PeakID (cmd=annotatePeaks.pl DBA_MYC2DB_diffbind_reportLvC2_contrast.cMycUP.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
41.4206	chr5	43580543	43581042	+	0	NA	intron (NR_073113, intron 2 of 2)	LTR5_Hs|LTR|ERVK	-21999	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
16.8613-3	chr13	46945531	46946030	+	0	NA	intron (NM_001286766, intron 1 of 12)	intron (NM_001286766, intron 1 of 12)	15855	NM_001286763	80183	Hs.98117	NM_025113	ENSG00000102445	RUBCNL	C13orf18|KIAA0226L	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding
10.9963-2	chr1	18438967	18439466	+	0	NA	intron (NM_032880, intron 1 of 9)	intron (NM_032880, intron 1 of 9)	4976	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding
25.544	chr8	41463239	41463738	+	0	NA	intron (NM_178819, intron 2 of 12)	intron (NM_178819, intron 2 of 12)	-27601	NR_125824	102723729	Hs.586384	NR_125824		LOC102723729	-	uncharacterized LOC102723729	ncRNA
12.233	chr14	59758886	59759385	+	0	NA	intron (NM_014992, intron 2 of 24)	intron (NM_014992, intron 2 of 24)	28976	NM_014992	23002	Hs.19156	NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
10.575-2	chr7	141931487	141931986	+	0	NA	Intergenic	LTR1B|LTR|ERV1	15150	NR_024346	100289017	Hs.641504	NR_024346	ENSG00000240268	MOXD2P	MOXD2	monooxygenase, DBH-like 2, pseudogene	pseudo
10.1278-2	chr3	39697635	39698134	+	0	NA	Intergenic	SVA_B|Other|Other	-152521	NM_001284423	25924	Hs.594535	NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
20.2457-2	chr7	70600762	70601261	+	0	NA	intron (NM_022479, intron 1 of 10)	intron (NM_022479, intron 1 of 10)	3488	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
11.6368	chr5	38316846	38317345	+	0	NA	intron (NM_152403, intron 1 of 21)	intron (NM_152403, intron 1 of 21)	-26007	NR_046219	100852408	Hs.570954	NR_046219	ENSG00000248730	EGFLAM-AS4	-	EGFLAM antisense RNA 4	ncRNA
15.986-3	chr14	20904021	20904520	+	0	NA	promoter-TSS (NM_001109997)	promoter-TSS (NM_001109997)	-469	NM_001109997	123103	Hs.556014	NM_001109997	ENSG00000185271	KLHL33	-	kelch like family member 33	protein-coding
18.3268-2	chr7	116654641	116655140	+	0	NA	intron (NM_018412, intron 1 of 14)	intron (NM_018412, intron 1 of 14)	-5375	NR_106748	102466616		NR_106748	ENSG00000004866	MIR6132	hsa-mir-6132	microRNA 6132	ncRNA
16.7778	chr7	37188574	37189073	+	0	NA	intron (NM_001206482, intron 13 of 21)	intron (NM_001206482, intron 13 of 21)	151422	NR_104120	100861514	Hs.627775	NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
13.019-3	chr3	116559731	116560230	+	0	NA	Intergenic	Intergenic	9234	NR_039649	100616485		NR_039649	ENSG00000265433	MIR4447	-	microRNA 4447	ncRNA
15.2433	chr4	44188313	44188812	+	0	NA	intron (NM_198353, intron 1 of 1)	LTR1|LTR|ERV1	169483	NR_131958	100506827	Hs.156197	NR_131958	ENSG00000251350	LVCAT1	-	liver cancer-associated transcript 1	ncRNA
60.4624-2	chr6	122966445	122966944	+	0	NA	intron (NM_032471, intron 2 of 3)	intron (NM_032471, intron 2 of 3)	-7180	NM_001270395	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
18.2974-2	chr1	4455653	4456152	+	0	NA	Intergenic	Intergenic	-16209	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
21.8376	chrX	68627552	68628051	+	0	NA	Intergenic	Intergenic	-97277	NM_015686	27112	Hs.87619	NM_015686	ENSG00000130054	FAM155B	CXorf63|TED|TMEM28|bB57D9.1	family with sequence similarity 155 member B	protein-coding
15.4061-2	chr2	211022734	211023233	+	0	NA	intron (NM_152519, intron 1 of 14)	MLT1F2|LTR|ERVL-MaLR	13111	NM_001307976	151050	Hs.282260	NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
12.4718	chr14	66186579	66187078	+	0	NA	intron (NR_038167, intron 7 of 8)	L1M1|LINE|L1	249008	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
14.3415-2	chr14	71649782	71650281	+	0	NA	Intergenic	Intergenic	-215023	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
22.4642	chr7	133260372	133260871	+	0	NA	intron (NM_021807, intron 9 of 17)	intron (NM_021807, intron 9 of 17)	249020	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
17.2816-3	chr1	211870522	211871021	+	0	NA	Intergenic	Intergenic	-21799	NM_002497	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding
19.5861-2	chr3	12801794	12802293	+	0	NA	intron (NM_001284406, intron 1 of 11)	L2a|LINE|L2	-1235	NM_001284408	55287	Hs.475502	NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
52.6761	chr1	194724718	194725217	+	0	NA	Intergenic	Intergenic	1451092	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
16.0555-3	chr12	32417861	32418360	+	0	NA	intron (NM_001003398, intron 2 of 8)	L1MEc|LINE|L1	157925	NM_001714	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
22.2988	chr12	74628551	74629050	+	0	NA	intron (NR_038300, intron 3 of 6)	ERVL-B4-int|LTR|ERVL	57611	NR_038300	100507377	Hs.455715	NR_038300	ENSG00000251138	LOC100507377	-	uncharacterized LOC100507377	ncRNA
16.4975	chr2	235926022	235926521	+	0	NA	intron (NM_014521, intron 2 of 5)	intron (NM_014521, intron 2 of 5)	65643	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
16.7366	chr7	17762192	17762691	+	0	NA	Intergenic	Intergenic	-163908	NR_110013	101927630	Hs.583400	NR_110013	ENSG00000236039	LOC101927630	-	uncharacterized LOC101927630	ncRNA
10.5012-3	chr2	174529664	174530163	+	0	NA	Intergenic	Intergenic	299034	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
33.439	chr3	145079479	145079978	+	0	NA	Intergenic	Intergenic	799554	NM_000935	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
13.0803	chr12	53189387	53189886	+	0	NA	exon (NM_057088, exon 1 of 9)	exon (NM_057088, exon 1 of 9)	256	NM_057088	3850	Hs.680652	NM_057088	ENSG00000186442	KRT3	CK3|K3	keratin 3	protein-coding
20.4964-4	chr16	10716208	10716707	+	0	NA	Intergenic	Intergenic	-41884	NM_001424	2013	Hs.531561	NM_001424	ENSG00000213853	EMP2	XMP	epithelial membrane protein 2	protein-coding
18.2102	chr12	3223257	3223756	+	0	NA	intron (NM_006675, intron 2 of 8)	MER58B|DNA|hAT-Charlie	36985	NM_001168320	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
24.9757	chr2	173707205	173707704	+	0	NA	intron (NM_001100397, intron 1 of 27)	MLT1G1|LTR|ERVL-MaLR	-17312	NM_001282900	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
16.8613-5	chr7	74031420	74031919	+	0	NA	Intergenic	Intergenic	-40322	NM_032999	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
24.3063	chr5	123624759	123625258	+	0	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	149205	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
12.0343-3	chr3	164688227	164688726	+	0	NA	Intergenic	L1PA7|LINE|L1	107807	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase	protein-coding
14.828	chr12	107637075	107637574	+	0	NA	Intergenic	Intergenic	-74873	NM_001018072	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding
24.034-3	chr11	126926168	126926667	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-10480	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
23.1336-2	chr8	59697064	59697563	+	0	NA	Intergenic	Intergenic	-124909	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
23.1336-3	chr11	123667494	123667993	+	0	NA	Intergenic	LTR76|LTR|ERV1	9314	NM_001005325	390261	Hs.557924	NM_001005325	ENSG00000196099	OR6M1	OR11-271	olfactory receptor family 6 subfamily M member 1	protein-coding
31.2436	chr4	147399121	147399620	+	0	NA	intron (NM_001029998, intron 4 of 11)	intron (NM_001029998, intron 4 of 11)	43753	NM_001317816	84068	Hs.659209	NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7	solute carrier family 10 member 7	protein-coding
22.1183-2	chr11	88209227	88209726	+	0	NA	Intergenic	Intergenic	-28268	NR_049724	100873989	Hs.616625	NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
16.3639-4	chr3	37756714	37757213	+	0	NA	intron (NM_002207, intron 18 of 27)	intron (NM_002207, intron 18 of 27)	146308	NR_110531	101928153	Hs.657314	NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
32.5885-2	chr2	140562931	140563430	+	0	NA	Intergenic	Intergenic	781074	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA
16.1979	chr10	15429398	15429897	+	0	NA	Intergenic	FRAM|SINE|Alu	-16589	NM_001010924	221061	Hs.66762	NM_001010924	ENSG00000148468	FAM171A1	C10orf38	family with sequence similarity 171 member A1	protein-coding
19.3554	chr22	19839577	19840076	+	0	NA	5' UTR (NM_024627, exon 3 of 3)	5' UTR (NM_024627, exon 3 of 3)	2545	NM_024627	79680	Hs.105642	NM_024627	ENSG00000215012	C22orf29	BOP	chromosome 22 open reading frame 29	protein-coding
14.3533	chr18	45977545	45978044	+	0	NA	Intergenic	LTR1|LTR|ERV1	-42001	NM_001318841	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
10.8725-2	chr1	111007770	111008269	+	0	NA	Intergenic	Intergenic	14231	NM_032414	84432	Hs.514793	NM_032414	ENSG00000143125	PROK1	EGVEGF|PK1|PRK1	prokineticin 1	protein-coding
10.9098-3	chr14	19641921	19642420	+	0	NA	Intergenic	Intergenic	-7862	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
15.9688	chr3	177129909	177130408	+	0	NA	Intergenic	SVA_C|Other|Other	-29551	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
18.4771-2	chr15	78351787	78352286	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	17958	NM_144572	23102	Hs.567426	NM_015079	ENSG00000167202	TBC1D2B	-	TBC1 domain family member 2B	protein-coding
14.2481-2	chr16	52337939	52338438	+	0	NA	Intergenic	Intergenic	45712	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA
13.1876-2	chr9	129774544	129775043	+	0	NA	intron (NM_001190728, intron 3 of 16)	intron (NM_001190728, intron 3 of 16)	50289	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
27.0997	chr14	89852390	89852889	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	30815	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
25.2724	chr2	174888155	174888654	+	0	NA	Intergenic	Intergenic	-1604	NR_136175	100128905	Hs.456944	NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
42.2113	chr2	231544071	231544570	+	0	NA	Intergenic	Intergenic	20924	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
24.6344-2	chr5	7521820	7522319	+	0	NA	intron (NM_020546, intron 3 of 24)	intron (NM_020546, intron 3 of 24)	125726	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
12.426	chr1	3609037	3609536	+	0	NA	intron (NM_001126242, intron 1 of 10)	intron (NM_001126242, intron 1 of 10)	2050	NM_001204191	7161	Hs.192132	NM_005427	ENSG00000078900	TP73	P73	tumor protein p73	protein-coding
11.7718-2	chr22	27897056	27897555	+	0	NA	Intergenic	Intergenic	190693	NR_134581	100507657	Hs.537371	NR_134581	ENSG00000226741	LOC100507657	-	uncharacterized LOC100507657	ncRNA
19.9568-5	chr5	136934100	136934599	+	0	NA	Intergenic	Intergenic	48989	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
11.9044-3	chr2	171702812	171703311	+	0	NA	intron (NM_000817, intron 10 of 16)	intron (NM_000817, intron 10 of 16)	29861	NM_013445	2571	Hs.420036	NM_000817	ENSG00000128683	GAD1	CPSQ1|GAD|SCP	glutamate decarboxylase 1	protein-coding
15.5909-2	chr16	10821904	10822403	+	0	NA	Intergenic	Intergenic	-15490	NM_001278506	4682	Hs.81469	NM_002484	ENSG00000103274	NUBP1	NBP|NBP1|NBP35	nucleotide binding protein 1	protein-coding
27.0115	chr13	74926365	74926864	+	0	NA	Intergenic	L1PA8|LINE|L1	66638	NR_144452	100288208	Hs.532467	NM_001013669		LOC100288208	-	uncharacterized LOC100288208	ncRNA
21.4813	chr3	193741677	193742176	+	0	NA	intron (NR_136179, intron 1 of 2)	intron (NR_136179, intron 1 of 2)	-20478	NR_033944	647323	Hs.652830	NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
23.9147	chr17	60721869	60722368	+	0	NA	intron (NM_006039, intron 1 of 29)	intron (NM_006039, intron 1 of 29)	17356	NM_006039	9902	Hs.7835	NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C type 2	protein-coding
46.3827-2	chr3	159689088	159689587	+	0	NA	intron (NR_108088, intron 9 of 9)	intron (NR_108088, intron 9 of 9)	-17286	NM_000882	3592	Hs.673	NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
30.0349-4	chr8	93765401	93765900	+	0	NA	intron (NR_046114, intron 1 of 2)	intron (NR_046114, intron 1 of 2)	32638	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
10.6098	chr22	18799769	18800268	+	0	NA	Intergenic	Intergenic	-20544	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
19.8297	chr3	128109615	128110114	+	0	NA	intron (NM_021937, intron 6 of 6)	L2a|LINE|L2	-72573	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
14.0012-3	chr10	45952162	45952661	+	0	NA	3' UTR (NM_001282866, exon 8 of 8)	3' UTR (NM_001282866, exon 8 of 8)	-3842	NR_120674	102724323	Hs.559151	NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
18.4466	chr3	65520414	65520913	+	0	NA	intron (NM_015520, intron 2 of 24)	intron (NM_015520, intron 2 of 24)	-358828	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
38.1248	chr17	53253109	53253608	+	0	NA	Intergenic	Intergenic	-88963	NM_002126	3131	Hs.196952	NM_002126	ENSG00000108924	HLF	-	HLF, PAR bZIP transcription factor	protein-coding
12.6841	chr3	122692633	122693132	+	0	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	2099	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
10.8145	chr5	55670774	55671273	+	0	NA	Intergenic	Intergenic	106573	NR_104664	102467147	Hs.650177	NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
11.1351	chr21	44181370	44181869	+	0	NA	intron (NM_002606, intron 13 of 19)	intron (NM_002606, intron 13 of 19)	18485	NR_135517	101928311	Hs.570404	NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
18.962	chr22	37442966	37443465	+	0	NA	Intergenic	MIRb|SINE|MIR	-4561	NM_024681	79734	Hs.517597	NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
27.3755	chr5	21685907	21686406	+	0	NA	Intergenic	MER21B|LTR|ERVL	-198407	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
14.0012	chr5	22985682	22986181	+	0	NA	Intergenic	Intergenic	-132200	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
25.1856-3	chr9	31588055	31588554	+	0	NA	Intergenic	Intergenic	-206816	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
16.8403	chr15	78973874	78974373	+	0	NA	Intergenic	Intergenic	-40536	NM_000750	1143	Hs.624178	NM_000750	ENSG00000117971	CHRNB4	-	cholinergic receptor nicotinic beta 4 subunit	protein-coding
26.9897	chr15	68132333	68132832	+	0	NA	promoter-TSS (NR_125730).5	promoter-TSS (NR_125730).5	-199	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
12.2915-3	chr9	23551365	23551864	+	0	NA	intron (NR_121602, intron 13 of 27)	intron (NR_121602, intron 13 of 27)	120783	NR_121602	101929563	Hs.533220	NR_121602		LOC101929563	-	uncharacterized LOC101929563	ncRNA
21.0403-2	chr22	24824940	24825439	+	0	NA	TTS (NR_028484)	TTS (NR_028484)	1659	NR_103544	135	Hs.197029	NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
13.1336-2	chr1	179064489	179064988	+	0	NA	3' UTR (NM_022371, exon 6 of 6)	3' UTR (NM_022371, exon 6 of 6)	13626	NM_022371	64222	Hs.584957	NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
19.6257	chr1	184265504	184266003	+	0	NA	Intergenic	Intergenic	-90397	NM_030806	81563	Hs.497159	NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
28.3863	chrX	37526936	37527435	+	0	NA	intron (NM_001170331, intron 4 of 4)	MSTB1|LTR|ERVL-MaLR	-17824	NM_021083	7504	Hs.78919	NM_021083	ENSG00000047597	XK	KX|NA|NAC|X1k|XKR1	X-linked Kx blood group	protein-coding
13.1426	chr1	235022731	235023230	+	0	NA	Intergenic	Intergenic	76766	NR_125945	101927851	Hs.520684	NR_125945	ENSG00000238005	LOC101927851	-	uncharacterized LOC101927851	ncRNA
20.2457	chr3	189712840	189713339	+	0	NA	exon (NM_018192, exon 2 of 15)	exon (NM_018192, exon 2 of 15)	-125664	NR_126419	101929152		NR_126419	ENSG00000225764	P3H2-AS1	LEPREL1-AS1	P3H2 antisense RNA 1	ncRNA
11.4448	chr16	70517291	70517790	+	0	NA	intron (NM_015386, intron 14 of 18)	intron (NM_015386, intron 14 of 18)	29042	NM_145059	197258	Hs.7907	NM_145059	ENSG00000157353	FUK	1110046B12Rik	fucokinase	protein-coding
13.5164	chr3	13136849	13137348	+	0	NA	Intergenic	Intergenic	-22481	NM_001134382	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
22.8567-3	chr5	14238353	14238852	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	94791	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
12.2403	chr4	18108169	18108668	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-84920	NR_136669	254251	Hs.446201	NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
14.023-2	chr2	68019768	68020267	+	0	NA	Intergenic	Intergenic	32677	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
17.6195-6	chr13	40764844	40765343	+	0	NA	Intergenic	Intergenic	9147	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
10.1909-3	chr9	45872666	45873165	+	0	NA	Intergenic	L1PA13|LINE|L1	-244028	NR_103714	100289124	Hs.567050	NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
13.0364	chr12	26676602	26677101	+	0	NA	intron (NM_002223, intron 37 of 56)	intron (NM_002223, intron 37 of 56)	309280	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
18.2681	chr9	129820660	129821159	+	0	NA	intron (NM_001190728, intron 6 of 16)	intron (NM_001190728, intron 6 of 16)	64135	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
15.7675-7	chr9	107644491	107644990	+	0	NA	intron (NM_005502, intron 5 of 49)	intron (NM_005502, intron 5 of 49)	45787	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
22.1753-4	chr2	80679307	80679806	+	0	NA	intron (NM_001282597, intron 9 of 18)	intron (NM_001282597, intron 9 of 18)	139052	NM_001282599	1496	Hs.167368	NM_004389	ENSG00000066032	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin alpha 2	protein-coding
13.7986-2	chr16	70514175	70514674	+	0	NA	TTS (NM_145059)	TTS (NM_145059)	25926	NM_145059	197258	Hs.7907	NM_145059	ENSG00000157353	FUK	1110046B12Rik	fucokinase	protein-coding
12.2841-2	chr20	46478848	46479347	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-63737	NM_001161841	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
13.279-2	chr11	69264103	69264602	+	0	NA	Intergenic	Intergenic	23913	NM_001319657	102724265	Hs.448669	NM_001319657	ENSG00000255980	LOC102724265	-	uncharacterized LOC102724265	protein-coding
10.2228-2	chr16	84122175	84122674	+	0	NA	intron (NM_003791, intron 8 of 22)	intron (NM_003791, intron 8 of 22)	28124	NM_003791	8720	Hs.75890	NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
25.6067-2	chr2	102232719	102233218	+	0	NA	Intergenic	Intergenic	-81197	NM_004834	9448	Hs.701013	NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
12.0066	chr10	92034727	92035226	+	0	NA	Intergenic	Intergenic	265586	NR_110657	101926942	Hs.382666	NR_110657	ENSG00000236373	LOC101926942	-	uncharacterized LOC101926942	ncRNA
10.1502	chr5	642802	643301	+	0	NA	intron (NM_018140, intron 9 of 11)	intron (NM_018140, intron 9 of 11)	30646	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
21.8376-2	chr9	31730338	31730837	+	0	NA	Intergenic	Intergenic	-349099	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
23.0892-4	chr2	16133297	16133796	+	0	NA	Intergenic	Intergenic	-51175	NM_001329968	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	protein-coding
10.9205-3	chr20	17616294	17616793	+	0	NA	intron (NM_004587, intron 6 of 24)	intron (NM_004587, intron 6 of 24)	46385	NM_001042576	6238	Hs.472213	NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding
24.4733-2	chr2	5499437	5499936	+	0	NA	Intergenic	Intergenic	331564	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
11.0018-3	chr5	31762566	31763065	+	0	NA	intron (NM_178140, intron 1 of 24)	intron (NM_178140, intron 1 of 24)	123298	NM_178140	23037	Hs.481819	NM_015022	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
17.7989-2	chr5	79394747	79395246	+	0	NA	Intergenic	Intergenic	-15508	NR_109930	101929215		NR_109930	ENSG00000249825	CTD-2201I18.1	-	uncharacterized LOC101929215	ncRNA
16.7162	chr1	111299038	111299537	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-81632	NM_002232	3738	Hs.169948	NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
10.2919	chr7	131933961	131934460	+	0	NA	intron (NM_020911, intron 4 of 31)	intron (NM_020911, intron 4 of 31)	-11410	NR_134565	101928807	Hs.552131	NR_134565		LOC101928807	-	uncharacterized LOC101928807	ncRNA
13.7986	chr11	69009914	69010413	+	0	NA	Intergenic	Intergenic	-51442	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
17.2816-4	chr5	141700324	141700823	+	0	NA	intron (NM_030964, intron 1 of 2)	intron (NM_030964, intron 1 of 2)	-2686	NR_131221	100642175	Hs.684549	NR_131221	ENSG00000281881	SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
11.2668-2	chr13	52531553	52532052	+	0	NA	intron (NM_001005918, intron 5 of 16)	intron (NM_001005918, intron 5 of 16)	53828	NM_001243182	540	Hs.492280	NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
22.233	chr2	22158316	22158815	+	0	NA	Intergenic	MIRc|SINE|MIR	-225041	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
12.993	chr2	193843060	193843559	+	0	NA	Intergenic	Intergenic	228738	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
19.8297-3	chr17	79049981	79050480	+	0	NA	intron (NM_017451, intron 3 of 14)	intron (NM_017451, intron 3 of 14)	41283	NM_017450	10458	Hs.128316	NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1 associated protein 2	protein-coding
22.5104	chr9	122748576	122749075	+	0	NA	Intergenic	Intergenic	51487	NR_132393	106146149	Hs.638938	NR_132393	ENSG00000261432	LINC01613	n341773	long intergenic non-protein coding RNA 1613	ncRNA
11.1919-2	chr5	123621055	123621554	+	0	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	152909	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
17.122-2	chr6	97065899	97066398	+	0	NA	3' UTR (NM_020482, exon 7 of 7)	3' UTR (NM_020482, exon 7 of 7)	55147	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
17.3283-2	chr8	134758683	134759182	+	0	NA	Intergenic	Intergenic	30663	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
23.7779	chr17	44019517	44020016	+	0	NA	intron (NM_001123066, intron 1 of 14)	intron (NM_001123066, intron 1 of 14)	46617	NR_024560	100130148	Hs.669307	NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA
39.2082	chr9	114200707	114201206	+	0	NA	intron (NM_001080398, intron 7 of 50)	intron (NM_001080398, intron 7 of 50)	46069	NM_001080398	23392	Hs.368255	NM_001080398	ENSG00000136813	KIAA0368	ECM29	KIAA0368	protein-coding
22.2841-2	chr7	98865816	98866315	+	0	NA	Intergenic	Intergenic	-4859	NR_002147	84176	Hs.621401	NR_002147		MYH16	MHC20|MYH16P|MYH5	myosin heavy chain 16 pseudogene	pseudo
19.4692-7	chr17	73913163	73913662	+	0	NA	intron (NM_001319193, intron 22 of 28)	intron (NM_001319193, intron 22 of 28)	-12231	NM_032478	64978	Hs.442609	NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding
17.2584	chr8	133192580	133193079	+	0	NA	intron (NM_001204824, intron 3 of 14)	intron (NM_001204824, intron 3 of 14)	-75317	NM_001145095	10086	Hs.285026	NM_005712	ENSG00000132297	HHLA1	PLA2L	HERV-H LTR-associating 1	protein-coding
20.57	chr17	55538447	55538946	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	62262	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
30.7263-2	chr7	131529060	131529559	+	0	NA	Intergenic	Intergenic	-65670	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
16.2709	chr3	176505273	176505772	+	0	NA	Intergenic	MER61D|LTR|ERV1	29267	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
16.6354	chr5	112531329	112531828	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	99034	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
34.51	chr12	105218095	105218594	+	0	NA	intron (NM_032148, intron 9 of 9)	LTR1|LTR|ERV1	104128	NM_032148	84102	Hs.577463	NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
22.8567-2	chr8	106613223	106613722	+	0	NA	intron (NM_012082, intron 4 of 7)	intron (NM_012082, intron 4 of 7)	282325	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
10.013-3	chr13	76267533	76268032	+	0	NA	intron (NM_001306080, intron 1 of 30)	intron (NM_001306080, intron 1 of 30)	57358	NM_001306080	4008	Hs.207631	NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LOMP	LIM domain 7	protein-coding
16.5561	chr9	33800317	33800816	+	0	NA	Intergenic	Intergenic	5007	NM_002771	5646	Hs.654513	NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	protease, serine 3	protein-coding
17.8781	chr8	21593410	21593909	+	0	NA	intron (NM_001495, intron 4 of 8)	intron (NM_001495, intron 4 of 8)	52687	NM_001165039	2675	Hs.441202	NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
18.1531-2	chr6	169004010	169004509	+	0	NA	intron (NM_001166412, intron 8 of 12)	L2a|LINE|L2	162428	NM_001166412	64094	Hs.487200	NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
17.9048-2	chr17	27439818	27440317	+	0	NA	intron (NM_001346768, intron 15 of 40)	intron (NM_001346768, intron 15 of 40)	27330	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
44.4491	chr2	65291985	65292484	+	0	NA	intron (NR_134966, intron 1 of 5)	intron (NR_134966, intron 1 of 5)	8739	NM_015147	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
10.8513	chr20	61411720	61412219	+	0	NA	Intergenic	MER67C|LTR|ERV1	-3761	NR_046225	100652730	Hs.254951	NR_046224		LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
19.9568-2	chr2	156381644	156382143	+	0	NA	Intergenic	MER130|Unknown?|Unknown?	729550	NR_110249	101929378	Hs.171192	NR_110249	ENSG00000226383	LINC01876	-	long intergenic non-protein coding RNA 1876	ncRNA
13.0103-3	chr4	65748039	65748538	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	121930	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
28.1816-2	chr2	174580126	174580625	+	0	NA	Intergenic	Intergenic	248572	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
16.3639	chr18	33957563	33958062	+	0	NA	intron (NM_025135, intron 3 of 24)	intron (NM_025135, intron 3 of 24)	80153	NM_001281740	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
20.0174	chr2	11220396	11220895	+	0	NA	Intergenic	Intergenic	51657	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
13.9041	chr17	26832489	26832988	+	0	NA	Intergenic	Intergenic	-18221	NM_003593	8456	Hs.58611	NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|WHN	forkhead box N1	protein-coding
24.7496-2	chr1	77799093	77799592	+	0	NA	intron (NM_174858, intron 5 of 13)	MER58A|DNA|hAT-Charlie	51055	NM_012093	26289	Hs.559718	NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
12.7984-2	chr1	249124674	249125173	+	0	NA	Intergenic	SVA_B|Other|Other	4347	NR_036070	100422879		NR_036070	ENSG00000264500	MIR3124	mir-3124	microRNA 3124	ncRNA
14.0121	chr2	39015555	39016054	+	0	NA	Intergenic	Intergenic	10477	NM_024775	79833	Hs.143818	NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
30.0349	chr12	40564345	40564844	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-54219	NM_198578	120892	Hs.187636	NM_198578	ENSG00000188906	LRRK2	AURA17|DARDARIN|PARK8|RIPK7|ROCO2	leucine rich repeat kinase 2	protein-coding
11.7393	chr12	28178959	28179458	+	0	NA	Intergenic	MIRc|SINE|MIR	-54292	NM_198965	5744	Hs.591159	NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
15.0446-3	chr14	51672249	51672748	+	0	NA	Intergenic	Intergenic	-34388	NM_030755	81542	Hs.125221	NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
12.2988	chr9	132209315	132209814	+	0	NA	Intergenic	Intergenic	-41375	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
45.1145	chr7	81305782	81306281	+	0	NA	intron (NR_126025, intron 1 of 10)	intron (NR_126025, intron 1 of 10)	14691	NR_126025	100128317	Hs.571267	NR_126025	ENSG00000233491	LOC100128317	-	uncharacterized LOC100128317	ncRNA
15.4516-4	chr2	42303898	42304397	+	0	NA	Intergenic	Intergenic	28986	NM_138370	91461	Hs.408542	NM_138370	ENSG00000162878	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
12.0135	chr22	21794330	21794829	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	22886	NM_015094	23119	Hs.632767	NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
10.5799-2	chr3	73143100	73143599	+	0	NA	Intergenic	Intergenic	32539	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
16.517-2	chr5	38181990	38182489	+	0	NA	Intergenic	LTR79|LTR|ERVL	33657	NR_134272	101929745	Hs.374715	NR_134272	ENSG00000248461	LINC02119	-	long intergenic non-protein coding RNA 2119	ncRNA
19.6658-3	chr7	75843553	75844052	+	0	NA	intron (NM_001291831, intron 1 of 16)	intron (NM_001291831, intron 1 of 16)	12591	NM_001110199	222183	Hs.511025	NM_001039212	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
27.0333	chr14	44924779	44925278	+	0	NA	Intergenic	Intergenic	51471	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
19.3554-2	chr17	27476340	27476839	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-9192	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
21.9382	chr3	69343710	69344209	+	0	NA	intron (NM_015123, intron 4 of 22)	intron (NM_015123, intron 4 of 22)	91496	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
33.2975	chr12	26775435	26775934	+	0	NA	intron (NM_002223, intron 24 of 56)	intron (NM_002223, intron 24 of 56)	210447	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
11.296	chr2	126189392	126189891	+	0	NA	Intergenic	Intergenic	-1223870	NM_001256584	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
32.1681	chr3	126709588	126710087	+	0	NA	intron (NM_032242, intron 1 of 30)	intron (NM_032242, intron 1 of 30)	2400	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
17.3993	chr15	27364777	27365276	+	0	NA	intron (NM_033223, intron 3 of 9)	MLT1E1A|LTR|ERVL-MaLR	41440	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
15.4363	chr12	131061715	131062214	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-59554	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
13.851	chr9	37692643	37693142	+	0	NA	intron (NM_014907, intron 2 of 15)	intron (NM_014907, intron 2 of 15)	41840	NM_014907	22844	Hs.163990	NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding
27.5449	chr3	143049939	143050438	+	0	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	-10900	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
18.8273	chr20	20450183	20450682	+	0	NA	intron (NM_020343, intron 37 of 39)	intron (NM_020343, intron 37 of 39)	101667	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
14.2597	chr2	127684521	127685020	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	28308	NR_136239	101929926	Hs.98984	NM_001322244	ENSG00000237524	LOC101929926	-	uncharacterized LOC101929926	protein-coding
18.2391-4	chr1	226776573	226777072	+	0	NA	intron (NM_001003665, intron 1 of 3)	intron (NM_001003665, intron 1 of 3)	40321	NM_001003665	375057	Hs.116827	NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
22.1753-5	chr8	51298091	51298590	+	0	NA	intron (NM_001321778, intron 2 of 16)	ERVL-B4-int|LTR|ERVL	221649	NM_001321778	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
30.7263-3	chr1	211722639	211723138	+	0	NA	Intergenic	Intergenic	29211	NM_021194	7779	Hs.519469	NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
16.2893-2	chr7	124701111	124701610	+	0	NA	intron (NR_125718, intron 4 of 10)	L1PA8|LINE|L1	-123263	NR_110188	101928283	Hs.566650	NR_110188	ENSG00000237764	LOC101928283	-	uncharacterized LOC101928283	ncRNA
10.2549-2	chr9	34475216	34475715	+	0	NA	intron (NM_001281428, intron 1 of 19)	intron (NM_001281428, intron 1 of 19)	16715	NM_001281428	27019	Hs.112667	NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD	dynein axonemal intermediate chain 1	protein-coding
10.1728	chr10	72727677	72728176	+	0	NA	Intergenic	MIRc|SINE|MIR	29116	NR_134314	105378349	Hs.119164	NR_134313	ENSG00000259267	LOC105378349	-	uncharacterized LOC105378349	ncRNA
14.7496-2	chr20	31427422	31427921	+	0	NA	intron (NM_012325, intron 5 of 6)	intron (NM_012325, intron 5 of 6)	19972	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
27.0997-2	chr17	43367463	43367962	+	0	NA	intron (NM_003954, intron 2 of 15)	intron (NM_003954, intron 2 of 15)	26718	NM_003954	9020	Hs.404183	NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
10.8513-2	chr2	217244902	217245401	+	0	NA	Intergenic	Intergenic	-8401	NM_020814	57574	Hs.170388	NM_020814	ENSG00000144583	MARCH4	MARCH-IV|RNF174	membrane associated ring-CH-type finger 4	protein-coding
12.7901	chr13	50336541	50337040	+	0	NA	intron (NM_002267, intron 1 of 16)	SVA_C|Other|Other	30267	NM_002267	3839	Hs.527919	NM_002267	ENSG00000102753	KPNA3	IPOA4|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
11.4509	chr3	197233891	197234390	+	0	NA	Intergenic	Intergenic	48718	NM_203314	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
15.7349	chr12	108784594	108785093	+	0	NA	Intergenic	Intergenic	-51749	NM_001142343	1240	Hs.197143	NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemerin chemokine-like receptor 1	protein-coding
97.8516	chr2	13756666	13757165	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-609777	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
15.3313	chr10	28606613	28607112	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-14867	NR_134518	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	membrane palmitoylated protein 7	protein-coding
15.6703-3	chr4	165927410	165927909	+	0	NA	Intergenic	Intergenic	-25492	NM_152620	166655	Hs.368004	NM_152620	ENSG00000176979	TRIM60	RNF129|RNF33	tripartite motif containing 60	protein-coding
15.5284-2	chr1	202137177	202137676	+	0	NA	non-coding (NR_002930, exon 1 of 22)	non-coding (NR_002930, exon 1 of 22)	247	NR_002930	148713	Hs.523870	NR_002930	ENSG00000243323	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase, receptor type V, pseudogene	pseudo
14.9485-3	chr9	45486473	45486972	+	0	NA	Intergenic	L1PA13|LINE|L1	-481432	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
11.0458	chr8	131713853	131714352	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-258196	NM_001247996	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
10.0393	chr7	73210920	73211419	+	0	NA	Intergenic	SVA_D|Other|Other	-26569	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
17.2354	chr6	69436137	69436636	+	0	NA	intron (NM_001704, intron 3 of 31)	intron (NM_001704, intron 3 of 31)	90754	NM_001704	577	Hs.13261	NM_001704	ENSG00000135298	ADGRB3	BAI3	adhesion G protein-coupled receptor B3	protein-coding
22.161-2	chrX	37968697	37969196	+	0	NA	intron (NM_001163335, intron 13 of 17)	intron (NM_001163335, intron 13 of 17)	76159	NM_001163334	94122	Hs.662334	NM_138780	ENSG00000147041	SYTL5	slp5	synaptotagmin like 5	protein-coding
20.9691	chr9	129890688	129891187	+	0	NA	intron (NM_001190728, intron 7 of 16)	intron (NM_001190728, intron 7 of 16)	-5893	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
20.4191	chr11	44010742	44011241	+	0	NA	Intergenic	Intergenic	46885	NM_001145033	387763	Hs.530443	NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
29.4692	chr2	1597311	1597810	+	0	NA	Intergenic	Intergenic	150759	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
19.6257-2	chr12	26439023	26439522	+	0	NA	Intergenic	Intergenic	90766	NM_005086	8082	Hs.183428	NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
11.6749	chr2	2870239	2870738	+	0	NA	Intergenic	Intergenic	259310	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
10.4576	chr5	43522689	43523188	+	0	NA	Intergenic	SVA_D|Other|Other	-7665	NM_198566	375444	Hs.661641	NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
27.3518-2	chr1	55515832	55516331	+	0	NA	intron (NM_174936, intron 3 of 11)	intron (NM_174936, intron 3 of 11)	10186	NR_110451	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
16.1618-2	chr5	33607889	33608388	+	0	NA	intron (NM_030955, intron 16 of 23)	MER21B|LTR|ERVL	167256	NM_001258438	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
50.3621	chr7	121670244	121670743	+	0	NA	intron (NM_002851, intron 14 of 29)	intron (NM_002851, intron 14 of 29)	113851	NM_005763	10157	Hs.156738	NM_005763	ENSG00000008311	AASS	LKR/SDH|LKRSDH|LORSDH	aminoadipate-semialdehyde synthase	protein-coding
11.2148	chr5	18310328	18310827	+	0	NA	Intergenic	SVA_D|Other|Other	503194	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
22.2548-2	chr9	137725387	137725886	+	0	NA	intron (NM_001278074, intron 64 of 65)	intron (NM_001278074, intron 64 of 65)	15579	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
11.5552-3	chr7	105699298	105699797	+	0	NA	Intergenic	Intergenic	53244	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
17.6195-5	chr20	23976189	23976688	+	0	NA	Intergenic	Intergenic	-7022	NM_178311	92086	Hs.355394	NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
12.2915-2	chr2	183695804	183696303	+	0	NA	Intergenic	Intergenic	35445	NM_001463	2487	Hs.128453	NM_001463	ENSG00000162998	FRZB	FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ	frizzled-related protein	protein-coding
15.544-2	chr1	23034442	23034941	+	0	NA	Intergenic	L2b|LINE|L2	-2640	NM_004442	2048	Hs.380705	NM_004442	ENSG00000133216	EPHB2	CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
54.4855	chr14	91686689	91687188	+	0	NA	intron (NM_001286471, intron 13 of 13)	intron (NM_001286471, intron 13 of 13)	23914	NM_001177676	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
41.3966	chrX	152822077	152822576	+	0	NA	intron (NM_021949, intron 13 of 20)	intron (NM_021949, intron 13 of 20)	20746	NM_001001344	492	Hs.533956	NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
13.8195-3	chr11	121005581	121006080	+	0	NA	intron (NM_005422, intron 9 of 22)	intron (NM_005422, intron 9 of 22)	32455	NM_005422	7007	Hs.248162	NM_005422	ENSG00000109927	TECTA	DFNA12|DFNA8|DFNB21	tectorin alpha	protein-coding
46.3827	chr2	122705185	122705684	+	0	NA	Intergenic	Intergenic	192313	NM_001261401	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
20.0349-2	chr2	120140845	120141344	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	15843	NM_001079863	1622	Hs.78888	NM_020548	ENSG00000155368	DBI	ACBD1|ACBP|CCK-RP|EP	diazepam binding inhibitor, acyl-CoA binding protein	protein-coding
114.134	chr8	128836318	128836817	+	0	NA	intron (NR_003367, intron 1 of 8)	MIRb|SINE|MIR	28359	NR_031609	100302185		NR_031609	ENSG00000249859	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
49.8716	chr2	80277358	80277857	+	0	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	-183898	NR_107047	102465877		NR_107047	ENSG00000276917	MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
16.1798-5	chr6	66879808	66880307	+	0	NA	Intergenic	SVA_D|Other|Other	382285	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	solute carrier family 25 member 51 pseudogene 1	pseudo
10.5061	chr2	20742651	20743150	+	0	NA	Intergenic	Intergenic	49408	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
11.6558	chr1	204901742	204902241	+	0	NA	intron (NM_001160332, intron 2 of 27)	intron (NM_001160332, intron 2 of 27)	-11363	NM_001160331	23114	Hs.13349	NM_015090	ENSG00000163531	NFASC	NF|NRCAML	neurofascin	protein-coding
10.7212	chr12	90969718	90970217	+	0	NA	Intergenic	L1MA3|LINE|L1	282872	NR_135018	105369893	Hs.577777	NR_135018		LOC105369893	-	uncharacterized LOC105369893	ncRNA
20.8355-2	chr9	42206504	42207003	+	0	NA	Intergenic	L1PA13|LINE|L1	-161550	NM_001012421	441430	Hs.632663	NM_001012421	ENSG00000183148	ANKRD20A2	-	ankyrin repeat domain 20 family member A2	protein-coding
10.0612	chr11	44628069	44628568	+	0	NA	intron (NM_002231, intron 6 of 9)	MIRb|SINE|MIR	41177	NM_002231	3732	Hs.527778	NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
18.3863	chr9	108822121	108822620	+	0	NA	Intergenic	MER52A|LTR|ERV1	365564	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
14.3415	chr4	152786380	152786879	+	0	NA	Intergenic	Intergenic	-104454	NM_004564	5188	Hs.119316	NM_004564	ENSG00000059691	GATB	HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
16.9037-2	chrX	49697429	49697928	+	0	NA	intron (NM_001127899, intron 3 of 14)	intron (NM_001127899, intron 3 of 14)	10453	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
18.729	chr11	74036629	74037128	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-14157	NM_001288748	283208	Hs.660541	NM_182904	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase subunit alpha 3	protein-coding
19.8297-2	chr20	21246095	21247001	+	0	NA	Intergenic	Intergenic	-37374	NM_012255	22803	Hs.255932	NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
10.0436-2	chr5	168527511	168528010	+	0	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	87528	NR_109897	728095	Hs.145601	NR_109897		LOC728095	-	uncharacterized LOC728095	ncRNA
10.1909-2	chr14	57219121	57219620	+	0	NA	Intergenic	Intergenic	53011	NM_172337	5015	Hs.288655	NM_021728	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding
20.2411	chr1	156687165	156687664	+	0	NA	Intergenic	MIR|SINE|MIR	10817	NM_001303095	81875	Hs.301904	NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
14.9485-6	chr22	29742620	29743119	+	0	NA	intron (NM_001127, intron 11 of 22)	MLT1K|LTR|ERVL-MaLR	-13613	NR_037426	100500833		NR_037426	ENSG00000280968	MIR3653	mir-3653	microRNA 3653	ncRNA
11.8177	chr7	37798127	37798626	+	0	NA	Intergenic	Intergenic	74998	NM_001329994	353345	Hs.563492	NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
25.5752	chr10	118163284	118163783	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-23891	NM_001011709	119548	Hs.276724	NM_001011709	ENSG00000203837	PNLIPRP3	-	pancreatic lipase related protein 3	protein-coding
21.8111-2	chr19	4449096	4449595	+	0	NA	intron (NM_001171091, intron 4 of 10)	intron (NM_001171091, intron 4 of 10)	3370	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
15.6225	chr7	95865327	95865826	+	0	NA	intron (NM_014251, intron 3 of 17)	intron (NM_014251, intron 3 of 17)	-16508	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
21.2321	chr11	71713201	71713700	+	0	NA	TTS (NM_001286561)	TTS (NM_001286561)	2477	NM_001145055	10068	Hs.591967	NM_005699	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
15.9688-4	chr5	14251408	14251907	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	107846	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
11.4874	chr3	160094340	160094839	+	0	NA	intron (NM_020800, intron 4 of 19)	MLT1F1|LTR|ERVL-MaLR	6965	NM_001190242	57560	Hs.478095	NM_020800	ENSG00000068885	IFT80	ATD2|SRTD2|WDR56	intraflagellar transport 80	protein-coding
12.2915-4	chr1	18606110	18606609	+	0	NA	intron (NM_032880, intron 2 of 9)	intron (NM_032880, intron 2 of 9)	172119	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding
10.07	chr5	54866911	54867410	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-36254	NR_103485	8611	Hs.696231	NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
14.8945-2	chr2	220648881	220649380	+	0	NA	Intergenic	LTR1B|LTR|ERV1	122156	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
14.9485-7	chr12	104297783	104298282	+	0	NA	intron (NR_027249, intron 4 of 15)	MLT1J2|LTR|ERVL-MaLR	25957	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
35.9688	chr15	102040106	102040605	+	0	NA	Intergenic	Intergenic	-10168	NM_138319	5046	Hs.498494	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
10.7058	chr22	39631227	39631810	+	0	NA	intron (NM_002608, intron 2 of 6)	intron (NM_002608, intron 2 of 6)	5396	NM_033016	5155	Hs.1976	NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
28.0134	chr7	127353777	127354276	+	0	NA	intron (NM_014390, intron 9 of 23)	intron (NM_014390, intron 9 of 23)	61983	NM_014390	27044	Hs.122523	NM_014390	ENSG00000197157	SND1	TDRD11|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
11.2668-3	chr20	1154305	1154804	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	10563	NM_018354	55321	Hs.516834	NM_018354	ENSG00000125895	TMEM74B	C20orf46	transmembrane protein 74B	protein-coding
13.7986-4	chr3	122683594	122684093	+	0	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	11138	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
15.6703-2	chr13	52187672	52188171	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	29437	NM_052950	115825	Hs.46506	NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
21.8111-3	chr1	22940345	22940844	+	0	NA	Intergenic	Intergenic	19265	NR_106742	102466615		NR_106742	ENSG00000276835	MIR6127	hsa-mir-6127	microRNA 6127	ncRNA
10.8991	chr3	129221844	129222343	+	0	NA	intron (NM_001280546, intron 18 of 27)	intron (NM_001280546, intron 18 of 27)	-25389	NM_000539	6010	Hs.247565	NM_000539	ENSG00000163914	RHO	CSNBAD1|OPN2|RP4	rhodopsin	protein-coding
11.8709	chr4	111775302	111775801	+	0	NA	Intergenic	Intergenic	-212272	NM_153427	5308	Hs.643588	NM_000325	ENSG00000164093	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
31.8376	chr2	26504033	26504532	+	0	NA	intron (NM_000183, intron 10 of 15)	intron (NM_000183, intron 10 of 15)	36666	NM_000183	3032	Hs.515848	NM_000183	ENSG00000138029	HADHB	ECHB|MSTP029|MTPB|TP-BETA	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit	protein-coding
17.0553-3	chr5	145895492	145895991	+	0	NA	promoter-TSS (NM_194251)	promoter-TSS (NM_194251)	-65	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
18.0688	chr22	19085065	19085564	+	0	NA	intron (NM_005137, intron 1 of 9)	intron (NM_005137, intron 1 of 9)	24653	NM_005137	9993	Hs.517357	NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
42.2695	chr2	161530604	161531103	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-180535	NM_016836	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
19.2812-5	chr4	100279842	100280341	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-5889	NR_133005	126	Hs.654537	NM_000669	ENSG00000248144	ADH1C	ADH3	alcohol dehydrogenase 1C (class I), gamma polypeptide	protein-coding
17.0774-4	chr1	241626566	241627065	+	0	NA	Intergenic	Intergenic	56270	NM_000143	2271	Hs.592490	NM_000143	ENSG00000091483	FH	FMRD|HLRCC|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
23.7572	chr3	129004897	129005396	+	0	NA	intron (NM_001006109, intron 2 of 6)	MLT1A0|LTR|ERVL-MaLR	7329	NM_001006109	56941	Hs.458320	NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine (hmC) binding, ES cell-specific	protein-coding
16.8613-2	chr8	119042988	119043487	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	80821	NM_000127	2131	Hs.492618	NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
15.4821	chr2	138837449	138837948	+	0	NA	Intergenic	MER21B|LTR|ERVL	-21756	NR_135526	105373635		NR_135526	ENSG00000224231	LINC01832	-	long intergenic non-protein coding RNA 1832	ncRNA
14.8945	chr12	130947177	130947676	+	0	NA	intron (NM_015347, intron 3 of 18)	LTR82A|LTR|ERVL	54984	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
14.9485-2	chr13	54333151	54333650	+	0	NA	Intergenic	Intergenic	-56154	NR_047488	100861552	Hs.224691	NR_047488	ENSG00000261517	LINC00558	-	long intergenic non-protein coding RNA 558	ncRNA
29.1721-2	chr5	151314578	151315077	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10430	NM_001146040	2741	Hs.121490	NM_000171	ENSG00000145888	GLRA1	HKPX1|STHE	glycine receptor alpha 1	protein-coding
33.7779	chr3	156666259	156666758	+	0	NA	intron (NM_001004316, intron 6 of 12)	L1PREC2|LINE|L1	122360	NM_001193283	389170	Hs.478048	NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
31.6052	chr1	234835860	234836359	+	0	NA	Intergenic	Intergenic	-23680	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
28.7943-2	chr17	66874665	66875164	+	0	NA	intron (NM_001288985, intron 32 of 39)	intron (NM_001288985, intron 32 of 39)	76619	NM_007168	10351	Hs.58351	NM_007168	ENSG00000141338	ABCA8	-	ATP binding cassette subfamily A member 8	protein-coding
14.7366	chr8	101450409	101450908	+	0	NA	Intergenic	Intergenic	55667	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
26.4589	chr1	236081298	236081797	+	0	NA	Intergenic	Intergenic	-34539	NM_001301365	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
20.4866	chr3	143848330	143848829	+	0	NA	Intergenic	Intergenic	156412	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
23.1426	chr12	117529814	117530313	+	0	NA	intron (NR_031766, intron 1 of 7)	intron (NR_031766, intron 1 of 7)	7188	NM_017899	54997	Hs.525709	NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
10.9098	chr13	108370131	108370630	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	117426	NR_046848	100874375	Hs.653972	NR_046848		FAM155A-IT1	-	FAM155A intronic transcript 1	ncRNA
11.5614	chr1	248100165	248100664	+	0	NA	promoter-TSS (NM_001304535)	promoter-TSS (NM_001304535)	83	NM_175911	284521	Hs.372936	NM_175911	ENSG00000196071	OR2L13	OR2L14	olfactory receptor family 2 subfamily L member 13	protein-coding
17.5945-3	chr3	58668540	58669039	+	0	NA	Intergenic	Intergenic	-16228	NM_138805	131177	Hs.61265	NM_138805	ENSG00000198643	FAM3D	EF7|OIT1	family with sequence similarity 3 member D	protein-coding
13.9147-3	chr8	140445818	140446317	+	0	NA	Intergenic	Intergenic	269232	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
29.393	chr14	73213027	73213526	+	0	NA	intron (NM_012074, intron 3 of 9)	intron (NM_012074, intron 3 of 9)	146081	NM_001280544	8110	Hs.162868	NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4	double PHD fingers 3	protein-coding
14.9485	chr11	12540420	12540919	+	0	NA	intron (NM_018222, intron 12 of 12)	intron (NM_018222, intron 12 of 12)	141643	NM_018222	55742	Hs.432914	NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
15.2143	chr8	19601416	19601915	+	0	NA	Intergenic	Intergenic	-61404	NR_024040	55790	Hs.613729	NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
12.7084-4	chr3	141688467	141688966	+	0	NA	intron (NM_001178139, intron 9 of 12)	intron (NM_001178139, intron 9 of 12)	30513	NM_001178140	7029	Hs.379018	NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
20.1011-3	chr10	112439394	112439893	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	35488	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
15.0446-5	chr11	95069096	95069595	+	0	NA	Intergenic	LTR72|LTR|ERV1	-103640	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
16.4207	chr6	141691833	141692332	+	0	NA	Intergenic	Intergenic	687131	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
13.7986-5	chrX	48448085	48448584	+	0	NA	Intergenic	LTR75|LTR|ERVL	-7532	NM_001347219	64743	Hs.521973	NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
13.6552	chr9	132881923	132882422	+	0	NA	intron (NM_001136557, intron 16 of 19)	AluJb|SINE|Alu	24326	NR_135124	401554	Hs.522437	NR_135124	ENSG00000196979	LOC401554	-	uncharacterized LOC401554	ncRNA
14.3771-8	chr6	122101336	122101835	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	344862	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
12.3807	chr3	107819750	107820249	+	0	NA	Intergenic	Intergenic	-10064	NM_001777	961	Hs.446414	NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
21.0513	chr15	36399000	36399499	+	0	NA	Intergenic	Intergenic	180192	NR_039735	100616293		NR_039735	ENSG00000265098	MIR4510	mir-4510	microRNA 4510	ncRNA
16.6959-4	chr16	72909078	72909577	+	0	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	172947	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
14.0012-2	chr12	117766353	117766852	+	0	NA	intron (NM_001204218, intron 2 of 29)	Tigger3a|DNA|TcMar-Tigger	-19387	NM_001204214	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
12.0482	chr8	62703456	62703955	+	0	NA	Intergenic	Intergenic	76358	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
51.6052	chr4	19850516	19851015	+	0	NA	Intergenic	Intergenic	-402763	NM_001289136	9353	Hs.29802	NM_004787	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit guidance ligand 2	protein-coding
23.5853-2	chr2	18432563	18433062	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	309147	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
26.5758-3	chr3	175366998	175367497	+	0	NA	intron (NM_207015, intron 11 of 13)	MLT1B|LTR|ERVL-MaLR	126874	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
13.9686	chr1	53829005	53829504	+	0	NA	Intergenic	LTR33|LTR|ERVL	35349	NR_131923	105378732	Hs.118609	NR_131923	ENSG00000225675	LINC01771	-	long intergenic non-protein coding RNA 1771	ncRNA
15.0864	chr1	94166167	94166666	+	0	NA	intron (NM_001261408, intron 3 of 13)	intron (NM_001261408, intron 3 of 13)	-19022	NM_003567	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
11.8575	chrX	9526508	9527007	+	0	NA	intron (NM_001139468, intron 3 of 17)	intron (NM_001139468, intron 3 of 17)	93556	NM_005647	6907	Hs.495656	NM_005647	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin beta like 1X-linked	protein-coding
13.8828-2	chr9	137122624	137123123	+	0	NA	Intergenic	Intergenic	-93187	NR_023344	100151684	Hs.545589	NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear (U12-dependent splicing)	snRNA
16.7778-3	chr3	123091212	123091711	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	43728	NM_001199642	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
11.2668	chr3	15382535	15383034	+	0	NA	5' UTR (NM_001018009, exon 1 of 9)	5' UTR (NM_001018009, exon 1 of 9)	117	NM_001018009	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
16.3639-2	chr14	59298605	59299104	+	0	NA	intron (NR_110547, intron 1 of 5)	intron (NR_110547, intron 1 of 5)	3848	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
38.8941	chr8	8360847	8361346	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-121752	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related kinase activating pseudokinase 1	protein-coding
24.034-4	chr5	170187065	170187564	+	0	NA	Intergenic	Intergenic	-23409	NM_014211	2568	Hs.26225	NM_014211	ENSG00000094755	GABRP	-	gamma-aminobutyric acid type A receptor pi subunit	protein-coding
16.6154	chr2	114393953	114394452	+	0	NA	intron (NM_007082, intron 5 of 9)	MLT1G3|LTR|ERVL-MaLR	8071	NM_001306160	11159	Hs.446425	NM_007082	ENSG00000144134	RABL2A	-	RAB, member of RAS oncogene family-like 2A	protein-coding
38.6967	chr3	17221133	17221632	+	0	NA	intron (NM_014744, intron 19 of 21)	intron (NM_014744, intron 19 of 21)	246694	NR_037465	100500913		NR_037465	ENSG00000154822	MIR3714	-	microRNA 3714	ncRNA
14.9894	chr5	1221158	1221657	+	0	NA	exon (NM_001003841, exon 11 of 12)	exon (NM_001003841, exon 11 of 12)	-4063	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
11.7457-2	chr20	49001801	49002300	+	0	NA	Intergenic	Intergenic	-64171	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
15.7675-8	chr2	179773465	179773964	+	0	NA	intron (NM_173648, intron 7 of 23)	intron (NM_173648, intron 7 of 23)	-101564	NM_003319	7273	Hs.134602	NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD	titin	protein-coding
34.2136-2	chr12	55411251	55411750	+	0	NA	Intergenic	Intergenic	-2229	NM_021191	58158	Hs.591024	NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
34.2136	chr4	140722893	140723392	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	136220	NM_001204367	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
23.0892	chr2	187686946	187687445	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	26702	NM_182521	151112	Hs.375054	NM_182521	ENSG00000163012	ZSWIM2	MEX|ZZZ2	zinc finger SWIM-type containing 2	protein-coding
10.804-2	chr2	121507202	121507701	+	0	NA	Intergenic	Intergenic	-47416	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
33.7986	chr2	227568166	227568665	+	0	NA	Intergenic	Intergenic	-44906	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
11.0018-2	chr10	22042721	22043220	+	0	NA	Intergenic	Intergenic	219396	NM_001195626	8028	Hs.30385	NM_004641	ENSG00000078403	MLLT10	AF10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding
27.67	chr13	91744739	91745238	+	0	NA	Intergenic	LTR79|LTR|ERVL	-1295	NR_104057	101930747	Hs.112745	NR_104057		LINC00380	-	long intergenic non-protein coding RNA 380	ncRNA
20.5306	chr9	81631672	81632171	+	0	NA	Intergenic	Intergenic	128660	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
11.7457-3	chr22	47526717	47527216	+	0	NA	intron (NR_104292, intron 13 of 13)	intron (NR_104292, intron 13 of 13)	-214355	NR_144462	339685	Hs.434351	NR_038922		LOC339685	-	uncharacterized LOC339685	ncRNA
10.3953-2	chr3	72307858	72308357	+	0	NA	Intergenic	Intergenic	107699	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
25.0031	chr5	14296767	14297266	+	0	NA	intron (NM_007118, intron 6 of 56)	intron (NM_007118, intron 6 of 56)	153205	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
38.5387	chr2	33760420	33760919	+	0	NA	intron (NM_015376, intron 10 of 16)	intron (NM_015376, intron 10 of 16)	21727	NM_015376	25780	Hs.143674	NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
12.4413-3	chr12	55402972	55403471	+	0	NA	Intergenic	Intergenic	-10508	NM_021191	58158	Hs.591024	NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
17.5203	chr20	31999004	31999503	+	0	NA	intron (NM_003098, intron 5 of 7)	L2c|LINE|L2	-9878	NM_001278169	51654	Hs.435952	NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
49.6658	chr14	62396632	62397131	+	0	NA	Intergenic	Intergenic	-65660	NM_031914	83851	Hs.404139	NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r|yt14r	synaptotagmin 16	protein-coding
16.1798-8	chr2	174578538	174579037	+	0	NA	Intergenic	L2b|LINE|L2	250160	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
15.986-2	chr1	70952978	70953477	+	0	NA	Intergenic	Intergenic	76326	NM_153742	1491	Hs.19904	NM_001902	ENSG00000116761	CTH	-	cystathionine gamma-lyase	protein-coding
14.1117	chr20	5748128	5748627	+	0	NA	intron (NM_001303477, intron 2 of 3)	intron (NM_001303477, intron 2 of 3)	17344	NM_001303478	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
19.8297-4	chr12	57583739	57584238	+	0	NA	intron (NM_002332, intron 42 of 88)	intron (NM_002332, intron 42 of 88)	-4299	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
36.6756	chr5	10932915	10933414	+	0	NA	Intergenic	Intergenic	-171777	NM_004394	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
27.167	chr6	94173783	94174282	+	0	NA	Intergenic	LTR33|LTR|ERVL	-44732	NM_001288630	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
14.6725	chr4	176303305	176303804	+	0	NA	Intergenic	L1MDa|LINE|L1	405273	NM_001261448	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
18.2391-3	chrX	9846407	9846906	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-33756	NM_001320664	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
23.2606	chr3	77525646	77526145	+	0	NA	intron (NM_001128929, intron 1 of 24)	intron (NM_001128929, intron 1 of 24)	378732	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
16.5956	chr13	44942026	44942525	+	0	NA	Intergenic	X6B_LINE|LINE|CR1	-5511	NM_001346980	387923	Hs.377972	NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
10.7624-3	chr8	138603792	138604291	+	0	NA	Intergenic	Intergenic	-178210	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
20.7314	chr1	46751647	46752146	+	0	NA	exon (NM_006369, exon 4 of 10)	exon (NM_006369, exon 4 of 10)	17142	NM_006369	10489	Hs.144941	NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
18.4466-4	chr12	56111400	56111899	+	0	NA	intron (NM_001487, intron 2 of 3)	intron (NM_001487, intron 2 of 3)	1573	NR_037657	2647	Hs.94672	NM_001487	ENSG00000135441	BLOC1S1	BLOS1|BORCS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex 1 subunit 1	protein-coding
17.0553	chr2	205230502	205231001	+	0	NA	Intergenic	Intergenic	-179765	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
16.3451-2	chr2	206524537	206525036	+	0	NA	Intergenic	Intergenic	-22438	NM_018534	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
29.393-2	chr22	40401320	40401819	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	10616	NM_138435	113828	Hs.197680	NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
26.6354	chr13	53323452	53323951	+	0	NA	Intergenic	Intergenic	-9754	NM_007015	11061	Hs.421391	NM_007015	ENSG00000136110	CNMD	BRICD3|CHM-I|CHM1|LECT1|MYETS1	chondromodulin	protein-coding
26.073-3	chr1	180163838	180164337	+	0	NA	intron (NM_001004128, intron 11 of 12)	intron (NM_001004128, intron 11 of 12)	-3057	NR_026900	200058	Hs.719176	NR_026900		FLJ23867	-	uncharacterized protein FLJ23867	ncRNA
13.5262	chr8	37376763	37377262	+	0	NA	intron (NR_121621, intron 1 of 2)	intron (NR_121621, intron 1 of 2)	1892	NR_121621	100507420	Hs.105962	NR_121620		LINC01605	-	long intergenic non-protein coding RNA 1605	ncRNA
17.8516-2	chr6	158332280	158332779	+	0	NA	intron (NM_016224, intron 9 of 17)	intron (NM_016224, intron 9 of 17)	-70359	NM_003898	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
17.1897	chr11	95770418	95770917	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-113296	NM_201278	8898	Hs.181326	NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
22.2841	chr9	107581988	107582487	+	0	NA	exon (NM_005502, exon 21 of 50)	exon (NM_005502, exon 21 of 50)	56215	NR_130759	55335	Hs.429294	NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
30.9528	chr6	155334543	155335042	+	0	NA	Intergenic	Intergenic	-76631	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
18.0134-2	chr16	75313160	75313659	+	0	NA	Intergenic	Intergenic	-11458	NM_001170715	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
11.1182	chr5	44730994	44731493	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	77652	NR_109862	100506674	Hs.575213	NR_109862		BRCAT54	-	breast cancer-associated transcript 54	ncRNA
28.9963	chr2	137062950	137063449	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-187474	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
10.3058	chr7	82754765	82755264	+	0	NA	intron (NM_014510, intron 3 of 19)	SVA_B|Other|Other	37183	NM_033026	27445	Hs.12376	NM_014510	ENSG00000186472	PCLO	ACZ|PCH3	piccolo presynaptic cytomatrix protein	protein-coding
19.914-2	chr2	15383155	15383654	+	0	NA	intron (NM_015909, intron 44 of 51)	MLT1J1|LTR|ERVL-MaLR	318068	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
17.6195-4	chr7	47223676	47224175	+	0	NA	Intergenic	L1ME3D|LINE|L1	397817	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
12.4718-2	chr14	77252874	77253373	+	0	NA	promoter-TSS (NR_104183)	promoter-TSS (NR_104183)	-56	NR_104184	100506603	Hs.673984	NR_104183	ENSG00000258301	LOC100506603	-	uncharacterized LOC100506603	ncRNA
14.5593	chr3	138178450	138178949	+	0	NA	intron (NM_031913, intron 5 of 22)	intron (NM_031913, intron 5 of 22)	25284	NM_031913	83850	Hs.477711	NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
31.7783	chr8	135998780	135999279	+	0	NA	Intergenic	L2|LINE|L2	136851	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
24.034-5	chr7	128395775	128396274	+	0	NA	intron (NM_001130674, intron 3 of 6)	intron (NM_001130674, intron 3 of 6)	16678	NM_001199672	813	Hs.7753	NM_001219	ENSG00000128595	CALU	-	calumenin	protein-coding
14.8545	chr3	143462988	143463487	+	0	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	104136	NM_173653	285195	Hs.302257	NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
17.0997	chr12	94414304	94414803	+	0	NA	Intergenic	Intergenic	-77171	NR_135017	105369911	Hs.577495	NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
11.1919	chr21	31806270	31806769	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	3925	NM_181600	284827	Hs.553677	NM_181600	ENSG00000186971	KRTAP13-4	KAP13.4	keratin associated protein 13-4	protein-coding
18.5699	chr22	43897655	43898154	+	0	NA	intron (NM_001044370, intron 5 of 6)	intron (NM_001044370, intron 5 of 6)	-14230	NR_046563	100874197	Hs.627997	NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
12.5181	chr19	1977009	1977508	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-22710	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
26.925	chr15	99804981	99805480	+	0	NA	intron (NR_135759, intron 2 of 7)	L2a|LINE|L2	7500	NR_073383	7190	Hs.656611	NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
10.7469-4	chr2	182322619	182323118	+	0	NA	intron (NM_000885, intron 1 of 27)	CpG	1249	NM_001316312	3676	Hs.72981	NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
29.393-3	chr11	112292531	112293030	+	0	NA	Intergenic	Intergenic	-60175	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
10.804	chr1	70953744	70954243	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	77092	NM_153742	1491	Hs.19904	NM_001902	ENSG00000116761	CTH	-	cystathionine gamma-lyase	protein-coding
24.2713	chr2	168689237	168689736	+	0	NA	intron (NM_020981, intron 1 of 1)	intron (NM_020981, intron 1 of 1)	14304	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	beta-1,3-galactosyltransferase 1	protein-coding
22.1183	chr5	174714900	174715399	+	0	NA	Intergenic	Intergenic	156014	NM_000794	1812	Hs.2624	NM_000794	ENSG00000184845	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
38.3565	chr14	45457838	45458337	+	0	NA	intron (NM_015091, intron 1 of 18)	MLT1F1|LTR|ERVL-MaLR	26694	NM_015091	23116	Hs.371078	NM_015091	ENSG00000198718	FAM179B	KIAA0423	family with sequence similarity 179 member B	protein-coding
25.6225	chr11	117547146	117547645	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	120581	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
10.7831-2	chr5	157554462	157554961	+	0	NA	Intergenic	Intergenic	-268528	NM_001195556	9685	Hs.644000	NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
15.8838-2	chr2	22045312	22045811	+	0	NA	Intergenic	Intergenic	-112037	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
10.8884	chr1	34872665	34873164	+	0	NA	Intergenic	Intergenic	230361	NM_001134734	84970	Hs.194610	NM_032884	ENSG00000142698	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
15.4363-2	chr2	120577849	120578348	+	0	NA	intron (NM_002830, intron 2 of 26)	intron (NM_002830, intron 2 of 26)	60891	NM_002830	5775	Hs.469809	NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase, non-receptor type 4	protein-coding
24.2946	chr9	116693543	116694042	+	0	NA	intron (NM_001318040, intron 1 of 13)	intron (NM_001318040, intron 1 of 13)	55230	NM_133374	114991	Hs.349208	NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
26.1439	chr1	53106568	53107067	+	0	NA	intron (NR_135156, intron 2 of 5)	MER21C|LTR|ERVL	7801	NR_135157	348378	Hs.424589	NM_001042693	ENSG00000182183	FAM159A	PRO7171|WWLS2783	family with sequence similarity 159 member A	protein-coding
10.9205-4	chr2	23464583	23465082	+	0	NA	Intergenic	Intergenic	-143466	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
11.3549	chr7	131223428	131223927	+	0	NA	intron (NM_001018111, intron 1 of 8)	intron (NM_001018111, intron 1 of 8)	17699	NM_001018111	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
11.0624	chr2	68512060	68512559	+	0	NA	intron (NM_001111101, intron 2 of 2)	intron (NM_001111101, intron 2 of 2)	-32658	NM_000945	5534	Hs.280604	NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
16.0206	chr2	140250721	140251220	+	0	NA	Intergenic	Intergenic	596076	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
13.279-4	chr15	42259901	42260400	+	0	NA	intron (NM_139265, intron 1 of 5)	L3|LINE|CR1	4605	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
14.2481	chr18	4380611	4381110	+	0	NA	intron (NM_004746, intron 1 of 12)	intron (NM_004746, intron 1 of 12)	74406	NM_004746	9229	Hs.594640	NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
13.3442-2	chr6	149635572	149636071	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-3242	NM_001292034	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
14.3771-5	chr4	166161276	166161775	+	0	NA	intron (NM_007246, intron 4 of 14)	intron (NM_007246, intron 4 of 14)	30354	NM_001161522	11275	Hs.388668	NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
11.2901	chr22	40406050	40406549	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	15346	NM_138435	113828	Hs.197680	NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
17.8781-3	chr14	96698006	96698505	+	0	NA	intron (NM_000623, intron 1 of 2)	intron (NM_000623, intron 1 of 2)	-24292	NM_000710	623	Hs.525572	NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
13.8195-2	chr8	140255396	140255895	+	0	NA	Intergenic	Intergenic	-329396	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
12.4413	chr7	127480941	127481440	+	0	NA	intron (NM_014390, intron 11 of 23)	intron (NM_014390, intron 11 of 23)	-156372	NR_027330	27099	Hs.657377	NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
10.5799	chr11	68977746	68978245	+	0	NA	Intergenic	Intergenic	-38965	NR_104161	338694	Hs.564235	NR_104161	ENSG00000261070	LOC338694	-	uncharacterized LOC338694	ncRNA
16.925	chr2	17979457	17979956	+	0	NA	Intergenic	Intergenic	-18080	NM_001105569	343930	Hs.705359	NM_001105569	ENSG00000151379	MSGN1	MSOG|pMsgn1	mesogenin 1	protein-coding
26.3451	chr2	195231948	195232447	+	0	NA	intron (NR_110222, intron 1 of 5)	LTR14B|LTR|ERVK	23204	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
29.1721	chr9	100740962	100741461	+	0	NA	Intergenic	Intergenic	-4278	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
33.3255-2	chr13	79353742	79354241	+	0	NA	Intergenic	Intergenic	60194	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
13.6552-2	chr15	92972732	92973231	+	0	NA	intron (NM_001330416, intron 1 of 4)	intron (NM_001330416, intron 1 of 4)	35841	NM_006011	8128	Hs.302341	NM_006011	ENSG00000140557	ST8SIA2	HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
13.6856	chr1	109728590	109729089	+	0	NA	promoter-TSS (NM_001284353)	promoter-TSS (NM_001284353)	-332	NM_001284353	57535	Hs.708190	NM_020775	ENSG00000116299	KIAA1324	EIG121	KIAA1324	protein-coding
19.8297-5	chr22	21556334	21556833	+	0	NA	Intergenic	Intergenic	35391	NR_108107	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B (non-protein coding)	ncRNA
12.7984	chr12	123945842	123946341	+	0	NA	intron (NM_180699, intron 1 of 1)	intron (NM_180699, intron 1 of 1)	1840	NM_180699	11066	Hs.632738	NM_007020	ENSG00000184209	SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
89.431	chr5	45643030	45643529	+	0	NA	intron (NM_021072, intron 2 of 7)	intron (NM_021072, intron 2 of 7)	52941	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
17.5696	chr7	81720442	81720941	+	0	NA	intron (NM_000722, intron 6 of 38)	intron (NM_000722, intron 6 of 38)	82198	NR_110076	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA
28.3863-3	chr5	10519560	10520059	+	0	NA	intron (NR_134289, intron 1 of 2)	intron (NR_134289, intron 1 of 2)	2387	NR_134289	389273	Hs.519206	NR_134289	ENSG00000249160	LOC389273	-	uncharacterized LOC389273	ncRNA
10.4769-6	chr22	33040224	33040723	+	0	NA	intron (NM_001135774, intron 6 of 13)	intron (NM_001135774, intron 6 of 13)	-156329	NM_000362	7078	Hs.644633	NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
12.0971-3	chr16	14730397	14730896	+	0	NA	intron (NM_001330500, intron 1 of 5)	LTR5_Hs|LTR|ERVK	3978	NM_001330500	51283	Hs.435556	NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
16.4782	chrX	68340329	68340828	+	0	NA	Intergenic	Intergenic	44787	NM_001032396	64219	Hs.522679	NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
13.9794	chr15	30684912	30685411	+	0	NA	intron (NM_148911, intron 1 of 8)	CpG	703	NM_139320	89832	Hs.510853	NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10	CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion	protein-coding
25.9688	chr11	106492173	106492672	+	0	NA	Intergenic	Intergenic	370288	NR_120551	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
16.038-2	chr16	12730705	12731204	+	0	NA	Intergenic	Intergenic	-83224	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
35.1999	chr5	32426747	32427567	+	0	NA	intron (NR_144318, intron 2 of 18)	L1M3|LINE|L1	17710	NR_144318	51663	Hs.435231	NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
10.2826	chr3	134800752	134801251	+	0	NA	intron (NM_004441, intron 3 of 15)	intron (NM_004441, intron 3 of 15)	286902	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
17.3755-2	chr3	86589431	86589930	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	58587	NR_135563	101927494	Hs.385622	NR_135563	ENSG00000241328	LINC02070	-	long intergenic non-protein coding RNA 2070	ncRNA
11.9791	chr17	40670434	40670933	+	0	NA	intron (NM_001130020, intron 20 of 20)	intron (NM_001130020, intron 20 of 20)	4477	NR_049808	100847046		NR_049808	ENSG00000033627	MIR5010	mir-5010	microRNA 5010	ncRNA
46.6555	chr1	108496142	108497087	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-10451	NR_046653	100873946	Hs.568676	NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
22.1681	chr12	2045988	2046487	+	0	NA	promoter-TSS (NR_036546)	promoter-TSS (NR_036546)	-495	NR_036546	100271702	Hs.737031	NR_036546	ENSG00000235049	LINC00940	-	long intergenic non-protein coding RNA 940	ncRNA
18.0967-3	chr5	168203087	168203586	+	0	NA	intron (NM_003062, intron 12 of 35)	intron (NM_003062, intron 12 of 35)	-8076	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
57.2584	chr7	80627153	80627652	+	0	NA	Intergenic	L2a|LINE|L2	-78735	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
10.4769	chr2	215667584	215668083	+	0	NA	intron (NM_001282549, intron 1 of 4)	LTR5_Hs|LTR|ERVK	6602	NR_104212	580	Hs.591642	NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
18.3268	chr11	115592282	115592781	+	0	NA	Intergenic	Intergenic	12949	NR_135066	101928985	Hs.398155	NR_135066		LOC101928985	-	uncharacterized LOC101928985	ncRNA
59.3181	chr6	93597933	93598432	+	0	NA	Intergenic	Intergenic	531118	NM_001288629	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
13.439-2	chr3	165638807	165639306	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-83796	NR_137636	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
11.3077	chr12	70597045	70597544	+	0	NA	Intergenic	SVA_E|Other|Other	-39480	NM_014515	4848	Hs.133350	NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
14.0894	chr7	1188328	1188827	+	0	NA	Intergenic	AluJo|SINE|Alu	-10684	NM_001134396	84310	Hs.653258	NM_032350	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
24.2022	chr5	169190230	169190729	+	0	NA	intron (NM_004946, intron 25 of 51)	intron (NM_004946, intron 25 of 51)	126228	NM_004946	1794	Hs.586174	NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
10.6198-2	chr5	157673580	157674079	+	0	NA	Intergenic	Intergenic	162952	NR_109888	101927697	Hs.483960	NR_109888	ENSG00000276778	LOC101927697	-	uncharacterized LOC101927697	ncRNA
15.376	chr17	60827592	60828091	+	0	NA	intron (NM_001288779, intron 4 of 11)	intron (NM_001288779, intron 4 of 11)	56173	NM_001100875	162333	Hs.665663	NM_152598	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane associated ring-CH-type finger 10	protein-coding
14.1454	chrX	19631766	19632265	+	0	NA	intron (NM_001024666, intron 7 of 16)	intron (NM_001024666, intron 7 of 16)	57104	NM_001184960	30011	Hs.726365	NM_031892	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
20.4964-3	chr1	206577587	206578086	+	0	NA	intron (NM_001170637, intron 5 of 19)	intron (NM_001170637, intron 5 of 19)	20469	NR_120535	100996712	Hs.497575	NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
22.1753-3	chr3	172600943	172601442	+	0	NA	Intergenic	Intergenic	132717	NM_001258315	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
36.038	chr12	81085763	81086262	+	0	NA	Intergenic	Intergenic	-15396	NM_002469	4618	Hs.35937	NM_002469	ENSG00000111046	MYF6	CNM3|MRF4|bHLHc4|myf-6	myogenic factor 6	protein-coding
32.5885	chr8	123926275	123926774	+	0	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	128139	NM_001330601	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
12.6122-2	chr6	3518340	3518839	+	0	NA	Intergenic	Intergenic	-61796	NM_001286456	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
15.7675	chr8	133918256	133918755	+	0	NA	intron (NM_003235, intron 16 of 47)	intron (NM_003235, intron 16 of 47)	39300	NM_003235	7038	Hs.654591	NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
10.7572	chr5	148184808	148185307	+	0	NA	Intergenic	Intergenic	-21099	NM_000024	154	Hs.2551	NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
16.3827-2	chr13	50914586	50915085	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	168681	NR_002183	145165	Hs.511834	NM_153290		ST13P4	FAM10A4|FAM10A4P	suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4	pseudo
41.1126	chr5	27448146	27448645	+	0	NA	Intergenic	L1M2|LINE|L1	-24004	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
14.7625-3	chr20	57866737	57867236	+	0	NA	Intergenic	Intergenic	-8496	NM_207033	1908	Hs.1408	NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
11.463	chr7	36748304	36748803	+	0	NA	intron (NM_001637, intron 1 of 20)	intron (NM_001637, intron 1 of 20)	15601	NM_001177507	313	Hs.488007	NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
19.7881-3	chr9	130262618	130263117	+	0	NA	intron (NM_001005373, intron 24 of 25)	intron (NM_001005373, intron 24 of 25)	48333	NM_001005374	90678	Hs.495188	NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
21.0513-2	chr8	79524969	79525468	+	0	NA	Intergenic	Intergenic	-53064	NM_016010	51101	Hs.271876	NM_016010	ENSG00000104427	ZC2HC1A	C8orf70|CGI-62|FAM164A	zinc finger C2HC-type containing 1A	protein-coding
48.6012	chr5	3428009	3428508	+	0	NA	intron (NR_033898, intron 2 of 4)	intron (NR_033898, intron 2 of 4)	75860	NR_104618	102467075	Hs.652949	NR_104618	ENSG00000250716	LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA
87.5449	chr8	62065984	62066483	+	0	NA	Intergenic	Intergenic	-134292	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
17.0774-3	chr11	115857977	115858476	+	0	NA	Intergenic	Intergenic	-227308	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
10.6601	chr10	29935212	29935711	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-11560	NM_021738	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
10.9637	chr15	100520857	100521356	+	0	NA	intron (NM_139057, intron 20 of 21)	intron (NM_139057, intron 20 of 21)	173878	NR_135737	400464	Hs.187134	NM_001013670	ENSG00000259363	LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
10.0261	chr3	129360296	129360795	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-34963	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
49.8297-2	chr3	8638268	8638767	+	0	NA	Intergenic	Intergenic	25049	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312	long intergenic non-protein coding RNA 312	ncRNA
21.1238	chr6	155361251	155361750	+	0	NA	Intergenic	Intergenic	-49923	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
26.4975-6	chr14	75441164	75441663	+	0	NA	Intergenic	Intergenic	-18946	NM_001207012	5228	Hs.252820	NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
63.4679-2	chr7	108102032	108102531	+	0	NA	Intergenic	Intergenic	-5440	NM_001193583	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
23.9903	chr7	91744941	91745440	+	0	NA	intron (NM_000786, intron 9 of 9)	L3|LINE|CR1	18650	NM_000786	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
15.8838	chr20	30709000	30709499	+	0	NA	intron (NM_014742, intron 1 of 17)	SVA_D|Other|Other	11940	NM_014742	9777	Hs.654665	NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
15.0446-6	chr2	31619812	31620311	+	0	NA	intron (NM_000379, intron 6 of 35)	intron (NM_000379, intron 6 of 35)	17550	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
10.0789	chr4	139660821	139661320	+	0	NA	Intergenic	SVA_C|Other|Other	272730	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
10.2045	chr8	142741130	142741629	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	126295	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
16.0555	chr9	135069243	135069742	+	0	NA	intron (NM_032536, intron 2 of 7)	MLT1B|LTR|ERVL-MaLR	32158	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
14.1005	chr15	36896096	36896595	+	0	NA	intron (NM_001290232, intron 1 of 10)	intron (NM_001290232, intron 1 of 10)	9275	NM_032499	84529	Hs.48348	NM_032499	ENSG00000186073	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding
12.993-5	chr4	105433493	105433992	+	0	NA	intron (NR_125926, intron 1 of 9)	ERV3-16A3_I-int|LTR|ERVL	-17684	NR_132741	80319	Hs.12248	NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
25.8503	chr21	16930185	16930684	+	0	NA	Intergenic	LTR9|LTR|ERV1	-171910	NM_001283042	29761	Hs.743994	NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
16.5561-2	chr15	98644976	98645475	+	0	NA	Intergenic	Intergenic	-13243	NR_120325	101927332		NR_120325		LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
20.8513	chr7	9834350	9834849	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	160699	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
18.7615-2	chr6	101680788	101681287	+	0	NA	Intergenic	Intergenic	-165824	NM_001166247	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
39.2082-2	chr8	49835923	49836422	+	0	NA	Intergenic	CpG	-2173	NM_003068	6591	Hs.360174	NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
11.5552-2	chr1	92067745	92068244	+	0	NA	Intergenic	Intergenic	101329	NM_001134420	8317	Hs.533573	NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
25.1428	chr5	99723811	99724310	+	0	NA	promoter-TSS (NR_027503)	promoter-TSS (NR_027503)	-102	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase beta pseudogene	pseudo
11.9791-2	chr11	123543199	123543698	+	0	NA	Intergenic	Intergenic	-18133	NM_001040151	55800	Hs.4865	NM_018400	ENSG00000166257	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium voltage-gated channel beta subunit 3	protein-coding
14.4612	chrX	152780464	152780963	+	0	NA	Intergenic	Intergenic	-19730	NR_073156	55559	Hs.170835	NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
46.3827-4	chr9	103780694	103781193	+	0	NA	Intergenic	Intergenic	-10088	NM_207299	54886	Hs.382683	NM_017753	ENSG00000148123	PLPPR1	LPPR1|PRG-3	phospholipid phosphatase related 1	protein-coding
22.9843	chr6	149132596	149133095	+	0	NA	intron (NM_005715, intron 1 of 7)	MLT1H1|LTR|ERVL-MaLR	64574	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
17.167-4	chr5	141807478	141807977	+	0	NA	intron (NR_120664, intron 3 of 3)	LTR86A2|LTR|ERVL	102869	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	LOC101926941	-	uncharacterized LOC101926941	ncRNA
23.8934	chr5	154653597	154654096	+	0	NA	Intergenic	Intergenic	260531	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
14.7625-2	chr17	38752786	38753285	+	0	NA	Intergenic	Intergenic	-31299	NM_001301714	1236	Hs.370036	NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
14.7366-2	chr3	160549140	160549639	+	0	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	-10612	NM_001317912	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
20.7935	chr4	182068493	182068992	+	0	NA	intron (NR_033918, intron 2 of 2)	intron (NR_033918, intron 2 of 2)	11560	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
34.7108	chr16	49576149	49576648	+	0	NA	intron (NM_001330533, intron 3 of 5)	intron (NM_001330533, intron 3 of 5)	-23902	NR_144553	1596	Hs.684517	NR_144553		ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
13.4969-2	chr5	150416024	150416523	+	0	NA	intron (NM_001252385, intron 13 of 17)	intron (NM_001252385, intron 13 of 17)	16300	NM_001329790	2878	Hs.386793	NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
21.7587	chr15	31764246	31764745	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	145437	NM_015995	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
16.7778-2	chr12	12761315	12761814	+	0	NA	Intergenic	Intergenic	-3203	NM_001310	1389	Hs.591156	NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
24.2597-2	chr5	65618893	65619392	+	0	NA	Intergenic	Intergenic	178479	NM_139168	140890	Hs.49367	NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
21.5802	chr22	29446209	29446708	+	0	NA	exon (NM_001206998, exon 8 of 9)	exon (NM_001206998, exon 8 of 9)	11449	NM_015370	25770	Hs.50891	NM_015370	ENSG00000100249	C22orf31	HS747E2A|bK747E2.1	chromosome 22 open reading frame 31	protein-coding
12.0343	chr1	22534332	22534831	+	0	NA	Intergenic	Intergenic	-58151	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA
28.1816-3	chr7	24534086	24534585	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-78630	NM_016447	51678	Hs.533355	NM_016447	ENSG00000105926	MPP6	PALS2|VAM-1|VAM1|p55T	membrane palmitoylated protein 6	protein-coding
16.1439-3	chr3	137054205	137054704	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	377747	NM_144717	53833	Hs.61232	NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
27.4958-3	chr10	22311115	22311614	+	0	NA	Intergenic	L2|LINE|L2	-18714	NM_022365	64215	Hs.499000	NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
10.4769-4	chr22	32707431	32707930	+	0	NA	Intergenic	L2a|LINE|L2	-43192	NM_006604	10738	Hs.558455	NM_006604	ENSG00000128276	RFPL3	-	ret finger protein like 3	protein-coding
12.6122-3	chr20	15356400	15356899	+	0	NA	intron (NM_080676, intron 6 of 16)	intron (NM_080676, intron 6 of 16)	179145	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
28.7943	chr20	1814884	1815383	+	0	NA	Intergenic	MIRb|SINE|MIR	-54741	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
17.3993-4	chr8	135618067	135618566	+	0	NA	intron (NM_001029939, intron 6 of 16)	L2c|LINE|L2	8002	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
10.8991-2	chr14	77344171	77344670	+	0	NA	Intergenic	L2a|LINE|L2	51695	NM_194287	145497	Hs.147276	NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
13.8828	chr20	557710	558209	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	32951	NM_004609	6939	Hs.437	NM_004609	ENSG00000125878	TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15 (basic helix-loop-helix)	protein-coding
27.7989	chr1	109798253	109798752	+	0	NA	intron (NM_001408, intron 1 of 33)	intron (NM_001408, intron 1 of 33)	5861	NM_001408	1952	Hs.57652	NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
41.6115	chr8	137499454	137499953	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	926128	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
34.6218	chr7	127471334	127471833	+	0	NA	intron (NM_014390, intron 11 of 23)	intron (NM_014390, intron 11 of 23)	-165979	NR_027330	27099	Hs.657377	NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
15.157	chr13	90398722	90399221	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-182304	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	ncRNA
12.5414	chr4	125991863	125992362	+	0	NA	Intergenic	Intergenic	-245455	NM_024582	79633	Hs.563205	NM_024582	ENSG00000196159	FAT4	CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
21.8977	chr14	50810093	50810592	+	0	NA	intron (NM_004196, intron 3 of 8)	intron (NM_004196, intron 3 of 8)	31295	NM_001003803	27109	Hs.438489	NM_015684	ENSG00000125375	ATP5S	ATPW|FB|HSU79253	ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B)	protein-coding
21.3906	chr15	93012211	93012710	+	0	NA	TTS (NM_006011)	TTS (NM_006011)	2316	NR_126501	104613533	Hs.97584	NR_126501	ENSG00000259170	LOC104613533	-	uncharacterized LOC104613533	ncRNA
17.6195-2	chr14	30599925	30600424	+	0	NA	Intergenic	Intergenic	-203226	NM_001330069	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
29.431	chr12	107812620	107813119	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	98504	NM_001347944	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding
13.279-7	chr11	106157607	106158106	+	0	NA	Intergenic	Intergenic	35722	NR_120551	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
13.1336-4	chr3	5036487	5036986	+	0	NA	Intergenic	Intergenic	-15090	NR_125915	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
11.1351-2	chr19	23317574	23318073	+	0	NA	intron (NM_001277403, intron 2 of 3)	SVA_E|Other|Other	18046	NM_001277403	100129543	Hs.427120	NM_001277403	ENSG00000183850	ZNF730	-	zinc finger protein 730	protein-coding
11.5366	chr1	36089048	36089547	+	0	NA	intron (NM_001199779, intron 3 of 5)	intron (NM_001199779, intron 3 of 5)	7841	NM_001199780	5690	Hs.471441	NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome subunit beta 2	protein-coding
19.0309-2	chr18	33958100	33958599	+	0	NA	intron (NM_025135, intron 3 of 24)	intron (NM_025135, intron 3 of 24)	80690	NM_001281740	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
11.1634-4	chr12	110462366	110462865	+	0	NA	intron (NM_033121, intron 7 of 14)	Tigger14a|DNA|TcMar-Tigger	25380	NM_033121	88455	Hs.528703	NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
52.4185	chr1	165445891	165446390	+	0	NA	TTS (NR_026744)	TTS (NR_026744)	-31548	NR_033824	6258	Hs.26550	NM_006917	ENSG00000143171	RXRG	NR2B3|RXRC	retinoid X receptor gamma	protein-coding
23.0892-3	chr11	130498824	130499323	+	0	NA	Intergenic	Intergenic	-37557	NR_107019	102466873		NR_107019	ENSG00000274999	MIR8052	hsa-mir-8052	microRNA 8052	ncRNA
36.0033	chr7	31347490	31347989	+	0	NA	Intergenic	Intergenic	32799	NM_022728	63974	Hs.45152	NM_022728	ENSG00000164600	NEUROD6	Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2	neuronal differentiation 6	protein-coding
12.2841	chr17	75696645	75697144	+	0	NA	Intergenic	Intergenic	27747	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
22.1753-2	chr17	55641163	55641662	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-40454	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
16.073-2	chr19	5841304	5841803	+	0	NA	Intergenic	Intergenic	-1811	NM_001040701	2528	Hs.631846	NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
61.7134	chr7	37799090	37799589	+	0	NA	Intergenic	Intergenic	75961	NM_001329994	353345	Hs.563492	NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
12.2915	chr17_gl000204_random	7126	7625	+	0	NA	NA	Intergenic	NA	NA								
18.8606-2	chr7	151092781	151093280	+	0	NA	exon (NM_001284260, exon 3 of 6)	exon (NM_001284260, exon 3 of 6)	-13217	NR_034013	100131176	Hs.659231	NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
13.0103-2	chr15	75115556	75116055	+	0	NA	intron (NM_021819, intron 11 of 13)	intron (NM_021819, intron 11 of 13)	-3146	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII|Nbla11589	complexin 3	protein-coding
12.5964-2	chr7	49951456	49951955	+	0	NA	exon (NM_198570, exon 4 of 4)	exon (NM_198570, exon 4 of 4)	136776	NR_136188	375567	Hs.629302	NM_198570	ENSG00000188730	VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
28.4164	chr17	65611359	65611858	+	0	NA	intron (NM_181671, intron 5 of 9)	intron (NM_181671, intron 5 of 9)	-102341	NM_001303272	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
13.2239	chr12	2221488	2221987	+	0	NA	intron (NM_001129830, intron 1 of 47)	intron (NM_001129830, intron 1 of 47)	59286	NM_001129830	775	Hs.118262	NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS	calcium voltage-gated channel subunit alpha1 C	protein-coding
19.6257-5	chr3	24927839	24928338	+	0	NA	intron (NM_001290216, intron 2 of 10)	AluJb|SINE|Alu	57274	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
18.6967	chr8	134115027	134115526	+	0	NA	promoter-TSS (NM_001282964)	promoter-TSS (NM_001282964)	34	NM_001282965	6503	Hs.75367	NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
11.2378	chr11	89594288	89594787	+	0	NA	Intergenic	SVA_D|Other|Other	14648	NM_001164397	642446	Hs.730588	NM_001164397	ENSG00000189253	TRIM64B	-	tripartite motif containing 64B	protein-coding
29.7062-2	chr14	106319219	106319718	+	0	NA	Intergenic	Intergenic	4876	NR_039730	100616135		NR_039730	ENSG00000264024	MIR4507	-	microRNA 4507	ncRNA
11.2436	chr5	7627338	7627837	+	0	NA	intron (NM_020546, intron 4 of 24)	intron (NM_020546, intron 4 of 24)	224016	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
11.5243	chr6	138165659	138166158	+	0	NA	intron (NR_049793, intron 3 of 3)	LTR5_Hs|LTR|ERVK	-22417	NM_001270507	7128	Hs.211600	NM_006290	ENSG00000118503	TNFAIP3	A20|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
17.986-4	chr3	127469116	127469615	+	0	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	72360	NM_001256585	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
32.3284	chr1	53715100	53715599	+	0	NA	intron (NM_033300, intron 15 of 16)	L2c|LINE|L2	11067	NR_038953	100507564	Hs.592502	NR_038953	ENSG00000226754	LOC100507564	-	uncharacterized LOC100507564	ncRNA
33.4008	chr12	130947677	130948176	+	0	NA	intron (NM_015347, intron 3 of 18)	intron (NM_015347, intron 3 of 18)	54484	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
15.1004	chr17	62842206	62842705	+	0	NA	Intergenic	Intergenic	-9153	NR_024386	440456	Hs.646585	NR_024386		PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
29.2445	chr14	50464678	50465177	+	0	NA	TTS (NR_126500)	TTS (NR_126500)	-5075	NR_126499	283551	Hs.292580	NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
28.4771	chr9	97733606	97734105	+	0	NA	intron (NM_032823, intron 8 of 14)	intron (NM_032823, intron 8 of 14)	-93777	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
20.3058	chr3	71592419	71592918	+	0	NA	promoter-TSS (NM_001244816)	promoter-TSS (NM_001244816)	40	NM_001244816	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
17.5696-3	chr7	126198878	126199377	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	499111	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
28.2102-2	chr5	10583863	10584362	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	19677	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
25.6067	chrX	42323421	42323920	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	313816	NR_002191	80316	Hs.127689	NM_025210	ENSG00000102055	PPP1R2P9	I-4	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 9	pseudo
15.7675-4	chr7	39307966	39308465	+	0	NA	intron (NM_001166018, intron 5 of 10)	MER20B|DNA|hAT-Charlie	137730	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
18.4164	chr3	71081089	71081588	+	0	NA	intron (NM_032682, intron 11 of 20)	intron (NM_032682, intron 11 of 20)	32736	NM_001244813	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
20.716	chr4	39734254	39734753	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSz6|SINE|Alu	34839	NM_001312648	3093	Hs.50308	NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
18.9963	chr3	112962680	112963179	+	0	NA	intron (NM_001301861, intron 2 of 19)	MLT1J1|LTR|ERVL-MaLR	31585	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
12.4489-3	chr7	86873	87372	+	0	NA	Intergenic	Intergenic	62316	NR_134325	102723672	Hs.605204	NR_134325		LOC102723672	-	uncharacterized LOC102723672	ncRNA
16.8194-2	chr3	66859195	66859694	+	0	NA	Intergenic	Intergenic	-70684	NR_135533	105377143	Hs.553944	NR_135533		LOC105377143	-	uncharacterized LOC105377143	ncRNA
26.4975-5	chr6	159191088	159191587	+	0	NA	intron (NM_001111077, intron 10 of 13)	intron (NM_001111077, intron 10 of 13)	-5552	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
20.1637	chr6	101611390	101611889	+	0	NA	Intergenic	Intergenic	-235222	NM_001166247	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
17.167	chr9	136713567	136714066	+	0	NA	intron (NM_001134398, intron 3 of 29)	intron (NM_001134398, intron 3 of 29)	-108739	NM_007101	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
21.4026	chr10	84079271	84079770	+	0	NA	intron (NM_001165973, intron 2 of 10)	intron (NM_001165973, intron 2 of 10)	-86844	NR_120666	101929590	Hs.733268	NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA
18.2681-4	chr19	40925177	40925676	+	0	NA	Intergenic	Intergenic	-6155	NM_181882	57716	Hs.205457	NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
32.3508	chr5	158898814	158899313	+	0	NA	Intergenic	HAL1|LINE|L1	-5779	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
12.233-2	chr12	125551565	125552064	+	0	NA	intron (NM_023928, intron 1 of 17)	intron (NM_023928, intron 1 of 17)	1901	NM_023928	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
30.1412	chr3	160703790	160704289	+	0	NA	intron (NM_001317911, intron 2 of 3)	intron (NM_001317911, intron 2 of 3)	115653	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
23.0277	chr12	117771223	117771722	+	0	NA	intron (NM_001204218, intron 1 of 29)	intron (NM_001204218, intron 1 of 29)	-24257	NM_001204214	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
13.9147	chr3	188835234	188835733	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-54280	NM_198485	285386	Hs.729544	NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
25.6543	chr5	112987792	112988291	+	0	NA	Intergenic	LTR38C|LTR|ERV1	138682	NM_001345975	64848	Hs.231942	NM_022828	ENSG00000047188	YTHDC2	CAHL	YTH domain containing 2	protein-coding
21.1691-2	chr13	45300172	45300671	+	0	NA	Intergenic	Intergenic	83345	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
21.2321-2	chr16	49708188	49708687	+	0	NA	intron (NM_001271620, intron 3 of 7)	MIR|SINE|MIR	-10295	NM_001330533	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
20.5552	chr15	92602464	92602963	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	205183	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
11.1634	chr11	44283247	44283746	+	0	NA	3' UTR (NM_021926, exon 4 of 4)	3' UTR (NM_021926, exon 4 of 4)	48220	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
16.8403-2	chr20	24682167	24682666	+	0	NA	Intergenic	Intergenic	231974	NM_001323607	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
27.7989-2	chr3	138828067	138828566	+	0	NA	intron (NR_026783, intron 2 of 2)	intron (NR_026783, intron 2 of 2)	5289	NR_026783	60467	Hs.512673	NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)	ncRNA
15.8336	chr7	69971237	69971736	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-626037	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
14.8812-2	chr13	34519583	34520082	+	0	NA	intron (NM_181558, intron 8 of 8)	intron (NM_181558, intron 8 of 8)	127626	NM_002915	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
10.7469	chr22	18424111	18424610	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-34708	NM_001122731	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
15.6703	chr14	36458354	36458853	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-81030	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
24.5469-2	chr2	26963639	26964138	+	0	NA	Intergenic	Intergenic	-23254	NM_017877	54978	Hs.1594	NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
51.296	chr6	146368433	146368932	+	0	NA	intron (NM_001278067, intron 1 of 7)	UCON28a|Unknown|Unknown	18348	NM_001278066	2911	Hs.32945	NM_000838	ENSG00000152822	GRM1	GPRC1A|MGLU1|MGLUR1|PPP1R85|SCAR13	glutamate metabotropic receptor 1	protein-coding
11.1351-4	chr15	85732902	85733401	+	0	NA	Intergenic	Intergenic	15367	NR_049748	642423	Hs.681665	NR_049748		LOC642423	-	golgin A2 pseudogene	pseudo
76.6959	chr8	128289067	128289566	+	0	NA	intron (NR_117099, intron 1 of 3)	intron (NR_117099, intron 1 of 3)	32434	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLo-2|LINC01244	cancer susceptibility candidate 21 (non-protein coding)	ncRNA
13.279-3	chr14	57287830	57288329	+	0	NA	intron (NR_029385, intron 1 of 3)	UCON31|Unknown|Unknown	8178	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
12.5964	chr22	24639232	24639731	+	0	NA	intron (NM_004121, intron 1 of 11)	intron (NM_004121, intron 1 of 11)	1629	NM_004121	2687	Hs.437156	NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
28.8273-2	chr13	39675406	39675905	+	0	NA	Intergenic	Intergenic	63207	NM_001012754	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
20.6198	chr1	209721405	209721904	+	0	NA	Intergenic	Intergenic	-35391	NM_020439	57172	Hs.199068	NM_020439	ENSG00000008118	CAMK1G	CLICK3|CLICKIII|VWS1|dJ272L16.1	calcium/calmodulin dependent protein kinase IG	protein-coding
18.9279-2	chr1	54094784	54095283	+	0	NA	intron (NM_147193, intron 1 of 9)	intron (NM_147193, intron 1 of 9)	104844	NM_147193	148979	Hs.306691	NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
13.279-6	chr6	90007681	90008180	+	0	NA	intron (NM_002043, intron 2 of 8)	intron (NM_002043, intron 2 of 8)	17088	NM_002043	2570	Hs.379330	NM_002043	ENSG00000111886	GABRR2	-	gamma-aminobutyric acid type A receptor rho2 subunit	protein-coding
21.107	chr2	29970839	29971338	+	0	NA	intron (NM_004304, intron 1 of 28)	intron (NM_004304, intron 1 of 28)	173389	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
14.045	chr7	22826044	22826543	+	0	NA	Intergenic	Intergenic	36178	NM_019059	54543	Hs.112318	NM_019059	ENSG00000196683	TOMM7	TOM7	translocase of outer mitochondrial membrane 7	protein-coding
23.1336	chr3	587517	588016	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-46022	NR_110118	101927215	Hs.650700	NR_110118	ENSG00000224957	LINC01266	-	long intergenic non-protein coding RNA 1266	ncRNA
39.3181	chr5	56737292	56737791	+	0	NA	Intergenic	Intergenic	41095	NM_001017992	345651	Hs.482167	NM_001017992	ENSG00000169067	ACTBL2	ACT	actin, beta like 2	protein-coding
37.6195	chr7	105476777	105477276	+	0	NA	intron (NM_020725, intron 2 of 11)	intron (NM_020725, intron 2 of 11)	40005	NM_152749	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
16.3827-5	chr17	25823369	25823868	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	24582	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
28.1816-5	chr9	130063071	130063570	+	0	NA	intron (NM_032293, intron 2 of 27)	intron (NM_032293, intron 2 of 27)	36564	NM_032293	84253	Hs.29304	NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
19.9568	chr5	11878928	11879427	+	0	NA	intron (NR_109988, intron 1 of 21)	intron (NR_109988, intron 1 of 21)	24978	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
20.7366	chr4	179214679	179215178	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-385838	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
12.8567-2	chr3	139725857	139726356	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	72079	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
18.2391-5	chr16	48565151	48565650	+	0	NA	intron (NR_039970, intron 2 of 4)	intron (NR_039970, intron 2 of 4)	78720	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
18.0688-3	chr2	137660989	137661488	+	0	NA	intron (NM_001316349, intron 2 of 27)	intron (NM_001316349, intron 2 of 27)	138106	NM_001316349	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin type 1 domain containing 7B	protein-coding
16.1439-2	chr2	182506378	182506877	+	0	NA	intron (NM_001030311, intron 1 of 13)	MER3|DNA|hAT-Charlie	15207	NM_001030311	375298	Hs.732358	NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
20.6298	chr1	201346512	201347331	+	0	NA	promoter-TSS (NM_000364)	promoter-TSS (NM_000364)	-93	NM_001276347	7139	Hs.533613	NM_000364	ENSG00000118194	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T2, cardiac type	protein-coding
16.4589	chr5	15601865	15602364	+	0	NA	TTS (NR_109945)	TTS (NR_109945)	12997	NR_109945	101929472	Hs.662664	NR_109945		CTD-2350J17.1	-	uncharacterized LOC101929472	ncRNA
11.4569	chr11	113425223	113425722	+	0	NA	Intergenic	LTR9|LTR|ERV1	-79471	NM_016574	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
10.2503	chr9	108556900	108557399	+	0	NA	Intergenic	SATR1|Satellite|Satellite	100343	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
23.7469-2	chr3	16245135	16245634	+	0	NA	intron (NM_001319051, intron 3 of 9)	intron (NM_001319051, intron 3 of 9)	-12899	NM_001319052	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
15.7675-2	chr3	126184698	126185197	+	0	NA	intron (NM_001040653, intron 5 of 5)	intron (NM_001040653, intron 5 of 5)	9815	NR_104249	79364	Hs.440049	NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
31.2726	chr4	36694136	36694635	+	0	NA	Intergenic	Intergenic	-266335	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
11.6558-2	chr12	125683213	125683712	+	0	NA	Intergenic	Intergenic	-127700	NM_052907	114795	Hs.524838	NM_052907	ENSG00000139364	TMEM132B	-	transmembrane protein 132B	protein-coding
34.1908	chr5	8614384	8614883	+	0	NA	Intergenic	Intergenic	153595	NR_039663	100616142		NR_039663	ENSG00000247516	MIR4458	mir-4458	microRNA 4458	ncRNA
27.4958	chr16	1588748	1589247	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	5339	NM_024600	79652	Hs.459652	NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
17.4473	chr6	153493903	153494402	+	0	NA	Intergenic	Intergenic	-41763	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
28.9279	chr15	93796756	93797255	+	0	NA	Intergenic	Intergenic	-164562	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
26.4975-2	chr11	85894622	85895121	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-60555	NM_003797	8726	Hs.503510	NM_003797	ENSG00000074266	EED	HEED|WAIT1	embryonic ectoderm development	protein-coding
22.5104-2	chr10	49836146	49836645	+	0	NA	intron (NR_045675, intron 2 of 10)	MIRb|SINE|MIR	-23219	NR_144644	58504	Hs.655672	NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
22.2475	chr13	98856133	98856632	+	0	NA	intron (NM_005766, intron 1 of 26)	7SK|RNA|RNA	-4396	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
18.2681-2	chr20	3169881	3170380	+	0	NA	TTS (NM_023935)	TTS (NM_023935)	15213	NM_023935	65992	Hs.471975	NM_023935	ENSG00000198171	DDRGK1	C20orf116|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
21.6813	chr7	134208670	134209169	+	0	NA	Intergenic	AluJr|SINE|Alu	-3425	NM_020299	57016	Hs.116724	NM_020299	ENSG00000198074	AKR1B10	AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI	aldo-keto reductase family 1 member B10	protein-coding
23.2975	chr3	144870608	144871107	+	0	NA	Intergenic	Intergenic	1008425	NM_000935	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
12.7409-2	chr2	1594432	1594931	+	0	NA	Intergenic	Intergenic	153638	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
59.1009	chr8	62544271	62544770	+	0	NA	intron (NM_001164752, intron 13 of 13)	7SK|RNA|RNA	57888	NM_001164752	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
10.6148	chr3	5284031	5284530	+	0	NA	Intergenic	SVA_B|Other|Other	7660	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
23.7161	chr8	100836282	100836781	+	0	NA	intron (NM_152564, intron 51 of 61)	intron (NM_152564, intron 51 of 61)	69711	NM_004374	1345	Hs.351875	NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
10.4769-2	chr15	48136587	48137086	+	0	NA	intron (NR_120336, intron 2 of 4)	intron (NR_120336, intron 2 of 4)	1597	NR_120336	101928442	Hs.242804	NR_120336	ENSG00000259572	LINC01491	-	long intergenic non-protein coding RNA 1491	ncRNA
15.3611	chr16	84124916	84125415	+	0	NA	intron (NM_003791, intron 7 of 22)	intron (NM_003791, intron 7 of 22)	25383	NM_003791	8720	Hs.75890	NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
10.7988	chr7	29960014	29960513	+	0	NA	3' UTR (NM_001145513, exon 8 of 8)	3' UTR (NM_001145513, exon 8 of 8)	69162	NM_014766	9805	Hs.520740	NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
11.8177-2	chr2	223958004	223958503	+	0	NA	Intergenic	Intergenic	41605	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
17.8781-5	chr8	42318383	42318882	+	0	NA	intron (NM_006749, intron 4 of 10)	intron (NM_006749, intron 4 of 10)	40346	NM_001257180	6575	Hs.653173	NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
10.2228	chr9	122998157	122998656	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	8922	NR_029604	406939		NR_029604	ENSG00000207814	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
24.6597	chr20	41035335	41035834	+	0	NA	intron (NM_007050, intron 9 of 30)	MLT1K|LTR|ERVL-MaLR	-278539	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
18.0967-2	chr12	113454536	113455035	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	38511	NM_001032731	4939	Hs.414332	NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
20.0922	chr2	139621121	139621620	+	0	NA	Intergenic	7SK|RNA|RNA	-33524	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
13.5655	chr21	43491379	43491878	+	0	NA	intron (NM_001004416, intron 1 of 22)	intron (NM_001004416, intron 1 of 22)	202	NM_173568	89766	Hs.242520	NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
13.439	chr8	123692954	123693453	+	0	NA	intron (NR_126348, intron 2 of 3)	intron (NR_126348, intron 2 of 3)	13142	NR_126348	104266958	Hs.575540	NR_126348	ENSG00000253819	LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
20.2045-3	chr2	216563234	216563733	+	0	NA	intron (NR_037195, intron 5 of 9)	MLT1F|LTR|ERVL-MaLR	-19283	NR_132383	105373869	Hs.152812	NR_132383		LINC01614	LCAL4	long intergenic non-protein coding RNA 1614	ncRNA
16.1261	chr5	108682850	108683349	+	0	NA	intron (NM_014819, intron 7 of 9)	LTR41|LTR|ERVL	62576	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
14.6597	chr3	139228418	139228917	+	0	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	30004	NM_001130992	5947	Hs.529571	NM_002899	ENSG00000114115	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1	protein-coding
14.8017	chr12	2842678	2843177	+	0	NA	Intergenic	Intergenic	37908	NR_033958	283440	Hs.658536	NR_033958	ENSG00000255669	LOC283440	-	uncharacterized LOC283440	ncRNA
14.6852	chr2	213102011	213102510	+	0	NA	intron (NM_005235, intron 1 of 27)	L1PA7|LINE|L1	188824	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
10.1457	chr13	108295108	108295607	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-111761	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
18.3565	chr1	86968332	86968831	+	0	NA	Intergenic	Intergenic	34055	NM_001285	1179	Hs.194659	NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
28.6328	chr4	99665965	99666464	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-86402	NM_005723	10098	Hs.118118	NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
19.6658	chr16	79100329	79100828	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	534044	NM_001031804	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
23.1605	chr14	95120403	95120902	+	0	NA	Intergenic	MIRb|SINE|MIR	13590	NR_015340	388007	Hs.527795	NR_015340	ENSG00000187483	SERPINA13P	SERPINA13|UNQ6121	serpin family A member 13, pseudogene	pseudo
28.1816-4	chr6	22099406	22099905	+	0	NA	intron (NR_015410, intron 8 of 11)	intron (NR_015410, intron 8 of 11)	47767	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
13.8195	chr12	131174193	131174692	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	149377	NM_001980	2054	Hs.437585	NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19.4692-5	chr9	119940816	119941315	+	0	NA	intron (NM_014010, intron 3 of 21)	intron (NM_014010, intron 3 of 21)	2415	NR_003708	100124538	Hs.693445	NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
13.2057-2	chr2	106697341	106697840	+	0	NA	Intergenic	L1MEe|LINE|L1	15477	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
37.7989-2	chrX	107468207	107468706	+	0	NA	intron (NM_001847, intron 3 of 44)	intron (NM_001847, intron 3 of 44)	133559	NM_001321287	115201	Hs.8763	NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2	autophagy related 4A cysteine peptidase	protein-coding
19.3181	chr2	55126647	55127247	+	0	NA	intron (NM_001039753, intron 21 of 40)	intron (NM_001039753, intron 21 of 40)	110523	NM_007008	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
17.4715	chr12	43492115	43492614	+	0	NA	Intergenic	Intergenic	406346	NR_135028	105369739	Hs.126660	NR_135028	ENSG00000257114	LOC105369739	-	uncharacterized LOC105369739	ncRNA
11.0347	chr13	104024824	104025323	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-52477	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
49.8297-4	chr5	126015754	126016253	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	48589	NM_207408	389320	Hs.177983	NM_207408	ENSG00000196900	TEX43	C5orf48|Tseg7	testis expressed 43	protein-coding
22.0482	chr1	208489605	208490104	+	0	NA	Intergenic	Intergenic	-72189	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
16.8613	chr20	46476571	46477070	+	0	NA	Intergenic	Intergenic	-61460	NM_001161841	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
30.7109	chr6	150589001	150589500	+	0	NA	Intergenic	Intergenic	-100778	NM_203395	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
11.4935	chr5	53452397	53452896	+	0	NA	intron (NM_019087, intron 2 of 4)	intron (NM_019087, intron 2 of 4)	-81233	NR_039664	100616233		NR_039664	ENSG00000265421	MIR4459	-	microRNA 4459	ncRNA
12.84-3	chr8	5086393	5086892	+	0	NA	Intergenic	Intergenic	-234314	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
10.4769-3	chr13	27437947	27438446	+	0	NA	Intergenic	Intergenic	-103274	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
10.9205	chr14	106045424	106045923	+	0	NA	Intergenic	Intergenic	-41780	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
10.7624	chr4	72096656	72097155	+	0	NA	intron (NM_001134742, intron 1 of 24)	intron (NM_001134742, intron 1 of 24)	43902	NM_001098484	8671	Hs.5462	NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
17.0774-5	chr8	80873644	80874143	+	0	NA	intron (NM_014018, intron 2 of 2)	intron (NM_014018, intron 2 of 2)	68613	NM_014018	28957	Hs.521124	NM_014018	ENSG00000147586	MRPS28	HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
22.4489-2	chr12	108787633	108788132	+	0	NA	Intergenic	Intergenic	-54788	NM_001142343	1240	Hs.197143	NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemerin chemokine-like receptor 1	protein-coding
27.167-2	chr9	17609415	17609914	+	0	NA	intron (NM_003026, intron 1 of 8)	intron (NM_003026, intron 1 of 8)	30712	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
17.0553-2	chr6	159859113	159859612	+	0	NA	Intergenic	Intergenic	54799	NR_125873	102724053	Hs.98463	NR_125873	ENSG00000234777	LOC102724053	-	uncharacterized LOC102724053	ncRNA
17.8516-3	chr12	110400213	110400712	+	0	NA	intron (NM_001135213, intron 10 of 18)	intron (NM_001135213, intron 10 of 18)	33732	NM_057170	9815	Hs.434996	NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
16.6959-2	chr1	65641251	65641750	+	0	NA	intron (NM_001330616, intron 1 of 4)	intron (NM_001330616, intron 1 of 4)	26814	NM_001330616	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
15.0724-3	chr5	101643464	101643963	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-11460	NM_180991	353189	Hs.127648	NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
12.2988-3	chr2	38055116	38055615	+	0	NA	intron (NR_110012, intron 3 of 3)	intron (NR_110012, intron 3 of 3)	1489	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
12.1968	chr6	106993800	106994299	+	0	NA	intron (NM_001624, intron 11 of 19)	MLT1K|LTR|ERVL-MaLR	34319	NM_001624	202	Hs.724262	NM_001624	ENSG00000112297	AIM1	CRYBG1|ST4	absent in melanoma 1	protein-coding
11.1634-3	chr1	12011899	12012398	+	0	NA	intron (NM_000302, intron 4 of 18)	intron (NM_000302, intron 4 of 18)	17424	NM_000302	5351	Hs.75093	NM_000302	ENSG00000083444	PLOD1	EDS6|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
14.3771-7	chr1	48347417	48347916	+	0	NA	intron (NM_001194986, intron 2 of 6)	intron (NM_001194986, intron 2 of 6)	114896	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
15.5129	chr8	122586558	122587057	+	0	NA	Intergenic	L3|LINE|CR1	-64779	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
13.0103	chr17	25821156	25821655	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	22369	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
11.0073	chr3	45624344	45624843	+	0	NA	Intergenic	Intergenic	-11730	NM_014240	8994	Hs.193370	NM_014240	ENSG00000144791	LIMD1	-	LIM domains containing 1	protein-coding
10.9205-2	chr18	29923546	29924045	+	0	NA	intron (NM_022751, intron 2 of 5)	intron (NM_022751, intron 2 of 5)	126652	NM_001242409	64762	Hs.444314	NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding
24.2597	chr15	99289894	99290393	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-37512	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
12.0066-2	chr14	76407287	76407786	+	0	NA	intron (NM_015072, intron 31 of 31)	intron (NM_015072, intron 31 of 31)	40829	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
42.4109	chr3	194967264	194967763	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	1136	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
16.5365	chr11	125245891	125246390	+	0	NA	intron (NM_022062, intron 5 of 12)	intron (NM_022062, intron 5 of 12)	-118970	NM_001301851	403312	Hs.450611	NM_203452		LOC403312	-	putative uncharacterized protein MGC39545	protein-coding
11.1634-5	chr5	111035711	111036210	+	0	NA	intron (NR_040093, intron 2 of 6)	intron (NR_040093, intron 2 of 6)	55988	NM_001142483	9315	Hs.36053	NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
11.3312	chr9	101068939	101069438	+	0	NA	intron (NM_005458, intron 14 of 18)	MLT1J|LTR|ERVL-MaLR	-51185	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
16.0033	chr2	439008	439507	+	0	NA	Intergenic	Intergenic	-118944	NR_136169	105373352		NR_136168		LOC105373352	-	uncharacterized LOC105373352	ncRNA
16.5956-2	chr7	92173727	92174226	+	0	NA	Intergenic	SVA_B|Other|Other	15889	NM_032120	84060	Hs.21590	NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304|MGC16142	RNA binding motif protein 48	protein-coding
18.8606	chr14	76436138	76436637	+	0	NA	intron (NM_001329939, intron 4 of 7)	L2b|LINE|L2	11978	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
12.3582	chr3	197457866	197458365	+	0	NA	intron (NM_001145642, intron 1 of 20)	SVA_D|Other|Other	5682	NM_001346873	9711	Hs.478868	NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	RUN and cysteine rich domain containing beclin 1 interacting protein	protein-coding
14.6218	chr11	44979319	44979818	+	0	NA	Intergenic	Intergenic	-6711	NM_001318385	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
14.2251-2	chr7	70884423	70884922	+	0	NA	intron (NM_022479, intron 4 of 10)	intron (NM_022479, intron 4 of 10)	-111916	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	ncRNA
15.0585	chr2	234583438	234583937	+	0	NA	intron (NM_021027, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	3143	NM_021027	54600	Hs.554822	NM_021027	ENSG00000241119	UGT1A9	HLUGP4|LUGP4|UDPGT|UDPGT 1-9|UGT-1I|UGT1-09|UGT1-9|UGT1.9|UGT1A9S|UGT1AI|UGT1I	UDP glucuronosyltransferase family 1 member A9	protein-coding
18.5699-2	chr5	131594773	131595272	+	0	NA	intron (NM_003687, intron 1 of 6)	intron (NM_003687, intron 1 of 6)	1671	NM_001131027	8572	Hs.424312	NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
18.8273-2	chr9	120992556	120993055	+	0	NA	Intergenic	Intergenic	526352	NM_138557	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
30.2182-3	chr9	129783937	129784436	+	0	NA	intron (NM_001190728, intron 3 of 16)	intron (NM_001190728, intron 3 of 16)	59682	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
19.0658	chr2	42173057	42173556	+	0	NA	intron (NM_001242815, intron 3 of 3)	L2c|LINE|L2	7637	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
15.6384-3	chr21	33824621	33825120	+	0	NA	intron (NM_001320744, intron 1 of 5)	LTR1|LTR|ERV1	40125	NM_001286556	59271	Hs.208358	NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
23.6754	chr1	93794295	93794794	+	0	NA	intron (NR_034089, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	16824	NR_034089	100131564	Hs.732666	NR_034089		CCDC18-AS1	-	CCDC18 antisense RNA 1	ncRNA
23.7366	chr7	141787682	141788181	+	0	NA	intron (NM_004668, intron 38 of 47)	intron (NM_004668, intron 38 of 47)	-23618	NM_001293626	93432	Hs.647098	NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding
14.3771-3	chr1	99744982	99745481	+	0	NA	intron (NM_001166252, intron 1 of 5)	intron (NM_001166252, intron 1 of 5)	15383	NM_001166252	9890	Hs.13245	NM_014839	ENSG00000117600	PLPPR4	LPPR4|LPR4|PHP1|PRG-1|PRG1	phospholipid phosphatase related 4	protein-coding
11.8376	chr9	118971209	118971708	+	0	NA	intron (NM_002581, intron 3 of 21)	intron (NM_002581, intron 3 of 21)	55387	NM_002581	5069	Hs.643599	NM_002581	ENSG00000182752	PAPPA	ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1	pappalysin 1	protein-coding
10.9745	chr13	27293602	27294101	+	0	NA	Intergenic	Intergenic	41071	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
31.8842	chr20	23901456	23901955	+	0	NA	Intergenic	Intergenic	-41325	NM_001900	1473	Hs.121489	NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
19.914-3	chr11	63913629	63914128	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	19707	NM_014067	28992	Hs.602898	NM_014067	ENSG00000133315	MACROD1	LRP16	MACRO domain containing 1	protein-coding
24.9214	chr7	114978767	114979266	+	0	NA	Intergenic	Intergenic	-107607	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
25.1856-2	chr8	33086534	33087033	+	0	NA	Intergenic	LTR79|LTR|ERVL	243881	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
24.9485	chr17	21356738	21357237	+	0	NA	Intergenic	MER90a|LTR|ERV1	48539	NM_001194958	100134444	Hs.200629	NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium voltage-gated channel subfamily J member 18	protein-coding
14.1567	chr3	72817997	72818496	+	0	NA	intron (NM_018130, intron 10 of 10)	MER102a|DNA|hAT-Charlie	79352	NM_018130	55164	Hs.606584	NM_018130	ENSG00000144736	SHQ1	GRIM-1|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
36.7366	chr9	111144507	111145006	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	473519	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
14.7625	chr9	70601421	70601920	+	0	NA	Intergenic	L1PA13|LINE|L1	-111459	NR_104600	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding
63.4679	chr7	124918537	124919036	+	0	NA	intron (NR_110188, intron 3 of 8)	MLT1D|LTR|ERVL-MaLR	-14441	NR_110182	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
60.4624-3	chr14	21072065	21072947	+	0	NA	intron (NR_122043, intron 4 of 4)	HERVL18-int|LTR|ERVL	-13524	NM_001024822	493901	Hs.729466	NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
18.729-2	chr17	55859455	55859954	+	0	NA	Intergenic	Intergenic	-37014	NM_001282544	101927581	Hs.540784	NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
12.1968-4	chr1	88816250	88816749	+	0	NA	Intergenic	Intergenic	-333328	NM_001320708	5586	Hs.440833	NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
33.1515	chr6	159630826	159631325	+	0	NA	intron (NM_032532, intron 4 of 22)	intron (NM_032532, intron 4 of 22)	-40036	NR_121668	101929122	Hs.134215	NR_121668		LOC101929122	-	uncharacterized LOC101929122	ncRNA
28.1816	chr4	100244777	100245276	+	0	NA	Intergenic	Intergenic	-2427	NM_000668	125	Hs.4	NM_000668	ENSG00000196616	ADH1B	ADH2|HEL-S-117	alcohol dehydrogenase 1B (class I), beta polypeptide	protein-coding
28.8606	chr1	201398669	201399168	+	0	NA	Intergenic	Intergenic	-8044	NM_003281	7135	Hs.320890	NM_003281	ENSG00000159173	TNNI1	SSTNI|TNN1	troponin I1, slow skeletal type	protein-coding
36.0033-2	chr2	177896121	177896620	+	0	NA	Intergenic	Intergenic	-181052	NM_001330251	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
10.5601	chr14	36325211	36325710	+	0	NA	intron (NM_032352, intron 4 of 9)	intron (NM_032352, intron 4 of 9)	29863	NM_032352	84312	Hs.525299	NM_032352	ENSG00000100916	BRMS1L	BRMS1	breast cancer metastasis-suppressor 1-like	protein-coding
11.1351-3	chr6	140101516	140102015	+	0	NA	intron (NR_038399, intron 1 of 2)	intron (NR_038399, intron 1 of 2)	9555	NR_038399	100132735	Hs.62646	NR_038399		LOC100132735	-	uncharacterized LOC100132735	ncRNA
17.122-6	chr8	103934106	103934605	+	0	NA	intron (NR_126339, intron 2 of 2)	intron (NR_126339, intron 2 of 2)	57856	NR_126339	100506753	Hs.602901	NR_126338		AZIN1-AS1	-	AZIN1 antisense RNA 1	ncRNA
41.7849	chr14	51965115	51966050	+	0	NA	intron (NM_001042481, intron 1 of 14)	MIRb|SINE|MIR	9743	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
13.5458	chr17	56381196	56381998	+	0	NA	intron (NM_001261835, intron 31 of 31)	intron (NM_001261835, intron 31 of 31)	-21214	NR_038410	100506779	Hs.718477	NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1 antisense RNA 1	ncRNA
15.4516	chrX	10278456	10278955	+	0	NA	Intergenic	Intergenic	153720	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
24.5469-3	chr3	193782703	193783202	+	0	NA	intron (NR_136181, intron 1 of 3)	MER94B|DNA|hAT-Blackjack	4366	NR_136181	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
36.6154-2	chr7	15085739	15086238	+	0	NA	Intergenic	Intergenic	-204913	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
17.8516-5	chr11	97227128	97227627	+	0	NA	Intergenic	Intergenic	985788	NR_135097	105369443	Hs.599377	NR_135097	ENSG00000256684	LOC105369443	-	uncharacterized LOC105369443	ncRNA
19.4692-4	chr1	177826306	177826805	+	0	NA	Intergenic	Intergenic	112495	NM_033127	89866	Hs.149540	NM_033127	ENSG00000120341	SEC16B	LZTR2|PGPR-p117|RGPR|SEC16S	SEC16 homolog B, endoplasmic reticulum export factor	protein-coding
14.7496	chr16	74848807	74849306	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-40327	NM_024306	79152	Hs.461329	NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
35.376-2	chr3	119357607	119358106	+	0	NA	Intergenic	Intergenic	21581	NM_022135	64091	Hs.534383	NM_022135	ENSG00000121577	POPDC2	POP2	popeye domain containing 2	protein-coding
40.2273	chr12	103728225	103728724	+	0	NA	intron (NM_001099336, intron 4 of 5)	intron (NM_001099336, intron 4 of 5)	161314	NR_103526	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
20.4721	chr6	160216189	160216688	+	0	NA	intron (NR_134861, intron 2 of 3)	LTR5_Hs|LTR|ERVK	-4843	NM_001271862	154197	Hs.349077	NM_173516	ENSG00000146453	PNLDC1	-	PARN like, ribonuclease domain containing 1	protein-coding
17.5945	chr21	47609016	47609515	+	0	NA	3' UTR (NM_001145436, exon 22 of 22)	3' UTR (NM_001145436, exon 22 of 22)	-4892	NM_032261	84221	Hs.381214	NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1-like	protein-coding
23.2422	chr2	169401116	169401615	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	-38088	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
12.9243	chr2	212766088	212766587	+	0	NA	intron (NM_005235, intron 3 of 27)	intron (NM_005235, intron 3 of 27)	524747	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
23.536	chr6	152614429	152614928	+	0	NA	intron (NM_182961, intron 95 of 145)	intron (NM_182961, intron 95 of 145)	-86987	NR_120501	100505475	Hs.571203	NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
17.9048-4	chr4	163036412	163036911	+	0	NA	intron (NM_020116, intron 1 of 15)	UCON24|Unknown|Unknown	48525	NM_020116	56884	Hs.32452	NM_020116	ENSG00000168843	FSTL5	-	follistatin like 5	protein-coding
10.4239	chr12	75510357	75510856	+	0	NA	intron (NM_001260497, intron 2 of 4)	intron (NM_001260497, intron 2 of 4)	92922	NM_139137	3747	Hs.27214	NM_139136	ENSG00000166006	KCNC2	KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
10.2872	chr5	38433394	38433893	+	0	NA	intron (NM_152403, intron 15 of 21)	intron (NM_152403, intron 15 of 21)	-11935	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
12.8567	chr16	68484709	68485208	+	0	NA	Intergenic	Intergenic	-2549	NM_018667	55512	Hs.368421	NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
19.9568-4	chr3	128036510	128037009	+	0	NA	intron (NM_021937, intron 4 of 6)	L2b|LINE|L2	-145678	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
23.4199	chr12	31379525	31380414	+	0	NA	Intergenic	Intergenic	-97281	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
17.5696-2	chr9	4009051	4009550	+	0	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	110654	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
14.4129	chr11	97574857	97575356	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-1316600	NM_001243271	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
20.5948	chr20	24699583	24700082	+	0	NA	Intergenic	Intergenic	-230034	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
15.1004-2	chr3	128456319	128456818	+	0	NA	intron (NM_004637, intron 1 of 5)	AluJb|SINE|Alu	11589	NM_004637	7879	Hs.684374	NM_004637	ENSG00000075785	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
43.3913	chr7	137630695	137631194	+	0	NA	intron (NM_194071, intron 1 of 11)	MLT1E1|LTR|ERVL-MaLR	-7150	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
31.0018	chr3	157260872	157261371	+	0	NA	promoter-TSS (NM_001099777)	promoter-TSS (NM_001099777)	-12	NM_001130001	152078	Hs.259046	NM_001099777	ENSG00000174899	PQLC2L	C3orf55	PQ loop repeat containing 2 like	protein-coding
12.7246	chr17	70283687	70284186	+	0	NA	Intergenic	Intergenic	-55016	NR_135222	146795	Hs.651743	NR_135222	ENSG00000264026	LINC02003	-	long intergenic non-protein coding RNA 2003	ncRNA
16.1439	chr2	47229362	47229861	+	0	NA	intron (NM_020458, intron 8 of 19)	intron (NM_020458, intron 8 of 19)	-60617	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
25.5752-2	chr11	45533109	45533608	+	0	NA	Intergenic	Intergenic	140410	NR_122071	399886	Hs.559970	NR_122071	ENSG00000255267	LOC399886	-	uncharacterized LOC399886	ncRNA
26.5758	chr21	9930153	9930652	+	0	NA	intron (NR_038329, intron 2 of 2)	L1P4|LINE|L1	38192	NR_038329	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
15.4821-2	chr3	139405903	139406402	+	0	NA	Intergenic	Intergenic	-9260	NM_001320512	349565	Hs.208673	NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
10.2641	chr8	142168056	142168555	+	0	NA	intron (NM_014957, intron 8 of 22)	intron (NM_014957, intron 8 of 22)	29585	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
17.4232-2	chr2	122662026	122662525	+	0	NA	Intergenic	Intergenic	149154	NM_001261401	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
12.4718-3	chr1	202513871	202514370	+	0	NA	intron (NM_001197131, intron 1 of 6)	intron (NM_001197131, intron 1 of 6)	4878	NM_001197131	4660	Hs.444403	NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
82.4949	chr14	23466332	23466831	+	0	NA	intron (NM_021944, intron 2 of 6)	intron (NM_021944, intron 2 of 6)	3665	NM_001282969	60686	Hs.255874	NM_021944	ENSG00000100802	C14orf93	-	chromosome 14 open reading frame 93	protein-coding
14.7756-2	chr5	73722243	73722742	+	0	NA	intron (NR_126354, intron 2 of 2)	intron (NR_126354, intron 2 of 2)	104181	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
20.0349	chr17	25831467	25831966	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	32680	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
27.3518	chr5	159003909	159004408	+	0	NA	Intergenic	Intergenic	-110874	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
11.2552-2	chr21	45563172	45563671	+	0	NA	intron (NR_135220, intron 5 of 5)	intron (NR_135220, intron 5 of 5)	9927	NM_001320384	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
21.9518	chr2	122903043	122903542	+	0	NA	Intergenic	Intergenic	390171	NM_001261401	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
17.4232	chr2	42981407	42981906	+	0	NA	3' UTR (NM_001282756, exon 17 of 17)	3' UTR (NM_001282756, exon 17 of 17)	9745	NM_148962	165140	Hs.168439	NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
13.6552-3	chr8	140254850	140255349	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-328850	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
40.4672	chr3	25519687	25520186	+	0	NA	intron (NM_001290217, intron 2 of 7)	MamRep137|DNA|TcMar?	20135	NM_001290217	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
24.034	chr17	70948758	70949257	+	0	NA	intron (NM_001159770, intron 4 of 9)	intron (NM_001159770, intron 4 of 9)	139846	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding
22.6281	chr3	194974947	194975446	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-6547	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
20.2045-2	chr11	20325110	20325609	+	0	NA	Intergenic	Intergenic	-59872	NM_006410	10553	Hs.90753	NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
10.1278	chr4	23373647	23374146	+	0	NA	Intergenic	SVA_E|Other|Other	509019	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
28.2102-3	chr7	66927787	66928286	+	0	NA	Intergenic	Intergenic	127073	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
56.2525	chr5	32299384	32299883	+	0	NA	intron (NM_001040446, intron 1 of 15)	intron (NM_001040446, intron 1 of 15)	13481	NM_001294344	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
17.5696-4	chr3	8597275	8597774	+	0	NA	intron (NM_001278234, intron 3 of 4)	MER58A|DNA|hAT-Charlie	-15944	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312	long intergenic non-protein coding RNA 312	ncRNA
21.4388	chr12	54332100	54332599	+	0	NA	promoter-TSS (NM_017410)	promoter-TSS (NM_017410)	-227	NM_017410	3229	Hs.118608	NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
17.8781-2	chrX	11170205	11170704	+	0	NA	intron (NR_109776, intron 11 of 14)	intron (NR_109776, intron 11 of 14)	41048	NM_005333	3052	Hs.211571	NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
22.3958-2	chr8	137706825	137707324	+	0	NA	Intergenic	LTR1|LTR|ERV1	718757	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
11.9586	chr2	84528680	84529179	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	11123	NR_003663	388965	Hs.664098	NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
17.9588-5	chr3	194815922	194816421	+	0	NA	intron (NR_104188, intron 2 of 3)	intron (NR_104188, intron 2 of 3)	854	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
32.9328	chr14	93566926	93567425	+	0	NA	intron (NM_001142593, intron 2 of 10)	intron (NM_001142593, intron 2 of 10)	15089	NM_001142593	3705	Hs.308122	NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
14.8812	chr8	126969907	126970406	+	0	NA	Intergenic	L2|LINE|L2	-6715	NR_038446	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
20.1547	chr1	241610458	241610957	+	0	NA	Intergenic	Intergenic	72378	NM_000143	2271	Hs.592490	NM_000143	ENSG00000091483	FH	FMRD|HLRCC|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
26.1798	chr21	27764894	27765393	+	0	NA	promoter-TSS (NR_135516)	promoter-TSS (NR_135516)	-811	NR_135516	100996571	Hs.570432	NR_135515	ENSG00000197934	CYYR1-AS1	-	cysteine and tyrosine rich 1 antisense RNA 1	ncRNA
60.4624	chr3	974928	975427	+	0	NA	Intergenic	Intergenic	-159165	NM_001289081	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
32.9328-2	chr14	96231346	96231845	+	0	NA	Intergenic	Intergenic	-51062	NM_001098725	8115	Hs.2484	NM_021966	ENSG00000100721	TCL1A	TCL1	T-cell leukemia/lymphoma 1A	protein-coding
10.7469-2	chr10	46009713	46010212	+	0	NA	intron (NM_001002266, intron 2 of 6)	intron (NM_001002266, intron 2 of 6)	20880	NM_001002266	220972	Hs.499489	NM_145021	ENSG00000165406	MARCH8	CMIR|MARCH-VIII|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
12.0135-4	chr9	92206252	92206751	+	0	NA	Intergenic	Intergenic	-13426	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
10.2319-3	chr8	36945443	36945942	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-33779	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
11.8842	chr20	56468352	56468851	+	0	NA	Intergenic	Intergenic	-1849	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	mir-4532	microRNA 4532	ncRNA
15.9688-5	chrX	16985940	16986439	+	0	NA	intron (NM_001080975, intron 1 of 17)	SVA_D|Other|Other	21375	NM_001080975	9185	Hs.186810	NM_004726	ENSG00000169891	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
26.4975	chr7	116936512	116937011	+	0	NA	intron (NR_024047, intron 4 of 4)	intron (NR_024047, intron 4 of 4)	26582	NM_003391	7472	Hs.567356	NM_003391	ENSG00000105989	WNT2	INT1L1|IRP	Wnt family member 2	protein-coding
54.1908	chr12	7526987	7527486	+	0	NA	exon (NM_174941, exon 13 of 20)	exon (NM_174941, exon 13 of 20)	69545	NM_001297650	283316	Hs.631727	NM_174941	ENSG00000177675	CD163L1	CD163B|M160|SCARI2	CD163 molecule like 1	protein-coding
23.6351	chr5	7565576	7566075	+	0	NA	intron (NM_020546, intron 3 of 24)	intron (NM_020546, intron 3 of 24)	169482	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
15.6225-2	chr8	63414247	63414746	+	0	NA	intron (NR_130764, intron 1 of 6)	intron (NR_130764, intron 1 of 6)	252995	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding
12.0135-2	chr20	24138973	24139472	+	0	NA	Intergenic	Intergenic	-41181	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
23.7469-3	chr9	115527021	115527520	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	14136	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
10.1278-3	chr10	62885505	62886004	+	0	NA	Intergenic	Intergenic	109721	NR_108052	100507058	Hs.145227	NR_108052	ENSG00000227244	LINC00845	-	long intergenic non-protein coding RNA 845	ncRNA
15.3165	chr1	220537116	220537615	+	0	NA	Intergenic	Intergenic	-91522	NM_012414	25782	Hs.654849	NM_012414	ENSG00000118873	RAB3GAP2	RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
10.4769-5	chr5	118659169	118659668	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-9452	NM_001286814	25816	Hs.618488	NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
15.544	chr13	74719315	74719814	+	0	NA	Intergenic	Intergenic	-11498	NM_007249	11278	Hs.373857	NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	Kruppel like factor 12	protein-coding
32.1968	chr1	86969334	86969833	+	0	NA	Intergenic	Intergenic	35057	NM_001285	1179	Hs.194659	NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
17.2125	chr9	129845115	129845614	+	0	NA	intron (NM_001190728, intron 7 of 16)	intron (NM_001190728, intron 7 of 16)	39680	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
16.1979-2	chrX	40605654	40606153	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-11099	NM_004229	9282	Hs.407604	NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
20.2045	chr20	52972143	52972642	+	0	NA	Intergenic	L2c|LINE|L2	-119619	NM_001294161	55816	Hs.473133	NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
17.986-2	chr13	25299297	25299796	+	0	NA	Intergenic	Intergenic	-38755	NM_031277	56163	Hs.97464	NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
17.9588-4	chrX	152682181	152682680	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-1351	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
15.0446	chr1	115856607	115857106	+	0	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	24001	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
16.3451	chr1	3493722	3494221	+	0	NA	intron (NM_001409, intron 4 of 36)	MIRb|SINE|MIR	-16617	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
17.9588-2	chr13	79311575	79312074	+	0	NA	Intergenic	Intergenic	-78510	NM_024546	79596	Hs.567576	NM_024546	ENSG00000152193	RNF219	C13orf7	ring finger protein 219	protein-coding
47.0774	chr7	87085508	87086007	+	0	NA	intron (NM_000443, intron 4 of 27)	MSTB|LTR|ERVL-MaLR	19262	NM_018850	5244	Hs.654403	NM_000443	ENSG00000005471	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP binding cassette subfamily B member 4	protein-coding
21.0237-2	chr5	60662257	60662756	+	0	NA	intron (NM_020928, intron 1 of 13)	AluJb|SINE|Alu	34406	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	AFND	zinc finger SWIM-type containing 6	protein-coding
10.2457	chr3	20588774	20589273	+	0	NA	Intergenic	SVA_B|Other|Other	205063	NR_110814	101927829	Hs.639381	NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
12.7246-4	chrX	119786800	119787299	+	0	NA	Intergenic	LTR9|LTR|ERV1	-23044	NM_152692	29071	Hs.643920	NM_152692	ENSG00000171155	C1GALT1C1	C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
14.5842	chr12	12770561	12771060	+	0	NA	intron (NM_001310, intron 1 of 3)	SVA_B|Other|Other	6043	NM_001310	1389	Hs.591156	NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
19.7469	chr1	9920884	9921383	+	0	NA	intron (NM_001012329, intron 4 of 4)	intron (NM_001012329, intron 4 of 4)	-36549	NM_014944	22883	Hs.29665	NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
21.1351-2	chr14	87619001	87619500	+	0	NA	Intergenic	Intergenic	247128	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
13.9794-2	chr2	33173844	33174343	+	0	NA	intron (NM_206943, intron 2 of 33)	intron (NM_206943, intron 2 of 33)	1724	NM_206943	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
40	chr3	194798454	194798953	+	0	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	-16614	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
35.157	chr7	75513742	75514241	+	0	NA	intron (NM_001040456, intron 3 of 3)	intron (NM_001040456, intron 3 of 3)	5681	NM_001346186	57414	Hs.488827	NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
28.3863-2	chr8	134091475	134091974	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	-19121	NM_006748	6503	Hs.75367	NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
10.6048	chr20	46535984	46536483	+	0	NA	Intergenic	Intergenic	-75737	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
21.9997	chr2	55381759	55382258	+	0	NA	Intergenic	Intergenic	-17041	NM_001321904	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
13.3913	chr11	122956925	122957424	+	0	NA	intron (NM_024769, intron 2 of 6)	intron (NM_024769, intron 2 of 6)	-24131	NM_006597	3312	Hs.180414	NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
56.8613	chr3	177288026	177288525	+	0	NA	intron (NR_047568, intron 2 of 3)	L2c|LINE|L2	128566	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
15.544-4	chr6	39298206	39298705	+	0	NA	Intergenic	Intergenic	-8125	NM_001135106	83795	Hs.287765	NM_032115	ENSG00000095981	KCNK16	K2p16.1|TALK-1|TALK1	potassium two pore domain channel subfamily K member 16	protein-coding
17.5203-2	chr2	193833709	193834208	+	0	NA	Intergenic	Intergenic	219387	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
12.5806	chr2	127799375	127799874	+	0	NA	Intergenic	Intergenic	40017	NM_001320634	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
24.51	chr7	18939775	18940274	+	0	NA	intron (NM_178425, intron 21 of 24)	intron (NM_178425, intron 21 of 24)	217271	NM_000474	7291	Hs.66744	NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
25.2578	chr3	194459128	194459627	+	0	NA	intron (NR_037891, intron 1 of 3)	intron (NR_037891, intron 1 of 3)	30227	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LINC01968	-	long intergenic non-protein coding RNA 1968	ncRNA
13.7986-3	chr4	567175	567674	+	0	NA	Intergenic	Intergenic	-51939	NM_001145291	5158	Hs.623810	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
11.5614-2	chr3	77517179	77517678	+	0	NA	intron (NM_001128929, intron 1 of 24)	intron (NM_001128929, intron 1 of 24)	370265	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
12.0135-3	chr5	71674611	71675110	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	58666	NM_024754	79810	Hs.126906	NM_024754	ENSG00000049883	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
14.5717	chr14	94362089	94362588	+	0	NA	Intergenic	Intergenic	-22902	NM_001207071	90050	Hs.525550	NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding
10.575	chr17	35843444	35843943	+	0	NA	Intergenic	Intergenic	-6258	NM_007026	11072	Hs.91448	NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
12.5649	chr6	30495690	30496189	+	0	NA	Intergenic	Intergenic	-28547	NM_025263	80742	Hs.118354	NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
23.098	chr8	53064176	53064675	+	0	NA	intron (NM_014682, intron 15 of 25)	intron (NM_014682, intron 15 of 25)	-42497	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
20.4866-3	chr1	53611696	53612195	+	0	NA	Intergenic	Intergenic	-3641	NM_006671	6512	Hs.104637	NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
11.3253	chr21	35576663	35577162	+	0	NA	Intergenic	Intergenic	23934	NR_027267	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
21.3847	chr21	27864482	27864981	+	0	NA	intron (NM_052954, intron 2 of 3)	intron (NM_052954, intron 2 of 3)	80992	NM_001320768	116159	Hs.37445	NM_052954	ENSG00000166265	CYYR1	C21orf95	cysteine and tyrosine rich 1	protein-coding
85.4821-2	chr21	23763326	23763825	+	0	NA	Intergenic	AluSx3|SINE|Alu	292639	NR_038400	54143	Hs.352631	NR_038400	ENSG00000184856	LINC00308	C21orf74|NCRNA00308|PRED16	long intergenic non-protein coding RNA 308	ncRNA
18.3863-3	chr20	11549704	11550203	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-295922	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
14.437-2	chr15	63612616	63613115	+	0	NA	TTS (NR_135511)	TTS (NR_135511)	43116	NM_031301	83464	Hs.511703	NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688	aph-1 homolog B, gamma-secretase subunit	protein-coding
16.1798-4	chr1	53782791	53783290	+	0	NA	intron (NM_001018054, intron 2 of 17)	intron (NM_001018054, intron 2 of 17)	10781	NM_004631	7804	Hs.280387	NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
14.0561	chr22	39184353	39184852	+	0	NA	intron (NM_005740, intron 1 of 3)	intron (NM_005740, intron 1 of 3)	5559	NM_005740	10126	Hs.632766	NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
16.1618	chr14	19641259	19641758	+	0	NA	Intergenic	Intergenic	-8524	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
22.2548-3	chr20	16644160	16644659	+	0	NA	Intergenic	Intergenic	-66200	NM_198220	6629	Hs.280378	NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
10.0966	chr17	77454970	77455469	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	57011	NM_001082575	146713	Hs.135229	NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog 3	protein-coding
16.3827-3	chr21	36243686	36244185	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	17052	NM_001001890	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
18.2391-6	chr7	69818480	69818979	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	754824	NM_001127232	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
13.536-4	chr14	50653603	50654102	+	0	NA	intron (NM_006939, intron 5 of 22)	AluJr|SINE|Alu	44559	NM_006939	6655	Hs.291533	NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
13.7986-6	chr7	45255226	45255725	+	0	NA	Intergenic	Intergenic	58108	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
23.9903-2	chr3	156130979	156131478	+	0	NA	intron (NM_172159, intron 1 of 13)	MIR|SINE|MIR	33497	NR_046618	100874084	Hs.131282	NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
12.993-4	chr1	16108869	16109368	+	0	NA	intron (NM_001024216, intron 4 of 4)	intron (NM_001024216, intron 4 of 4)	17659	NM_001024216	54751	Hs.530101	NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
12.7084	chr8	144585069	144585568	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	38302	NM_015117	23144	Hs.521915	NM_015117	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
17.122-7	chr6	134785724	134786223	+	0	NA	non-coding (NR_038216, exon 2 of 3)	non-coding (NR_038216, exon 2 of 3)	14062	NR_125852	101928231	Hs.634168	NR_125852		LOC101928231	-	uncharacterized LOC101928231	ncRNA
11.3194	chr15	58726299	58726798	+	0	NA	TTS (NR_120338)	TTS (NR_120338)	2373	NM_000236	3990	Hs.654472	NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
32.4949	chr1	55804073	55804572	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	113008	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
18.9963-2	chr4	185020448	185020947	+	0	NA	intron (NM_153343, intron 6 of 7)	intron (NM_153343, intron 6 of 7)	118417	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
17.3518	chr9	102058547	102059046	+	0	NA	Intergenic	Intergenic	74226	NM_006808	10952	Hs.191887	NM_006808	ENSG00000106803	SEC61B	-	Sec61 translocon beta subunit	protein-coding
18.0967	chr15	78197454	78197953	+	0	NA	Intergenic	Intergenic	21485	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family member A pseudogene	pseudo
13.3442	chr14	68036344	68036843	+	0	NA	intron (NM_020715, intron 8 of 28)	intron (NM_020715, intron 8 of 28)	30424	NM_004569	5283	Hs.553497	NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
12.7246-3	chr6	34063459	34063958	+	0	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	10051	NM_001256813	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
19.2812-2	chr14	44873077	44873576	+	0	NA	Intergenic	Intergenic	103173	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
11.4327-3	chr17	48153801	48154300	+	0	NA	intron (NM_002204, intron 14 of 25)	intron (NM_002204, intron 14 of 25)	-18051	NM_001199898	5164	Hs.256667	NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
24.6344	chr7	7538345	7538844	+	0	NA	intron (NM_001037763, intron 11 of 34)	intron (NM_001037763, intron 11 of 34)	36866	NM_001037763	340267	Hs.491104	NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
33.6754	chr12	29090095	29090594	+	0	NA	Intergenic	Intergenic	-211592	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
17.4958	chr13	102217604	102218103	+	0	NA	intron (NM_001271756, intron 1 of 9)	intron (NM_001271756, intron 1 of 9)	75550	NM_001271756	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
11.0791	chr12	125087719	125088218	+	0	NA	Intergenic	Intergenic	-35958	NM_006312	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
20.5208	chr12	52844876	52845375	+	0	NA	intron (NM_005555, intron 1 of 8)	intron (NM_005555, intron 1 of 8)	785	NM_005555	3854	Hs.708950	NM_005555	ENSG00000185479	KRT6B	CK-6B|CK6B|K6B|KRTL1|PC2|PC4	keratin 6B	protein-coding
12.4795	chr6	134299321	134299820	+	0	NA	intron (NM_004865, intron 1 of 6)	MIRb|SINE|MIR	25269	NM_004865	9519	Hs.486507	NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
16.6959	chr14	100754588	100755087	+	0	NA	Intergenic	Intergenic	11143	NR_106822	102466730		NR_106822	ENSG00000100811	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
17.2816-2	chr12	131993929	131994428	+	0	NA	Intergenic	Intergenic	162163	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
15.4975	chr2	21499015	21499514	+	0	NA	Intergenic	Intergenic	152406	NM_001306137	100129278	Hs.651096	NM_001306137	ENSG00000218819	TDRD15	-	tudor domain containing 15	protein-coding
10.3245	chr11	3253049	3253548	+	0	NA	intron (NM_001039165, intron 1 of 1)	intron (NM_001039165, intron 1 of 1)	318	NM_001039165	116534	Hs.745512	NM_001039165	ENSG00000184350	MRGPRE	GPR167|MGRF|MRGE	MAS related GPR family member E	protein-coding
28.3863-4	chr3	122815508	122816007	+	0	NA	intron (NM_006810, intron 3 of 16)	intron (NM_006810, intron 3 of 16)	29901	NR_028444	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
17.5945-2	chr20	56413822	56414321	+	0	NA	Intergenic	Intergenic	-56379	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	mir-4532	microRNA 4532	ncRNA
26.7366	chr2	158877680	158878179	+	0	NA	intron (NM_001135098, intron 2 of 8)	intron (NM_001135098, intron 2 of 8)	26238	NM_001135098	151531	Hs.128427	NM_173355	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
12.8819-3	chr17	21295905	21296404	+	0	NA	intron (NM_021012, intron 1 of 2)	intron (NM_021012, intron 1 of 2)	-12294	NM_001194958	100134444	Hs.200629	NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium voltage-gated channel subfamily J member 18	protein-coding
13.1336	chr3	10378843	10379342	+	0	NA	intron (NM_001330611, intron 19 of 21)	intron (NM_001330611, intron 19 of 21)	7179	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
12.2695	chrX	71779935	71780434	+	0	NA	intron (NM_001166418, intron 2 of 8)	SVA_B|Other|Other	12769	NM_001166418	55869	Hs.310536	NM_018486	ENSG00000147099	HDAC8	CDA07|CDLS5|HD8|HDACL1|MRXS6|RPD3|WTS	histone deacetylase 8	protein-coding
18.4466-3	chrX	131182929	131183428	+	0	NA	intron (NM_001042453, intron 2 of 10)	AluJb|SINE|Alu	25542	NM_001042452	51765	Hs.444247	NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
25.9688-2	chr4	186037008	186037507	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-27160	NM_001151	291	Hs.246506	NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
12.8819	chr17	26754360	26754859	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-21379	NM_001242366	113235	Hs.446689	NM_080669	ENSG00000076351	SLC46A1	G21|HCP1|PCFT	solute carrier family 46 member 1	protein-coding
20.8355	chr6	157010372	157010871	+	0	NA	Intergenic	MIR|SINE|MIR	-88368	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
39.7469	chr1	175363778	175364277	+	0	NA	intron (NM_001328635, intron 5 of 22)	intron (NM_001328635, intron 5 of 22)	-201798	NM_001319230	9674	Hs.518138	NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
14.2251	chr8	142980781	142981280	+	0	NA	Intergenic	Intergenic	98627	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
22.8567	chr6	110733518	110734017	+	0	NA	intron (NM_003649, intron 2 of 4)	MLT1I|LTR|ERVL-MaLR	2986	NM_004032	8528	Hs.591348	NM_003649	ENSG00000203797	DDO	DASOX|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
35.3165	chr3	30710836	30711335	+	0	NA	intron (NM_001024847, intron 4 of 7)	LTR9|LTR|ERV1	63091	NM_003242	7048	Hs.82028	NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor beta receptor 2	protein-coding
59.2082	chr2	134595179	134595678	+	0	NA	Intergenic	Intergenic	-269397	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK associated protein 5	protein-coding
18.5078	chr14	82148986	82149485	+	0	NA	Intergenic	MER68|LTR|ERVL	-59830	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
10.8725	chr5	33513831	33514330	+	0	NA	Intergenic	Intergenic	73198	NM_001258438	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
61.3371	chr9	106295395	106295894	+	0	NA	Intergenic	L1PA14|LINE|L1	-208329	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
16.9037-4	chr16	27700849	27701348	+	0	NA	intron (NM_015202, intron 8 of 27)	MLT1H2|LTR|ERVL-MaLR	139630	NM_015202	23247	Hs.460459	NM_015202	ENSG00000047578	KIAA0556	JBTS26	KIAA0556	protein-coding
16.1798	chr14	66256860	66257359	+	0	NA	Intergenic	Intergenic	319289	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
10.716-2	chr4	48185039	48185538	+	0	NA	intron (NM_003215, intron 2 of 17)	MIRb|SINE|MIR	-49015	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
11.9044-2	chr2	3005331	3005830	+	0	NA	intron (NR_110228, intron 3 of 6)	intron (NR_110228, intron 3 of 6)	124218	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
13.536	chr15	86372047	86372546	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	3430	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
11.7522	chr13	31327053	31327552	+	0	NA	intron (NM_001204406, intron 4 of 5)	intron (NM_001204406, intron 4 of 5)	17657	NM_001629	241	Hs.507658	NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
18.0688-2	chr13	24024407	24024906	+	0	NA	Intergenic	Intergenic	-16789	NM_014363	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
12.7084-2	chr3	25029352	25029851	+	0	NA	intron (NM_001290216, intron 2 of 10)	intron (NM_001290216, intron 2 of 10)	158787	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
24.5593	chr4	127279129	127279628	+	0	NA	Intergenic	LFSINE_Vert|SINE|SINE	850964	NR_031746	100302267		NR_031746	ENSG00000283550	MIR2054	hsa-mir-2054	microRNA 2054	ncRNA
21.296	chrX	68064278	68064777	+	0	NA	Intergenic	Intergenic	15687	NM_004429	1947	Hs.144700	NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
19.5468-2	chr1	116767134	116767633	+	0	NA	Intergenic	Intergenic	113007	NM_152367	126868	Hs.376194	NM_152367	ENSG00000173212	MAB21L3	C1orf161	mab-21 like 3	protein-coding
29.1009-2	chr17	51431127	51431626	+	0	NA	Intergenic	Intergenic	368496	NM_001243552	100506650	Hs.146556	NM_001243552		C17orf112	-	chromosome 17 open reading frame 112	protein-coding
20.2045-4	chr3	15340451	15340950	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	33436	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
11.0018	chr3	194821554	194822053	+	0	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	6486	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
12.0971-2	chr2	25109378	25109877	+	0	NA	intron (NM_004036, intron 2 of 21)	intron (NM_004036, intron 2 of 21)	33259	NM_001320613	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC-III|AC3	adenylate cyclase 3	protein-coding
20.8884	chr8	98883632	98884131	+	0	NA	intron (NM_002380, intron 1 of 18)	intron (NM_002380, intron 1 of 18)	2632	NM_030583	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
11.4146	chr2	208773328	208773827	+	0	NA	intron (NM_001080475, intron 5 of 7)	MIR3|SINE|MIR	116707	NM_001080475	389072	Hs.159188	NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
10.8566	chr14	104808328	104808827	+	0	NA	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	203517	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
11.9382	chr1	10089310	10089809	+	0	NA	Intergenic	SVA_D|Other|Other	-3482	NM_006048	10277	Hs.593974	NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
15.3165-2	chr8	25140810	25141309	+	0	NA	intron (NM_024940, intron 5 of 51)	intron (NM_024940, intron 5 of 51)	-61859	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
20.8513-2	chr5	122790633	122791132	+	0	NA	Intergenic	Intergenic	-31596	NM_001166226	153241	Hs.483209	NM_153223	ENSG00000168944	CEP120	CCDC100|SRTD13	centrosomal protein 120	protein-coding
12.1396	chr9	132390201	132390700	+	0	NA	intron (NM_001286799, intron 1 of 3)	intron (NM_001286799, intron 1 of 3)	1727	NM_001286799	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
11.4997	chr6	157521634	157522133	+	0	NA	exon (NM_001346813, exon 18 of 20)	exon (NM_001346813, exon 18 of 20)	223408	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
29.2082	chr3	122384007	122384506	+	0	NA	Intergenic	MER67C|LTR|ERV1	-15416	NM_017554	54625	Hs.518203	NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
81.463-2	chr7	135402339	135402838	+	0	NA	intron (NM_012450, intron 2 of 15)	MLT2B1|LTR|ERVL	10364	NM_001318192	26266	Hs.490241	NM_012450	ENSG00000164707	SLC13A4	NAS2|SUT-1|SUT1	solute carrier family 13 member 4	protein-coding
21.9586	chr20	11266493	11266992	+	0	NA	Intergenic	Intergenic	-12711	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
13.536-5	chrX	68517296	68517795	+	0	NA	Intergenic	Intergenic	118145	NR_103715	100996279		NR_103715	ENSG00000215162	LINC00269	CXorf62|NCRNA00269	long intergenic non-protein coding RNA 269	ncRNA
29.6257	chr5	112567897	112568749	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	62289	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
30.0218	chr5	121920593	121921092	+	0	NA	promoter-TSS (NR_134281)	promoter-TSS (NR_134281)	-547	NR_134281	101927357	Hs.639856	NR_134281		LOC101927357	-	uncharacterized LOC101927357	ncRNA
22.644	chr7	107714713	107715212	+	0	NA	intron (NM_007356, intron 17 of 33)	AluSz6|SINE|Alu	55839	NM_001318046	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
37.5449	chr14	51862053	51862552	+	0	NA	Intergenic	Intergenic	62191	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	-	long intergenic non-protein coding RNA 640	ncRNA
32.3508-3	chr13	52403652	52404151	+	0	NA	intron (NR_027047, intron 2 of 4)	intron (NR_027047, intron 2 of 4)	15385	NR_027048	283521	Hs.649896	NM_178515	ENSG00000281106	LINC00282	NCRNA00282	long intergenic non-protein coding RNA 282	ncRNA
10.0305	chr4	26153685	26154184	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-167398	NM_005349	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
26.9465-2	chr12	3333534	3334033	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	147262	NM_001168320	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
15.391	chr2	241885375	241885874	+	0	NA	Intergenic	Intergenic	21244	NR_033841	200772	Hs.647893	NR_033841	ENSG00000233392	LOC200772	-	uncharacterized LOC200772	ncRNA
18.1816	chr4	146637290	146637789	+	0	NA	intron (NM_001080531, intron 2 of 5)	MLT1J2|LTR|ERVL-MaLR	36183	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
21.1351	chr1	59014138	59014637	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-1916	NM_145243	115209	Hs.425769	NM_145243	ENSG00000162600	OMA1	2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase	OMA1 zinc metallopeptidase	protein-coding
22.2257	chr3	161192405	161192904	+	0	NA	Intergenic	Intergenic	-21942	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
22.815-2	chr1	53948432	53948931	+	0	NA	Intergenic	Intergenic	23609	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
10.3574	chr2	57926151	57926650	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-208386	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
10.2503-2	chr7	145717181	145717680	+	0	NA	Intergenic	Intergenic	-96023	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
24.9894	chr1	160335043	160335542	+	0	NA	Intergenic	Intergenic	-1569	NM_005598	4807	Hs.30956	NM_005598	ENSG00000171786	NHLH1	HEN1|NSCL|NSCL1|bHLHa35	nescient helix-loop-helix 1	protein-coding
17.7989	chr13	48732306	48732805	+	0	NA	Intergenic	Intergenic	-63278	NM_001270629	29079	Hs.181112	NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
38.1531	chr4	26841121	26841620	+	0	NA	Intergenic	L2|LINE|L2	20496	NR_134675	105374546	Hs.548859	NR_134673		LOC105374546	-	uncharacterized LOC105374546	ncRNA
13.7263	chr4	115650399	115650898	+	0	NA	Intergenic	Intergenic	72733	NR_030303	693162		NR_030303	ENSG00000207931	MIR577	MIRN577|hsa-mir-577|mir-577	microRNA 577	ncRNA
13.7675	chr6	104248127	104248626	+	0	NA	Intergenic	Intergenic	1059045	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
15.5909	chr6	158448731	158449230	+	0	NA	intron (NM_003898, intron 2 of 26)	intron (NM_003898, intron 2 of 26)	10900	NM_001178088	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
12.8567-3	chr2	54653965	54654464	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-29240	NM_003128	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
13.1876	chr1	163665002	163665501	+	0	NA	Intergenic	Intergenic	-272270	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo
19.1009	chrX	15931193	15931692	+	0	NA	Intergenic	Intergenic	-58305	NM_001272071	8905	Hs.121592	NM_003916	ENSG00000182287	AP1S2	DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor related protein complex 1 sigma 2 subunit	protein-coding
23.5853-5	chr2	42317486	42317985	+	0	NA	Intergenic	Intergenic	42574	NM_138370	91461	Hs.408542	NM_138370	ENSG00000162878	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
15.1145	chr3	31238367	31238866	+	0	NA	Intergenic	Intergenic	-35337	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
11.9044	chr15	21928006	21928505	+	0	NA	Intergenic	LTR9|LTR|ERV1	12484	NR_027053	646214	Hs.510697	NR_027053		LOC646214	-	p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene	pseudo
11.1464	chr13	50414333	50414832	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-47525	NM_002267	3839	Hs.527919	NM_002267	ENSG00000102753	KPNA3	IPOA4|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
24.4733	chr9	1960311	1960810	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-54659	NM_001289397	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
33.7779-2	chr4	165911635	165912134	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13066	NM_001012414	391712	Hs.654633	NM_001012414	ENSG00000183439	TRIM61	RNF35	tripartite motif containing 61	protein-coding
20.348	chr8	131431181	131431680	+	0	NA	intron (NM_001247996, intron 1 of 30)	intron (NM_001247996, intron 1 of 30)	24476	NM_018482	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
16.968	chr1	244933810	244934309	+	0	NA	Intergenic	L2c|LINE|L2	-64549	NM_001312871	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20, cytochrome c oxidase assembly factor	protein-coding
53.4486	chr5	31944716	31945215	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	-8700	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
10.4335	chr15	73127637	73128136	+	0	NA	Intergenic	Intergenic	-51760	NR_023319	83440	Hs.562587	NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
15.5284	chr3	3814522	3815021	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-26344	NM_001324188	57633	Hs.163244	NM_020873	ENSG00000175928	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
17.5945-4	chrX	20080176	20080675	+	0	NA	intron (NM_152780, intron 3 of 15)	MIRb|SINE|MIR	-45120	NR_037414	100500809		NR_037414	ENSG00000264566	MIR23C	hsa-mir-23c|mir-23c	microRNA 23c	ncRNA
13.4775	chr8	144100750	144101249	+	0	NA	intron (NM_001127213, intron 1 of 3)	intron (NM_001127213, intron 1 of 3)	1097	NM_001127213	4061	Hs.521903	NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 complex, locus E	protein-coding
17.7469	chr2	197924128	197924627	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-132922	NM_001321099	80055	Hs.229988	NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding
23.2883	chr2	1991098	1991597	+	0	NA	intron (NM_001329845, intron 5 of 24)	intron (NM_001329845, intron 5 of 24)	-243028	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
13.019-2	chr17	65042439	65042938	+	0	NA	intron (NM_000727, intron 1 of 3)	intron (NM_000727, intron 1 of 3)	2036	NM_000727	786	Hs.147989	NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
13.7059	chr3	127604915	127605414	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-36738	NM_207335	166348	Hs.132087	NM_207335	ENSG00000187715	KBTBD12	KLHDC6	kelch repeat and BTB domain containing 12	protein-coding
13.8195-4	chr12	125629593	125630092	+	0	NA	Intergenic	Intergenic	79929	NM_023928	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
16.1618-3	chr3	177900084	177900583	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-236656	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
25.544-2	chr10	36327138	36327637	+	0	NA	Intergenic	LTR33|LTR|ERVL	260157	NR_110138	102578074		NR_110138	ENSG00000280719	PCAT5	LINC01452|TPCAT-10-36067	prostate cancer associated transcript 5 (non-protein coding)	ncRNA
21.3966	chr7	79451804	79452303	+	0	NA	Intergenic	Intergenic	-312087	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
15.544-3	chr2	182050556	182051055	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	62241	NR_130784	101927156	Hs.580074	NR_130784	ENSG00000234663	LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
21.798	chr19	49157872	49158371	+	0	NA	intron (NR_004401, intron 1 of 4)	intron (NR_004401, intron 1 of 4)	-8552	NR_136241	770	Hs.428446	NM_001217	ENSG00000063180	CA11	CARPX1	carbonic anhydrase 11	protein-coding
10.8355	chr17	71973253	71973752	+	0	NA	Intergenic	Intergenic	-148826	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
39.5468	chr20	13895912	13896411	+	0	NA	intron (NR_073206, intron 4 of 20)	intron (NR_073206, intron 4 of 20)	75104	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	SEL1L2 ERAD E3 ligase adaptor subunit	protein-coding
15.7187	chr17	78246031	78246530	+	0	NA	intron (NM_001256071, intron 2 of 67)	MSTB2|LTR|ERVL-MaLR	11620	NM_020954	57674	Hs.195642	NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
25.7349	chr12	110094556	110095055	+	0	NA	Intergenic	Intergenic	-57382	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
15.0585-2	chr6	23880041	23880540	+	0	NA	Intergenic	Intergenic	-246124	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
20.6651	chr18	50674369	50674868	+	0	NA	intron (NM_005215, intron 7 of 28)	intron (NM_005215, intron 7 of 28)	-88853	NR_130465	100616232		NR_130465	ENSG00000263872	MIR4528	-	microRNA 4528	ncRNA
19.4692-3	chr3	25033004	25033503	+	0	NA	intron (NM_001290216, intron 2 of 10)	intron (NM_001290216, intron 2 of 10)	162439	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
28.8941	chr5	22651410	22651909	+	0	NA	intron (NM_004061, intron 1 of 14)	THE1D|LTR|ERVL-MaLR	202072	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
12.7246-2	chr12	8778909	8779408	+	0	NA	Intergenic	SVA_E|Other|Other	-13695	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation induced cytidine deaminase	protein-coding
20.7109	chr4	2887839	2888338	+	0	NA	intron (NM_001286645, intron 5 of 17)	intron (NM_001286645, intron 5 of 17)	42211	NM_001286645	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
16.4782-2	chr4	86663064	86663563	+	0	NA	intron (NM_001025616, intron 3 of 9)	intron (NM_001025616, intron 3 of 9)	19692	NR_039656	100616349		NR_039656	ENSG00000266421	MIR4451	mir-4451	microRNA 4451	ncRNA
16.9037	chr8	62508186	62508685	+	0	NA	intron (NM_004318, intron 14 of 24)	L1M2|LINE|L1	93973	NM_001164752	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
11.9791-3	chr9	130406663	130407162	+	0	NA	intron (NM_001032221, intron 1 of 18)	intron (NM_001032221, intron 1 of 18)	32426	NM_001032221	6812	Hs.288229	NM_003165	ENSG00000136854	STXBP1	MUNC18-1|NSEC1|P67|RBSEC1|UNC18	syntaxin binding protein 1	protein-coding
12.1968-3	chr15	84041328	84041827	+	0	NA	Intergenic	Intergenic	-74403	NM_001324182	6457	Hs.270055	NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
26.2893	chr22	39752383	39752882	+	0	NA	intron (NM_145731, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	6678	NM_004711	9145	Hs.216226	NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
15.784	chr13	52092946	52093445	+	0	NA	Intergenic	Intergenic	-33530	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
19.9568-3	chr3	34263092	34263591	+	0	NA	Intergenic	Intergenic	423278	NM_013374	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
12.7003	chr18	29778172	29778671	+	0	NA	intron (NM_001308171, intron 5 of 14)	intron (NM_001308171, intron 5 of 14)	8434	NM_001308171	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
11.8977	chr2	153322393	153322892	+	0	NA	intron (NM_052905, intron 1 of 25)	intron (NM_052905, intron 1 of 25)	130891	NM_052905	114793	Hs.654630	NM_052905	ENSG00000157827	FMNL2	FHOD2	formin like 2	protein-coding
22.4489	chr11	35026587	35027086	+	0	NA	Intergenic	Intergenic	63452	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
11.549-2	chr14	104890800	104891299	+	0	NA	Intergenic	Intergenic	-154972	NM_001286399	400258	Hs.153827	NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
13.4969	chr5	11767066	11767565	+	0	NA	intron (NR_109988, intron 1 of 21)	MER91C|DNA|hAT-Tip100	136840	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
22.815	chr16	10835704	10836203	+	0	NA	Intergenic	MIRb|SINE|MIR	-1690	NM_001278506	4682	Hs.81469	NM_002484	ENSG00000103274	NUBP1	NBP|NBP1|NBP35	nucleotide binding protein 1	protein-coding
15.5752	chr8	10235267	10235766	+	0	NA	intron (NM_001199729, intron 6 of 6)	intron (NM_001199729, intron 6 of 6)	-96559	NR_120604	101929191	Hs.595262	NR_120604	ENSG00000253641	LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
14.2136-2	chr2	55452055	55452554	+	0	NA	intron (NM_152385, intron 2 of 12)	intron (NM_152385, intron 2 of 12)	-6735	NM_001135592	6233	Hs.311640	NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80	ribosomal protein S27a	protein-coding
28.7943-3	chr5	149840732	149841231	+	0	NA	Intergenic	Intergenic	-11662	NM_005617	6208	Hs.744846	NM_005617	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
17.0774	chr5	1596528	1597027	+	0	NA	TTS (NR_003713)	TTS (NR_003713)	-2131	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
15.9688-6	chr16	9031618	9032117	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-1281	NM_001286458	7874	Hs.386939	NM_003470	ENSG00000187555	USP7	HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
18.4771	chr2	215496056	215496555	+	0	NA	Intergenic	Intergenic	121399	NR_047698	100885780	Hs.665982	NR_047698	ENSG00000224257	VWC2L-IT1	-	VWC2L intronic transcript 1	ncRNA
10.0524	chr8	142849999	142850498	+	0	NA	Intergenic	Intergenic	17426	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
10.7831	chr22	35921456	35921955	+	0	NA	Intergenic	Intergenic	-15647	NM_014310	23551	Hs.474711	NM_014310	ENSG00000100302	RASD2	MGC:4834|Rhes|TEM2	RASD family member 2	protein-coding
21.9382-3	chr14	23194382	23194881	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-41100	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	OXA1L, mitochondrial inner membrane protein	protein-coding
13.83	chr12	117879457	117879956	+	0	NA	Intergenic	Intergenic	-80099	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
25.2433	chr9	77661785	77662284	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-18688	NM_152420	138199	Hs.567688	NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
25.0169	chr5	123906202	123906701	+	0	NA	Intergenic	Intergenic	-132238	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
11.2901-2	chr1	184179083	184179582	+	0	NA	Intergenic	Intergenic	158547	NM_052965	116461	Hs.548197	NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
21.1691-3	chr5	167605242	167605741	+	0	NA	intron (NM_001080428, intron 10 of 24)	intron (NM_001080428, intron 10 of 24)	53886	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
12.1183-3	chrX	152029566	152030065	+	0	NA	intron (NM_015922, intron 4 of 7)	L1ME3C|LINE|L1	30304	NM_015922	50814	Hs.57698	NM_015922	ENSG00000147383	NSDHL	H105E3|SDR31E1|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding
11.4327-2	chr17	20182971	20183470	+	0	NA	intron (NM_001033555, intron 10 of 12)	L1MB3|LINE|L1	-41267	NR_023380	348254	Hs.462475	NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
12.2988-2	chr6	92308115	92308614	+	0	NA	Intergenic	LTR51|LTR|ERV1	76986	NR_039786	100616174		NR_039786	ENSG00000263734	MIR4643	-	microRNA 4643	ncRNA
18.8273-3	chr8	106532625	106533124	+	0	NA	intron (NM_012082, intron 3 of 7)	intron (NM_012082, intron 3 of 7)	201727	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19.6658-2	chr11	875703	876202	+	0	NA	intron (NM_001142675, intron 10 of 12)	intron (NM_001142675, intron 10 of 12)	31506	NM_001025237	7106	Hs.654836	NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
28.2102	chr1	223101468	223101967	+	0	NA	intron (NM_032890, intron 2 of 9)	intron (NM_032890, intron 2 of 9)	113286	NM_032890	84976	Hs.528817	NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
13.536-3	chr6	67649754	67650253	+	0	NA	Intergenic	Intergenic	-1115240	NR_125869	102723883	Hs.566528	NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
21.3312	chr2	46566746	46567551	+	0	NA	intron (NM_001430, intron 1 of 15)	MLT1A0|LTR|ERVL-MaLR	42607	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
11.3371	chr3	160592388	160592887	+	0	NA	intron (NR_134243, intron 1 of 5)	MLT1G1|LTR|ERVL-MaLR	4251	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
11.2321	chr6	70663354	70663853	+	0	NA	intron (NM_001858, intron 9 of 50)	intron (NM_001858, intron 9 of 50)	87155	NM_001858	1310	Hs.444842	NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
59.2082-2	chr8	128926432	128926931	+	0	NA	intron (NR_003367, intron 2 of 8)	L1MB5|LINE|L1	34288	NR_103558	641384	Hs.629674	NM_001037234	ENSG00000280055	TMEM75	-	transmembrane protein 75	ncRNA
10.5799-3	chr11	3071835	3072334	+	0	NA	intron (NM_001014437, intron 1 of 22)	intron (NM_001014437, intron 1 of 22)	6597	NM_001194997	833	Hs.274873	NM_001751	ENSG00000110619	CARS	CARS1|CYSRS|MGC:11246	cysteinyl-tRNA synthetase	protein-coding
17.0774-2	chr13	98865963	98866462	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	5434	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
15.7675-3	chr6	35502198	35502697	+	0	NA	Intergenic	L2|LINE|L2	-21732	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
11.7718	chr20	48539167	48539666	+	0	NA	intron (NR_134564, intron 2 of 2)	SVA_D|Other|Other	7057	NR_134564	105372653	Hs.589895	NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
19.5861-4	chr11	92484648	92485147	+	0	NA	intron (NM_001008781, intron 3 of 24)	L3|LINE|CR1	163897	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
17.6195	chr6	148262135	148262634	+	0	NA	Intergenic	Intergenic	-331028	NM_001346505	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
17.2584-2	chr11	57043976	57044475	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-39298	NM_005161	187	Hs.438311	NM_005161	ENSG00000134817	APLNR	AGTRL1|APJ|APJR|HG11	apelin receptor	protein-coding
11.7457	chr17	58199519	58200018	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-19488	NR_027408	653653	Hs.631741	NR_027408	ENSG00000280852	LOC653653	-	adaptor related protein complex 1 sigma 2 subunit pseudogene	pseudo
26.5561	chr2	127455894	127456393	+	0	NA	Intergenic	Intergenic	42632	NM_016815	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
26.8825	chr9	134917128	134917627	+	0	NA	intron (NM_004269, intron 2 of 7)	intron (NM_004269, intron 2 of 7)	37897	NM_001253881	9442	Hs.374262	NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|TRAP37	mediator complex subunit 27	protein-coding
26.6959	chr3	170807298	170807797	+	0	NA	intron (NM_001161560, intron 22 of 31)	intron (NM_001161560, intron 22 of 31)	17001	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
22.1896	chr12	2591200	2591699	+	0	NA	intron (NM_001129830, intron 5 of 47)	intron (NM_001129830, intron 5 of 47)	189937	NR_046579	100874235	Hs.667644	NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
30.1637	chr2	121469659	121470158	+	0	NA	Intergenic	Intergenic	-84959	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
22.652	chr3	72389697	72390196	+	0	NA	Intergenic	Intergenic	105828	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
12.4336	chr6	102280238	102280737	+	0	NA	intron (NM_001166247, intron 9 of 16)	intron (NM_001166247, intron 9 of 16)	433626	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
17.122-5	chr8	18365609	18366108	+	0	NA	Intergenic	Intergenic	117103	NM_000015	10	Hs.2	NM_000015	ENSG00000156006	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2	protein-coding
11.3608	chr16	49873069	49873568	+	0	NA	intron (NM_001271620, intron 1 of 7)	intron (NM_001271620, intron 1 of 7)	-16669	NM_015069	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
12.2915-5	chr8	142274166	142274665	+	0	NA	Intergenic	Intergenic	-9687	NM_001286646	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
10.3953	chr16	364755	365254	+	0	NA	intron (NM_003502, intron 2 of 10)	intron (NM_003502, intron 2 of 10)	31886	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
18.9279-3	chr14	92863388	92863887	+	0	NA	intron (NM_153646, intron 2 of 16)	intron (NM_153646, intron 2 of 16)	73485	NM_153646	123041	Hs.385530	NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
29.8297	chr15	93808114	93808613	+	0	NA	Intergenic	Charlie13b|DNA|hAT-Charlie	-175920	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
10.7988-2	chr6	17868019	17868518	+	0	NA	intron (NM_022113, intron 4 of 38)	intron (NM_022113, intron 4 of 38)	119586	NM_001243423	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
47.9317	chr6	148634564	148635063	+	0	NA	intron (NM_001346505, intron 1 of 19)	intron (NM_001346505, intron 1 of 19)	-28916	NM_015278	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
15.0446-2	chr6	36695205	36695704	+	0	NA	exon (NM_001257357, exon 11 of 14)	exon (NM_001257357, exon 11 of 14)	29732	NM_001314018	57699	Hs.657869	NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
20.7935-2	chr2	47456292	47456791	+	0	NA	intron (NR_110207, intron 1 of 2)	intron (NR_110207, intron 1 of 2)	-52466	NM_001305625	805	Hs.468442	NM_001743	ENSG00000143933	CALM2	CAMII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
14.2022	chr6	80314728	80315227	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-25845	NM_031469	83699	Hs.302772	NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
30.4624	chr12	29091382	29091881	+	0	NA	Intergenic	Intergenic	-210305	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
12.8819-2	chr17	20349609	20350108	+	0	NA	intron (NR_144552, intron 4 of 4)	intron (NR_144552, intron 4 of 4)	9721	NR_144552	339256	Hs.185235	NR_144552		NOS2P3	-	nitric oxide synthase 2 pseudogene 3	pseudo
15.4668	chr2	72240237	72240736	+	0	NA	Intergenic	Intergenic	134505	NM_019885	56603	Hs.91546	NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
15.1145-2	chr20	24362936	24363435	+	0	NA	Intergenic	Intergenic	-86650	NM_024893	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
10.1278-4	chr6	158100986	158101485	+	0	NA	Intergenic	Intergenic	-142968	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
25.867	chr7	45334755	45335254	+	0	NA	Intergenic	Intergenic	137637	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
19.8297-6	chrX	49123005	49123504	+	0	NA	Intergenic	Intergenic	-1966	NM_001114377	50943	Hs.247700	NM_014009	ENSG00000049768	FOXP3	AIID|DIETER|IPEX|JM2|PIDX|XPID	forkhead box P3	protein-coding
15.9688-3	chr21	46257442	46257941	+	0	NA	Intergenic	Intergenic	-19647	NM_006936	6612	Hs.474005	NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin-like modifier 3	protein-coding
16.3264-3	chr7	16831503	16832002	+	0	NA	TTS (NM_006408)	TTS (NM_006408)	12986	NM_006408	10551	Hs.530009	NM_006408	ENSG00000106541	AGR2	AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2	anterior gradient 2, protein disulphide isomerase family member	protein-coding
37.3993	chr7	142512715	142513214	+	0	NA	Intergenic	Intergenic	34207	NR_001296	154754	Hs.449281	NR_001296		PRSS3P2	T6|TRY6	protease, serine 3 pseudogene 2	pseudo
10.6148-2	chr5	10623370	10623869	+	0	NA	intron (NM_001164440, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	59184	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
17.6195-3	chr2	145113706	145114205	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-23854	NM_001284235	79712	Hs.44780	NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
17.1897-3	chr13	41092683	41093182	+	0	NA	Intergenic	Intergenic	-37789	NR_024505	646982	Hs.287664	NR_024505	ENSG00000215483	LINC00598	-	long intergenic non-protein coding RNA 598	ncRNA
19.5861	chr19	15234625	15235124	+	0	NA	intron (NM_006844, intron 2 of 15)	intron (NM_006844, intron 2 of 15)	1736	NM_006844	10994	Hs.78880	NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|ILV2H	ilvB acetolactate synthase like	protein-coding
22.7737	chr9	2559445	2559944	+	0	NA	intron (NR_015375, intron 1 of 3)	L1M1|LINE|L1	-62080	NM_001322225	7436	Hs.370422	NM_003383	ENSG00000147852	VLDLR	CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH	very low density lipoprotein receptor	protein-coding
14.908	chr3	151256710	151257209	+	0	NA	Intergenic	Intergenic	26824	NR_049818	100847036		NR_049818	ENSG00000264330	MIR5186	-	microRNA 5186	ncRNA
19.4692	chr21	33709335	33709834	+	0	NA	intron (NM_014825, intron 27 of 38)	intron (NM_014825, intron 27 of 38)	40047	NR_002996	677846	Hs.712293	NR_002996	ENSG00000200792	SNORA80A	ACA67|SNORA80	small nucleolar RNA, H/ACA box 80A	snoRNA
14.2597-3	chr8	128904924	128905423	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	55796	NR_103558	641384	Hs.629674	NM_001037234	ENSG00000280055	TMEM75	-	transmembrane protein 75	ncRNA
18.7615	chr2	178505975	178506474	+	0	NA	intron (NM_001077358, intron 18 of 18)	intron (NM_001077358, intron 18 of 18)	-22530	NM_152275	92104	Hs.128384	NM_152275	ENSG00000197557	TTC30A	IFT70A	tetratricopeptide repeat domain 30A	protein-coding
11.6304	chr2	152697300	152697799	+	0	NA	intron (NM_001145798, intron 12 of 12)	intron (NM_001145798, intron 12 of 12)	-12540	NM_012097	26225	Hs.470233	NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
37.6447	chr2	15136435	15136934	+	0	NA	Intergenic	Intergenic	361469	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding
18.3863-5	chr17	74444269	74444768	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	4770	NM_022066	63893	Hs.16130	NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
13.1336-3	chr10	25162289	25162788	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	79035	NM_001282786	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
32.5493-2	chr3	120225328	120225827	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-55659	NM_007085	11167	Hs.269512	NM_007085	ENSG00000163430	FSTL1	FRP|FSL1|MIR198|OCC-1|OCC1|tsc36	follistatin like 1	protein-coding
12.993-2	chr13	62437122	62437621	+	0	NA	Intergenic	LTR14A|LTR|ERVK	166310	NR_046995	100874143	Hs.552684	NR_046995	ENSG00000229578	LINC00358	-	long intergenic non-protein coding RNA 358	ncRNA
29.1009	chr5	37938126	37938625	+	0	NA	Intergenic	Intergenic	-10218	NR_134262	105374729	Hs.150642	NR_134262	ENSG00000251518	LINC02110	-	long intergenic non-protein coding RNA 2110	ncRNA
21.8842	chr7	131501129	131501628	+	0	NA	Intergenic	Intergenic	-93601	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
14.9485-5	chr12	3228900	3229399	+	0	NA	intron (NM_006675, intron 2 of 8)	MIR3|SINE|MIR	42628	NM_001168320	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
20.3245	chr9	126531903	126532402	+	0	NA	intron (NM_024820, intron 3 of 20)	intron (NM_024820, intron 3 of 20)	160265	NM_020946	57706	Hs.744995	NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
25.2143	chr1	169546010	169546509	+	0	NA	intron (NM_000130, intron 2 of 24)	intron (NM_000130, intron 2 of 24)	9510	NM_000130	2153	Hs.30054	NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
14.2251-3	chr7	31380151	31380650	+	0	NA	5' UTR (NM_022728, exon 1 of 2)	5' UTR (NM_022728, exon 1 of 2)	138	NM_022728	63974	Hs.45152	NM_022728	ENSG00000164600	NEUROD6	Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2	neuronal differentiation 6	protein-coding
17.9048	chrX	150126554	150127053	+	0	NA	Intergenic	Intergenic	-22178	NM_001301231	3149	Hs.19114	NM_005342	ENSG00000029993	HMGB3	HMG-2a|HMG-4|HMG2A|HMG4	high mobility group box 3	protein-coding
31.9382	chr8	64219993	64220492	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	138680	NM_001277818	253943	Hs.491861	NM_152758	ENSG00000185728	YTHDF3	-	YTH N6-methyladenosine RNA binding protein 3	protein-coding
20.4964-2	chr17	77409685	77410184	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	102296	NM_001082575	146713	Hs.135229	NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog 3	protein-coding
32.1325	chr2	202906794	202907293	+	0	NA	Intergenic	L2a|LINE|L2	7733	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
14.2829-2	chrX	48330477	48330976	+	0	NA	Intergenic	Intergenic	-2082	NM_033518	92745	Hs.195155	NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
21.2726	chr10	133774994	133775493	+	0	NA	Intergenic	Intergenic	20274	NM_004052	664	Hs.144873	NM_004052	ENSG00000176171	BNIP3	NIP3	BCL2 interacting protein 3	protein-coding
18.5699-3	chr14	75401319	75401818	+	0	NA	Intergenic	Intergenic	-12423	NM_031464	83694	Hs.414481	NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
18.2102-3	chr1	236046674	236047173	+	0	NA	promoter-TSS (NM_001301365)	promoter-TSS (NM_001301365)	85	NR_102436	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
21.5058	chr3	94991541	94992040	+	0	NA	Intergenic	Intergenic	334683	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
19.7881	chr5	101642904	101643403	+	0	NA	Intergenic	L2a|LINE|L2	-10900	NM_180991	353189	Hs.127648	NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
46.3827-3	chr6	88589149	88589648	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	94820	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
19.5861-3	chr3	178458228	178458727	+	0	NA	intron (NM_001278911, intron 1 of 4)	intron (NM_001278911, intron 1 of 4)	119716	NR_126561	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
32.3284-2	chr8	62296600	62297099	+	0	NA	intron (NM_173519, intron 3 of 5)	intron (NM_173519, intron 3 of 5)	96324	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
20.5799	chr4	170749835	170750334	+	0	NA	Intergenic	SVA_B|Other|Other	-70991	NM_017867	54969	Hs.406756	NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
14.3063	chr14	77065485	77065984	+	0	NA	Intergenic	Intergenic	-162501	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
26.073	chr8	133425897	133426396	+	0	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	33363	NM_001204824	3786	Hs.374023	NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
10.716	chr9	85812460	85812959	+	0	NA	Intergenic	Intergenic	69493	NM_001244962	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
17.8781-4	chr2	100260437	100260936	+	0	NA	intron (NM_001025108, intron 12 of 23)	intron (NM_001025108, intron 12 of 23)	-154168	NR_135653	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
27.9317	chr13	28099551	28100050	+	0	NA	Intergenic	Intergenic	-75061	NM_152912	219402	Hs.534582	NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
21.0403	chr3	29805503	29806002	+	0	NA	intron (NM_001003793, intron 6 of 14)	intron (NM_001003793, intron 6 of 14)	169895	NR_046556	100873977	Hs.581453	NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
13.4582-2	chr7	103292380	103292879	+	0	NA	intron (NM_173054, intron 14 of 63)	intron (NM_173054, intron 14 of 63)	-206005	NM_206884	375611	Hs.585146	NM_198999	ENSG00000170615	SLC26A5	DFNB61|PRES	solute carrier family 26 member 5	protein-coding
17.0553-4	chr2	9519045	9519544	+	0	NA	intron (NM_001135191, intron 19 of 26)	intron (NM_001135191, intron 19 of 26)	43495	NR_134951	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
52.2475	chr12	6948894	6949393	+	0	NA	promoter-TSS (NM_001297571)	promoter-TSS (NM_001297571)	-875	NM_001297571	2784	Hs.631657	NM_002075	ENSG00000111664	GNB3	CSNB1H	G protein subunit beta 3	protein-coding
18.8941-2	chr5	38492428	38492927	+	0	NA	intron (NM_001127671, intron 14 of 19)	intron (NM_001127671, intron 14 of 19)	47099	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
25.3018-2	chr2	11577681	11578180	+	0	NA	Intergenic	Intergenic	28373	NM_212540	1876	Hs.603093	NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
22.8735	chr7	29997488	29997987	+	0	NA	intron (NM_001145515, intron 1 of 6)	7SK|RNA|RNA	31688	NM_014766	9805	Hs.520740	NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
22.9243-2	chr8	54117693	54118192	+	0	NA	Intergenic	Intergenic	46315	NM_000912	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
10.4479	chr5	80717924	80718423	+	0	NA	intron (NM_001345886, intron 15 of 15)	intron (NM_001345886, intron 15 of 15)	-28185	NM_130767	134526	Hs.591756	NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
16.6959-3	chr19	5035280	5035779	+	0	NA	intron (NM_015015, intron 3 of 22)	intron (NM_015015, intron 3 of 22)	66405	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding
11.7263	chr20	49650167	49650666	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-10741	NM_002237	3755	Hs.118695	NM_002237	ENSG00000026559	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel modifier subfamily G member 1	protein-coding
22.233-2	chr3	83927037	83927536	+	0	NA	Intergenic	Intergenic	991440	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
49.8297-3	chr15	94010477	94010976	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-378283	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
23.0103	chr1	74951157	74951656	+	0	NA	intron (NM_015978, intron 21 of 24)	MLT1E1A|LTR|ERVL-MaLR	-91708	NR_121671	101927320	Hs.662589	NR_121670	ENSG00000234497	ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
30.2182	chr12	101151841	101152340	+	0	NA	Intergenic	Intergenic	-36284	NM_178826	121601	Hs.58785	NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
21.2494	chr5	43631368	43631867	+	0	NA	intron (NM_001331026, intron 6 of 20)	intron (NM_001331026, intron 6 of 20)	-28285	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
22.6043	chr1	183257928	183258427	+	0	NA	intron (NM_170706, intron 4 of 10)	intron (NM_170706, intron 4 of 10)	15832	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
10.4239-2	chr2	11538761	11539260	+	0	NA	intron (NR_047499, intron 1 of 2)	ERV3-16A3_I-int|LTR|ERVL	4903	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	ncRNA
12.4489-2	chr8	65553974	65554473	+	0	NA	intron (NM_004820, intron 1 of 5)	intron (NM_004820, intron 1 of 5)	61428	NM_152414	27319	Hs.388788	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|Beta3a|CAGL85|TNRC20	basic helix-loop-helix family member e22	protein-coding
18.8606-3	chr2	159901482	159901981	+	0	NA	intron (NM_033394, intron 2 of 26)	AluSx|SINE|Alu	76585	NM_033394	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19.0309-3	chr4	83631172	83631671	+	0	NA	intron (NM_024906, intron 1 of 3)	MIR3|SINE|MIR	43162	NR_030301	693160		NR_030301	ENSG00000207746	MIR575	MIRN575|hsa-mir-575	microRNA 575	ncRNA
10.9963	chr18	4917755	4918254	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	279251	NM_001145194	642597	Hs.437160	NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
33.8091	chr21	45937124	45937623	+	0	NA	TTS (NR_103707)	TTS (NR_103707)	275	NR_026548	114043	Hs.592163	NM_153204		TSPEAR-AS2	C21orf90	TSPEAR antisense RNA 2	ncRNA
14.5842-2	chr4	36114994	36115493	+	0	NA	intron (NM_015230, intron 26 of 32)	intron (NM_015230, intron 26 of 32)	-130495	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
11.7457-4	chr9	118017024	118017523	+	0	NA	intron (NM_017418, intron 2 of 7)	intron (NM_017418, intron 2 of 7)	113176	NM_017418	50514	Hs.148841	NM_017418	ENSG00000173077	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
52.2475-2	chr11	19759560	19760059	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	21820	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
40.9313	chr21	34216936	34217435	+	0	NA	Intergenic	Intergenic	-31132	NM_001162495	56245	Hs.517235	NM_019596	ENSG00000205929	C21orf62	B37|C21orf120|PRED81	chromosome 21 open reading frame 62	protein-coding
24.034-2	chr7	69272556	69273055	+	0	NA	intron (NM_015570, intron 1 of 18)	MLT1F1|LTR|ERVL-MaLR	208900	NM_001127232	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
18.2102-2	chr14	38140131	38140630	+	0	NA	intron (NM_001310135, intron 3 of 32)	MLT1F|LTR|ERVL-MaLR	75976	NM_001310135	319089	Hs.659936	NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
15.2871	chr6	96827170	96827669	+	0	NA	Intergenic	Intergenic	-142283	NM_015323	23376	Hs.149367	NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
13.4199-4	chr1	11508824	11509323	+	0	NA	Intergenic	Intergenic	-30222	NM_020780	57540	Hs.202355	NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
20.3716	chr11	76315168	76316028	+	0	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	65446	NM_005512	2615	Hs.151641	NM_005512	ENSG00000137507	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
16.3827-4	chr2	69395885	69396384	+	0	NA	intron (NM_053034, intron 13 of 14)	intron (NM_053034, intron 13 of 14)	65320	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
30.4769	chr3	63761260	63761759	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-43532	NR_026866	132200	Hs.506386	NM_138808	ENSG00000163632	C3orf49	-	chromosome 3 open reading frame 49	ncRNA
10.4721	chr5	38466290	38466789	+	0	NA	TTS (NM_182798)	TTS (NM_182798)	20961	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
18.1531-4	chr19	8106441	8106940	+	0	NA	Intergenic	Intergenic	-10956	NM_001201359	6370	Hs.310511	NM_005624	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	C-C motif chemokine ligand 25	protein-coding
14.034	chrX	49742188	49742687	+	0	NA	intron (NM_001127899, intron 3 of 14)	intron (NM_001127899, intron 3 of 14)	-25317	NR_030241	693124		NR_030241	ENSG00000207758	MIR532	MIRN532|hsa-mir-532|mir-532	microRNA 532	ncRNA
35.0169-2	chr3	175657967	175658466	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-164095	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
10.2319-2	chr2	134997581	134998080	+	0	NA	Intergenic	Intergenic	-14000	NM_002410	4249	Hs.4988	NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
10.5012	chr8	81109263	81109762	+	0	NA	Intergenic	Intergenic	-25618	NM_005079	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
12.3433	chr4	166755223	166755722	+	0	NA	Intergenic	Intergenic	-38938	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
30.0349-2	chr5	102904877	102905376	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-6624	NM_001300741	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding
12.9757	chr8	95239228	95239727	+	0	NA	Intergenic	Intergenic	-9946	NM_001144663	1015	Hs.591853	NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
25.8336	chr3	13577409	13577908	+	0	NA	Intergenic	Intergenic	-12967	NM_001998	2199	Hs.198862	NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
27.9317-3	chr7	35395430	35395929	+	0	NA	intron (NR_038864, intron 2 of 2)	intron (NR_038864, intron 2 of 2)	42213	NR_038864	401324	Hs.377034	NR_038864		LOC401324	-	uncharacterized LOC401324	ncRNA
20.9691-2	chr1	203610105	203610604	+	0	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	14439	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
21.5927	chr5	55184068	55184567	+	0	NA	intron (NM_001242639, intron 6 of 15)	intron (NM_001242639, intron 6 of 15)	35167	NM_001242636	133396	Hs.55378	NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R	interleukin 31 receptor A	protein-coding
19.9568-6	chr11	60839574	60840073	+	0	NA	Intergenic	Intergenic	-21612	NM_001346456	921	Hs.58685	NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
22.161	chr7	13757264	13757763	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	268626	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
16.1798-7	chr2	7098934	7099433	+	0	NA	intron (NM_014746, intron 2 of 8)	intron (NM_014746, intron 2 of 8)	-40370	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	ncRNA
12.8651	chr5	133223894	133224393	+	0	NA	Intergenic	Intergenic	-25225	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
20.4866-2	chr20	4201941	4202440	+	0	NA	exon (NM_000678, exon 2 of 2)	exon (NM_000678, exon 2 of 2)	27469	NM_000678	146	Hs.557	NM_000678	ENSG00000171873	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
23.7059	chr2	104474567	104475066	+	0	NA	Intergenic	Intergenic	549974	NR_037885	100287010	Hs.694603	NR_037885		LOC100287010	-	uncharacterized LOC100287010	ncRNA
11.5552	chr11	99254317	99254816	+	0	NA	intron (NM_014361, intron 2 of 24)	intron (NM_014361, intron 2 of 24)	-172310	NM_175566	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
17.9588	chr4	8280540	8281039	+	0	NA	intron (NM_053044, intron 1 of 8)	intron (NM_053044, intron 1 of 8)	9297	NM_001297559	94031	Hs.479119	NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
15.6384	chr2	43981405	43981904	+	0	NA	intron (NM_172069, intron 25 of 29)	MLT1J|LTR|ERVL-MaLR	-19524	NM_015522	51626	Hs.371597	NM_015522	ENSG00000138036	DYNC2LI1	CGI-60|D2LIC|LIC3|SRTD15	dynein cytoplasmic 2 light intermediate chain 1	protein-coding
23.0892-2	chr12	117407615	117408114	+	0	NA	intron (NM_153348, intron 5 of 10)	intron (NM_153348, intron 5 of 10)	17278	NR_103809	100506551	Hs.657861	NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
23.1426-2	chrX	38496587	38497086	+	0	NA	intron (NM_004615, intron 1 of 7)	intron (NM_004615, intron 1 of 7)	76105	NM_004615	7102	Hs.441664	NM_004615	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b	tetraspanin 7	protein-coding
15.0724	chr16	64662125	64662624	+	0	NA	Intergenic	L1PBa|LINE|L1	493666	NM_001308392	1009	Hs.116471	NM_001797	ENSG00000140937	CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11	protein-coding
10.942	chr7	1021856	1022355	+	0	NA	promoter-TSS (NM_017781)	promoter-TSS (NM_017781)	-730	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
23.5853-4	chr2	231756144	231756643	+	0	NA	intron (NR_038238, intron 1 of 3)	intron (NR_038238, intron 1 of 3)	5132	NR_038238	151484	Hs.559309	NR_038238	ENSG00000232520	LOC151484	-	uncharacterized LOC151484	ncRNA
19.2812-3	chr1	6119965	6120464	+	0	NA	intron (NM_001199862, intron 2 of 15)	intron (NM_001199862, intron 2 of 15)	14040	NM_001199863	8514	Hs.440497	NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
14.3771	chr17	30152982	30153481	+	0	NA	Intergenic	Intergenic	32862	NM_001330176	55352	Hs.462729	NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
16.073	chr12	44802082	44802581	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	467113	NM_001145109	4753	Hs.505326	NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
26.2893-2	chr2	98758881	98759380	+	0	NA	intron (NR_144296, intron 7 of 28)	L4|LINE|RTE	-6828	NM_001345864	200403	Hs.269977	NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
36.8825	chr5	22652151	22652650	+	0	NA	intron (NM_004061, intron 1 of 14)	intron (NM_004061, intron 1 of 14)	201331	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
30.8884	chr1	64768434	64768933	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	99382	NM_152489	148581	Hs.388746	NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U (putative)	protein-coding
17.8252	chr12	1944931	1945430	+	0	NA	3' UTR (NM_001163925, exon 5 of 5)	3' UTR (NM_001163925, exon 5 of 5)	15747	NM_001039029	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
14.0894-2	chr16	77310666	77311165	+	0	NA	Intergenic	Intergenic	77566	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
12.4413-2	chr5	134902279	134902778	+	0	NA	Intergenic	Intergenic	12441	NM_004887	9547	Hs.483444	NM_004887	ENSG00000145824	CXCL14	BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14	C-X-C motif chemokine ligand 14	protein-coding
12.2621	chr6	112013860	112014359	+	0	NA	intron (NM_002037, intron 12 of 13)	intron (NM_002037, intron 12 of 13)	27156	NM_153047	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
32.1968-2	chr17	29842124	29842623	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-19528	NR_039877	100616248		NR_039877	ENSG00000131242	MIR4724	mir-4724	microRNA 4724	ncRNA
14.034-2	chr15	88761864	88762363	+	0	NA	intron (NM_001007156, intron 3 of 15)	intron (NM_001007156, intron 3 of 15)	-12908	NM_001320135	4916	Hs.185701	NM_002530	ENSG00000140538	NTRK3	GP145-TrkC|TRKC|gp145(trkC)	neurotrophic receptor tyrosine kinase 3	protein-coding
11.549-3	chr1	77267228	77267727	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-65616	NM_001320274	81849	Hs.149201	NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
18.3863-4	chr20	19899492	19899991	+	0	NA	intron (NM_001242581, intron 2 of 11)	intron (NM_001242581, intron 2 of 11)	29531	NM_018993	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
10.2411-2	chr6	88466513	88467012	+	0	NA	Intergenic	MIRc|SINE|MIR	-27816	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
17.9588-3	chr13	95146237	95146736	+	0	NA	intron (NM_001322183, intron 1 of 7)	intron (NM_001322183, intron 1 of 7)	-14550	NM_001129889	1638	Hs.301865	NM_001922	ENSG00000080166	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
17.167-3	chr20	46586637	46587136	+	0	NA	Intergenic	Intergenic	-25084	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
10.1368	chr7	151716975	151717474	+	0	NA	TTS (NM_145292)	TTS (NM_145292)	-5535	NM_022087	63917	Hs.647109	NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
12.6761	chr20	60515561	60516060	+	0	NA	TTS (NM_001794)	TTS (NM_001794)	12908	NR_031658	100302168		NR_031658	ENSG00000130699	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
10.013-2	chr11	126498909	126499408	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-23515	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
10.5012-2	chr13	62057251	62057750	+	0	NA	Intergenic	Intergenic	-55421	NR_134946	101926951	Hs.732367	NR_134946	ENSG00000279797	LOC101926951	-	uncharacterized LOC101926951	ncRNA
15.6384-2	chr2	126737340	126737839	+	0	NA	Intergenic	Intergenic	-675922	NM_001256584	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
41.4206-2	chrX	13826326	13826825	+	0	NA	intron (NM_001001996, intron 1 of 7)	MIRb|SINE|MIR	8903	NM_001001995	2824	Hs.495710	NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
11.1748	chr10	58364724	58365223	+	0	NA	Intergenic	LTR1|LTR|ERV1	-243939	NM_007057	11130	Hs.591363	NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
14.1794	chr1	224835266	224835765	+	0	NA	intron (NR_136287, intron 1 of 4)	intron (NR_136287, intron 1 of 4)	31336	NM_001322305	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
40.942	chr6	82778401	82778900	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	178821	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
23.3161	chr2	213002901	213003400	+	0	NA	intron (NM_005235, intron 1 of 27)	MSTC|LTR|ERVL-MaLR	287934	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
19.2812	chr7	32065281	32065780	+	0	NA	intron (NM_001322059, intron 3 of 17)	intron (NM_001322059, intron 3 of 17)	44944	NM_001191057	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
27.0553	chr11	31658478	31658977	+	0	NA	intron (NM_001288725, intron 7 of 10)	intron (NM_001288725, intron 7 of 10)	127451	NM_001288726	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4	elongator acetyltransferase complex subunit 4	protein-coding
17.0333	chr1	117560204	117560703	+	0	NA	intron (NM_001256109, intron 5 of 9)	intron (NM_001256109, intron 5 of 9)	16081	NM_001256111	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
13.3724	chr5	149998157	149998656	+	0	NA	intron (NM_001166209, intron 2 of 2)	intron (NM_001166209, intron 2 of 2)	1200	NM_001166209	11346	Hs.435228	NM_007286	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
18.0134	chr10	79092003	79092502	+	0	NA	intron (NM_001322838, intron 1 of 29)	intron (NM_001322838, intron 1 of 29)	18267	NM_001322838	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
13.4199-2	chr17	55662971	55663470	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	22553	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
58.2974	chr13	66953019	66953518	+	0	NA	intron (NM_001318372, intron 4 of 4)	intron (NM_001318372, intron 4 of 4)	160886	NR_039853	100616205		NR_039853	ENSG00000263561	MIR4704	-	microRNA 4704	ncRNA
11.6622	chr2	2594871	2595370	+	0	NA	Intergenic	L1M1|LINE|L1	-260035	NM_015025	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
19.2812-4	chr10	62171059	62171558	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-21566	NM_020987	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
29.1721-3	chr1	159897736	159898235	+	0	NA	exon (NM_020789, exon 19 of 21)	exon (NM_020789, exon 19 of 21)	-2653	NM_003564	8407	Hs.517168	NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
28.3565	chr6	101744054	101744553	+	0	NA	Intergenic	Intergenic	-102558	NM_001166247	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
18.8941	chr8	63515786	63516285	+	0	NA	intron (NR_130764, intron 3 of 6)	intron (NR_130764, intron 3 of 6)	354534	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding
14.0012-4	chr11	129137435	129137934	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-75591	NM_001142685	9743	Hs.440379	NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
16.216	chr15	26639689	26640188	+	0	NA	Intergenic	Intergenic	234387	NM_001191321	2562	Hs.302352	NM_000814	ENSG00000166206	GABRB3	ECA5|EIEE43	gamma-aminobutyric acid type A receptor beta3 subunit	protein-coding
17.7728	chr1	244363892	244364391	+	0	NA	Intergenic	Intergenic	147634	NM_006352	10472	Hs.69997	NM_006352	ENSG00000179456	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19.9568-9	chr20	24851969	24852468	+	0	NA	Intergenic	Intergenic	-77648	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
10.2365	chr22	23450096	23450595	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	33896	NM_014433	27156	Hs.526920	NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
13.2514-2	chr5	134745152	134745651	+	0	NA	Intergenic	SVA_C|Other|Other	-9824	NM_004893	9555	Hs.420272	NM_004893	ENSG00000113648	H2AFY	H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2	H2A histone family member Y	protein-coding
11.0237	chr2	182543256	182543755	+	0	NA	exon (NM_002500, exon 2 of 2)	exon (NM_002500, exon 2 of 2)	1887	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
13.279	chr4	157515786	157516285	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	376511	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
11.1464-2	chr9	37562815	37563314	+	0	NA	intron (NM_012166, intron 1 of 10)	THE1D|LTR|ERVL-MaLR	13186	NM_012166	26267	Hs.709527	NM_012166	ENSG00000147912	FBXO10	FBX10|PRMT11	F-box protein 10	protein-coding
38.8941-2	chr2	85316900	85317399	+	0	NA	Intergenic	Intergenic	-43434	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
12.7737	chr8	1933331	1933830	+	0	NA	intron (NM_014867, intron 1 of 1)	intron (NM_014867, intron 1 of 1)	11536	NM_014867	9920	Hs.5333	NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
19.5468	chr17	20466334	20466833	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-16454	NM_001190790	256223	Hs.131916	NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15-like 2	protein-coding
32.7572	chr5	19855520	19856019	+	0	NA	intron (NM_001291956, intron 4 of 14)	intron (NM_001291956, intron 4 of 14)	30612	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
20.9366	chr8	130325904	130326403	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-72667	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
12.4718-4	chr5	54179171	54179670	+	0	NA	Intergenic	CpG	101994	NM_007036	11082	Hs.129944	NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
15.3611-2	chr12	113736673	113737172	+	0	NA	TTS (NM_001301214)	TTS (NM_001301214)	7594	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
21.6052	chr7	105234486	105234985	+	0	NA	Intergenic	Intergenic	-12759	NR_027068	100130771	Hs.719432	NR_027068	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	ncRNA
23.9686	chr14	39974232	39974731	+	0	NA	Intergenic	L1M2c|LINE|L1	-72777	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
25.9007	chr11	126229445	126229944	+	0	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	3905	NM_006278	6484	Hs.591947	NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
17.8516	chrX	12974203	12974702	+	0	NA	Intergenic	Intergenic	-13033	NR_030727	349408	Hs.685035	NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
11.0073-2	chr2	85673935	85674434	+	0	NA	Intergenic	Intergenic	28130	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
32.1681-2	chr7	148287501	148288000	+	0	NA	promoter-TSS (NM_145304)	promoter-TSS (NM_145304)	93	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
32.5493	chr8	49730664	49731609	+	0	NA	Intergenic	Intergenic	-83266	NM_001142857	79645	Hs.23245	NM_024593	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
12.1968-2	chr20	31223558	31224057	+	0	NA	intron (NM_182584, intron 4 of 4)	intron (NM_182584, intron 4 of 4)	15976	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding
42.0901	chr11	95074405	95074904	+	0	NA	Intergenic	Intergenic	-108949	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
26.2709	chr2	108145338	108146084	+	0	NA	Intergenic	LTR9|LTR|ERV1	-179730	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
15.7675-6	chr6	151432709	151433208	+	0	NA	Intergenic	Intergenic	116634	NR_125868	102723831	Hs.684425	NR_125868		LOC102723831	-	uncharacterized LOC102723831	ncRNA
17.5449	chr1	113794823	113795322	+	0	NA	Intergenic	L2|LINE|L2	-46197	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
10.752	chr7	122262708	122263207	+	0	NA	intron (NM_001009571, intron 4 of 27)	Tigger10|DNA|TcMar-Tigger	76251	NM_139175	168433	Hs.126730	NM_139175	ENSG00000188050	RNF133	-	ring finger protein 133	protein-coding
24.4733-4	chr3	127567986	127568675	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-26237	NM_001003794	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
28.0688	chr11	45011518	45012017	+	0	NA	Intergenic	MIR|SINE|MIR	16314	NR_026681	221122	Hs.551656	NR_026681	ENSG00000254654	LOC221122	-	uncharacterized LOC221122	ncRNA
15.2433-2	chr1	64475231	64475730	+	0	NA	intron (NM_001083592, intron 2 of 6)	intron (NM_001083592, intron 2 of 6)	102408	NR_110666	101927034	Hs.680824	NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
22.2548	chr8	134737349	134737848	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-41289	NR_134462	105375773	Hs.445172	NR_134462		LOC105375773	-	uncharacterized LOC105375773	ncRNA
15.817	chr2	150467675	150468174	+	0	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-23594	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria and homocystinuria, cblD type	protein-coding
27.9317-2	chr7	146679378	146679877	+	0	NA	intron (NM_014141, intron 3 of 23)	intron (NM_014141, intron 3 of 23)	115074	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
18.729-3	chr20	31162685	31163184	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	9941	NM_001256798	140688	Hs.516978	NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4 like	protein-coding
27.3283	chr6	19587695	19588194	+	0	NA	Intergenic	Intergenic	137892	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
10.2	chr17	21273744	21274243	+	0	NA	Intergenic	Intergenic	-5706	NM_021012	3768	Hs.200629	NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium voltage-gated channel subfamily J member 12	protein-coding
16.3264	chr2	234246016	234246515	+	0	NA	intron (NM_000541, intron 11 of 15)	intron (NM_000541, intron 11 of 15)	-16888	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
17.122-8	chr20	48744538	48745037	+	0	NA	intron (NR_027889, intron 5 of 6)	intron (NR_027889, intron 5 of 6)	-12291	NM_199144	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
13.0452	chr1	114751207	114751706	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-54984	NM_001270805	148281	Hs.370963	NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
10.8991-3	chr16	50318053	50318552	+	0	NA	intron (NM_001286057, intron 1 of 18)	intron (NM_001286057, intron 1 of 18)	-3521	NM_001114	113	Hs.513578	NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
52.2988	chr1	241540169	241540668	+	0	NA	Intergenic	Intergenic	-19888	NM_001282775	6000	Hs.655739	NM_002924	ENSG00000182901	RGS7	-	regulator of G-protein signaling 7	protein-coding
12.1467	chr18	59198322	59198821	+	0	NA	intron (NM_031891, intron 7 of 11)	intron (NM_031891, intron 7 of 11)	197756	NM_031891	28316	Hs.671510	NM_031891	ENSG00000101542	CDH20	CDH7L3|Cdh7	cadherin 20	protein-coding
81.4267	chr12	128207808	128208307	+	0	NA	Intergenic	Intergenic	-67924	NR_134995	105370068	Hs.524845	NR_134995		LOC105370068	-	uncharacterized LOC105370068	ncRNA
12.84-2	chr1	242153247	242153746	+	0	NA	Intergenic	Intergenic	8889	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
23.1247	chr15	101998972	101999471	+	0	NA	intron (NM_138322, intron 2 of 10)	intron (NM_138322, intron 2 of 10)	30966	NM_138323	5046	Hs.498494	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
18.2391-2	chr8	73494283	73494782	+	0	NA	intron (NM_004770, intron 2 of 2)	MER70A|LTR|ERVL	44906	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
26.6354-2	chrX	10201177	10201676	+	0	NA	intron (NM_001830, intron 12 of 12)	MLT1J2|LTR|ERVL-MaLR	76441	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
18.5387	chr2	179131052	179131551	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	-53670	NM_145739	114880	Hs.318775	NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
20.1011	chr4	75658952	75659451	+	0	NA	Intergenic	LTR33B|LTR|ERVL	60695	NM_001729	685	Hs.591704	NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
27.7728	chr1	109498421	109498920	+	0	NA	intron (NM_015127, intron 1 of 11)	MLT2B3|LTR|ERVL	-5600	NM_001278202	23155	Hs.658489	NM_015127	ENSG00000121940	CLCC1	MCLC	chloride channel CLIC like 1	protein-coding
16.9037-3	chr9	137682726	137683225	+	0	NA	intron (NM_001278074, intron 32 of 65)	intron (NM_001278074, intron 32 of 65)	58240	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
12.4185	chr3	138465952	138466451	+	0	NA	intron (NM_006219, intron 2 of 21)	Tigger2b_Pri|DNA|TcMar-Tigger	12000	NM_006219	5291	Hs.239818	NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
24.4733-3	chr2	20822840	20823339	+	0	NA	intron (NM_022460, intron 6 of 6)	MIRb|SINE|MIR	27775	NM_022460	64342	Hs.531785	NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
14.3771-4	chr2	50639016	50639515	+	0	NA	intron (NM_001135659, intron 18 of 23)	SVA_B|Other|Other	-64371	NM_138735	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
30.5899	chr12	1157310	1157809	+	0	NA	intron (NR_027949, intron 2 of 15)	intron (NR_027949, intron 2 of 15)	20645	NM_001301248	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
12.1183-2	chr5	167886274	167886773	+	0	NA	intron (NM_015238, intron 19 of 22)	MIRb|SINE|MIR	-26940	NM_002887	5917	Hs.654907	NM_002887	ENSG00000113643	RARS	ArgRS|DALRD1|HLD9	arginyl-tRNA synthetase	protein-coding
13.439-3	chr5	36202548	36203047	+	0	NA	intron (NM_001287341, intron 9 of 12)	MLT1J2|LTR|ERVL-MaLR	38696	NM_001287340	133686	Hs.81907	NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
11.2668-4	chr3	151953648	151954147	+	0	NA	Intergenic	Intergenic	-30679	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
21.1691	chr5	97700779	97701278	+	0	NA	Intergenic	Intergenic	-403971	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule family member b	protein-coding
12.6122	chr3	136602757	136603256	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	21956	NM_006153	4690	Hs.126889	NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
16.3827	chr1	237398315	237398814	+	0	NA	intron (NM_001035, intron 1 of 104)	intron (NM_001035, intron 1 of 104)	192862	NM_001035	6262	Hs.109514	NM_001035	ENSG00000198626	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2	protein-coding
24.2481	chr17	18893634	18894133	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	14177	NM_001039999	644815	Hs.710727	NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
39.0658	chr5	37886245	37886744	+	0	NA	Intergenic	Intergenic	12967	NM_001278094	100861519	Hs.536820	NM_001278094	ENSG00000248587	GDNF-AS1	GDNFOS	GDNF antisense RNA 1 (head to head)	protein-coding
14.2136	chr22	21643513	21644012	+	0	NA	intron (NR_024583, intron 3 of 6)	intron (NR_024583, intron 3 of 6)	6976	NR_136575	102724728	Hs.735161	NR_136575		LOC102724728	-	POM121 transmembrane nucleoporin pseudogene	pseudo
11.1976	chr13	26802155	26802654	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-5896	NM_005977	6049	Hs.136885	NM_005977	ENSG00000127870	RNF6	-	ring finger protein 6	protein-coding
19.4692-2	chr7	146067159	146067658	+	0	NA	intron (NM_014141, intron 1 of 23)	AluSz|SINE|Alu	253955	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
11.9314-2	chr7	25010858	25011552	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	8626	NM_015550	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
16.038-3	chr16	85327509	85328008	+	0	NA	Intergenic	Intergenic	11194	NR_038859	197196	Hs.679002	NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
19.4692-6	chr20	24222058	24222557	+	0	NA	Intergenic	L1PA13|LINE|L1	41904	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
13.9147-2	chr11	82420202	82420701	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	24455	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
10.1682	chr11	98282489	98282988	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-608968	NM_001243271	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
10.1773	chr4	132852325	132852824	+	0	NA	Intergenic	L1PA13|LINE|L1	166581	NR_125883	101927305	Hs.507924	NR_125883		LOC101927305	-	uncharacterized LOC101927305	ncRNA
29.7062	chr2	222253565	222254064	+	0	NA	Intergenic	Intergenic	183264	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
11.986	chr20	10309966	10310465	+	0	NA	Intergenic	Intergenic	102358	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
29.6257-2	chr12	101632062	101632561	+	0	NA	Intergenic	L1ME3A|LINE|L1	-28295	NM_145913	160728	Hs.444536	NM_145913	ENSG00000256870	SLC5A8	AIT|SMCT|SMCT1	solute carrier family 5 member 8	protein-coding
28.4466	chr7	149576614	149577113	+	0	NA	non-coding (NR_110612, exon 5 of 5)	non-coding (NR_110612, exon 5 of 5)	-5912	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
22.3136	chr14	89703008	89703507	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	180197	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
37.7989	chr20	34474422	34474921	+	0	NA	intron (NM_016436, intron 9 of 17)	intron (NM_016436, intron 9 of 17)	67877	NM_033630	51282	Hs.584909	NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
17.2354-2	chr8	58982466	58982965	+	0	NA	intron (NM_147189, intron 3 of 4)	intron (NM_147189, intron 3 of 4)	75602	NM_147189	90362	Hs.154652	NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
22.2475-2	chr11	66633833	66634332	+	0	NA	intron (NM_001040716, intron 10 of 22)	intron (NM_001040716, intron 10 of 22)	9206	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
13.0627	chr3	78543732	78544231	+	0	NA	Intergenic	Intergenic	524628	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding
24.5469	chr6	33662061	33662560	+	0	NA	intron (NM_002224, intron 56 of 57)	intron (NM_002224, intron 56 of 57)	-3595	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
12.993-3	chr3	34688491	34688990	+	0	NA	Intergenic	AluJr|SINE|Alu	746775	NR_110817	101928135	Hs.550715	NR_110817		LOC101928135	-	uncharacterized LOC101928135	ncRNA
13.8195-5	chr6	31850103	31850602	+	0	NA	intron (NM_025256, intron 24 of 26).5	intron (NM_025256, intron 24 of 26).5	-3529	NM_001178044	80736	Hs.335355	NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|NG22|TPPT	solute carrier family 44 member 4	protein-coding
36.216	chr13	105614759	105615258	+	0	NA	Intergenic	Intergenic	-503208	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
15.6384-5	chr4	183579793	183580292	+	0	NA	intron (NM_001080477, intron 6 of 27)	MLT1G3|LTR|ERVL-MaLR	258588	NM_001921	1635	Hs.183850	NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
17.4473-3	chr5	9898392	9898891	+	0	NA	intron (NR_027112, intron 2 of 12)	LTR82B|LTR|ERVL	5295	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LINC02112	-	long intergenic non-protein coding RNA 2112	ncRNA
15.7025	chr21	45440564	45441063	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	8607	NM_003274	7109	Hs.126221	NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
15.0307	chr9	112723507	112724006	+	0	NA	intron (NM_147150, intron 6 of 9)	intron (NM_147150, intron 6 of 9)	-87122	NM_001198656	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding
12.0971	chr16	88839216	88839715	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	12163	NM_001142864	9780	Hs.377001	NM_001142864	ENSG00000103335	PIEZO1	DHS|FAM38A|LMPH3|Mib	piezo type mechanosensitive ion channel component 1	protein-coding
15.9688-2	chr4	89504803	89505302	+	0	NA	Intergenic	7SK|RNA|RNA	-8522	NM_014606	8916	Hs.35804	NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
11.2552	chr9	3205549	3206048	+	0	NA	Intergenic	Intergenic	24209	NR_121585	101929247	Hs.547178	NR_121585		LINC01231	-	long intergenic non-protein coding RNA 1231	ncRNA
17.4958-2	chr12	120801230	120801729	+	0	NA	intron (NM_002442, intron 5 of 14)	intron (NM_002442, intron 5 of 14)	5504	NM_002442	4440	Hs.158311	NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
10.6198	chr1	183324878	183325377	+	0	NA	intron (NM_015039, intron 1 of 10)	intron (NM_015039, intron 1 of 10)	-51118	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
12.7737-2	chr5	14741229	14741728	+	0	NA	intron (NM_054027, intron 8 of 11)	L2b|LINE|L2	28675	NR_046285	100130744	Hs.660550	NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
27.3283-2	chr9	137462046	137462545	+	0	NA	Intergenic	Intergenic	-71356	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	EDSC	collagen type V alpha 1 chain	protein-coding
16.4397	chr1	170697072	170697571	+	0	NA	intron (NM_022716, intron 3 of 3)	intron (NM_022716, intron 3 of 3)	64008	NM_006902	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
13.0103-5	chr2	142486398	142486897	+	0	NA	intron (NM_018557, intron 2 of 90)	intron (NM_018557, intron 2 of 90)	402623	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
10.2549	chr12	49236638	49237137	+	0	NA	intron (NM_004818, intron 3 of 16)	SVA_D|Other|Other	9070	NM_004818	9416	Hs.130098	NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
15.1999	chr10	118458797	118459296	+	0	NA	intron (NM_001330164, intron 5 of 12)	intron (NM_001330164, intron 5 of 12)	-29263	NM_001330142	143379	Hs.121347	NM_144661	ENSG00000165863	C10orf82	-	chromosome 10 open reading frame 82	protein-coding
14.0561-2	chr7	46299828	46300327	+	0	NA	Intergenic	Intergenic	-339206	NM_001013398	3486	Hs.450230	NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP3	insulin like growth factor binding protein 3	protein-coding
18.2391	chr19	19391310	19391809	+	0	NA	intron (NM_172231, intron 8 of 13)	intron (NM_172231, intron 8 of 13)	-7485	NM_001001524	53345	Hs.531624	NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
13.6351	chr17	72956718	72957217	+	0	NA	intron (NM_030630, intron 6 of 18)	intron (NM_030630, intron 6 of 18)	-9817	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
17.1897-2	chrX	9856196	9856695	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-23967	NM_001320664	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
10.6148-3	chr5	167894963	167895462	+	0	NA	intron (NM_015238, intron 22 of 22)	intron (NM_015238, intron 22 of 22)	-18251	NM_002887	5917	Hs.654907	NM_002887	ENSG00000113643	RARS	ArgRS|DALRD1|HLD9	arginyl-tRNA synthetase	protein-coding
12.2915-6	chr3	128653686	128654185	+	0	NA	Intergenic	Intergenic	55602	NM_014049	28976	Hs.567482	NM_014049	ENSG00000177646	ACAD9	NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
12.4185-2	chr20	10374900	10375399	+	0	NA	Intergenic	SVA_C|Other|Other	37424	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
21.4086	chr9	82080039	82080538	+	0	NA	Intergenic	Intergenic	-106400	NR_104239	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
12.6122-4	chr5	137181135	137181634	+	0	NA	Intergenic	Intergenic	-22161	NM_001300911	9499	Hs.84665	NM_006790	ENSG00000120729	MYOT	LGMD1|LGMD1A|MFM3|TTID|TTOD	myotilin	protein-coding
18.6328	chr5	1339418	1339917	+	0	NA	intron (NM_030782, intron 3 of 16)	CpG	5518	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
36.3827	chr6	166891481	166891980	+	0	NA	intron (NM_001318937, intron 8 of 18)	intron (NM_001318937, intron 8 of 18)	-12859	NR_046793	100874353	Hs.675698	NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
21.9382-2	chr1	108770331	108770830	+	0	NA	intron (NM_001143989, intron 13 of 14)	intron (NM_001143989, intron 13 of 14)	16123	NM_001143989	148545	Hs.511849	NM_152488	ENSG00000196427	NBPF4	-	neuroblastoma breakpoint family member 4	protein-coding
16.2893	chr11	32162266	32162765	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	2943	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
15.8336-2	chr10	122357810	122358309	+	0	NA	non-coding (NR_103717, exon 1 of 1)	non-coding (NR_103717, exon 1 of 1)	598	NR_103717	404216	Hs.196578	NM_001012711	ENSG00000177234	LINC01561	C10orf85	long intergenic non-protein coding RNA 1561	ncRNA
19.0309	chr2	171318912	171319591	+	0	NA	intron (NM_001083615, intron 23 of 33)	intron (NM_001083615, intron 23 of 33)	-111798	NR_110576	101929753	Hs.534101	NR_110576		LOC101929753	-	uncharacterized LOC101929753	ncRNA
11.8111	chr1	116810734	116811233	+	0	NA	Intergenic	Intergenic	-104812	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
21.6115	chr16	77490832	77491331	+	0	NA	Intergenic	Intergenic	-22070	NM_001326358	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding
10.4096-2	chr11	60637670	60638169	+	0	NA	exon (NM_207341, exon 4 of 12)	exon (NM_207341, exon 4 of 12)	2904	NM_207341	22917	Hs.172130	NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1	zona pellucida glycoprotein 1	protein-coding
31.6813	chr20	15740750	15741249	+	0	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	162960	NR_130925	613266	Hs.309149	NR_130924		LOC613266	-	uncharacterized LOC613266	ncRNA
15.6384-4	chr6	22098645	22099144	+	0	NA	intron (NR_015410, intron 8 of 11)	L2a|LINE|L2	48528	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
12.7327	chr8	1923952	1924451	+	0	NA	non-coding (NR_126346, exon 3 of 3)	non-coding (NR_126346, exon 3 of 3)	2157	NM_014867	9920	Hs.5333	NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
17.7211	chr8	58038060	58038559	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-92526	NR_038235	100507651	Hs.371831	NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
16.1798-3	chr7	148134011	148134510	+	0	NA	Intergenic	LTR1|LTR|ERV1	-153397	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
94.828	chr14	23184401	23184900	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-51081	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	OXA1L, mitochondrial inner membrane protein	protein-coding
23.9686-2	chr3	70565168	70565667	+	0	NA	Intergenic	Intergenic	516522	NR_110000	101927152	Hs.382046	NR_110000	ENSG00000240405	SAMMSON	LINC01212	survival associated mitochondrial melanoma specific oncogenic non-coding RNA	ncRNA
28.9963-2	chr2	22242963	22243462	+	0	NA	Intergenic	Intergenic	-309688	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
13.8934	chr22	36980646	36981145	+	0	NA	intron (NM_006078, intron 2 of 3)	intron (NM_006078, intron 2 of 3)	-55618	NM_003753	8664	Hs.55682	NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
52.3359	chr1	246581570	246582069	+	0	NA	intron (NM_001167740, intron 1 of 11)	LTR1|LTR|ERV1	-1105	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
66.5758	chr5	53965979	53966478	+	0	NA	intron (NR_104658, intron 1 of 2)	LTR88a|LTR|Gypsy?	32924	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
14.9485-4	chr16	75320773	75321272	+	0	NA	Intergenic	MIRc|SINE|MIR	-19071	NM_001170715	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
21.2436	chr2	185992915	185993414	+	0	NA	Intergenic	MER70A|LTR|ERVL	38635	NR_136319	105373782	Hs.128285	NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
14.0012-5	chr2	130081056	130081555	+	0	NA	Intergenic	Intergenic	-49841	NR_122041	151121	Hs.531687	NM_001033657	ENSG00000204460	LINC01854	-	long intergenic non-protein coding RNA 1854	ncRNA
16.0555-2	chr2	194848876	194849375	+	0	NA	Intergenic	Intergenic	-359868	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
17.3283	chr4	166705757	166706256	+	0	NA	Intergenic	Intergenic	-41783	NR_121677	101928131	Hs.406479	NR_121677		LOC101928131	-	uncharacterized LOC101928131	ncRNA
26.5758-2	chr3	106059843	106060342	+	0	NA	Intergenic	Intergenic	-471826	NM_001321790	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
34.4129	chr8	67052888	67053387	+	0	NA	intron (NM_184087, intron 4 of 4)	intron (NM_184087, intron 4 of 4)	13859	NM_033058	84675	Hs.85524	NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
11.5927	chr16	27780905	27781404	+	0	NA	intron (NM_015202, intron 20 of 27)	intron (NM_015202, intron 20 of 27)	118324	NM_144675	146395	Hs.91910	NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
12.3582-2	chr9	131151928	131152427	+	0	NA	non-coding (NR_049743, exon 5 of 5)	non-coding (NR_049743, exon 5 of 5)	-2723	NR_039815	100616335		NR_039815	ENSG00000283335	MIR219B	MIR2964A|hsa-mir-219b|mir-219b	microRNA 219b	ncRNA
18.6967-2	chr1	11419000	11419499	+	0	NA	Intergenic	Intergenic	85994	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
11.3608-2	chr2	26872165	26872664	+	0	NA	Intergenic	MIRc|SINE|MIR	-8178	NM_001029881	130106	Hs.591579	NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
36.6154	chr2	224732680	224733179	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-30610	NR_110905	130340	Hs.632555	NM_178814	ENSG00000152056	AP1S3	PSORS15	adaptor related protein complex 1 sigma 3 subunit	protein-coding
18.3268-4	chr20	48889169	48889668	+	0	NA	intron (NM_001278655, intron 1 of 3)	intron (NM_001278655, intron 1 of 3)	5395	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
15.6543	chr12	90654986	90655485	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-31860	NR_135018	105369893	Hs.577777	NR_135018		LOC105369893	-	uncharacterized LOC105369893	ncRNA
11.3136-2	chr19	18762285	18762784	+	0	NA	intron (NM_001345983, intron 1 of 2)	intron (NM_001345983, intron 1 of 2)	7086	NM_001345983	55295	Hs.250632	NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
17.6955	chr3	153854758	153855257	+	0	NA	intron (NM_015595, intron 4 of 14)	MSTC|LTR|ERVL-MaLR	15858	NM_001251963	26084	Hs.240845	NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
17.167-2	chr3	174801901	174802400	+	0	NA	intron (NR_046390, intron 2 of 3)	MLT1H1|LTR|ERVL-MaLR	30882	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
14.023	chr8	137499998	137500497	+	0	NA	Intergenic	Intergenic	925584	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
10.7469-3	chr12	104983682	104984181	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-1480	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
14.2251-4	chr2	19975057	19975556	+	0	NA	Intergenic	Intergenic	-93309	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
10.1909	chr1	212005180	212005679	+	0	NA	intron (NR_135818, intron 2 of 2)	intron (NR_135818, intron 2 of 2)	1126	NR_135820	102723727	Hs.147656	NR_135818	ENSG00000229258	LOC102723727	-	uncharacterized LOC102723727	ncRNA
17.3755	chr19	38121351	38121850	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	24713	NM_001320667	22835	Hs.716719	NM_014898	ENSG00000120784	ZFP30	ZNF745	ZFP30 zinc finger protein	protein-coding
13.7572	chr3	130587800	130588299	+	0	NA	intron (NM_001199182, intron 1 of 26)	SVA_E|Other|Other	18680	NM_001199182	27032	Hs.584884	NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
21.8111	chr13	31378499	31378998	+	0	NA	intron (NR_047012, intron 1 of 1)	intron (NR_047012, intron 1 of 1)	1405	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
14.8812-4	chr17_gl000205_random	25393	25892	+	0	NA	Intergenic	Intergenic	-90981	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
20.048	chr2	52752036	52752535	+	0	NA	Intergenic	LTR1D|LTR|ERV1	154499	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA
14.1005-2	chrX	108914828	108915327	+	0	NA	intron (NM_001318510, intron 9 of 15)	SVA_B|Other|Other	-46680	NM_012282	23630	Hs.522753	NM_012282	ENSG00000176076	KCNE5	KCNE1L	potassium voltage-gated channel subfamily E regulatory subunit 5	protein-coding
15.986	chr4	10834842	10835341	+	0	NA	Intergenic	Intergenic	-148705	NM_052964	116449	Hs.678910	NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
30.0349-3	chr3	37823823	37824322	+	0	NA	intron (NM_002207, intron 25 of 27)	intron (NM_002207, intron 25 of 27)	79199	NR_110531	101928153	Hs.657314	NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
12.8233	chr10	119017185	119017684	+	0	NA	intron (NM_003054, intron 10 of 15)	intron (NM_003054, intron 10 of 15)	16850	NM_003054	6571	Hs.596992	NM_003054	ENSG00000165646	SLC18A2	SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
15.4061	chr5	37816944	37817443	+	0	NA	intron (NM_199231, intron 2 of 2)	intron (NM_199231, intron 2 of 2)	17731	NM_001278098	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
11.6749-2	chr20	25542975	25543474	+	0	NA	intron (NM_025176, intron 1 of 23)	SVA_D|Other|Other	22943	NM_025176	22981	Hs.631508	NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding
26.073-2	chrUn_gl000247	3626	4125	+	0	NA	NA	L1PA7|LINE|L1	NA	NA								
33.7366	chr2	192087136	192087635	+	0	NA	Intergenic	LTR86B1|LTR|ERVL	-22617	NM_001330238	4430	Hs.439620	NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
12.0343-2	chr16	57550172	57550671	+	0	NA	intron (NM_033212, intron 6 of 8)	intron (NM_033212, intron 6 of 8)	20056	NM_033212	92922	Hs.644611	NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
19.431	chr2	19418570	19419069	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-129371	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
18.2681-3	chr3	183016533	183017032	+	0	NA	intron (NM_015078, intron 11 of 29)	intron (NM_015078, intron 11 of 29)	45750	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
14.3771-2	chr1	1056577	1057816	+	0	NA	Intergenic	Intergenic	-5460	NM_001330306	54991	Hs.235095	NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
18.3268-3	chr3	173030786	173031285	+	0	NA	Intergenic	Intergenic	-85203	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
33.7779-3	chr17	69781405	69781904	+	0	NA	Intergenic	Intergenic	240466	NR_110876	102723505	Hs.547482	NR_110876	ENSG00000228639	LINC02095	-	long intergenic non-protein coding RNA 2095	ncRNA
10.1368-2	chr3	9889881	9890380	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4428	NM_001142547	285367	Hs.33719	NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridylate synthase domain containing 3	protein-coding
21.0403-3	chr11	133476019	133476518	+	0	NA	Intergenic	Intergenic	-73761	NM_001319104	4978	Hs.4817	NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
11.0237-2	chr4	48188991	48189490	+	0	NA	intron (NM_003215, intron 2 of 17)	SVA_B|Other|Other	-52967	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
31.5181	chr12	125158527	125159207	+	0	NA	Intergenic	Intergenic	-106857	NM_006312	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
10.6148-4	chr1	48474572	48475071	+	0	NA	Intergenic	L3|LINE|CR1	-12259	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
26.4975-4	chr7	122736370	122736869	+	0	NA	Intergenic	Intergenic	-100865	NM_016945	50833	Hs.272395	NM_016945	ENSG00000128519	TAS2R16	T2R16	taste 2 receptor member 16	protein-coding
31.2901	chr7	92111015	92111514	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	34502	NR_052016	57798	Hs.21145	NM_021167	ENSG00000157259	GATAD1	CMD2B|ODAG|RG083M05.2	GATA zinc finger domain containing 1	protein-coding
24.7496	chr6	125589153	125589652	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	33880	NM_016063	51020	Hs.32826	NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
19.9568-7	chr2	50496080	50496579	+	0	NA	intron (NM_001135659, intron 18 of 23)	intron (NM_001135659, intron 18 of 23)	78563	NM_001330091	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
11.1126	chr6	13524954	13525453	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-37334	NM_001242629	54438	Hs.484686	NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
25.817	chr1	240156549	240157048	+	0	NA	Intergenic	Intergenic	-14026	NR_036695	645884	Hs.613280	NR_036695		RPS7P5	RPS7_2_183	ribosomal protein S7 pseudogene 5	pseudo
25.5752-3	chr6	15871434	15871933	+	0	NA	Intergenic	Intergenic	-208394	NM_032122	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
12.5806-2	chr2	23765445	23765944	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	157396	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
57.122	chr14	21069105	21069604	+	0	NA	intron (NR_122043, intron 3 of 4)	HERVL18-int|LTR|ERVL	-10372	NM_001024822	493901	Hs.729466	NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
20.1011-2	chr12	93566912	93567411	+	0	NA	promoter-TSS (NR_120492)	promoter-TSS (NR_120492)	-981	NR_120492	102724933	Hs.663947	NR_120492	ENSG00000258171	LOC102724933	-	uncharacterized LOC102724933	ncRNA
43.3819	chr20	53241539	53242038	+	0	NA	intron (NM_177959, intron 6 of 7)	intron (NM_177959, intron 6 of 7)	149531	NM_177959	55816	Hs.473133	NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
19.3181-2	chrX	46819759	46820258	+	0	NA	intron (NM_014735, intron 1 of 10)	intron (NM_014735, intron 1 of 10)	48140	NM_014735	9767	Hs.371977	NM_014735	ENSG00000102221	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
11.3906	chr16	58460815	58461314	+	0	NA	Intergenic	Intergenic	34766	NM_001126129	64785	Hs.47125	NM_022770	ENSG00000181938	GINS3	PSF3	GINS complex subunit 3	protein-coding
11.9314	chr14	105853874	105854373	+	0	NA	intron (NM_001100913, intron 19 of 24)	intron (NM_001100913, intron 19 of 24)	-10797	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
29.5078	chr2	168541201	168541700	+	0	NA	Intergenic	Intergenic	-133732	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	beta-1,3-galactosyltransferase 1	protein-coding
15.9007	chr15	65197565	65198064	+	0	NA	Intergenic	CpG	-6287	NM_182703	348094	Hs.207157	NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
10.2687	chr6	137407167	137407666	+	0	NA	Intergenic	Intergenic	-41099	NM_014432	53832	Hs.445868	NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
16.3264-2	chr3	13163567	13164066	+	0	NA	Intergenic	L2a|LINE|L2	-49199	NM_001134382	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
16.1798-6	chr4	140684310	140684809	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	97637	NM_001204367	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
11.3136	chr7	139913702	139914201	+	0	NA	Intergenic	Intergenic	36890	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
10.1278-5	chr8	21802059	21802558	+	0	NA	intron (NM_015024, intron 1 of 27)	SVA_B|Other|Other	25128	NM_015024	23039	Hs.172685	NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
15.4668-2	chr5	29478509	29479008	+	0	NA	Intergenic	MER61D|LTR|ERV1	-82675	NR_104628	101929681	Hs.549659	NR_104628		LINC02064	-	long intergenic non-protein coding RNA 2064	ncRNA
25.3018	chr3	20879284	20879783	+	0	NA	Intergenic	Intergenic	495573	NR_110814	101927829	Hs.639381	NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
19.9568-8	chr2	183493595	183494094	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-86924	NR_073367	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
23.5853	chr7	22539610	22540109	+	0	NA	promoter-TSS (NM_207342)	promoter-TSS (NM_207342)	42	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
14.3771-6	chr12	81848553	81849052	+	0	NA	intron (NM_003625, intron 5 of 32)	intron (NM_003625, intron 5 of 32)	57368	NM_001282536	8499	Hs.506216	NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding
16.8194	chr17	17920379	17920878	+	0	NA	TTS (NM_001130090)	TTS (NM_001130090)	21852	NM_145691	91647	Hs.528889	NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
10.9098-2	chr1	203810220	203810719	+	0	NA	intron (NM_001319238, intron 14 of 19)	SVA_B|Other|Other	-20244	NM_003094	6635	Hs.334612	NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
16.1798-2	chr11	15933130	15933629	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	57788	NR_106721	102464826		NR_106721	ENSG00000110693	MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
16.3827-6	chr2	97149756	97150255	+	0	NA	Intergenic	LTR16B|LTR|ERVL	21117	NM_001285485	93082	Hs.149219	NM_001080535	ENSG00000163121	NEURL3	LINCR	neuralized E3 ubiquitin protein ligase 3	protein-coding
13.7059-3	chr3	52049861	52050360	+	0	NA	Intergenic	Intergenic	-20152	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
23.5853-3	chr17	63546866	63547365	+	0	NA	intron (NM_004655, intron 2 of 10)	MIR|SINE|MIR	10625	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
10.4096	chr9	137837611	137838110	+	0	NA	Intergenic	Intergenic	-28011	NM_002003	2219	Hs.440898	NM_002003	ENSG00000085265	FCN1	FCNM	ficolin 1	protein-coding
20.6651-2	chr9	122440255	122440754	+	0	NA	Intergenic	Intergenic	-256834	NR_132393	106146149	Hs.638938	NR_132393	ENSG00000261432	LINC01613	n341773	long intergenic non-protein coding RNA 1613	ncRNA
11.549	chr13	77605918	77606417	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-4836	NM_012158	26224	Hs.508284	NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A	F-box and leucine rich repeat protein 3	protein-coding
10.1368-3	chr2	12145917	12146416	+	0	NA	Intergenic	Intergenic	-1076	NR_110197	100506457	Hs.197824	NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
23.2514	chr2	222041319	222041818	+	0	NA	Intergenic	Intergenic	395510	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
74.8812	chr5	10485155	10485654	+	0	NA	Intergenic	Intergenic	7255	NR_106747	102465138		NR_106747	ENSG00000277073	MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
15.0724-2	chr8	129799810	129800309	+	0	NA	Intergenic	Intergenic	-223134	NR_121673	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
27.5449-2	chr8	58191353	58191852	+	0	NA	promoter-TSS (NR_026772)	promoter-TSS (NR_026772)	-500	NR_026772	26138	Hs.159352	NM_015643	ENSG00000215117	LINC00588	C8orf71	long intergenic non-protein coding RNA 588	ncRNA
14.9485-8	chr4	37797363	37797862	+	0	NA	Intergenic	LTR56|LTR|ERV1	-30670	NM_018290	55276	Hs.23363	NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
13.0892	chr9	11458357	11458856	+	0	NA	Intergenic	Intergenic	845400	NR_110696	101929428	Hs.434446	NR_110696	ENSG00000226717	PTPRD-AS2	-	PTPRD antisense RNA 2 (head to head)	ncRNA
13.0892-2	chr1	165254545	165255044	+	0	NA	intron (NM_177398, intron 3 of 8)	intron (NM_177398, intron 3 of 8)	70684	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
36.5956	chr5	160827730	160828229	+	0	NA	intron (NM_021911, intron 6 of 10)	intron (NM_021911, intron 6 of 10)	147151	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding
12.7409	chr13	48637432	48637931	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-13592	NR_046511	100873965	Hs.616241	NR_046511	ENSG00000229111	MED4-AS1	MED4-AS	MED4 antisense RNA 1	ncRNA
31.2901-2	chr1	237145565	237146064	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	21904	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
18.8941-3	chr7	70089453	70089952	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-507821	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
14.8812-3	chr1	60456105	60456604	+	0	NA	exon (NM_152377, exon 12 of 12)	exon (NM_152377, exon 12 of 12)	-63884	NM_000775	1573	Hs.152096	NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
29.914	chr5	5490813	5491312	+	0	NA	TTS (NM_015325)	TTS (NM_015325)	68276	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
22.1753	chr2	10483718	10484630	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	13885	NM_001258357	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
13.0103-4	chr7	141029925	141030424	+	0	NA	intron (NM_001195278, intron 2 of 3)	L1PA10|LINE|L1	-220904	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
13.4199	chr5	160740979	160741478	+	0	NA	intron (NM_000813, intron 9 of 9)	intron (NM_000813, intron 9 of 9)	233902	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding
13.4582	chrX	10843332	10843831	+	0	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	8228	NM_033290	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
16.3639-3	chr6	6631677	6632176	+	0	NA	intron (NM_004271, intron 3 of 4)	MER58B|DNA|hAT-Charlie	-8867	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
85.4821	chr8	120119597	120120096	+	0	NA	3' UTR (NM_001324095, exon 8 of 8)	3' UTR (NM_001324095, exon 8 of 8)	-38825	NR_134297	101927513	Hs.676598	NR_134297	ENSG00000254278	LOC101927513	-	uncharacterized LOC101927513	ncRNA
17.1444	chr16	54536886	54537385	+	0	NA	Intergenic	Intergenic	-132524	NR_134923	100996345	Hs.112680	NR_134922	ENSG00000261803	LINC02140	-	long intergenic non-protein coding RNA 2140	ncRNA
28.5387	chr7	147283652	147284151	+	0	NA	intron (NM_014141, intron 12 of 23)	MER91A|DNA|hAT-Tip100	-84870	NR_133930	105375556	Hs.667432	NR_133929	ENSG00000230190	LOC105375556	-	uncharacterized LOC105375556	ncRNA
26.6555	chr3	139812621	139813120	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	158843	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
26.8613	chr12	59050344	59050843	+	0	NA	intron (NR_120452, intron 1 of 7)	MER52A|LTR|ERV1	65109	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
30.0349-5	chr3	193621697	193622196	+	0	NA	Intergenic	Intergenic	90081	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
15.4516-3	chr12	16225280	16225779	+	0	NA	Intergenic	Intergenic	161423	NM_015954	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
12.5571	chr7	107485269	107485768	+	0	NA	Intergenic	Intergenic	-41840	NM_000111	1811	Hs.1650	NM_000111	ENSG00000091138	SLC26A3	CLD|DRA	solute carrier family 26 member 3	protein-coding
14.7756	chr5	37518751	37519250	+	0	NA	intron (NM_001345998, intron 9 of 17)	SVA_A|Other|Other	139638	NM_001345998	55100	Hs.213690	NM_018034	ENSG00000082068	WDR70	-	WD repeat domain 70	protein-coding
30.6803	chr21	32870098	32870597	+	0	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	60943	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
21.4813-2	chr3	175528678	175529177	+	0	NA	Intergenic	Intergenic	-34806	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
16.038	chr1	112498302	112498801	+	0	NA	intron (NM_004980, intron 2 of 7)	MIR|SINE|MIR	33226	NM_004980	3752	Hs.666367	NM_004980	ENSG00000171385	KCND3	BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22	potassium voltage-gated channel subfamily D member 3	protein-coding
20.4964	chr18	54424139	54424638	+	0	NA	exon (NM_015285, exon 15 of 28)	exon (NM_015285, exon 15 of 28)	105772	NM_052834	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
23.4969-2	chr7	83081460	83081959	+	0	NA	intron (NM_001178129, intron 4 of 16)	intron (NM_001178129, intron 4 of 16)	189038	NM_001178129	9723	Hs.528721	NM_012431	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	semaphorin 3E	protein-coding
23.2148	chr1	96119058	96119557	+	0	NA	Intergenic	Intergenic	143635	NR_110622	100996635	Hs.639548	NR_110621	ENSG00000228971	LOC100996635	-	uncharacterized LOC100996635	ncRNA
33.3161	chr21	34506087	34506586	+	0	NA	Intergenic	Intergenic	-10330	NR_109961	101928107	Hs.382669	NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
10.2411	chr11	35653742	35654241	+	0	NA	Intergenic	Intergenic	14256	NM_014344	24147	Hs.39384	NM_014344	ENSG00000179431	FJX1	-	four jointed box 1	protein-coding
12.84	chr1	199244527	199245026	+	0	NA	Intergenic	L1MA9|LINE|L1	-256683	NR_110525	102800316	Hs.568480	NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
30.2182-2	chr2	148617515	148618014	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	15200	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
11.7263-2	chr3	122839247	122839746	+	0	NA	intron (NM_006810, intron 8 of 16)	L2|LINE|L2	-41145	NR_106960	102465667		NR_106960	ENSG00000065485	MIR7110	hsa-mir-7110	microRNA 7110	ncRNA
13.4199-3	chr2	139641563	139642062	+	0	NA	Intergenic	MER130|Unknown?|Unknown?	-13082	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
32.4033	chr21	28308214	28308713	+	0	NA	intron (NM_007038, intron 3 of 7)	intron (NM_007038, intron 3 of 7)	-17817	NR_039916	100616243		NR_039916	ENSG00000266133	MIR4759	-	microRNA 4759	ncRNA
14.437	chr2	127100673	127101172	+	0	NA	Intergenic	Intergenic	-312589	NM_001256584	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
35.0585	chr1	99974563	99975062	+	0	NA	Intergenic	SVA_B|Other|Other	-21452	NR_125951	101928270	Hs.576048	NR_125951	ENSG00000224445	LINC01708	-	long intergenic non-protein coding RNA 1708	ncRNA
13.279-5	chr18	60938309	60938808	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	48055	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
14.437-3	chr2	95967876	95968375	+	0	NA	intron (NM_013434, intron 1 of 8)	MER5B|DNA|hAT-Charlie	5053	NM_013434	30818	Hs.437376	NM_013434	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	potassium voltage-gated channel interacting protein 3	protein-coding
18.3863-2	chr13	67713013	67713512	+	0	NA	intron (NM_001318372, intron 2 of 4)	intron (NM_001318372, intron 2 of 4)	91206	NM_001318374	5101	Hs.654709	NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
47.2354	chr2	195197778	195198277	+	0	NA	Intergenic	Intergenic	-10966	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
49.7469	chr2	30581649	30582148	+	0	NA	Intergenic	Intergenic	12386	NR_122048	285043	Hs.429119	NR_122048		LOC285043	-	uncharacterized LOC285043	ncRNA
13.4199-5	chr1	1234282	1234781	+	0	NA	intron (NM_030649, intron 10 of 23)	intron (NM_030649, intron 10 of 23)	-2981	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
27.7211	chr2	67494465	67494964	+	0	NA	intron (NR_110564, intron 2 of 4)	intron (NR_110564, intron 2 of 4)	-52263	NR_038844	644838	Hs.145561	NR_038844	ENSG00000236780	LINC01829	-	long intergenic non-protein coding RNA 1829	ncRNA
17.3049	chr8	123772348	123772847	+	0	NA	Intergenic	Intergenic	-21304	NM_014943	22882	Hs.377090	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
26.9465	chr21	34524615	34525114	+	0	NA	Intergenic	Intergenic	17677	NR_024102	728409	Hs.125234	NR_024102	ENSG00000229086	LINC01548	C21orf54	long intergenic non-protein coding RNA 1548	ncRNA
51.549	chr13	80376830	80377329	+	0	NA	Intergenic	Intergenic	-1442	NR_125785	102724076	Hs.208617	NR_125785	ENSG00000229011	LINC01038	-	long intergenic non-protein coding RNA 1038	ncRNA
37.5945	chr11	85517802	85518301	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	4151	NM_001289608	54843	Hs.369520	NM_032379	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
27.4958-2	chr7	111933388	111933887	+	0	NA	intron (NM_021994, intron 2 of 11)	AluJb|SINE|Alu	86994	NM_021994	11179	Hs.655904	NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
23.7469	chr11	119905892	119906391	+	0	NA	Intergenic	Intergenic	93480	NM_001330382	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
17.986	chr17	55595970	55596469	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	4739	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
10.013	chr6	122685190	122685689	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-35257	NM_001243094	3298	Hs.158195	NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
18.7615-3	chr6	5636813	5637312	+	0	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	58443	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
23.6452	chr9	123012212	123012711	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-5133	NR_029604	406939		NR_029604	ENSG00000207814	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
28.4164-2	chr7	127734632	127735131	+	0	NA	Intergenic	Intergenic	12968	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
30.7263	chr4	56716127	56716626	+	0	NA	Intergenic	LTR1|LTR|ERV1	-3440	NM_178237	55763	Hs.269665	NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
38.962	chr2	3680651	3681150	+	0	NA	intron (NM_199235, intron 4 of 7)	intron (NM_199235, intron 4 of 7)	-24886	NM_018436	55821	Hs.97899	NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
22.66	chr6	157192523	157193022	+	0	NA	exon (NM_020732, exon 3 of 20)	exon (NM_020732, exon 3 of 20)	-91907	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
21.831	chr3	32045619	32046118	+	0	NA	Intergenic	Intergenic	-22526	NM_017784	114884	Hs.150122	NM_017784	ENSG00000144645	OSBPL10	ORP10|OSBP9	oxysterol binding protein like 10	protein-coding
20.1368	chr8	70509278	70509777	+	0	NA	intron (NR_132437, intron 1 of 16)	intron (NR_132437, intron 1 of 16)	4392	NR_132437	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding
22.815-3	chr2	202003639	202004138	+	0	NA	3' UTR (NM_001308043, exon 5 of 5)	3' UTR (NM_001308043, exon 5 of 5)	-1110	NM_001202515	8837	Hs.390736	NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD like apoptosis regulator	protein-coding
57.2584-2	chr5	38424292	38424791	+	0	NA	intron (NM_152403, intron 12 of 21)	intron (NM_152403, intron 12 of 21)	20907	NM_182798	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
17.9048-3	chr6	138538471	138538970	+	0	NA	3' UTR (NM_021635, exon 1 of 1)	3' UTR (NM_021635, exon 1 of 1)	907	NM_021635	59351	Hs.302016	NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
32.3508-2	chr20	24945778	24946277	+	0	NA	intron (NM_020531, intron 8 of 8)	L2|LINE|L2	16161	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
16.8613-4	chr15	29980831	29981330	+	0	NA	Intergenic	MIR|SINE|MIR	13941	NR_135221	100130111	Hs.525720	NR_135221	ENSG00000256802	LOC100130111	-	uncharacterized LOC100130111	ncRNA
25.6225-2	chrX	147226054	147226553	+	0	NA	Intergenic	Intergenic	163454	NM_152578	158521	Hs.128580	NM_152578	ENSG00000176988	FMR1NB	CT37|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding
38.9963	chr4	7896466	7896965	+	0	NA	intron (NM_001134647, intron 1 of 17)	intron (NM_001134647, intron 1 of 17)	-44013	NM_203423	389199	Hs.375210	NM_203423		LOC389199	-	uncharacterized LOC389199	protein-coding
42.2621	chr13	47196930	47197429	+	0	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	69883	NM_015116	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
17.122-3	chr6	86838582	86839081	+	0	NA	Intergenic	L1PB1|LINE|L1	-450380	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5	ncRNA
12.8904	chr13	31325718	31326217	+	0	NA	intron (NM_001204406, intron 3 of 5)	intron (NM_001204406, intron 3 of 5)	16322	NM_001629	241	Hs.507658	NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
22.815-4	chr9	18122071	18122570	+	0	NA	Intergenic	Intergenic	-351759	NM_052866	92949	Hs.741483	NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
17.986-3	chr1	114759297	114759796	+	0	NA	Intergenic	Intergenic	-63074	NM_001270805	148281	Hs.370963	NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
15.4212	chr9	17532458	17532957	+	0	NA	Intergenic	Intergenic	-46245	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
17.122-4	chr14	78128175	78128674	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-45314	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
18.4466-2	chr4	53165271	53165770	+	0	NA	Intergenic	Intergenic	248023	NM_001297608	132671	Hs.527090	NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
28.8273	chr5	43643776	43644275	+	0	NA	intron (NM_001331026, intron 6 of 20)	Tigger12A|DNA|TcMar-Tigger	-40693	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
20.1863	chr12	26981101	26981600	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	4781	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
22.1396	chr6	23004207	23004706	+	0	NA	Intergenic	Intergenic	-286303	NR_134613	105374972	Hs.484889	NR_134613		LOC105374972	-	uncharacterized LOC105374972	ncRNA
28.6967	chr5	133238207	133238706	+	0	NA	Intergenic	Intergenic	-10912	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
38.4771	chr3	10463664	10464163	+	0	NA	intron (NM_001330611, intron 2 of 21)	intron (NM_001330611, intron 2 of 21)	-27667	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
21.0237	chr12	3816171	3816670	+	0	NA	intron (NM_032680, intron 3 of 10)	L3b|LINE|CR1	45946	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
29.3181	chr17	78419443	78419942	+	0	NA	Intergenic	Intergenic	26474	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
11.1634-2	chr2	33651559	33652058	+	0	NA	Intergenic	Intergenic	8225	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
33.3255	chr3	170246419	170246918	+	0	NA	intron (NM_020949, intron 1 of 7)	intron (NM_020949, intron 1 of 7)	57195	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding
10.8938	chr17	25658164	25658663	+	0	NA	Intergenic	Intergenic	37307	NM_015626	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
16.517	chr3	52070369	52070868	+	0	NA	Intergenic	Intergenic	19843	NM_001947	1849	Hs.591664	NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
32.7084	chr8	57532079	57532578	+	0	NA	Intergenic	Intergenic	-59946	NR_038236	100507632	Hs.583755	NR_038236	ENSG00000246430	LINC00968	-	long intergenic non-protein coding RNA 968	ncRNA
13.6151	chr3	7701696	7702195	+	0	NA	intron (NM_000844, intron 8 of 9)	L1MC4|LINE|L1	-124974	NR_046606	100873937	Hs.570608	NR_046606	ENSG00000236202	GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
11.4327	chrX	47546566	47547065	+	0	NA	Intergenic	Intergenic	-19775	NR_033924	392459	Hs.562045	NR_033924	ENSG00000187893	CXXC1P1	CXorf25|NCRNA00236	CXXC finger protein 1 pseudogene 1	pseudo
20.57-2	chr3	11952718	11953217	+	0	NA	Intergenic	Intergenic	-64574	NR_135610	132001	Hs.475472	NM_138807	ENSG00000144559	TAMM41	C3orf31|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
28.041	chr7	93704650	93705149	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-71205	NR_133909	10282	Hs.489132	NM_005868	ENSG00000105829	BET1	HBET1	Bet1 golgi vesicular membrane trafficking protein	protein-coding
21.7198	chr3	16883272	16883771	+	0	NA	Intergenic	Intergenic	-42931	NM_001144382	23228	Hs.202010	NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
10.0436	chr13	98967642	98968141	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	107113	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
18.2974	chr5	66106800	66107299	+	0	NA	intron (NM_198828, intron 3 of 5)	intron (NM_198828, intron 3 of 5)	-17555	NM_015183	375449	Hs.595458	NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
62.66	chr21	33707162	33707661	+	0	NA	intron (NM_014825, intron 28 of 38)	intron (NM_014825, intron 28 of 38)	42220	NR_002996	677846	Hs.712293	NR_002996	ENSG00000200792	SNORA80A	ACA67|SNORA80	small nucleolar RNA, H/ACA box 80A	snoRNA
24.5346	chr5	7337460	7337959	+	0	NA	Intergenic	Intergenic	10381	NR_134277	101929261	Hs.308202	NR_134277	ENSG00000250668	LINC02123	-	long intergenic non-protein coding RNA 2123	ncRNA
19.5861-5	chr5	170178575	170179074	+	0	NA	Intergenic	Intergenic	-31899	NM_014211	2568	Hs.26225	NM_014211	ENSG00000094755	GABRP	-	gamma-aminobutyric acid type A receptor pi subunit	protein-coding
13.7779	chr17	62406357	62406856	+	0	NA	intron (NM_000442, intron 1 of 1)	L2c|LINE|L2	477	NM_000442	5175	Hs.376675	NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
12.1325	chr6	34031323	34031822	+	0	NA	intron (NM_001282847, intron 2 of 9)	intron (NM_001282847, intron 2 of 9)	42187	NM_001256813	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
32.5493-3	chr2	23904195	23904694	+	0	NA	intron (NM_052920, intron 5 of 13)	intron (NM_052920, intron 5 of 13)	245540	NM_001242338	54454	Hs.467862	NM_017552	ENSG00000119778	ATAD2B	-	ATPase family, AAA domain containing 2B	protein-coding
12.7084-3	chr4	176728758	176729257	+	0	NA	intron (NR_125901, intron 6 of 7)	MIR|SINE|MIR	5258	NM_201591	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
44.1454	chr6	133992433	133992932	+	0	NA	intron (NR_109982, intron 4 of 8)	MSTA|LTR|ERVL-MaLR	-149603	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
14.2829	chr4	38809847	38810346	+	0	NA	Intergenic	SVA_D|Other|Other	-3684	NM_003263	7096	Hs.621817	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding
15.9688-7	chr18	6203723	6204222	+	0	NA	intron (NM_001330559, intron 12 of 18)	intron (NM_001330559, intron 12 of 18)	-52771	NR_110765	101927150		NR_110765		L3MBTL4-AS1	-	L3MBTL4 antisense RNA 1	ncRNA
17.4473-4	chr3	97667859	97668358	+	0	NA	intron (NM_001042533, intron 7 of 9)	MSTB1|LTR|ERVL-MaLR	23187	NM_001261829	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
25.4212	chr17	60770996	60771495	+	0	NA	TTS (NM_006039)	TTS (NM_006039)	66483	NM_006039	9902	Hs.7835	NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C type 2	protein-coding
15.1428	chr5	2239979	2240478	+	0	NA	Intergenic	Intergenic	72087	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
22.3958	chrX	39313129	39313628	+	0	NA	Intergenic	Intergenic	-62350	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
23.0539-2	chrX	10277733	10278232	+	0	NA	Intergenic	LTR40A1|LTR|ERVL	152997	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
18.1531-3	chr1	233771643	233772142	+	0	NA	intron (NM_002245, intron 1 of 2)	L2a|LINE|L2	11994	NR_039625	100616390		NR_039625	ENSG00000265744	MIR4427	-	microRNA 4427	ncRNA
19.6257-4	chr14	38142604	38143103	+	0	NA	intron (NM_001310135, intron 3 of 32)	intron (NM_001310135, intron 3 of 32)	78449	NM_001310135	319089	Hs.659936	NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
16.4016	chr5	21937951	21938450	+	0	NA	intron (NM_001317227, intron 3 of 11)	MER76|LTR|ERVL	53637	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
10.4769-7	chr6	71836164	71836663	+	0	NA	Intergenic	L2c|LINE|L2	-161732	NM_024576	79627	Hs.648434	NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
26.4975-3	chr9	117021871	117022370	+	0	NA	intron (NM_032888, intron 28 of 60)	MIRb|SINE|MIR	50406	NR_030255	619556		NR_030255	ENSG00000207726	MIR455	MIRN455|hsa-mir-455|mir-455	microRNA 455	ncRNA
26.6756	chr14	27086712	27087211	+	0	NA	Intergenic	L1PA16|LINE|L1	-20001	NM_006489	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
23.4969	chr1	167050457	167050956	+	0	NA	intron (NM_005814, intron 1 of 6)	intron (NM_005814, intron 1 of 6)	9162	NM_005814	10223	Hs.651244	NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
15.7675-5	chr1	167155442	167155941	+	0	NA	intron (NR_110811, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	9351	NR_110811	101928484	Hs.568496	NR_110811		LINC01363	RBSG4	long intergenic non-protein coding RNA 1363	ncRNA
18.1531	chr1	44030064	44030563	+	0	NA	intron (NM_001329138, intron 6 of 36)	intron (NM_001329138, intron 6 of 36)	33782	NM_130440	5792	Hs.272062	NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase, receptor type F	protein-coding
25.1856	chr10	117943722	117944221	+	0	NA	intron (NM_001145453, intron 4 of 9)	intron (NM_001145453, intron 4 of 9)	87848	NM_145793	2674	Hs.388347	NM_005264	ENSG00000151892	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
14.2713	chr22	20360331	20360830	+	0	NA	intron (NR_136572, intron 3 of 5)	intron (NR_136572, intron 3 of 5)	-17089	NM_001242313	728229	Hs.376511	NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
14.908-2	chrX	10039722	10040221	+	0	NA	intron (NM_015691, intron 3 of 22)	MIRb|SINE|MIR	56176	NM_015691	55841	Hs.527524	NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
15.4516-2	chr1	208282220	208282719	+	0	NA	intron (NM_025179, intron 4 of 31)	intron (NM_025179, intron 4 of 31)	135196	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
56.8403	chr2	205887690	205888189	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	477423	NM_001302769	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
13.019	chr14	67896473	67896972	+	0	NA	Intergenic	MIRb|SINE|MIR	11925	NR_049879	100847064		NR_049879	ENSG00000265993	MIR5694	-	microRNA 5694	ncRNA
35.1999-2	chr7	45091505	45092004	+	0	NA	intron (NM_001029835, intron 2 of 9)	ERV3-16A3_I-int|LTR|ERVL	24521	NM_001029835	83605	Hs.148272	NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffolding protein	protein-coding
10.7624-2	chr10	32054093	32054592	+	0	NA	Intergenic	Intergenic	143512	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
26.0033	chr11	43946626	43947125	+	0	NA	Intergenic	Intergenic	-4381	NR_038907	100507300	Hs.664588	NR_038907	ENSG00000244926	ALKBH3-AS1	-	ALKBH3 antisense RNA 1	ncRNA
31.549	chr5	150974780	150975279	+	0	NA	Intergenic	Intergenic	-26524	NM_001447	2196	Hs.591255	NM_001447	ENSG00000086570	FAT2	CDHF8|CDHR9|HFAT2|MEGF1	FAT atypical cadherin 2	protein-coding
14.2597-2	chr1	167055196	167055695	+	0	NA	intron (NM_005814, intron 1 of 6)	intron (NM_005814, intron 1 of 6)	4423	NM_005814	10223	Hs.651244	NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
18.9279-4	chr6	119359096	119359595	+	0	NA	intron (NM_001100411, intron 1 of 16)	HAL1|LINE|L1	30963	NR_030315	693128		NR_030315	ENSG00000207982	MIR548B	MIRN548B	microRNA 548b	ncRNA
18.9279	chr12	3403667	3404166	+	0	NA	Intergenic	Intergenic	-86599	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19.914	chr1	191244758	191245257	+	0	NA	Intergenic	L1PA10|LINE|L1	650987	NR_033922	440704	Hs.518802	NR_033922	ENSG00000231175	LINC01720	-	long intergenic non-protein coding RNA 1720	ncRNA
52.4109	chr8	66057477	66057976	+	0	NA	Intergenic	Intergenic	34849	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA
33.5952	chr5	32254899	32255398	+	0	NA	intron (NM_001040446, intron 8 of 15)	MER102a|DNA|hAT-Charlie	57966	NM_001294344	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
35.376	chr12	70238049	70238548	+	0	NA	intron (NM_182530, intron 1 of 24)	intron (NM_182530, intron 1 of 24)	19195	NM_182530	196446	Hs.253773	NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor-like	protein-coding
20.7727	chr20	20529766	20530265	+	0	NA	intron (NM_020343, intron 23 of 39)	intron (NM_020343, intron 23 of 39)	163251	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding
30.2457	chr3	140775624	140776123	+	0	NA	intron (NM_080862, intron 1 of 2)	intron (NM_080862, intron 1 of 2)	5629	NM_080862	92369	Hs.655112	NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
13.7059-2	chr10	121977212	121977711	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-239005	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PLPP4	DPPL2|PPAPDC1|PPAPDC1A	phospholipid phosphatase 4	protein-coding
19.6257-6	chr6	136163567	136164066	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-9018	NM_018945	27115	Hs.744230	NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
14.034-3	chr12	7125019	7125518	+	0	NA	intron (NM_005768, intron 1 of 12)	intron (NM_005768, intron 1 of 12)	574	NM_005768	10162	Hs.655248	NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
13.4199-6	chr14	51914075	51914574	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-41515	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
41.2552	chr4	31240150	31240649	+	0	NA	Intergenic	LTR1B|LTR|ERV1	67633	NR_125935	102723778	Hs.210739	NR_125935	ENSG00000251182	LOC102723778	-	uncharacterized LOC102723778	ncRNA
21.7522	chr3	124036865	124037364	+	0	NA	intron (NM_001024660, intron 6 of 59)	intron (NM_001024660, intron 6 of 59)	-56065	NR_106731	102464832		NR_106731	ENSG00000276656	MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
15.0446-4	chr6	19857844	19858343	+	0	NA	Intergenic	Intergenic	20492	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding
15.1999-2	chr11	61263453	61263952	+	0	NA	Intergenic	Intergenic	-12366	NR_039708	100616470		NR_039708	ENSG00000266006	MIR4488	mir-4488	microRNA 4488	ncRNA
81.463	chr3	180269215	180269714	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-50454	NM_001288582	151613	Hs.43213	NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
13.3161	chr7	113575785	113576284	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-16952	NM_002711	5506	Hs.458309	NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding
10.2319	chr15	71326916	71327415	+	0	NA	intron (NM_017691, intron 14 of 15)	L1PA10|LINE|L1	80674	NM_001102658	196993	Hs.646533	NM_001102658	ENSG00000225362	CT62	-	cancer/testis antigen 62	protein-coding
15.867	chr15	52549679	52550178	+	0	NA	intron (NM_018728, intron 10 of 40)	MIR|SINE|MIR	19469	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
11.4327-4	chr13	91272695	91273194	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	127402	NR_120414	101927224	Hs.385801	NR_120414		LINC01049	-	long intergenic non-protein coding RNA 1049	ncRNA
10.7883	chr9	131145831	131146330	+	0	NA	intron (NM_030914, intron 2 of 4)	intron (NM_030914, intron 2 of 4)	-8820	NR_039815	100616335		NR_039815	ENSG00000283335	MIR219B	MIR2964A|hsa-mir-219b|mir-219b	microRNA 219b	ncRNA
12.4489	chrX	133852306	133852805	+	0	NA	intron (NM_001316888, intron 1 of 2)	intron (NM_001316888, intron 1 of 2)	15111	NM_001316888	10761	Hs.496811	NM_021796	ENSG00000170965	PLAC1	CT92|OOSP2L	placenta specific 1	protein-coding
32.9757	chr1	162946298	162946797	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-91849	NM_001102445	5999	Hs.386726	NM_005613	ENSG00000117152	RGS4	RGP4|SCZD9	regulator of G-protein signaling 4	protein-coding
17.3993-2	chr3	51656814	51657313	+	0	NA	intron (NM_001322257, intron 2 of 21)	intron (NM_001322257, intron 2 of 21)	-48128	NR_024012	51368	Hs.517864	NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264	protein-coding
10.3574-2	chr4	48906058	48906557	+	0	NA	intron (NM_152398, intron 2 of 5)	AluJr|SINE|Alu	2538	NM_001014446	132299	Hs.95835	NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
23.7366-2	chr3	139695539	139696038	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	41761	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
13.0016	chr11	79002826	79003325	+	0	NA	intron (NM_001098816, intron 2 of 33)	intron (NM_001098816, intron 2 of 33)	110078	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
24.8413	chr1	245462078	245462577	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	144040	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
37.7989-3	chrX	63085675	63086174	+	0	NA	Intergenic	L1PA4|LINE|L1	-79957	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468|mir-1468	microRNA 1468	ncRNA
17.4473-2	chr20	61282493	61282992	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	8945	NM_016354	28231	Hs.235782	NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
11.1691	chr15	68868502	68869001	+	0	NA	intron (NM_001324014, intron 2 of 12)	intron (NM_001324014, intron 2 of 12)	-2557	NM_006091	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
13.1515	chr4	115414779	115415278	+	0	NA	Intergenic	L1PA16|LINE|L1	-104530	NM_001128174	7368	Hs.144197	NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
17.2816	chr3	179384337	179384836	+	0	NA	intron (NM_003940, intron 1 of 20)	intron (NM_003940, intron 1 of 20)	13653	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
28.7615	chr13	92601137	92601636	+	0	NA	intron (NM_004466, intron 6 of 7)	intron (NM_004466, intron 6 of 7)	403074	NR_120382	100873970	Hs.567269	NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
14.3297	chr4	102572906	102573405	+	0	NA	Intergenic	Intergenic	-138609	NM_017935	55024	Hs.480400	NM_017935	ENSG00000153064	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding
27.2584	chr1	201239765	201240264	+	0	NA	Intergenic	Intergenic	-12566	NM_000299	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1	protein-coding
17.3993-3	chr5	77652883	77653382	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-3195	NM_001290229	9522	Hs.482587	NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
10.9044	chr6	41407348	41407847	+	0	NA	Intergenic	L2b|LINE|L2	-62585	NR_120347	103106903	Hs.563396	NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
21.2668	chr20	45754418	45754917	+	0	NA	intron (NM_005244, intron 9 of 15)	intron (NM_005244, intron 9 of 15)	-40942	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
19.7881-2	chr2	96924359	96924858	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	7143	NM_017849	55654	Hs.164303	NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
12.7901-2	chr21	34411771	34412270	+	0	NA	Intergenic	Intergenic	13804	NM_005806	10215	Hs.176977	NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte lineage transcription factor 2	protein-coding
17.8516-4	chr2	31231528	31232027	+	0	NA	intron (NM_001329097, intron 1 of 12)	intron (NM_001329097, intron 1 of 12)	120729	NM_001253827	79623	Hs.468058	NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
28.6967-2	chr14	76434787	76435286	+	0	NA	intron (NM_001329939, intron 4 of 7)	intron (NM_001329939, intron 4 of 7)	13329	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
13.6251	chr8	40229380	40229879	+	0	NA	Intergenic	Intergenic	218642	NM_020130	56892	Hs.591849	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
10.1412	chr7	117681347	117681846	+	0	NA	Intergenic	Intergenic	-142490	NM_016200	51691	Hs.655046	NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
18.041	chr13	24027283	24027782	+	0	NA	Intergenic	Intergenic	-16119	NR_038995	100506697	Hs.50118	NR_038995	ENSG00000232977	LINC00327	NCRNA00327	long intergenic non-protein coding RNA 327	ncRNA
22.9243	chr20	24114791	24115290	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-65363	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
13.2057	chr6	145823384	145823883	+	0	NA	Intergenic	Intergenic	-232372	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
11.4509-2	chr8	49320382	49320881	+	0	NA	Intergenic	Intergenic	-143496	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
17.122	chr12	133128079	133128578	+	0	NA	intron (NM_001142641, intron 5 of 16)	intron (NM_001142641, intron 5 of 16)	-30255	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
19.0658-2	chr2	31692216	31692715	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-54854	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
13.536-2	chr1	121127359	121127858	+	0	NA	intron (NM_001271870, intron 4 of 5)	intron (NM_001271870, intron 4 of 5)	12157	NR_104189	100873165	Hs.568525	NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
49.8297	chr12	7638997	7639496	+	0	NA	exon (NM_004244, exon 10 of 17)	exon (NM_004244, exon 10 of 17)	17168	NM_203416	9332	Hs.504641	NM_004244	ENSG00000177575	CD163	M130|MM130|SCARI1	CD163 molecule	protein-coding
11.4997-2	chr12	27885149	27885648	+	0	NA	intron (NM_001190864, intron 5 of 6)	intron (NM_001190864, intron 5 of 6)	21692	NM_001190864	60488	Hs.714076	NM_021821	ENSG00000061794	MRPS35	HDCMD11P|MDS023|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding
13.2514	chr22	41090427	41090926	+	0	NA	Intergenic	MIR|SINE|MIR	15494	NM_005297	2847	Hs.248122	NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
35.0169	chr14	99584336	99584835	+	0	NA	Intergenic	CpG	153465	NM_022898	64919	Hs.709690	NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B	protein-coding
28.8941-2	chr2	195755404	195755903	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	160334	NR_110223	101927431	Hs.558215	NR_110223	ENSG00000230173	LINC01790	-	long intergenic non-protein coding RNA 1790	ncRNA
16.7778-4	chr2	241523942	241524441	+	0	NA	non-coding (NR_103792, exon 1 of 1)	non-coding (NR_103792, exon 1 of 1)	1542	NR_103792	101752400	Hs.585987	NR_103792	ENSG00000260942	CAPN10-AS1	locus959	CAPN10 antisense RNA 1 (head to head)	ncRNA
23.0539	chr5	144738318	144738817	+	0	NA	Intergenic	Intergenic	476365	NM_182960	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
16.6959-5	chr14	32774024	32774523	+	0	NA	Intergenic	Intergenic	-24206	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
19.6257-3	chr10	48562741	48563240	+	0	NA	Intergenic	Intergenic	-123852	NM_004962	2662	Hs.2171	NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
21.5614	chr12	8123284	8123783	+	0	NA	Intergenic	CpG	-34641	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
19.8716	chr5	11918692	11919191	+	0	NA	Intergenic	Intergenic	-14786	NM_001288717	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
12.1183	chr2	216811243	216811742	+	0	NA	intron (NM_018000, intron 3 of 4)	intron (NM_018000, intron 3 of 4)	66854	NM_018000	55686	Hs.620391	NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding