog	protein-coding
8.23909-7	chr11	30981867	30982366	+	0	NA	intron (NM_020869, intron 1 of 19)	intron (NM_020869, intron 1 of 19)	32117	NM_020869	100506627	Hs.530438	NM_020869	ENSG00000170959	DCDC5	-	doublecortin domain containing 5	protein-coding
7.4958	chr8	53153823	53154322	+	0	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	47150	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
1.84422-8	chr4	148655076	148655575	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	1872	NM_024605	79658	Hs.368631	NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
8.41638-5	chr7	54731928	54732427	+	0	NA	Intergenic	CpG	94762	NM_014302	23480	Hs.488282	NM_014302	ENSG00000132432	SEC61G	SSS1	Sec61 translocon gamma subunit	protein-coding
4.97573-11	chr6	87864847	87865346	+	0	NA	promoter-TSS (NM_015021)	promoter-TSS (NM_015021)	-173	NM_015021	23036	Hs.485892	NM_015021	ENSG00000188994	ZNF292	Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
9.35542-4	chr9	127557105	127557604	+	0	NA	exon (NM_182487, exon 3 of 8)	exon (NM_182487, exon 3 of 8)	-5799	NM_001282715	169611	Hs.357004	NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin like 2A	protein-coding
0.94744-8	chr5	32093241	32093740	+	0	NA	intron (NM_178140, intron 21 of 24)	intron (NM_178140, intron 21 of 24)	80935	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
5.18557-3	chr12	30975235	30975734	+	0	NA	Intergenic	CpG	26869	NR_040245	100287314	Hs.355210	NR_040245	ENSG00000235884	LINC00941	-	long intergenic non-protein coding RNA 941	ncRNA
1.99283	chr13	37573793	37574292	+	0	NA	promoter-TSS (NM_001142364)	promoter-TSS (NM_001142364)	-538	NM_001142364	29880	Hs.507769	NM_013338	ENSG00000120697	ALG5	bA421P11.2	ALG5, dolichyl-phosphate beta-glucosyltransferase	protein-coding
30.4624	chr12	29091382	29091881	+	0	NA	Intergenic	Intergenic	-210305	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
0.204516-13	chr19	7968244	7968743	+	0	NA	promoter-TSS (NM_145185)	promoter-TSS (NM_145185)	-172	NM_001297556	5609	Hs.531754	NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
1.54902-13	chr2	119975968	119976467	+	0	NA	Intergenic	Intergenic	-5167	NM_001008410	55240	Hs.647822	NM_018234	ENSG00000115107	STEAP3	AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde	STEAP3 metalloreductase	protein-coding
3.41035-20	chr2	139079254	139079753	+	0	NA	Intergenic	Intergenic	-179847	NM_001001664	339745	Hs.333297	NM_001001664	ENSG00000144228	SPOPL	BTBD33	speckle type BTB/POZ protein like	protein-coding
0.649968-5	chr2	172948997	172949496	+	0	NA	promoter-TSS (NM_178120)	promoter-TSS (NM_178120)	-962	NM_178120	1745	Hs.407015	NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
5.0724-3	chr10	61665437	61665936	+	0	NA	intron (NM_005436, intron 1 of 8)	CpG	728	NM_005436	8030	Hs.591360	NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|TPC|TST1	coiled-coil domain containing 6	protein-coding
0.0305075-42	chr8	54399072	54399571	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-235064	NM_001318497	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
3.44862-7	chr9	26892522	26893021	+	0	NA	promoter-TSS (NM_001167575)	promoter-TSS (NM_001167575)	55	NM_024828	79886	Hs.178357	NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
5.867-9	chr2	15612111	15612610	+	0	NA	intron (NM_015909, intron 16 of 51)	LTR41B|LTR|ERVL	89112	NM_015909	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
17.1897	chr11	95770418	95770917	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-113296	NM_016156	8898	Hs.181326	NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
20.7366	chr4	179214679	179215178	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-385838	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
0.395292	chr2	169630109	169630608	+	0	NA	non-coding (NR_045787, exon 3 of 3)	non-coding (NR_045787, exon 3 of 3)	12581	NR_045787	100861402	Hs.506829	NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
1.27261-2	chr2	119129055	119129554	+	0	NA	Intergenic	Intergenic	-185342	NR_144530	100506797	Hs.116176	NR_144530		LOC100506797	-	uncharacterized LOC100506797	ncRNA
10.5502-3	chr10	71087676	71088175	+	0	NA	intron (NM_001322367, intron 1 of 16)	intron (NM_001322367, intron 1 of 16)	9322	NM_001322367	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|hexokinase	hexokinase 1	protein-coding
1.53663-4	chr20	39766242	39766741	+	0	NA	non-coding (NR_109889, exon 1 of 7)	non-coding (NR_109889, exon 1 of 7)	149	NR_109889	101927117	Hs.668593	NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
1.14639-5	chr3	195623462	195623961	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	-1279	NM_001010938	10188	Hs.518513	NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
5.12862-7	chr6	10528360	10528859	+	0	NA	intron (NM_145649, intron 2 of 4)	intron (NM_145649, intron 2 of 4)	7041	NM_145649	2651	Hs.519884	NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
12.8988	chr4	23891165	23891664	+	0	NA	intron (NM_001330752, intron 2 of 13)	intron (NM_001330752, intron 2 of 13)	286	NM_013261	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
6.05548-2	chr1	43148563	43149062	+	0	NA	non-coding (NR_132737, exon 1 of 7)	non-coding (NR_132737, exon 1 of 7)	154	NR_132737	4904	Hs.473583	NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
21.8842	chr7	131501129	131501628	+	0	NA	Intergenic	Intergenic	-93601	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
0.315171-24	chr19	14097016	14097515	+	0	NA	intron (NM_002918, intron 2 of 20)	intron (NM_002918, intron 2 of 20)	19869	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
0.777937-9	chr3	98450682	98451181	+	0	NA	promoter-TSS (NM_001323352)	promoter-TSS (NM_001323352)	-149	NM_001323362	10402	Hs.148716	NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
0.472076-22	chr2	218662258	218662757	+	0	NA	Intergenic	MIRb|SINE|MIR	-41191	NR_026597	729582	Hs.572788	NR_026597		DIRC3	-	disrupted in renal carcinoma 3	ncRNA
7.87812-5	chr2	214788190	214788689	+	0	NA	intron (NR_047660, intron 10 of 14)	L1PA14|LINE|L1	165648	NR_039640	100616375		NR_039640	ENSG00000265734	MIR4438	-	microRNA 4438	ncRNA
0.486625-9	chr12	3602500	3602999	+	0	NA	promoter-TSS (NR_126055)	promoter-TSS (NR_126055)	-764	NR_126055	100129223	Hs.586788	NR_126055		THCAT155	-	thyroid cancer-associated transcript 155	ncRNA
7.09965	chr10	72124173	72124672	+	0	NA	intron (NR_103468, intron 1 of 2)	intron (NR_103468, intron 1 of 2)	12113	NM_001278213	55222	Hs.7778	NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
5.43634-8	chr7	26215434	26215933	+	0	NA	intron (NM_004289, intron 1 of 3)	SVA_A|Other|Other	23836	NM_004289	9603	Hs.404741	NM_004289	ENSG00000050344	NFE2L3	NRF3	nuclear factor, erythroid 2 like 3	protein-coding
5.34617	chr16	56764194	56764693	+	0	NA	intron (NM_014669, intron 1 of 21)	CpG	426	NM_014669	9688	Hs.276878	NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
0.525663-9	chr7	130792622	130793121	+	0	NA	non-coding (NR_109855, exon 2 of 5)	non-coding (NR_109855, exon 2 of 5)	-1082	NR_024153	378805	Hs.150556	NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
0.241089-8	chr1	26602053	26602552	+	0	NA	intron (NM_001319944, intron 12 of 13)	intron (NM_001319944, intron 12 of 13)	-3911	NM_031286	83442	Hs.109051	NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
4.41291-9	chr6	4282028	4282527	+	0	NA	Intergenic	CpG	-92014	NR_125874	102724096	Hs.571140	NR_125874		LOC102724096	-	uncharacterized LOC102724096	ncRNA
0.118872-39	chr16	30345701	30346200	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	745	NR_002453	595101	Hs.654650	NR_002453	ENSG00000183604	SMG1P5	-	SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5	pseudo
2.13959-16	chr9	112580033	112580532	+	0	NA	intron (NM_001037293, intron 2 of 6)	intron (NM_001037293, intron 2 of 6)	37705	NM_007203	445815	Hs.591908	NM_007203	ENSG00000157654	PALM2-AKAP2	AKAP2	PALM2-AKAP2 readthrough	protein-coding
1.22053-20	chr1	214157178	214157677	+	0	NA	intron (NR_037850, intron 1 of 5)	intron (NR_037850, intron 1 of 5)	2069	NR_037850	100505832	Hs.664625	NR_037850		PROX1-AS1	-	PROX1 antisense RNA 1	ncRNA
8.41638-10	chr16	11945008	11945507	+	0	NA	intron (NM_015659, intron 1 of 8)	CpG	185	NM_015659	26156	Hs.401842	NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
0.565055-11	chr9	107753539	107754038	+	0	NA	Intergenic	Intergenic	-63261	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
1.42065-26	chr15	101141286	101141785	+	0	NA	intron (NM_001040616, intron 1 of 6)	MSTC|LTR|ERVL-MaLR	910	NM_001040616	55180	Hs.105633	NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
3.66532	chr6	18264249	18264748	+	0	NA	intron (NM_001134709, intron 1 of 9)	CpG	301	NM_003472	7913	Hs.484813	NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
2.88193-12	chr5	30202320	30202819	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	321902	NR_134264	105374704	Hs.151157	NR_134264		LOC105374704	-	uncharacterized LOC105374704	ncRNA
7.01147-5	chr6	6702816	6703315	+	0	NA	Intergenic	Intergenic	-80006	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
12.0343-4	chr16	52504441	52504940	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	76116	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
6.79854-5	chr11	71108228	71108727	+	0	NA	Intergenic	Intergenic	25923	NR_038862	399923	Hs.128191	NM_001001680	ENSG00000172900	FLJ42102	-	uncharacterized LOC399923	ncRNA
0.0436481-3	chr2	29559115	29559614	+	0	NA	intron (NM_004304, intron 5 of 28)	intron (NM_004304, intron 5 of 28)	138879	NR_136317	105374389	Hs.196534	NR_136317		LOC105374389	-	uncharacterized LOC105374389	ncRNA
4.77556-8	chr1	226271065	226271564	+	0	NA	Intergenic	CpG	20886	NR_002315	440926	Hs.533624	NR_002315		H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
0.872467-6	chr5	158407146	158407645	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	119375	NM_001324103	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
8.8941-5	chr3	71638177	71638676	+	0	NA	Intergenic	Intergenic	-5286	NM_001244810	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
0.414361-17	chr6	100061593	100062540	+	0	NA	exon (NM_021620, exon 4 of 4)	exon (NM_021620, exon 4 of 4)	7416	NM_021620	59336	Hs.287386	NM_021620	ENSG00000112238	PRDM13	MU-MB-20.220|PFM10	PR/SET domain 13	protein-coding
41.4206-2	chrX	13826326	13826825	+	0	NA	intron (NM_001001996, intron 1 of 7)	MIRb|SINE|MIR	8903	NM_001001995	2824	Hs.495710	NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
0.0392635-32	chr7	154793731	154794230	+	0	NA	intron (NM_007349, intron 1 of 20)	intron (NM_007349, intron 1 of 20)	702	NM_007349	22976	Hs.443881	NM_007349	ENSG00000157212	PAXIP1	CAGF28|CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2	PAX interacting protein 1	protein-coding
0.467237-7	chr1	242375619	242376118	+	0	NA	intron (NM_001320272, intron 6 of 10)	intron (NM_001320272, intron 6 of 10)	-213483	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
0.0921731	chr6	111889541	111890040	+	0	NA	intron (NM_147200, intron 6 of 9)	intron (NM_147200, intron 6 of 9)	-1227	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
0.414361-24	chr3	142305570	142306069	+	0	NA	Intergenic	Intergenic	-8151	NM_001184	545	Hs.271791	NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
19.3181	chr3	159168784	159169283	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	168598	NR_037483	100500803		NR_037483	ENSG00000263634	MIR3919	-	microRNA 3919	ncRNA
0.457575-10	chr22	47134893	47135392	+	0	NA	promoter-TSS (NM_022766)	promoter-TSS (NM_022766)	-990	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
0.296531-91	chr17	54670990	54671489	+	0	NA	5' UTR (NM_005450, exon 1 of 1)	5' UTR (NM_005450, exon 1 of 1)	179	NM_005450	9241	Hs.248201	NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
0.428718-40	chr8	36433626	36434125	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-207967	NR_134267	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium calcium-activated channel subfamily U member 1	protein-coding
0.227338-18	chr2	20595684	20596183	+	0	NA	Intergenic	Intergenic	-45322	NM_015317	23369	Hs.467824	NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
20.0922-3	chr12	104193508	104194007	+	0	NA	intron (NM_001031701, intron 4 of 13)	intron (NM_001031701, intron 4 of 13)	41218	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
3.83-10	chr8	17941542	17942041	+	0	NA	promoter-TSS (NM_177924)	promoter-TSS (NM_177924)	88	NM_177924	427	Hs.527412	NM_004315	ENSG00000104763	ASAH1	AC|ACDase|ASAH|PHP|PHP32|SMAPME	N-acylsphingosine amidohydrolase 1	protein-coding
0.550241-14	chr7	98982278	98982777	+	0	NA	intron (NM_005720, intron 1 of 9)	AluYc|SINE|Alu	10229	NM_005720	10095	Hs.489284	NM_005720	ENSG00000130429	ARPC1B	ARC41|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
1.28427-19	chr22	28430580	28431079	+	0	NA	intron (NM_001145418, intron 12 of 22)	intron (NM_001145418, intron 12 of 22)	-114229	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA
0.2365-11	chr1	150946175	150946674	+	0	NA	intron (NM_181746, intron 1 of 10)	intron (NM_181746, intron 1 of 10)	1055	NM_181746	29956	Hs.744017	NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
2.22573-17	chr2	213591083	213591582	+	0	NA	Intergenic	Intergenic	-68723	NR_131942	102725079	Hs.176124	NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
4.98941-6	chr4	47706628	47707127	+	0	NA	intron (NM_001278586, intron 5 of 13)	intron (NM_001278586, intron 5 of 13)	52191	NR_107020	102467004		NR_107020	ENSG00000277388	MIR8053	hsa-mir-8053	microRNA 8053	ncRNA
7.98603-3	chr12	12487121	12487620	+	0	NA	intron (NM_018050, intron 3 of 3)	intron (NM_018050, intron 3 of 3)	15799	NM_018050	54682	Hs.591145	NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
11.5366	chr22	24181159	24181658	+	0	NA	promoter-TSS (NM_001135751)	promoter-TSS (NM_001135751)	-209	NM_001002862	91319	Hs.593679	NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
1.89096-2	chr8	42995478	42995977	+	0	NA	exon (NM_152419, exon 1 of 18)	exon (NM_152419, exon 1 of 18)	135	NM_152419	138050	Hs.600384	NM_152419	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
22.1396	chr7	155970066	155970565	+	0	NA	Intergenic	Intergenic	214989	NM_001291913	389602	Hs.583071	NM_001291913		LOC389602	-	uncharacterized LOC389602	protein-coding
0.51587-27	chr1	223815747	223816246	+	0	NA	intron (NM_001143962, intron 3 of 16)	intron (NM_001143962, intron 3 of 16)	37440	NM_001143962	388743	Hs.291487	NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
4.53457-5	chr1	188820429	188820928	+	0	NA	Intergenic	Intergenic	1407918	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
0.80399-8	chr8	22017063	22017562	+	0	NA	Intergenic	Intergenic	-1872	NM_001317779	6440	Hs.1074	NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C	surfactant protein C	protein-coding
1.53663-31	chr3	50243245	50243744	+	0	NA	intron (NM_006841, intron 1 of 15)	CpG	815	NM_006841	10991	Hs.76460	NM_006841	ENSG00000188338	SLC38A3	G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
0.296531-37	chr7	105162412	105162911	+	0	NA	promoter-TSS (NM_001318164)	promoter-TSS (NM_001318164)	44	NM_001318164	54517	Hs.520619	NM_019042	ENSG00000091127	PUS7	-	pseudouridylate synthase 7 (putative)	protein-coding
9.50782-14	chr12	32739287	32739786	+	0	NA	intron (NM_001330374, intron 3 of 15)	L2a|LINE|L2	52309	NM_001304480	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
1.07349-13	chr11	46366497	46366996	+	0	NA	promoter-TSS (NM_201533)	promoter-TSS (NM_201533)	-71	NM_201533	8525	Hs.502461	NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
0.291884-31	chr5	132388190	132388689	+	0	NA	intron (NM_002154, intron 1 of 18)	L2b|LINE|L2	777	NM_002154	3308	Hs.90093	NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
0.127808-19	chr20	45946006	45946505	+	0	NA	promoter-TSS (NR_024594)	promoter-TSS (NR_024594)	-991	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
0.91515-15	chr9	109923461	109923960	+	0	NA	Intergenic	L2b|LINE|L2	-58441	NR_126029	340512	Hs.432529	NR_126029	ENSG00000230782	LOC340512	-	uncharacterized LOC340512	ncRNA
0.177288-7	chr6	33796430	33796929	+	0	NA	Intergenic	Intergenic	-24886	NM_001184698	4295	Hs.2813	NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
0.172766-34	chr22	50440167	50440666	+	0	NA	intron (NM_001001694, intron 3 of 14)	intron (NM_001001694, intron 3 of 14)	10639	NM_001001694	400935	Hs.526712	NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
22.644-2	chr7	107714713	107715212	+	0	NA	intron (NM_007356, intron 17 of 33)	AluSz6|SINE|Alu	55839	NM_001318048	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
0.376307-27	chr16	68562431	68562930	+	0	NA	Intergenic	Intergenic	-10436	NM_001305206	146198	Hs.461074	NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
0.273344-14	chr2	180725500	180725999	+	0	NA	promoter-TSS (NR_031659)	promoter-TSS (NR_031659)	-114	NR_031659	100302172		NR_031659	ENSG00000221240	MIR1258	MIRN1258|hsa-mir-1258|mir-1258	microRNA 1258	ncRNA
4.27128-10	chr1	30853018	30853517	+	0	NA	Intergenic	LTR41|LTR|ERVL	-338352	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
17.3755-3	chr1	40264773	40265272	+	0	NA	Intergenic	Intergenic	10374	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
3.24222-3	chr2	236330185	236330684	+	0	NA	Intergenic	Intergenic	-72299	NM_001244888	116987	Hs.435039	NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
0.624821-5	chr5	142421859	142422358	+	0	NA	intron (NM_015071, intron 14 of 22)	intron (NM_015071, intron 14 of 22)	-149957	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
8.69666	chr1	78449005	78449504	+	0	NA	intron (NM_001317099, intron 1 of 3)	LTR5_Hs|LTR|ERVK	3386	NM_001317099	11080	Hs.13852	NM_007034	ENSG00000162616	DNAJB4	DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
0.530567-9	chr10	112562299	112562798	+	0	NA	intron (NM_001134363, intron 7 of 13)	intron (NM_001134363, intron 7 of 13)	68114	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
12.1325	chr11	67349979	67350478	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-838	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
0.209071	chr6	132443926	132444425	+	0	NA	Intergenic	Intergenic	-7772	NR_039673	100616191		NR_039673	ENSG00000265669	MIR548AJ1	-	microRNA 548aj-1	ncRNA
1.11821-2	chr9	116356058	116356557	+	0	NA	promoter-TSS (NM_001276262)	promoter-TSS (NM_001276262)	107	NM_144489	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
1.33122-18	chr4	78927663	78928162	+	0	NA	Intergenic	SVA_B|Other|Other	-50812	NM_025074	80144	Hs.369448	NM_020875	ENSG00000138759	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
2.16811-7	chr5	120494157	120494656	+	0	NA	Intergenic	Intergenic	-163839	NR_104999	102467226		NR_104999		LOC102467226	-	uncharacterized LOC102467226	ncRNA
2.29148-24	chr10	46996340	46996839	+	0	NA	intron (NM_014696, intron 2 of 2)	MIRb|SINE|MIR	3043	NM_014696	9721	Hs.523375	NM_014696	ENSG00000204175	GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
2.52588	chr6	15318664	15319163	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	69827	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
0.462403-3	chr16	2478952	2479451	+	0	NA	promoter-TSS (NM_001323538)	promoter-TSS (NM_001323538)	-191	NM_001323538	899	Hs.1973	NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1	cyclin F	protein-coding
0.685421-12	chr6	127441791	127442290	+	0	NA	intron (NM_032784, intron 1 of 4)	intron (NM_032784, intron 1 of 4)	1992	NM_032784	84870	Hs.135254	NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
17.5696-2	chr4	140075678	140076177	+	0	NA	intron (NM_001331036, intron 1 of 9)	MER4A|LTR|ERV1	-15297	NM_201999	1998	Hs.634040	NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
0.268721-38	chr2	122080375	122080874	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-37846	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
0.472076-8	chr12	98897703	98898202	+	0	NA	promoter-TSS (NR_038383)	promoter-TSS (NR_038383)	-319	NR_038383	643770	Hs.129589	NR_038383	ENSG00000245017	LOC643770	-	uncharacterized LOC643770	ncRNA
0.15923-39	chr1	176665115	176665614	+	0	NA	intron (NM_020318, intron 7 of 22)	intron (NM_020318, intron 7 of 22)	233057	NM_021936	60676	Hs.187284	NM_020318	ENSG00000116183	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
3.68556-3	chr4	174398112	174398611	+	0	NA	intron (NM_001329597, intron 1 of 3)	intron (NM_001329597, intron 1 of 3)	42028	NM_001329597	11341	Hs.7122	NM_007281	ENSG00000164106	SCRG1	SCRG-1	stimulator of chondrogenesis 1	protein-coding
1.49967-18	chr20	5510061	5510560	+	0	NA	Intergenic	MIRb|SINE|MIR	-19662	NR_109860	101929207	Hs.516871	NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
9.17215-17	chr16	15587605	15588104	+	0	NA	intron (NM_033201, intron 1 of 5)	intron (NM_033201, intron 1 of 5)	-8269	NM_001142469	89927	Hs.401798	NM_033201	ENSG00000166780	C16orf45	MINP	chromosome 16 open reading frame 45	protein-coding
0.952845-2	chr15	20990442	20990941	+	0	NA	Intergenic	CpG	-29211	NR_027992	606	Hs.657985	NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
5.80044-8	chr1	168356356	168356855	+	0	NA	Intergenic	Intergenic	11843	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
0.190881-36	chr14	94149464	94149963	+	0	NA	intron (NM_001346218, intron 44 of 50)	MLT1J1|LTR|ERVL-MaLR	105053	NM_178013	145270	Hs.432401	NM_178004	ENSG00000175785	PRIMA1	PRIMA	proline rich membrane anchor 1	protein-coding
0.32452-6	chr4	74734954	74735453	+	0	NA	promoter-TSS (NM_001511)	promoter-TSS (NM_001511)	94	NM_001511	2919	Hs.789	NM_001511	ENSG00000163739	CXCL1	FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1	C-X-C motif chemokine ligand 1	protein-coding
18.8273-4	chr8	106532625	106533124	+	0	NA	intron (NM_012082, intron 3 of 7)	intron (NM_012082, intron 3 of 7)	201727	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
3.64516-5	chr2	42831692	42832191	+	0	NA	intron (NM_001330444, intron 3 of 15)	SVA_F|Other|Other	36284	NM_001330444	57504	Hs.435413	NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
12.7084-2	chr3	25029352	25029851	+	0	NA	intron (NM_001290216, intron 2 of 10)	intron (NM_001290216, intron 2 of 10)	158787	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
10.716-3	chr4	48185039	48185538	+	0	NA	intron (NM_003215, intron 2 of 17)	MIRb|SINE|MIR	-49015	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
1.78486-7	chr10	102038116	102038615	+	0	NA	intron (NM_001001342, intron 3 of 3)	SVA_D|Other|Other	7756	NM_001001342	282991	Hs.34906	NM_173809	ENSG00000196072	BLOC1S2	BLOS2|BORCS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex 1 subunit 2	protein-coding
0.574959-19	chr8	22081372	22081871	+	0	NA	intron (NM_001099335, intron 5 of 5)	intron (NM_001099335, intron 5 of 5)	8230	NM_001099335	9796	Hs.334688	NM_014759	ENSG00000168490	PHYHIP	DYRK1AP3|PAHX-AP|PAHXAP1	phytanoyl-CoA 2-hydroxylase interacting protein	protein-coding
6.92504-13	chr7	112929148	112929647	+	0	NA	Intergenic	LTR40c|LTR|ERVL	-170760	NR_024412	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
1.06793-2	chr7	5553174	5553673	+	0	NA	promoter-TSS (NR_126168)	promoter-TSS (NR_126168)	6	NM_024963	80028	Hs.623974	NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
4.24812-14	chrUn_gl000232	9174	9673	+	0	NA	NA	LTR5_Hs|LTR|ERVK	NA	NA								
15.7675-13	chr18	74331529	74332028	+	0	NA	promoter-TSS (NR_120419)	promoter-TSS (NR_120419)	44	NR_120419	400660	Hs.131718	NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
0.783135-28	chr14	23455742	23456241	+	0	NA	TTS (NM_001282969)	TTS (NM_001282969)	-4140	NM_032876	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
2.97569-15	chr20	61611781	61612280	+	0	NA	Intergenic	Intergenic	26357	NM_080606	128408	Hs.551230	NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
0.624821-14	chr7	75595250	75595749	+	0	NA	intron (NM_000941, intron 2 of 15)	MIRb|SINE|MIR	22398	NR_002955	677801	Hs.689708	NR_002955	ENSG00000201643	SNORA14A	ACA14a	small nucleolar RNA, H/ACA box 14A	snoRNA
0.599818-25	chr11	22800050	22800549	+	0	NA	intron (NM_001143830, intron 7 of 7)	intron (NM_001143830, intron 7 of 7)	50626	NR_135213	258010	Hs.349096	NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
6.0206-7	chr7	127906802	127907301	+	0	NA	Intergenic	Intergenic	25720	NM_000230	3952	Hs.194236	NM_000230	ENSG00000174697	LEP	LEPD|OB|OBS	leptin	protein-coding
8.8941	chr1	225999771	226000270	+	0	NA	intron (NM_001291163, intron 1 of 8)	intron (NM_001291163, intron 1 of 8)	2184	NM_001291163	2052	Hs.89649	NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
0.920515-16	chr9	39078563	39079062	+	0	NA	exon (NM_033655, exon 22 of 24)	exon (NM_033655, exon 22 of 24)	209488	NM_033655	79937	Hs.128474	NM_033655	ENSG00000106714	CNTNAP3	CASPR3|CNTNAP3A	contactin associated protein-like 3	protein-coding
31.8376	chr2	26504033	26504532	+	0	NA	intron (NM_000183, intron 10 of 15)	intron (NM_000183, intron 10 of 15)	36666	NM_001281512	3032	Hs.515848	NM_000183	ENSG00000138029	HADHB	ECHB|MSTP029|MTPB|TP-BETA	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit	protein-coding
1.20331	chr3	75692055	75692554	+	0	NA	Intergenic	LTR43-int|LTR|ERV1	12390	NR_031714	100302212		NR_031714		MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
10.2365-4	chr22	23450096	23450595	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	33896	NM_014433	27156	Hs.526920	NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
4.27128-3	chr6	167609073	167610194	+	0	NA	Intergenic	Intergenic	25552	NM_001145121	401285	Hs.691976	NM_001013683	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
2.59637-2	chr7	95033589	95034088	+	0	NA	TTS (NM_000305)	TTS (NM_000305)	-8151	NM_000940	5446	Hs.440967	NM_000940	ENSG00000105852	PON3	-	paraoxonase 3	protein-coding
1.73277-2	chr16	30596585	30597362	+	0	NA	5' UTR (NM_152458, exon 1 of 3)	5' UTR (NM_152458, exon 1 of 3)	119	NM_152458	146540	Hs.513509	NM_152458	ENSG00000197162	ZNF785	-	zinc finger protein 785	protein-coding
11.7718-3	chr20	48539167	48539666	+	0	NA	intron (NR_134564, intron 2 of 2)	SVA_D|Other|Other	7057	NR_134564	105372653	Hs.589895	NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
1.94499-9	chr4	3927373	3927872	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	29533	NR_130740	348926	Hs.591720	NR_024253	ENSG00000251669	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
0.599818-8	chr8	80212299	80212798	+	0	NA	Intergenic	Intergenic	-310501	NM_007029	11075	Hs.521651	NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
0.996329-18	chr7	26191788	26192287	+	0	NA	5' UTR (NM_004289, exon 1 of 4)	5' UTR (NM_004289, exon 1 of 4)	190	NM_004289	9603	Hs.404741	NM_004289	ENSG00000050344	NFE2L3	NRF3	nuclear factor, erythroid 2 like 3	protein-coding
0.594835-12	chr12	6375503	6376002	+	0	NA	Intergenic	Intergenic	-43850	NM_018173	55200	Hs.631660	NM_018173	ENSG00000008323	PLEKHG6	MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
0.227338-9	chr11	84787414	84787913	+	0	NA	intron (NM_001142699, intron 6 of 27)	intron (NM_001142699, intron 6 of 27)	-153198	NM_001364	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
24.7496-2	chr1	77799093	77799592	+	0	NA	intron (NM_174858, intron 5 of 13)	MER58A|DNA|hAT-Charlie	51055	NM_012093	26289	Hs.559718	NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
0.366845-10	chr2	198650691	198651190	+	0	NA	promoter-TSS (NM_001284358)	promoter-TSS (NM_001284358)	-2	NM_197970	66037	Hs.169797	NM_033030	ENSG00000152430	BOLL	BOULE	boule homolog, RNA binding protein	protein-coding
3.9794-25	chr18	29390410	29390909	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-49816	NM_001034172	147407	Hs.567708	NM_001034172	ENSG00000141437	SLC25A52	MCART2	solute carrier family 25 member 52	protein-coding
0.788339-12	chr1	167772480	167772979	+	0	NA	Intergenic	Intergenic	81542	NM_001146191	9019	Hs.493919	NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
3.45823-8	chr21	20212504	20213003	+	0	NA	Intergenic	L1PA16|LINE|L1	-80623	NR_109925	101927797	Hs.551743	NR_109925		MIR548XHG	-	MIR548X host gene	ncRNA
1.7134-13	chrX	124337495	124337994	+	0	NA	Intergenic	CpG	-116225	NM_001195272	100129520	Hs.728728	NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
6.03801-8	chr3	34066337	34066836	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	226523	NM_001256192	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
2.43364-9	chr11	78523870	78524369	+	0	NA	intron (NM_001098816, intron 13 of 33)	intron (NM_001098816, intron 13 of 33)	-238210	NM_001243251	79731	Hs.503389	NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
2.31362-4	chr3	195906451	195906950	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	31600	NM_001039617	131540	Hs.111591	NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type containing 19	protein-coding
3.39135-7	chr6	124318270	124318769	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	193528	NM_001300738	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
33.3161	chr21	34506087	34506586	+	0	NA	Intergenic	Intergenic	-10330	NR_109961	101928107	Hs.382669	NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
0.741724-10	chr20	5899812	5900311	+	0	NA	intron (NM_001819, intron 3 of 4)	intron (NM_001819, intron 3 of 4)	8087	NM_001819	1114	Hs.516874	NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
1.62412	chr7	2716228	2716727	+	0	NA	Intergenic	Intergenic	-2679	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
0.00869459-13	chr10	45915877	45916376	+	0	NA	intron (NM_001256154, intron 4 of 12)	intron (NM_001256154, intron 4 of 12)	32443	NR_120674	102724323	Hs.559151	NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
0.619809-12	chr15	99644906	99645405	+	0	NA	promoter-TSS (NM_015286)	promoter-TSS (NM_015286)	-131	NM_145728	23336	Hs.207106	NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
14.3771-6	chr4	166161276	166161775	+	0	NA	intron (NM_007246, intron 4 of 14)	intron (NM_007246, intron 4 of 14)	30354	NM_001161521	11275	Hs.388668	NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
0.371573-6	chr4	103265484	103265983	+	0	NA	exon (NM_001135147, exon 2 of 11)	exon (NM_001135147, exon 2 of 11)	615	NM_022154	64116	Hs.288034	NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
0.0833099-48	chr3	156543642	156544141	+	0	NA	promoter-TSS (NM_001004316)	promoter-TSS (NM_001004316)	-205	NM_001004316	389170	Hs.478048	NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
1.10138-6	chr5	145921744	145922243	+	0	NA	Intergenic	Intergenic	-26317	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
0.400052-2	chr4	175321877	175322376	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-22820	NR_036236	100423042		NR_036236	ENSG00000265846	MIR4276	-	microRNA 4276	ncRNA
14.3063-4	chr1	93352379	93352878	+	0	NA	intron (NM_001006605, intron 1 of 4)	MLT1I|LTR|ERVL-MaLR	-9921	NM_001252271	388650	Hs.180946	NM_001006605	ENSG00000154511	FAM69A	-	family with sequence similarity 69 member A	protein-coding
1.53663-6	chr10	47395860	47396359	+	0	NA	intron (NR_027634, intron 2 of 6)	(CCG)n|Simple_repeat|Simple_repeat	16389	NR_027634	439965	Hs.283521	NR_027634		FAM35DP	FAM35B2	family with sequence similarity 35, member A pseudogene	pseudo
13.6151	chr3	7701696	7702195	+	0	NA	intron (NM_000844, intron 8 of 9)	L1MC4|LINE|L1	-124974	NR_046606	100873937	Hs.570608	NR_046606	ENSG00000236202	GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
2.84833-12	chr15	70389986	70390485	+	0	NA	promoter-TSS (NM_020908)	promoter-TSS (NM_020908)	21	NM_001282979	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
18.8941-6	chr14	103285600	103286099	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	42033	NM_145725	7187	Hs.510528	NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor associated factor 3	protein-coding
17.122-4	chr14	78128175	78128674	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-45314	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
2.79841-4	chr3	126263506	126264005	+	0	NA	intron (NR_130715, intron 4 of 5)	intron (NR_130715, intron 4 of 5)	14053	NR_130715	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
49.8716	chr2	80277358	80277857	+	0	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	-183898	NR_107047	102465877		NR_107047	ENSG00000276917	MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
5.96879-11	chr10	105128206	105128705	+	0	NA	intron (NM_006951, intron 1 of 10)	CpG	745	NM_006951	6877	Hs.96103	NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
0.0305075-4	chr4	71859062	71859561	+	0	NA	promoter-TSS (NM_000788)	promoter-TSS (NM_000788)	46	NM_000788	1633	Hs.709	NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
0.883098-10	chr1	198850276	198850775	+	0	NA	intron (NR_040073, intron 2 of 2)	intron (NR_040073, intron 2 of 2)	-22243	NR_029626	406995		NR_029626	ENSG00000207759	MIR181A1	MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213	microRNA 181a-1	ncRNA
2.63603-7	chr14	64362148	64362647	+	0	NA	intron (NM_182914, intron 1 of 115)	AluJb|SINE|Alu	42714	NM_182914	23224	Hs.745014	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
1.86419-15	chr20	35089571	35090070	+	0	NA	promoter-TSS (NM_183006)	promoter-TSS (NM_183006)	2	NM_001042486	22839	Hs.249600	NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
1.91114-4	chr6	166904530	166905029	+	0	NA	intron (NM_001318937, intron 6 of 18)	intron (NM_001318937, intron 6 of 18)	18142	NR_031734	100302141		NR_031734	ENSG00000222958	MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	ncRNA
6.25252-5	chr2	230294208	230294707	+	0	NA	intron (NM_139072, intron 8 of 12)	intron (NM_139072, intron 8 of 12)	-158400	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
14.9349	chr5	12323753	12324252	+	0	NA	Intergenic	LTR9|LTR|ERV1	-250967	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
0.0921731-11	chr17	35305944	35306644	+	0	NA	5' UTR (NM_012138, exon 1 of 12)	5' UTR (NM_012138, exon 1 of 12)	119	NM_012138	26574	Hs.195740	NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
6.75718-18	chr5	137023406	137023905	+	0	NA	intron (NM_017415, intron 5 of 14)	SVA_E|Other|Other	18461	NM_001257195	26249	Hs.655084	NM_017415	ENSG00000146021	KLHL3	PHA2D	kelch like family member 3	protein-coding
4.28291-16	chr5	16275532	16276031	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-95884	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane associated ring-CH-type finger 11	protein-coding
1.20904-12	chr11	3445193	3445692	+	0	NA	Intergenic	Intergenic	-32297	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
49.6658-2	chr2	199564998	199565497	+	0	NA	Intergenic	Intergenic	-325426	NR_110267	101927619	Hs.632942	NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
6.88246-6	chr14	23322198	23322697	+	0	NA	Intergenic	Intergenic	16705	NM_004995	4323	Hs.2399	NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
3.22393-17	chr3	121099192	121099691	+	0	NA	intron (NM_014980, intron 22 of 27)	intron (NM_014980, intron 22 of 27)	165412	NM_199420	10721	Hs.241517	NM_199420	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
25.4821	chr15	41533364	41533863	+	0	NA	intron (NM_007236, intron 1 of 6)	MIR|SINE|MIR	10176	NM_007236	11261	Hs.406234	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin like EF-hand protein 1	protein-coding
1.41463-21	chr4	154495371	154495870	+	0	NA	intron (NM_015196, intron 7 of 34)	intron (NM_015196, intron 7 of 34)	-65700	NR_134873	100419170	Hs.382102	NR_134873	ENSG00000250771	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
10.3198	chr17	16905131	16905630	+	0	NA	Intergenic	Intergenic	-29978	NM_012452	23495	Hs.158341	NM_012452	ENSG00000240505	TNFRSF13B	CD267|CVID|CVID2|IGAD2|RYZN|TACI|TNFRSF14B	TNF receptor superfamily member 13B	protein-coding
0.79355-6	chr2	234262103	234262602	+	0	NA	promoter-TSS (NM_152879)	promoter-TSS (NM_152879)	-801	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
1.80456-3	chr12	40499569	40500068	+	0	NA	promoter-TSS (NM_052885)	promoter-TSS (NM_052885)	-157	NM_052885	114134	Hs.558595	NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
12.9757-2	chr8	95239228	95239727	+	0	NA	Intergenic	Intergenic	-9946	NM_001144663	1015	Hs.591853	NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
0.0788851-23	chr14	89895526	89896025	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	12077	NR_036500	400236	Hs.585207	NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
3.50665-7	chrX	132092255	132092754	+	0	NA	exon (NM_147175, exon 2 of 4)	exon (NM_147175, exon 2 of 4)	2919	NM_147175	90161	Hs.385956	NM_147175	ENSG00000171004	HS6ST2	-	heparan sulfate 6-O-sulfotransferase 2	protein-coding
4.1005-7	chr7	43908285	43908784	+	0	NA	intron (NM_032014, intron 3 of 3)	intron (NM_032014, intron 3 of 3)	611	NM_032014	64951	Hs.284286	NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
2.5649-18	chr12	54019959	54020458	+	0	NA	promoter-TSS (NR_073163)	promoter-TSS (NR_073163)	-9	NM_001206682	11016	Hs.12286	NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
9.66576-21	chr11	48035085	48035584	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	33224	NM_002843	5795	Hs.318547	NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type J	protein-coding
1.30182-9	chr3	64469991	64470490	+	0	NA	Intergenic	Intergenic	-76782	NR_110151	101929335	Hs.476604	NR_110150	ENSG00000241158	ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
24.5593	chr2	209410081	209410580	+	0	NA	intron (NR_136588, intron 1 of 5)	LTR16C|LTR|ERVL	2963	NR_136588	101927960	Hs.159960	NR_136588		LOC101927960	-	uncharacterized LOC101927960	ncRNA
5.67031-4	chr2	120002667	120003166	+	0	NA	non-coding (NR_046721, exon 2 of 2)	non-coding (NR_046721, exon 2 of 2)	3731	NR_046721	100874111	Hs.704682	NR_046721	ENSG00000229867	STEAP3-AS1	-	STEAP3 antisense RNA 1	ncRNA
0.305841-24	chr3	45634585	45635084	+	0	NA	Intergenic	Intergenic	-1489	NM_014240	8994	Hs.193370	NM_014240	ENSG00000144791	LIMD1	-	LIM domains containing 1	protein-coding
38.6967	chr3	17221133	17221632	+	0	NA	intron (NM_014744, intron 19 of 21)	intron (NM_014744, intron 19 of 21)	246694	NR_037465	100500913		NR_037465	ENSG00000154822	MIR3714	-	microRNA 3714	ncRNA
1.64944-14	chr4	6955536	6956035	+	0	NA	promoter-TSS (NM_001330638)	promoter-TSS (NM_001330638)	-108	NM_001330638	57533	Hs.518611	NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
0.609802-9	chr7	73498411	73498910	+	0	NA	intron (NM_002314, intron 1 of 15)	CpG	553	NM_002314	3984	Hs.647035	NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
0.472076-17	chr12	65003956	65004877	+	0	NA	exon (NM_178169, exon 1 of 5)	exon (NM_178169, exon 1 of 5)	123	NM_178169	283349	Hs.643605	NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
33.7779-4	chr17	69781405	69781904	+	0	NA	Intergenic	Intergenic	240466	NR_110876	102723505	Hs.547482	NR_110876	ENSG00000228639	LINC02095	-	long intergenic non-protein coding RNA 2095	ncRNA
0.0877392-7	chr1	185895609	185896108	+	0	NA	intron (NM_031935, intron 9 of 106)	intron (NM_031935, intron 9 of 106)	192175	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
3.36299-15	chr12	44229433	44229932	+	0	NA	promoter-TSS (NM_001286211)	promoter-TSS (NM_001286211)	18	NM_001286212	84216	Hs.444668	NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
9.74694-3	chr8	101571291	101571790	+	0	NA	5' UTR (NM_001270378, exon 1 of 5)	5' UTR (NM_001270378, exon 1 of 5)	399	NM_001270378	157567	Hs.530199	NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
2.24026-2	chr5	32100866	32101365	+	0	NA	intron (NM_178140, intron 23 of 24)	intron (NM_178140, intron 23 of 24)	73310	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
0.579919-14	chr14	33180156	33180655	+	0	NA	intron (NM_004274, intron 9 of 13)	intron (NM_004274, intron 9 of 13)	-228054	NM_001165893	64067	Hs.657892	NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
3.64516-3	chr4	1960765	1961264	+	0	NA	intron (NM_001042424, intron 16 of 21)	intron (NM_001042424, intron 16 of 21)	-15349	NR_003004	677770	Hs.676951	NR_003004	ENSG00000249784	SCARNA22	ACA11	small Cajal body-specific RNA 22	ncRNA
1.31944-22	chr1	201499797	201500296	+	0	NA	Intergenic	Intergenic	11014	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo
8.12479-5	chr10	51202034	51202533	+	0	NA	intron (NM_001303489, intron 1 of 14)	L2a|LINE|L2	169061	NR_029388	728407	Hs.499594	NR_029388		PARGP1	-	poly(ADP-ribose) glycohydrolase pseudogene 1	pseudo
5.11449-4	chr16	4572064	4572563	+	0	NA	intron (NM_001199056, intron 1 of 5)	intron (NM_001199056, intron 1 of 5)	16158	NM_001199054	29965	Hs.654653	NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
7.87812-20	chr6	68053880	68054379	+	0	NA	Intergenic	L1PB3|LINE|L1	-711114	NR_125869	102723883	Hs.566528	NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
12.233-5	chr14	104024783	104025282	+	0	NA	3' UTR (NM_004873, exon 2 of 2)	3' UTR (NM_004873, exon 2 of 2)	3623	NM_004873	9529	Hs.5443	NM_004873	ENSG00000166170	BAG5	BAG-5	BCL2 associated athanogene 5	protein-coding
0.0392635-31	chr11	133869256	133869755	+	0	NA	Intergenic	Intergenic	-32662	NR_027276	100128239	Hs.423734	NR_027276	ENSG00000204241	LOC100128239	-	uncharacterized LOC100128239	ncRNA
14.7625-6	chr14	85507915	85508414	+	0	NA	Intergenic	Intergenic	-345455	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
1.19758-7	chr1	65991059	65991558	+	0	NA	promoter-TSS (NM_001198688)	promoter-TSS (NM_001198688)	-64	NM_001198687	3953	Hs.23581	NM_002303	ENSG00000116678	LEPR	CD295|LEP-R|LEPRD|OB-R|OBR	leptin receptor	protein-coding
16.0555	chr9	135069243	135069742	+	0	NA	intron (NM_032536, intron 2 of 7)	MLT1B|LTR|ERVL-MaLR	32158	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
0.579919-2	chr6	32055259	32055758	+	0	NA	intron (NM_019105, intron 6 of 43).2	CpG	21643	NM_019105	7148	Hs.485104	NM_019105	ENSG00000168477	TNXB	EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
2.51037-8	chr5	168006542	168007384	+	0	NA	promoter-TSS (NM_024594)	promoter-TSS (NM_024594)	-349	NM_024594	79646	Hs.388400	NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
0.315171-14	chr9	132372830	132373329	+	0	NA	intron (NM_001286796, intron 1 of 3)	intron (NM_001286796, intron 1 of 3)	1916	NM_001286796	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
8.63279-6	chr18	34852857	34853356	+	0	NA	exon (NM_020180, exon 7 of 13)	exon (NM_020180, exon 7 of 13)	-1317	NR_134588	105372068	Hs.569903	NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
0.0348833-13	chr4	6230665	6231164	+	0	NA	intron (NR_037863, intron 3 of 3)	intron (NR_037863, intron 3 of 3)	28454	NR_037863	285484	Hs.479068	NR_037863		LOC285484	-	uncharacterized LOC285484	ncRNA
0.400052-22	chr11	20058043	20058542	+	0	NA	intron (NM_001111019, intron 3 of 27)	MER102b|DNA|hAT-Charlie	12557	NR_046672	100874014	Hs.557916	NR_046672	ENSG00000254453	NAV2-AS2	-	NAV2 antisense RNA 2	ncRNA
10.5799-8	chr15	76604957	76605456	+	0	NA	Intergenic	L2a|LINE|L2	-1396	NM_001127716	2108	Hs.39925	NM_000126	ENSG00000140374	ETFA	EMA|GA2|MADD	electron transfer flavoprotein alpha subunit	protein-coding
0.291884-12	chr6	17429868	17430367	+	0	NA	intron (NM_006366, intron 3 of 12)	intron (NM_006366, intron 3 of 12)	36381	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
16.7778-8	chr18	74204234	74205199	+	0	NA	non-coding (NR_136504, exon 2 of 2)	non-coding (NR_136504, exon 2 of 2)	1108	NR_136504	101927989	Hs.665186	NR_136504	ENSG00000265778	LOC101927989	-	uncharacterized LOC101927989	ncRNA
6.75718-10	chr6	35286003	35286502	+	0	NA	intron (NM_022047, intron 7 of 10)	intron (NM_022047, intron 7 of 10)	20657	NM_022047	50619	Hs.15476	NM_022047	ENSG00000023892	DEF6	IBP|SLAT|SWAP70L	DEF6, guanine nucleotide exchange factor	protein-coding
4.98941-3	chr6	150967295	150967794	+	0	NA	intron (NM_001329804, intron 2 of 17)	MLT1K|LTR|ERVL-MaLR	13300	NR_138140	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
1.0513-2	chrX	129735846	129736345	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	107180	NR_027141	55855	Hs.567120	NM_018472		FAM45BP	FAM45B|HT011	family with sequence similarity 45, member A pseudogene	pseudo
3.13364-5	chrX	39435017	39435516	+	0	NA	Intergenic	Intergenic	-85204	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
0.856568-37	chr4	55802052	55802551	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	189461	NM_002253	3791	Hs.479756	NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
9.1364-3	chr7	111630573	111631072	+	0	NA	intron (NM_014705, intron 5 of 51)	intron (NM_014705, intron 5 of 51)	182261	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
2.8735-5	chr17	37490226	37490725	+	0	NA	intron (NM_001184906, intron 2 of 13)	SVA_B|Other|Other	67434	NM_032875	84961	Hs.462946	NM_032875	ENSG00000108306	FBXL20	Fbl2|Fbl20	F-box and leucine rich repeat protein 20	protein-coding
3.31614-5	chr13	73300863	73301362	+	0	NA	promoter-TSS (NM_001286747)	promoter-TSS (NM_001286747)	-775	NM_024808	79866	Hs.643464	NM_024808	ENSG00000136122	BORA	C13orf34	bora, aurora kinase A activator	protein-coding
7.35182-8	chr3	125633934	125634433	+	0	NA	Intergenic	L2c|LINE|L2	-1261	NR_024250	100125556	Hs.553949	NR_024250	ENSG00000171084	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
0.190881-6	chr1	246959516	246960015	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	6846	NR_015422	149134	Hs.720494	NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
3.75718-9	chr6	166260774	166261273	+	0	NA	Intergenic	Intergenic	-140016	NR_027284	441177	Hs.708964	NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
2.48721-18	chr8	146056551	146057050	+	0	NA	intron (NM_001330623, intron 3 of 4)	Kanga1|DNA|TcMar-Tc2	3855	NM_001330623	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
1.15771-27	chr5	14004120	14004619	+	0	NA	Intergenic	Intergenic	-59780	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding
3.05395-3	chr17	70377840	70378629	+	0	NA	Intergenic	Intergenic	39282	NR_135222	146795	Hs.651743	NR_135222	ENSG00000264026	LINC02003	-	long intergenic non-protein coding RNA 2003	ncRNA
2.70835	chr1	235812894	235813393	+	0	NA	5' UTR (NM_001098722, exon 1 of 4)	5' UTR (NM_001098722, exon 1 of 4)	150	NM_001098722	2786	Hs.159711	NM_004485	ENSG00000168243	GNG4	-	G protein subunit gamma 4	protein-coding
0.338583-14	chr19	33166500	33166999	+	0	NA	promoter-TSS (NM_032139)	promoter-TSS (NM_032139)	436	NM_207391	388531	Hs.528491	NM_207391	ENSG00000186326	RGS9BP	PERRS|R9AP|RGS9	regulator of G-protein signaling 9 binding protein	protein-coding
0.127808-30	chr22	22549714	22550213	+	0	NA	Intergenic	Intergenic	-49229	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
7.87812-18	chrUn_gl000225	38953	39452	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5.22879-28	chr7	25021154	25021653	+	0	NA	Intergenic	CpG	-1572	NM_015550	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
0.599818-13	chr1	58429228	58429727	+	0	NA	intron (NM_021080, intron 1 of 16)	intron (NM_021080, intron 1 of 16)	103262	NR_104364	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
4.4855-2	chr1	68297572	68298071	+	0	NA	promoter-TSS (NR_040077)	promoter-TSS (NR_040077)	-150	NR_040077	100289178	Hs.677603	NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12 antisense RNA 1	ncRNA
12.993-7	chr4	105433493	105433992	+	0	NA	intron (NR_125926, intron 1 of 9)	ERV3-16A3_I-int|LTR|ERVL	-17684	NR_132741	80319	Hs.12248	NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
0.101054	chr6	146611318	146611817	+	0	NA	intron (NM_001278067, intron 2 of 7)	MLT1D-int|LTR|ERVL-MaLR	-253261	NM_006834	10981	Hs.287714	NM_006834	ENSG00000118508	RAB32	-	RAB32, member RAS oncogene family	protein-coding
0.209071-2	chr4	185736123	185736622	+	0	NA	intron (NM_001286711, intron 1 of 19)	intron (NM_001286711, intron 1 of 19)	-2959	NM_001286708	2180	Hs.406678	NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long-chain family member 1	protein-coding
0.222764-24	chr5	94620517	94621016	+	0	NA	promoter-TSS (NM_024717)	promoter-TSS (NM_024717)	-487	NM_024717	79772	Hs.591248	NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
1.22629-31	chr8	61679926	61680425	+	0	NA	intron (NM_001316690, intron 1 of 4)	intron (NM_001316690, intron 1 of 4)	26357	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
32.7084	chr8	57532079	57532578	+	0	NA	Intergenic	Intergenic	-59946	NR_038236	100507632	Hs.583755	NR_038236	ENSG00000246430	LINC00968	-	long intergenic non-protein coding RNA 968	ncRNA
1.23205-9	chr11	125983404	125983903	+	0	NA	Intergenic	MIRb|SINE|MIR	-50466	NM_016952	50937	Hs.38034	NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
5.96879-2	chr4	5889945	5890444	+	0	NA	promoter-TSS (NM_001288662)	promoter-TSS (NM_001288662)	149	NM_001313	1400	Hs.135270	NM_001313	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
0.798767-9	chr2	172779060	172779559	+	0	NA	intron (NR_027862, intron 1 of 9)	intron (NR_027862, intron 1 of 9)	374	NM_003642	8520	Hs.632532	NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
2.1254-18	chr5	138609497	138609996	+	0	NA	non-coding (NR_003141, exon 1 of 4)	non-coding (NR_003141, exon 1 of 4)	305	NR_003141	724102	Hs.268939	NR_003141		SNHG4	NCRNA00059|U19H	small nucleolar RNA host gene 4	ncRNA
17.7728	chr18	46474448	46474947	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	1006	NM_001190822	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
0.409586-21	chr16	53788793	53789727	+	0	NA	intron (NM_001080432, intron 1 of 8)	intron (NM_001080432, intron 1 of 8)	51385	NM_001080432	79068	Hs.528833	NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD	FTO, alpha-ketoglutarate dependent dioxygenase	protein-coding
5.73489	chr11	17744043	17744542	+	0	NA	TTS (NM_002478)	TTS (NM_002478)	3182	NM_002478	4654	Hs.181768	NM_002478	ENSG00000129152	MYOD1	MYF3|MYOD|PUM|bHLHc1	myogenic differentiation 1	protein-coding
3.9794-17	chr1	209303093	209303592	+	0	NA	Intergenic	SVA_D|Other|Other	-195459	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
5.8838-9	chr14	99099847	99100346	+	0	NA	Intergenic	Intergenic	-77854	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
0.0656377-19	chr2	11605534	11606208	+	0	NA	intron (NM_001278275, intron 1 of 7)	CpG	432	NM_198256	1876	Hs.603093	NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
0.783135-7	chr15	90728209	90728708	+	0	NA	intron (NM_001324030, intron 1 of 13)	CpG	306	NM_020210	10509	Hs.474935	NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
0.231917-24	chr1	53308183	53308682	+	0	NA	5' UTR (NM_001004339, exon 1 of 14)	5' UTR (NM_001004339, exon 1 of 14)	249	NM_001307931	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	zyg-11 family member A, cell cycle regulator	protein-coding
0.47692-26	chr11	1896793	1897292	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	-4233	NR_107001	102465993		NR_107001	ENSG00000130592	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
3.5164-6	chr5	7927205	7927704	+	0	NA	Intergenic	Intergenic	58237	NM_024010	4552	Hs.481551	NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
0.11441-30	chr1	176850053	176850552	+	0	NA	intron (NM_207108, intron 20 of 21)	intron (NM_207108, intron 20 of 21)	148279	NR_030163	574441		NR_030163	ENSG00000202609	MIR488	MIRN488|hsa-mir-488|mir-488	microRNA 488	ncRNA
1.04025-9	chr1	52498864	52499363	+	0	NA	non-coding (NR_046405, exon 3 of 3)	non-coding (NR_046405, exon 3 of 3)	359	NM_138417	112970	Hs.476033	NM_138417	ENSG00000198841	KTI12	SBBI81|TOT4	KTI12 chromatin associated homolog	protein-coding
20.7935-2	chr2	47456292	47456791	+	0	NA	intron (NR_110207, intron 1 of 2)	intron (NR_110207, intron 1 of 2)	-52466	NM_001305625	805	Hs.468442	NM_001743	ENSG00000143933	CALM2	CAMII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
0.877779-15	chr3	49058764	49059263	+	0	NA	promoter-TSS (NM_018114)	promoter-TSS (NM_018114)	-61	NM_199070	25915	Hs.31387	NM_199069	ENSG00000178057	NDUFAF3	2P1|C3orf60|E3-3	NADH:ubiquinone oxidoreductase complex assembly factor 3	protein-coding
0.510982-18	chr13	22386306	22386805	+	0	NA	Intergenic	Intergenic	65744	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
1.07905-20	chr2	172966816	172967315	+	0	NA	promoter-TSS (NR_126376)	promoter-TSS (NR_126376)	413	NM_004405	1746	Hs.419	NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
17.986	chr17	55595970	55596469	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	4739	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
21.831-2	chr3	32045619	32046118	+	0	NA	Intergenic	Intergenic	-22526	NM_017784	114884	Hs.150122	NM_017784	ENSG00000144645	OSBPL10	ORP10|OSBP9	oxysterol binding protein like 10	protein-coding
13.0277	chr2	166049729	166050228	+	0	NA	intron (NM_001081677, intron 1 of 27)	intron (NM_001081677, intron 1 of 27)	10599	NM_001081677	6328	Hs.435274	NM_006922	ENSG00000153253	SCN3A	NAC3|Nav1.3	sodium voltage-gated channel alpha subunit 3	protein-coding
11.5243	chr6	138165659	138166158	+	0	NA	intron (NR_049793, intron 3 of 3)	LTR5_Hs|LTR|ERVK	-22417	NM_001270507	7128	Hs.211600	NM_006290	ENSG00000118503	TNFAIP3	A20|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
0.0877392-27	chr7	44346908	44347407	+	0	NA	intron (NM_172079, intron 1 of 19)	intron (NM_172079, intron 1 of 19)	18073	NM_001220	816	Hs.351887	NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB	calcium/calmodulin dependent protein kinase II beta	protein-coding
2.20404-5	chr9	131451063	131451562	+	0	NA	promoter-TSS (NM_003011)	promoter-TSS (NM_003011)	-197	NM_003011	6418	Hs.436687	NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
16.5561-5	chr1	247479493	247480244	+	0	NA	intron (NM_001329733, intron 6 of 9)	MSTC|LTR|ERVL-MaLR	15374	NM_001329733	84838	Hs.168677	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
2.00659-12	chr4	23906080	23906781	+	0	NA	intron (NM_001330752, intron 2 of 13)	intron (NM_001330752, intron 2 of 13)	-14730	NM_013261	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
26.1439-2	chr12	6179981	6180480	+	0	NA	intron (NM_000552, intron 10 of 51)	intron (NM_000552, intron 10 of 51)	53611	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
8.96196-6	chr12	27676535	27677034	+	0	NA	promoter-TSS (NM_177444)	promoter-TSS (NM_177444)	-261	NM_003622	8496	Hs.172445	NM_003622	ENSG00000110841	PPFIBP1	L2|SGT2|hSGT2|hSgt2p	PPFIA binding protein 1	protein-coding
0.705811-10	chr5	98104942	98105441	+	0	NA	TTS (NR_033932)	TTS (NR_033932)	192	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule family member b	protein-coding
3.18759-2	chr13	76112022	76112521	+	0	NA	promoter-TSS (NM_001287393)	promoter-TSS (NM_001287393)	-263	NM_203497	170622	Hs.508266	NM_203495	ENSG00000188243	COMMD6	Acrg	COMM domain containing 6	protein-coding
9.95679-15	chr9	117049709	117050208	+	0	NA	intron (NM_032888, intron 41 of 60)	intron (NM_032888, intron 41 of 60)	-35345	NM_000607	5004	Hs.522356	NM_000607	ENSG00000229314	ORM1	AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
0.530567-12	chr1	16983176	16983675	+	0	NA	Intergenic	Intergenic	11356	NR_027504	11209	Hs.349110	NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
0.0436481-20	chr22	47057225	47057724	+	0	NA	intron (NM_015124, intron 5 of 18)	intron (NM_015124, intron 5 of 18)	41175	NM_015124	23151	Hs.475150	NM_015124	ENSG00000075240	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
1.62412-8	chr12	49393012	49393511	+	0	NA	promoter-TSS (NM_015086)	promoter-TSS (NM_015086)	-173	NM_015086	23109	Hs.591044	NM_015086	ENSG00000181418	DDN	-	dendrin	protein-coding
12.2695-2	chrX	71779935	71780434	+	0	NA	intron (NM_001166418, intron 2 of 8)	SVA_B|Other|Other	12769	NM_001166420	55869	Hs.310536	NM_018486	ENSG00000147099	HDAC8	CDA07|CDLS5|HD8|HDACL1|MRXS6|RPD3|WTS	histone deacetylase 8	protein-coding
1.17475-25	chr16	4321929	4322428	+	0	NA	intron (NM_003223, intron 1 of 6)	CpG	823	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
1.39063-4	chr6	117923444	117924232	+	0	NA	promoter-TSS (NM_020399)	promoter-TSS (NM_020399)	-133	NM_001017408	57120	Hs.191539	NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
5.19993	chr14	42488208	42488707	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	412398	NR_144388	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
0.227338-6	chr3	39425547	39426046	+	0	NA	intron (NM_017875, intron 1 of 6)	CpG	981	NM_017875	54977	Hs.369615	NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
0.996329-20	chr19	11908212	11908711	+	0	NA	promoter-TSS (NM_152356)	promoter-TSS (NM_152356)	-930	NM_152356	126069	Hs.631634	NM_152356	ENSG00000177599	ZNF491	-	zinc finger protein 491	protein-coding
0.51587-15	chr6	170231664	170232163	+	0	NA	Intergenic	Intergenic	-32992	NR_026781	401288	Hs.556095	NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
1.28427-5	chr6	123190490	123190989	+	0	NA	Intergenic	Intergenic	80545	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding
2.32102-5	chr2	75251148	75251647	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	65622	NM_019896	56655	Hs.469060	NM_019896	ENSG00000115350	POLE4	YHHQ1|p12	DNA polymerase epsilon 4, accessory subunit	protein-coding
0.118872-57	chr10	116547581	116548080	+	0	NA	Intergenic	SVA_D|Other|Other	-19846	NM_001322884	3983	Hs.438236	NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
2.41845-9	chr10	133795267	133795766	+	0	NA	promoter-TSS (NM_004052)	promoter-TSS (NM_004052)	1	NM_004052	664	Hs.144873	NM_004052	ENSG00000176171	BNIP3	NIP3	BCL2 interacting protein 3	protein-coding
0.310503-36	chrX	75776145	75776644	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	128348	NM_020932	57692	Hs.8453	NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
0.305841-29	chr5	140904237	140904736	+	0	NA	intron (NM_001079812, intron 25 of 26)	intron (NM_001079812, intron 25 of 26)	-33392	NR_038333	100505658	Hs.655458	NR_038333	ENSG00000246422	LOC100505658	-	uncharacterized LOC100505658	ncRNA
1.09579-21	chr20	31886825	31887324	+	0	NA	intron (NM_033197, intron 7 of 15)	intron (NM_033197, intron 7 of 15)	16133	NM_033197	92747	Hs.65551	NM_033197	ENSG00000125999	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B member 1	protein-coding
1.53663-8	chr1	27849522	27850021	+	0	NA	Intergenic	Intergenic	-33073	NM_006990	10163	Hs.469244	NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family member 2	protein-coding
27.7989-2	chr3	138828067	138828566	+	0	NA	intron (NR_026783, intron 2 of 2)	intron (NR_026783, intron 2 of 2)	5289	NR_026783	60467	Hs.512673	NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)	ncRNA
15.986-3	chr14	20904021	20904520	+	0	NA	promoter-TSS (NM_001109997)	promoter-TSS (NM_001109997)	-469	NM_001109997	123103	Hs.556014	NM_001109997	ENSG00000185271	KLHL33	-	kelch like family member 33	protein-coding
8.82729	chr7	5862358	5862857	+	0	NA	promoter-TSS (NR_023382)	promoter-TSS (NR_023382)	-184	NR_023382	401303	Hs.372707	NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
0.118872-34	chr20	32609014	32609513	+	0	NA	intron (NM_007367, intron 1 of 8)	MSTD|LTR|ERVL-MaLR	-27090	NR_109886	101926888	Hs.405849	NR_109885	ENSG00000228265	RALY-AS1	-	RALY antisense RNA 1	ncRNA
2.1254-8	chr1	230560008	230560507	+	0	NA	intron (NM_001258311, intron 1 of 6)	intron (NM_001258311, intron 1 of 6)	1417	NM_001258311	79605	Hs.520463	NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
5.80044-11	chr7	150638918	150639417	+	0	NA	Intergenic	Intergenic	13750	NM_001204798	3757	Hs.647099	NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
4.49772-8	chr18	3652717	3653216	+	0	NA	intron (NM_001003809, intron 4 of 9)	intron (NM_001003809, intron 4 of 9)	49231	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
3.76751-6	chr3	129370367	129370866	+	0	NA	non-coding (NR_033361, exon 4 of 4)	non-coding (NR_033361, exon 4 of 4)	36959	NR_033361	23023	Hs.477547	NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
1.02373-24	chr17	40032695	40033194	+	0	NA	intron (NM_198830, intron 21 of 27)	SVA_D|Other|Other	-11260	NM_018143	55175	Hs.13268	NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
3.03644-10	chr15	47593575	47594074	+	0	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	117421	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
0.213631-10	chr2	192579571	192580070	+	0	NA	Intergenic	UCON28a|Unknown|Unknown	24913	NR_131917	105747689	Hs.104972	NR_131917		LOC105747689	-	uncharacterized LOC105747689	ncRNA
11.5927	chr11	63438915	63439414	+	0	NA	promoter-TSS (NM_015459)	promoter-TSS (NM_015459)	38	NM_015459	25923	Hs.356719	NM_015459	ENSG00000184743	ATL3	HSN1F	atlastin GTPase 3	protein-coding
0.127808-33	chr9	132124436	132124935	+	0	NA	Intergenic	Intergenic	25483	NR_120685	100506119	Hs.624047	NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
0.570004-9	chr22	39898036	39898535	+	0	NA	promoter-TSS (NR_130789)	promoter-TSS (NR_130789)	50	NR_130790	54471	Hs.728085	NM_013298	ENSG00000100335	MIEF1	HSU79252|MID51|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
1.84422-4	chr2	172864551	172865050	+	0	NA	promoter-TSS (NM_001322279)	promoter-TSS (NM_001322279)	-4	NR_136273	254042	Hs.298250	NM_199227	ENSG00000172878	METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D, mitochondrial	protein-coding
4.28291-11	chr4	87759205	87759704	+	0	NA	intron (NM_197965, intron 1 of 5)	intron (NM_197965, intron 1 of 5)	10962	NM_197965	345274	Hs.452996	NM_197965	ENSG00000145283	SLC10A6	SOAT	solute carrier family 10 member 6	protein-coding
0.814455-3	chr12	109232003	109232502	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	-1470	NR_030350	693204		NR_030350	ENSG00000207622	MIR619	MIRN619|hsa-mir-619	microRNA 619	ncRNA
4.00117-6	chr6	153466616	153467115	+	0	NA	Intergenic	L1PBa|LINE|L1	-14476	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
0.132283-44	chrX	18725399	18726187	+	0	NA	5' UTR (NM_152224, exon 4 of 19)	5' UTR (NM_152224, exon 4 of 19)	-14987	NR_046642	100874004		NR_046642		PPEF1-AS1	-	PPEF1 antisense RNA 1	ncRNA
0.132283-41	chr14	24605007	24605506	+	0	NA	promoter-TSS (NM_001281529)	promoter-TSS (NM_001281529)	-111	NM_001281528	5720	Hs.75348	NM_006263	ENSG00000092010	PSME1	HEL-S-129m|IFI5111|PA28A|PA28alpha|REGalpha	proteasome activator subunit 1	protein-coding
0.0921731-13	chr2	26568852	26569351	+	0	NA	promoter-TSS (NM_001321975)	promoter-TSS (NM_001321975)	147	NR_137633	85465	Hs.189073	NM_033505	ENSG00000138018	SELENOI	EPT1|SELI|SEPI	selenoprotein I	protein-coding
24.034-2	chr7	69272556	69273055	+	0	NA	intron (NM_015570, intron 1 of 18)	MLT1F1|LTR|ERVL-MaLR	208900	NM_015570	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
6.88246	chr4	24913899	24914398	+	0	NA	intron (NM_001330644, intron 1 of 12)	intron (NM_001330644, intron 1 of 12)	452	NM_001130726	91050	Hs.106432	NM_173463	ENSG00000181982	CCDC149	-	coiled-coil domain containing 149	protein-coding
4.86782-11	chr2	202507802	202508301	+	0	NA	promoter-TSS (NM_152388)	promoter-TSS (NM_152388)	201	NM_001044385	65062	Hs.12319	NM_152388	ENSG00000155755	TMEM237	ALS2CR4|JBTS14	transmembrane protein 237	protein-coding
0.899095	chr7	43622045	43622544	+	0	NA	promoter-TSS (NM_004760)	promoter-TSS (NM_004760)	-398	NM_004760	9263	Hs.709489	NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
0.888424-25	chr3	93723088	93723587	+	0	NA	intron (NM_001174150, intron 3 of 9)	intron (NM_001174150, intron 3 of 9)	24117	NM_001001850	415117	Hs.679768	NM_001001850	ENSG00000178750	STX19	-	syntaxin 19	protein-coding
2.38072-14	chr7	51346461	51346960	+	0	NA	intron (NM_001287438, intron 1 of 7)	intron (NM_001287438, intron 1 of 7)	37848	NM_001346442	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
0.11441-29	chr1	179711838	179712529	+	0	NA	promoter-TSS (NM_001329717)	promoter-TSS (NM_001329717)	-115	NM_001329712	148753	Hs.400696	NM_173509	ENSG00000143340	FAM163A	C1orf76|NDSP	family with sequence similarity 163 member A	protein-coding
1.82435-4	chr1	145075656	145076155	+	0	NA	5' UTR (NM_022359, exon 1 of 7)	5' UTR (NM_022359, exon 1 of 7)	281	NM_022359	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
0.199966-16	chr16	23159838	23160337	+	0	NA	exon (NM_020718, exon 1 of 16)	exon (NM_020718, exon 1 of 16)	504	NM_020718	57478	Hs.183817	NM_020718	ENSG00000103404	USP31	-	ubiquitin specific peptidase 31	protein-coding
0.132283-17	chr13	94628743	94629242	+	0	NA	intron (NM_005708, intron 3 of 8)	intron (NM_005708, intron 3 of 8)	-118266	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
4.14539-4	chr6	125691454	125691953	+	0	NA	Intergenic	Intergenic	-68421	NM_016063	51020	Hs.32826	NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
0.145735-15	chr7	106808904	106809403	+	0	NA	promoter-TSS (NM_001244262)	promoter-TSS (NM_001244262)	-253	NM_001244262	26959	Hs.162032	NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
0.9691-4	chr7	76009129	76009628	+	0	NA	Intergenic	CpG	-17463	NM_007155	7784	Hs.656137	NM_007155	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
7.03335-6	chr11	93473969	93474468	+	0	NA	promoter-TSS (NM_001286067)	promoter-TSS (NM_001286067)	485	NM_024116	79101	Hs.355750	NM_024116	ENSG00000166012	TAF1D	JOSD3|RAFI41|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I subunit D	protein-coding
4.93495-6	chr18	77724285	77724784	+	0	NA	promoter-TSS (NM_001136180)	promoter-TSS (NM_001136180)	-48	NM_001136180	440498	Hs.191582	NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
3.90406-4	chr8	136180421	136180920	+	0	NA	Intergenic	Intergenic	-65704	NR_120396	286094	Hs.440978	NR_026706	ENSG00000254083	LINC01591	-	long intergenic non-protein coding RNA 1591	ncRNA
0.385789-12	chrX	119445094	119445593	+	0	NA	promoter-TSS (NM_001104544)	promoter-TSS (NM_001104544)	48	NM_001104544	55026	Hs.437563	NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
7.23538-3	chr11	2207950	2208449	+	0	NA	Intergenic	Intergenic	13906	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
3.60514-3	chr16	29465504	29466003	+	0	NA	promoter-TSS (NM_001320628)	promoter-TSS (NM_001320628)	-69	NM_178044	79008	Hs.728161	NM_024044	ENSG00000181625	SLX1B	GIYD2	SLX1 homolog B, structure-specific endonuclease subunit	protein-coding
2.30623-20	chr16	74401913	74402412	+	0	NA	promoter-TSS (NR_026950)	promoter-TSS (NR_026950)	-9	NR_026950	283922	Hs.558726	NR_026950	ENSG00000214331	LOC283922	-	pyruvate dehydrogenase phosphatase regulatory subunit pseudogene	pseudo
10.7469-4	chr12	104983682	104984181	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-1480	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
1.6877-3	chr4	1713183	1713682	+	0	NA	intron (NM_001306075, intron 1 of 6)	CpG	1036	NM_001306074	7884	Hs.298345	NM_006527	ENSG00000163950	SLBP	HBP	stem-loop binding protein	protein-coding
7.61954-20	chr3	73237947	73238446	+	0	NA	Intergenic	Intergenic	127386	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
2.61219-25	chr9	125615137	125615636	+	0	NA	TTS (NM_018835)	TTS (NM_018835)	-24451	NM_005388	5082	Hs.271749	NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
3.1158-4	chr13	34755838	34756337	+	0	NA	Intergenic	SVA_D|Other|Other	363881	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
11.9791-2	chr2	70316651	70317150	+	0	NA	TTS (NM_006196)	TTS (NM_006196)	2315	NM_006196	5093	Hs.2853	NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
18.5387-2	chr2	179131052	179131551	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	-53670	NM_145739	114880	Hs.318775	NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
2.16811-13	chr8	54797695	54798194	+	0	NA	intron (NR_104579, intron 1 of 3)	AluY|SINE|Alu	4512	NR_104579	8601	Hs.368733	NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G-protein signaling 20	protein-coding
0.0744648-19	chr16	72882888	72883387	+	0	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	-184229	NR_126330	101927957	Hs.637253	NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
13.6452	chr4	123377736	123378235	+	0	NA	promoter-TSS (NM_000586)	promoter-TSS (NM_000586)	-335	NM_000586	3558	Hs.89679	NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
0.00434512-27	chr5	17727214	17727713	+	0	NA	Intergenic	Intergenic	-79920	NR_134286	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
3.14258-2	chr13	110439855	110440354	+	0	NA	Intergenic	CpG	-1190	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
18.1816-3	chr8	75263256	75263755	+	0	NA	intron (NM_018972, intron 1 of 5)	intron (NM_018972, intron 1 of 5)	887	NM_001040875	54332	Hs.168950	NM_018972	ENSG00000104381	GDAP1	CMT4|CMT4A|CMTRIA	ganglioside induced differentiation associated protein 1	protein-coding
9.17215-16	chr8	140691280	140691779	+	0	NA	intron (NM_001282534, intron 1 of 1)	intron (NM_001282534, intron 1 of 1)	23770	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
19.431	chr2	19418570	19419069	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-129371	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
9.35542-9	chr2	228466661	228467160	+	0	NA	Intergenic	Intergenic	31126	NM_020161	56918	Hs.283092	NM_020161	ENSG00000042304	C2orf83	-	chromosome 2 open reading frame 83	protein-coding
0.0833099-11	chr3	128712369	128713216	+	0	NA	intron (NM_020741, intron 1 of 7)	CpG	194	NM_020741	57501	Hs.518247	NM_020741	ENSG00000114656	KIAA1257	-	KIAA1257	protein-coding
14.0012-4	chr10	45952162	45952661	+	0	NA	3' UTR (NM_001282866, exon 8 of 8)	3' UTR (NM_001282866, exon 8 of 8)	-3842	NR_120674	102724323	Hs.559151	NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
0.181814-7	chr20	25129209	25129708	+	0	NA	promoter-TSS (NR_027093)	promoter-TSS (NR_027093)	-32	NR_027091	284798	Hs.334934	NR_027091	ENSG00000230725	LOC284798	-	uncharacterized LOC284798	ncRNA
0.0921731-21	chr11	61468711	61469210	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	21055	NM_006133	747	Hs.241564	NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR	diacylglycerol lipase alpha	protein-coding
7.64472	chr11	9160570	9161069	+	0	NA	3' UTR (NM_015213, exon 23 of 23)	3' UTR (NM_015213, exon 23 of 23)	44909	NR_027713	283102	Hs.689472	NR_027713	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
3.05395-11	chr13	73356163	73356662	+	0	NA	promoter-TSS (NM_001322349)	promoter-TSS (NM_001322349)	-146	NM_014953	22894	Hs.744104	NM_014953	ENSG00000083520	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
22.2988	chr12	74628551	74629050	+	0	NA	intron (NR_038300, intron 3 of 6)	ERVL-B4-int|LTR|ERVL	57611	NR_038300	100507377	Hs.455715	NR_038300	ENSG00000251138	LOC100507377	-	uncharacterized LOC100507377	ncRNA
8.23909-4	chr17	64945534	64946033	+	0	NA	Intergenic	Intergenic	-15197	NM_014405	27092	Hs.514423	NM_014405	ENSG00000075461	CACNG4	-	calcium voltage-gated channel auxiliary subunit gamma 4	protein-coding
1.76526-11	chrX	109561218	109561717	+	0	NA	promoter-TSS (NM_015365)	promoter-TSS (NM_015365)	-87	NM_015365	9949	Hs.656243	NM_015365	ENSG00000101935	AMMECR1	AMMERC1	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding
2.04815-21	chr1	165826682	165827181	+	0	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	30199	NM_012474	7371	Hs.458360	NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
0.127808-5	chr11	86282497	86282996	+	0	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	100494	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
0.974532-4	chr2	136756252	136756751	+	0	NA	intron (NR_110199, intron 2 of 3)	intron (NR_110199, intron 2 of 3)	-13247	NM_001293312	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	HBSL|aspRS	aspartyl-tRNA synthetase	protein-coding
2.07608-7	chr9	44993245	44993744	+	0	NA	Intergenic	SST1|Satellite|centr	3258	NR_027421	100132948	Hs.645763	NM_001024942	ENSG00000154537	FAM27C	FAM27A|FAM27A1|FAM27A3|bA7G23.5	family with sequence similarity 27 member C	ncRNA
25.9007	chr11	126229445	126229944	+	0	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	3905	NM_006278	6484	Hs.591947	NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
6.96804-4	chr1	247179442	247179941	+	0	NA	intron (NR_037894, intron 1 of 6)	LTR5_Hs|LTR|ERVK	-8296	NM_001204221	57116	Hs.669893	NM_020394	ENSG00000197472	ZNF695	SBZF3	zinc finger protein 695	protein-coding
3.44862-5	chr13	105928882	105929381	+	0	NA	Intergenic	Intergenic	-189085	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
8.76148-17	chr18	46066742	46067241	+	0	NA	intron (NM_001142397, intron 2 of 12)	CpG-11781	1564	NM_014772	9811	Hs.145230	NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
2.17527-2	chr12	53614490	53614989	+	0	NA	promoter-TSS (NM_001243732)	promoter-TSS (NM_001243732)	-542	NM_001042728	5916	Hs.1497	NM_000966	ENSG00000172819	RARG	NR1B3|RARC	retinoic acid receptor gamma	protein-coding
2.46417-2	chr17	78874549	78875048	+	0	NA	intron (NM_001163034, intron 16 of 29)	intron (NM_001163034, intron 16 of 29)	-90843	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
6.96804-9	chr16	81538524	81539023	+	0	NA	intron (NM_030629, intron 1 of 20)	MLT1I|LTR|ERVL-MaLR	9819	NM_030629	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
1.54902-3	chr9	99416881	99417380	+	0	NA	intron (NM_153698, intron 1 of 5)	CpG-26800	469	NM_153698	195827	Hs.44640	NM_153698	ENSG00000158122	AAED1	C9orf21	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding
0.141246-11	chr15	59063188	59063687	+	0	NA	promoter-TSS (NR_135474)	promoter-TSS (NR_135474)	46	NM_001040450	54629	Hs.591122	NM_019092	ENSG00000128923	FAM63B	-	family with sequence similarity 63 member B	protein-coding
0.660068-13	chr10	23094216	23094715	+	0	NA	Intergenic	Intergenic	-90962	NM_005028	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
16.0555-3	chr2	194848876	194849375	+	0	NA	Intergenic	Intergenic	-359868	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
12.6761-2	chr14	62026835	62027334	+	0	NA	intron (NR_110417, intron 3 of 3)	intron (NR_110417, intron 3 of 3)	9828	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
4.36519-20	chrUn_gl000220	92792	93291	+	0	NA	Intergenic	Intergenic	-4088	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
0.872467-3	chr15	34393444	34393943	+	0	NA	promoter-TSS (NM_152595)	promoter-TSS (NM_152595)	360	NM_020154	56851	Hs.160565	NM_020154	ENSG00000134153	EMC7	C11orf3|C15orf24|HT022|ORF1-FL1	ER membrane protein complex subunit 7	protein-coding
4.43697-5	chr1_gl000192_random	544695	545194	+	0	NA	Intergenic	Intergenic	-76261	NR_120328	102724558	Hs.712738	NR_120328		CH17-408M7.1	-	uncharacterized LOC102724558	ncRNA
0.685421-6	chr16	71401182	71401681	+	0	NA	intron (NR_027910, intron 1 of 9)	intron (NR_027910, intron 1 of 9)	8815	NM_001740	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
5.34617-3	chr3	194854134	194854633	+	0	NA	TTS (NR_036089)	TTS (NR_036089)	926	NR_036089	100422926		NR_036089	ENSG00000265333	MIR3137	-	microRNA 3137	ncRNA
7.85156-3	chrY	14575154	14575653	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-42014	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4.68521-16	chr1	225923383	225923882	+	0	NA	Intergenic	Intergenic	-41883	NM_001130440	6726	Hs.511425	NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
3.42944-2	chr11	34851833	34852553	+	0	NA	Intergenic	Intergenic	-85484	NM_001135024	8050	Hs.502315	NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding
5.0724-8	chr7	105221498	105221997	+	0	NA	intron (NR_027068, intron 1 of 4)	intron (NR_027068, intron 1 of 4)	229	NR_027068	100130771	Hs.719432	NR_027068	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	ncRNA
3.43902-13	chr1	213523595	213524094	+	0	NA	Intergenic	Intergenic	299269	NM_001136138	26750	Hs.591416	NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
1.10698-14	chr5	175625919	175626418	+	0	NA	intron (NR_036494, intron 1 of 25)	CpG	130	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
0.985417-16	chr1	22466174	22466673	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	3096	NM_030761	54361	Hs.25766	NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
8.50781-11	chr1	179051796	179052295	+	0	NA	intron (NM_022371, intron 1 of 5)	intron (NM_022371, intron 1 of 5)	933	NM_022371	64222	Hs.584957	NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
0.788339-22	chr11	61600747	61601246	+	0	NA	intron (NM_004265, intron 1 of 11)	intron (NM_004265, intron 1 of 11)	5491	NM_004265	9415	Hs.502745	NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
2.47184-4	chr10	9896947	9897446	+	0	NA	Intergenic	SVA_B|Other|Other	-203489	NR_120636	101928298	Hs.385576	NR_120636	ENSG00000224788	LOC101928298	-	uncharacterized LOC101928298	ncRNA
8.8941-9	chr4	26112103	26112602	+	0	NA	Intergenic	Intergenic	196538	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7	small integral membrane protein 20	protein-coding
6.1261-7	chr8	37740986	37741485	+	0	NA	intron (NM_001002814, intron 1 of 5)	intron (NM_001002814, intron 1 of 5)	15780	NM_025151	80223	Hs.191179	NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
11.7198	chr7	91755586	91756085	+	0	NA	intron (NM_000786, intron 4 of 9)	intron (NM_000786, intron 4 of 9)	8005	NM_000786	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
2.83997	chr14	39654121	39654620	+	0	NA	Intergenic	AluJr4|SINE|Alu	9983	NM_002687	5411	Hs.409965	NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
5.60667-5	chr8	22483656	22484155	+	0	NA	intron (NM_018688, intron 6 of 8)	intron (NM_018688, intron 6 of 8)	15817	NR_027715	80094	Hs.675917	NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
7.14443-12	chr2	111141854	111142353	+	0	NA	promoter-TSS (NR_027244)	promoter-TSS (NR_027244)	-1	NR_046112	440894	Hs.516403	NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
4.41291-7	chr2	42356237	42356736	+	0	NA	Intergenic	Intergenic	-39992	NM_019063	27436	Hs.713173	NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
0.624821-18	chr15	67468976	67469475	+	0	NA	intron (NM_001145102, intron 5 of 8)	intron (NM_001145102, intron 5 of 8)	10732	NM_001145104	4088	Hs.727986	NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
1.39063-9	chr8	23019359	23019858	+	0	NA	intron (NM_003840, intron 1 of 8)	intron (NM_003840, intron 1 of 8)	1935	NM_003840	8793	Hs.213467	NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
0.371573-19	chr20	46958545	46959044	+	0	NA	Intergenic	Intergenic	-29860	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
2.36572-3	chr1	7597310	7597809	+	0	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-233770	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
0.619809-9	chr2	38008074	38008573	+	0	NA	Intergenic	Intergenic	48531	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
20.0174-2	chr2	11220396	11220895	+	0	NA	Intergenic	Intergenic	51657	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
2.95849-2	chr14	55922418	55922917	+	0	NA	Intergenic	SVA_D|Other|Other	-15404	NM_199047	387332	Hs.528278	NM_199047	ENSG00000182521	TBPL2	TBP2|TRF3	TATA-box binding protein like 2	protein-coding
8.76148-11	chr2	11542771	11543270	+	0	NA	non-coding (NR_047499, exon 3 of 3)	non-coding (NR_047499, exon 3 of 3)	8913	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	ncRNA
0.920515-27	chr5	140027036	140027535	+	0	NA	promoter-TSS (NR_033697)	promoter-TSS (NR_033697)	85	NR_033697	4695	Hs.75914	NM_002488	ENSG00000131495	NDUFA2	B8|CD14|CIB8	NADH:ubiquinone oxidoreductase subunit A2	protein-coding
5.78396-3	chr13	96579893	96580392	+	0	NA	intron (NM_020121, intron 17 of 38)	SVA_B|Other|Other	125594	NM_020121	55757	Hs.193226	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
1.54902-17	chr21	44198878	44199377	+	0	NA	intron (NR_135517, intron 1 of 2)	SVA_E|Other|Other	977	NR_135517	101928311	Hs.570404	NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
2.79014-11	chr17	74010314	74010813	+	0	NA	exon (NM_001320747, exon 18 of 22)	exon (NM_001320747, exon 18 of 22)	12970	NM_001988	2125	Hs.500635	NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
0.496351-36	chr7	150574051	150574550	+	0	NA	Intergenic	Intergenic	24735	NM_001091	26	Hs.647097	NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO	amine oxidase, copper containing 1	protein-coding
0.680339-5	chr1	245303164	245303663	+	0	NA	Intergenic	Intergenic	-14874	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
1.14639-2	chr12	53447521	53448440	+	0	NA	intron (NM_170754, intron 6 of 28)	intron (NM_170754, intron 6 of 28)	242	NR_033854	283335	Hs.657060	NR_033854	ENSG00000257337	LOC283335	-	uncharacterized LOC283335	ncRNA
9.39302-16	chr14	104338072	104338571	+	0	NA	Intergenic	Intergenic	24263	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	ncRNA
1.70696-9	chr8	42128656	42129515	+	0	NA	promoter-TSS (NR_125823)	promoter-TSS (NR_125823)	265	NM_001556	3551	Hs.597664	NM_001556	ENSG00000104365	IKBKB	IKK-beta|IKK2|IKKB|IMD15|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
0.560111-2	chr6	89564836	89565335	+	0	NA	intron (NM_003800, intron 8 of 15)	L2|LINE|L2	108263	NM_001286428	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
22.1753-5	chr2	80679307	80679806	+	0	NA	intron (NM_001282597, intron 9 of 18)	intron (NM_001282597, intron 9 of 18)	139052	NM_001282599	1496	Hs.167368	NM_004389	ENSG00000066032	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin alpha 2	protein-coding
12.7901-5	chr18	69827888	69828387	+	0	NA	Intergenic	L1MEc|LINE|L1	-378675	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
0.118872-10	chr6	7238961	7239460	+	0	NA	intron (NM_001003698, intron 10 of 11)	intron (NM_001003698, intron 10 of 11)	74337	NM_001292008	6745	Hs.114033	NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
4.37707-9	chr4	154388318	154388817	+	0	NA	intron (NM_015196, intron 2 of 34)	CpG-20197	1069	NM_001131007	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
9.62574-28	chr10	43904216	43904715	+	0	NA	promoter-TSS (NM_001098205)	promoter-TSS (NM_001098205)	-133	NM_001098205	3185	Hs.808	NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
3.00162-5	chr17	79894968	79895467	+	0	NA	promoter-TSS (NM_001282279)	promoter-TSS (NM_001282279)	-13	NM_001330523	5831	Hs.163451	NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
0.0877392-49	chr6	169368251	169368750	+	0	NA	Intergenic	MamSINE1|SINE|tRNA	-4023	NR_136249	105378146	Hs.343631	NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
0.00434512-18	chrX	134048265	134048764	+	0	NA	intron (NM_019556, intron 1 of 5)	intron (NM_019556, intron 1 of 5)	860	NM_019556	56180	Hs.590789	NM_019556	ENSG00000101928	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
2.70026-8	chr2	186084704	186085203	+	0	NA	Intergenic	Intergenic	-53154	NR_136319	105373782	Hs.128285	NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
8.01343-15	chrX	8020447	8020946	+	0	NA	Intergenic	Intergenic	-74310	NR_030380	723779		NR_030380	ENSG00000207628	MIR651	MIRN651|hsa-mir-651|mir-651	microRNA 651	ncRNA
7.37549-10	chr5	142625504	142626003	+	0	NA	Intergenic	Intergenic	53688	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
3.04518-7	chr1	5220042	5220541	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-403840	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	mir-4417	microRNA 4417	ncRNA
4.14539-15	chr20	30105126	30105625	+	0	NA	intron (NM_178580, intron 1 of 12)	intron (NM_178580, intron 1 of 12)	3162	NM_030789	81502	Hs.373741	NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
18.5078-2	chr10	44101651	44102150	+	0	NA	promoter-TSS (NM_001318142)	promoter-TSS (NM_001318142)	45	NM_001318140	220992	Hs.147440	NM_145312	ENSG00000198298	ZNF485	-	zinc finger protein 485	protein-coding
3.55561-3	chr19	41196937	41197436	+	0	NA	promoter-TSS (NM_004756)	promoter-TSS (NM_004756)	-623	NM_004756	9253	Hs.326953	NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like, endocytic adaptor protein	protein-coding
14.9214	chr9	36867933	36868432	+	0	NA	intron (NM_001280549, intron 6 of 7)	intron (NM_001280549, intron 6 of 7)	-3877	NR_039766	100616278		NR_039766	ENSG00000264922	MIR4540	-	microRNA 4540	ncRNA
1.94499-7	chr4	106067208	106067707	+	0	NA	promoter-TSS (NM_001127208)	promoter-TSS (NM_001127208)	-385	NM_001127208	54790	Hs.367639	NM_017628	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
11.296-2	chr2	126189392	126189891	+	0	NA	Intergenic	Intergenic	-1223870	NM_016815	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
17.2816-3	chr6	5180806	5181305	+	0	NA	intron (NM_001164841, intron 2 of 3)	intron (NM_001164841, intron 2 of 3)	-32499	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
11.8575	chrX	9526508	9527007	+	0	NA	intron (NM_001139468, intron 3 of 17)	intron (NM_001139468, intron 3 of 17)	93556	NM_005647	6907	Hs.495656	NM_005647	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin beta like 1X-linked	protein-coding
0.070049-46	chr5	166475974	166476473	+	0	NA	Intergenic	Intergenic	119183	NR_134280	101927908		NR_134280	ENSG00000253469	LOC101927908	-	uncharacterized LOC101927908	ncRNA
4.13413-4	chr6	106958351	106958850	+	0	NA	Intergenic	CpG	-1130	NM_001624	202	Hs.724262	NM_001624	ENSG00000112297	AIM1	CRYBG1|ST4	absent in melanoma 1	protein-coding
10.5159	chr1	12237926	12238425	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	11115	NM_001066	7133	Hs.256278	NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
0.48177-18	chr14	100779783	100780282	+	0	NA	Intergenic	Intergenic	5836	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
4.14539-8	chr1	151573765	151574264	+	0	NA	Intergenic	SVA_E|Other|Other	-10648	NM_001330723	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
1.53663-27	chr14	105956036	105956535	+	0	NA	promoter-TSS (NM_001198983)	promoter-TSS (NM_001198983)	93	NM_001198983	283643	Hs.720306	NM_173608	ENSG00000185347	C14orf80	-	chromosome 14 open reading frame 80	protein-coding
0.186345-10	chr11	62446244	62446743	+	0	NA	promoter-TSS (NM_001286077)	promoter-TSS (NM_001286077)	96	NM_001286077	51035	Hs.351296	NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
0.310503	chr17	15902744	15903243	+	0	NA	promoter-TSS (NM_001042698)	promoter-TSS (NM_001042698)	13	NM_001042698	125150	Hs.593985	NM_001042697	ENSG00000214941	ZSWIM7	SWS1	zinc finger SWIM-type containing 7	protein-coding
2.79014-18	chr1	9466090	9466589	+	0	NA	Intergenic	Intergenic	22636	NR_104623	100506022	Hs.131775	NR_104622		LOC100506022	-	uncharacterized LOC100506022	ncRNA
1.80456-10	chr8	121714311	121714939	+	0	NA	intron (NM_021021, intron 1 of 6)	L2c|LINE|L2	-58868	NR_125419	101927543	Hs.371902	NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
1.58015-5	chr5	59996007	59996506	+	0	NA	promoter-TSS (NM_001145208)	promoter-TSS (NM_001145208)	-263	NM_001145208	55789	Hs.482233	NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
1.95861-2	chr2	11969133	11969632	+	0	NA	Intergenic	Intergenic	7730	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
1.11821-23	chr19	1269406	1269905	+	0	NA	intron (NM_001300829, intron 1 of 5)	CpG-12220	388	NR_023313	1153	Hs.618145	NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
8.01343-10	chr15	39464858	39465357	+	0	NA	Intergenic	Intergenic	-77763	NM_207445	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
1.58641-9	chr16	88518951	88519450	+	0	NA	promoter-TSS (NM_153813)	promoter-TSS (NM_153813)	-814	NM_153813	161882	Hs.632218	NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
4.68521-6	chr7	135400159	135400658	+	0	NA	intron (NM_012450, intron 2 of 15)	intron (NM_012450, intron 2 of 15)	12544	NM_001318192	26266	Hs.490241	NM_012450	ENSG00000164707	SLC13A4	NAS2|SUT-1|SUT1	solute carrier family 13 member 4	protein-coding
9.39302-18	chr2	135530861	135531360	+	0	NA	Intergenic	Intergenic	-54539	NM_030923	81615	Hs.369471	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
0.726296	chrY	1660165	1660664	+	0	NA	promoter-TSS (NM_005088).2	promoter-TSS (NM_005088).2	-72	NM_005088	8227	Hs.522572	NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
0.11441-23	chr3	183250496	183250995	+	0	NA	intron (NM_130446, intron 1 of 6)	intron (NM_130446, intron 1 of 6)	-15778	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
4.64706-8	chr2	38631001	38631500	+	0	NA	Intergenic	SVA_D|Other|Other	-25524	NM_001330462	64225	Hs.594950	NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
2.35077-3	chr20	56247149	56247648	+	0	NA	intron (NM_199171, intron 1 of 3)	CpG	18282	NM_001255976	56937	Hs.517155	NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
1.59894-22	chr4	155412239	155412738	+	0	NA	exon (NM_001142552, exon 1 of 8)	exon (NM_001142552, exon 1 of 8)	389	NM_001142552	54798	Hs.655664	NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
0.32452-4	chr22	19274765	19275264	+	0	NA	intron (NM_007098, intron 1 of 32)	intron (NM_007098, intron 1 of 32)	4225	NM_007098	8218	Hs.368266	NM_001835	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin heavy chain like 1	protein-coding
7.14443-11	chr5	127033839	127034338	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4993	NM_001317938	728586	Hs.582532	NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
8.26814-29	chr9	34654562	34655061	+	0	NA	intron (NR_052010, intron 1 of 12)	intron (NR_052010, intron 1 of 12)	917	NR_052010	3590	Hs.591088	NM_004512	ENSG00000137070	IL11RA	CRSDA	interleukin 11 receptor subunit alpha	protein-coding
1.26098-5	chr14	24568154	24568653	+	0	NA	exon (NM_001291556, exon 5 of 10)	exon (NM_001291556, exon 5 of 10)	4913	NM_001308054	5106	Hs.75812	NM_004563	ENSG00000100889	PCK2	PEPCK|PEPCK-M|PEPCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein-coding
0.486625-14	chr6	41303526	41304025	+	0	NA	intron (NM_004828, intron 1 of 4)	intron (NM_004828, intron 1 of 4)	247	NM_001199509	9436	Hs.194721	NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
0.443122-12	chr8	28181705	28182204	+	0	NA	intron (NM_006228, intron 1 of 3)	intron (NM_006228, intron 1 of 3)	7305	NM_006228	5368	Hs.88218	NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
0.710923-5	chr4	153945193	153945692	+	0	NA	Intergenic	Intergenic	81307	NM_033393	85462	Hs.132629	NM_033393	ENSG00000137460	FHDC1	-	FH2 domain containing 1	protein-coding
0.268721-12	chr21	30256822	30257321	+	0	NA	intron (NM_182749, intron 1 of 4)	intron (NM_182749, intron 1 of 4)	624	NM_182749	29104	Hs.163846	NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
0.101054-4	chr21	34602858	34603357	+	0	NA	intron (NM_207585, intron 1 of 8)	CpG	907	NM_207584	3455	Hs.708195	NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
1.21478-15	chr7	43622946	43623445	+	0	NA	intron (NM_004760, intron 1 of 6)	CpG	503	NM_004760	9263	Hs.709489	NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
8.12479-8	chr5	136334174	136334673	+	0	NA	intron (NM_004598, intron 6 of 10)	intron (NM_004598, intron 6 of 10)	-129463	NR_134246	105379192	Hs.124611	NR_134246		LOC105379192	-	uncharacterized LOC105379192	ncRNA
6.38272-10	chr17	21271735	21272234	+	0	NA	Intergenic	Intergenic	-7715	NM_021012	3768	Hs.200629	NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium voltage-gated channel subfamily J member 12	protein-coding
0.48177-4	chr17	38269323	38269822	+	0	NA	Intergenic	Intergenic	-9218	NM_001012241	339287	Hs.532786	NM_001012241	ENSG00000188895	MSL1	MSL-1|hMSL1	male specific lethal 1 homolog	protein-coding
11.2552-2	chr21	45563172	45563671	+	0	NA	intron (NR_135220, intron 5 of 5)	intron (NR_135220, intron 5 of 5)	9927	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
3.77786-8	chr13	98796994	98797493	+	0	NA	intron (NM_005766, intron 1 of 26)	intron (NM_005766, intron 1 of 26)	1891	NM_005766	10160	Hs.403917	NM_005766	ENSG00000152767	FARP1	CDEP|FARP1-IT1|PLEKHC2|PPP1R75	FERM, ARH/RhoGEF and pleckstrin domain protein 1	protein-coding
3.22393-28	chrY	3650488	3650987	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	203611	NM_139214	90655	Hs.112148	NM_139214	ENSG00000176679	TGIF2LY	TGIFLY	TGFB induced factor homeobox 2 like, Y-linked	protein-coding
2.91579	chr7	12443789	12444288	+	0	NA	promoter-TSS (NR_144534)	promoter-TSS (NR_144534)	-471	NM_001346973	221806	Hs.669526	NM_001135924	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding
15.4821	chr2	138837449	138837948	+	0	NA	Intergenic	MER21B|LTR|ERVL	-21756	NR_135526	105373635		NR_135526	ENSG00000224231	LINC01832	-	long intergenic non-protein coding RNA 1832	ncRNA
1.66216	chr17	78009603	78010102	+	0	NA	promoter-TSS (NM_019020)	promoter-TSS (NM_019020)	-195	NM_019020	125058	Hs.369819	NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
3.34419-7	chr10	123659984	123660483	+	0	NA	intron (NR_110006, intron 4 of 9)	intron (NR_110006, intron 4 of 9)	27345	NM_007041	11101	Hs.632080	NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
12.7654-4	chr7	140103641	140104140	+	0	NA	promoter-TSS (NM_001008749)	promoter-TSS (NM_001008749)	47	NM_001008749	401409	Hs.583545	NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
15.3611	chr1	205287687	205288186	+	0	NA	intron (NM_030952, intron 1 of 6)	intron (NM_030952, intron 1 of 6)	2983	NM_030952	81788	Hs.497512	NM_030952	ENSG00000163545	NUAK2	SNARK	NUAK family kinase 2	protein-coding
6.51695-8	chr2	27115745	27116244	+	0	NA	intron (NM_001253724, intron 1 of 12)	intron (NM_001253724, intron 1 of 12)	44702	NM_001253724	56896	Hs.299315	NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase like 5	protein-coding
2.51037-7	chr7	126123981	126124480	+	0	NA	intron (NM_001127323, intron 9 of 10)	intron (NM_001127323, intron 9 of 10)	574008	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
0.376307-48	chr2	187713224	187713723	+	0	NA	intron (NM_182521, intron 1 of 8)	intron (NM_182521, intron 1 of 8)	424	NM_182521	151112	Hs.375054	NM_182521	ENSG00000163012	ZSWIM2	MEX|ZZZ2	zinc finger SWIM-type containing 2	protein-coding
1.51195-17	chr2	70313753	70314252	+	0	NA	promoter-TSS (NM_006196)	promoter-TSS (NM_006196)	145	NR_033872	400960	Hs.683864	NR_033872	ENSG00000179818	PCBP1-AS1	-	PCBP1 antisense RNA 1	ncRNA
0.123337-16	chr11	34074789	34075288	+	0	NA	intron (NM_005898, intron 2 of 18)	intron (NM_005898, intron 2 of 18)	1808	NM_005898	4076	Hs.471818	NM_005898	ENSG00000135387	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
1.29596-27	chr3	126928090	126928908	+	0	NA	Intergenic	Intergenic	16525	NM_001007534	285311	Hs.591284	NM_001007534		C3orf56	-	chromosome 3 open reading frame 56	protein-coding
0.0261362-53	chr4	164471386	164471885	+	0	NA	intron (NM_001166373, intron 6 of 7)	intron (NM_001166373, intron 6 of 7)	55962	NM_018352	55319	Hs.267446	NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
1.33122-11	chr1	225803549	225804048	+	0	NA	intron (NM_018212, intron 1 of 13)	SVA_B|Other|Other	37047	NM_001008493	55740	Hs.497893	NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding
0.8302-11	chr7	8953116	8953615	+	0	NA	Intergenic	Intergenic	479780	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
0.467237-12	chr5	133706549	133707048	+	0	NA	promoter-TSS (NM_001300853)	promoter-TSS (NM_001300853)	-60	NM_001300853	51265	Hs.719926	NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin dependent kinase like 3	protein-coding
7.61954-22	chr11	492698	493197	+	0	NA	Intergenic	Intergenic	13874	NM_002939	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
0.570004-6	chr11	29568054	29568553	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	435637	NR_132652	106456574	Hs.128812	NR_132652	ENSG00000261340	LINC01616	n341006	long intergenic non-protein coding RNA 1616	ncRNA
0.0392635-4	chr16	3073869	3074368	+	0	NA	promoter-TSS (NM_024339)	promoter-TSS (NM_024339)	98	NM_001347704	79228	Hs.412304	NM_024339	ENSG00000131652	THOC6	WDR58|fSAP35	THO complex 6	protein-coding
1.45694-22	chr1	36981882	36982381	+	0	NA	Intergenic	Intergenic	-33216	NM_156039	1441	Hs.524517	NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
0.589858-23	chr17	71159110	71159609	+	0	NA	Intergenic	Intergenic	-1801	NM_001050	6752	Hs.514451	NM_001050	ENSG00000180616	SSTR2	-	somatostatin receptor 2	protein-coding
1.83096-10	chr1	179261404	179261903	+	0	NA	Intergenic	Intergenic	-1196	NR_045530	6646	Hs.445588	NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
0.287242-10	chr11	36167080	36167579	+	0	NA	intron (NM_174902, intron 4 of 5)	SVA_D|Other|Other	-67878	NR_135064	101928510	Hs.675857	NR_135064		LOC101928510	-	uncharacterized LOC101928510	ncRNA
14.045-2	chr14	30739803	30740302	+	0	NA	Intergenic	Intergenic	-288277	NM_017769	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
8.96196-2	chr14	22958075	22958574	+	0	NA	Intergenic	Intergenic	99819	NM_001344	1603	Hs.82890	NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
5.78396-8	chr11	118955448	118955947	+	0	NA	5' UTR (NM_000190, exon 1 of 14)	5' UTR (NM_000190, exon 1 of 14)	110	NM_001258208	3145	Hs.82609	NM_000190	ENSG00000256269	HMBS	PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
25.2724	chr2	174888155	174888654	+	0	NA	Intergenic	Intergenic	-1604	NR_136175	100128905	Hs.456944	NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
0.254883-50	chr7	114562792	114563291	+	0	NA	exon (NM_199072, exon 2 of 5)	exon (NM_199072, exon 2 of 5)	832	NM_001166346	29969	Hs.741413	NM_199072	ENSG00000135272	MDFIC	HIC	MyoD family inhibitor domain containing	protein-coding
0.0744648-5	chr6	132805211	132805710	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	28474	NM_001326578	8417	Hs.593148	NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
26.2893	chr22	39752383	39752882	+	0	NA	intron (NM_145731, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	6678	NM_004711	9145	Hs.216226	NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
2.80669-3	chr21	44876428	44876927	+	0	NA	Intergenic	CpG	6773	NR_026960	284836	Hs.146127	NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
0.979971-30	chr12	99288621	99289120	+	0	NA	promoter-TSS (NM_001204080)	promoter-TSS (NM_001204080)	-196	NM_001204080	56899	Hs.506458	NM_020140	ENSG00000185046	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
10.2919-2	chr6	46983904	46984403	+	0	NA	intron (NM_153840, intron 8 of 14)	intron (NM_153840, intron 8 of 14)	25946	NM_153840	266977	Hs.733762	NM_025048	ENSG00000153292	ADGRF1	GPR110|KPG_012|PGR19|hGPCR36	adhesion G protein-coupled receptor F1	protein-coding
2.13249-18	chr2	233190621	233191120	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-52374	NM_001632	250	Hs.284255	NM_001632	ENSG00000163283	ALPP	ALP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
8.35647-6	chr8	11300106	11300605	+	0	NA	intron (NM_053279, intron 2 of 2)	intron (NM_053279, intron 2 of 2)	23921	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	family with sequence similarity 167 member A	protein-coding
0.94744-15	chr9	34554971	34555470	+	0	NA	intron (NM_001842, intron 6 of 8)	intron (NM_001842, intron 6 of 8)	-12790	NR_024369	415056	Hs.734229	NR_024369		CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
1.80456-12	chr3	9344092	9344591	+	0	NA	Intergenic	Intergenic	-52972	NM_001033117	9901	Hs.654743	NM_014850	ENSG00000196220	SRGAP3	ARHGAP14|MEGAP|SRGAP2|WRP	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
13.6552-2	chr15	92972732	92973231	+	0	NA	intron (NM_001330416, intron 1 of 4)	intron (NM_001330416, intron 1 of 4)	35841	NM_006011	8128	Hs.302341	NM_006011	ENSG00000140557	ST8SIA2	HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
0.599818-29	chr8	124553277	124553776	+	0	NA	promoter-TSS (NM_058229)	promoter-TSS (NM_058229)	-33	NM_001242463	114907	Hs.403933	NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
27.67	chr13	91744739	91745238	+	0	NA	Intergenic	LTR79|LTR|ERVL	-1295	NR_104057	101930747	Hs.112745	NR_104057		LINC00380	-	long intergenic non-protein coding RNA 380	ncRNA
5.98599-3	chr4	77839562	77840061	+	0	NA	Intergenic	SVA_E|Other|Other	-20809	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
0.338583-23	chr9	22457347	22457846	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	10756	NM_022160	63951	Hs.371976	NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
13.0103-6	chr4	65748039	65748538	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	121930	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
1.55523	chr21	34143872	34144371	+	0	NA	promoter-TSS (NM_013329)	promoter-TSS (NM_013329)	48	NM_013329	94104	Hs.644004	NM_013329	ENSG00000159086	PAXBP1	BM020|C21orf66|FSAP105|GCFC|GCFC1	PAX3 and PAX7 binding protein 1	protein-coding
1.18045	chr13	20702663	20703162	+	0	NA	Intergenic	CpG	26072	NR_126380	104355137	Hs.578016	NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
3.17855-7	chr2	163175198	163175697	+	0	NA	promoter-TSS (NM_022168)	promoter-TSS (NM_022168)	-45	NM_001330267	25801	Hs.377894	NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
7.87812-8	chr1	37939859	37940358	+	0	NA	promoter-TSS (NR_038842)	promoter-TSS (NR_038842)	-11	NM_001323550	80149	Hs.656294	NM_025079	ENSG00000163874	ZC3H12A	MCPIP|MCPIP-1|MCPIP1|Reg1|dJ423B22.1	zinc finger CCCH-type containing 12A	protein-coding
3.36299-16	chr11	46403361	46403860	+	0	NA	exon (NM_002391, exon 2 of 5)	exon (NM_002391, exon 2 of 5)	349	NM_001270551	4192	Hs.82045	NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine (neurite growth-promoting factor 2)	protein-coding
28.9963	chr2	137062950	137063449	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-187474	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
1.06793-5	chr13	111549347	111549846	+	0	NA	intron (NM_001286721, intron 3 of 4)	AluJr4|SINE|Alu	17858	NM_001286721	55608	Hs.525163	NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
0.599818-22	chr18	14459738	14460237	+	0	NA	Intergenic	Intergenic	38718	NR_024076	440224	Hs.721675	NR_024076	ENSG00000265766	CXADRP3	-	coxsackie virus and adenovirus receptor pseudogene 3	pseudo
4.34152	chr4	151875497	151875996	+	0	NA	intron (NM_006726, intron 2 of 57)	SVA_B|Other|Other	60673	NM_001199282	987	Hs.480938	NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	LPS responsive beige-like anchor protein	protein-coding
0.254883-22	chr6	106517261	106517760	+	0	NA	Intergenic	Intergenic	-16685	NM_001198	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
0.604807-6	chr19	14477273	14477772	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-2720	NR_134908	105372288	Hs.628463	NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
0.731433-3	chr19	17799230	17799729	+	0	NA	promoter-TSS (NM_001080421)	promoter-TSS (NM_001080421)	-471	NM_001080421	23025	Hs.164502	NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
0.888424-6	chr7	151409059	151409558	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	24092	NM_001304527	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
23.1336-3	chr11	123667494	123667993	+	0	NA	Intergenic	LTR76|LTR|ERV1	9314	NM_001005325	390261	Hs.557924	NM_001005325	ENSG00000196099	OR6M1	OR11-271	olfactory receptor family 6 subfamily M member 1	protein-coding
13.279	chr4	157515786	157516285	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	376511	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
17.1444-2	chr14	95990278	95990777	+	0	NA	Intergenic	Intergenic	9439	NR_003002	677768	Hs.448753	NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
0.296531-11	chr3	133969516	133970015	+	0	NA	promoter-TSS (NM_002958)	promoter-TSS (NM_002958)	-179	NM_001005861	6259	Hs.654562	NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
1.18045-19	chr6	126101742	126102241	+	0	NA	promoter-TSS (NM_001199619)	promoter-TSS (NM_001199619)	-316	NM_001199619	135112	Hs.171426	NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
1.07905-11	chr11	60897212	60897711	+	0	NA	TTS (NM_017966)	TTS (NM_017966)	27531	NM_014207	921	Hs.58685	NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
9.74694-9	chr12	109960704	109961203	+	0	NA	intron (NM_183415, intron 21 of 27)	intron (NM_183415, intron 21 of 27)	45525	NM_001270450	89910	Hs.374067	NM_130466	ENSG00000151148	UBE3B	BPIDS|KOS	ubiquitin protein ligase E3B	protein-coding
6.30784-5	chr1	238226631	238227130	+	0	NA	Intergenic	Intergenic	-172658	NM_021186	57829	Hs.136241	NM_021186	ENSG00000116996	ZP4	ZBP|ZP1|ZPB|Zp-4	zona pellucida glycoprotein 4	protein-coding
0.942041-11	chr18	33336385	33336884	+	0	NA	Intergenic	Intergenic	102101	NM_020474	2589	Hs.514806	NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
0.655015-12	chr6	25370026	25370956	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	90835	NM_001173977	55604	Hs.649550	NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
2.38072-15	chr3	121740745	121741244	+	0	NA	5' UTR (NM_175924, exon 1 of 7)	5' UTR (NM_175924, exon 1 of 7)	133	NM_001199800	286676	Hs.98484	NM_175924	ENSG00000145103	ILDR1	DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta	immunoglobulin like domain containing receptor 1	protein-coding
1.91114-14	chr5	76382449	76382948	+	0	NA	promoter-TSS (NR_024398)	promoter-TSS (NR_024398)	75	NR_024398	728723	Hs.161338	NR_024398		ZBED3-AS1	-	ZBED3 antisense RNA 1	ncRNA
1.59894-4	chrX	153200005	153200504	+	0	NA	TTS (NM_002910)	TTS (NM_002910)	353	NM_001256119	8260	Hs.433291	NM_003491	ENSG00000102030	NAA10	ARD1|ARD1A|ARD1P|DXS707|MCOPS1|NATD|OGDNS|TE2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding
1.50581-20	chr14	22025729	22026228	+	0	NA	Intergenic	Intergenic	12897	NM_001005465	26533	Hs.554581	NM_001005465	ENSG00000169208	OR10G3	OR14-40	olfactory receptor family 10 subfamily G member 3	protein-coding
5.39102-8	chr14	20737071	20737570	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	26369	NM_001004479	390442	Hs.553767	NM_001004479	ENSG00000176198	OR11H4	OR14-36	olfactory receptor family 11 subfamily H member 4	protein-coding
0.472076-29	chr15	101834774	101835273	+	0	NA	intron (NR_135508, intron 1 of 7)	CpG	464	NM_003090	6627	Hs.528763	NM_003090	ENSG00000131876	SNRPA1	Lea1	small nuclear ribonucleoprotein polypeptide A'	protein-coding
0.385789-14	chr2	220159431	220159930	+	0	NA	promoter-TSS (NR_029688)	promoter-TSS (NR_029688)	-758	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
0.0348833-8	chr15	35046885	35047384	+	0	NA	promoter-TSS (NR_120329)	promoter-TSS (NR_120329)	-151	NR_120329	101928174	Hs.680670	NR_120329	ENSG00000250007	LOC101928174	-	uncharacterized LOC101928174	ncRNA
5.85027-17	chr10	72977826	72978325	+	0	NA	promoter-TSS (NR_038453)	promoter-TSS (NR_038453)	-90	NR_038453	728978	Hs.646725	NR_038453	ENSG00000237512	UNC5B-AS1	-	UNC5B antisense RNA 1	ncRNA
1.54282-11	chr2	221814020	221814519	+	0	NA	Intergenic	Intergenic	622809	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
8.01343-4	chr5	134813134	134813633	+	0	NA	Intergenic	Intergenic	-25294	NM_001099221	497189	Hs.552091	NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
8.8941-16	chr16	1428893	1429884	+	0	NA	intron (NM_001193388, intron 10 of 14)	CpG	296	NM_001276414	64718	Hs.643536	NM_023076	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unkempt family like zinc finger	protein-coding
4.7237-4	chr7	151516809	151517308	+	0	NA	intron (NM_016203, intron 1 of 15)	MIRc|SINE|MIR	-5101	NM_001040633	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
4.97573-4	chr4	84158674	84159173	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	47144	NM_015697	27235	Hs.144304	NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
6.96804-11	chr4	76861096	76861595	+	0	NA	intron (NM_014435, intron 1 of 10)	CpG-19891	821	NM_001042402	27163	Hs.437365	NM_014435	ENSG00000138744	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
1.80456-2	chr2	27434546	27435045	+	0	NA	promoter-TSS (NM_016085)	promoter-TSS (NM_016085)	-104	NM_080592	51374	Hs.9527	NM_016085	ENSG00000138085	ATRAID	APR--3|APR-3|APR3|C2orf28|HSPC013|PRO240|p18	all-trans retinoic acid induced differentiation factor	protein-coding
10.1368-3	chr2	12145917	12146416	+	0	NA	Intergenic	Intergenic	-1076	NR_110196	100506457	Hs.197824	NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
1.14639	chr6	167693461	167693960	+	0	NA	Intergenic	Intergenic	-11093	NM_018974	54346	Hs.567508	NM_018974	ENSG00000112494	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
0.851282-19	chr7	51276398	51276897	+	0	NA	intron (NM_001287438, intron 2 of 7)	SVA_D|Other|Other	107911	NM_001346442	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
0.268721-37	chr13	103021577	103022076	+	0	NA	intron (NR_125912, intron 1 of 1)	intron (NR_125912, intron 1 of 1)	1946	NR_125912	100874081	Hs.569296	NR_125912	ENSG00000234445	FGF14-AS1	-	FGF14 antisense RNA 1	ncRNA
7.64472-13	chr7	45280752	45281251	+	0	NA	Intergenic	Intergenic	83634	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
0.400052-52	chr5	145214686	145215185	+	0	NA	promoter-TSS (NM_138492)	promoter-TSS (NM_138492)	-3	NM_182960	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
0.123337-29	chr7	64725474	64725973	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-112989	NM_001287534	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
1.6813-5	chr11	919170	919669	+	0	NA	Intergenic	Intergenic	-4361	NM_001142675	66005	Hs.144468	NM_023947	ENSG00000177830	CHID1	GL008|SI-CLP|SICLP	chitinase domain containing 1	protein-coding
3.78824	chr9	135116538	135117037	+	0	NA	intron (NM_032536, intron 7 of 7)	CpG-27197	79453	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
4.67246-12	chr14	34825359	34825858	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	105860	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
2.04815-7	chr9	33374801	33375300	+	0	NA	Intergenic	Intergenic	27630	NM_001318157	364	Hs.455323	NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
0.168249-25	chr5	7897015	7897514	+	0	NA	exon (NM_002454, exon 14 of 15)	exon (NM_002454, exon 14 of 15)	28047	NM_024010	4552	Hs.481551	NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
0.680339-41	chr9	129089295	129089794	+	0	NA	intron (NM_033446, intron 1 of 9)	intron (NM_033446, intron 1 of 9)	421	NM_001011703	89853	Hs.162659	NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
1.52427-24	chr1	77043133	77043632	+	0	NA	TTS (NM_001160011)	TTS (NM_001160011)	-289711	NM_001320273	81849	Hs.149201	NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
2.67606-3	chr10	70231415	70231914	+	0	NA	promoter-TSS (NM_001080449)	promoter-TSS (NM_001080449)	66	NM_001080449	1763	Hs.532446	NM_001080449	ENSG00000138346	DNA2	DNA2L|hDNA2	DNA replication helicase/nuclease 2	protein-coding
0.310503-6	chr13	74710407	74710906	+	0	NA	Intergenic	Intergenic	-2590	NM_007249	11278	Hs.373857	NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	Kruppel like factor 12	protein-coding
0.366845-20	chr19	1652456	1652955	+	0	NA	promoter-TSS (NM_003200)	promoter-TSS (NM_003200)	-377	NM_003200	6929	Hs.371282	NM_003200	ENSG00000071564	TCF3	AGM8|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
16.7162-2	chr2	160177683	160178182	+	0	NA	intron (NM_001329857, intron 36 of 36)	L1MA2|LINE|L1	-34622	NM_001307994	151525	Hs.20848	NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
2.41845-3	chr4	174089147	174089646	+	0	NA	promoter-TSS (NM_017423)	promoter-TSS (NM_017423)	-508	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
3.46787-2	chr12	25403868	25404367	+	0	NA	promoter-TSS (NM_033360)	promoter-TSS (NM_033360)	-252	NM_033360	3845	Hs.505033	NM_004985	ENSG00000133703	KRAS	C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
0.310503-37	chr19	2290900	2291399	+	0	NA	exon (NM_001101391, exon 2 of 2)	exon (NM_001101391, exon 2 of 2)	-8968	NM_198532	374872	Hs.511803	NM_198532	ENSG00000188305	C19orf35	-	chromosome 19 open reading frame 35	protein-coding
2.89883-17	chrX	8158958	8159457	+	0	NA	Intergenic	Intergenic	-19899	NM_016378	51480	Hs.279737	NM_016378	ENSG00000177504	VCX2	VCX-2r|VCX2R|VCXB	variable charge, X-linked 2	protein-coding
2.45652-7	chr14	32028652	32029151	+	0	NA	Intergenic	SVA_B|Other|Other	-1690	NM_025152	80224	Hs.288981	NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|huInd1	nucleotide binding protein like	protein-coding
8.79426	chr14	90166979	90167478	+	0	NA	Intergenic	Intergenic	-81734	NM_001085471	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
1.16907-10	chr5	19930449	19930948	+	0	NA	intron (NM_001291956, intron 4 of 14)	intron (NM_001291956, intron 4 of 14)	-44317	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
7.87812-17	chr21	43665911	43666410	+	0	NA	intron (NM_207174, intron 2 of 14)	intron (NM_207174, intron 2 of 14)	26152	NM_207174	9619	Hs.124649	NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
10.8249	chr13	39142701	39143200	+	0	NA	intron (NR_046999, intron 1 of 3)	L1PA16|LINE|L1	1089	NR_046999	100874147	Hs.555371	NR_046999		LINC00366	-	long intergenic non-protein coding RNA 366	ncRNA
1.63676-7	chr19	3275341	3275840	+	0	NA	intron (NM_021938, intron 3 of 12)	intron (NM_021938, intron 3 of 12)	50107	NR_033342	60680	Hs.655747	NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP, Elav-like family member 5	protein-coding
1.44481-7	chr2	42381278	42381777	+	0	NA	intron (NR_110584, intron 1 of 3)	intron (NR_110584, intron 1 of 3)	-14951	NM_019063	27436	Hs.713173	NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
8.32683-3	chr17	62278132	62278631	+	0	NA	intron (NM_018469, intron 2 of 11)	intron (NM_018469, intron 2 of 11)	29735	NM_001288733	55852	Hs.175414	NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
6.8403-6	chr2	209271662	209272161	+	0	NA	intron (NM_005048, intron 1 of 12)	CpG	356	NM_005048	5746	Hs.570296	NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
0.94744-5	chr12	85306377	85306876	+	0	NA	promoter-TSS (NM_018057)	promoter-TSS (NM_018057)	-18	NM_001146335	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
3.37242-3	chr5	36606483	36606982	+	0	NA	5' UTR (NM_004172, exon 1 of 10)	5' UTR (NM_004172, exon 1 of 10)	275	NM_001289940	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
0.0392635-44	chr20	48599125	48599624	+	0	NA	promoter-TSS (NM_005985)	promoter-TSS (NM_005985)	-139	NM_005985	6615	Hs.48029	NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
3.58526-4	chr4	183961261	183961760	+	0	NA	TTS (NR_003612)	TTS (NR_003612)	2692	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	family with sequence similarity 92, member A3	pseudo
1.03474-6	chr5	60241084	60241583	+	0	NA	promoter-TSS (NM_000082)	promoter-TSS (NM_000082)	377	NM_174889	91942	Hs.591757	NM_174889	ENSG00000164182	NDUFAF2	B17.2L|MMTN|NDUFA12L|mimitin	NADH:ubiquinone oxidoreductase complex assembly factor 2	protein-coding
15.1004	chr11	113420356	113420855	+	0	NA	Intergenic	Intergenic	-74604	NM_016574	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
6.16185-17	chrX	9506711	9507210	+	0	NA	intron (NM_001139468, intron 3 of 17)	intron (NM_001139468, intron 3 of 17)	73759	NM_005647	6907	Hs.495656	NM_005647	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin beta like 1X-linked	protein-coding
0.150229-11	chr2	185463267	185463766	+	0	NA	5' UTR (NM_194250, exon 1 of 4)	5' UTR (NM_194250, exon 1 of 4)	423	NM_194250	91752	Hs.159528	NM_194250	ENSG00000170396	ZNF804A	C2orf10	zinc finger protein 804A	protein-coding
0.376307-17	chr7	99933593	99934092	+	0	NA	promoter-TSS (NR_003613)	promoter-TSS (NR_003613)	88	NR_003613	5379	Hs.634244	NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
0.376307-39	chr3	57094339	57094838	+	0	NA	5' UTR (NM_181727, exon 1 of 2)	5' UTR (NM_181727, exon 1 of 2)	119	NM_181727	353324	Hs.129794	NM_181727	ENSG00000186451	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
0.9691-11	chr19	883523	884022	+	0	NA	intron (NM_005481, intron 6 of 15)	intron (NM_005481, intron 6 of 15)	9446	NM_005481	10025	Hs.365207	NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
4.52225-7	chr7	122161036	122161535	+	0	NA	intron (NM_001009571, intron 8 of 27)	intron (NM_001009571, intron 8 of 27)	177923	NM_139175	168433	Hs.126730	NM_139175	ENSG00000188050	RNF133	-	ring finger protein 133	protein-coding
3.40084-15	chr6	129806710	129807209	+	0	NA	intron (NM_000426, intron 55 of 64)	intron (NM_000426, intron 55 of 64)	224411	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
23.9686	chr14	39974232	39974731	+	0	NA	Intergenic	L1M2c|LINE|L1	-72777	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
1.88425-9	chr2	206549680	206550179	+	0	NA	intron (NM_018534, intron 1 of 15)	CpG	2705	NM_018534	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
2.89883-23	chr15	64342664	64343163	+	0	NA	Intergenic	Intergenic	-4392	NM_014326	23604	Hs.237886	NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
5.55955-2	chr14	101159509	101160008	+	0	NA	Intergenic	Intergenic	-33444	NM_001317172	8788	Hs.116631	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta like non-canonical Notch ligand 1	protein-coding
1.89767	chr1	208976771	208977270	+	0	NA	Intergenic	Intergenic	-521781	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
0.241089-12	chr3	14328464	14328963	+	0	NA	Intergenic	Intergenic	65355	NR_110135	101927565	Hs.306905	NR_110135	ENSG00000251576	LINC01267	-	long intergenic non-protein coding RNA 1267	ncRNA
4.15669-2	chr5	11273243	11273742	+	0	NA	intron (NR_109988, intron 7 of 21)	intron (NR_109988, intron 7 of 21)	315537	NM_001288715	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
0.79355-31	chr7	44365465	44365964	+	0	NA	promoter-TSS (NM_172083)	promoter-TSS (NM_172083)	-484	NM_172080	816	Hs.351887	NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB	calcium/calmodulin dependent protein kinase II beta	protein-coding
1.52427-10	chr3	9289932	9290431	+	0	NA	intron (NM_001033117, intron 1 of 21)	intron (NM_001033117, intron 1 of 21)	1188	NM_014850	9901	Hs.654743	NM_014850	ENSG00000196220	SRGAP3	ARHGAP14|MEGAP|SRGAP2|WRP	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
5.51294-4	chr6	113638876	113639375	+	0	NA	Intergenic	Intergenic	332152	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA
14.2597-2	chr1	167055196	167055695	+	0	NA	intron (NM_005814, intron 1 of 6)	intron (NM_005814, intron 1 of 6)	4423	NM_005814	10223	Hs.651244	NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
1.52427-8	chr6	138327993	138328492	+	0	NA	Intergenic	Intergenic	100418	NM_022121	64065	Hs.201446	NM_022121	ENSG00000112378	PERP	KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1	PERP, TP53 apoptosis effector	protein-coding
18.7615	chr8	105381271	105381770	+	0	NA	Intergenic	Intergenic	29496	NM_030788	81501	Hs.652230	NM_030788	ENSG00000164935	DCSTAMP	FIND|TM7SF4|hDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding
0.282604-8	chr5	124745605	124746104	+	0	NA	Intergenic	Intergenic	-83100	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
0.366845-12	chr9	130738719	130739218	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	3844	NM_001035254	399665	Hs.535972	NM_203305	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102 member A	protein-coding
10.5799	chr2	10348292	10349233	+	0	NA	intron (NM_182626, intron 3 of 3)	intron (NM_182626, intron 3 of 3)	-15965	NR_036222	100422929		NR_036222	ENSG00000265418	MIR4261	-	microRNA 4261	ncRNA
3.68556-8	chr11	65657807	65658655	+	0	NA	5' UTR (NM_006848, exon 1 of 1)	5' UTR (NM_006848, exon 1 of 1)	356	NM_006848	11007	Hs.66713	NM_006848	ENSG00000175602	CCDC85B	DIPA	coiled-coil domain containing 85B	protein-coding
0.599818-4	chr2	28578945	28579444	+	0	NA	Intergenic	Intergenic	-36585	NM_005253	2355	Hs.220971	NM_005253	ENSG00000075426	FOSL2	FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
2.23299-7	chr12	18583287	18583786	+	0	NA	intron (NM_004570, intron 17 of 31)	intron (NM_004570, intron 17 of 31)	169062	NM_004570	5288	Hs.22500	NM_004570	ENSG00000139144	PIK3C2G	PI3K-C2-gamma|PI3K-C2GAMMA	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding
1.45087-19	chr14	35591213	35591712	+	0	NA	promoter-TSS (NM_001256678)	promoter-TSS (NM_001256678)	-65	NM_014672	9692	Hs.458487	NM_014672	ENSG00000100890	KIAA0391	MRPP3|PRORP	KIAA0391	protein-coding
0.510982-13	chrX	57163463	57163962	+	0	NA	5' UTR (NM_019003, exon 1 of 2)	5' UTR (NM_019003, exon 1 of 2)	346	NM_019003	54466	Hs.460725	NM_019003	ENSG00000147059	SPIN2A	DXF34|SPIN2|TDRD25|dJ323P24.1	spindlin family member 2A	protein-coding
10.575	chr18	77711549	77712048	+	0	NA	promoter-TSS (NM_025078)	promoter-TSS (NM_025078)	-145	NM_025078	80148	Hs.288284	NM_025078	ENSG00000122490	PQLC1	-	PQ loop repeat containing 1	protein-coding
1.50581-6	chr8	12293010	12293509	+	0	NA	intron (NM_001137610, intron 1 of 7)	intron (NM_001137610, intron 1 of 7)	593	NM_001137610	653333	Hs.458413	NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
2.91579-3	chr5	18394205	18394704	+	0	NA	Intergenic	Intergenic	587071	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
20.8938-2	chr7	112645739	112646238	+	0	NA	Intergenic	L1PA15|LINE|L1	-10290	NR_110162	101928036	Hs.120006	NR_110162	ENSG00000234520	HRAT17	-	heart tissue-associated transcript 17	ncRNA
0.154727-16	chr18	59001181	59001680	+	0	NA	intron (NM_031891, intron 1 of 11)	CpG	615	NM_031891	28316	Hs.671510	NM_031891	ENSG00000101542	CDH20	CDH7L3|Cdh7	cadherin 20	protein-coding
1.84422-3	chr1	9488815	9489314	+	0	NA	promoter-TSS (NR_104622)	promoter-TSS (NR_104622)	-9	NR_104622	100506022	Hs.131775	NR_104622		LOC100506022	-	uncharacterized LOC100506022	ncRNA
0.428718-8	chr8	112976386	112976885	+	0	NA	Intergenic	L1P4a|LINE|L1	-679087	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	ncRNA
18.3268-3	chr18	65085124	65085623	+	0	NA	Intergenic	Intergenic	-98410	NR_033921	643542	Hs.652901	NR_033921	ENSG00000265533	LOC643542	-	uncharacterized LOC643542	ncRNA
0.2365-26	chr3	81351135	81351634	+	0	NA	Intergenic	Intergenic	308365	NR_132411	728290	Hs.563132	NR_132411	ENSG00000243694	LINC02027	-	long intergenic non-protein coding RNA 2027	ncRNA
0.867161-11	chrX	106972843	106973342	+	0	NA	intron (NM_001318470, intron 2 of 3)	intron (NM_001318470, intron 2 of 3)	-12801	NM_004089	1831	Hs.522074	NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
0.0348833-3	chr16	30583438	30583937	+	0	NA	promoter-TSS (NM_001024683)	promoter-TSS (NM_001024683)	41	NM_001024683	146542	Hs.301463	NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
0.438316-22	chrX	129464624	129465123	+	0	NA	Intergenic	Intergenic	-8989	NR_104107	9016	Hs.194686	NM_003951	ENSG00000102078	SLC25A14	BMCP1|UCP5	solute carrier family 25 member 14	protein-coding
16.5561-6	chr1	16860985	16861484	+	0	NA	non-coding (NR_135764, exon 1 of 2)	non-coding (NR_135764, exon 1 of 2)	913	NR_135764	100132147	Hs.645945	NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
19.8297-2	chr6	91430060	91430559	+	0	NA	Intergenic	Intergenic	-133289	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
5.62249-5	chr19	46151993	46152492	+	0	NA	Intergenic	SVA_D|Other|Other	-3467	NM_001193268	24139	Hs.24178	NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	echinoderm microtubule associated protein like 2	protein-coding
3.05395-6	chr7	129465117	129465616	+	0	NA	Intergenic	Intergenic	-50512	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
0.301184-32	chr16	3333073	3333908	+	0	NA	promoter-TSS (NM_005741)	promoter-TSS (NM_005741)	3	NM_005741	10127	Hs.611475	NM_005741	ENSG00000006194	ZNF263	FPM315|ZKSCAN12|ZSCAN44	zinc finger protein 263	protein-coding
4.01209-13	chr10	49866243	49866742	+	0	NA	Intergenic	Intergenic	-2182	NR_045675	58504	Hs.655672	NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
1.79799-7	chr14	77186576	77187075	+	0	NA	Intergenic	Intergenic	-41410	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
0.51587-13	chr7	143065076	143065575	+	0	NA	Intergenic	Intergenic	-5485	NM_001031690	9715	Hs.648908	NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
7.21246-7	chr7	149412370	149412869	+	0	NA	intron (NM_032534, intron 1 of 17)	intron (NM_032534, intron 1 of 17)	517	NM_001290187	84626	Hs.299560	NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
0.338583-12	chr10	35588904	35589403	+	0	NA	intron (NM_181698, intron 3 of 11)	L1ME1|LINE|L1	-36649	NM_145012	219771	Hs.14745	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
2.54925-18	chr12	50038319	50038818	+	0	NA	TTS (NM_012272)	TTS (NM_012272)	21165	NM_012272	25766	Hs.706827	NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
0.123337-34	chr16	19729272	19729771	+	0	NA	promoter-TSS (NM_001012991)	promoter-TSS (NM_001012991)	-29	NM_001012991	400506	Hs.585209	NM_001012991	ENSG00000103550	KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine rich nucleolar protein 1	protein-coding
1.52427-11	chr13	102749928	102750427	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	-51823	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA
4.64706-7	chr9	110184442	110184941	+	0	NA	intron (NR_121581, intron 7 of 7)	intron (NR_121581, intron 7 of 7)	44175	NR_121581	101928720	Hs.125496	NR_121581		LINC01509	PRCAT37	long intergenic non-protein coding RNA 1509	ncRNA
2.82329-14	chr7	147472547	147473046	+	0	NA	intron (NM_014141, intron 13 of 23)	L3|LINE|CR1	104025	NR_133930	105375556	Hs.667432	NR_133929	ENSG00000230190	LOC105375556	-	uncharacterized LOC105375556	ncRNA
5.83359-7	chr5	40801430	40801929	+	0	NA	Intergenic	SVA_E|Other|Other	-3382	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	protein kinase AMP-activated catalytic subunit alpha 1	protein-coding
0.584886-13	chr7	90718667	90719166	+	0	NA	intron (NM_001287137, intron 10 of 12)	intron (NM_001287137, intron 10 of 12)	-174867	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
2.38072-6	chr7	129439707	129440206	+	0	NA	Intergenic	Intergenic	-25102	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
6.88246-4	chr2	216838587	216839086	+	0	NA	intron (NM_018000, intron 2 of 4)	intron (NM_018000, intron 2 of 4)	39510	NM_018000	55686	Hs.620391	NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
2.50264-8	chr2	73487381	73487880	+	0	NA	exon (NM_001080410, exon 10 of 12)	exon (NM_001080410, exon 10 of 12)	9128	NM_001080410	150726	Hs.23158	NM_001080410	ENSG00000163013	FBXO41	FBX41	F-box protein 41	protein-coding
3.37242-19	chr18	48171120	48171619	+	0	NA	intron (NM_001292039, intron 1 of 4)	intron (NM_001292039, intron 1 of 4)	84885	NM_001292040	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
4.17937-3	chrX	101975357	101975856	+	0	NA	promoter-TSS (NM_001142524)	promoter-TSS (NM_001142524)	-36	NM_001142525	80823	Hs.4276	NM_030639	ENSG00000198908	BHLHB9	GASP3|p60TRP	basic helix-loop-helix domain containing, class B, 9	protein-coding
20.5651	chr1	85695312	85695811	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-28833	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
1.38466	chr12	127268799	127269298	+	0	NA	Intergenic	Intergenic	-12240	NR_033878	387895	Hs.534660	NR_033878		LINC00944	-	long intergenic non-protein coding RNA 944	ncRNA
3.55561-9	chr16	88373670	88374169	+	0	NA	Intergenic	Intergenic	-119960	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1	zinc finger protein 469	protein-coding
3.49692-21	chr11	120205508	120206007	+	0	NA	Intergenic	Intergenic	-1861	NM_001198665	23365	Hs.24598	NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
0.0261362-23	chr6	119097644	119098143	+	0	NA	Intergenic	Intergenic	-5978	NR_037662	100287632	Hs.334026	NR_037662		LOC100287632	-	selenoprotein K pseudogene	pseudo
1.86419-4	chr11	108762539	108763038	+	0	NA	intron (NM_004398, intron 16 of 17)	LTR86B1|LTR|ERVL	227036	NM_004398	1662	Hs.591931	NM_004398	ENSG00000178105	DDX10	HRH-J8	DEAD-box helicase 10	protein-coding
16.8194-2	chr17	17920379	17920878	+	0	NA	TTS (NM_001130090)	TTS (NM_001130090)	21852	NM_145691	91647	Hs.528889	NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
0.310503-12	chr3	129829930	129830429	+	0	NA	promoter-TSS (NR_024252)	promoter-TSS (NR_024252)	97	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
1.10698-7	chr2	70417974	70418473	+	0	NA	promoter-TSS (NM_017880)	promoter-TSS (NM_017880)	-72	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
2.99296-24	chr7	121037244	121037743	+	0	NA	Intergenic	Intergenic	-1071	NM_001040020	10447	Hs.434053	NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	family with sequence similarity 3 member C	protein-coding
10.2045-6	chr14	35023207	35023706	+	0	NA	Intergenic	L2a|LINE|L2	-14513	NM_001318916	55837	Hs.433269	NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
1.62412-19	chr2	112078408	112078907	+	0	NA	promoter-TSS (NR_039634).2	promoter-TSS (NR_039634).2	6	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
0.0833099-43	chr1	17076828	17077327	+	0	NA	Intergenic	Intergenic	9475	NR_135824	102724562	Hs.349110	NR_135824		LOC102724562	-	macrophage stimulating 1 pseudogene	pseudo
16.1798-2	chr4	151512476	151512975	+	0	NA	intron (NM_001199282, intron 38 of 56)	intron (NM_001199282, intron 38 of 56)	9648	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
4.71083	chr3	193290271	193290770	+	0	NA	Intergenic	Intergenic	-17609	NM_032279	84239	Hs.674423	NM_032279	ENSG00000127249	ATP13A4	-	ATPase 13A4	protein-coding
11.2148-3	chr2	121943206	121943705	+	0	NA	Intergenic	Intergenic	99323	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
26.8613	chr12	59050344	59050843	+	0	NA	intron (NR_120452, intron 1 of 7)	MER52A|LTR|ERV1	65109	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
3.31614-3	chr16	58521524	58522023	+	0	NA	intron (NM_022910, intron 2 of 15)	CpG-9351	-12274	NM_001242833	65009	Hs.322430	NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
12.5885-5	chr5	62038418	62038917	+	0	NA	Intergenic	Intergenic	164105	NR_073584	101180901	Hs.482269	NR_073584	ENSG00000086200	IPO11-LRRC70	-	IPO11-LRRC70 readthrough	ncRNA
5.867-2	chr5	444932	445431	+	0	NA	intron (NM_007277, intron 1 of 12)	intron (NM_007277, intron 1 of 12)	1847	NM_007277	11336	Hs.481464	NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
0.190881-34	chr15	82810218	82810717	+	0	NA	intron (NR_111962, intron 7 of 10)	intron (NR_111962, intron 7 of 10)	5698	NM_001291420	440295	Hs.498322	NM_198181	ENSG00000197978	GOLGA6L9	GOLGA6L20	golgin A6 family-like 9	protein-coding
25.544-5	chr10	36327138	36327637	+	0	NA	Intergenic	LTR33|LTR|ERVL	260157	NR_110138	102578074		NR_110138	ENSG00000280719	PCAT5	LINC01452|TPCAT-10-36067	prostate cancer associated transcript 5 (non-protein coding)	ncRNA
2.62013-18	chr4	1872599	1873098	+	0	NA	promoter-TSS (NM_001042424)	promoter-TSS (NM_001042424)	-275	NM_001042424	7468	Hs.113876	NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
0.204516	chr7	157017239	157017738	+	0	NA	intron (NM_014671, intron 16 of 22)	(CTCA)n|Simple_repeat|Simple_repeat	85833	NM_014671	9690	Hs.118351	NM_014671	ENSG00000009335	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding
15.7675-4	chr8	6264694	6265193	+	0	NA	promoter-TSS (NR_040040)	promoter-TSS (NR_040040)	269	NM_001322045	79648	Hs.593807	NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
3.99027-7	chr12	72066474	72066973	+	0	NA	intron (NM_031435, intron 1 of 2)	Tigger2|DNA|TcMar-Tigger	-8974	NM_144982	196441	Hs.245798	NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
8.69666-17	chr6	43140094	43140593	+	0	NA	intron (NM_001292001, intron 1 of 6)	intron (NM_001292001, intron 1 of 6)	215	NM_001292001	6722	Hs.520140	NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
3.37242-16	chr14	61092042	61092541	+	0	NA	Intergenic	Intergenic	-13643	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
0.338583-29	chr11	61638597	61639096	+	0	NA	Intergenic	Intergenic	6904	NR_106804	102465446		NR_106804	ENSG00000277892	MIR6746	hsa-mir-6746	microRNA 6746	ncRNA
4.74955-6	chr9	95592330	95592829	+	0	NA	intron (NR_026868, intron 8 of 9)	SVA_D|Other|Other	20686	NR_026868	138649	Hs.643597	NM_001010925	ENSG00000187984	ANKRD19P	ANKRD19|bA526D8.2	ankyrin repeat domain 19, pseudogene	pseudo
15.0864-4	chr14	82994347	82994846	+	0	NA	Intergenic	Intergenic	-905191	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
1.4752-8	chr14	102562797	102563296	+	0	NA	intron (NM_001017963, intron 2 of 11)	intron (NM_001017963, intron 2 of 11)	-9534	NM_005348	3320	Hs.525600	NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
0.123337-23	chr19	52489713	52490212	+	0	NA	intron (NM_021632, intron 1 of 4)	intron (NM_021632, intron 1 of 4)	117	NM_021632	59348	Hs.407694	NM_021632	ENSG00000256683	ZNF350	ZBRK1|ZFQR	zinc finger protein 350	protein-coding
1.22629-20	chr11	60253339	60253838	+	0	NA	Intergenic	Intergenic	-6663	NM_001164470	54860	Hs.272789	NM_017716	ENSG00000071203	MS4A12	Ms4a10	membrane spanning 4-domains A12	protein-coding
1.53663-22	chr17	18934979	18935478	+	0	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	15108	NM_006613	10750	Hs.567416	NM_006613	ENSG00000154016	GRAP	-	GRB2-related adaptor protein	protein-coding
2.76544	chr12	121514918	121515417	+	0	NA	Intergenic	SVA_D|Other|Other	-38122	NM_003733	8638	Hs.118633	NM_003733	ENSG00000135114	OASL	OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
9.31814-5	chr1	110040990	110041489	+	0	NA	3' UTR (NM_182580, exon 3 of 3)	3' UTR (NM_182580, exon 3 of 3)	4538	NM_001134400	284613	Hs.514682	NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
16.8403-4	chr20	24682167	24682666	+	0	NA	Intergenic	Intergenic	231974	NM_001323607	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
3.52617-5	chr1	201500805	201501304	+	0	NA	Intergenic	Intergenic	12022	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo
0.0921731-45	chr10	21806495	21806994	+	0	NA	exon (NM_207371, exon 4 of 4)	exon (NM_207371, exon 4 of 4)	7867	NM_207371	387640	Hs.350848	NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
4.65974	chr18	12991128	12991627	+	0	NA	promoter-TSS (NM_032142)	promoter-TSS (NM_032142)	16	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
0.8302-15	chr6	169048812	169049311	+	0	NA	intron (NM_001166412, intron 9 of 12)	intron (NM_001166412, intron 9 of 12)	207230	NM_001166412	64094	Hs.487200	NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
1.51195-13	chr12	31079216	31079715	+	0	NA	promoter-TSS (NM_001080509)	promoter-TSS (NM_001080509)	-373	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
0.680339-32	chr13	75149098	75149597	+	0	NA	Intergenic	Intergenic	22367	NR_034024	338864	Hs.97408	NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
5.05845-7	chr8	75233452	75233951	+	0	NA	promoter-TSS (NM_001317830)	promoter-TSS (NM_001317830)	-105	NM_020647	56704	Hs.657367	NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding
2.68411-2	chr9	129893406	129893905	+	0	NA	intron (NM_001190728, intron 7 of 16)	intron (NM_001190728, intron 7 of 16)	-8611	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
1.89096-9	chr10	6247861	6248360	+	0	NA	intron (NM_004566, intron 1 of 14)	SVA_D|Other|Other	3270	NM_001323017	5209	Hs.195471	NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
0.282604-7	chr2	42322989	42323488	+	0	NA	Intergenic	Intergenic	48077	NM_138370	91461	Hs.408542	NM_138370	ENSG00000162878	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
3.22393-13	chr7	2644052	2644551	+	0	NA	intron (NM_152558, intron 18 of 21)	intron (NM_152558, intron 18 of 21)	-27302	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
0.0788851-8	chr2	223536062	223536561	+	0	NA	promoter-TSS (NM_058165)	promoter-TSS (NM_058165)	-146	NM_058165	116255	Hs.344090	NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
1.60522-8	chr12	117579018	117579517	+	0	NA	TTS (NR_120464)	TTS (NR_120464)	41995	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
8.86057-2	chrUn_gl000224	12929	13428	+	0	NA	Intergenic	Intergenic	-89325	NR_135481	100505874	Hs.559790	NR_135481		LOC100505874	-	uncharacterized LOC100505874	ncRNA
1.20904-19	chr8	71751867	71752366	+	0	NA	Intergenic	Intergenic	170434	NM_001287260	389668	Hs.458938	NM_001011720	ENSG00000221947	XKR9	XRG9	XK related 9	protein-coding
3.96856-10	chr14	85427877	85428376	+	0	NA	Intergenic	Intergenic	-425493	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
0.0392635-3	chr2	73120681	73121180	+	0	NA	Intergenic	Intergenic	6418	NM_003124	6697	Hs.301540	NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)	protein-coding
2.05512-2	chr15	72604882	72605381	+	0	NA	intron (NM_001172684, intron 2 of 11)	intron (NM_001172684, intron 2 of 11)	-6475	NM_001172685	60677	Hs.348342	NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP, Elav-like family member 6	protein-coding
0.0744648-27	chr12	26267312	26267811	+	0	NA	Intergenic	Intergenic	10442	NM_030762	79365	Hs.177841	NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
19.2812-5	chr10	62171059	62171558	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-21566	NM_020987	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
0.540393-31	chr7	96746626	96747125	+	0	NA	5' UTR (NM_020186, exon 1 of 2)	5' UTR (NM_020186, exon 1 of 2)	970	NM_020186	57001	Hs.592269	NM_020186	ENSG00000196636	SDHAF3	ACN9|DC11|LYRM10|Sdh7	succinate dehydrogenase complex assembly factor 3	protein-coding
7.9588-2	chr9	87011918	87012417	+	0	NA	Intergenic	Intergenic	-28754	NM_022127	64078	Hs.535966	NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
2.47184-22	chr13	107185336	107185835	+	0	NA	intron (NM_004093, intron 1 of 4)	GC_rich|Low_complexity|Low_complexity	1803	NM_004093	1948	Hs.149239	NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5	ephrin B2	protein-coding
7.16699-10	chr17	71362395	71362894	+	0	NA	intron (NM_001144952, intron 37 of 44)	intron (NM_001144952, intron 37 of 44)	-54501	NM_012121	23580	Hs.3903	NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
13.8195-5	chr12	125629593	125630092	+	0	NA	Intergenic	Intergenic	79929	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
0.0833099-52	chr7	147959721	147960220	+	0	NA	intron (NM_014141, intron 20 of 23)	MER90|LTR|ERV1	-327687	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
0.245682-31	chr14	91244867	91245366	+	0	NA	intron (NM_001320421, intron 3 of 20)	intron (NM_001320421, intron 3 of 20)	37645	NM_001320421	145567	Hs.655697	NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
1.27844-14	chr1	110976365	110976864	+	0	NA	Intergenic	Intergenic	-17174	NM_032414	84432	Hs.514793	NM_032414	ENSG00000143125	PROK1	EGVEGF|PK1|PRK1	prokineticin 1	protein-coding
3.92545-5	chr8	141521041	141521540	+	0	NA	promoter-TSS (NM_017444)	promoter-TSS (NM_017444)	-107	NM_017444	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
10.7469-6	chr8	135505224	135505723	+	0	NA	intron (NM_001174158, intron 13 of 13)	intron (NM_001174158, intron 13 of 13)	-104841	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
20.57-3	chr17	55538447	55538946	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	62262	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
3.40084-20	chr15	68522148	68522647	+	0	NA	promoter-TSS (NM_017882)	promoter-TSS (NM_017882)	-317	NM_017882	54982	Hs.584921	NM_017882	ENSG00000128973	CLN6	CLN4A|HsT18960|nclf	ceroid-lipofuscinosis, neuronal 6, late infantile, variant	protein-coding
8.76148-15	chr15	31369321	31369820	+	0	NA	intron (NM_001252020, intron 1 of 26)	intron (NM_001252020, intron 1 of 26)	-12226	NR_029624	406993		NR_029624	ENSG00000207702	MIR211	MIRN211|mir-211	microRNA 211	ncRNA
7.42321-12	chr11	60892341	60892840	+	0	NA	exon (NM_014207, exon 9 of 11)	exon (NM_014207, exon 9 of 11)	22660	NM_014207	921	Hs.58685	NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
1.12383-3	chrX	284713	285212	+	0	NA	Intergenic	CpG	3577	NR_027231	283981	Hs.575741	NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
0.385789-40	chr11	119562749	119563524	+	0	NA	intron (NM_203286, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	36299	NM_002855	5818	Hs.334846	NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
1.22629-24	chr2	176045732	176046573	+	0	NA	5' UTR (NM_001689, exon 2 of 5)	5' UTR (NM_001689, exon 2 of 5)	239	NM_001002258	518	Hs.429	NM_001689	ENSG00000154518	ATP5G3	P3	ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9)	protein-coding
1.07905-25	chr2	28568247	28568746	+	0	NA	Intergenic	Intergenic	-35170	NR_038319	100505716	Hs.679092	NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
0.0744648-37	chr7_gl000195_random	143935	144434	+	0	NA	Intergenic	L1PA11|LINE|L1	-57449	NM_001347682	389831	Hs.743984	NM_001242480	ENSG00000276256	LOC389831	-	uncharacterized LOC389831	protein-coding
1.37869-37	chr7	29845914	29846413	+	0	NA	promoter-TSS (NM_001080529)	promoter-TSS (NM_001080529)	-7	NM_001080529	644150	Hs.380698	NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
9.17215-15	chr17	1057010	1057509	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	26009	NM_021962	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
3.13364-2	chr18	66884559	66885058	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-183476	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
1.22629-22	chr22	39865349	39865848	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	7229	NR_126469	104502417	Hs.586031	NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
2.0204-5	chr5	78809628	78810127	+	0	NA	promoter-TSS (NM_004272)	promoter-TSS (NM_004272)	-218	NM_001277078	9456	Hs.591761	NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffolding protein 1	protein-coding
2.66001-28	chr1	169336400	169336899	+	0	NA	promoter-TSS (NM_003666)	promoter-TSS (NM_003666)	-468	NM_001320973	8548	Hs.130746	NM_003666	ENSG00000117475	BLZF1	GOLGIN-45|JEM-1|JEM-1s|JEM1	basic leucine zipper nuclear factor 1	protein-coding
1.81115-22	chr9	44292203	44292702	+	0	NA	Intergenic	Intergenic	-92133	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
3.18759-15	chr16	86609679	86610178	+	0	NA	Intergenic	CpG	-2187	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
16.1439	chr2	47229362	47229861	+	0	NA	intron (NM_020458, intron 8 of 19)	intron (NM_020458, intron 8 of 19)	-60617	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
0.105502-16	chr3	126373428	126373927	+	0	NA	exon (NM_001173513, exon 1 of 15)	exon (NM_001173513, exon 1 of 15)	290	NM_001173513	114112	Hs.477475	NM_052883	ENSG00000197763	TXNRD3	TGR|TR2|TRXR3	thioredoxin reductase 3	protein-coding
0.438316-11	chr5	23387737	23388236	+	0	NA	Intergenic	LTR39|LTR|ERV1	-119732	NM_020227	56979	Hs.283096	NM_020227	ENSG00000164256	PRDM9	KMT8B|MEISETZ|MSBP3|PFM6|ZNF899	PR/SET domain 9	protein-coding
0.599818-7	chr1	48175120	48175619	+	0	NA	Intergenic	CpG	-272380	NR_126355	102724077	Hs.159718	NR_126355		LINC01389	-	long intergenic non-protein coding RNA 1389	ncRNA
1.83759-5	chr11	60609235	60609734	+	0	NA	promoter-TSS (NM_024098)	promoter-TSS (NM_024098)	55	NM_024098	79080	Hs.4253	NM_024098	ENSG00000110104	CCDC86	-	coiled-coil domain containing 86	protein-coding
2.0204-3	chr12	54519622	54520121	+	0	NA	promoter-TSS (NR_026656)	promoter-TSS (NR_026656)	16	NR_026656	400043	Hs.19193	NR_026656	ENSG00000250742	LOC400043	-	uncharacterized LOC400043	ncRNA
1.94499-12	chr4	179812638	179813137	+	0	NA	Intergenic	MLT1E3-int|LTR|ERVL-MaLR	-983797	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
7.79892-8	chr11	66102174	66102673	+	0	NA	exon (NM_004292, exon 6 of 10)	exon (NM_004292, exon 6 of 10)	1577	NM_004292	9610	Hs.1030	NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
0.195421-26	chr17	1533218	1533717	+	0	NA	Intergenic	Intergenic	-1287	NM_152346	124935	Hs.160550	NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
1.28427-17	chr12	6644070	6644569	+	0	NA	promoter-TSS (NM_001256799)	promoter-TSS (NM_001256799)	-66	NM_001256799	2597	Hs.544577	NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
0.291884-34	chr7	140920029	140920528	+	0	NA	intron (NM_001195278, intron 2 of 3)	intron (NM_001195278, intron 2 of 3)	146246	NM_001195278	100507421	Hs.283851	NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
4.90797-7	chr8	3048324	3048823	+	0	NA	intron (NM_033225, intron 33 of 69)	L1MB1|LINE|L1	-462582	NR_125425	101927815	Hs.571467	NR_125423	ENSG00000254319	LOC101927815	-	uncharacterized LOC101927815	ncRNA
5.95166-14	chr16	70719762	70720261	+	0	NA	promoter-TSS (NM_138383)	promoter-TSS (NM_138383)	-57	NM_138383	92154	Hs.432387	NM_138383	ENSG00000132613	MTSS1L	ABBA|ABBA-1|ABBA1	MTSS1L, I-BAR domain containing	protein-coding
0.241089-22	chr18	34116338	34116837	+	0	NA	intron (NM_025135, intron 5 of 24)	intron (NM_025135, intron 5 of 24)	126794	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
1.56767-15	chr11	26092159	26092658	+	0	NA	Intergenic	Intergenic	-118262	NM_001313726	63982	Hs.91791	NM_031418	ENSG00000134343	ANO3	C11orf25|DYT23|DYT24|GENX-3947|TMEM16C	anoctamin 3	protein-coding
0.395292-8	chr10	5488408	5488907	+	0	NA	non-coding (NR_073040, exon 1 of 10)	non-coding (NR_073040, exon 1 of 10)	143	NM_005863	10276	Hs.25155	NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
19.3181-2	chr2	55126647	55127247	+	0	NA	intron (NM_001039753, intron 21 of 40)	intron (NM_001039753, intron 21 of 40)	110523	NM_007008	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
13.5067	chr5	142520305	142520804	+	0	NA	intron (NM_015071, intron 19 of 22)	intron (NM_015071, intron 19 of 22)	-51511	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
3.57535-4	chr6	43958341	43958840	+	0	NA	Intergenic	Intergenic	-9747	NM_153246	221416	Hs.531926	NM_153246	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
9.35542-12	chr20	30183950	30184449	+	0	NA	Intergenic	Intergenic	-8887	NM_002165	3397	Hs.504609	NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1, HLH protein	protein-coding
27.9317-4	chr7	35395430	35395929	+	0	NA	intron (NR_038864, intron 2 of 2)	intron (NR_038864, intron 2 of 2)	42213	NR_038864	401324	Hs.377034	NR_038864		LOC401324	-	uncharacterized LOC401324	ncRNA
9.914-5	chr10	16534064	16534563	+	0	NA	intron (NM_001261837, intron 4 of 4)	intron (NM_001261837, intron 4 of 4)	29691	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding
1.88425-8	chr5	43312284	43312783	+	0	NA	intron (NM_001324220, intron 1 of 10)	intron (NM_001324220, intron 1 of 10)	793	NM_001324219	3157	Hs.397729	NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
6.19789	chr7	79081381	79081880	+	0	NA	promoter-TSS (NR_038346)	promoter-TSS (NR_038346)	-643	NR_038346	100505881	Hs.31474	NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
1.21478-6	chr18	38398612	38399111	+	0	NA	Intergenic	Intergenic	701700	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
2.41845-4	chr1	225668707	225669206	+	0	NA	Intergenic	LTR53|LTR|ERVL	-52399	NM_194442	3930	Hs.435166	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
0.510982-11	chr6	152689906	152690405	+	0	NA	exon (NM_033071, exon 61 of 146)	exon (NM_033071, exon 61 of 146)	-11510	NR_120501	100505475	Hs.571203	NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
2.18963-31	chr17	3826694	3827193	+	0	NA	TTS (NM_174955)	TTS (NM_174955)	-6983	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
8.82729-6	chr1	205908721	205909220	+	0	NA	intron (NM_134325, intron 1 of 21)	intron (NM_134325, intron 1 of 21)	3618	NM_052934	115019	Hs.164073	NM_052934	ENSG00000174502	SLC26A9	-	solute carrier family 26 member 9	protein-coding
0.851282-5	chr4	170235993	170236492	+	0	NA	Intergenic	Intergenic	-43993	NM_020870	57630	Hs.301804	NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding
1.36677-5	chr16	69166188	69166687	+	0	NA	promoter-TSS (NM_032830)	promoter-TSS (NM_032830)	56	NM_001039690	54921	Hs.85962	NM_017804	ENSG00000168802	CHTF8	CTF8|DERPC	chromosome transmission fidelity factor 8	protein-coding
3.78824-4	chr6	155008877	155009376	+	0	NA	Intergenic	SVA_D|Other|Other	-45386	NM_001286189	22828	Hs.591329	NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
17.4232-2	chr2	122662026	122662525	+	0	NA	Intergenic	Intergenic	149154	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
8.69666-3	chr9	129807560	129808059	+	0	NA	intron (NM_001322323, intron 5 of 16)	L1MC3|LINE|L1	77235	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
0.0568285-7	chr12	25101797	25102296	+	0	NA	5' UTR (NM_001178091, exon 1 of 10)	5' UTR (NM_001178091, exon 1 of 10)	347	NM_001178091	586	Hs.438993	NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
1.59267-8	chr10	121062211	121062710	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-75024	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
0.154727-2	chr2	171829775	171830274	+	0	NA	Intergenic	CpG	44988	NM_015530	26003	Hs.431317	NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
14.034-4	chr12	7125019	7125518	+	0	NA	intron (NM_005768, intron 1 of 12)	intron (NM_005768, intron 1 of 12)	574	NM_005768	10162	Hs.655248	NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
1.35489-5	chr1	81910057	81910556	+	0	NA	Intergenic	Intergenic	113081	NR_125943	101927434	Hs.130394	NR_125943	ENSG00000234953	LOC101927434	-	uncharacterized LOC101927434	ncRNA
2.03426-12	chr13	50159434	50159933	+	0	NA	promoter-TSS (NM_018191)	promoter-TSS (NM_018191)	36	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding
0.0305075-68	chr3	179370465	179371461	+	0	NA	promoter-TSS (NM_003940)	promoter-TSS (NM_003940)	30	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
7.52027-7	chr15	74342407	74342906	+	0	NA	Intergenic	MIR|SINE|MIR	32235	NM_001038640	342096	Hs.546408	NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
4.32974-2	chr14	85530752	85531251	+	0	NA	Intergenic	AluJr|SINE|Alu	-322618	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
7.77284	chr10	105880488	105880987	+	0	NA	Intergenic	Intergenic	-1079	NM_145247	119392	Hs.93667	NM_145247	ENSG00000156384	SFR1	C10orf78|MEI5|MEIR5|bA373N18.1	SWI5 dependent homologous recombination repair protein 1	protein-coding
10.4239-2	chr1	37115940	37116439	+	0	NA	Intergenic	Intergenic	-167274	NM_156039	1441	Hs.524517	NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
1.21478-22	chr2	10443512	10444011	+	0	NA	promoter-TSS (NM_134421)	promoter-TSS (NM_134421)	-65	NM_134421	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
5.8838-3	chr1	220046089	220046588	+	0	NA	promoter-TSS (NR_002753)	promoter-TSS (NR_002753)	-281	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
0.0877392-6	chr9	38392415	38392914	+	0	NA	promoter-TSS (NM_000692)	promoter-TSS (NM_000692)	3	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
16.073	chr12	44802082	44802581	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	467113	NM_001145109	4753	Hs.505326	NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
0.168249-7	chr4	9002271	9002770	+	0	NA	Intergenic	CpG	51043	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	pseudo
1.71985-10	chr6	15725791	15726290	+	0	NA	Intergenic	SVA_D|Other|Other	-62751	NM_001271669	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
4.43697-7	chr13	25245375	25245874	+	0	NA	Intergenic	Intergenic	-8925	NM_001185085	479	Hs.147111	NM_001676	ENSG00000075673	ATP12A	#945|ATP1AL1|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
0.0877392	chr16	12549042	12549541	+	0	NA	intron (NM_032167, intron 18 of 20)	intron (NM_032167, intron 18 of 20)	-264887	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
0.736576-12	chr11	59305011	59305510	+	0	NA	Intergenic	Intergenic	22874	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
0.296531-144	chr5	21919486	21919985	+	0	NA	intron (NM_001317227, intron 3 of 11)	intron (NM_001317227, intron 3 of 11)	35172	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
9.62574-8	chr4	80949558	80950057	+	0	NA	intron (NM_001145794, intron 10 of 15)	intron (NM_001145794, intron 10 of 15)	44670	NM_001286781	118429	Hs.162963	NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	anthrax toxin receptor 2	protein-coding
1.12383-8	chr1	160082190	160082689	+	0	NA	Intergenic	U2|snRNA|snRNA	-3081	NM_000702	477	Hs.34114	NM_000702	ENSG00000018625	ATP1A2	FHM2|MHP2	ATPase Na+/K+ transporting subunit alpha 2	protein-coding
6.79854-4	chr9	79672223	79672722	+	0	NA	Intergenic	Intergenic	37901	NM_001013735	442425	Hs.553843	NM_001013735	ENSG00000204612	FOXB2	bA159H20.4	forkhead box B2	protein-coding
3.41989-10	chr4	154163058	154163557	+	0	NA	intron (NM_001302693, intron 1 of 2)	intron (NM_001302693, intron 1 of 2)	-15204	NM_001302694	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
10.7469-5	chr16	89766500	89766999	+	0	NA	intron (NM_152339, intron 2 of 2)	intron (NM_152339, intron 2 of 2)	1372	NM_152339	124044	Hs.374556	NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
1.43271-11	chr11	84431186	84431685	+	0	NA	intron (NM_001142699, intron 6 of 27)	intron (NM_001142699, intron 6 of 27)	203030	NM_001300983	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
2.26214-7	chr11	12985489	12985988	+	0	NA	Intergenic	Intergenic	25357	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
3.85103-16	chr2	14856463	14856962	+	0	NA	Intergenic	MIRb|SINE|MIR	81497	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding
1.18615-7	chr15	41074731	41075230	+	0	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	12821	NM_001130448	643338	Hs.631715	NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
1.26098-19	chr10	87210865	87211364	+	0	NA	intron (NR_120671, intron 1 of 5)	intron (NR_120671, intron 1 of 5)	1765	NR_120671	101929684	Hs.554059	NR_120671	ENSG00000230962	LINC01520	-	long intergenic non-protein coding RNA 1520	ncRNA
0.996329-7	chr11	121322756	121323255	+	0	NA	promoter-TSS (NM_003105)	promoter-TSS (NM_003105)	93	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
16.1798-9	chr6	66879808	66880307	+	0	NA	Intergenic	SVA_D|Other|Other	382285	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	solute carrier family 25 member 51 pseudogene 1	pseudo
1.38466-7	chr5	164731140	164731639	+	0	NA	Intergenic	Intergenic	834104	NR_105065	102546299	Hs.437730	NR_105065	ENSG00000241956	LOC102546299	-	uncharacterized LOC102546299	ncRNA
1.12946-26	chr5	83387185	83387684	+	0	NA	intron (NM_001278642, intron 5 of 9)	intron (NM_001278642, intron 5 of 9)	293251	NM_001278642	10085	Hs.482730	NM_005711	ENSG00000164176	EDIL3	DEL1	EGF like repeats and discoidin domains 3	protein-coding
1.19186-40	chr8	130995727	130996226	+	0	NA	intron (NR_046360, intron 1 of 14)	CpG	24723	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
1.39063-2	chr7	2201742	2202241	+	0	NA	intron (NM_001013836, intron 10 of 18)	SVA_B|Other|Other	70592	NM_001013836	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
5.28708-3	chr15	74890490	74890989	+	0	NA	TTS (NM_001307939)	TTS (NM_001307939)	-9974	NM_003992	1198	Hs.511790	NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
15.544-4	chr1	23034442	23034941	+	0	NA	Intergenic	L2b|LINE|L2	-2640	NM_004442	2048	Hs.380705	NM_004442	ENSG00000133216	EPHB2	CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
0.9691-12	chr5	34523140	34523639	+	0	NA	Intergenic	Intergenic	-133044	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
0.254883-9	chr15	39846483	39846982	+	0	NA	Intergenic	Intergenic	-26548	NM_003246	7057	Hs.164226	NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
0.34328-27	chr14	65129840	65130339	+	0	NA	Intergenic	Intergenic	-41037	NM_001308147	26030	Hs.509637	NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
0.381045-10	chrX	37161851	37162350	+	0	NA	Intergenic	Intergenic	-46428	NM_001173486	5638	Hs.190341	NM_000950	ENSG00000130962	PRRG1	PRGP1	proline rich and Gla domain 1	protein-coding
2.26214-6	chr3	124070882	124071381	+	0	NA	intron (NM_001024660, intron 10 of 59)	intron (NM_001024660, intron 10 of 59)	-22048	NR_106731	102464832		NR_106731	ENSG00000276656	MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
18.3268	chr11	115592282	115592781	+	0	NA	Intergenic	Intergenic	12949	NR_135066	101928985	Hs.398155	NR_135066		LOC101928985	-	uncharacterized LOC101928985	ncRNA
0.589858-16	chr2	183579880	183580379	+	0	NA	promoter-TSS (NM_001271581)	promoter-TSS (NM_001271581)	-639	NR_073367	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
0.296531-146	chr10	35932047	35932546	+	0	NA	Intergenic	Intergenic	-1934	NM_031866	8325	Hs.302634	NM_031866	ENSG00000177283	FZD8	FZ-8|hFZ8	frizzled class receptor 8	protein-coding
0.204516-11	chr22	21868369	21868868	+	0	NA	intron (NR_003700, intron 1 of 16)	intron (NR_003700, intron 1 of 16)	3162	NR_003700	375133	Hs.448225	NR_003700	ENSG00000183506	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
9.82967-7	chr11	63389732	63390231	+	0	NA	Intergenic	Intergenic	-8040	NM_001128203	11145	Hs.502775	NM_007069	ENSG00000176485	PLA2G16	AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3	phospholipase A2 group XVI	protein-coding
0.2365-15	chr1	150521288	150521787	+	0	NA	promoter-TSS (NM_019032)	promoter-TSS (NM_019032)	-308	NM_019032	54507	Hs.516243	NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
3.06273-3	chr16	85339715	85340214	+	0	NA	promoter-TSS (NR_049816)	promoter-TSS (NR_049816)	-33	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
0.0217692-9	chr16	57537266	57537765	+	0	NA	Intergenic	Intergenic	-17130	NM_018110	55715	Hs.279832	NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
0.181814-33	chr19	39737498	39737997	+	0	NA	non-coding (NR_074079, exon 5 of 5)	non-coding (NR_074079, exon 5 of 5)	1749	NR_074079	101180976	Hs.745579	NM_001276254	ENSG00000272395	IFNL4	IFNAN	interferon lambda 4 (gene/pseudogene)	protein-coding
4.64706-6	chr10	134235799	134236298	+	0	NA	Intergenic	Intergenic	-22666	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
20.1011	chr4	75658952	75659451	+	0	NA	Intergenic	LTR33B|LTR|ERVL	60695	NM_001729	685	Hs.591704	NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
31.2901-2	chr1	237145565	237146064	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	21904	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
5.14279-5	chr4	106887128	106887627	+	0	NA	intron (NM_001184693, intron 10 of 11)	intron (NM_001184693, intron 10 of 11)	56258	NR_125928	101929577	Hs.631131	NR_125928	ENSG00000249635	LOC101929577	-	uncharacterized LOC101929577	ncRNA
0.362122-8	chr3	79068414	79068913	+	0	NA	promoter-TSS (NM_133631)	promoter-TSS (NM_133631)	-54	NM_001145845	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding
2.51812-5	chr14	70152332	70152831	+	0	NA	intron (NM_014734, intron 2 of 5)	Tigger8|DNA|TcMar-Tigger	74271	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
11.3018	chr6	46081054	46081553	+	0	NA	Intergenic	Intergenic	-16398	NM_014936	22875	Hs.643497	NM_014936	ENSG00000001561	ENPP4	NPP4	ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	protein-coding
8.41638-9	chr4	4291640	4292139	+	0	NA	promoter-TSS (NM_145291)	promoter-TSS (NM_145291)	7	NM_017816	55646	Hs.425427	NM_017816	ENSG00000145220	LYAR	ZC2HC2|ZLYAR	Ly1 antibody reactive	protein-coding
1.92465-14	chr19	36207354	36207853	+	0	NA	exon (NM_014383, exon 7 of 7)	exon (NM_014383, exon 7 of 7)	-1318	NM_014727	9757	Hs.92236	NM_014727	ENSG00000272333	KMT2B	CXXC10|HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
0.241089-16	chr3	3360857	3361356	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-139705	NM_016302	51185	Hs.18925	NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
0.819697-3	chr2	45556290	45556789	+	0	NA	Intergenic	Intergenic	-74459	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA
13.4969-4	chr5	150416024	150416523	+	0	NA	intron (NM_001252385, intron 13 of 17)	intron (NM_001252385, intron 13 of 17)	16300	NM_001329790	2878	Hs.386793	NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
1.79799-30	chr8	65582397	65582896	+	0	NA	intron (NM_004820, intron 1 of 5)	intron (NM_004820, intron 1 of 5)	89851	NM_152414	27319	Hs.388788	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|Beta3a|CAGL85|TNRC20	basic helix-loop-helix family member e22	protein-coding
14.0012-5	chr11	129137435	129137934	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-75591	NM_001142685	9743	Hs.440379	NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
17.7469-2	chr1	40942688	40943187	+	0	NA	promoter-TSS (NM_001320178)	promoter-TSS (NM_001320178)	-365	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
0.798767-33	chrX	123095312	123095811	+	0	NA	promoter-TSS (NM_006603)	promoter-TSS (NM_006603)	5	NM_006603	10735	Hs.496710	NM_006603	ENSG00000101972	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding
0.0788851-7	chr2	232826822	232827321	+	0	NA	intron (NM_001257281, intron 1 of 13)	L1PA16|LINE|L1	778	NM_152383	129563	Hs.732236	NM_152383	ENSG00000144535	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
0.0130484-50	chrX	117250068	117250567	+	0	NA	intron (NM_001168301, intron 1 of 7)	CpG	511	NM_001168303	90293	Hs.348262	NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
2.62013-5	chr22	46503064	46503563	+	0	NA	intron (NR_027033, intron 4 of 5)	intron (NR_027033, intron 4 of 5)	-5316	NR_029478	406883		NR_029478	ENSG00000197182	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
0.282604-19	chr9	112282864	112283363	+	0	NA	Intergenic	Intergenic	-9288	NR_037493	100500898		NR_037493	ENSG00000263861	MIR3927	-	microRNA 3927	ncRNA
0.231917-43	chr16	70323122	70323621	+	0	NA	promoter-TSS (NM_001257174)	promoter-TSS (NM_001257174)	41	NM_001605	16	Hs.315137	NM_001605	ENSG00000090861	AARS	CMT2N|EIEE29	alanyl-tRNA synthetase	protein-coding
1.29596-20	chr15	75745299	75745798	+	0	NA	intron (NM_001145357, intron 1 of 20)	CpG-8103	-1461	NM_001145358	25942	Hs.513039	NM_015477	ENSG00000169375	SIN3A	WITKOS	SIN3 transcription regulator family member A	protein-coding
32.1681-2	chr7	148287501	148288000	+	0	NA	promoter-TSS (NM_145304)	promoter-TSS (NM_145304)	93	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
0.79355-32	chr1	217346939	217347438	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-36091	NM_001243511	2104	Hs.444225	NM_001438	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen related receptor gamma	protein-coding
1.21478-5	chr1	110648652	110649151	+	0	NA	intron (NR_126382, intron 1 of 3)	intron (NR_126382, intron 1 of 3)	-6161	NM_203412	164153	Hs.374027	NM_203412	ENSG00000186150	UBL4B	-	ubiquitin like 4B	protein-coding
5.65431-8	chrX	118811574	118812073	+	0	NA	intron (NM_145800, intron 1 of 10)	intron (NM_145800, intron 1 of 10)	15510	NM_145799	23157	Hs.496666	NM_015129	ENSG00000125354	SEPT6	SEP2|SEPT2	septin 6	protein-coding
0.209071-14	chr8	143435388	143435887	+	0	NA	intron (NM_145003, intron 2 of 13)	MIRb|SINE|MIR	48973	NM_001291931	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
3.8405-27	chr19	53201505	53202004	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-7920	NM_001277948	55769	Hs.467210	NM_018300	ENSG00000167766	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
1.29596	chr7	45031606	45032105	+	0	NA	Intergenic	SVA_B|Other|Other	-5596	NR_003697	285958	Hs.25892	NR_003697	ENSG00000232956	SNHG15	C7orf40|Linc-Myo1g|MYO1GUT	small nucleolar RNA host gene 15	ncRNA
17.2816-4	chr1	211870522	211871021	+	0	NA	Intergenic	Intergenic	-21799	NM_001204183	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding
0.118872-4	chr20	625918	626417	+	0	NA	Intergenic	Intergenic	7847	NM_080725	140809	Hs.516830	NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
10.4576-2	chr4	6118317	6118816	+	0	NA	intron (NM_001099433, intron 1 of 20)	intron (NM_001099433, intron 1 of 20)	77780	NM_001306134	152789	Hs.479066	NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
0.5061-13	chr2	73511203	73511702	+	0	NA	Intergenic	CpG	9377	NM_001965	1961	Hs.3052	NM_001965	ENSG00000135625	EGR4	NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
1.99283-7	chr7	44788036	44788535	+	0	NA	promoter-TSS (NM_031449)	promoter-TSS (NM_031449)	120	NM_001300959	83637	Hs.77978	NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
0.649968-25	chrX	118925793	118926292	+	0	NA	promoter-TSS (NM_001000)	promoter-TSS (NM_001000)	-420	NM_001000	6170	Hs.300141	NM_001000	ENSG00000198918	RPL39	L39|RPL39P42|RPL39_23_1806	ribosomal protein L39	protein-coding
0.199966-2	chr13	32889371	32889870	+	0	NA	promoter-TSS (NM_000059)	promoter-TSS (NM_000059)	3	NM_000059	675	Hs.34012	NM_000059	ENSG00000139618	BRCA2	BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2|XRCC11	BRCA2, DNA repair associated	protein-coding
0.123337-24	chr2	167199936	167200435	+	0	NA	intron (NM_002977, intron 1 of 26)	AluYb8|SINE|Alu	32312	NM_002977	6335	Hs.439145	NM_002977	ENSG00000169432	SCN9A	ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP	sodium voltage-gated channel alpha subunit 9	protein-coding
5.31653	chrX	140000454	140000953	+	0	NA	Intergenic	Intergenic	7681	NR_031725	100302169		NR_031725	ENSG00000221081	MIR320D2	MIR320D-2|MIRN320D2|hsa-mir-320d-2|mir-320d-2	microRNA 320d-2	ncRNA
0.105502-12	chr3	160938583	160939082	+	0	NA	promoter-TSS (NM_001320227)	promoter-TSS (NM_001320227)	-246	NM_001320227	51068	Hs.598836	NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
56.2525	chr5	32299384	32299883	+	0	NA	intron (NM_001040446, intron 1 of 15)	intron (NM_001040446, intron 1 of 15)	13481	NM_001294343	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
4.52225-6	chr9	140513050	140513549	+	0	NA	promoter-TSS (NR_122036)	promoter-TSS (NR_122036)	48	NR_122035	85026	Hs.522520	NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
2.62807	chr3	181977342	181977841	+	0	NA	Intergenic	Intergenic	226559	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
2.10419-8	chr2	63949904	63950403	+	0	NA	Intergenic	SVA_F|Other|Other	-117945	NM_001001521	7360	Hs.516217	NM_006759	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
7.72113-9	chr3	13087684	13088183	+	0	NA	intron (NM_001134382, intron 1 of 14)	intron (NM_001134382, intron 1 of 14)	26684	NM_001134382	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
2.88193-7	chr17	71898141	71898640	+	0	NA	Intergenic	CpG	-73714	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
8.76148-2	chr8	144653569	144654068	+	0	NA	intron (NM_001100878, intron 3 of 13)	CpG	1110	NM_001100878	642475	Hs.531406	NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
0.574959-11	chr14	49715661	49716160	+	0	NA	Intergenic	Intergenic	337224	NM_001032	6235	Hs.156367	NM_001032	ENSG00000213741	RPS29	DBA13|S29	ribosomal protein S29	protein-coding
11.4026	chr11	86382905	86383791	+	0	NA	promoter-TSS (NM_006680)	promoter-TSS (NM_006680)	79	NM_006680	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
11.9997	chr5	155339013	155339512	+	0	NA	Intergenic	Intergenic	-414505	NM_172244	6444	Hs.387207	NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
7.90485-8	chr9	37119946	37120775	+	0	NA	promoter-TSS (NM_001289119)	promoter-TSS (NM_001289119)	-109	NR_110317	84186	Hs.654700	NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
5.0724-14	chr6	108591620	108592119	+	0	NA	Intergenic	SVA_D|Other|Other	-9405	NM_001300929	8724	Hs.12102	NM_003795	ENSG00000112335	SNX3	Grd19|MCOPS8|SDP3	sorting nexin 3	protein-coding
7.85156-11	chr11	45540674	45541173	+	0	NA	Intergenic	MIRb|SINE|MIR	146283	NM_003654	8534	Hs.104576	NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
2.35824-13	chr5	8924733	8925232	+	0	NA	Intergenic	L1MA2|LINE|L1	85138	NR_109932	101929284	Hs.403715	NR_109932		LOC101929284	-	uncharacterized LOC101929284	ncRNA
7.44727-4	chr17	27446275	27446774	+	0	NA	intron (NM_001346768, intron 7 of 40)	intron (NM_001346768, intron 7 of 40)	20873	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
1.0902-7	chr11	94802726	94803225	+	0	NA	non-coding (NR_103726, exon 2 of 2)	non-coding (NR_103726, exon 2 of 2)	2934	NM_032102	10929	Hs.476680	NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding
23.2698	chr1	144987057	144987556	+	0	NA	intron (NM_001002810, intron 1 of 3)	L1MB3|LINE|L1	7727	NM_014644	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
10.7831-2	chr5	157554462	157554961	+	0	NA	Intergenic	Intergenic	-268528	NM_014666	9685	Hs.644000	NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
23.0627	chr6	83322159	83322658	+	0	NA	Intergenic	Intergenic	248447	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
4.28291-17	chr6	157148430	157148929	+	0	NA	intron (NM_020732, intron 1 of 19)	intron (NM_020732, intron 1 of 19)	-47814	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
0.0130484-37	chr7	76149571	76150070	+	0	NA	intron (NM_182684, intron 6 of 6)	intron (NM_182684, intron 6 of 6)	10080	NM_182683	105375355	Hs.488861	NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
2.54925-16	chr6	150645798	150646545	+	0	NA	Intergenic	Intergenic	-43857	NM_001164695	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
14.437-5	chr13	106426831	106427330	+	0	NA	Intergenic	Intergenic	67901	NR_120418	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
1.23205-6	chr9	21812902	21813401	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	10516	NM_002451	4507	Hs.193268	NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
1.19186-37	chr15	68521553	68522052	+	0	NA	intron (NM_017882, intron 1 of 6)	CpG	278	NM_017882	54982	Hs.584921	NM_017882	ENSG00000128973	CLN6	CLN4A|HsT18960|nclf	ceroid-lipofuscinosis, neuronal 6, late infantile, variant	protein-coding
7.01147-6	chr6	69267449	69267948	+	0	NA	Intergenic	AluJr4|SINE|Alu	76518	NR_125872	101928307	Hs.535825	NR_125872	ENSG00000230910	LOC101928307	-	uncharacterized LOC101928307	ncRNA
0.371573-9	chr3	21794189	21794688	+	0	NA	Intergenic	Intergenic	-1622	NM_024697	79750	Hs.21026	NM_024697	ENSG00000151789	ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
1.52427-17	chr16	31462977	31463476	+	0	NA	Intergenic	Intergenic	-6368	NM_001288767	79798	Hs.732945	NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
0.0612309-10	chr17	38705022	38705521	+	0	NA	Intergenic	Intergenic	11375	NM_001301718	1236	Hs.370036	NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
5.80044-15	chr14	34945588	34946087	+	0	NA	Intergenic	SVA_B|Other|Other	-14369	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
0.550241-22	chr3	183903506	183904005	+	0	NA	promoter-TSS (NM_018358)	promoter-TSS (NM_018358)	-108	NM_018358	55324	Hs.361323	NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
8.26814-6	chr9	134614533	134615032	+	0	NA	intron (NM_001304275, intron 1 of 23)	intron (NM_001304275, intron 1 of 23)	549	NM_001304275	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
0.443122-4	chr13	96056451	96056950	+	0	NA	Intergenic	Intergenic	-29153	NM_001160100	9071	Hs.534377	NM_006984	ENSG00000134873	CLDN10	CPETRL3|OSP-L	claudin 10	protein-coding
0.282604-3	chr4	7399653	7400152	+	0	NA	intron (NM_020777, intron 2 of 26)	intron (NM_020777, intron 2 of 26)	36798	NM_001085382	768239	Hs.662523	NM_001085382	ENSG00000178597	PSAPL1	-	prosaposin-like 1 (gene/pseudogene)	protein-coding
0.0921731-44	chr3	13461089	13461588	+	0	NA	intron (NM_024923, intron 1 of 39)	CpG	481	NM_024923	23225	Hs.475525	NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
0.0568285-4	chr15	20591387	20591886	+	0	NA	Intergenic	Intergenic	103639	NR_038836	646096	Hs.448789	NR_038836	ENSG00000259156	CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
0.0568285-5	chr7	151479631	151480130	+	0	NA	intron (NM_016203, intron 2 of 15)	MIRc|SINE|MIR	32077	NM_001040633	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
3.52617-6	chr8	62289516	62290015	+	0	NA	intron (NM_173519, intron 3 of 5)	intron (NM_173519, intron 3 of 5)	89240	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
0.883098-12	chr5	26889865	26890364	+	0	NA	intron (NM_016279, intron 8 of 11)	intron (NM_016279, intron 8 of 11)	148575	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
0.132283-13	chrX	103342783	103343282	+	0	NA	TTS (NM_001012755)	TTS (NM_001012755)	-14185	NM_001143978	644353	Hs.648338	NM_001143978	ENSG00000166707	ZCCHC18	PNMA7B|SIZN2	zinc finger CCHC-type containing 18	protein-coding
2.47184-5	chr15	43212881	43213380	+	0	NA	promoter-TSS (NM_173500)	promoter-TSS (NM_173500)	-123	NM_173500	146057	Hs.646511	NM_173500	ENSG00000128881	TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
0.624821-24	chr4	166161777	166162276	+	0	NA	intron (NM_007246, intron 4 of 14)	intron (NM_007246, intron 4 of 14)	30855	NM_001161521	11275	Hs.388668	NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
1.75224-3	chr10	95094572	95095071	+	0	NA	intron (NM_013451, intron 41 of 53)	L2c|LINE|L2	147253	NM_133337	26509	Hs.602086	NM_013451	ENSG00000138119	MYOF	FER1L3	myoferlin	protein-coding
4.02305-9	chr6	37070202	37070701	+	0	NA	Intergenic	Intergenic	-67471	NM_002648	5292	Hs.81170	NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
4.15669-5	chr15	92619706	92620205	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	222425	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
2.52588-5	chr4	8161676	8162175	+	0	NA	Intergenic	L2a|LINE|L2	-1366	NM_001130086	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
1.38466-4	chr13	97874448	97874947	+	0	NA	5' UTR (NM_207304, exon 1 of 7)	5' UTR (NM_207304, exon 1 of 7)	147	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
1.57391-11	chr5	102090665	102091164	+	0	NA	5' UTR (NM_001319943, exon 1 of 27)	5' UTR (NM_001319943, exon 1 of 27)	427	NM_001319943	5066	Hs.369430	NM_000919	ENSG00000145730	PAM	PAL|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
0.619809-3	chr1	146714490	146714989	+	0	NA	intron (NM_001256338, intron 1 of 16)	CpG	448	NM_024568	9557	Hs.191164	NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
5.04456-3	chr13	75548615	75549114	+	0	NA	Intergenic	Intergenic	265653	NR_027466	647288	Hs.567920	NR_027466	ENSG00000214249	CTAGE11P	-	CTAGE family member 11, pseudogene	pseudo
4.13413-11	chr1	113247492	113247991	+	0	NA	5' UTR (NM_175744, exon 2 of 6)	5' UTR (NM_175744, exon 2 of 6)	1937	NM_001042679	389	Hs.502659	NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
17.1897-3	chr13	41092683	41093182	+	0	NA	Intergenic	Intergenic	-37789	NR_024505	646982	Hs.287664	NR_024505	ENSG00000215483	LINC00598	-	long intergenic non-protein coding RNA 598	ncRNA
1.19186-11	chr16	21946345	21946844	+	0	NA	Intergenic	Intergenic	-17791	NM_003366	7385	Hs.528803	NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein II	protein-coding
0.357404-18	chr2	179778906	179779405	+	0	NA	intron (NM_173648, intron 7 of 23)	intron (NM_173648, intron 7 of 23)	-107005	NM_001267550	7273	Hs.134602	NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD	titin	protein-coding
0.920515-24	chr7	5466162	5466661	+	0	NA	Intergenic	CpG-23978	-3234	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
7.12198-2	chr7	149411535	149412034	+	0	NA	promoter-TSS (NM_001290187)	promoter-TSS (NM_001290187)	-318	NM_032534	84626	Hs.299560	NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
5.9346	chr2	131366481	131366980	+	0	NA	Intergenic	L2|LINE|L2	-2376	NM_001277083	653781	Hs.558829	NM_001277083	ENSG00000222038	POTEJ	POTE2beta	POTE ankyrin domain family member J	protein-coding
1.51811-2	chr15	91474909	91475408	+	0	NA	exon (NM_001286451, exon 3 of 4)	exon (NM_001286451, exon 3 of 4)	641	NR_104447	374659	Hs.349979	NM_198527	ENSG00000184508	HDDC3	(ppGpp)ase|MESH1	HD domain containing 3	protein-coding
0.296531-44	chr17	39845389	39845888	+	0	NA	intron (NM_005801, intron 1 of 3)	CpG	511	NM_005801	10209	Hs.150580	NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
2.27678-3	chr1	246810324	246810823	+	0	NA	exon (NM_001139459, exon 9 of 9)	exon (NM_001139459, exon 9 of 9)	-76805	NM_016002	51097	Hs.498397	NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
0.909791-3	chr5	139348277	139348776	+	0	NA	intron (NM_013983, intron 1 of 10)	intron (NM_013983, intron 1 of 10)	74358	NM_001184935	9542	Hs.408515	NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
0.629839-2	chr2	169103249	169103748	+	0	NA	intron (NM_013233, intron 1 of 17)	CpG	607	NM_013233	27347	Hs.276271	NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
2.51037-12	chr2	96813129	96813628	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-2199	NM_004418	1844	Hs.1183	NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
1.89767-17	chr14	31344077	31344576	+	0	NA	exon (NM_001347720, exon 2 of 11)	exon (NM_001347720, exon 2 of 11)	585	NM_001135058	1690	Hs.21016	NM_004086	ENSG00000100473	COCH	COCH-5B2|COCH5B2|DFNA9	cochlin	protein-coding
5.85027-3	chr4	25564642	25565141	+	0	NA	intron (NR_134641, intron 1 of 3)	L2a|LINE|L2	6077	NR_134641	101929161	Hs.125638	NR_134641		LOC101929161	-	uncharacterized LOC101929161	ncRNA
19.4692-9	chr18	45687499	45687998	+	0	NA	intron (NM_001318841, intron 3 of 4)	intron (NM_001318841, intron 3 of 4)	-24068	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
6.61544-2	chr4	110651216	110651715	+	0	NA	promoter-TSS (NM_030821)	promoter-TSS (NM_030821)	-223	NM_030821	81579	Hs.389452	NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
1.49967-7	chr10	45360237	45360736	+	0	NA	intron (NR_033842, intron 2 of 7)	CpG	-46278	NM_001345926	643236	Hs.292788	NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
2.1254-10	chr3	117347658	117348157	+	0	NA	Intergenic	Intergenic	707629	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
1.37272-29	chrX	13394900	13395399	+	0	NA	Intergenic	Intergenic	41789	NR_045260	100133123	Hs.449499	NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
2.13249-11	chr1	109820016	109820515	+	0	NA	Intergenic	Intergenic	5525	NM_001032291	84722	Hs.405925	NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
4.44906-7	chr15	91576247	91576746	+	0	NA	Intergenic	Intergenic	10644	NR_110104	101926911	Hs.459366	NR_110104	ENSG00000214432	LOC101926911	-	uncharacterized LOC101926911	ncRNA
2.61219-18	chr22	26437804	26438303	+	0	NA	Intergenic	MIR3|SINE|MIR	-127387	NM_001184774	23544	Hs.194766	NM_021115	ENSG00000100095	SEZ6L	-	seizure related 6 homolog like	protein-coding
0.357404-7	chr8	71835004	71835503	+	0	NA	Intergenic	Intergenic	253571	NM_001287260	389668	Hs.458938	NM_001011720	ENSG00000221947	XKR9	XRG9	XK related 9	protein-coding
1.39063-15	chrX	40594840	40595339	+	0	NA	promoter-TSS (NM_004229)	promoter-TSS (NM_004229)	-285	NM_004229	9282	Hs.407604	NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
2.00659-11	chr18	26408266	26408765	+	0	NA	Intergenic	MER31B|LTR|ERV1	-651105	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
7.39929-4	chr16	2200660	2201159	+	0	NA	intron (NM_014353, intron 2 of 8)	intron (NM_014353, intron 2 of 8)	2258	NM_014353	25837	Hs.3797	NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
10.7624-8	chr8	138603792	138604291	+	0	NA	Intergenic	Intergenic	-178210	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
5.00313-7	chr15	44068906	44069405	+	0	NA	promoter-TSS (NM_001199877)	promoter-TSS (NM_001199877)	-139	NM_001199877	10169	Hs.424126	NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
0.231917-3	chr3	186694685	186695184	+	0	NA	intron (NM_173217, intron 2 of 6)	intron (NM_173217, intron 2 of 6)	-44731	NM_003032	6480	Hs.207459	NM_003032	ENSG00000073849	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
0.231917-35	chr2	46118802	46119301	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	240008	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
3.52617-7	chr1	65809861	65810360	+	0	NA	intron (NM_001256864, intron 1 of 18)	intron (NM_001256864, intron 1 of 18)	34892	NM_001256864	9829	Hs.647643	NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
8.41638-12	chr14	56738901	56739400	+	0	NA	intron (NM_021255, intron 2 of 5)	intron (NM_021255, intron 2 of 5)	154057	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
0.589858-37	chr1	17029586	17030085	+	0	NA	intron (NR_026567, intron 5 of 10)	intron (NR_026567, intron 5 of 10)	16817	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	dJ1182A14.1	espin pseudogene	pseudo
5.33132-7	chrUn_gl000220	25825	26324	+	0	NA	Intergenic	L1PA10|LINE|L1	-71055	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
1.64944-18	chr7	525067	525566	+	0	NA	Intergenic	Intergenic	34165	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
0.594835-23	chr12	71834133	71834632	+	0	NA	intron (NM_003667, intron 1 of 17)	CpG	832	NM_001277226	8549	Hs.658889	NM_003667	ENSG00000139292	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine rich repeat containing G protein-coupled receptor 5	protein-coding
1.39662-11	chr4	114357438	114357937	+	0	NA	Intergenic	Intergenic	284249	NR_107049	102465878		NR_107049	ENSG00000275810	MIR8082	hsa-mir-8082	microRNA 8082	ncRNA
0.15923-12	chr19	8942720	8943615	+	0	NA	promoter-TSS (NM_144693)	promoter-TSS (NM_144693)	-187	NM_144693	148156	Hs.349444	NM_144693	ENSG00000167785	ZNF558	-	zinc finger protein 558	protein-coding
2.29148-23	chr1	182603711	182604210	+	0	NA	Intergenic	Intergenic	19685	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
1.43271-21	chr3	52931420	52931919	+	0	NA	promoter-TSS (NM_001198974)	promoter-TSS (NM_001198974)	-72	NM_198563	375346	Hs.744189	NM_198563	ENSG00000213533	TMEM110	STIMATE	transmembrane protein 110	protein-coding
0.163737-3	chr21	39288515	39289014	+	0	NA	promoter-TSS (NM_002240)	promoter-TSS (NM_002240)	-23	NM_002240	3763	Hs.626242	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium voltage-gated channel subfamily J member 6	protein-coding
0.584886-17	chr19	10613228	10613727	+	0	NA	promoter-TSS (NM_012289)	promoter-TSS (NM_012289)	4	NM_012289	9817	Hs.465870	NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
0.952845-10	chr1	179198426	179199817	+	0	NA	promoter-TSS (NM_001136001)	promoter-TSS (NM_001136001)	-302	NM_001168236	27	Hs.159472	NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
1.49354-13	chr6	26285741	26286240	+	0	NA	promoter-TSS (NM_003543)	promoter-TSS (NM_003543)	-263	NM_003543	8365	Hs.591790	NM_003543	ENSG00000158406	HIST1H4H	H4/h|H4FH	histone cluster 1 H4 family member h	protein-coding
4.54693-6	chr14	81603626	81604125	+	0	NA	intron (NM_000369, intron 8 of 9)	MLT1G|LTR|ERVL-MaLR	65303	NR_003021	677845	Hs.693251	NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
39.2082-2	chr8	49835923	49836422	+	0	NA	Intergenic	CpG	-2173	NM_003068	6591	Hs.360174	NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
0.254883-38	chr1	230511493	230511992	+	0	NA	intron (NM_001258311, intron 1 of 6)	MIRb|SINE|MIR	49932	NM_001258311	79605	Hs.520463	NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
17.3049-2	chr8	123772348	123772847	+	0	NA	Intergenic	Intergenic	-21304	NM_014943	22882	Hs.377090	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
0.76756-22	chr5	172410488	172410987	+	0	NA	promoter-TSS (NM_003945)	promoter-TSS (NM_003945)	-26	NM_003945	8992	Hs.484188	NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
3.8405-22	chr2	238600638	238601137	+	0	NA	promoter-TSS (NM_001137552)	promoter-TSS (NM_001137552)	80	NM_004735	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
2.57275-10	chr8	98904895	98905394	+	0	NA	intron (NM_002380, intron 2 of 18)	intron (NM_002380, intron 2 of 18)	23895	NM_030583	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
5.22879-30	chr3	15553614	15554113	+	0	NA	intron (NM_080539, intron 1 of 15)	intron (NM_080539, intron 1 of 15)	9395	NM_005677	8292	Hs.146735	NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
9.35542-11	chr7	92262662	92263161	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-43203	NR_109929	257415	Hs.18564	NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
6.47817-5	chr7	113727611	113728110	+	0	NA	intron (NR_033766, intron 1 of 19)	intron (NR_033766, intron 1 of 19)	1495	NR_033766	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
1.29596-11	chr2	201170536	201171419	+	0	NA	promoter-TSS (NM_001100424)	promoter-TSS (NM_001100424)	-8	NM_001100424	26010	Hs.120323	NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
14.6092	chr8	109473237	109473736	+	0	NA	intron (NM_014673, intron 5 of 10)	intron (NM_014673, intron 5 of 10)	17674	NM_001329494	9694	Hs.654351	NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
2.16096	chr6	33679039	33679538	+	0	NA	intron (NM_032340, intron 1 of 3)	CpG	240	NM_032340	84300	Hs.732448	NM_032340	ENSG00000137288	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
1.28427-6	chr11	17405403	17405902	+	0	NA	Intergenic	Intergenic	4554	NM_000525	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
20.8938	chr7	47764145	47764644	+	0	NA	Intergenic	Intergenic	-36680	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA
3.27902-9	chr20	17626902	17627401	+	0	NA	intron (NM_004587, intron 3 of 24)	MIR|SINE|MIR	35777	NM_004587	6238	Hs.472213	NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding
1.89767-16	chr1	68000295	68000794	+	0	NA	Intergenic	Intergenic	-104421	NM_001018067	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
16.6959-2	chr1	65641251	65641750	+	0	NA	intron (NM_001330616, intron 1 of 4)	intron (NM_001330616, intron 1 of 4)	26814	NM_001330616	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
10.3152	chr10	12762689	12763188	+	0	NA	intron (NM_020397, intron 3 of 9)	intron (NM_020397, intron 3 of 9)	4414	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA
0.798767-31	chr18	21215515	21216014	+	0	NA	intron (NM_173505, intron 4 of 9)	intron (NM_173505, intron 4 of 9)	27085	NM_001308238	147463	Hs.355689	NM_173505	ENSG00000154065	ANKRD29	-	ankyrin repeat domain 29	protein-coding
1.37272-12	chr17	41439109	41439608	+	0	NA	Intergenic	AluY|SINE|Alu	26908	NR_027412	100130581	Hs.546897	NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
9.28118-5	chr14	61119559	61120058	+	0	NA	Intergenic	Intergenic	-3653	NM_005982	6495	Hs.633506	NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
0.268721-6	chr20	25967170	25967669	+	0	NA	Intergenic	SST1|Satellite|centr	-23016	NR_004846	100134868	Hs.516956	NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
2.1254-2	chr1	154955458	154955957	+	0	NA	promoter-TSS (NM_001184892)	promoter-TSS (NM_001184892)	-63	NM_025207	80308	Hs.118666	NM_025207	ENSG00000160688	FLAD1	FAD1|FADS|LSMFLAD|PP591	flavin adenine dinucleotide synthetase 1	protein-coding
9.39302-11	chr21	40330150	40330649	+	0	NA	Intergenic	Intergenic	19301	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
14.0012-6	chr2	130081056	130081555	+	0	NA	Intergenic	Intergenic	-49841	NR_122040	151121	Hs.531687	NM_001033657	ENSG00000204460	LINC01854	-	long intergenic non-protein coding RNA 1854	ncRNA
5.80044-12	chr5	134073860	134074359	+	0	NA	promoter-TSS (NM_001745)	promoter-TSS (NM_001745)	-61	NM_001745	819	Hs.529846	NM_001745	ENSG00000164615	CAMLG	CAML|GET2	calcium modulating ligand	protein-coding
0.772745-13	chr22	45725299	45725798	+	0	NA	intron (NM_017911, intron 4 of 8)	intron (NM_017911, intron 4 of 8)	19763	NM_017911	55007	Hs.265018	NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
9.10095-3	chr2	128992049	128992548	+	0	NA	Intergenic	Intergenic	83873	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
7.74691-12	chr17	26551804	26552303	+	0	NA	Intergenic	SVA_F|Other|Other	-1536	NR_003064	23615	Hs.157195	NM_021093	ENSG00000237575	PYY2	-	peptide YY 2 (pseudogene)	pseudo
2.96709-12	chr7	44262258	44262757	+	0	NA	intron (NM_172084, intron 12 of 15)	intron (NM_172084, intron 12 of 15)	21929	NM_006555	10652	Hs.520794	NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding
2.38824-6	chr11	77201709	77202208	+	0	NA	Intergenic	SVA_D|Other|Other	-16850	NM_002576	5058	Hs.435714	NM_002576	ENSG00000149269	PAK1	PAKalpha	p21 (RAC1) activated kinase 1	protein-coding
2.62013-11	chr13	33294732	33295231	+	0	NA	intron (NM_015032, intron 19 of 34)	SVA_B|Other|Other	134417	NM_015032	23047	Hs.744901	NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
24.6344	chr2	105050812	105051311	+	0	NA	intron (NR_015399, intron 1 of 3)	intron (NR_015399, intron 1 of 3)	256	NR_015399	150568	Hs.107284	NR_015399	ENSG00000235597	LINC01102	-	long intergenic non-protein coding RNA 1102	ncRNA
0.851282-8	chr1	94041886	94042385	+	0	NA	intron (NM_001261408, intron 9 of 13)	intron (NM_001261408, intron 9 of 13)	8584	NM_001308251	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
3.48722-13	chr16	66957155	66957654	+	0	NA	intron (NM_001128850, intron 4 of 4)	intron (NM_001128850, intron 4 of 4)	2035	NM_004165	6236	Hs.1027	NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
1.14639-3	chr7	25163958	25164457	+	0	NA	intron (NM_018947, intron 1 of 2)	intron (NM_018947, intron 1 of 2)	773	NM_018947	54205	Hs.437060	NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
0.979971	chr17	72449162	72449661	+	0	NA	Intergenic	Intergenic	-13101	NM_001330457	11314	Hs.9688	NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
3.76751-8	chr7	155051489	155051988	+	0	NA	Intergenic	Intergenic	-37744	NM_001346590	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
5.96879-4	chr13	90417329	90417828	+	0	NA	Intergenic	L1PB4|LINE|L1	-200911	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	ncRNA
5.8838-5	chr20	47213954	47214453	+	0	NA	Intergenic	Intergenic	225549	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
16.1618-6	chr5	143963560	143964059	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	413372	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
0.0217692-17	chr8	72745084	72745583	+	0	NA	Intergenic	Intergenic	-10025	NR_033652	100132891	Hs.137674	NR_033651	ENSG00000235531	MSC-AS1	-	MSC antisense RNA 1	ncRNA
11.6749-3	chr20	25542975	25543474	+	0	NA	intron (NM_025176, intron 1 of 23)	SVA_D|Other|Other	22943	NM_025176	22981	Hs.631508	NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding
5.33132-9	chr2	145926808	145927307	+	0	NA	Intergenic	L3|LINE|CR1	501523	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
1.62412-15	chr7	148959032	148959531	+	0	NA	promoter-TSS (NM_001195220)	promoter-TSS (NM_001195220)	19	NR_144366	100289678	Hs.490512	NM_001195220	ENSG00000204946	ZNF783	-	zinc finger family member 783	protein-coding
1.12383-7	chrX	21958671	21959170	+	0	NA	5' UTR (NM_001258423, exon 1 of 9)	5' UTR (NM_001258423, exon 1 of 9)	229	NM_004595	6611	Hs.724874	NM_004595	ENSG00000102172	SMS	MRSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
0.00434512-48	chr3	122512472	122512971	+	0	NA	promoter-TSS (NM_001320728)	promoter-TSS (NM_001320728)	-47	NM_001320728	79663	Hs.29169	NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB1 associated protein 1	protein-coding
7.32828-7	chr16	2092056	2092555	+	0	NA	intron (NM_001318193, intron 3 of 4)	intron (NM_001318193, intron 3 of 4)	5565	NM_002528	4913	Hs.66196	NM_002528	ENSG00000065057	NTHL1	FAP3|NTH1|OCTS3|hNTH1	nth like DNA glycosylase 1	protein-coding
3.68556-7	chr5	37371597	37372096	+	0	NA	promoter-TSS (NM_001278312)	promoter-TSS (NM_001278312)	-618	NM_153485	9631	Hs.547696	NM_004298	ENSG00000113569	NUP155	ATFB15|N155	nucleoporin 155	protein-coding
1.32533	chr11	86174157	86174656	+	0	NA	intron (NM_001014811, intron 7 of 13)	intron (NM_001014811, intron 7 of 13)	88628	NM_001156474	60494	Hs.144913	NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
0.0744648-42	chr20	42711874	42712373	+	0	NA	Intergenic	Intergenic	104095	NM_020433	57158	Hs.441737	NM_020433	ENSG00000149596	JPH2	CMH17|JP-2|JP2	junctophilin 2	protein-coding
0.0305075-75	chr6	18507149	18507648	+	0	NA	Intergenic	LTR9|LTR|ERV1	-64617	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
0.245682-35	chr1	57042586	57043085	+	0	NA	intron (NM_003713, intron 1 of 5)	intron (NM_003713, intron 1 of 5)	2422	NM_003713	8613	Hs.405156	NM_003713	ENSG00000162407	PLPP3	Dri42|LPP3|PAP2B|PPAP2B|VCIP	phospholipid phosphatase 3	protein-coding
1.73925-13	chr15	55509677	55510176	+	0	NA	intron (NM_183235, intron 6 of 6)	intron (NM_183235, intron 6 of 6)	-20695	NM_016304	51187	Hs.274772	NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
3.41035-4	chr16	29973000	29973499	+	0	NA	promoter-TSS (NM_001083613)	promoter-TSS (NM_001083613)	-102	NM_001083613	124446	Hs.460574	NM_194280	ENSG00000149932	TMEM219	IGFBP-3R	transmembrane protein 219	protein-coding
1.00727-3	chr14	66974071	66974570	+	0	NA	5' UTR (NM_020806, exon 1 of 23)	5' UTR (NM_020806, exon 1 of 23)	195	NM_001024218	10243	Hs.208765	NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
5.30178-5	chr4	186429237	186429736	+	0	NA	exon (NM_014476, exon 5 of 8)	exon (NM_014476, exon 5 of 8)	27226	NM_014476	27295	Hs.701364	NM_014476	ENSG00000154553	PDLIM3	ALP	PDZ and LIM domain 3	protein-coding
0.338583-16	chr17	77715601	77716100	+	0	NA	3' UTR (NM_178543, exon 6 of 6)	3' UTR (NM_178543, exon 6 of 6)	10985	NM_178543	339221	Hs.114084	NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
0.15923-18	chr8	120098533	120099032	+	0	NA	intron (NM_006438, intron 1 of 5)	intron (NM_006438, intron 1 of 5)	-17761	NR_134297	101927513	Hs.676598	NR_134297	ENSG00000254278	LOC101927513	-	uncharacterized LOC101927513	ncRNA
17.3283-2	chr8	134758683	134759182	+	0	NA	Intergenic	Intergenic	30663	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
0.93665-20	chr8	75667789	75668288	+	0	NA	intron (NR_033830, intron 5 of 5)	intron (NR_033830, intron 5 of 5)	50110	NR_031744	100302260		NR_031744	ENSG00000283188	MIR2052	hsa-mir-2052	microRNA 2052	ncRNA
17.9317-3	chr8	126736979	126737478	+	0	NA	Intergenic	L2a|LINE|L2	226213	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
4.9485-5	chr3	139847404	139847903	+	0	NA	intron (NM_022131, intron 1 of 16)	LTR33|LTR|ERVL	193626	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
31.2436	chr4	147399121	147399620	+	0	NA	intron (NM_001029998, intron 4 of 11)	intron (NM_001029998, intron 4 of 11)	43753	NM_001300842	84068	Hs.659209	NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7	solute carrier family 10 member 7	protein-coding
2.80669-12	chr16	67046947	67047446	+	0	NA	Intergenic	Intergenic	12780	NM_001190201	283848	Hs.346947	NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
12.7901-4	chr11	116223142	116223641	+	0	NA	Intergenic	Intergenic	-286748	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
0.0436481-26	chr6	144734314	144734813	+	0	NA	intron (NM_007124, intron 2 of 73)	THE1B|LTR|ERVL-MaLR	7772	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
2.39578	chr1	90227935	90228434	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-58389	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
6.05548-5	chr11	77303739	77304238	+	0	NA	intron (NM_173039, intron 1 of 2)	MER5B|DNA|hAT-Charlie	3308	NM_173039	282679	Hs.503345	NM_173039	ENSG00000178301	AQP11	AQPX1	aquaporin 11	protein-coding
1.39063-11	chr14	50065284	50065783	+	0	NA	non-coding (NR_037793, exon 1 of 5)	non-coding (NR_037793, exon 1 of 5)	118	NR_037793	122769	Hs.451090	NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
1.02923-10	chr2	101769096	101769595	+	0	NA	intron (NR_135594, intron 1 of 1)	intron (NR_135594, intron 1 of 1)	1223	NR_135594	100506286	Hs.679790	NR_135594	ENSG00000272902	TBC1D8-AS1	-	TBC1 domain family member 8 antisense RNA 1	ncRNA
6.77781-9	chr7	55500819	55501318	+	0	NA	3' UTR (NM_018697, exon 9 of 9)	3' UTR (NM_018697, exon 9 of 9)	67927	NM_018697	55915	Hs.595384	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like 2	protein-coding
0.51587-28	chr4	5886355	5886854	+	0	NA	intron (NM_001014809, intron 1 of 13)	intron (NM_001014809, intron 1 of 13)	2936	NM_001288662	1400	Hs.135270	NM_001313	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
20.9366	chr8	130325904	130326403	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-72667	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
8.47712-9	chr8	144691364	144691863	+	0	NA	intron (NR_138144, intron 1 of 6)	CpG	171	NM_001329866	65263	Hs.165186	NM_023078	ENSG00000104524	PYCRL	PYCR3	pyrroline-5-carboxylate reductase-like	protein-coding
4.71083-2	chr9	123836899	123837398	+	0	NA	5' UTR (NM_001317163, exon 1 of 41)	5' UTR (NM_001317163, exon 1 of 41)	304	NM_001317163	727	Hs.494997	NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
4.77556-9	chr2	106412673	106413172	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	51402	NM_003581	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
10.8725-5	chr1	111007770	111008269	+	0	NA	Intergenic	Intergenic	14231	NM_032414	84432	Hs.514793	NM_032414	ENSG00000143125	PROK1	EGVEGF|PK1|PRK1	prokineticin 1	protein-coding
11.5927-4	chr1	208542907	208543406	+	0	NA	Intergenic	Intergenic	-125491	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
5.25784-15	chr1	110679425	110679924	+	0	NA	Intergenic	Intergenic	-13462	NM_001010898	388662	Hs.128382	NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
1.99971	chr7	40756801	40757300	+	0	NA	intron (NM_024728, intron 13 of 14)	MER61C|LTR|ERV1	262487	NR_110831	101928744	Hs.639767	NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
0.47692-17	chr21	44726738	44727237	+	0	NA	Intergenic	Intergenic	24932	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
0.268721-5	chr2	36582609	36583108	+	0	NA	promoter-TSS (NR_037631)	promoter-TSS (NR_037631)	-145	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
5.54396	chr14	91526080	91526983	+	0	NA	promoter-TSS (NM_001322238)	promoter-TSS (NM_001322238)	-53	NM_001322238	9252	Hs.510225	NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
11.6304	chr2	152697300	152697799	+	0	NA	intron (NM_001145798, intron 12 of 12)	intron (NM_001145798, intron 12 of 12)	-12540	NM_177985	26225	Hs.470233	NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
25.5752-3	chr1	180126662	180127161	+	0	NA	intron (NM_001004128, intron 1 of 12)	intron (NM_001004128, intron 1 of 12)	2943	NM_001004128	5768	Hs.744925	NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
0.496351-15	chr7	11208342	11208841	+	0	NA	intron (NR_033436, intron 16 of 16)	intron (NR_033436, intron 16 of 16)	195092	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
27.7211	chr2	67494465	67494964	+	0	NA	intron (NR_110564, intron 2 of 4)	intron (NR_110564, intron 2 of 4)	-52263	NR_038844	644838	Hs.145561	NR_038844	ENSG00000236780	LINC01829	-	long intergenic non-protein coding RNA 1829	ncRNA
4.59671-14	chr11	809366	809865	+	0	NA	promoter-TSS (NM_001004)	promoter-TSS (NM_001004)	-321	NM_001004	6181	Hs.437594	NM_001004	ENSG00000177600	RPLP2	D11S2243E|LP2|P2|RPP2	ribosomal protein lateral stalk subunit P2	protein-coding
0.660068-10	chr21	37661770	37662269	+	0	NA	intron (NM_005128, intron 35 of 36)	intron (NM_005128, intron 35 of 36)	-30468	NM_001320445	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
4.20216-7	chr7	140324103	140324602	+	0	NA	intron (NM_001318053, intron 1 of 13)	MIR3|SINE|MIR	16224	NM_015689	27147	Hs.6385	NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
3.56547-13	chr14	81710175	81710674	+	0	NA	Intergenic	SVA_B|Other|Other	-22849	NM_201595	2957	Hs.592334	NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
1.35489-36	chr17	21314254	21314753	+	0	NA	intron (NM_001194958, intron 2 of 2)	intron (NM_001194958, intron 2 of 2)	6055	NM_001194958	100134444	Hs.200629	NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium voltage-gated channel subfamily J member 18	protein-coding
1.39662-31	chr3	103821127	103821626	+	0	NA	Intergenic	L1PREC2|LINE|L1	124729	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
0.241089-33	chr20	48595578	48596077	+	0	NA	Intergenic	Intergenic	-3686	NM_005985	6615	Hs.48029	NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
5.75118	chr14	93418188	93418687	+	0	NA	intron (NM_001142593, intron 8 of 10)	intron (NM_001142593, intron 8 of 10)	28992	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A	protein-coding
1.45694-7	chr8	14066474	14066973	+	0	NA	intron (NM_001322879, intron 3 of 6)	LTR9|LTR|ERV1	579524	NR_134450	102725080	Hs.130621	NR_134450		LOC102725080	-	uncharacterized LOC102725080	ncRNA
5.67031-12	chr20	60585871	60586370	+	0	NA	intron (NM_003185, intron 3 of 14)	intron (NM_003185, intron 3 of 14)	-53738	NR_130463	100422838		NR_130463	ENSG00000265306	MIR3195	-	microRNA 3195	ncRNA
1.94499-5	chr16	9146839	9147338	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-38449	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
1.42668	chr17	7476802	7477301	+	0	NA	promoter-TSS (NR_002918)	promoter-TSS (NR_002918)	-980	NR_002918	652965	Hs.742408	NR_002918	ENSG00000209582	SNORA48	ACA48|SNORA48A	small nucleolar RNA, H/ACA box 48	snoRNA
2.38072-16	chr11	21732316	21732815	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-482157	NM_001142649	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
0.574959-13	chr6	13446539	13447038	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	25507	NR_038459	54438	Hs.484686	NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
64.3771	chr1	90267557	90268056	+	0	NA	Intergenic	Intergenic	-18767	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
0.245682-5	chr10	3165640	3166139	+	0	NA	intron (NM_001345944, intron 16 of 21)	intron (NM_001345944, intron 16 of 21)	-10407	NR_132758	106633806		NR_132758		SNORD142	SNORA85|SNORD174|ZL68	small nucleolar RNA, C/D box 142	snoRNA
2.89883-2	chr4	38665376	38665875	+	0	NA	promoter-TSS (NM_016531)	promoter-TSS (NM_016531)	-165	NM_016531	51274	Hs.298658	NM_016531	ENSG00000109787	KLF3	BKLF	Kruppel like factor 3	protein-coding
1.09579-8	chr11	119018667	119019326	+	0	NA	promoter-TSS (NM_022169)	promoter-TSS (NM_022169)	-754	NM_022169	64137	Hs.126378	NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
1.05684	chr1	21913313	21913812	+	0	NA	Intergenic	Intergenic	64786	NM_001145658	5909	Hs.148178	NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
12.7246-9	chr3	99787597	99788096	+	0	NA	intron (NM_001042459, intron 1 of 4)	intron (NM_001042459, intron 1 of 4)	45511	NM_182909	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
2.53366-6	chr7	156168957	156169456	+	0	NA	Intergenic	Intergenic	69076	NR_038232	285889	Hs.407095	NR_038232	ENSG00000233878	LOC285889	-	uncharacterized LOC285889	ncRNA
0.287242-9	chr12	125398429	125398928	+	0	NA	intron (NM_021009, intron 1 of 1)	CpG	909	NM_021009	7316	Hs.520348	NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
0.33389-3	chr15	63194260	63194759	+	0	NA	Intergenic	Intergenic	78353	NR_029709	406965		NR_029709	ENSG00000211137	MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a	microRNA 190a	ncRNA
0.680339-18	chr14	50862891	50863780	+	0	NA	promoter-TSS (NM_004196)	promoter-TSS (NM_004196)	-693	NM_004196	8814	Hs.280881	NM_004196	ENSG00000100490	CDKL1	KKIALRE|P42	cyclin dependent kinase like 1	protein-coding
8.041-2	chr1	113271565	113272064	+	0	NA	Intergenic	SVA_A|Other|Other	8625	NM_001004440	284467	Hs.439116	NM_182759	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 member A3, C-C motif chemokine like	protein-coding
2.82329-24	chr19	30335167	30335666	+	0	NA	Intergenic	CpG	32515	NM_001322262	898	Hs.244723	NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
7.87812-15	chr20	49099935	49100434	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-26674	NM_002827	5770	Hs.417549	NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
0.0305075-18	chr12	3832225	3832724	+	0	NA	intron (NM_032680, intron 2 of 10)	intron (NM_032680, intron 2 of 10)	29892	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
6.34512-18	chr11	105948719	105949218	+	0	NA	promoter-TSS (NM_152433)	promoter-TSS (NM_152433)	-503	NM_152433	143879	Hs.101949	NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding
5.30178-4	chr2	131862082	131862581	+	0	NA	promoter-TSS (NM_001100623)	promoter-TSS (NM_001100623)	-89	NM_001100623	55041	Hs.469944	NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
1.11259-15	chr1	160070761	160071260	+	0	NA	Intergenic	Intergenic	-2392	NM_001206665	93185	Hs.332012	NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
17.9317-2	chr7	22693578	22694077	+	0	NA	intron (NR_122075, intron 2 of 4)	intron (NR_122075, intron 2 of 4)	11325	NR_122075	401312	Hs.583393	NR_122075	ENSG00000238033	LOC401312	-	uncharacterized LOC401312	ncRNA
12.993-8	chr13	101142872	101143371	+	0	NA	intron (NM_001178004, intron 21 of 22)	MIR|SINE|MIR	-9852	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
3.26058	chr4	54467474	54467973	+	0	NA	intron (NR_046827, intron 1 of 1)	intron (NR_046827, intron 1 of 1)	8600	NR_046827	100873955	Hs.351074	NR_046827		LNX1-AS2	-	LNX1 antisense RNA 2	ncRNA
0.123337-28	chrX	130962553	130963052	+	0	NA	intron (NR_026975, intron 1 of 12)	intron (NR_026975, intron 1 of 12)	1869	NR_026975	286467	Hs.720385	NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
2.15383-4	chr9	92163784	92164283	+	0	NA	Intergenic	L1ME3B|LINE|L1	-55894	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
0.0130484-35	chr20	45439514	45440013	+	0	NA	Intergenic	Intergenic	-83500	NM_005244	2139	Hs.472877	NM_005244	ENSG00000064655	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
3.02771-4	chr21	40357701	40358200	+	0	NA	Intergenic	Intergenic	-8250	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
2.0204-4	chr1	223315978	223316952	+	0	NA	intron (NM_003268, intron 1 of 5)	CpG	159	NM_003268	7100	Hs.604542	NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
3.44862-14	chr4	55795491	55795990	+	0	NA	Intergenic	Intergenic	196022	NM_002253	3791	Hs.479756	NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
0.273344-8	chr13	96497374	96497873	+	0	NA	intron (NM_020121, intron 36 of 38)	SVA_B|Other|Other	168230	NM_006260	5611	Hs.59214	NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
0.594835-14	chr5	76787658	76788157	+	0	NA	intron (NM_018268, intron 1 of 12)	CpG	458	NM_018268	55255	Hs.482573	NM_018268	ENSG00000164253	WDR41	MSTP048	WD repeat domain 41	protein-coding
0.48177-13	chr11	126477162	126477661	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-45262	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
1.61151-3	chr16	4994652	4995151	+	0	NA	Intergenic	Intergenic	-7765	NM_002705	5493	Hs.192233	NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
0.0966115-4	chr3	138654832	138655331	+	0	NA	non-coding (NR_121649, exon 3 of 3)	non-coding (NR_121649, exon 3 of 3)	7781	NR_121649	103344930	Hs.195033	NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
15.4516-4	chr1	208282220	208282719	+	0	NA	intron (NM_025179, intron 4 of 31)	intron (NM_025179, intron 4 of 31)	135196	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
0.525663-13	chr5	176817369	176817868	+	0	NA	TTS (NM_001167579)	TTS (NM_001167579)	6186	NM_001167579	6569	Hs.936	NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
1.35489-24	chr17	30856491	30856990	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	42635	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
7.14443-8	chr11	94822897	94823396	+	0	NA	exon (NM_015036, exon 1 of 2)	exon (NM_015036, exon 1 of 2)	172	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
1.6877-5	chr2	26725955	26726454	+	0	NA	intron (NM_001287489, intron 6 of 45)	CpG	-25294	NM_194323	9381	Hs.91608	NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
1.21478-16	chr20	353372	353871	+	0	NA	Intergenic	Intergenic	-7652	NM_021158	57761	Hs.516826	NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
8.86057-17	chr3	59666733	59667232	+	0	NA	Intergenic	Intergenic	399871	NM_001320901	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
0.296531-39	chr1	185650087	185650586	+	0	NA	Intergenic	Intergenic	-52716	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
0.856568-33	chr3	165613601	165614100	+	0	NA	Intergenic	Intergenic	-58590	NR_137636	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
3.15155-17	chr12	70760638	70761137	+	0	NA	intron (NM_014505, intron 1 of 2)	CpG	825	NM_014505	27345	Hs.525529	NM_014505	ENSG00000135643	KCNMB4	-	potassium calcium-activated channel subfamily M regulatory beta subunit 4	protein-coding
0.213631-18	chr13	52979903	52980402	+	0	NA	intron (NM_199263, intron 1 of 3)	CpG	477	NM_199263	55901	Hs.325667	NM_018676	ENSG00000136114	THSD1	TMTSP|UNQ3010	thrombospondin type 1 domain containing 1	protein-coding
2.73273-7	chr4	90137891	90138390	+	0	NA	Intergenic	L2c|LINE|L2	91021	NM_198281	285513	Hs.100912	NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
4.4855-13	chr6	40327519	40328018	+	0	NA	Intergenic	L2a|LINE|L2	-4023	NR_038887	401260	Hs.654837	NM_001001705		LINC00951	-	long intergenic non-protein coding RNA 951	ncRNA
0.491485-6	chr8	140916121	140916620	+	0	NA	intron (NM_031466, intron 20 of 22)	L2b|LINE|L2	194264	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
12.0971-4	chr1	208274047	208274546	+	0	NA	intron (NM_025179, intron 5 of 31)	intron (NM_025179, intron 5 of 31)	143369	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
1.50581-14	chr16	70147860	70148359	+	0	NA	5' UTR (NM_017990, exon 1 of 19)	5' UTR (NM_017990, exon 1 of 19)	580	NM_001322118	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
0.338583-15	chr4	140656612	140657111	+	0	NA	intron (NM_018717, intron 3 of 5)	CpG	69939	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
0.409586-43	chr5	161494672	161495171	+	0	NA	5' UTR (NM_000816, exon 1 of 9)	5' UTR (NM_000816, exon 1 of 9)	273	NM_000816	2566	Hs.7195	NM_000816	ENSG00000113327	GABRG2	CAE2|ECA2|GEFSP3	gamma-aminobutyric acid type A receptor gamma2 subunit	protein-coding
0.419142-49	chr14	35342580	35343079	+	0	NA	intron (NM_013448, intron 2 of 26)	intron (NM_013448, intron 2 of 26)	2024	NM_182648	11177	Hs.509140	NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	bromodomain adjacent to zinc finger domain 1A	protein-coding
0.070049-21	chr2	11243432	11243931	+	0	NA	intron (NR_040080, intron 8 of 8)	intron (NR_040080, intron 8 of 8)	28621	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
22.1183	chr5	174714900	174715399	+	0	NA	Intergenic	Intergenic	156014	NM_000794	1812	Hs.2624	NM_000794	ENSG00000184845	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
3.99027-10	chr1	41249127	41249626	+	0	NA	promoter-TSS (NM_172163)	promoter-TSS (NM_172163)	-308	NM_004700	9132	Hs.473058	NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
4.57175-4	chr22	26726833	26727332	+	0	NA	intron (NM_001184773, intron 9 of 16)	intron (NM_001184773, intron 9 of 16)	-98198	NM_020437	57168	Hs.567547	NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
9.50782-3	chr8	145150776	145151275	+	0	NA	intron (NM_001916, intron 2 of 6)	intron (NM_001916, intron 2 of 6)	1087	NM_001916	1537	Hs.289271	NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
2.61219-23	chr11	66313328	66313827	+	0	NA	promoter-TSS (NM_001258371)	promoter-TSS (NM_001258371)	94	NM_207340	254359	Hs.659933	NM_207340	ENSG00000174165	ZDHHC24	-	zinc finger DHHC-type containing 24	protein-coding
14.5717-3	chr14	72113699	72114198	+	0	NA	intron (NM_015556, intron 4 of 21)	intron (NM_015556, intron 4 of 21)	59660	NM_001284247	26037	Hs.654657	NM_015556	ENSG00000197555	SIPA1L1	E6TP1	signal induced proliferation associated 1 like 1	protein-coding
0.8302-12	chr17	15554920	15555419	+	0	NA	5' UTR (NM_006470, exon 4 of 9)	5' UTR (NM_006470, exon 4 of 9)	31024	NM_006470	10626	Hs.123534	NM_006470	ENSG00000221926	TRIM16	EBBP	tripartite motif containing 16	protein-coding
0.296531-132	chr9_gl000199_random	155451	155950	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
3.32547-6	chr1	154531182	154531681	+	0	NA	promoter-TSS (NM_017582)	promoter-TSS (NM_017582)	-311	NM_017582	55585	Hs.607928	NM_017582	ENSG00000160714	UBE2Q1	GTAP|NICE-5|PRO3094|UBE2Q	ubiquitin conjugating enzyme E2 Q1	protein-coding
6.75718-7	chrUn_gl000224	6530	7029	+	0	NA	Intergenic	Intergenic	-95724	NR_135481	100505874	Hs.559790	NR_135481		LOC100505874	-	uncharacterized LOC100505874	ncRNA
2.26945-17	chr1	57142201	57142700	+	0	NA	intron (NM_006252, intron 2 of 8)	intron (NM_006252, intron 2 of 8)	-31459	NR_135111	101929935		NR_135111		LOC101929935	-	uncharacterized LOC101929935	ncRNA
1.56145	chr1	200984660	200985159	+	0	NA	intron (NM_017596, intron 1 of 33)	L3b|LINE|CR1	7919	NM_001252100	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
24.3063	chr5	123624759	123625258	+	0	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	149205	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
17.7469	chr2	197924128	197924627	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-132922	NM_001321099	80055	Hs.229988	NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding
3.63512-30	chr7	83285166	83285665	+	0	NA	Intergenic	Intergenic	-6936	NM_012431	9723	Hs.528721	NM_012431	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	semaphorin 3E	protein-coding
6.9897-16	chr6	98491935	98492434	+	0	NA	Intergenic	Intergenic	19777	NR_031579	100302164		NR_031579	ENSG00000238367	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
2.74088-13	chr9	28779132	28779631	+	0	NA	intron (NM_001258282, intron 2 of 6)	intron (NM_001258282, intron 2 of 6)	-60078	NM_152570	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
5.59091-12	chr21	39699149	39699648	+	0	NA	intron (NR_110545, intron 5 of 5)	intron (NR_110545, intron 5 of 5)	18600	NR_110545	102724678	Hs.635675	NR_110545		LINC01423	-	long intergenic non-protein coding RNA 1423	ncRNA
0.798767-4	chr18	47326816	47327315	+	0	NA	intron (NM_006111, intron 2 of 9)	SVA_D|Other|Other	13186	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
4.25969-16	chr7	101007076	101007575	+	0	NA	intron (NM_001278563, intron 1 of 13)	CpG	1224	NM_001278563	136227	Hs.654854	NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
1.80456	chr2	42587155	42587654	+	0	NA	promoter-TSS (NR_134948)	promoter-TSS (NR_134948)	-226	NR_134948	9167	Hs.339639	NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
0.109954-24	chr2	68589052	68589551	+	0	NA	Intergenic	Intergenic	-3021	NM_002664	5341	Hs.468840	NM_002664	ENSG00000115956	PLEK	P47	pleckstrin	protein-coding
2.32844-3	chr7	18461179	18461678	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	-73905	NM_001321877	9734	Hs.196054	NM_014707	ENSG00000048052	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
2.96709-2	chr3	42420332	42420831	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	31513	NM_144634	131375	Hs.234895	NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
7.59451-3	chr6	158252446	158252945	+	0	NA	intron (NM_016224, intron 1 of 17)	L1MEe|LINE|L1	8492	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
0.91515-17	chr9	110815731	110816230	+	0	NA	Intergenic	Intergenic	-563979	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
31.7783	chr8	135998780	135999279	+	0	NA	Intergenic	L2|LINE|L2	136851	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
0.877779-3	chr3	39222217	39222716	+	0	NA	Intergenic	CpG	11611	NM_194293	165904	Hs.447868	NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
3.95774-18	chr1	229205842	229206341	+	0	NA	Intergenic	Intergenic	104457	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
7.72113-2	chr16	58160817	58161316	+	0	NA	intron (NM_013242, intron 1 of 5)	intron (NM_013242, intron 1 of 5)	2230	NM_013242	29105	Hs.532755	NM_013242	ENSG00000070761	CFAP20	C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
5.22879-21	chr3	112994643	112995142	+	0	NA	intron (NM_033254, intron 9 of 19)	intron (NM_033254, intron 9 of 19)	63548	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
0.371573-15	chr6	27156469	27156968	+	0	NA	Intergenic	HERVKC4-int|LTR|ERVK	41313	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
0.118872-32	chr7	67090151	67090650	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	289437	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
0.181814-9	chr11	15056840	15057339	+	0	NA	Intergenic	MER52C|LTR|ERV1	-38057	NM_000728	797	Hs.534305	NM_000728	ENSG00000175868	CALCB	CALC2|CGRP-II|CGRP2	calcitonin related polypeptide beta	protein-coding
0.264104-7	chr8	22530411	22530910	+	0	NA	Intergenic	Intergenic	-3999	NM_018688	55909	Hs.433722	NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
18.5699-3	chr14	75401319	75401818	+	0	NA	Intergenic	Intergenic	-12423	NM_031464	83694	Hs.414481	NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
1.49967-20	chr16	23652473	23652972	+	0	NA	promoter-TSS (NM_024675)	promoter-TSS (NM_024675)	35	NM_032486	84516	Hs.435941	NM_032486	ENSG00000166847	DCTN5	-	dynactin subunit 5	protein-coding
15.9688-11	chr18	6203723	6204222	+	0	NA	intron (NM_001330559, intron 12 of 18)	intron (NM_001330559, intron 12 of 18)	-52771	NR_110765	101927150		NR_110765		L3MBTL4-AS1	-	L3MBTL4 antisense RNA 1	ncRNA
0.222764-20	chr7	129153688	129154187	+	0	NA	Intergenic	Intergenic	11617	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
18.8941-4	chr16	4524392	4524891	+	0	NA	promoter-TSS (NM_001127206)	promoter-TSS (NM_001127206)	10	NM_001305141	57407	Hs.288969	NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
10.8991	chr3	129221844	129222343	+	0	NA	intron (NM_001280546, intron 18 of 27)	intron (NM_001280546, intron 18 of 27)	-25389	NM_000539	6010	Hs.247565	NM_000539	ENSG00000163914	RHO	CSNBAD1|OPN2|RP4	rhodopsin	protein-coding
0.0877392-2	chr19	58520885	58521384	+	0	NA	Intergenic	CpG	-6420	NM_025027	80095	Hs.654967	NM_025027	ENSG00000166704	ZNF606	ZNF328	zinc finger protein 606	protein-coding
3.40084-24	chr22	45097664	45098163	+	0	NA	promoter-TSS (NM_181333)	promoter-TSS (NM_181333)	-165	NM_181334	553158	Hs.102336	NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
0.925886-16	chrX	53102171	53102670	+	0	NA	intron (NM_018969, intron 1 of 1)	intron (NM_018969, intron 1 of 1)	-9122	NM_022117	64061	Hs.136164	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
0.579919-13	chr3	193788792	193789291	+	0	NA	promoter-TSS (NR_136179)	promoter-TSS (NR_136179)	-282	NR_136179	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
0.070049-22	chr1	25893337	25893836	+	0	NA	3' UTR (NM_015627, exon 9 of 9)	3' UTR (NM_015627, exon 9 of 9)	23510	NM_015627	26119	Hs.590911	NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding
8.15309-2	chr7	51148495	51148994	+	0	NA	intron (NM_001287438, intron 7 of 7)	intron (NM_001287438, intron 7 of 7)	235814	NM_001346442	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
12.7003	chr18	45759671	45760170	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-96240	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
1.34304-8	chr22	36855360	36855859	+	0	NA	Intergenic	Intergenic	22078	NM_012473	25828	Hs.211929	NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2	thioredoxin 2	protein-coding
6.42065-6	chr1	213031973	213032472	+	0	NA	promoter-TSS (NR_027285)	promoter-TSS (NR_027285)	625	NM_014053	28982	Hs.7055	NM_014053	ENSG00000162769	FLVCR1	AXPC1|FLVCR|MFSD7B|PCA|PCARP	feline leukemia virus subgroup C cellular receptor 1	protein-coding
9.1364-10	chr3	34254134	34254633	+	0	NA	Intergenic	L2a|LINE|L2	414320	NM_001256192	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
3.95774-21	chr1	161426745	161427244	+	0	NA	Intergenic	CpG	-48211	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
0.231917-15	chr11	12799009	12799508	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	103289	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
3.8405-12	chr18	77285970	77286469	+	0	NA	intron (NM_172387, intron 9 of 9)	CpG	125945	NM_001278672	4772	Hs.534074	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T-cells 1	protein-coding
10.7779	chr12	58922988	58923487	+	0	NA	Intergenic	MER82|DNA|TcMar-Tigger	-62247	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
0.282604-17	chr14	54641957	54642456	+	0	NA	Intergenic	Intergenic	-218597	NM_130850	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
16.4975	chr11	57671109	57671608	+	0	NA	Intergenic	Intergenic	-119995	NM_001005212	219956	Hs.689841	NM_001005212	ENSG00000186509	OR9Q1	-	olfactory receptor family 9 subfamily Q member 1	protein-coding
0.467237-32	chr18	5073209	5073708	+	0	NA	Intergenic	Intergenic	123797	NM_001145194	642597	Hs.437160	NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
0.48177-32	chr5	180229515	180230014	+	0	NA	5' UTR (NM_002406, exon 1 of 2)	5' UTR (NM_002406, exon 1 of 2)	284	NM_002406	4245	Hs.519818	NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	protein-coding
1.87087-4	chr6	118693397	118693896	+	0	NA	Intergenic	Intergenic	-128890	NR_002730	23629	Hs.648050	NR_002730		BRD7P3	BP75	bromodomain containing 7 pseudogene 3	pseudo
3.44862-2	chr4	28483125	28483624	+	0	NA	Intergenic	Intergenic	-337830	NR_036237	100422937		NR_036237	ENSG00000283275	MIR4275	-	microRNA 4275	ncRNA
14.828	chr7	7178469	7178968	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-42301	NR_034022	100131257	Hs.551110	NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
6.0206-3	chr1	156066367	156066866	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	14279	NM_001282625	4000	Hs.594444	NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
3.9794-12	chr11	66636085	66636584	+	0	NA	exon (NM_000920, exon 9 of 22)	exon (NM_000920, exon 9 of 22)	11458	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
41.4206-3	chr1	201077692	201078191	+	0	NA	intron (NM_000069, intron 2 of 43)	intron (NM_000069, intron 2 of 43)	3753	NM_000069	779	Hs.1294	NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
13.0016	chr7	158359689	158360188	+	0	NA	intron (NM_130843, intron 1 of 21)	intron (NM_130843, intron 1 of 21)	20556	NM_130843	5799	Hs.490789	NM_002847	ENSG00000155093	PTPRN2	IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2	protein tyrosine phosphatase, receptor type N2	protein-coding
20.7314-3	chr2	87807088	87807587	+	0	NA	intron (NR_024204, intron 3 of 3)	intron (NR_024204, intron 3 of 3)	52363	NR_024206	112597	Hs.652166	NM_052871	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
2.61219-26	chr6	50623510	50624009	+	0	NA	Intergenic	Intergenic	-57498	NM_172238	83741	Hs.434107	NM_172238	ENSG00000008197	TFAP2D	TFAP2BL1	transcription factor AP-2 delta	protein-coding
0.268721-2	chr6	37787938	37788437	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	880	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
16.7778	chr7	37188574	37189073	+	0	NA	intron (NM_001206482, intron 13 of 21)	intron (NM_001206482, intron 13 of 21)	151422	NR_104120	100861514	Hs.627775	NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
3.29754-13	chr8	9008258	9008757	+	0	NA	promoter-TSS (NM_024607)	promoter-TSS (NM_024607)	-287	NM_024607	79660	Hs.458513	NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
2.79014-9	chr11	78903349	78903848	+	0	NA	intron (NM_001098816, intron 3 of 33)	SVA_D|Other|Other	209555	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
20.0349	chr17	25831467	25831966	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	32680	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
23.7469-2	chr3	16245135	16245634	+	0	NA	intron (NM_001319051, intron 3 of 9)	intron (NM_001319051, intron 3 of 9)	-12899	NM_001319052	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
0.931265	chr9	22379140	22379639	+	0	NA	Intergenic	Intergenic	-67451	NM_022160	63951	Hs.371976	NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
5.71865-3	chr4	119713517	119714016	+	0	NA	intron (NM_014822, intron 8 of 22)	SVA_B|Other|Other	43585	NM_014822	9871	Hs.189641	NM_014822	ENSG00000150961	SEC24D	CLCRP2	SEC24 homolog D, COPII coat complex component	protein-coding
0.0921731-22	chr9	123618971	123619470	+	0	NA	non-coding (NR_104601, exon 9 of 9)	non-coding (NR_104601, exon 9 of 9)	11969	NM_001286842	26147	Hs.460124	NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
0.726296-2	chr7	30266379	30266878	+	0	NA	Intergenic	Intergenic	-57295	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
2.70026-6	chr1	100790945	100791444	+	0	NA	Intergenic	Intergenic	-19377	NM_001319211	8556	Hs.127411	NM_003672	ENSG00000079335	CDC14A	DFNB105|cdc14|hCDC14	cell division cycle 14A	protein-coding
0.141246-34	chr21	34641330	34641829	+	0	NA	intron (NM_000628, intron 2 of 6)	intron (NM_000628, intron 2 of 6)	2914	NM_000628	3588	Hs.654593	NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2	interleukin 10 receptor subunit beta	protein-coding
6.51695-9	chr3	189679255	189679754	+	0	NA	intron (NM_001134418, intron 14 of 14)	intron (NM_001134418, intron 14 of 14)	131793	NR_030642	100126340		NR_030642	ENSG00000216058	MIR944	MIRN944|hsa-mir-944|mir-944	microRNA 944	ncRNA
0.310503-28	chrX	39471433	39471932	+	0	NA	Intergenic	Intergenic	-48788	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
0.540393-4	chr1	36955032	36955531	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-6366	NM_156039	1441	Hs.524517	NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
0.127808-6	chr10	63843063	63843562	+	0	NA	intron (NM_032199, intron 8 of 9)	intron (NM_032199, intron 8 of 9)	34342	NM_001244638	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
14.3771-5	chr2	50639016	50639515	+	0	NA	intron (NM_001135659, intron 18 of 23)	SVA_B|Other|Other	-64371	NM_138735	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
0.231917-28	chr6	41743561	41744060	+	0	NA	intron (NM_006653, intron 3 of 6)	intron (NM_006653, intron 3 of 6)	3833	NM_006653	10817	Hs.194208	NM_006653	ENSG00000137218	FRS3	FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2	fibroblast growth factor receptor substrate 3	protein-coding
1.62412-16	chr7	27135479	27135978	+	0	NA	promoter-TSS (NM_153620)	promoter-TSS (NM_153620)	15	NR_038366	100506311	Hs.445239	NR_038366	ENSG00000233429	HOTAIRM1	HOXA-AS1|HOXA1-AS1|NCRNA00179	HOXA transcript antisense RNA, myeloid-specific 1	ncRNA
3.02771-6	chr11	61485878	61486377	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	-33982	NM_001127392	745	Hs.473109	NM_013279	ENSG00000124920	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
7.18967	chr19	511173	511672	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	3925	NM_033513	91978	Hs.369613	NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
7.01147-18	chr14	19933493	19933992	+	0	NA	Intergenic	Intergenic	-8408	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
10.7988	chr7	29960014	29960513	+	0	NA	3' UTR (NM_001145513, exon 8 of 8)	3' UTR (NM_001145513, exon 8 of 8)	69162	NM_001145515	9805	Hs.520740	NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
1.37869	chr16	4588541	4589040	+	0	NA	promoter-TSS (NM_001199054)	promoter-TSS (NM_001199054)	26	NM_013399	29965	Hs.654653	NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
0.0524306-16	chr1	16543429	16543928	+	0	NA	Intergenic	Intergenic	-4512	NM_153213	128272	Hs.591532	NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
1.41463-17	chr14	77390758	77391257	+	0	NA	Intergenic	Intergenic	-34974	NR_133913	105370578	Hs.574184	NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
1.73277-18	chr5	10140614	10141113	+	0	NA	Intergenic	L2c|LINE|L2	109158	NR_047669	134145	Hs.481569	NM_199133	ENSG00000150756	FAM173B	JS-2	family with sequence similarity 173 member B	protein-coding
0.34328-32	chrX	57936387	57936886	+	0	NA	exon (NM_007156, exon 1 of 1)	exon (NM_007156, exon 1 of 1)	431	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
9.39302-24	chr7	97844773	97845272	+	0	NA	3' UTR (NM_015395, exon 26 of 26)	3' UTR (NM_015395, exon 26 of 26)	3456	NM_177455	168620	Hs.511979	NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
5.95166-7	chr6	53223558	53224057	+	0	NA	Intergenic	Intergenic	-9830	NM_001242828	60481	Hs.520189	NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
0.540393-11	chr10	21367665	21368164	+	0	NA	intron (NM_001173484, intron 2 of 6)	intron (NM_001173484, intron 2 of 6)	67574	NM_001177483	387638	Hs.664110	NM_001010896	ENSG00000204683	C10orf113	bA165O3.1	chromosome 10 open reading frame 113	protein-coding
4.96209-2	chr8	83603332	83603831	+	0	NA	Intergenic	L1MA4|LINE|L1	-220758	NR_134295	101927141	Hs.128557	NR_134295	ENSG00000254394	LOC101927141	-	uncharacterized LOC101927141	ncRNA
0.315171-3	chrX	74144591	74145090	+	0	NA	5' UTR (NM_001008537, exon 1 of 4)	5' UTR (NM_001008537, exon 1 of 4)	447	NM_001008537	340533	Hs.124128	NM_001008537	ENSG00000050030	KIAA2022	KIDLIA|MRX98|XPN	KIAA2022	protein-coding
3.99027-11	chr7	87732092	87732591	+	0	NA	intron (NM_001324421, intron 4 of 28)	intron (NM_001324421, intron 4 of 28)	-113634	NR_120517	102723885	Hs.489040	NR_120517		LOC102723885	-	uncharacterized LOC102723885	ncRNA
0.409586-26	chr3	104274509	104275008	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-328653	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
8.60121-12	chr7	90915658	90916157	+	0	NA	Intergenic	Intergenic	22124	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
3.49692-9	chr6	157205380	157205879	+	0	NA	intron (NM_020732, intron 3 of 19)	intron (NM_020732, intron 3 of 19)	-104764	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
3.33482-2	chr5	44809666	44810165	+	0	NA	intron (NM_016640, intron 1 of 4)	intron (NM_016640, intron 1 of 4)	888	NM_016640	10884	Hs.124165	NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
8.79426-7	chr14	106165304	106165803	+	0	NA	Intergenic	Intergenic	-26409	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
8.9279-12	chr13	45642109	45642608	+	0	NA	Intergenic	Intergenic	-38056	NR_120424	101929259	Hs.638490	NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
0.629839-13	chrX	53100815	53101314	+	0	NA	intron (NM_018969, intron 1 of 1)	intron (NM_018969, intron 1 of 1)	-10478	NM_022117	64061	Hs.136164	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
26.2709	chr2	108145338	108146084	+	0	NA	Intergenic	LTR9|LTR|ERV1	-179730	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
3.74688-2	chr13	23388194	23388693	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	83877	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	brain abundant, membrane attached signal protein 1 pseudogene 1	pseudo
1.53663-37	chr3	58291733	58292232	+	0	NA	promoter-TSS (NM_001098783)	promoter-TSS (NM_001098783)	10	NR_049756	11102	Hs.446320	NM_007042	ENSG00000163684	RPP14	HsHTD2|P14	ribonuclease P/MRP subunit p14	protein-coding
3.49692-4	chr1	38096641	38097140	+	0	NA	intron (NM_001242908, intron 2 of 7)	intron (NM_001242908, intron 2 of 7)	3705	NM_001242909	284654	Hs.135015	NM_173640	ENSG00000169218	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
5.95166-6	chr15	44084168	44084667	+	0	NA	promoter-TSS (NM_001199878)	promoter-TSS (NM_001199878)	-158	NM_001199878	10169	Hs.424126	NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
4.46117-2	chr14	65006877	65007376	+	0	NA	promoter-TSS (NR_110550)	promoter-TSS (NR_110550)	-40	NR_110550	102723809	Hs.667192	NR_110550	ENSG00000259116	LOC102723809	-	uncharacterized LOC102723809	ncRNA
3.63512-22	chr12	85305463	85305962	+	0	NA	intron (NM_182767, intron 1 of 11)	CpG	896	NM_182767	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
45.8336	chr4	124509121	124509620	+	0	NA	Intergenic	Intergenic	-64570	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
0.594835-18	chr20	34356918	34357417	+	0	NA	Intergenic	Intergenic	-2756	NM_016436	51230	Hs.517044	NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
0.254883-23	chr16	85309141	85309640	+	0	NA	Intergenic	Intergenic	-7174	NR_038859	197196	Hs.679002	NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
2.13249-21	chr5	134240288	134240787	+	0	NA	promoter-TSS (NM_032151)	promoter-TSS (NM_032151)	-273	NM_032151	84105	Hs.710014	NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
1.64944-5	chr1	11020922	11021421	+	0	NA	intron (NM_001170754, intron 5 of 12)	intron (NM_001170754, intron 5 of 12)	20923	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
9.39302-7	chr5	6482767	6483266	+	0	NA	intron (NM_001145161, intron 1 of 1)	intron (NM_001145161, intron 1 of 1)	34280	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
2.11832-4	chr4	25032001	25032500	+	0	NA	exon (NM_018176, exon 1 of 8)	exon (NM_018176, exon 1 of 8)	164	NM_018176	55203	Hs.12488	NM_018176	ENSG00000153012	LGI2	LGIL2	leucine rich repeat LGI family member 2	protein-coding
0.305841-2	chr12	57633573	57634072	+	0	NA	intron (NM_020142, intron 1 of 4)	CpG	653	NM_020142	56901	Hs.75069	NM_020142	ENSG00000185633	NDUFA4L2	NUOMS	NDUFA4, mitochondrial complex associated like 2	protein-coding
15.1004-4	chr3	128456319	128456818	+	0	NA	intron (NM_004637, intron 1 of 5)	AluJb|SINE|Alu	11589	NM_004637	7879	Hs.684374	NM_004637	ENSG00000075785	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
17.167	chr2	157195115	157195614	+	0	NA	Intergenic	Intergenic	-6077	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
7.9588-7	chr18	21698885	21699384	+	0	NA	intron (NM_001292030, intron 3 of 8)	intron (NM_001292030, intron 3 of 8)	5817	NM_001292030	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
2.61219-17	chr14	99946216	99946715	+	0	NA	intron (NM_199123, intron 1 of 8)	CpG	761	NM_032233	84193	Hs.510407	NM_032233	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
13.7986-2	chr16	70514175	70514674	+	0	NA	TTS (NM_145059)	TTS (NM_145059)	25926	NM_145059	197258	Hs.7907	NM_145059	ENSG00000157353	FUK	1110046B12Rik	fucokinase	protein-coding
0.0261362-4	chr19	34175716	34176215	+	0	NA	5' UTR (NM_022467, exon 1 of 4)	5' UTR (NM_022467, exon 1 of 4)	531	NM_022467	64377	Hs.165724	NM_022467	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST|PSS3	carbohydrate sulfotransferase 8	protein-coding
0.609802-20	chr5	133424600	133425099	+	0	NA	Intergenic	Intergenic	-25540	NM_003202	6932	Hs.573153	NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7 (T-cell specific, HMG-box)	protein-coding
0.974532	chr2	219759093	219759592	+	0	NA	TTS (NM_025216)	TTS (NM_025216)	14087	NM_025216	80326	Hs.121540	NM_025216	ENSG00000135925	WNT10A	OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
1.29011-20	chr6	170475610	170476109	+	0	NA	promoter-TSS (NR_125878)	promoter-TSS (NR_125878)	-7	NR_125878	102724511	Hs.550045	NR_125878		LOC102724511	-	uncharacterized LOC102724511	ncRNA
21.4813	chr3	193741677	193742176	+	0	NA	intron (NR_136179, intron 1 of 2)	intron (NR_136179, intron 1 of 2)	-20478	NR_033944	647323	Hs.652830	NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
13.5952	chr16	84401561	84402060	+	0	NA	promoter-TSS (NM_001286527)	promoter-TSS (NM_001286527)	-319	NM_001286527	9914	Hs.6168	NM_014861	ENSG00000064270	ATP2C2	SPCA2	ATPase secretory pathway Ca2+ transporting 2	protein-coding
32.2915-4	chr4	106472976	106473475	+	0	NA	promoter-TSS (NM_017700)	promoter-TSS (NM_017700)	-552	NM_017700	54848	Hs.585224	NM_017700	ENSG00000236699	ARHGEF38	-	Rho guanine nucleotide exchange factor 38	protein-coding
0.609802-7	chr2	175547345	175547844	+	0	NA	promoter-TSS (NM_001077269)	promoter-TSS (NM_001077269)	33	NM_001077269	7456	Hs.128067	NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
26.925	chr12	6482459	6482958	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	1682	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
1.07349-17	chr16	67062806	67063305	+	0	NA	promoter-TSS (NM_022845)	promoter-TSS (NM_022845)	5	NM_022845	865	Hs.460988	NM_001755	ENSG00000067955	CBFB	PEBP2B	core-binding factor beta subunit	protein-coding
3.09804-4	chr13	52389379	52389878	+	0	NA	non-coding (NR_027047, exon 5 of 5)	non-coding (NR_027047, exon 5 of 5)	-11330	NM_024705	79758	Hs.266728	NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
17.122-5	chr8	18365609	18366108	+	0	NA	Intergenic	Intergenic	117103	NM_000015	10	Hs.2	NM_000015	ENSG00000156006	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2	protein-coding
6.94649-9	chr11	45411870	45412369	+	0	NA	Intergenic	Intergenic	19171	NR_122071	399886	Hs.559970	NR_122071	ENSG00000255267	LOC399886	-	uncharacterized LOC399886	ncRNA
9.1364-23	chr1	212685635	212686134	+	0	NA	Intergenic	Intergenic	-33152	NR_125985	101929565		NR_125985	ENSG00000228067	LINC01740	-	long intergenic non-protein coding RNA 1740	ncRNA
0.296531-24	chr5	108084626	108085125	+	0	NA	intron (NM_001308038, intron 1 of 7)	CpG	247	NM_001308038	2241	Hs.107418	NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
0.109954-20	chrX	115126091	115126590	+	0	NA	Intergenic	Intergenic	-40896	NR_130730	642776	Hs.634316	NR_130730	ENSG00000235244	DANT2	-	DXZ4 associated non-coding transcript 2, distal	ncRNA
2.76544-2	chr11	67159117	67159616	+	0	NA	promoter-TSS (NM_004584)	promoter-TSS (NM_004584)	-57	NM_004584	5883	Hs.655354	NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
20.2045-2	chr18	76166967	76167466	+	0	NA	Intergenic	Intergenic	-461533	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
8.47712-3	chr3	160603164	160603918	+	0	NA	intron (NR_134243, intron 2 of 5)	L1PA7|LINE|L1	15155	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
0.540393-51	chr3	39269618	39270117	+	0	NA	Intergenic	SVA_D|Other|Other	-35780	NM_001198621	165904	Hs.447868	NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
3.91474-2	chr8	17658789	17659288	+	0	NA	promoter-TSS (NM_001001925)	promoter-TSS (NM_001001925)	-612	NM_001001925	57509	Hs.7946	NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
0.47692-5	chr5	91925	92424	+	0	NA	Intergenic	CpG	-48199	NM_052909	153478	Hs.535800	NM_052909	ENSG00000153404	PLEKHG4B	-	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
16.1261	chr5	108682850	108683349	+	0	NA	intron (NM_014819, intron 7 of 9)	LTR41|LTR|ERVL	62576	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
0.91515-4	chr7	85379649	85380148	+	0	NA	Intergenic	L1PA7|LINE|L1	329460	NR_134240	105375380	Hs.679608	NR_134240	ENSG00000225128	LINC00972	-	long intergenic non-protein coding RNA 972	ncRNA
11.4874	chr16	31469219	31469718	+	0	NA	promoter-TSS (NM_001288767)	promoter-TSS (NM_001288767)	-126	NM_001288767	79798	Hs.732945	NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
1.36083-11	chr9	135360722	135361221	+	0	NA	intron (NM_207417, intron 2 of 6)	intron (NM_207417, intron 2 of 6)	75388	NM_207417	389799	Hs.201709	NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
2.43364-6	chr2	138830208	138830707	+	0	NA	Intergenic	Intergenic	-28997	NR_135526	105373635		NR_135526	ENSG00000224231	LINC01832	-	long intergenic non-protein coding RNA 1832	ncRNA
0.861861-10	chr17	75242984	75243483	+	0	NA	Intergenic	CpG	-34259	NM_001113491	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
3.29754-16	chr12	125162308	125162807	+	0	NA	Intergenic	Intergenic	-110547	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
0.979971-18	chr5	783188	783687	+	0	NA	Intergenic	Intergenic	67664	NM_024786	79844	Hs.654874	NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
0.123337-38	chr1	37301714	37302213	+	0	NA	intron (NM_000831, intron 10 of 15)	intron (NM_000831, intron 10 of 15)	197881	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding
10.7212-2	chr12	90969718	90970217	+	0	NA	Intergenic	L1MA3|LINE|L1	282872	NR_135018	105369893	Hs.577777	NR_135018		LOC105369893	-	uncharacterized LOC105369893	ncRNA
2.54145-10	chr2	232574092	232574591	+	0	NA	intron (NM_002823, intron 1 of 4)	CpG-16069	1106	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding
3.16053-2	chr15	76136575	76137074	+	0	NA	exon (NM_001145335, exon 1 of 13)	exon (NM_001145335, exon 1 of 13)	439	NM_001145335	92912	Hs.23033	NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
5.52842-5	chr16	84538348	84538847	+	0	NA	promoter-TSS (NM_020947)	promoter-TSS (NM_020947)	-309	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
0.856568-15	chr17	55520458	55520957	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	80251	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
4.06714	chr11	111601747	111602246	+	0	NA	intron (NM_181699, intron 15 of 15)	intron (NM_181699, intron 15 of 15)	35173	NM_001177562	5519	Hs.269128	NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
7.01147-17	chr13	113870416	113870915	+	0	NA	intron (NM_001008895, intron 2 of 19)	intron (NM_001008895, intron 2 of 19)	6846	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
0.296531-18	chr8	41754744	41755243	+	0	NA	promoter-TSS (NM_001142446)	promoter-TSS (NM_001142446)	-713	NM_001142446	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
5.37602	chr8	2209000	2209499	+	0	NA	Intergenic	Intergenic	184580	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
0.419142-26	chr11	113160184	113160683	+	0	NA	Intergenic	Intergenic	-15810	NR_034101	100288346	Hs.661826	NR_034101	ENSG00000227487	NCAM1-AS1	-	NCAM1 antisense RNA1	ncRNA
0.209071-4	chr3	11815698	11816197	+	0	NA	Intergenic	Intergenic	-53705	NM_014667	9686	Hs.740389	NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
0.0612309-18	chr7	95313276	95313775	+	0	NA	Intergenic	Intergenic	-87600	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	pyruvate dehydrogenase kinase 4	protein-coding
2.18963-32	chr22	25093697	25094196	+	0	NA	Intergenic	Intergenic	-38832	NR_024593	646074	Hs.531306	NM_001025230		POM121L10P	-	POM121 transmembrane nucleoporin like 10, pseudogene	pseudo
2.32844	chrX	77021104	77021603	+	0	NA	intron (NM_138270, intron 1 of 33)	SVA_D|Other|Other	20402	NM_138270	546	Hs.533526	NM_000489	ENSG00000085224	ATRX	ATR2|JMS|MRX52|MRXHF1|RAD54|RAD54L|SFM1|SHS|XH2|XNP|ZNF-HX	ATRX, chromatin remodeler	protein-coding
22.8819	chr2	8274658	8275157	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-157962	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
0.75204-4	chr19	12674798	12675297	+	0	NA	Intergenic	Intergenic	-12691	NM_144976	163050	Hs.655615	NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
2.29148-21	chr2	38763115	38763614	+	0	NA	Intergenic	CpG	-20482	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
0.222764-11	chr14	37132435	37133275	+	0	NA	intron (NM_006194, intron 3 of 4)	intron (NM_006194, intron 3 of 4)	6082	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
18.6967-3	chr3	188366617	188367116	+	0	NA	intron (NM_001167671, intron 6 of 10)	intron (NM_001167671, intron 6 of 10)	-39703	NR_029502	407020		NR_029502	ENSG00000207651	MIR28	MIRN28|hsa-mir-28|miR-28	microRNA 28	ncRNA
0.141246-20	chr20	304915	305414	+	0	NA	intron (NR_109990, intron 1 of 2)	CpG	732	NR_109990	100507459	Hs.659689	NR_109990		NRSN2-AS1	-	NRSN2 antisense RNA 1	ncRNA
1.99283-12	chr5	171969516	171970015	+	0	NA	Intergenic	Intergenic	-88238	NM_001017995	285590	Hs.285666	NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
3.46787-5	chr11	63952692	63953191	+	0	NA	promoter-TSS (NM_006819)	promoter-TSS (NM_006819)	197	NM_001282652	10963	Hs.337295	NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
7.35182	chr18	67068371	67068870	+	0	NA	intron (NM_152721, intron 1 of 7)	CpG	336	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
16.7985	chr12	22852481	22852980	+	0	NA	Intergenic	Intergenic	74654	NM_001039481	55500	Hs.29464	NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
18.7615-7	chr6	101680788	101681287	+	0	NA	Intergenic	Intergenic	-165824	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
0.172766-32	chr1	185782469	185782968	+	0	NA	intron (NM_031935, intron 1 of 106)	intron (NM_031935, intron 1 of 106)	79035	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
2.25483-3	chr1	845946	846445	+	0	NA	Intergenic	Intergenic	8877	NR_026874	100130417	Hs.200644	NM_175912	ENSG00000223764	LOC100130417	-	uncharacterized LOC100130417	ncRNA
10-8	chr4	156588712	156589211	+	0	NA	5' UTR (NM_001130684, exon 1 of 9)	5' UTR (NM_001130684, exon 1 of 9)	146	NM_001130684	2982	Hs.24258	NM_000856	ENSG00000164116	GUCY1A3	GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A1|MYMY6	guanylate cyclase 1 soluble subunit alpha	protein-coding
3.75718-11	chr1	143385758	143386257	+	0	NA	Intergenic	MER61C|LTR|ERV1	-183768	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
7.05534-9	chr1	48640324	48640823	+	0	NA	intron (NR_026749, intron 3 of 9)	SVA_B|Other|Other	7527	NR_026749	391037	Hs.585393	NR_026749		SKINT1L	BTN12|SKINT1|SKINTL|SKINTP	Skint1 like (pseudogene)	pseudo
21.831-3	chr5	66943857	66944356	+	0	NA	Intergenic	Intergenic	-144935	NR_130779	101928858	Hs.334066	NR_130779	ENSG00000249364	LOC101928858	-	uncharacterized LOC101928858	ncRNA
2.96709-10	chr12	126404616	126405115	+	0	NA	Intergenic	Intergenic	63055	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LINC00939	-	long intergenic non-protein coding RNA 939	ncRNA
3.28827-8	chr9	130797374	130797873	+	0	NA	Intergenic	Intergenic	31976	NM_197956	203245	Hs.373606	NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
0.629839-21	chr10	72489447	72489946	+	0	NA	intron (NM_080722, intron 5 of 21)	intron (NM_080722, intron 5 of 21)	52633	NR_134534	219793	Hs.386698	NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
1.59894-14	chr3	122101825	122102324	+	0	NA	promoter-TSS (NM_001017928)	promoter-TSS (NM_001017928)	4	NM_001308326	131076	Hs.220594	NM_001017928	ENSG00000160124	CCDC58	-	coiled-coil domain containing 58	protein-coding
2.84833-5	chr9	129263053	129263552	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-90519	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
0.496351-11	chr7_gl000195_random	33741	34240	+	0	NA	Intergenic	LTR76|LTR|ERV1	32050	NM_001322975	102723360	Hs.743984	NM_001322975	ENSG00000277991	LOC102723360	-	uncharacterized LOC102723360	protein-coding
6.55608-2	chr8	141796041	141796540	+	0	NA	intron (NM_001316342, intron 12 of 32)	intron (NM_001316342, intron 12 of 32)	-150644	NM_001164623	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
3.06273-11	chr1	27324074	27324573	+	0	NA	intron (NM_001013642, intron 1 of 1)	intron (NM_001013642, intron 1 of 1)	4128	NM_001013642	388610	Hs.355747	NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP	TMF1-regulated nuclear protein 1	protein-coding
46.3827-2	chr3	159689088	159689587	+	0	NA	intron (NR_108088, intron 9 of 9)	intron (NR_108088, intron 9 of 9)	-17286	NM_000882	3592	Hs.673	NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
9.43095-7	chr9	119675726	119676225	+	0	NA	intron (NM_014010, intron 9 of 21)	UCON11|Unknown|Unknown	226394	NM_012210	22954	Hs.591910	NM_012210	ENSG00000119401	TRIM32	BBS11|HT2A|LGMD2H|TATIP	tripartite motif containing 32	protein-coding
0.254883-36	chr9	115095065	115095564	+	0	NA	promoter-TSS (NM_001244898)	promoter-TSS (NM_001244898)	-8	NM_001244898	9991	Hs.269988	NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
12.84-5	chr6	17202768	17203267	+	0	NA	Intergenic	Intergenic	-78792	NM_001143942	221662	Hs.519904	NM_153020	ENSG00000112183	RBM24	RNPC6|dJ259A10.1	RNA binding motif protein 24	protein-coding
0.366845	chr11	33061472	33061971	+	0	NA	5' UTR (NM_001145541, exon 1 of 10)	5' UTR (NM_001145541, exon 1 of 10)	160	NM_001145541	55346	Hs.655341	NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding
8.41638-8	chr22	24811895	24812394	+	0	NA	3' UTR (NM_001254732, exon 15 of 15)	3' UTR (NM_001254732, exon 15 of 15)	-7421	NM_001278500	135	Hs.197029	NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
5.22879-10	chr3	193311409	193311908	+	0	NA	intron (NM_130837, intron 1 of 30)	intron (NM_130837, intron 1 of 30)	725	NM_130836	4976	Hs.594504	NM_015560	ENSG00000198836	OPA1	BERHS|MGM1|MTDPS14|NPG|NTG|largeG	OPA1, mitochondrial dynamin like GTPase	protein-coding
0.190881-15	chr1	25020745	25021244	+	0	NA	Intergenic	MIR|SINE|MIR	-50766	NM_013943	25932	Hs.440544	NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
10.4096-2	chr1	172888881	172889380	+	0	NA	Intergenic	L2|LINE|L2	130973	NM_005092	8995	Hs.248197	NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	tumor necrosis factor superfamily member 18	protein-coding
20.7109	chr7	4971487	4971986	+	0	NA	intron (NM_198403, intron 1 of 6)	intron (NM_198403, intron 1 of 6)	27108	NM_001100600	221938	Hs.558694	NM_198403	ENSG00000136297	MMD2	PAQR10	monocyte to macrophage differentiation associated 2	protein-coding
14.8812-2	chr17	6455177	6455676	+	0	NA	intron (NM_001165966, intron 1 of 18)	intron (NM_001165966, intron 1 of 18)	4451	NM_031220	83394	Hs.183983	NM_031220	ENSG00000091622	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
13.6856-3	chr2	121138029	121138528	+	0	NA	Intergenic	Intergenic	34560	NM_002193	3625	Hs.1735	NM_002193	ENSG00000163083	INHBB	-	inhibin beta B subunit	protein-coding
0.136762-11	chr8	7085448	7085947	+	0	NA	Intergenic	CpG	35317	NR_027000	349196	Hs.559040	NM_001025473		LINC00965	-	long intergenic non-protein coding RNA 965	ncRNA
14.1908	chr6	710823	711322	+	0	NA	Intergenic	CpG	-17931	NM_018303	55770	Hs.484412	NM_018303	ENSG00000112685	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
1.75874-20	chr17	44269887	44270386	+	0	NA	promoter-TSS (NM_001193466)	promoter-TSS (NM_001193466)	30	NM_001193466	284058	Hs.648744	NM_015443	ENSG00000120071	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
33.439	chr2	232112776	232113275	+	0	NA	intron (NM_001271466, intron 8 of 24)	intron (NM_001271466, intron 8 of 24)	42112	NM_001271466	80210	Hs.162411	NM_025139	ENSG00000135931	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
0.0217692-12	chr16	85768689	85769188	+	0	NA	intron (NM_206967, intron 1 of 3)	intron (NM_206967, intron 1 of 3)	6368	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
0.846002-3	chr17	7728499	7728998	+	0	NA	intron (NM_020877, intron 77 of 85)	intron (NM_020877, intron 77 of 85)	-14487	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine demethylase 6B	protein-coding
0.579919-6	chr1	145028039	145028538	+	0	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	11675	NR_144516	100996724	Hs.682380	NR_144516		LOC100996724	-	phosphodiesterase 4D interacting protein-like	pseudo
0.996329	chr20	43280100	43280599	+	0	NA	promoter-TSS (NM_001322051)	promoter-TSS (NM_001322051)	50	NR_136160	100	Hs.654536	NM_000022	ENSG00000196839	ADA	-	adenosine deaminase	protein-coding
1.63043-6	chr1	20685335	20685834	+	0	NA	TTS (NR_033887)	TTS (NR_033887)	68172	NM_001039500	127731	Hs.205178	NM_144623	ENSG00000158816	VWA5B1	-	von Willebrand factor A domain containing 5B1	protein-coding
1.76526	chr15	89447904	89448403	+	0	NA	intron (NM_001114614, intron 5 of 6)	intron (NM_001114614, intron 5 of 6)	7840	NM_001310321	4240	Hs.3745	NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule-EGF factor 8 protein	protein-coding
7.16699-2	chr17	70262142	70262641	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-76561	NR_135222	146795	Hs.651743	NR_135222	ENSG00000264026	LINC02003	-	long intergenic non-protein coding RNA 2003	ncRNA
9.39302-3	chr8	144821989	144822488	+	0	NA	intron (NR_033849, intron 3 of 3)	CpG-26161	5928	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	onco-lncRNA-3	FAM83H antisense RNA 1 (head to head)	ncRNA
3.05395-17	chr11	118889049	118889942	+	0	NA	promoter-TSS (NM_001028)	promoter-TSS (NM_001028)	-159	NR_037429	100500840		NR_037429	ENSG00000196655	MIR3656	mir-3656	microRNA 3656	ncRNA
1.34896-6	chr2	7774379	7774878	+	0	NA	Intergenic	Intergenic	213236	NR_038432	100506274	Hs.177930	NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
2.44125-2	chr20	43956984	43957483	+	0	NA	intron (NM_002999, intron 4 of 4)	intron (NM_002999, intron 4 of 4)	19831	NM_002999	6385	Hs.632267	NM_002999	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding
18.3863-4	chr20	11549704	11550203	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-295922	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
1.89767-3	chr8	37785744	37786243	+	0	NA	Intergenic	SVA_D|Other|Other	11654	NM_152413	137362	Hs.380740	NM_152413	ENSG00000169154	GOT1L1	-	glutamic-oxaloacetic transaminase 1-like 1	protein-coding
1.4813-12	chrX	108976367	108976866	+	0	NA	promoter-TSS (NM_004458)	promoter-TSS (NM_004458)	5	NM_004458	2182	Hs.268785	NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
0.540393-3	chr11	1848323	1848822	+	0	NA	Intergenic	Intergenic	-6968	NM_001290334	90019	Hs.161031	NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
2.68411-4	chr10	43832759	43833258	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-34084	NM_173160	53828	Hs.130497	NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
0.963675-3	chr12	39314831	39315330	+	0	NA	Intergenic	Intergenic	-15660	NM_153634	144402	Hs.40910	NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
2.47184-18	chr2	231770195	231770694	+	0	NA	Intergenic	Intergenic	19183	NR_038238	151484	Hs.559309	NR_038238	ENSG00000232520	LOC151484	-	uncharacterized LOC151484	ncRNA
11.2033	chr1	65352523	65353022	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	79480	NM_002227	3716	Hs.207538	NM_002227	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
0.91515-24	chr12	69544787	69545286	+	0	NA	Intergenic	Intergenic	-88281	NM_001300947	11052	Hs.369606	NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
0.447935-15	chr1	115631918	115632417	+	0	NA	promoter-TSS (NM_001308316)	promoter-TSS (NM_001308316)	-46	NM_005725	10100	Hs.310458	NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
0.438316-5	chr5	127211177	127211676	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	172345	NM_001317938	728586	Hs.582532	NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
1.19186-35	chr14	103059240	103059739	+	0	NA	exon (NM_015156, exon 1 of 12)	exon (NM_015156, exon 1 of 12)	493	NM_015156	23186	Hs.510521	NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
0.809219-22	chr10	102288514	102289013	+	0	NA	intron (NM_001284368, intron 2 of 4)	intron (NM_001284368, intron 2 of 4)	917	NM_005004	4714	Hs.523215	NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
18.3863	chr9	108822121	108822620	+	0	NA	Intergenic	MER52A|LTR|ERV1	365564	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
1.02923-21	chr7	116964349	116964848	+	0	NA	Intergenic	CpG-24814	-1255	NR_024047	7472	Hs.567356	NM_003391	ENSG00000105989	WNT2	INT1L1|IRP	Wnt family member 2	protein-coding
3.36299-7	chr12	58897925	58898424	+	0	NA	Intergenic	Intergenic	-87310	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
3.6251	chr9	140089997	140090496	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	4917	NM_001128228	286262	Hs.323445	NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
1.95179-3	chrX	18945579	18946078	+	0	NA	intron (NM_000292, intron 13 of 32)	intron (NM_000292, intron 13 of 32)	37414	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
0.0656377-16	chr13	114533192	114533691	+	0	NA	intron (NM_000820, intron 10 of 14)	intron (NM_000820, intron 10 of 14)	14858	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
1.24939-10	chr7	157587880	157588379	+	0	NA	intron (NM_130843, intron 11 of 21)	intron (NM_130843, intron 11 of 21)	-59148	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
0.985417-10	chr7	151553002	151553501	+	0	NA	intron (NM_016203, intron 1 of 15)	MIRb|SINE|MIR	-20876	NR_038926	100505483	Hs.649054	NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
5.98599-6	chrX	153871957	153872456	+	0	NA	Intergenic	CpG	9647	NM_020994	30848	Hs.87225	NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
4.08935-8	chr4	100871444	100871943	+	0	NA	promoter-TSS (NM_002106)	promoter-TSS (NM_002106)	42	NR_125923	256880	Hs.448554	NR_002799	ENSG00000245322	LOC256880	-	uncharacterized LOC256880	ncRNA
0.604807-3	chr6	42715041	42715540	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	594	NM_001318819	23506	Hs.658033	NM_015349	ENSG00000112624	GLTSCR1L	KIAA0240	GLTSCR1 like	protein-coding
0.525663-7	chr2	28601121	28601620	+	0	NA	Intergenic	Intergenic	-14409	NM_005253	2355	Hs.220971	NM_005253	ENSG00000075426	FOSL2	FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
0.101054-17	chr14	53619857	53620356	+	0	NA	promoter-TSS (NM_030637)	promoter-TSS (NM_030637)	34	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
1.20904-18	chr12	92098155	92098654	+	0	NA	Intergenic	Intergenic	437085	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
3.30683-6	chr5	36398190	36398689	+	0	NA	Intergenic	Intergenic	-96428	NM_001161429	202151	Hs.199777	NM_145000	ENSG00000164188	RANBP3L	-	RAN binding protein 3 like	protein-coding
3.1158-11	chr17	26930469	26930968	+	0	NA	intron (NR_040012, intron 2 of 2)	SVA_D|Other|Other	4567	NR_040012	100506436	Hs.743630	NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
20.4964-6	chr16	10716208	10716707	+	0	NA	Intergenic	Intergenic	-41884	NM_001424	2013	Hs.531561	NM_001424	ENSG00000213853	EMP2	XMP	epithelial membrane protein 2	protein-coding
20.0877	chr1	245408455	245408954	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	90417	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
1.03474-5	chr11	20260182	20260681	+	0	NA	Intergenic	L1M1|LINE|L1	-78561	NM_001029865	120237	Hs.558604	NM_001029865	ENSG00000109851	DBX1	-	developing brain homeobox 1	protein-coding
0.181814-26	chr4	8165813	8166312	+	0	NA	Intergenic	Intergenic	-5503	NM_001130086	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
0.629839-12	chr1	6579914	6580413	+	0	NA	promoter-TSS (NM_198681)	promoter-TSS (NM_198681)	-42	NM_198681	57449	Hs.284232	NM_020631	ENSG00000171680	PLEKHG5	CMTRIC|DSMA4|GEF720|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
0.070049-77	chr14	95999602	96000101	+	0	NA	non-coding (NR_003138, exon 1 of 1)	non-coding (NR_003138, exon 1 of 1)	115	NR_003002	677768	Hs.448753	NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
8.09668	chr15	71927129	71927628	+	0	NA	intron (NM_001286429, intron 1 of 11)	intron (NM_001286429, intron 1 of 11)	56500	NR_120346	101929173	Hs.680593	NR_120346		THSD4-AS2	-	THSD4 antisense RNA 2	ncRNA
5.25784	chr1	53928288	53928787	+	0	NA	intron (NM_033067, intron 2 of 3)	intron (NM_033067, intron 2 of 3)	3465	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
5.0724-2	chr1	155579349	155580160	+	0	NA	promoter-TSS (NM_001256532)	promoter-TSS (NM_001256532)	-207	NM_001256532	55154	Hs.656547	NM_018116	ENSG00000125459	MSTO1	LST005|MST	misato 1, mitochondrial distribution and morphology regulator	protein-coding
0.80399-10	chr10	135354961	135355460	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	14343	NM_000773	1571	Hs.12907	NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450 family 2 subfamily E member 1	protein-coding
9.17215-19	chr4	145709239	145709738	+	0	NA	Intergenic	Intergenic	-142317	NR_037595	646576	Hs.632595	NR_037595	ENSG00000248890	HHIP-AS1	-	HHIP antisense RNA 1	ncRNA
0.310503-31	chr2	170681208	170681707	+	0	NA	promoter-TSS (NM_001293186)	promoter-TSS (NM_001293186)	-16	NM_014168	29081	Hs.470553	NM_014168	ENSG00000138382	METTL5	HSPC133	methyltransferase like 5	protein-coding
0.00434512-29	chr14	105642705	105643204	+	0	NA	exon (NM_177533, exon 4 of 5)	exon (NM_177533, exon 4 of 5)	4706	NM_177533	256281	Hs.526432	NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
7.74691-5	chr5	12095940	12096439	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-192034	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
3.48722-7	chr13	51543683	51544182	+	0	NA	intron (NM_001142279, intron 9 of 9)	intron (NM_001142279, intron 9 of 9)	-59084	NR_046552	100874255	Hs.741501	NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
8.9279-7	chr2	177676511	177677010	+	0	NA	Intergenic	Intergenic	174278	NR_110599	102724224	Hs.663125	NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
5.83359-29	chr6	55443689	55444188	+	0	NA	promoter-TSS (NM_001287753)	promoter-TSS (NM_001287753)	74	NR_109869	54511	Hs.147054	NM_019036	ENSG00000146151	HMGCLL1	bA418P12.1|er-cHL	3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1	protein-coding
9.82967-12	chr16	75466781	75467643	+	0	NA	exon (NM_006324, exon 1 of 7)	exon (NM_006324, exon 1 of 7)	175	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
0.213631-25	chr11	33182648	33183147	+	0	NA	promoter-TSS (NR_034027)	promoter-TSS (NR_034027)	140	NM_001033505	1479	Hs.44402	NM_001326	ENSG00000176102	CSTF3	CSTF-77	cleavage stimulation factor subunit 3	protein-coding
3.45823-2	chr17	25856224	25856723	+	0	NA	intron (NM_014238, intron 2 of 20)	L1ME4a|LINE|L1	57437	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
0.11441-22	chr12	119422104	119422603	+	0	NA	intron (NM_194286, intron 1 of 12)	intron (NM_194286, intron 1 of 12)	3053	NM_194286	84530	Hs.744964	NM_194286	ENSG00000139767	SRRM4	KIAA1853|MU-MB-2.76|nSR100	serine/arginine repetitive matrix 4	protein-coding
13.6653	chr18	33647313	33647812	+	0	NA	promoter-TSS (NM_001303411)	promoter-TSS (NM_001303411)	-5	NM_001303413	55197	Hs.464912	NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
10.8991-2	chr14	77344171	77344670	+	0	NA	Intergenic	L2a|LINE|L2	51695	NM_194287	145497	Hs.147276	NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
21.0237-2	chr16	1820292	1820791	+	0	NA	TTS (NM_015133)	TTS (NM_015133)	1169	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
0.352691-17	chr12	42877718	42878217	+	0	NA	promoter-TSS (NM_001144881)	promoter-TSS (NM_001144881)	-170	NM_001144882	144165	Hs.524348	NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
0.731433-4	chr11	34881988	34882487	+	0	NA	Intergenic	Intergenic	-55440	NM_001135024	8050	Hs.502315	NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding
7.93174-8	chr4	167203058	167203557	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	408897	NM_012464	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
7.79892-2	chr3	126183809	126184308	+	0	NA	intron (NM_001040653, intron 5 of 5)	intron (NM_001040653, intron 5 of 5)	10704	NR_104249	79364	Hs.440049	NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
2.75724-7	chr13	79820501	79821000	+	0	NA	Intergenic	Intergenic	159606	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
7.61954-13	chr8	63602546	63603045	+	0	NA	intron (NR_130764, intron 3 of 6)	intron (NR_130764, intron 3 of 6)	-287625	NR_027378	643763	Hs.491856	NM_001039769	ENSG00000274956	UG0898H09	-	uncharacterized LOC643763	ncRNA
0.660068-9	chr22	39916180	39916679	+	0	NA	promoter-TSS (NM_001675)	promoter-TSS (NM_001675)	-135	NM_001675	468	Hs.496487	NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
1.43876-8	chr11	123375863	123376362	+	0	NA	Intergenic	Intergenic	-4475	NM_001330396	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
1.19758-5	chr1	109235248	109235747	+	0	NA	intron (NM_018061, intron 1 of 5)	intron (NM_018061, intron 1 of 5)	562	NR_037185	55119	Hs.342307	NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
10.8355	chr20	1262137	1262636	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	15451	NM_001318234	9751	Hs.323833	NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
2.32844-10	chr7	89841055	89841554	+	0	NA	promoter-TSS (NR_110029)	promoter-TSS (NR_110029)	130	NM_001040665	261729	Hs.489051	NM_152999	ENSG00000157214	STEAP2	IPCA1|PCANAP1|PUMPCn|STAMP1|STMP	STEAP2 metalloreductase	protein-coding
1.4813-2	chr17	78193920	78194419	+	0	NA	promoter-TSS (NM_001166349)	promoter-TSS (NM_001166349)	30	NM_000199	6448	Hs.31074	NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
2.35824	chr13	47126935	47127434	+	0	NA	promoter-TSS (NM_015116)	promoter-TSS (NM_015116)	-112	NM_015116	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
1.20904-16	chr7	117469393	117469892	+	0	NA	intron (NM_033427, intron 2 of 22)	intron (NM_033427, intron 2 of 22)	43919	NM_033427	83992	Hs.592285	NM_033427	ENSG00000077063	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
16.1798-10	chr4	140684310	140684809	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	97637	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
12.8819-3	chr17	20349609	20350108	+	0	NA	intron (NR_144552, intron 4 of 4)	intron (NR_144552, intron 4 of 4)	9721	NR_144552	339256	Hs.185235	NR_144552		NOS2P3	-	nitric oxide synthase 2 pseudogene 3	pseudo
0.296531-26	chr8	10818589	10819088	+	0	NA	intron (NM_173683, intron 1 of 2)	L2|LINE|L2	73974	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
0.25028-5	chr3	195634184	195634683	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	1447	NM_005781	10188	Hs.518513	NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
1.56145-7	chr1	41831980	41832479	+	0	NA	intron (NM_001291281, intron 1 of 2)	CpG	4626	NM_001291281	100132074	Hs.559677	NM_001291281		FOXO6	-	forkhead box O6	protein-coding
1.12946-10	chr12	48238296	48238795	+	0	NA	exon (NM_000376, exon 10 of 10)	exon (NM_000376, exon 10 of 10)	-24782	NM_015401	51564	Hs.200063	NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
0.0921731-36	chr15	69366704	69367203	+	0	NA	intron (NR_031680, intron 3 of 4)	intron (NR_031680, intron 3 of 4)	-6237	NR_026949	283673	Hs.177927	NM_173610	ENSG00000212766	EWSAT1	LINC00277|NCRNA00277|TMEM84	Ewing sarcoma associated transcript 1	ncRNA
3.50665	chr2	87456183	87456682	+	0	NA	Intergenic	Intergenic	34523	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
1.81115-18	chr10	106082027	106082526	+	0	NA	promoter-TSS (NR_120622)	promoter-TSS (NR_120622)	-846	NR_120622	101927472	Hs.670333	NR_120622		LOC101927472	-	uncharacterized LOC101927472	ncRNA
0.710923-2	chr21	43429838	43430337	+	0	NA	intron (NR_119384, intron 1 of 1)	CpG	409	NM_001098403	49854	Hs.434947	NM_020727	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
1.37272-17	chr9	130565054	130565553	+	0	NA	promoter-TSS (NM_001018078)	promoter-TSS (NM_001018078)	-157	NM_001018078	2356	Hs.335084	NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
3.29754-18	chr8	135493341	135493840	+	0	NA	intron (NM_001174158, intron 13 of 13)	intron (NM_001174158, intron 13 of 13)	-116724	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
1.81115-13	chr17	62222954	62223889	+	0	NA	promoter-TSS (NR_004380)	promoter-TSS (NR_004380)	-17	NR_004380	692227		NR_004380	ENSG00000199753	SNORD104	U104	small nucleolar RNA, C/D box 104	snoRNA
4.01209-14	chr3	123371784	123372283	+	0	NA	intron (NM_053027, intron 24 of 32)	intron (NM_053027, intron 24 of 32)	-32579	NM_053031	4638	Hs.477375	NM_005965	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
9.914-8	chr1	62824592	62825091	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-39756	NM_001320269	163782	Hs.283398	NM_181712	ENSG00000132854	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
1.53663-43	chr3	112990026	112990908	+	0	NA	intron (NM_001301861, intron 6 of 19)	Arthur1A|DNA|hAT-Tip100	59123	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
3.22393-7	chr3	66533955	66534454	+	0	NA	intron (NM_015541, intron 1 of 18)	intron (NM_015541, intron 1 of 18)	16641	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
0.338583-2	chr10	122215820	122216319	+	0	NA	promoter-TSS (NM_001030059)	promoter-TSS (NM_001030059)	-397	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PLPP4	DPPL2|PPAPDC1|PPAPDC1A	phospholipid phosphatase 4	protein-coding
0.584886-11	chr2	226174285	226174784	+	0	NA	Intergenic	Intergenic	-91068	NM_020864	57624	Hs.224409	NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
9.62574-29	chr11	128049148	128049647	+	0	NA	Intergenic	Intergenic	342808	NM_001162422	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
0.409586-12	chr2	59403799	59404298	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-40795	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
1.36677-16	chr6	24856143	24856642	+	0	NA	intron (NM_001346031, intron 8 of 21)	intron (NM_001346031, intron 8 of 21)	21201	NM_015864	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65 member B	protein-coding
32.5493	chr8	49730664	49731609	+	0	NA	Intergenic	Intergenic	-83266	NM_001142857	79645	Hs.23245	NM_024593	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
1.35489-35	chr17	48982643	48983142	+	0	NA	Intergenic	Intergenic	-37553	NM_001243877	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
0.0921731-40	chr4	187112226	187112725	+	0	NA	promoter-TSS (NM_207352)	promoter-TSS (NM_207352)	169	NR_046264	651430	Hs.727796	NR_046264	ENSG00000279943	FLJ38576	-	uncharacterized LOC651430	ncRNA
21.0403-3	chr11	133476019	133476518	+	0	NA	Intergenic	Intergenic	-73761	NM_001319104	4978	Hs.4817	NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
16.4207-2	chr12	45733750	45734249	+	0	NA	intron (NM_001025356, intron 3 of 19)	intron (NM_001025356, intron 3 of 19)	47533	NM_001142678	196527	Hs.505339	NM_001025356	ENSG00000177119	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
0.579919-12	chr11	61716725	61717224	+	0	NA	promoter-TSS (NR_134580)	promoter-TSS (NR_134580)	-382	NR_134580	7439	Hs.524910	NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
8.29738-11	chr8	39010738	39011237	+	0	NA	intron (NM_145004, intron 6 of 24)	LTR16A2|LTR|ERVL	45939	NM_145004	203102	Hs.521545	NM_145004	ENSG00000197140	ADAM32	-	ADAM metallopeptidase domain 32	protein-coding
0.296531-29	chr14	66306861	66307360	+	0	NA	Intergenic	MIR|SINE|MIR	369290	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
2.74088-9	chr19	50004805	50005304	+	0	NA	promoter-TSS (NR_029703)	promoter-TSS (NR_029703)	-929	NR_029703	406942		NR_029703	ENSG00000207782	MIR150	MIRN150|miRNA150|mir-150	microRNA 150	ncRNA
18.4466-2	chr4	53165271	53165770	+	0	NA	Intergenic	Intergenic	248023	NR_123728	132671	Hs.527090	NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
3.30683-9	chr17	959980	960479	+	0	NA	intron (NM_001322841, intron 13 of 22)	intron (NM_001322841, intron 13 of 22)	22157	NM_001282149	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
8.72895	chr11	121593076	121593575	+	0	NA	Intergenic	Intergenic	270413	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
9.17215-13	chr2	41943563	41944062	+	0	NA	Intergenic	L2a|LINE|L2	-160883	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
2.49492	chr9	77800404	77800903	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	97255	NM_012383	26578	Hs.494192	NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
0.390538-26	chr2	2234082	2234581	+	0	NA	intron (NM_001329845, intron 2 of 24)	intron (NM_001329845, intron 2 of 24)	-88673	NR_024468	730811	Hs.629472	NR_024468	ENSG00000225619	MYT1L-AS1	-	MYT1L antisense RNA 1	ncRNA
5.98599-9	chr7	78524262	78524761	+	0	NA	intron (NM_001301128, intron 2 of 20)	MSTC|LTR|ERVL-MaLR	-113793	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
1.50581-33	chr5	127873738	127874237	+	0	NA	promoter-TSS (NM_001999)	promoter-TSS (NM_001999)	-252	NM_001999	2201	Hs.519294	NM_001999	ENSG00000138829	FBN2	CCA|DA9|EOMD	fibrillin 2	protein-coding
0.486625-23	chr5	14305113	14305612	+	0	NA	intron (NM_007118, intron 8 of 56)	MIR|SINE|MIR	161551	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
1.79142-7	chr14	74319152	74319651	+	0	NA	intron (NM_152444, intron 1 of 9)	intron (NM_152444, intron 1 of 9)	780	NM_152444	145482	Hs.632344	NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
11.1182-3	chr1	36396200	36396699	+	0	NA	promoter-TSS (NM_177422)	promoter-TSS (NM_177422)	-234	NM_024852	192669	Hs.657659	NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute 3, RISC catalytic component	protein-coding
11.798	chr8	38033833	38034770	+	0	NA	promoter-TSS (NR_045493)	promoter-TSS (NR_045493)	-53	NM_014462	27257	Hs.425311	NM_014462	ENSG00000175324	LSM1	CASM|YJL124C	LSM1 homolog, mRNA degradation associated	protein-coding
0.685421	chr2	197046154	197046653	+	0	NA	Intergenic	Intergenic	-10067	NM_004226	9262	Hs.88297	NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
2.38824-7	chr17	55994463	55994962	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	-13962	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
1.50581-27	chr2	158354068	158354567	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-53713	NM_004288	9595	Hs.270	NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
3.34419-8	chr5	163010010	163010509	+	0	NA	Intergenic	SVA_B|Other|Other	77725	NM_013283	27430	Hs.54642	NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2B	protein-coding
3.99027-12	chr1	6085868	6086367	+	0	NA	promoter-TSS (NM_003636)	promoter-TSS (NM_003636)	44	NM_003636	8514	Hs.440497	NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
27.9317	chr8	141599121	141599620	+	0	NA	intron (NM_001164623, intron 1 of 17)	intron (NM_001164623, intron 1 of 17)	46276	NM_012154	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
0.34328-5	chr19	2598835	2599334	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-31629	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
6.88246-11	chr1	156040250	156040749	+	0	NA	TTS (NM_020387)	TTS (NM_020387)	9559	NR_133653	57111	Hs.632469	NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
4.36519-12	chr19	39108794	39109293	+	0	NA	promoter-TSS (NM_001308393)	promoter-TSS (NM_001308393)	-368	NM_007181	11184	Hs.95424	NM_007181	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
3.8934-8	chr13	53815950	53816449	+	0	NA	Intergenic	Intergenic	-90164	NR_125788	102723875	Hs.149083	NR_125788		LINC01065	-	long intergenic non-protein coding RNA 1065	ncRNA
10.8725-2	chr11	76155338	76155837	+	0	NA	promoter-TSS (NM_020193)	promoter-TSS (NM_020193)	-482	NM_001300944	56946	Hs.352588	NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY, BRCA2 interacting transcriptional repressor	protein-coding
2.32844-12	chr8	98477174	98477673	+	0	NA	Intergenic	Intergenic	-18698	NR_125390	101927066	Hs.732112	NR_125390		LOC101927066	-	uncharacterized LOC101927066	ncRNA
0.0130484-59	chr8	42067302	42067801	+	0	NA	Intergenic	Intergenic	-2309	NM_000930	5327	Hs.491582	NM_000930	ENSG00000104368	PLAT	T-PA|TPA	plasminogen activator, tissue type	protein-coding
9.66576-7	chr5	296295	296794	+	0	NA	intron (NM_001267557, intron 2 of 3)	L1ME3E|LINE|L1	-7747	NM_001242412	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
1.73277-8	chr5	1386286	1386785	+	0	NA	Intergenic	CpG	-6347	NR_125810	100506791	Hs.146092	NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
19.9568-9	chr2	50496080	50496579	+	0	NA	intron (NM_001135659, intron 18 of 23)	intron (NM_001135659, intron 18 of 23)	78563	NM_001330091	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
17.5945-4	chrX	20080176	20080675	+	0	NA	intron (NM_152780, intron 3 of 15)	MIRb|SINE|MIR	-45120	NR_037414	100500809		NR_037414	ENSG00000264566	MIR23C	hsa-mir-23c|mir-23c	microRNA 23c	ncRNA
0.259491-8	chr17	66287242	66287741	+	0	NA	promoter-TSS (NM_001174166)	promoter-TSS (NM_001174166)	-86	NM_001174166	9120	Hs.42645	NM_004694	ENSG00000108932	SLC16A6	MCT6|MCT7	solute carrier family 16 member 6	protein-coding
2.82329-12	chr21	15295510	15296009	+	0	NA	Intergenic	MER61C|LTR|ERV1	57006	NR_027270	391267	Hs.364456	NM_153750	ENSG00000215559	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
0.296531-65	chr2	5831567	5832066	+	0	NA	promoter-TSS (NR_110580)	promoter-TSS (NR_110580)	-566	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
4.21361-5	chr7	81965186	81965685	+	0	NA	intron (NM_000722, intron 2 of 38)	intron (NM_000722, intron 2 of 38)	107687	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
0.447935-3	chr16	57126614	57127113	+	0	NA	intron (NM_152727, intron 1 of 15)	CpG	408	NM_152727	221184	Hs.339809	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
5.22879-17	chr3	72532011	72532510	+	0	NA	Intergenic	L3b|LINE|CR1	-36486	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
0.589858-41	chr9_gl000199_random	40631	41130	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
0.609802-28	chr6	42515610	42516109	+	0	NA	Intergenic	Intergenic	-15901	NM_015255	23304	Hs.529925	NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
10.2826-4	chr3	134800752	134801251	+	0	NA	intron (NM_004441, intron 3 of 15)	intron (NM_004441, intron 3 of 15)	286902	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
0.777937-12	chr5	88025194	88025693	+	0	NA	intron (NM_001193347, intron 9 of 11)	intron (NM_001193347, intron 9 of 11)	-44823	NR_015436	645323	Hs.12827	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|VISC|Visc-1a|Visc-1b|Visc-2	long intergenic non-protein coding RNA 461	ncRNA
0.624821-27	chr9	138853072	138853571	+	0	NA	promoter-TSS (NM_016172)	promoter-TSS (NM_016172)	-95	NM_016172	10422	Hs.9194	NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
4.50997-8	chr16	4784580	4785079	+	0	NA	promoter-TSS (NM_001324130)	promoter-TSS (NM_001324130)	-451	NM_001308089	124401	Hs.654859	NM_133450	ENSG00000168096	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
0.181814-11	chr9	138271741	138272240	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	36895	NM_173520	157927	Hs.559511	NM_173520		C9orf62	-	chromosome 9 open reading frame 62	protein-coding
0.835461-5	chr5	1316937	1317436	+	0	NA	TTS (NM_030782)	TTS (NM_030782)	-7694	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
7.25842-10	chr12	2921730	2922229	+	0	NA	exon (NM_018463, exon 1 of 12)	exon (NM_018463, exon 1 of 12)	191	NR_130744	55846	Hs.446098	NM_018463	ENSG00000111203	ITFG2	MDS028	integrin alpha FG-GAP repeat containing 2	protein-coding
0.254883-49	chr13	70827950	70828449	+	0	NA	Intergenic	L1MB7|LINE|L1	-145574	NM_020866	57626	Hs.508201	NM_020866	ENSG00000150361	KLHL1	MRP2	kelch like family member 1	protein-coding
0.93665-12	chr2	113299436	113300229	+	0	NA	promoter-TSS (NR_136321)	promoter-TSS (NR_136321)	-43	NR_136321	105373562	Hs.599548	NR_136321		LOC105373562	-	uncharacterized LOC105373562	ncRNA
3.39135-3	chr2	153191422	153191921	+	0	NA	promoter-TSS (NM_052905)	promoter-TSS (NM_052905)	-80	NM_052905	114793	Hs.654630	NM_052905	ENSG00000157827	FMNL2	FHOD2	formin like 2	protein-coding
1.49967-16	chr1	153854207	153854706	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	40995	NM_020699	57459	Hs.4779	NM_020699	ENSG00000143614	GATAD2B	MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
2.58061-4	chr4	146630493	146630992	+	0	NA	intron (NM_001080531, intron 2 of 5)	MER50-int|LTR|ERV1	29386	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
0.141246-15	chr5	61519118	61519617	+	0	NA	Intergenic	Intergenic	-82622	NM_004520	3796	Hs.558351	NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
3.35358	chr2	97760820	97761319	+	0	NA	promoter-TSS (NM_199336)	promoter-TSS (NM_199336)	-450	NM_001320849	151313	Hs.567723	NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
0.899095-14	chr12	20833801	20834300	+	0	NA	3' UTR (NM_000921, exon 16 of 16)	3' UTR (NM_000921, exon 16 of 16)	-14239	NM_001145945	53919	Hs.47261	NM_017435	ENSG00000139155	SLCO1C1	OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14	solute carrier organic anion transporter family member 1C1	protein-coding
17.4473-2	chr6	153493903	153494402	+	0	NA	Intergenic	Intergenic	-41763	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
2.9073-4	chr17	70858688	70859187	+	0	NA	intron (NM_139177, intron 5 of 9)	intron (NM_139177, intron 5 of 9)	-222326	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
4.41291	chr2	47615276	47615775	+	0	NA	Intergenic	LTR41|LTR|ERVL	10711	NR_030286	693144		NR_030286	ENSG00000207923	MIR559	MIRN559|hsa-mir-559	microRNA 559	ncRNA
0.190881-41	chr7	115302124	115302623	+	0	NA	Intergenic	Intergenic	305994	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
0.428718-13	chr6	157129281	157129780	+	0	NA	intron (NM_020732, intron 1 of 19)	intron (NM_020732, intron 1 of 19)	-28665	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
1.15771-23	chr2	37383464	37383963	+	0	NA	intron (NM_002759, intron 1 of 16)	intron (NM_002759, intron 1 of 16)	477	NM_002759	5610	Hs.131431	NM_002759	ENSG00000055332	EIF2AK2	EIF2AK1|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
0.400052-33	chr16	66304287	66304786	+	0	NA	Intergenic	CpG	-95974	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
2.88193-5	chr9	84947550	84948049	+	0	NA	Intergenic	Intergenic	344112	NM_001001670	389763	Hs.209545	NM_001001670	ENSG00000214929	SPATA31D1	FAM75D1	SPATA31 subfamily D member 1	protein-coding
2.99296-20	chr4	83351316	83352057	+	0	NA	promoter-TSS (NR_003249)	promoter-TSS (NR_003249)	53	NR_120457	58478	Hs.18442	NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
1.37869-28	chr12	57472387	57472886	+	0	NA	promoter-TSS (NM_001130963)	promoter-TSS (NM_001130963)	-62	NM_001130963	23306	Hs.591040	NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
0.545314-4	chr7	97910549	97911048	+	0	NA	promoter-TSS (NM_015379)	promoter-TSS (NM_015379)	-181	NM_001159491	25798	Hs.567438	NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
4.19075-7	chr1	228318627	228319126	+	0	NA	Intergenic	PRIMAX-int|LTR|ERV1	-8909	NM_001242839	2987	Hs.376933	NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
0.0833099-24	chrX	100306810	100307309	+	0	NA	promoter-TSS (NM_001167970)	promoter-TSS (NM_001167970)	46	NM_001167971	79979	Hs.496501	NM_024917	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B	protein-coding
1.19186-38	chr9	38066237	38066736	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	2724	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
4.22508-2	chr9	17707729	17708228	+	0	NA	intron (NM_003026, intron 1 of 8)	intron (NM_003026, intron 1 of 8)	129026	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
0.32452-21	chr2	1711682	1712181	+	0	NA	intron (NM_012293, intron 1 of 22)	intron (NM_012293, intron 1 of 22)	36388	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
2.20404-4	chr19	16539917	16540416	+	0	NA	intron (NM_021235, intron 7 of 22)	intron (NM_021235, intron 7 of 22)	42657	NM_001258376	58513	Hs.654639	NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
0.366845-5	chr11	14402635	14403134	+	0	NA	Intergenic	CpG	-16832	NM_001177314	22800	Hs.502004	NM_012250	ENSG00000133818	RRAS2	TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
1.40862-10	chr6	2634611	2635110	+	0	NA	promoter-TSS (NR_131168)	promoter-TSS (NR_131168)	-23	NR_131168	154386	Hs.680574	NM_152554	ENSG00000164385	LINC01600	C6orf195|bA145H9.2	long intergenic non-protein coding RNA 1600	ncRNA
9.24453-22	chr1	203242211	203242710	+	0	NA	Intergenic	Intergenic	-13820	NR_117097	100506775	Hs.443859	NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
28.8273	chr5	43643776	43644275	+	0	NA	intron (NM_001331026, intron 6 of 20)	Tigger12A|DNA|TcMar-Tigger	-40693	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
35.1999-2	chr7	45091505	45092004	+	0	NA	intron (NM_001029835, intron 2 of 9)	ERV3-16A3_I-int|LTR|ERVL	24521	NM_001029835	83605	Hs.148272	NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffolding protein	protein-coding
4.59671-9	chr5	10565699	10566563	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	1696	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
1.81774-6	chr12	12876999	12877498	+	0	NA	Intergenic	CpG	-1603	NM_001130415	81575	Hs.23388	NM_030817	ENSG00000178878	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
0.772745-4	chr2	20668769	20669268	+	0	NA	Intergenic	Intergenic	22186	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
2.97569-4	chr19	52842497	52842996	+	0	NA	intron (NM_001161427, intron 1 of 4)	LTR5B|LTR|ERVK	3248	NM_001161426	162963	Hs.147025	NM_173530	ENSG00000167554	ZNF610	-	zinc finger protein 610	protein-coding
0.555173-12	chr7	84814317	84814816	+	0	NA	Intergenic	Intergenic	-63319	NM_152754	223117	Hs.201340	NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
0.25028-37	chr15	89905013	89905512	+	0	NA	promoter-TSS (NR_133002)	promoter-TSS (NR_133002)	452	NR_133001	254559	Hs.136313	NR_015411	ENSG00000255571	MIR9-3HG	LINC00925	MIR9-3 host gene	ncRNA
0.296531-27	chr11	34379376	34379875	+	0	NA	promoter-TSS (NM_145804)	promoter-TSS (NM_145804)	-70	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
6.92504-21	chr11	19745167	19745666	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	-9198	NR_015384	100126784	Hs.64341	NR_015384		LOC100126784	-	uncharacterized LOC100126784	ncRNA
0.245682-28	chr12	29300901	29301400	+	0	NA	promoter-TSS (NM_001271783)	promoter-TSS (NM_001271783)	-786	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
0.296531-77	chr10	29698239	29698738	+	0	NA	promoter-TSS (NR_110929)	promoter-TSS (NR_110929)	25	NR_110923	102724316	Hs.499209	NR_003930	ENSG00000224597	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
0.540393-40	chr2	7057248	7057747	+	0	NA	promoter-TSS (NM_014746)	promoter-TSS (NM_014746)	-26	NM_014746	9781	Hs.22146	NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4	ring finger protein 144A	protein-coding
0.48177-6	chr2	96728677	96729176	+	0	NA	Intergenic	Intergenic	-27204	NM_001321531	150763	Hs.348629	NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
4.7237-21	chr4	153289100	153289599	+	0	NA	intron (NM_033632, intron 2 of 11)	intron (NM_033632, intron 2 of 11)	14315	NM_001013415	55294	Hs.561245	NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
18.6967-4	chr1	11419000	11419499	+	0	NA	Intergenic	Intergenic	85994	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
8.06875-18	chr6	6724691	6725190	+	0	NA	Intergenic	Intergenic	-101881	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
5.17126-3	chr1	24262468	24262967	+	0	NA	Intergenic	SVA_D|Other|Other	7157	NR_039615	100616492		NR_039615	ENSG00000264926	MIR378F	mir-378f	microRNA 378f	ncRNA
1.79799-18	chr2	237076776	237077275	+	0	NA	promoter-TSS (NM_001301687)	promoter-TSS (NM_001301687)	-373	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
4.698-5	chr1	219347074	219347573	+	0	NA	promoter-TSS (NR_038845)	promoter-TSS (NR_038845)	150	NM_138794	127018	Hs.657617	NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
0.25028-9	chr3	141867666	141868165	+	0	NA	intron (NM_001178139, intron 1 of 12)	intron (NM_001178139, intron 1 of 12)	471	NM_001178139	7029	Hs.379018	NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
2.98432-6	chr4_gl000193_random	80375	80874	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	7751	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
6.38272-9	chr9	111033925	111034424	+	0	NA	Intergenic	Intergenic	584101	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
5.83359-15	chr1	234690507	234691006	+	0	NA	Intergenic	Intergenic	-23231	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
5.36107-7	chr1	249077453	249077952	+	0	NA	Intergenic	Intergenic	41863	NM_001322463	80851	Hs.298573	NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
5.12862-3	chr1	184724422	184724921	+	0	NA	promoter-TSS (NM_001319960)	promoter-TSS (NM_001319960)	-630	NR_135118	80267	Hs.523811	NM_025191	ENSG00000116406	EDEM3	C1orf22	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
14.4249	chr20	35874136	35874635	+	0	NA	Intergenic	Intergenic	10926	NM_021081	2691	Hs.37023	NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
4.78862-2	chr6	107193609	107194407	+	0	NA	intron (NR_033557, intron 1 of 6)	intron (NR_033557, intron 1 of 6)	-37992	NR_030314	693172		NR_030314	ENSG00000207577	MIR587	MIRN587|hsa-mir-587	microRNA 587	ncRNA
1.11821-8	chr16	23689867	23690366	+	0	NA	promoter-TSS (NM_005030)	promoter-TSS (NM_005030)	23	NM_005030	5347	Hs.592049	NM_005030	ENSG00000166851	PLK1	PLK|STPK13	polo like kinase 1	protein-coding
3.23306-5	chr13	92000494	92001781	+	0	NA	intron (NR_027350, intron 1 of 1)	CpG	1063	NR_027349	407975	Hs.24115	NR_027349	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
0.423927-3	chr22	47439585	47440084	+	0	NA	intron (NR_104292, intron 12 of 13)	intron (NR_104292, intron 12 of 13)	-127896	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
4.80172-13	chr12	75995842	75996341	+	0	NA	Intergenic	Intergenic	-90673	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
0.609802-16	chr14	96570921	96571420	+	0	NA	Intergenic	Intergenic	65509	NM_001252507	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
3.24222-6	chr11	14913002	14913501	+	0	NA	intron (NM_024514, intron 1 of 4)	CpG	500	NM_024514	120227	Hs.371427	NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
0.25028-2	chr9	97712573	97713403	+	0	NA	intron (NM_001193329, intron 6 of 15)	intron (NM_001193329, intron 6 of 15)	-114644	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
0.452752-11	chr12	110151235	110151734	+	0	NA	promoter-TSS (NM_032829)	promoter-TSS (NM_032829)	-703	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
1.94499-15	chr4	79533492	79533991	+	0	NA	Intergenic	Intergenic	-33407	NR_038305	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
15.9688-7	chr14	47287285	47287784	+	0	NA	Intergenic	Intergenic	-166506	NM_080746	140801	Hs.308332	NM_080746	ENSG00000165496	RPL10L	RPL10_5_1358	ribosomal protein L10 like	protein-coding
0.599818-36	chr16	73092733	73093232	+	0	NA	promoter-TSS (NM_001164766)	promoter-TSS (NM_001164766)	-448	NM_001164766	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
0.680339-28	chr2	96810989	96811488	+	0	NA	promoter-TSS (NM_004418)	promoter-TSS (NM_004418)	-59	NM_004418	1844	Hs.1183	NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
1.96543-8	chr14	21966635	21967134	+	0	NA	3' UTR (NM_001303523, exon 8 of 8)	3' UTR (NM_001303523, exon 8 of 8)	12633	NM_019852	56339	Hs.168799	NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase like 3	protein-coding
0.338583-18	chr2	56236177	56236676	+	0	NA	intron (NR_126406, intron 2 of 2)	intron (NR_126406, intron 2 of 2)	-8496	NR_030623	100126319		NR_030623	ENSG00000211520	MIR216B	MIRN216B|mir-216b	microRNA 216b	ncRNA
8.29738-3	chr7	78398993	78399492	+	0	NA	intron (NM_001301128, intron 2 of 20)	intron (NM_001301128, intron 2 of 20)	-239062	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
0.0217692-4	chr5	41843496	41843995	+	0	NA	intron (NM_000436, intron 5 of 16)	intron (NM_000436, intron 5 of 16)	-26387	NR_046635	100874002	Hs.375537	NR_046635	ENSG00000248668	OXCT1-AS1	-	OXCT1 antisense RNA 1	ncRNA
1.13509-8	chr16	89241607	89242106	+	0	NA	intron (NM_004933, intron 1 of 13)	MIRb|SINE|MIR	3693	NM_004933	1013	Hs.148090	NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
3.90406-3	chr12	42743119	42743618	+	0	NA	intron (NM_201438, intron 3 of 8)	SVA_B|Other|Other	23421	NM_201515	51535	Hs.444157	NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
4.31798-3	chr17	79885929	79886428	+	0	NA	promoter-TSS (NM_002359)	promoter-TSS (NM_002359)	473	NR_015454	92659	Hs.336958	NR_015454	ENSG00000265688	MAFG-AS1	-	MAFG antisense RNA 1 (head to head)	ncRNA
0.0744648-31	chr2	11886534	11887033	+	0	NA	promoter-TSS (NM_145693)	promoter-TSS (NM_145693)	61	NM_145693	23175	Hs.467740	NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
4.85452-8	chr5	43413003	43413502	+	0	NA	promoter-TSS (NM_148672)	promoter-TSS (NM_148672)	-759	NM_148672	56477	Hs.656904	NM_019846	ENSG00000151882	CCL28	CCK1|MEC|SCYA28	C-C motif chemokine ligand 28	protein-coding
0.47692-8	chr9	130547351	130547850	+	0	NA	promoter-TSS (NM_001261)	promoter-TSS (NM_001261)	-512	NR_039767	100616250		NR_039767	ENSG00000136807	MIR3960	-	microRNA 3960	ncRNA
6.00326-2	chr16	82673310	82673809	+	0	NA	intron (NM_001220488, intron 2 of 14)	L2a|LINE|L2	13160	NM_001220491	1012	Hs.654386	NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
1.40261-8	chr8	5798188	5798687	+	0	NA	Intergenic	Intergenic	465632	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
5.48214-2	chr18	68167301	68167800	+	0	NA	Intergenic	Intergenic	-115723	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
1.40261-5	chr14	78473220	78473719	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-163247	NM_001330195	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
9.24453-16	chr2	44125457	44125956	+	0	NA	intron (NM_133259, intron 34 of 37)	intron (NM_133259, intron 34 of 37)	59603	NM_022437	64241	Hs.413931	NM_022437	ENSG00000143921	ABCG8	GBD4|STSL	ATP binding cassette subfamily G member 8	protein-coding
28.0688	chr3	193664603	193665102	+	0	NA	Intergenic	Intergenic	47175	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
0.0436481-35	chr7	104652997	104653496	+	0	NA	non-coding (NR_024586, exon 1 of 1)	non-coding (NR_024586, exon 1 of 1)	1342	NR_024586	100216545	Hs.631150	NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1 (head to head)	ncRNA
16.038-6	chr16	12730705	12731204	+	0	NA	Intergenic	Intergenic	-83224	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
5.08638-8	chr9	117481527	117482026	+	0	NA	Intergenic	Intergenic	-37407	NR_133056	100505478	Hs.200101	NM_001199233	ENSG00000230601	LOC100505478	-	uncharacterized LOC100505478	protein-coding
0.51587-21	chr17	26732916	26733415	+	0	NA	promoter-TSS (NM_001242366)	promoter-TSS (NM_001242366)	65	NM_001242366	113235	Hs.446689	NM_080669	ENSG00000076351	SLC46A1	G21|HCP1|PCFT	solute carrier family 46 member 1	protein-coding
1.00727-14	chr2	76025825	76026324	+	0	NA	Intergenic	Intergenic	-87963	NM_003203	6936	Hs.303808	NM_003203	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
0.231917-30	chr1	60412950	60413449	+	0	NA	Intergenic	Intergenic	-20729	NR_134981	1573	Hs.152096	NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
0.00434512-37	chr5	82769588	82770087	+	0	NA	intron (NM_001164097, intron 1 of 13)	intron (NM_001164097, intron 1 of 13)	2344	NM_001164097	1462	Hs.643801	NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
2.09715-11	chr7	50873444	50873943	+	0	NA	Intergenic	L1M5|LINE|L1	-12534	NM_001001555	2887	Hs.164060	NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
0.0612309-28	chr1	11435761	11436260	+	0	NA	Intergenic	Intergenic	102755	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
23.9469	chr8	82644787	82645286	+	0	NA	exon (NM_152284, exon 1 of 5)	exon (NM_152284, exon 1 of 5)	348	NM_152284	92421	Hs.183861	NM_152284	ENSG00000164695	CHMP4C	SNF7-3|Shax3|VPS32C	charged multivesicular body protein 4C	protein-coding
0.34328-25	chr6	1679119	1679618	+	0	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	68687	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
0.909791-6	chr12	19245210	19245709	+	0	NA	Intergenic	SVA_B|Other|Other	-37167	NM_001256470	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
1.9044-13	chr21	38579892	38580391	+	0	NA	promoter-TSS (NR_026719)	promoter-TSS (NR_026719)	-663	NR_026719	257203	Hs.505159	NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9 (non-protein coding)	ncRNA
3.74688-3	chr6	133141914	133142413	+	0	NA	Intergenic	Intergenic	3805	NR_002436	594839	Hs.671378	NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
2.9243-10	chr8	41173079	41173578	+	0	NA	Intergenic	Intergenic	-6338	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled related protein 1	protein-coding
0.726296-13	chr5	32710768	32711267	+	0	NA	promoter-TSS (NM_001204375)	promoter-TSS (NM_001204375)	274	NM_001204376	4883	Hs.13528	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
32.4033	chr21	28308214	28308713	+	0	NA	intron (NM_007038, intron 3 of 7)	intron (NM_007038, intron 3 of 7)	-17817	NR_039916	100616243		NR_039916	ENSG00000266133	MIR4759	-	microRNA 4759	ncRNA
0.254883-13	chr7	146786053	146786552	+	0	NA	intron (NR_110829, intron 1 of 3)	intron (NR_110829, intron 1 of 3)	8399	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
9.17215-14	chr4	20701711	20702210	+	0	NA	promoter-TSS (NM_001317849)	promoter-TSS (NM_001317849)	-76	NM_001330748	133015	Hs.479298	NM_145048	ENSG00000163138	PACRGL	C4orf28	PARK2 coregulated like	protein-coding
0.0612309-26	chr20	18774467	18774966	+	0	NA	promoter-TSS (NR_026884)	promoter-TSS (NR_026884)	23	NR_026885	100270804	Hs.598768	NR_026885		LOC100270804	-	uncharacterized LOC100270804	ncRNA
6.65546-10	chr1	115907287	115907786	+	0	NA	Intergenic	Intergenic	-26679	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
5.68636-4	chr6	97284401	97284900	+	0	NA	intron (NM_001143957, intron 1 of 2)	intron (NM_001143957, intron 1 of 2)	703	NM_030784	81491	Hs.221364	NM_030784	ENSG00000112218	GPR63	PSP24(beta)|PSP24B	G protein-coupled receptor 63	protein-coding
1.76526-2	chr11	6711838	6712337	+	0	NA	Intergenic	SVA_D|Other|Other	-7455	NM_022061	63875	Hs.523456	NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26	mitochondrial ribosomal protein L17	protein-coding
1.45694-21	chr14	55807145	55807644	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	68522	NM_152231	55030	Hs.525348	NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
0.305841-8	chr16	1985280	1985779	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	7798	NM_016332	51734	Hs.655346	NM_016332	ENSG00000198736	MSRB1	HSPC270|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
1.14074-6	chr5	24445548	24446047	+	0	NA	Intergenic	AluSx|SINE|Alu	147811	NM_001317224	1008	Hs.92489	NM_006727	ENSG00000040731	CDH10	-	cadherin 10	protein-coding
5.80044-7	chr4	25378537	25379036	+	0	NA	promoter-TSS (NM_013367)	promoter-TSS (NM_013367)	-62	NM_013367	29945	Hs.152173	NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
1.22629-5	chr12	77214604	77215103	+	0	NA	intron (NM_015336, intron 7 of 16)	intron (NM_015336, intron 7 of 16)	56999	NM_015336	23390	Hs.4014	NM_015336	ENSG00000186908	ZDHHC17	HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type containing 17	protein-coding
0.400052-39	chr12	77525876	77526375	+	0	NA	Intergenic	Intergenic	-66765	NM_203394	144455	Hs.416375	NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
2.66001-22	chr7	107338023	107338522	+	0	NA	intron (NM_000441, intron 13 of 20)	intron (NM_000441, intron 13 of 20)	-36029	NR_028137	286002	Hs.512611	NR_028137		SLC26A4-AS1	-	SLC26A4 antisense RNA 1	ncRNA
0.979971-5	chr3	12525323	12526033	+	0	NA	promoter-TSS (NM_001145393)	promoter-TSS (NM_001145393)	-253	NR_135607	80746	Hs.335550	NM_025265	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease subunit 2	protein-coding
0.48177-25	chr8	144976640	144977139	+	0	NA	Intergenic	Intergenic	-24257	NM_031308	83481	Hs.200412	NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
0.0392635-14	chr1	59192978	59193477	+	0	NA	Intergenic	Intergenic	-27480	NM_001085487	114803	Hs.744921	NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB	Myb like, SWIRM and MPN domains 1	protein-coding
9.24453-2	chr1	38156015	38156514	+	0	NA	promoter-TSS (NM_001303030)	promoter-TSS (NM_001303030)	3	NM_001303030	54955	Hs.272673	NM_017850	ENSG00000116922	C1orf109	-	chromosome 1 open reading frame 109	protein-coding
2.77366-10	chr14	24610130	24611118	+	0	NA	5' UTR (NM_001346876, exon 1 of 5)	5' UTR (NM_001346876, exon 1 of 5)	173	NM_001346875	51016	Hs.271614	NM_016049	ENSG00000100908	EMC9	C14orf122|CGI-112|FAM158A	ER membrane protein complex subunit 9	protein-coding
17.2354-3	chr1	26215969	26216468	+	0	NA	intron (NM_001145454, intron 4 of 4)	L2a|LINE|L2	16426	NM_203401	3925	Hs.209983	NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
76.6959	chr8	128289067	128289566	+	0	NA	intron (NR_117099, intron 1 of 3)	intron (NR_117099, intron 1 of 3)	32434	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLo-2|LINC01244	cancer susceptibility candidate 21 (non-protein coding)	ncRNA
1.4691-9	chr3	86782244	86782743	+	0	NA	Intergenic	LTR12D|LTR|ERV1	251400	NR_135563	101927494	Hs.385622	NR_135563	ENSG00000241328	LINC02070	-	long intergenic non-protein coding RNA 2070	ncRNA
24.6344-2	chr7	7538345	7538844	+	0	NA	intron (NM_001037763, intron 11 of 34)	intron (NM_001037763, intron 11 of 34)	36866	NM_001037763	340267	Hs.491104	NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
1.73277-13	chr16	11891367	11891866	+	0	NA	promoter-TSS (NM_014153)	promoter-TSS (NM_014153)	-502	NM_014153	29066	Hs.371856	NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
3.05395-7	chr12	118569676	118570175	+	0	NA	Intergenic	Intergenic	-3764	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
3.99027-5	chr12	106682109	106682608	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-14211	NM_152772	255394	Hs.696047	NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
5.17126-6	chr8	109735039	109735538	+	0	NA	intron (NR_136411, intron 1 of 3)	intron (NR_136411, intron 1 of 3)	64556	NR_136411	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
1.64944-4	chr18	61911730	61912229	+	0	NA	intron (NR_033983, intron 2 of 2)	intron (NR_033983, intron 2 of 2)	15311	NR_033983	400654	Hs.434235	NR_033983	ENSG00000266952	LINC01538	-	long intergenic non-protein coding RNA 1538	ncRNA
15.2143	chr13	71362119	71362618	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-226905	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
3.5164-12	chr2	112641732	112642231	+	0	NA	promoter-TSS (NM_022662)	promoter-TSS (NM_022662)	-240	NM_022662	64682	Hs.436527	NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
4.46117-14	chr1	53943296	53943795	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	18473	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
43.3913	chr7	137630695	137631194	+	0	NA	intron (NM_194071, intron 1 of 11)	MLT1E1|LTR|ERVL-MaLR	-7150	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
1.42668-5	chr9	135897653	135898152	+	0	NA	Intergenic	Intergenic	2085	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
33.1515	chr6	159630826	159631325	+	0	NA	intron (NM_032532, intron 4 of 22)	intron (NM_032532, intron 4 of 22)	-40036	NR_121668	101929122	Hs.134215	NR_121668		LOC101929122	-	uncharacterized LOC101929122	ncRNA
0.254883-30	chr3	196715008	196715507	+	0	NA	Intergenic	Intergenic	-14520	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1	MELTF antisense RNA 1	ncRNA
4.16801-3	chr7	122526551	122527050	+	0	NA	promoter-TSS (NM_017954)	promoter-TSS (NM_017954)	13	NM_001167940	93664	Hs.649459	NM_017954	ENSG00000081803	CADPS2	CAPS2	calcium dependent secretion activator 2	protein-coding
0.385789-19	chr2	85501396	85501895	+	0	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	53774	NM_001206840	10618	Hs.593382	NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
0.726296-15	chr17	53341999	53342498	+	0	NA	promoter-TSS (NM_002126)	promoter-TSS (NM_002126)	-73	NM_002126	3131	Hs.196952	NM_002126	ENSG00000108924	HLF	-	HLF, PAR bZIP transcription factor	protein-coding
13.7059-3	chr10	121977212	121977711	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-239005	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PLPP4	DPPL2|PPAPDC1|PPAPDC1A	phospholipid phosphatase 4	protein-coding
19.2812-6	chr4	100279842	100280341	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-5889	NM_000669	126	Hs.654537	NM_000669	ENSG00000248144	ADH1C	ADH3	alcohol dehydrogenase 1C (class I), gamma polypeptide	protein-coding
2.68411-3	chr6	168436746	168437245	+	0	NA	intron (NM_030615, intron 4 of 8)	intron (NM_030615, intron 4 of 8)	18442	NM_005355	3834	Hs.150013	NM_005355	ENSG00000125337	KIF25	KNSL3	kinesin family member 25	protein-coding
12.7003-2	chr18	29778172	29778671	+	0	NA	intron (NM_001308171, intron 5 of 14)	intron (NM_001308171, intron 5 of 14)	8434	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
3.67543-4	chr1	85690374	85690873	+	0	NA	Intergenic	Intergenic	-23895	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
8.35647-7	chr1	201977196	201977695	+	0	NA	Intergenic	Intergenic	-2245	NM_004433	1999	Hs.603657	NM_004433	ENSG00000163435	ELF3	EPR-1|ERT|ESE-1|ESX	E74 like ETS transcription factor 3	protein-coding
0.685421-11	chr6	96464034	96464533	+	0	NA	intron (NM_006581, intron 1 of 2)	intron (NM_006581, intron 1 of 2)	438	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
2.5649	chr15	51455028	51455527	+	0	NA	Intergenic	Intergenic	-57804	NM_207381	388121	Hs.306343	NM_207381	ENSG00000183578	TNFAIP8L3	TIPE3	TNF alpha induced protein 8 like 3	protein-coding
2.96709-19	chr14	93195104	93195603	+	0	NA	intron (NM_001008530, intron 3 of 14)	intron (NM_001008530, intron 3 of 14)	19694	NM_001008530	5641	Hs.18069	NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
13.279-10	chr15	42259901	42260400	+	0	NA	intron (NM_139265, intron 1 of 5)	L3|LINE|CR1	4605	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
0.400052	chr9	82591851	82592350	+	0	NA	intron (NR_121212, intron 2 of 4)	intron (NR_121212, intron 2 of 4)	2162	NR_121212	101927477	Hs.571630	NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
3.30683-17	chr6	81075706	81076205	+	0	NA	Intergenic	MamSINE1|SINE|tRNA	259628	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
1.53663-20	chr2	27593060	27593559	+	0	NA	promoter-TSS (NM_001267060)	promoter-TSS (NM_001267060)	15	NM_001318967	8890	Hs.169474	NM_015636	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	eukaryotic translation initiation factor 2B subunit delta	protein-coding
0.560111-4	chr5	176981386	176981885	+	0	NA	promoter-TSS (NM_001190946)	promoter-TSS (NM_001190946)	-49	NR_024019	54540	Hs.484289	NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
1.82435-10	chr9	893775	894274	+	0	NA	exon (NM_021951, exon 3 of 5)	exon (NM_021951, exon 3 of 5)	52334	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
7.77284-6	chr22	45089620	45090119	+	0	NA	intron (NM_001198721, intron 2 of 9)	MLT1C|LTR|ERVL-MaLR	-8209	NM_181334	553158	Hs.102336	NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
4.68521-10	chr7	28369504	28370003	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	30813	NM_182899	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
0.644927-7	chr2	206546917	206547416	+	0	NA	promoter-TSS (NM_003872)	promoter-TSS (NM_003872)	-58	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
1.26098-28	chr5	176730474	176730973	+	0	NA	promoter-TSS (NM_001271828)	promoter-TSS (NM_001271828)	22	NM_001031677	53917	Hs.16258	NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
4.44906-12	chr4	12989378	12989877	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	496362	NM_004249	9364	Hs.656060	NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
4.9485-2	chr2	235471772	235472271	+	0	NA	Intergenic	SVA_E|Other|Other	-66324	NM_001282431	10123	Hs.111554	NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
15.784	chr13	52092946	52093445	+	0	NA	Intergenic	Intergenic	-33530	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
4.86782-5	chr3	5068312	5068811	+	0	NA	Intergenic	Intergenic	-46915	NR_125915	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
6.92504-3	chr4	62070044	62070543	+	0	NA	intron (NM_015236, intron 1 of 24)	intron (NM_015236, intron 1 of 24)	3319	NM_001322246	23284	Hs.28391	NM_015236	ENSG00000150471	ADGRL3	CIRL3|CL3|LEC3|LPHN3	adhesion G protein-coupled receptor L3	protein-coding
0.47692-18	chr5	176289626	176290125	+	0	NA	intron (NM_133369, intron 2 of 14)	intron (NM_133369, intron 2 of 14)	36458	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
0.163737-24	chr14	74828961	74829460	+	0	NA	Intergenic	Intergenic	14044	NM_018228	55237	Hs.578167	NM_018228	ENSG00000133980	VRTN	C14orf115|vertnin	vertebrae development associated	protein-coding
0.457575	chr19	3126002	3126501	+	0	NA	Intergenic	L2a|LINE|L2	-9779	NM_002068	2769	Hs.73797	NM_002068	ENSG00000060558	GNA15	GNA16	G protein subunit alpha 15	protein-coding
1.41463-8	chr5	81300224	81300723	+	0	NA	intron (NM_001131028, intron 3 of 8)	Charlie10|DNA|hAT-Charlie	32629	NM_031482	83734	Hs.713698	NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
14.828-2	chr13	52248340	52248839	+	0	NA	intron (NM_052950, intron 2 of 11)	intron (NM_052950, intron 2 of 11)	90105	NM_052950	115825	Hs.46506	NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
14.2597-4	chr8	144437063	144437562	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	4835	NM_001258447	116447	Hs.528574	NM_052963	ENSG00000184428	TOP1MT	-	topoisomerase (DNA) I, mitochondrial	protein-coding
4.37707	chr11	66104001	66104807	+	0	NA	promoter-TSS (NM_004292)	promoter-TSS (NM_004292)	-404	NM_004292	9610	Hs.1030	NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
0.190881-4	chr15	52029344	52029843	+	0	NA	exon (NM_153374, exon 1 of 3)	exon (NM_153374, exon 1 of 3)	727	NM_153374	256586	Hs.603629	NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
1.77832-7	chr20	47299123	47299622	+	0	NA	intron (NM_020820, intron 10 of 39)	intron (NM_020820, intron 10 of 39)	145048	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
0.486625-3	chr17	76079175	76079674	+	0	NA	intron (NM_018996, intron 12 of 20)	intron (NM_018996, intron 12 of 20)	28456	NR_040071	100131096	Hs.635442	NR_040071	ENSG00000204282	TNRC6C-AS1	-	TNRC6C antisense RNA 1	ncRNA
10.2411-2	chr9	10346483	10346982	+	0	NA	intron (NM_002839, intron 2 of 45)	intron (NM_002839, intron 2 of 45)	265991	NM_002839	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
7.03335-4	chr1	233463909	233464408	+	0	NA	exon (NM_032435, exon 1 of 10)	exon (NM_032435, exon 1 of 10)	644	NM_032435	84451	Hs.547779	NM_032435	ENSG00000143674	MAP3K21	KIAA1804|MLK4|dJ862P8.3	mitogen-activated protein kinase kinase kinase 21	protein-coding
10.2228-7	chr7	9506858	9507357	+	0	NA	Intergenic	LTR9|LTR|ERV1	-166793	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
0.231917-41	chr17	71188472	71188971	+	0	NA	promoter-TSS (NM_018714)	promoter-TSS (NM_018714)	-452	NM_018714	9382	Hs.103555	NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
0.675262-33	chr17	76879520	76880019	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	19530	NM_001243541	100653515	Hs.734636	NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
5.00313-2	chr1	211877078	211877577	+	0	NA	Intergenic	Intergenic	-28355	NM_001204183	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding
0.254883-52	chr3	115417979	115418478	+	0	NA	intron (NM_001130064, intron 3 of 3)	intron (NM_001130064, intron 3 of 3)	76077	NM_001130064	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
4.20216-4	chr14	91838918	91839417	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	45021	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
0.287242-2	chr13	78390623	78391122	+	0	NA	Intergenic	L1PB4|LINE|L1	-2200	NR_103853	100505518	Hs.742215	NR_103853		EDNRB-AS1	-	EDNRB antisense RNA 1	ncRNA
2.89883-8	chr7	115593495	115593994	+	0	NA	intron (NM_012252, intron 5 of 7)	intron (NM_012252, intron 5 of 7)	14623	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
8.47712-14	chr21	46975434	46976061	+	0	NA	Intergenic	CpG	-13362	NM_001205206	6573	Hs.84190	NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	solute carrier family 19 member 1	protein-coding
0.5061-2	chr1	111991749	111992248	+	0	NA	promoter-TSS (NM_001317062)	promoter-TSS (NM_001317062)	-68	NM_001317063	79084	Hs.204773	NM_024102	ENSG00000116455	WDR77	HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50	WD repeat domain 77	protein-coding
2.96709-23	chr17	43360286	43360785	+	0	NA	intron (NM_003954, intron 6 of 15)	intron (NM_003954, intron 6 of 15)	-21056	NM_152343	124783	Hs.412719	NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
5.36107-4	chr9	100684272	100684771	+	0	NA	intron (NM_001330725, intron 1 of 5)	CpG	331	NM_001330725	51531	Hs.9196	NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
8.041-6	chr13	99705790	99706289	+	0	NA	intron (NM_001130049, intron 1 of 32)	intron (NM_001130049, intron 1 of 32)	32621	NM_015296	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
4.68521-7	chr1	87219358	87219857	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	49354	NM_001206652	51100	Hs.136309	NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like endophilin B1	protein-coding
16.1798-11	chr2	7098934	7099433	+	0	NA	intron (NM_014746, intron 2 of 8)	intron (NM_014746, intron 2 of 8)	-40370	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	ncRNA
0.51587-12	chr9	15403052	15403551	+	0	NA	Intergenic	Intergenic	-19481	NM_001039697	6619	Hs.546299	NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
25.1856	chr5	30606980	30607479	+	0	NA	Intergenic	MER4A|LTR|ERV1	-586533	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
1.19758	chr9	103189021	103189520	+	0	NA	promoter-TSS (NM_001198807)	promoter-TSS (NM_001198807)	-225	NM_080655	91283	Hs.530272	NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding