PeakID (cmd=annotatePeaks.pl DBA_MYCDB_diffbind_reportLvC_contrast.LMycUP.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
13.0277-2	chr20	1262137	1262636	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	15451	NM_001318234	9751	Hs.323833	NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
15.0307	chr1	38679280	38679779	+	0	NA	intron (NR_038928, intron 1 of 3)	intron (NR_038928, intron 1 of 3)	910	NR_038928	339442	Hs.434245	NR_038928	ENSG00000237290	LINC01343	-	long intergenic non-protein coding RNA 1343	ncRNA
13.7263-2	chr1	117396369	117396868	+	0	NA	Intergenic	Intergenic	-55927	NM_020440	5738	Hs.418093	NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
13.1695-2	chr6	89673174	89673673	+	0	NA	promoter-TSS (NM_001286428)	promoter-TSS (NM_001286428)	-75	NM_001286426	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
21.9179-2	chr18	31385429	31385928	+	0	NA	Intergenic	Intergenic	227137	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
20.9098	chr1	212997188	212997687	+	0	NA	Intergenic	Intergenic	23554	NM_001024601	149643	Hs.153274	NM_001024601	ENSG00000185523	SPATA45	C1orf227	spermatogenesis associated 45	protein-coding
18.729	chr12	45733750	45734249	+	0	NA	intron (NM_001025356, intron 3 of 19)	intron (NM_001025356, intron 3 of 19)	47533	NM_001142678	196527	Hs.505339	NM_001025356	ENSG00000177119	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
33.2422	chr8	141599121	141599620	+	0	NA	intron (NM_001164623, intron 1 of 17)	intron (NM_001164623, intron 1 of 17)	46276	NM_012154	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
31.2901	chr12	94699040	94699539	+	0	NA	TTS (NM_001346457)	TTS (NM_001346457)	42992	NR_037687	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
18.1531-2	chr1	243895923	243896422	+	0	NA	intron (NM_001206729, intron 2 of 13)	intron (NM_001206729, intron 2 of 13)	110412	NM_181690	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
31.798	chr16	81514511	81515010	+	0	NA	intron (NM_198390, intron 1 of 20)	L2a|LINE|L2	-14194	NM_030629	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19.5468-4	chr8	29133081	29133580	+	0	NA	Intergenic	Intergenic	-12720	NM_015254	23303	Hs.444767	NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
18.962	chr18	70533981	70534480	+	0	NA	intron (NM_138966, intron 1 of 10)	CpG	580	NM_001201465	81832	Hs.465407	NM_138966	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin and tolloid like 1	protein-coding
24.3771	chr15	86086284	86086783	+	0	NA	intron (NM_007200, intron 4 of 36)	intron (NM_007200, intron 4 of 36)	-76648	NM_001270546	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
17.2584-4	chr12	63310745	63311244	+	0	NA	intron (NM_020700, intron 1 of 9)	intron (NM_020700, intron 1 of 9)	17671	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
20.5998	chr12	79409849	79410348	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-29335	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
13.5164-3	chr18	42406390	42406889	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	143492	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
14.0561	chr15	92544624	92545123	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	147343	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
21.9179-3	chr13	114479153	114479652	+	0	NA	intron (NM_182614, intron 3 of 8)	intron (NM_182614, intron 3 of 8)	17186	NM_182614	348013	Hs.280805	NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
18.2391-3	chr5	95852924	95853423	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-84188	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
15.0307-6	chr2	96628485	96628984	+	0	NA	intron (NM_001310154, intron 6 of 88)	intron (NM_001310154, intron 6 of 88)	29334	NM_001310154	400986	Hs.646318	NM_001010914	ENSG00000174501	ANKRD36C	-	ankyrin repeat domain 36C	protein-coding
35.8336-2	chr18	51773399	51774156	+	0	NA	Intergenic	Intergenic	-22072	NM_007195	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB	DNA polymerase iota	protein-coding
19.8297	chr9	1032112	1032611	+	0	NA	Intergenic	Intergenic	-15782	NR_110643	102800446	Hs.171043	NR_110643		LINC01230	TCONS_00015639|linc-DMRT2|lnc-DRMT2	long intergenic non-protein coding RNA 1230	ncRNA
22.5414	chr12	103941387	103941886	+	0	NA	promoter-TSS (NR_110103)	promoter-TSS (NR_110103)	64	NR_110103	101929084	Hs.440981	NR_110103	ENSG00000257762	LOC101929084	-	uncharacterized LOC101929084	ncRNA
14.437	chr12	93378806	93379305	+	0	NA	Intergenic	L1PA15|LINE|L1	-55948	NM_003566	8411	Hs.567367	NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
17.9588	chr12	75017962	75018461	+	0	NA	Intergenic	L1MC1|LINE|L1	86660	NM_001136262	552889	Hs.744849	NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
13.8091-2	chr16	30751610	30752109	+	0	NA	TTS (NM_006662)	TTS (NM_006662)	347	NM_001256829	100862671	Hs.667372	NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
20.7676	chr16	4968726	4969225	+	0	NA	intron (NM_002705, intron 1 of 21)	intron (NM_002705, intron 1 of 21)	18161	NM_002705	5493	Hs.192233	NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
23.8934	chr8	17328603	17329102	+	0	NA	Intergenic	Intergenic	-25745	NM_001008539	6542	Hs.448520	NM_003046	ENSG00000003989	SLC7A2	ATRC2|CAT2|HCAT2	solute carrier family 7 member 2	protein-coding
32.8067-3	chr7	123283797	123284296	+	0	NA	Intergenic	Intergenic	-11815	NM_207163	442721	Hs.592260	NM_207163	ENSG00000170807	LMOD2	C-LMOD|CLMOD	leiomodin 2	protein-coding
13.4872	chr8	144598690	144599189	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	24681	NM_015117	23144	Hs.521915	NM_015117	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
23.2057	chr12	72967922	72968421	+	0	NA	intron (NM_013381, intron 10 of 18)	intron (NM_013381, intron 10 of 18)	-300882	NR_026837	283392	Hs.363603	NM_001025457	ENSG00000236333	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
20.9583	chr8	102168177	102168676	+	0	NA	Intergenic	Intergenic	49534	NM_001267708	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
14.2366-2	chr15	39561945	39562444	+	0	NA	Intergenic	Intergenic	19324	NR_144508	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
17.7469-2	chr4	159931664	159932163	+	0	NA	intron (NM_152543, intron 1 of 4)	L3|LINE|CR1	24420	NM_152543	152940	Hs.415576	NM_152543	ENSG00000164123	C4orf45	-	chromosome 4 open reading frame 45	protein-coding
14.2136	chr12	84993268	84993767	+	0	NA	Intergenic	Intergenic	313091	NM_001146335	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
14.6344-3	chr5	1011117	1011616	+	0	NA	intron (NM_001271082, intron 3 of 10)	Charlie18a|DNA|hAT-Charlie	2289	NM_001271082	85409	Hs.240951	NM_033120	ENSG00000145506	NKD2	Naked2	naked cuticle homolog 2	protein-coding
13.6151	chr18	46259059	46259558	+	0	NA	intron (NM_014772, intron 7 of 11)	intron (NM_014772, intron 7 of 11)	62337	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
15.7349-2	chr6	6826301	6826800	+	0	NA	Intergenic	Intergenic	-203491	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
32.9585	chr12	86173432	86173931	+	0	NA	Intergenic	Intergenic	56637	NM_005447	9182	Hs.527881	NM_005447	ENSG00000198774	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association domain family member 9	protein-coding
15.1004-2	chr1	32666157	32666656	+	0	NA	intron (NM_024296, intron 1 of 5)	CpG	419	NM_001301011	79140	Hs.534482	NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
13.363	chr6	99796109	99796608	+	0	NA	intron (NM_001346530, intron 1 of 5)	intron (NM_001346530, intron 1 of 5)	1173	NM_032511	84553	Hs.573245	NM_032511	ENSG00000146267	FAXC	C6orf168|dJ273F20	failed axon connections homolog	protein-coding
18.729-2	chr4	142002895	142003394	+	0	NA	intron (NM_020724, intron 1 of 6)	intron (NM_020724, intron 1 of 6)	51472	NM_020724	57484	Hs.659104	NM_020724	ENSG00000170153	RNF150	-	ring finger protein 150	protein-coding
27.2354	chr6	107513956	107514455	+	0	NA	intron (NM_020381, intron 7 of 7)	intron (NM_020381, intron 7 of 7)	-78569	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
14.8017-3	chr18	45759671	45760170	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-96240	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
13.8828-5	chr6	52362431	52362930	+	0	NA	3' UTR (NM_012288, exon 11 of 11)	3' UTR (NM_012288, exon 11 of 11)	76875	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
17.167	chr14	82994347	82994846	+	0	NA	Intergenic	Intergenic	-905191	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
21.1351	chr18	74409468	74409967	+	0	NA	Intergenic	Intergenic	7731	NR_122073	400661	Hs.514963	NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
19.431-3	chr7	119112439	119112938	+	0	NA	Intergenic	Intergenic	434741	NR_131960	105375475	Hs.566654	NR_131960	ENSG00000225546	LVCAT5	-	liver cancer-associated transcript 5	ncRNA
17.7728	chr3	165908162	165908661	+	0	NA	Intergenic	PRIMAX-int|LTR|ERV1	-353151	NM_000055	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
18.3268	chr5	22152835	22153334	+	0	NA	TTS (NR_003921)	TTS (NR_003921)	10623	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	pro-melanin concentrating hormone like 1 (pseudogene)	pseudo
24.4733	chr8	38388135	38388634	+	0	NA	Intergenic	Intergenic	-2204	NM_207412	389649	Hs.546586	NM_207412	ENSG00000196166	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
14.1567	chr3	108108206	108108705	+	0	NA	intron (NM_014981, intron 38 of 41)	L2a|LINE|L2	77823	NM_001282557	11148	Hs.225968	NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HERV-H LTR-associating 2	protein-coding
21.4448	chr4	40664756	40665255	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-33122	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
69.2445	chr18	73924888	73925387	+	0	NA	Intergenic	Intergenic	90184	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
22.4642	chr16	58120504	58121003	+	0	NA	Intergenic	MIRb|SINE|MIR	42543	NM_013242	29105	Hs.532755	NM_013242	ENSG00000070761	CFAP20	C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
13.851	chr4	2932445	2932944	+	0	NA	TTS (NM_001119)	TTS (NM_001119)	3270	NM_001120	10227	Hs.632581	NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
31.0679	chr5	30606980	30607479	+	0	NA	Intergenic	MER4A|LTR|ERV1	-586533	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
17.3049-2	chr1	234349856	234350355	+	0	NA	5' UTR (NM_001300845, exon 1 of 7)	5' UTR (NM_001300845, exon 1 of 7)	148	NM_001300845	148641	Hs.158748	NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
14.3063	chr10	47959435	47959934	+	0	NA	Intergenic	L2a|LINE|L2	-196259	NR_033407	1517	Hs.568350	NR_033407		CTSLP2	CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4	cathepsin L pseudogene 2	pseudo
16.4207-3	chr18	31739229	31739728	+	0	NA	intron (NM_001198546, intron 1 of 9)	CpG	62956	NM_001282527	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
37.5449-2	chr13	102528307	102528806	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	40439	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
19.8716	chr7	138722944	138723443	+	0	NA	Intergenic	Intergenic	-2418	NM_080660	92092	Hs.512833	NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
19.7062-3	chr2	240168378	240168877	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-51474	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
13.5952-2	chr13	69817472	69817971	+	0	NA	intron (NR_125752, intron 1 of 3)	ERVL-int|LTR|ERVL	21243	NR_125752	103689913	Hs.585628	NR_125752		LINC00383	LINC00401	long intergenic non-protein coding RNA 383	ncRNA
16.6154-2	chr14	27905347	27905846	+	0	NA	Intergenic	Intergenic	-176198	NR_039992	100505967	Hs.668484	NR_039992	ENSG00000258548	LINC00645	-	long intergenic non-protein coding RNA 645	ncRNA
14.0561-5	chr3	171822169	171822668	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	64074	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
20.0218	chr3	3080134	3080633	+	0	NA	TTS (NR_046554)	TTS (NR_046554)	22446	NR_046554	100873975	Hs.581502	NR_046554		CNTN4-AS1	-	CNTN4 antisense RNA 1	ncRNA
24.6218	chr18	46459898	46460397	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	9030	NM_001190823	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
13.8616-2	chr8	138749976	138750475	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-324394	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
14.2251-3	chr1	38325180	38325679	+	0	NA	promoter-TSS (NM_005955)	promoter-TSS (NM_005955)	-137	NM_005955	4520	Hs.471991	NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding
14.8017	chr13	99058005	99058504	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	116125	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
26.6959-2	chr2	50675609	50676108	+	0	NA	intron (NM_001135659, intron 18 of 23)	intron (NM_001135659, intron 18 of 23)	-100964	NM_138735	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
23.1158-2	chr14	71175379	71175878	+	0	NA	intron (NR_125769, intron 3 of 3)	LTR9|LTR|ERV1	10213	NR_125769	103695436	Hs.572296	NR_125769	ENSG00000258689	LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
16.0033-3	chr9	97535137	97535636	+	0	NA	exon (NM_001193331, exon 3 of 8)	exon (NM_001193331, exon 3 of 8)	13455	NM_001193329	84909	Hs.434253	NM_032823	ENSG00000148120	C9orf3	AOPEP|AP-O|APO|C90RF3|ONPEP	chromosome 9 open reading frame 3	protein-coding
20.1412	chr18	75496841	75497340	+	0	NA	Intergenic	Intergenic	208593	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
35.0864	chr14	37325489	37325988	+	0	NA	intron (NM_030631, intron 2 of 9)	intron (NM_030631, intron 2 of 9)	95858	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
45.2871	chr6	51883871	51884370	+	0	NA	intron (NM_170724, intron 33 of 60)	MIRc|SINE|MIR	68303	NM_138694	5314	Hs.662050	NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
18.8273	chr4	85339060	85339559	+	0	NA	Intergenic	Intergenic	80078	NM_006168	4825	Hs.546270	NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
21.5802	chr7	137489650	137490149	+	0	NA	intron (NM_001321708, intron 1 of 32)	intron (NM_001321708, intron 1 of 32)	41179	NM_001321709	9162	Hs.242947	NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding
23.0364	chr18	48724338	48724837	+	0	NA	promoter-TSS (NM_016626)	promoter-TSS (NM_016626)	-536	NM_016626	51320	Hs.465144	NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
13.1695	chr13	100578617	100579116	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	30553	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA
24.7625-2	chr1	33896448	33896947	+	0	NA	Intergenic	CpG	-41535	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
21.343	chr14	103285600	103286099	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	42033	NM_145725	7187	Hs.510528	NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor associated factor 3	protein-coding
14.9349-2	chr2	18492603	18493102	+	0	NA	Intergenic	Intergenic	249107	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
14.0012-2	chr8	38033833	38034770	+	0	NA	promoter-TSS (NR_045493)	promoter-TSS (NR_045493)	-53	NM_014462	27257	Hs.425311	NM_014462	ENSG00000175324	LSM1	CASM|YJL124C	LSM1 homolog, mRNA degradation associated	protein-coding
16.3451	chr2	6194467	6194966	+	0	NA	Intergenic	Intergenic	72606	NR_026833	400940	Hs.378814	NM_207479		LOC400940	-	uncharacterized LOC400940	ncRNA
19.393-2	chr3	107611900	107612399	+	0	NA	intron (NR_015394, intron 1 of 2)	intron (NR_015394, intron 1 of 2)	10097	NR_015394	285205	Hs.134882	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
19.2812-3	chr18	3667171	3667670	+	0	NA	intron (NM_001308390, intron 4 of 10)	MIR|SINE|MIR	63685	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
17.9588-2	chr2	111825872	111826371	+	0	NA	intron (NM_001142807, intron 16 of 17)	intron (NM_001142807, intron 16 of 17)	47044	NR_122074	400997	Hs.652337	NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
69.0309-2	chr4	108964552	108965051	+	0	NA	Intergenic	Intergenic	38981	NM_001331027	3033	Hs.438289	NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
13.6251-3	chr18	46986820	46987319	+	0	NA	promoter-TSS (NM_017653)	promoter-TSS (NM_017653)	10	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
17.5203-2	chr14	59583731	59584230	+	0	NA	Intergenic	Intergenic	-71401	NM_001270520	23002	Hs.19156	NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
15.7187-2	chr3	194115880	194116379	+	0	NA	3' UTR (NM_004488, exon 2 of 2)	3' UTR (NM_004488, exon 2 of 2)	3866	NM_004488	2814	Hs.73734	NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
28.0967	chr2	105050812	105051311	+	0	NA	intron (NR_015399, intron 1 of 3)	intron (NR_015399, intron 1 of 3)	256	NR_015399	150568	Hs.107284	NR_015399	ENSG00000235597	LINC01102	-	long intergenic non-protein coding RNA 1102	ncRNA
14.4249	chr7	20259019	20259518	+	0	NA	non-coding (NR_134567, exon 4 of 5)	non-coding (NR_134567, exon 4 of 5)	2068	NR_134567	100506098	Hs.59203	NR_134567	ENSG00000233834	LOC100506098	-	uncharacterized LOC100506098	ncRNA
14.0012	chr18	34236094	34236593	+	0	NA	intron (NM_001281740, intron 13 of 28)	intron (NM_001281740, intron 13 of 28)	7038	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
18.2391	chr2	121138029	121138528	+	0	NA	Intergenic	Intergenic	34560	NM_002193	3625	Hs.1735	NM_002193	ENSG00000163083	INHBB	-	inhibin beta B subunit	protein-coding
17.4473	chr4	23882556	23883055	+	0	NA	5' UTR (NM_001330753, exon 1 of 12)	5' UTR (NM_001330753, exon 1 of 12)	110	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
21.9179	chr4	113985317	113985816	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	14781	NM_020977	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
13.7572	chr2	236826107	236826606	+	0	NA	intron (NM_014914, intron 11 of 16)	intron (NM_014914, intron 11 of 16)	250296	NM_001301687	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
19.7881-5	chr10	81104362	81104861	+	0	NA	Intergenic	Intergenic	-2609	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
13.4486-2	chr2	37116856	37117355	+	0	NA	intron (NM_003162, intron 7 of 17)	intron (NM_003162, intron 7 of 17)	76510	NM_003162	6801	Hs.127486	NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
17.0115-2	chr4	23891165	23891664	+	0	NA	intron (NM_001330752, intron 2 of 13)	intron (NM_001330752, intron 2 of 13)	286	NM_013261	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
29.1009-4	chr1	201474161	201474660	+	0	NA	intron (NM_001193570, intron 1 of 5)	intron (NM_001193570, intron 1 of 5)	1557	NM_001193571	1465	Hs.108080	NM_004078	ENSG00000159176	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286	cysteine and glycine rich protein 1	protein-coding
15.0724-5	chr15	92416103	92416602	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	18822	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
13.3819-2	chr2	66736557	66737056	+	0	NA	intron (NM_002398, intron 7 of 12)	intron (NM_002398, intron 7 of 12)	-64356	NR_110156	100507073	Hs.667940	NR_110156	ENSG00000232046	LINC01798	-	long intergenic non-protein coding RNA 1798	ncRNA
15.6703-2	chr4	38111535	38112034	+	0	NA	promoter-TSS (NM_001253913)	promoter-TSS (NM_001253913)	-18	NM_001253913	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
38.1248-2	chr9	107616705	107617204	+	0	NA	intron (NM_005502, intron 7 of 49)	intron (NM_005502, intron 7 of 49)	73573	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding
13.0452-4	chrUn_gl000225	7346	7845	+	0	NA	NA	Intergenic	NA	NA								
24.5223	chr18	71559233	71559732	+	0	NA	Intergenic	Intergenic	255517	NM_152676	201456	Hs.664011	NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
13.7779	chr8	75232550	75233315	+	0	NA	intron (NM_020647, intron 1 of 5)	CpG	664	NM_020647	56704	Hs.657367	NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding
18.2102-3	chr9	2623260	2623759	+	0	NA	intron (NM_001018056, intron 1 of 17)	CpG	-1136	NR_015375	401491	Hs.416043	NR_015375	ENSG00000236404	VLDLR-AS1	linc-VLDLR|lincRNA-VLDLR	VLDLR antisense RNA 1	ncRNA
20.7676-2	chr8	142396790	142397289	+	0	NA	Intergenic	Intergenic	-19674	NM_005293	2843	Hs.152432	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
21.4206	chr2	40470689	40471188	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	186506	NM_001252624	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
35.8336	chr8	141223715	141224214	+	0	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	-113330	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
15.5284	chr14	96828287	96828786	+	0	NA	intron (NM_018036, intron 1 of 41)	intron (NM_018036, intron 1 of 41)	1202	NM_018036	55102	Hs.168241	NM_018036	ENSG00000066739	ATG2B	C14orf103	autophagy related 2B	protein-coding
16.3827-3	chr2	50623023	50623522	+	0	NA	intron (NM_001135659, intron 18 of 23)	Charlie20a|DNA|hAT-Charlie	-48378	NM_138735	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
15.4363-2	chr18	74843596	74844095	+	0	NA	intron (NM_001025100, intron 1 of 3)	CpG	929	NM_001025100	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
15.0031-2	chr10	131936769	131937268	+	0	NA	intron (NM_001199868, intron 1 of 11)	intron (NM_001199868, intron 1 of 11)	2345	NM_001321980	10539	Hs.42644	NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
14.7366-2	chr3	113932600	113933400	+	0	NA	Intergenic	Intergenic	-14746	NM_001282563	1814	Hs.121478	NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
17.0553-3	chr6	90715090	90715589	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	111151	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
14.437-3	chr13	71362119	71362618	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-226905	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
15.1713-3	chrX	146407885	146408384	+	0	NA	Intergenic	Intergenic	-41888	NR_030240	574518		NR_030240	ENSG00000207867	MIR514A3	MIR514-3|MIRN514-3|hsa-mir-514a-3	microRNA 514a-3	ncRNA
19.5468-9	chr8	6264694	6265193	+	0	NA	promoter-TSS (NR_040040)	promoter-TSS (NR_040040)	269	NM_001322045	79648	Hs.593807	NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
21.3727	chr14	26751122	26751621	+	0	NA	Intergenic	L1PA11|LINE|L1	315589	NM_006489	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
13.83	chr8	127534647	127535146	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	35815	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding
20.716-2	chr18	44340894	44341728	+	0	NA	Intergenic	Intergenic	-4179	NM_013305	29906	Hs.465025	NM_013305	ENSG00000101638	ST8SIA5	SIAT8-E|SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
18.8606-2	chr11	57671109	57671608	+	0	NA	Intergenic	Intergenic	-119995	NM_001005212	219956	Hs.689841	NM_001005212	ENSG00000186509	OR9Q1	-	olfactory receptor family 9 subfamily Q member 1	protein-coding
17.2125-5	chr4	179085774	179086273	+	0	NA	Intergenic	L1M5|LINE|L1	-256933	NR_108092	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
14.0782-2	chr5	6582579	6583078	+	0	NA	promoter-TSS (NR_024424)	promoter-TSS (NR_024424)	-561	NR_024424	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
13.9041	chr6	3542099	3542598	+	0	NA	Intergenic	Intergenic	-85555	NM_015482	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
25.986-2	chr6	166248018	166248517	+	0	NA	Intergenic	Intergenic	-152772	NR_027284	441177	Hs.708964	NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
17.2584-3	chr18	68101006	68101505	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-49428	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
19.3554	chr11	35840382	35840881	+	0	NA	Intergenic	Intergenic	-124900	NM_174902	143458	Hs.745134	NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
13.7572-2	chr12	68985352	68985851	+	0	NA	Intergenic	Intergenic	-19018	NM_015646	5908	Hs.369920	NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B	RAP1B, member of RAS oncogene family	protein-coding
15.7512-2	chr4	100507452	100507951	+	0	NA	intron (NM_000253, intron 4 of 18)	intron (NM_000253, intron 4 of 18)	22466	NM_001300785	4547	Hs.195799	NM_000253	ENSG00000138823	MTTP	ABL|MTP	microsomal triglyceride transfer protein	protein-coding
69.0309-4	chr2	214968067	214968566	+	0	NA	intron (NR_047660, intron 12 of 14)	L2a|LINE|L2	-307976	NM_001345929	402117	Hs.534834	NM_001080500	ENSG00000174453	VWC2L	-	von Willebrand factor C domain containing protein 2-like	protein-coding
21.0624	chr1	218610558	218611057	+	0	NA	promoter-TSS (NR_031644).2	promoter-TSS (NR_031644).2	-168	NR_031644	100302159		NR_031644	ENSG00000221436	MIR548F3	MIR548F-3|MIRN548F3|hsa-mir-548f-3	microRNA 548f-3	ncRNA
18.5387	chrY	59019575	59020074	+	0	NA	Intergenic	Intergenic	-80579	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
20.278-2	chr2	155089719	155090218	+	0	NA	intron (NM_001301627, intron 2 of 11)	intron (NM_001301627, intron 2 of 11)	223982	NM_001256368	100144595	Hs.683952	NM_001256368		LOC100144595	-	uncharacterized LOC100144595	protein-coding
15.5752	chr11	44338289	44338788	+	0	NA	Intergenic	CpG	-6822	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
29.3181	chr1	180126662	180127161	+	0	NA	intron (NM_001004128, intron 1 of 12)	intron (NM_001004128, intron 1 of 12)	2943	NM_002826	5768	Hs.744925	NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
49.2812	chr1	201077692	201078191	+	0	NA	intron (NM_000069, intron 2 of 43)	intron (NM_000069, intron 2 of 43)	3753	NM_000069	779	Hs.1294	NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
16.0555-2	chr22	50686122	50686621	+	0	NA	exon (NM_001159286, exon 12 of 19)	exon (NM_001159286, exon 12 of 19)	-2971	NM_020461	85378	Hs.336431	NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex associated protein 6	protein-coding
16.3827	chr16	19178927	19179426	+	0	NA	promoter-TSS (NM_016524)	promoter-TSS (NM_016524)	20	NM_001330509	51760	Hs.258326	NM_016524	ENSG00000103528	SYT17	sytXVII	synaptotagmin 17	protein-coding
21.1748	chr3	189900855	189901354	+	0	NA	Intergenic	Intergenic	-60878	NM_001134418	55214	Hs.374191	NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
21.8509	chr19	30162555	30163054	+	0	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	6477	NM_024310	79156	Hs.466383	NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
18.1816	chrUn_gl000214	123125	123624	+	0	NA	NA	Intergenic	NA	NA								
22.9328	chr6	90869712	90870211	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	136666	NM_021813	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
14.3297-2	chr13	81690590	81691089	+	0	NA	Intergenic	Intergenic	98313	NR_125770	103724386	Hs.539622	NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
15.3462-2	chr15	86086939	86087438	+	0	NA	intron (NM_007200, intron 5 of 36)	intron (NM_007200, intron 5 of 36)	-75993	NM_001270546	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
25.986	chrX	6686810	6687309	+	0	NA	Intergenic	Intergenic	-233900	NM_016379	51481	Hs.170076	NM_016379	ENSG00000169059	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge, X-linked 3A	protein-coding
36.8825	chr4	11456863	11457362	+	0	NA	Intergenic	Intergenic	-26575	NM_005114	9957	Hs.507348	NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
16.4207	chr3	95473180	95473679	+	0	NA	Intergenic	Intergenic	-71392	NR_077228	100287639	Hs.591320	NR_077228	ENSG00000244681	MTHFD2P1	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudo
23.7986	chr1	40342755	40343254	+	0	NA	intron (NM_001312691, intron 1 of 9)	FLAM_C|SINE|Alu	6179	NR_132406	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
13.8405	chr1	50576294	50576793	+	0	NA	intron (NM_001324215, intron 1 of 5)	intron (NM_001324215, intron 1 of 5)	1255	NM_001324213	1996	Hs.213050	NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
16.4397	chr2	150741819	150742318	+	0	NA	Intergenic	Intergenic	-297738	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria and homocystinuria, cblD type	protein-coding
19.2445	chr2	160177683	160178182	+	0	NA	intron (NM_001329857, intron 36 of 36)	L1MA2|LINE|L1	-34622	NM_001330278	151525	Hs.20848	NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
13.8828	chr2	2295313	2295812	+	0	NA	intron (NM_001329851, intron 1 of 23)	intron (NM_001329851, intron 1 of 23)	-27442	NR_024468	730811	Hs.629472	NR_024468	ENSG00000225619	MYT1L-AS1	-	MYT1L antisense RNA 1	ncRNA
22.4185-4	chr5	173509167	173509666	+	0	NA	intron (NM_015980, intron 3 of 4)	intron (NM_015980, intron 3 of 4)	36809	NM_015980	51617	Hs.559412	NM_015980	ENSG00000170091	HMP19	-	HMP19 protein	protein-coding
14.7108-4	chr3	177239042	177239541	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	79582	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
42.3582	chr6	131972874	131973373	+	0	NA	intron (NM_005021, intron 3 of 24)	intron (NM_005021, intron 3 of 24)	14748	NR_133007	5169	Hs.486489	NM_005021	ENSG00000154269	ENPP3	B10|CD203c|NPP3|PD-IBETA|PDNP3	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding
14.8678	chr14	62026835	62027334	+	0	NA	intron (NR_110417, intron 3 of 3)	intron (NR_110417, intron 3 of 3)	9828	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
20.0922	chr12	19426758	19427257	+	0	NA	intron (NM_001256470, intron 10 of 31)	MamRep605|Unknown|Unknown	68748	NM_001256787	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
26.038	chr12	13880627	13881126	+	0	NA	intron (NM_000834, intron 3 of 12)	intron (NM_000834, intron 3 of 12)	252146	NM_000834	2904	Hs.504844	NM_000834	ENSG00000273079	GRIN2B	EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate ionotropic receptor NMDA type subunit 2B	protein-coding
18.7615	chr14	46416883	46417382	+	0	NA	Intergenic	Intergenic	-116230	NR_102702	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
14.2251-2	chr5	152502419	152502918	+	0	NA	Intergenic	Intergenic	-150759	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
20.1863	chr1	40264773	40265272	+	0	NA	Intergenic	Intergenic	10374	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
24.2136	chr6	26706150	26706649	+	0	NA	Intergenic	L1MEf|LINE|L1	-46419	NM_024639	79692	Hs.126280	NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
24.5346	chr8	107457056	107457555	+	0	NA	intron (NM_001198533, intron 2 of 16)	intron (NM_001198533, intron 2 of 16)	-2847	NM_001198532	55074	Hs.127286	NM_018002	ENSG00000164830	OXR1	Nbla00307|TLDC3	oxidation resistance 1	protein-coding
13.279-2	chr16	89509721	89510220	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	12644	NR_110932	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
15.0864	chr11	33497430	33497929	+	0	NA	Intergenic	Intergenic	-66198	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
15.8838	chr9	79277366	79277865	+	0	NA	intron (NM_001308047, intron 9 of 17)	intron (NM_001308047, intron 9 of 17)	29716	NM_001308051	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding
23.5556	chr7	155970066	155970565	+	0	NA	Intergenic	Intergenic	214989	NM_001291913	389602	Hs.583071	NM_001291913		LOC389602	-	uncharacterized LOC389602	protein-coding
24.7108	chr18	8301368	8301867	+	0	NA	intron (NM_001105244, intron 20 of 32)	L2a|LINE|L2	65415	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
21.5181	chr11	112263870	112264369	+	0	NA	Intergenic	Intergenic	-88836	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
15.0724	chr5	1168146	1168645	+	0	NA	Intergenic	L1M5|LINE|L1	10325	NR_109911	101928857	Hs.593732	NR_109911	ENSG00000249201	CTD-3080P12.3	-	uncharacterized LOC101928857	ncRNA
13.9686-2	chr1	29816781	29817280	+	0	NA	Intergenic	Intergenic	-140404	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LINC01756	-	long intergenic non-protein coding RNA 1756	ncRNA
18.6967	chr13	80825472	80825971	+	0	NA	Intergenic	Intergenic	88073	NM_001318538	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
21.4874	chr7	146995598	146996097	+	0	NA	intron (NM_014141, intron 8 of 23)	MER58B|DNA|hAT-Charlie	79366	NR_031645	100313895		NR_031645	ENSG00000221442	MIR548F4	MIR548F-4|MIRN548F4|hsa-mir-548f-4	microRNA 548f-4	ncRNA
13.8091	chr20	35101107	35101606	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	11170	NM_183006	22839	Hs.249600	NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
17.0115	chr5	12323753	12324252	+	0	NA	Intergenic	LTR9|LTR|ERV1	-250967	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
15.4668	chr6	81041639	81042138	+	0	NA	intron (NR_134945, intron 10 of 10)	intron (NR_134945, intron 10 of 10)	225561	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
13.6856	chr17	21189611	21190110	+	0	NA	intron (NM_145109, intron 1 of 11)	intron (NM_145109, intron 1 of 11)	-1488	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
22.8316	chr2	205130286	205131011	+	0	NA	Intergenic	Intergenic	-279868	NM_001302769	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
33.9147	chr5	58612928	58613427	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	39550	NM_001197219	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
22.4185-2	chr14	32799833	32800332	+	0	NA	intron (NM_004274, intron 1 of 13)	intron (NM_004274, intron 1 of 13)	1603	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
24.7625	chr5	66943857	66944356	+	0	NA	Intergenic	Intergenic	-144935	NR_130779	101928858	Hs.334066	NR_130779	ENSG00000249364	LOC101928858	-	uncharacterized LOC101928858	ncRNA
13.7572-3	chr13	80912841	80913340	+	0	NA	5' UTR (NM_001318538, exon 1 of 2)	5' UTR (NM_001318538, exon 1 of 2)	704	NM_001318538	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
16.3451-2	chr8	130984424	130984923	+	0	NA	intron (NR_046360, intron 1 of 14)	AluJo|SINE|Alu	-32522	NM_001330612	51571	Hs.126941	NM_016623	ENSG00000153310	FAM49B	BM-009|L1	family with sequence similarity 49 member B	protein-coding
17.9317	chr2	142465029	142465528	+	0	NA	intron (NM_018557, intron 2 of 90)	intron (NM_018557, intron 2 of 90)	423992	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
15.867	chr11	126727633	126728132	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-82760	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
13.2331-2	chr2	99520461	99520960	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	31974	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
39.2082	chr3	193461754	193462253	+	0	NA	Intergenic	Intergenic	-116882	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
16.9465-3	chr9	36867933	36868432	+	0	NA	intron (NM_001280549, intron 6 of 7)	intron (NM_001280549, intron 6 of 7)	-3877	NR_039766	100616278		NR_039766	ENSG00000264922	MIR4540	-	microRNA 4540	ncRNA
24.7756	chr17	55129229	55129728	+	0	NA	Intergenic	Intergenic	6639	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
20.1144	chr18	67068962	67069461	+	0	NA	intron (NM_152721, intron 1 of 7)	intron (NM_152721, intron 1 of 7)	927	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
62.6043	chr2	199564998	199565497	+	0	NA	Intergenic	Intergenic	-325426	NR_110267	101927619	Hs.632942	NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
18.6646-3	chr2	112134900	112135399	+	0	NA	intron (NR_136166, intron 1 of 4)	intron (NR_136166, intron 1 of 4)	-56481	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
14.1005	chr11	17035657	17036156	+	0	NA	promoter-TSS (NM_175058)	promoter-TSS (NM_175058)	57	NM_001329631	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
20.4239	chr10	73565717	73566216	+	0	NA	exon (NM_022124, exon 55 of 68)	exon (NM_022124, exon 55 of 68)	-5674	NM_001171936	64072	Hs.656032	NM_022124	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin related 23	protein-coding
13.4775	chr4	36245508	36246442	+	0	NA	promoter-TSS (NM_015230)	promoter-TSS (NM_015230)	4	NM_015230	116984	Hs.479451	NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
17.167-3	chr2	229948289	229948788	+	0	NA	intron (NM_001330157, intron 1 of 1)	intron (NM_001330157, intron 1 of 1)	148270	NM_001330156	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
17.5945	chr8	6578082	6578581	+	0	NA	intron (NM_018361, intron 1 of 7)	intron (NM_018361, intron 1 of 7)	12453	NM_018361	55326	Hs.624002	NM_018361	ENSG00000155189	AGPAT5	1AGPAT5|LPAATE	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
37.0997	chr17	68657337	68657836	+	0	NA	Intergenic	Intergenic	491910	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium voltage-gated channel subfamily J member 2	protein-coding
17.9317-4	chr16	54227482	54227981	+	0	NA	Intergenic	Intergenic	77060	NR_126340	100996338	Hs.232014	NR_126340		LOC100996338	-	uncharacterized LOC100996338	ncRNA
16.0033-4	chr18	74695102	74695601	+	0	NA	intron (NM_002385, intron 5 of 5)	intron (NM_002385, intron 5 of 5)	33704	NM_001025081	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
19.0309-2	chr18	74331529	74332028	+	0	NA	promoter-TSS (NR_120419)	promoter-TSS (NR_120419)	44	NR_120419	400660	Hs.131718	NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
20.2319	chr8	126736979	126737478	+	0	NA	Intergenic	L2a|LINE|L2	226213	NR_038446	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
17.8252-2	chr18	54305704	54306203	+	0	NA	promoter-TSS (NM_004786)	promoter-TSS (NM_004786)	-33	NM_004786	9352	Hs.114412	NM_004786	ENSG00000091164	TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin like 1	protein-coding
16.0033-6	chr5	6900877	6901376	+	0	NA	Intergenic	Intergenic	-73092	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
40.5601	chr2	232112776	232113275	+	0	NA	intron (NM_001271466, intron 8 of 24)	intron (NM_001271466, intron 8 of 24)	42112	NM_001271466	80210	Hs.162411	NM_025139	ENSG00000135931	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
13.8091-4	chr1	224622265	224622764	+	0	NA	promoter-TSS (NM_001322302)	promoter-TSS (NM_001322302)	-83	NM_001322302	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
17.7211-2	chr9	94660727	94661226	+	0	NA	intron (NM_004560, intron 1 of 8)	intron (NM_004560, intron 1 of 8)	51468	NM_004560	4920	Hs.98255	NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
22.66	chr8	81064217	81064716	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	18969	NR_105036	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
16.9897	chr6	90797609	90798108	+	0	NA	intron (NM_021813, intron 5 of 8)	L1MA1|LINE|L1	193670	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
15.4821-2	chr2	28939133	28939632	+	0	NA	Intergenic	Intergenic	-35232	NM_206876	5500	Hs.702907	NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1 catalytic subunit beta	protein-coding
39.1009	chr11	91680215	91680714	+	0	NA	Intergenic	Intergenic	-404798	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding
29.9568-2	chr18	43003653	43004152	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	83099	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
15.3462	chr3	99787597	99788096	+	0	NA	intron (NM_001042459, intron 1 of 4)	intron (NM_001042459, intron 1 of 4)	45511	NM_001042459	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
14.437-4	chr2	219858502	219859001	+	0	NA	promoter-TSS (NM_057094)	promoter-TSS (NM_057094)	-624	NM_057093	1412	Hs.415790	NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
19.5468-2	chr14	68816546	68817045	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	278709	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
15.9007-3	chr2	121943206	121943705	+	0	NA	Intergenic	Intergenic	99323	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
15.8004-3	chr2	211760247	211760746	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	278201	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
36.8825-2	chr16	81652198	81652697	+	0	NA	intron (NM_030629, intron 2 of 20)	MIR|SINE|MIR	7494	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
16.925	chr17	6455177	6455676	+	0	NA	intron (NM_001165966, intron 1 of 18)	intron (NM_001165966, intron 1 of 18)	4451	NM_001165966	83394	Hs.183983	NM_031220	ENSG00000091622	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
14.9894-5	chr2	52021579	52022078	+	0	NA	intron (NR_135237, intron 6 of 10)	L1PB1|LINE|L1	-575958	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA
16.6354	chr8	97591023	97591522	+	0	NA	intron (NM_002998, intron 1 of 4)	intron (NM_002998, intron 1 of 4)	-66183	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
29.1009-3	chr18	60828912	60829411	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	157452	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
14.6092	chr18	3595416	3595915	+	0	NA	intron (NR_024101, intron 2 of 2)	intron (NR_024101, intron 2 of 2)	1553	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
13.6856-3	chr9	38018876	38019375	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	50085	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
13.3255-8	chr6	37664648	37665147	+	0	NA	5' UTR (NM_153487, exon 1 of 17)	5' UTR (NM_153487, exon 1 of 17)	869	NM_153487	266727	Hs.437993	NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
63.7572	chr5	125055539	125056038	+	0	NA	Intergenic	Intergenic	226834	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
25.2143-2	chr3	182002515	182003014	+	0	NA	Intergenic	Intergenic	201386	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
22.6043	chr2	162291052	162291551	+	0	NA	Intergenic	L1PA15|LINE|L1	18696	NM_006593	10716	Hs.210862	NM_006593	ENSG00000136535	TBR1	TBR-1|TES-56	T-box, brain 1	protein-coding
13.6552	chr10	17925619	17926118	+	0	NA	intron (NM_002438, intron 4 of 29)	intron (NM_002438, intron 4 of 29)	38761	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
19.0309-3	chr1	75808406	75808905	+	0	NA	intron (NM_001320283, intron 1 of 21)	intron (NM_001320283, intron 1 of 21)	208088	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
54.1229	chr8	94858794	94859293	+	0	NA	Intergenic	Intergenic	69304	NR_039602	100616169		NR_039602	ENSG00000264448	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
14.1794	chr11	128414499	128414998	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	18711	NR_120581	101929517	Hs.562320	NR_120581	ENSG00000254588	LOC101929517	-	uncharacterized LOC101929517	ncRNA
16.7366-2	chr14	85507915	85508414	+	0	NA	Intergenic	Intergenic	-345455	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
13.9147-2	chr2	59476520	59477019	+	0	NA	intron (NR_110219, intron 1 of 2)	intron (NR_110219, intron 1 of 2)	31926	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
24.6344	chr8	95961461	95961960	+	0	NA	promoter-TSS (NM_033285)	promoter-TSS (NM_033285)	-95	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
19.1009	chr1	151812074	151812573	+	0	NA	intron (NM_001136003, intron 1 of 1)	CpG	710	NM_001136003	100191040	Hs.694717	NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding
17.5696	chr12	16183465	16183964	+	0	NA	intron (NM_015954, intron 6 of 8)	L2a|LINE|L2	119608	NM_015954	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
17.2125-2	chr8	94573515	94574014	+	0	NA	intron (NR_033858, intron 6 of 10)	intron (NR_033858, intron 6 of 10)	138897	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
15.5284-2	chr8	75896583	75897082	+	0	NA	5' UTR (NM_031461, exon 1 of 15)	5' UTR (NM_031461, exon 1 of 15)	124	NM_031461	83690	Hs.436542	NM_031461	ENSG00000121005	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine rich secretory protein LCCL domain containing 1	protein-coding
22.4795	chr2	224425433	224425932	+	0	NA	Intergenic	Intergenic	41535	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
14.7108-2	chr2	171733045	171733544	+	0	NA	Intergenic	L3|LINE|CR1	-51654	NM_001201428	26003	Hs.431317	NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
32.8067-4	chr8	143371973	143372472	+	0	NA	intron (NM_001291931, intron 8 of 10)	intron (NM_001291931, intron 8 of 10)	92505	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
15.1713	chr5	40676618	40677117	+	0	NA	Intergenic	Intergenic	-3165	NM_000958	5734	Hs.199248	NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
17.2125-6	chr7	31815095	31815594	+	0	NA	exon (NM_001322055, exon 18 of 19)	exon (NM_001322055, exon 18 of 19)	88713	NM_006658	10842	Hs.227011	NM_006658	ENSG00000106341	PPP1R17	C7orf16|GSBS	protein phosphatase 1 regulatory subunit 17	protein-coding
14.2829-2	chr11	67349979	67350478	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-838	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
24.7496	chr17	65668794	65669293	+	0	NA	intron (NM_181671, intron 7 of 9)	intron (NM_181671, intron 7 of 9)	-44906	NM_015462	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
16.4782-2	chr18	70359671	70360170	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-148197	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
13.7263	chr4	30838673	30839172	+	0	NA	intron (NM_032457, intron 1 of 2)	intron (NM_032457, intron 1 of 2)	116885	NM_032457	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
20.0524	chr9	27426524	27427023	+	0	NA	intron (NM_024761, intron 2 of 3)	intron (NM_024761, intron 2 of 3)	-97539	NM_020124	56832	Hs.591083	NM_020124	ENSG00000147896	IFNK	IFNT1|INFE1	interferon kappa	protein-coding
18.6646-4	chr21	31475072	31475571	+	0	NA	Intergenic	Intergenic	63650	NM_012131	26285	Hs.258589	NM_012131	ENSG00000156282	CLDN17	-	claudin 17	protein-coding
13.439	chr5	34616679	34617178	+	0	NA	Intergenic	Intergenic	-39505	NM_001145522	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
17.167-4	chr6	138038476	138038975	+	0	NA	Intergenic	Intergenic	21449	NR_121619	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
65.9176-2	chr5	6545783	6546282	+	0	NA	Intergenic	MER87B|LTR|ERV1	-36217	NR_024423	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
13.3724-5	chr5	6466804	6467303	+	0	NA	intron (NM_001145161, intron 1 of 1)	intron (NM_001145161, intron 1 of 1)	18317	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
30.6854	chr18	47931068	47931567	+	0	NA	Intergenic	LTR5B|LTR|ERVK	29925	NM_001039535	220134	Hs.134726	NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
32.3882	chr2	234369492	234369991	+	0	NA	intron (NM_003648, intron 23 of 28)	intron (NM_003648, intron 23 of 28)	72941	NM_003648	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
14.7366	chr6	168732642	168733141	+	0	NA	Intergenic	Intergenic	-12457	NM_001286351	168002	Hs.673059	NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
20.9098-2	chr13	113292666	113293165	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-8443	NM_207440	400165	Hs.591213	NM_207440		ATP11AUN	C13orf35|SMABLO1	ATP11A upstream neighbor	protein-coding
15.0031	chr1	65573981	65574480	+	0	NA	Intergenic	L2|LINE|L2	-39002	NM_203464	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
20.7007	chr8	109611614	109612113	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	156051	NM_001329495	9694	Hs.654351	NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
27.1897	chr1	144987716	144988215	+	0	NA	intron (NM_001002810, intron 1 of 3)	intron (NM_001002810, intron 1 of 3)	7068	NM_001002810	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
20.1863-2	chr1	229645249	229645748	+	0	NA	intron (NR_110630, intron 1 of 2)	intron (NR_110630, intron 1 of 2)	1321	NR_110630	101927478	Hs.229275	NR_110630		LOC101927478	-	uncharacterized LOC101927478	ncRNA
66.0555	chr11	20783574	20784073	+	0	NA	intron (NM_201551, intron 2 of 18)	intron (NM_201551, intron 2 of 18)	92726	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
14.0561-3	chr8	98877797	98878296	+	0	NA	Intergenic	Intergenic	-3203	NM_030583	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
19.2812-2	chr3	151487778	151488277	+	0	NA	promoter-TSS (NR_026915)	promoter-TSS (NR_026915)	-217	NR_026915	201651	Hs.383050	NR_026915	ENSG00000240602	AADACP1	-	arylacetamide deacetylase pseudogene 1	pseudo
18.0134-2	chr1	206878435	206878934	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	20319	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
17.0997	chr2	48812852	48813351	+	0	NA	intron (NM_001198594, intron 1 of 7)	intron (NM_001198594, intron 1 of 7)	5375	NM_001198594	286749	Hs.732016	NM_172311	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
62.4949	chr1	216604654	216605153	+	0	NA	Intergenic	Intergenic	-8165	NM_206933	7399	Hs.655974	NM_007123	ENSG00000042781	USH2A	RP39|US2|USH2|dJ1111A8.1	usherin	protein-coding
22.5259	chr7	157644359	157644858	+	0	NA	intron (NM_130843, intron 11 of 21)	intron (NM_130843, intron 11 of 21)	-2669	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
65.391	chr4	113987256	113987755	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	16720	NM_020977	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
18.0967	chr16	19707517	19708016	+	0	NA	intron (NM_001300743, intron 26 of 27)	intron (NM_001300743, intron 26 of 27)	-20012	NR_130967	124152	Hs.460217	NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
32.5727	chrX	117200767	117201266	+	0	NA	intron (NM_001168301, intron 1 of 7)	Tigger3b|DNA|TcMar-Tigger	49812	NM_001168303	90293	Hs.348262	NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
13.3819	chr1	246158619	246159118	+	0	NA	intron (NM_001167740, intron 5 of 11)	MamGypLTR1d|LTR|Gypsy	421846	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
65.9176	chr7	50619549	50620048	+	0	NA	intron (NM_001082971, intron 1 of 14)	intron (NM_001082971, intron 1 of 14)	8970	NM_001242890	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
15.9688-3	chr11	114298476	114298975	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-11383	NM_015523	25996	Hs.677190	NM_015523	ENSG00000076043	REXO2	CGI-114|REX2|RFN|SFN	RNA exonuclease 2	protein-coding
15.7187	chr7	95688227	95688726	+	0	NA	intron (NM_001278422, intron 13 of 15)	MER82|DNA|TcMar-Tigger	160592	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
13.7161	chr6	142508329	142508828	+	0	NA	intron (NM_016485, intron 4 of 7)	intron (NM_016485, intron 4 of 7)	40279	NM_001286371	51534	Hs.431367	NM_016485	ENSG00000009844	VTA1	C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
inf	Chr	1	End	+	0	NA	NA	NA	NA	NA								
16.1979-2	chr6	21202095	21202594	+	0	NA	intron (NM_017774, intron 15 of 15)	intron (NM_017774, intron 15 of 15)	309779	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
58.1248	chr1	40420516	40421015	+	0	NA	promoter-TSS (NM_001136493)	promoter-TSS (NM_001136493)	-19	NM_001287808	84879	Hs.655177	NM_032793	ENSG00000168389	MFSD2A	MCPH15|MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
14.908	chr7	158118641	158119140	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	206615	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
24.6344-2	chr6	107150254	107150753	+	0	NA	Intergenic	Intergenic	-72137	NM_001318746	84816	Hs.155839	NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
13.6251	chr9	27371404	27371903	+	0	NA	intron (NM_024761, intron 2 of 3)	MER102c|DNA|hAT-Charlie	-74516	NM_020641	54586	Hs.163070	NM_020641	ENSG00000120160	EQTN	AFAF|C9orf11|SPACA8	equatorin	protein-coding
13.439-2	chr2	65710041	65710540	+	0	NA	Intergenic	L1ME1|LINE|L1	-50634	NM_181784	200734	Hs.59332	NM_181784	ENSG00000198369	SPRED2	Spred-2	sprouty related EVH1 domain containing 2	protein-coding
22.5571	chr18	55416056	55416555	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	54022	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
15.6384	chr1	212121051	212121550	+	0	NA	intron (NM_001199811, intron 17 of 19)	LTR22B|LTR|ERVK	-87595	NM_016448	51514	Hs.656473	NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
43.1069-2	chr2	40469407	40469906	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	187788	NM_001252624	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
20.278	chr12	116322782	116323281	+	0	NA	Intergenic	Intergenic	263428	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
16.6756-3	chr20	35874136	35874635	+	0	NA	Intergenic	Intergenic	10926	NM_021081	2691	Hs.37023	NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
13.9686-3	chr10	80787427	80787926	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	39529	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
25.3462	chr13	112133414	112133913	+	0	NA	Intergenic	Intergenic	-114693	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
14.698	chr14	90771655	90772154	+	0	NA	intron (NM_017970, intron 4 of 13)	L1ME2z|LINE|L1	26577	NM_017970	55051	Hs.528131	NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
22.815-2	chr6	93609862	93610361	+	0	NA	Intergenic	Intergenic	519189	NM_001288630	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
38.3565	chr2	69026635	69027134	+	0	NA	intron (NM_014882, intron 3 of 9)	intron (NM_014882, intron 3 of 9)	24951	NM_001166276	9938	Hs.531807	NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
22.5259-2	chr7	138574698	138575197	+	0	NA	intron (NM_020910, intron 10 of 19)	intron (NM_020910, intron 10 of 19)	91117	NM_001164665	57670	Hs.605380	NM_020910	ENSG00000122778	KIAA1549	-	KIAA1549	protein-coding
16.7778-3	chr9	79339949	79340448	+	0	NA	intron (NM_001308047, intron 6 of 17)	intron (NM_001308047, intron 6 of 17)	-32867	NM_001330680	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding
23.9147	chr3	187526537	187527036	+	0	NA	Intergenic	Intergenic	-63273	NM_001706	604	Hs.478588	NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	B-cell CLL/lymphoma 6	protein-coding
16.0033	chr8	134202113	134202612	+	0	NA	promoter-TSS (NM_080838)	promoter-TSS (NM_080838)	-920	NM_001204870	8840	Hs.492974	NM_003882	ENSG00000104415	WISP1	CCN4|WISP1c|WISP1i|WISP1tc	WNT1 inducible signaling pathway protein 1	protein-coding
13.279-4	chr16	52028353	52028852	+	0	NA	Intergenic	Intergenic	79245	NM_001242473	388276	Hs.534669	NM_001242473		C16orf97	-	chromosome 16 open reading frame 97	protein-coding
30.6803	chr3	150469628	150470127	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	11386	NM_005067	6478	Hs.477959	NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
13.9903-2	chr5	146024716	146025215	+	0	NA	intron (NM_181675, intron 6 of 9)	intron (NM_181675, intron 6 of 9)	-129289	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
41.2784	chr8	141809091	141809590	+	0	NA	intron (NM_001316342, intron 10 of 32)	intron (NM_001316342, intron 10 of 32)	-163694	NM_001164623	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
14.9757	chr12	683878	684377	+	0	NA	intron (NM_016533, intron 1 of 3)	MIRc|SINE|MIR	11525	NR_134624	105369595	Hs.504422	NR_134624		LOC105369595	-	uncharacterized LOC105369595	ncRNA
13.0715	chr15	83349327	83349826	+	0	NA	intron (NM_001278512, intron 7 of 26)	CpG-8192	29084	NM_001278511	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	adaptor related protein complex 3 beta 2 subunit	protein-coding
23.6151	chr15	57798067	57798566	+	0	NA	intron (NM_001252335, intron 9 of 19)	intron (NM_001252335, intron 9 of 19)	-85786	NM_001018091	145781	Hs.437256	NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
30.07	chr12	6179981	6180480	+	0	NA	intron (NM_000552, intron 10 of 51)	intron (NM_000552, intron 10 of 51)	53611	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
16.3078-2	chr1	173159427	173160140	+	0	NA	intron (NM_003326, intron 1 of 2)	intron (NM_003326, intron 1 of 2)	14914	NM_001297562	7292	Hs.181097	NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	tumor necrosis factor superfamily member 4	protein-coding
22.668	chr3	156343838	156344337	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-48118	NM_015508	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
32.7165	chr18	47088068	47088567	+	0	NA	promoter-TSS (NM_001308006)	promoter-TSS (NM_001308006)	-84	NM_006033	9388	Hs.465102	NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
21.1805	chr18	24507693	24508192	+	0	NA	intron (NR_026908, intron 4 of 7)	LTR5_Hs|LTR|ERVK	-62134	NM_001317387	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	MIWC|WCH4	aquaporin 4	protein-coding
14.8945	chr2	9949075	9949574	+	0	NA	Intergenic	Intergenic	-34247	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
19.1009-2	chrX	7607968	7608467	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-202086	NM_013452	26609	Hs.278906	NM_013452	ENSG00000182583	VCX	VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1	variable charge, X-linked	protein-coding
18.8606	chr6	3380843	3381342	+	0	NA	intron (NM_001286456, intron 3 of 3)	MLT1I|LTR|ERVL-MaLR	64155	NM_001286455	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
20.3152	chr3	97439109	97439608	+	0	NA	intron (NM_001080448, intron 15 of 17)	intron (NM_001080448, intron 15 of 17)	-44007	NR_103511	84100	Hs.373801	NM_032146	ENSG00000113966	ARL6	BBS3|RP55	ADP ribosylation factor like GTPase 6	protein-coding
15.0307-4	chr5	70681940	70682439	+	0	NA	TTS (NR_003922)	TTS (NR_003922)	10577	NR_003922	5370	Hs.742169	NM_031888	ENSG00000169040	PMCHL2	-	pro-melanin concentrating hormone like 2 (pseudogene)	pseudo
71.1577-2	chr18	21578683	21579182	+	0	NA	intron (NR_110796, intron 5 of 5)	intron (NR_110796, intron 5 of 5)	6195	NM_153211	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
62.8988	chr6	99104514	99105013	+	0	NA	Intergenic	Intergenic	-177817	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
20.8619-2	chr14	75667092	75667591	+	0	NA	Intergenic	L2b|LINE|L2	-23992	NM_006827	10972	Hs.74137	NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
15.6864-3	chr7	38898202	38898701	+	0	NA	intron (NM_014396, intron 4 of 28)	Tigger3b|DNA|TcMar-Tigger	50349	NM_014396	27072	Hs.592184	NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|hVps41p	VPS41, HOPS complex subunit	protein-coding
20.4818	chr9	80716050	80716549	+	0	NA	Intergenic	Intergenic	-69934	NM_002072	2776	Hs.269782	NM_002072	ENSG00000156052	GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
19.2812	chr5	126851268	126851767	+	0	NA	Intergenic	L2a|LINE|L2	-1784	NM_130809	133619	Hs.483259	NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
51.6304	chr7	33037858	33038357	+	0	NA	intron (NM_001284341, intron 8 of 10)	intron (NM_001284341, intron 8 of 10)	19021	NM_001284343	11328	Hs.103934	NM_007270	ENSG00000122642	FKBP9	FKBP60|FKBP63|PPIase	FK506 binding protein 9	protein-coding
14.0561-2	chr5	1050469	1050968	+	0	NA	3' UTR (NM_006598, exon 24 of 24)	3' UTR (NM_006598, exon 24 of 24)	12371	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
27.4232	chr8	18037026	18037525	+	0	NA	intron (NM_001291962, intron 2 of 5)	intron (NM_001291962, intron 2 of 5)	9304	NM_001291962	9	Hs.591847	NM_000662	ENSG00000171428	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1	protein-coding
15.0724-2	chr12	58246301	58246800	+	0	NA	Intergenic	Intergenic	-5803	NM_005730	10106	Hs.524530	NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
18.1248-2	chr9	76457298	76457797	+	0	NA	Intergenic	Intergenic	-528900	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
15.6067	chr18	54540916	54541415	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	198185	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
19.2812-4	chr12	3669157	3669656	+	0	NA	intron (NM_001256536, intron 4 of 9)	intron (NM_001256536, intron 4 of 9)	-67421	NR_126055	100129223	Hs.586788	NR_126055		THCAT155	-	thyroid cancer-associated transcript 155	ncRNA
25.3018	chr4	65732319	65732818	+	0	NA	Intergenic	Intergenic	137650	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
20.5502	chr2	209421122	209421621	+	0	NA	intron (NR_136588, intron 1 of 5)	L1PA16|LINE|L1	14004	NR_136588	101927960	Hs.159960	NR_136588		LOC101927960	-	uncharacterized LOC101927960	ncRNA
26.0033	chr13	100563721	100564220	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	45449	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA
16.0555	chr18	54875167	54875666	+	0	NA	Intergenic	Intergenic	61123	NM_001257964	284257	Hs.127882	NM_001257964	ENSG00000228075	BOD1L2	BOD1P|FAM44C	biorientation of chromosomes in cell division 1 like 2	protein-coding
13.7263-3	chr5	51335355	51335854	+	0	NA	Intergenic	Intergenic	-656438	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
16.4589-2	chr6	138504087	138505005	+	0	NA	intron (NM_020340, intron 2 of 33)	intron (NM_020340, intron 2 of 33)	21493	NM_020340	57221	Hs.194408	NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding
35.3018-2	chr1	246038211	246038710	+	0	NA	intron (NM_001167740, intron 8 of 11)	intron (NM_001167740, intron 8 of 11)	542254	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
13.7366	chr2	198478073	198478572	+	0	NA	intron (NM_144629, intron 7 of 8)	intron (NM_144629, intron 7 of 8)	62262	NM_144629	130132	Hs.591615	NM_144629	ENSG00000162944	RFTN2	C2orf11|Raftlin-2	raftlin family member 2	protein-coding
16.216-4	chr2	228636825	228637324	+	0	NA	Intergenic	Intergenic	-41484	NM_004591	6364	Hs.75498	NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
16.2893-2	chr2	99487140	99487639	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	65295	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
45.3165-2	chr3	109619517	109620016	+	0	NA	Intergenic	Intergenic	298091	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
23.3068-3	chr1	85695312	85695811	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-28833	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
20.6905	chr9	77113220	77113719	+	0	NA	promoter-TSS (NR_125791)	promoter-TSS (NR_125791)	0	NR_125791	103752585	Hs.635501	NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA
15.0169-2	chr17	17280785	17281284	+	0	NA	Intergenic	Intergenic	74354	NM_020201	56953	Hs.513977	NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
18.4466-3	chr9	108372594	108373093	+	0	NA	intron (NM_006731, intron 6 of 9)	intron (NM_006731, intron 6 of 9)	-51895	NM_005421	6887	Hs.247978	NM_005421	ENSG00000186051	TAL2	-	TAL bHLH transcription factor 2	protein-coding
18.3863	chr13	95600092	95600591	+	0	NA	Intergenic	Intergenic	-11954	NR_047487	100861544	Hs.48706	NR_047487	ENSG00000260962	LINC00557	-	long intergenic non-protein coding RNA 557	ncRNA
13.5952-4	chr21	43737467	43737966	+	0	NA	Intergenic	Intergenic	-2010	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
13.0277	chr18	67953535	67954034	+	0	NA	Intergenic	Intergenic	-2353	NM_004232	9306	Hs.44439	NM_004232	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
14.2022	chr1	226189643	226190142	+	0	NA	Intergenic	Intergenic	-2826	NM_152608	163859	Hs.520192	NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
18.7615-2	chr12	103591539	103592038	+	0	NA	Intergenic	L1PA15|LINE|L1	46168	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA
27.3755-3	chr18	76760874	76761373	+	0	NA	Intergenic	Intergenic	20848	NM_171999	27164	Hs.700557	NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
21.8442	chr3	159168784	159169283	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	168598	NR_037483	100500803		NR_037483	ENSG00000263634	MIR3919	-	microRNA 3919	ncRNA
21.7134	chr5	111910143	111910642	+	0	NA	Intergenic	Intergenic	-53741	NR_104672	102467214	Hs.124613	NR_104672		LOC102467214	-	uncharacterized LOC102467214	ncRNA
19.5861-3	chr8	22274179	22274678	+	0	NA	intron (NM_001135153, intron 7 of 8)	MIR|SINE|MIR	-24055	NM_001243975	5533	Hs.731683	NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
16.4589	chr11	66335808	66336307	+	0	NA	promoter-TSS (NM_003793)	promoter-TSS (NM_003793)	-10	NM_003793	8722	Hs.11590	NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
15.8838-2	chr11	76155338	76155837	+	0	NA	promoter-TSS (NM_020193)	promoter-TSS (NM_020193)	-482	NM_001300944	56946	Hs.352588	NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY, BRCA2 interacting transcriptional repressor	protein-coding
17.0553	chr10	123993849	123994348	+	0	NA	intron (NM_206862, intron 16 of 22)	intron (NM_206862, intron 16 of 22)	-36713	NM_001318189	118663	Hs.422466	NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
19.3181	chr7	121471825	121472324	+	0	NA	Intergenic	Intergenic	-41085	NM_001206839	5803	Hs.489824	NM_002851	ENSG00000106278	PTPRZ1	HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan	protein tyrosine phosphatase, receptor type Z1	protein-coding
18.1531-4	chrX	14369989	14370488	+	0	NA	Intergenic	Intergenic	107851	NR_110506	286480	Hs.567831	NR_110506		UBE2E4P	UbcM2	ubiquitin conjugating enzyme E2 E4 pseudogene	pseudo
15.391-2	chr1	40226225	40227115	+	0	NA	intron (NM_001720, intron 6 of 6)	intron (NM_001720, intron 6 of 6)	10350	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
14.2251-4	chr22	47447569	47448068	+	0	NA	intron (NR_104292, intron 12 of 13)	intron (NR_104292, intron 12 of 13)	-135880	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
20.9854-3	chr6	112306278	112306777	+	0	NA	Intergenic	Intergenic	-68751	NR_125354	8838	Hs.558428	NM_003880	ENSG00000112761	WISP3	CCN6|LIBC|PPAC|PPD|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding
17.2584-2	chr7	154181474	154181973	+	0	NA	intron (NM_001936, intron 3 of 25)	intron (NM_001936, intron 3 of 25)	179426	NM_001290252	1804	Hs.490684	NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
39.7469	chr5	1555327	1555826	+	0	NA	Intergenic	Intergenic	-31484	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
32.7165-2	chr1	40439065	40439564	+	0	NA	Intergenic	Intergenic	18530	NR_109896	84879	Hs.655177	NM_032793	ENSG00000168389	MFSD2A	MCPH15|MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
32.8067-2	chr6	41256122	41256621	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-1888	NM_001242590	54210	Hs.283022	NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
14.2022-2	chr7	3615272	3615771	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	274441	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
17.2125-3	chr7	23719421	23720356	+	0	NA	exon (NM_001127364, exon 1 of 6)	exon (NM_001127364, exon 1 of 6)	155	NM_001127364	340277	Hs.592178	NM_199136	ENSG00000188732	FAM221A	C7orf46	family with sequence similarity 221 member A	protein-coding
18.4771-5	chr10	21448824	21449323	+	0	NA	intron (NM_001173484, intron 2 of 6)	intron (NM_001173484, intron 2 of 6)	-13585	NM_001010896	387638	Hs.664110	NM_001010896	ENSG00000204683	C10orf113	bA165O3.1	chromosome 10 open reading frame 113	protein-coding
18.8606-3	chr1	15678802	15679301	+	0	NA	intron (NM_052929, intron 18 of 30)	intron (NM_052929, intron 18 of 30)	-57340	NM_024329	79180	Hs.465374	NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
21.3906	chr3	188366617	188367116	+	0	NA	intron (NM_001167671, intron 6 of 10)	intron (NM_001167671, intron 6 of 10)	-39703	NR_029502	407020		NR_029502	ENSG00000207651	MIR28	MIRN28|hsa-mir-28|miR-28	microRNA 28	ncRNA
15.0169-3	chr8	141458534	141459033	+	0	NA	intron (NM_031466, intron 2 of 22)	intron (NM_031466, intron 2 of 22)	9078	NM_001160372	83696	Hs.654911	NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex 9	protein-coding
41.6622	chr11	15772343	15772842	+	0	NA	Intergenic	Intergenic	107161	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
20.1863-3	chr1	170588325	170588824	+	0	NA	Intergenic	Intergenic	-44739	NM_006902	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
15.157-2	chr12	12929152	12929651	+	0	NA	intron (NM_001130415, intron 1 of 1)	intron (NM_001130415, intron 1 of 1)	-9140	NM_030817	81575	Hs.23388	NM_030817	ENSG00000178878	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
23.1158	chr18	73930502	73931001	+	0	NA	Intergenic	Intergenic	95798	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
44.6725	chr8	29176479	29176978	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	29594	NM_057158	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
21.4813	chr16	84029014	84029513	+	0	NA	intron (NM_001329748, intron 8 of 11)	intron (NM_001329748, intron 8 of 11)	27026	NM_001329748	54550	Hs.140950	NM_019065	ENSG00000103154	NECAB2	EFCBP2|stip-2	N-terminal EF-hand calcium binding protein 2	protein-coding
18.0134-3	chr5	150162932	150163431	+	0	NA	intron (NM_032947, intron 1 of 1)	intron (NM_032947, intron 1 of 1)	5673	NM_032947	85027	Hs.29444	NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
17.6955	chr3	134528171	134528670	+	0	NA	intron (NM_004441, intron 1 of 15)	intron (NM_004441, intron 1 of 15)	14321	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
15.5596-2	chr13	22553551	22554050	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-101501	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
15.1145	chr10	25140488	25140987	+	0	NA	intron (NM_020200, intron 7 of 8)	intron (NM_020200, intron 7 of 8)	100836	NM_001282786	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
14.2829	chr10	106088898	106089397	+	0	NA	promoter-TSS (NM_001272012)	promoter-TSS (NM_001272012)	-397	NM_001272012	85450	Hs.523252	NM_033397	ENSG00000148841	ITPRIP	DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
46.4016	chr6	89084215	89084714	+	0	NA	Intergenic	Intergenic	164624	NR_110867	101928936	Hs.533080	NR_110867		LOC101928936	-	uncharacterized LOC101928936	ncRNA
23.7572	chr5	34010344	34010843	+	0	NA	intron (NR_037951, intron 6 of 8)	L1MA4A|LINE|L1	-2373	NM_203382	23600	Hs.508343	NM_014324	ENSG00000242110	AMACR	AMACRD|CBAS4|P504S|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
19.2812-5	chr1	232929338	232929837	+	0	NA	Intergenic	Intergenic	-11051	NM_019090	54627	Hs.160373	NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding
17.0553-6	chr2	11893457	11893956	+	0	NA	intron (NM_145693, intron 1 of 19)	intron (NM_145693, intron 1 of 19)	6984	NM_145693	23175	Hs.467740	NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
17.4958-4	chr16	73033914	73034413	+	0	NA	intron (NM_006885, intron 1 of 9)	intron (NM_006885, intron 1 of 9)	48111	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
20.7831	chr5	38758453	38758952	+	0	NA	intron (NR_109951, intron 2 of 3)	intron (NR_109951, intron 2 of 3)	-38327	NR_104631	101926904	Hs.634191	NR_104631	ENSG00000249740	LINC01265	-	long intergenic non-protein coding RNA 1265	ncRNA
24.828	chr10	121544230	121544729	+	0	NA	intron (NM_014937, intron 3 of 19)	L1MB8|LINE|L1	-34290	NM_001243194	22876	Hs.369755	NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
40.9854-2	chr4	148634383	148634882	+	0	NA	Intergenic	L1PA15|LINE|L1	-18821	NM_024605	79658	Hs.368631	NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
13.1247-2	chr13	37240605	37241104	+	0	NA	Intergenic	Intergenic	-7195	NM_203451	400120	Hs.422375	NM_203451	ENSG00000180440	SERTM1	C13orf36	serine rich and transmembrane domain containing 1	protein-coding
17.7211	chr6	56234765	56235264	+	0	NA	intron (NM_001318752, intron 1 of 28)	intron (NM_001318752, intron 1 of 28)	23912	NM_001318752	81578	Hs.47629	NM_030820	ENSG00000124749	COL21A1	COLA1L|FP633	collagen type XXI alpha 1 chain	protein-coding
17.9317-2	chr18	77550116	77550615	+	0	NA	Intergenic	Intergenic	-73303	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
16.517-2	chrUn_gl000224	297	796	+	0	NA	Intergenic	Intergenic	-101957	NR_135482	100505874	Hs.559790	NR_135481		LOC100505874	-	uncharacterized LOC100505874	ncRNA
64.2946	chr8	102614029	102614528	+	0	NA	intron (NM_001330593, intron 8 of 15)	L1PA8|LINE|L1	109610	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding
16.7366	chr11	71796917	71797416	+	0	NA	intron (NM_001145308, intron 1 of 6)	MLT1H|LTR|ERVL-MaLR	-5427	NM_001286561	4926	Hs.325978	NM_006185	ENSG00000137497	NUMA1	NMP-22|NUMA	nuclear mitotic apparatus protein 1	protein-coding
19.5468-3	chr18	51749653	51750152	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	-1120	NR_002970	677819	Hs.655869	NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
13.279	chr4	44532639	44533138	+	0	NA	Intergenic	L1PA16|LINE|L1	-82064	NM_198353	386617	Hs.479644	NM_198353	ENSG00000183783	KCTD8	-	potassium channel tetramerization domain containing 8	protein-coding
17.7728-3	chr18	29757395	29757894	+	0	NA	Intergenic	Intergenic	-12343	NM_001308171	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
27.9588	chr18	1047111	1047610	+	0	NA	Intergenic	Intergenic	142163	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
26.8825-3	chr3	193923324	193923823	+	0	NA	intron (NR_125403, intron 1 of 2)	intron (NR_125403, intron 1 of 2)	523	NR_125404	100505920	Hs.436654	NR_125403	ENSG00000225742	LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
18.6646-2	chr3	105245439	105245938	+	0	NA	intron (NM_001243280, intron 3 of 14)	intron (NM_001243280, intron 3 of 14)	160131	NM_001243283	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
16.5365-3	chrUn_gl000220	55137	55636	+	0	NA	Intergenic	Intergenic	-41743	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
13.5164-4	chrUn_gl000225	61208	61707	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
15.9688-2	chr8	102063363	102064359	+	0	NA	promoter-TSS (NR_033962)	promoter-TSS (NR_033962)	-421	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA
15.0307-5	chr18	31416494	31416993	+	0	NA	Intergenic	MER72|LTR|ERV1	211833	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
14.9894-3	chr1	193501840	193502339	+	0	NA	Intergenic	L1PA15|LINE|L1	228214	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
15.1856	chr12	115251007	115251506	+	0	NA	Intergenic	Intergenic	-129287	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
23.1247	chr1	40348729	40349228	+	0	NA	intron (NM_001312691, intron 1 of 9)	CpG	205	NR_132406	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
24.1567	chr1	184898971	184899470	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	44498	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
35.3018	chr18	55464262	55464761	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	5816	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
16.6354-2	chr11	116223142	116223641	+	0	NA	Intergenic	Intergenic	-286748	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA
32.0343	chr20	13624154	13624653	+	0	NA	Intergenic	L1PA15|LINE|L1	-4820	NR_136628	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	taspase 1	protein-coding
14.437-2	chr1	39325263	39325762	+	0	NA	promoter-TSS (NM_022157)	promoter-TSS (NM_022157)	-17	NM_022157	64121	Hs.532461	NM_022157	ENSG00000116954	RRAGC	GTR2|RAGC|TIB929	Ras related GTP binding C	protein-coding
27.0115	chr4	89922121	89922620	+	0	NA	intron (NM_014883, intron 3 of 23)	intron (NM_014883, intron 3 of 23)	55976	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
42.0761	chr18	20713803	20714302	+	0	NA	promoter-TSS (NM_001256438)	promoter-TSS (NM_001256438)	-476	NM_001256438	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19.5468	chr8	139636865	139637364	+	0	NA	intron (NM_152888, intron 51 of 64)	L2b|LINE|L2	-128049	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135 member B	protein-coding
14.2136-2	chr7	80023028	80023527	+	0	NA	Intergenic	Intergenic	-19522	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
25.3462-2	chr6	58163630	58164129	+	0	NA	Intergenic	L1MEf|LINE|L1	99328	NR_133000	375513	Hs.561539	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L	glucuronidase, beta pseudogene 4	pseudo
22.9073-2	chr18	45687499	45687998	+	0	NA	intron (NM_001318841, intron 3 of 4)	intron (NM_001318841, intron 3 of 4)	-24068	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
22.9073-3	chr11	78426671	78427170	+	0	NA	intron (NM_001098816, intron 25 of 33)	intron (NM_001098816, intron 25 of 33)	-141011	NM_001243251	79731	Hs.503389	NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
17.7989	chr4	133164493	133164992	+	0	NA	Intergenic	L1PA15|LINE|L1	-347502	NR_126401	104355285	Hs.123483	NR_126401	ENSG00000251398	LINC01256	TCONS_l2_00021715	long intergenic non-protein coding RNA 1256	ncRNA
19.5468-8	chr6	83150695	83151194	+	0	NA	Intergenic	Intergenic	76983	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
30.6148	chr18	74332939	74333748	+	0	NA	intron (NR_120419, intron 1 of 1)	intron (NR_120419, intron 1 of 1)	1609	NR_120419	400660	Hs.131718	NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
13.8616	chr8	56901376	56901875	+	0	NA	intron (NM_002350, intron 10 of 12)	intron (NM_002350, intron 10 of 12)	84835	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
14.0671	chr8	42660348	42660847	+	0	NA	Intergenic	Intergenic	-36668	NM_004198	8973	Hs.103128	NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
26.5561	chr8	73646904	73647403	+	0	NA	intron (NR_110656, intron 1 of 2)	intron (NR_110656, intron 1 of 2)	2873	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
20.8092	chr9	71939706	71940205	+	0	NA	promoter-TSS (NM_001347995)	promoter-TSS (NM_001347995)	-271	NM_001347995	9413	Hs.118003	NM_004816	ENSG00000135063	FAM189A2	C9orf61|X123	family with sequence similarity 189 member A2	protein-coding
29.1009	chr11	12824131	12824630	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	128411	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
24.7886	chr4	119288977	119289476	+	0	NA	Intergenic	Intergenic	-15304	NM_003619	8492	Hs.445857	NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine 12	protein-coding
37.5449-4	chr12	19762858	19763357	+	0	NA	Intergenic	L1PA15|LINE|L1	169592	NM_001267043	121536	Hs.126497	NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
14.9894-4	chr12	11805028	11805527	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	2489	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
14.1567-2	chr15	99408484	99408983	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	81078	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
16.7778-2	chr8	104121162	104121661	+	0	NA	Intergenic	Intergenic	-31510	NM_001024372	79870	Hs.533446	NM_024812	ENSG00000164929	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding
15.6384-2	chr18	39534871	39535370	+	0	NA	promoter-TSS (NM_002647)	promoter-TSS (NM_002647)	-43	NM_002647	5289	Hs.464971	NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
15.1004-3	chr4	40338969	40339468	+	0	NA	intron (NM_017581, intron 2 of 4)	intron (NM_017581, intron 2 of 4)	1872	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
21.1634	chr18	30355496	30355995	+	0	NA	Intergenic	Intergenic	-2771	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
14.5717	chr19	6020473	6020972	+	0	NA	TTS (NR_046376)	TTS (NR_046376)	42308	NR_046376	100128568	Hs.624525	NR_046376	ENSG00000266983	LOC100128568	-	uncharacterized LOC100128568	ncRNA
19.5861	chr6	143721443	143721942	+	0	NA	Intergenic	Intergenic	42122	NM_001286259	134637	Hs.709561	NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase, tRNA specific 2	protein-coding
14.7886	chrUn_gl000225	66669	67168	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
71.1577	chr2	230282611	230283110	+	0	NA	exon (NM_139072, exon 9 of 13)	exon (NM_139072, exon 9 of 13)	-146803	NM_001330157	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
13.9903	chr8	38592196	38592695	+	0	NA	intron (NM_001330521, intron 1 of 12)	intron (NM_001330521, intron 1 of 12)	6741	NM_001330521	6867	Hs.279245	NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
13.9147-3	chr21	40278925	40279424	+	0	NA	intron (NR_120405, intron 2 of 3)	intron (NR_120405, intron 2 of 3)	31179	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA
13.9469	chr8	102506111	102506610	+	0	NA	intron (NM_001330593, intron 1 of 15)	CpG	1692	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding
37.4958	chr18	26676011	26676510	+	0	NA	Intergenic	Intergenic	-918850	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
14.9485	chr6	53516677	53517176	+	0	NA	exon (NM_001003760, exon 3 of 3)	exon (NM_001003760, exon 3 of 3)	13580	NM_001003760	401265	Hs.131064	NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
14.8017-4	chr11	112951294	112951793	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	-117361	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
14.4009	chr2	73815162	73815661	+	0	NA	intron (NM_015120, intron 16 of 22)	intron (NM_015120, intron 16 of 22)	54126	NM_003960	9027	Hs.14637	NM_003960	ENSG00000144035	NAT8	ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510	N-acetyltransferase 8 (putative)	protein-coding
14.9894	chr1	40253282	40253781	+	0	NA	intron (NM_001720, intron 1 of 6)	intron (NM_001720, intron 1 of 6)	1002	NM_001720	656	Hs.734367	NM_001720	ENSG00000116985	BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
34.4612	chr1	188042422	188042921	+	0	NA	Intergenic	L1PA15|LINE|L1	629911	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
15.7025-2	chr18	12396347	12396846	+	0	NA	Intergenic	MamRep1527|LTR|LTR	-11299	NM_006553	10650	Hs.514718	NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
38.8273	chr18	75523386	75523885	+	0	NA	Intergenic	Intergenic	182048	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
14.6218-4	chr18	73608704	73609203	+	0	NA	Intergenic	Intergenic	-184595	NR_134646	100505853	Hs.146758	NR_134646	ENSG00000261194	LINC01898	-	long intergenic non-protein coding RNA 1898	ncRNA
32.8904	chr12	76474391	76474890	+	0	NA	intron (NM_001330231, intron 1 of 15)	MSTC|LTR|ERVL-MaLR	4173	NM_001307924	4673	Hs.524599	NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
18.962-2	chr5	34109666	34110165	+	0	NA	intron (NR_037951, intron 1 of 8)	MLT1G3|LTR|ERVL-MaLR	14718	NR_037951	100534612	Hs.171929	NR_037951	ENSG00000273294	C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA
23.851-3	chr20	22480247	22480746	+	0	NA	Intergenic	Intergenic	78784	NR_001558	140828	Hs.9842	NR_001558	ENSG00000259974	LINC00261	ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17	long intergenic non-protein coding RNA 261	ncRNA
16.3451-7	chr11	95523961	95524460	+	0	NA	intron (NM_014679, intron 1 of 10)	intron (NM_014679, intron 1 of 10)	585	NM_001243776	9702	Hs.101014	NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
77.1444	chr1	90267557	90268056	+	0	NA	Intergenic	Intergenic	-18767	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
26.5365-3	chr8	59942972	59943471	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	88546	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
51.6304-2	chr9	14722504	14723003	+	0	NA	promoter-TSS (NM_005454)	promoter-TSS (NM_005454)	-38	NM_005454	9350	Hs.248204	NM_005454	ENSG00000147869	CER1	DAND4	cerberus 1, DAN family BMP antagonist	protein-coding
13.8828-6	chr21	36599422	36599921	+	0	NA	Intergenic	Intergenic	-178076	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
15.1713-2	chr2	70316651	70317150	+	0	NA	TTS (NM_006196)	TTS (NM_006196)	2315	NM_006196	5093	Hs.2853	NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
15.1004-4	chr11	20509812	20510311	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	100985	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
14.3415	chr18	76166967	76167466	+	0	NA	Intergenic	Intergenic	-461533	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
15.7675-2	chr16	56321840	56322339	+	0	NA	intron (NM_020988, intron 3 of 8)	L2b|LINE|L2	42657	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
22.4642-2	chr11	94509129	94509987	+	0	NA	intron (NM_001301007, intron 1 of 11)	L2|LINE|L2	8050	NM_001301007	154810	Hs.503594	NM_130847	ENSG00000166025	AMOTL1	JEAP	angiomotin like 1	protein-coding
19.914	chr6	144736104	144736603	+	0	NA	intron (NM_007124, intron 2 of 73)	Tigger3b|DNA|TcMar-Tigger	9562	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
24.168	chr9	92302028	92302527	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	47579	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
13.1605	chr4	185297178	185297677	+	0	NA	intron (NR_125934, intron 2 of 5)	L1MC4|LINE|L1	6033	NR_125934	102723766	Hs.432281	NR_125933	ENSG00000249096	LOC102723766	-	uncharacterized LOC102723766	ncRNA
20.5208	chr13	108772617	108773116	+	0	NA	Intergenic	LTR9B|LTR|ERV1	94264	NM_002312	3981	Hs.166091	NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
23.851-2	chr7	141130657	141131156	+	0	NA	intron (NM_001195278, intron 2 of 3)	intron (NM_001195278, intron 2 of 3)	-120172	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
15.0446	chr15	53951212	53951711	+	0	NA	intron (NR_102334, intron 14 of 19)	intron (NR_102334, intron 14 of 19)	100398	NM_182758	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
18.4164	chr6	36099270	36099769	+	0	NA	intron (NR_072996, intron 2 of 9)	intron (NR_072996, intron 2 of 9)	1258	NM_002754	5603	Hs.178695	NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
18.8941	chr13	90551488	90551987	+	0	NA	Intergenic	Intergenic	220234	NR_047489	100874187	Hs.564526	NR_047489	ENSG00000261446	LINC00559	-	long intergenic non-protein coding RNA 559	ncRNA
27.5203-2	chr15	41533364	41533863	+	0	NA	intron (NM_007236, intron 1 of 6)	MIR|SINE|MIR	10176	NM_007236	11261	Hs.406234	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin like EF-hand protein 1	protein-coding
18.4466-2	chr8	37698791	37699290	+	0	NA	exon (NM_032777, exon 19 of 19)	exon (NM_032777, exon 19 of 19)	8391	NM_018310	55290	Hs.709301	NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor subunit	protein-coding
26.1439	chr7	11564064	11564563	+	0	NA	intron (NM_015204, intron 6 of 26)	intron (NM_015204, intron 6 of 26)	307511	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin type 1 domain containing 7A	protein-coding
17.4715	chr13	89561202	89561701	+	0	NA	Intergenic	Intergenic	282344	NR_047490	100861553	Hs.560132	NR_047490		LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
16.9465-2	chr11	74092067	74092566	+	0	NA	intron (NM_173582, intron 1 of 13)	MLT1J2|LTR|ERVL-MaLR	17194	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A|PMMLP	phosphoglucomutase 2 like 1	protein-coding
17.5203	chr10	5569673	5570172	+	0	NA	Intergenic	Intergenic	-1713	NR_120496	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
14.8945-2	chr5	143963560	143964059	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	413372	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
26.3827	chr13	112507018	112507517	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-40425	NR_046992	101928616	Hs.528450	NR_046992		LINC00354	-	long intergenic non-protein coding RNA 354	ncRNA
14.9349	chr9	92292664	92293163	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	38215	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
24.8413	chr18	68948815	68949314	+	0	NA	Intergenic	LTR9|LTR|ERV1	297128	NR_038326	100505776	Hs.202072	NR_038325	ENSG00000260676	LINC01541	UTAT39	long intergenic non-protein coding RNA 1541	ncRNA
17.7469	chr4	119487094	119487593	+	0	NA	Intergenic	Intergenic	-25556	NR_109983	729218	Hs.448518	NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
16.6959	chr7	33556735	33557234	+	0	NA	intron (NM_001033604, intron 19 of 21)	LTR16C|LTR|ERVL	-387539	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
14.4733-2	chr1	61508999	61509498	+	0	NA	Intergenic	CpG	-33698	NM_001145511	4774	Hs.740757	NM_005595	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
27.8516	chr9	111239790	111240289	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	378236	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
32.8233	chr12	92759469	92759968	+	0	NA	Intergenic	Intergenic	-55589	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
21.2784	chr7	33745142	33745641	+	0	NA	Intergenic	Intergenic	-199132	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
20.9854	chr1	247479493	247480244	+	0	NA	intron (NM_001329733, intron 6 of 9)	MSTC|LTR|ERVL-MaLR	15374	NM_001329733	84838	Hs.168677	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
26.5365-4	chr13	78358540	78359039	+	0	NA	Intergenic	Intergenic	-34283	NR_103853	100505518	Hs.742215	NR_103853		EDNRB-AS1	-	EDNRB antisense RNA 1	ncRNA
13.1247	chr17	17614082	17614581	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	29544	NM_030665	10743	Hs.655395	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
34.2022	chr8	125586570	125587069	+	0	NA	intron (NM_014751, intron 6 of 13)	intron (NM_014751, intron 6 of 13)	35476	NM_005005	4715	Hs.15977	NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
13.3068	chr5	60792199	60792698	+	0	NA	intron (NM_020928, intron 4 of 13)	intron (NM_020928, intron 4 of 13)	-141160	NR_126525	285668	Hs.683866	NM_173667	ENSG00000178722	C5orf64	-	chromosome 5 open reading frame 64	protein-coding
18.4771-4	chr13	107001944	107002443	+	0	NA	Intergenic	Intergenic	-26718	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
18.9963	chr22	39320432	39320931	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-32846	NM_001193289	100913187	Hs.226307	NM_001193289		APOBEC3A_B	-	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
18.6328-2	chrX	9896070	9896569	+	0	NA	intron (NM_001320663, intron 1 of 5)	intron (NM_001320663, intron 1 of 5)	15907	NM_001320664	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
22.4185	chr12	80377595	80378094	+	0	NA	Intergenic	L2a|LINE|L2	-48609	NM_001244990	4659	Hs.49582	NM_002480	ENSG00000058272	PPP1R12A	M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
16.6756	chr2	238642453	238642952	+	0	NA	intron (NM_001137550, intron 9 of 23)	intron (NM_001137550, intron 9 of 23)	41895	NM_001137553	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
21.8243	chr6	170063521	170064020	+	0	NA	intron (NM_182552, intron 8 of 25)	intron (NM_182552, intron 8 of 25)	38389	NM_001202550	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
13.3724-3	chr18	1247286	1247785	+	0	NA	Intergenic	MIRc|SINE|MIR	112095	NR_110327	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
16.9465-4	chr13	52248340	52248839	+	0	NA	intron (NM_052950, intron 2 of 11)	intron (NM_052950, intron 2 of 11)	90105	NM_052950	115825	Hs.46506	NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
19.7881-2	chr14	100511589	100512088	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-19913	NM_016337	51466	Hs.125867	NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
14.6344-4	chr18	56448719	56449218	+	0	NA	Intergenic	Intergenic	-80864	NM_001318726	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
14.2829-3	chr13	95408102	95408601	+	0	NA	Intergenic	L1PA16|LINE|L1	-4844	NR_110754	101927284	Hs.551673	NR_110754		LOC101927284	-	uncharacterized LOC101927284	ncRNA
22.8483	chr1	245408455	245408954	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	90417	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
13.4775-3	chr17	70657523	70658022	+	0	NA	intron (NM_001159770, intron 7 of 9)	intron (NM_001159770, intron 7 of 9)	-21161	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
23.5754	chr18	29737916	29738415	+	0	NA	Intergenic	Intergenic	-31822	NM_001308171	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
19.5468-6	chr5	572090	572589	+	0	NA	Intergenic	Intergenic	-36342	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
26.6756	chr9	13443631	13444130	+	0	NA	Intergenic	Intergenic	-12552	NR_033863	401492	Hs.632651	NR_033863	ENSG00000270547	LINC01235	-	long intergenic non-protein coding RNA 1235	ncRNA
19.1364	chr6	123439795	123440294	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	122928	NM_001010852	134829	Hs.486361	NM_001010852	ENSG00000146352	CLVS2	C6orf212|C6orf213|RLBP1L2|bA160A10.4	clavesin 2	protein-coding
20.716-3	chr1	213311673	213312172	+	0	NA	intron (NM_001136138, intron 5 of 13)	L1PA15|LINE|L1	87347	NM_001287221	26750	Hs.591416	NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
16.3451-6	chr8	144437063	144437562	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	4835	NM_001258446	116447	Hs.528574	NM_052963	ENSG00000184428	TOP1MT	-	topoisomerase (DNA) I, mitochondrial	protein-coding
23.4008	chr1	230294534	230295033	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	91841	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
13.4486-3	chr4	2963668	2964167	+	0	NA	intron (NM_003703, intron 1 of 18)	MIRb|SINE|MIR	1316	NM_003703	8602	Hs.627133	NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
15.9007	chr1	197430361	197430860	+	0	NA	intron (NR_047564, intron 11 of 11)	intron (NR_047564, intron 11 of 11)	193276	NM_201253	23418	Hs.126135	NM_012076	ENSG00000134376	CRB1	LCA8|RP12	crumbs 1, cell polarity complex component	protein-coding
18.0134-4	chr22	36727407	36727906	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-44703	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
26.8825-2	chr4	41454785	41455284	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	-85140	NM_001330672	22998	Hs.335163	NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
17.7728-4	chr9	34399224	34399723	+	0	NA	3' UTR (NM_147202, exon 6 of 6)	3' UTR (NM_147202, exon 6 of 6)	-1624	NM_032596	84688	Hs.50334	NM_032596	ENSG00000164972	C9orf24	CBE1|NYD-SP22|SMRP1|bA573M23.4	chromosome 9 open reading frame 24	protein-coding
28.962	chr1	218447407	218447906	+	0	NA	Intergenic	Intergenic	-10973	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
26.2342-2	chr2	5935834	5936333	+	0	NA	Intergenic	L1PA10|LINE|L1	103284	NM_003108	6664	Hs.432638	NM_003108	ENSG00000176887	SOX11	MRD27	SRY-box 11	protein-coding
14.9894-8	chr8	135703446	135703945	+	0	NA	intron (NM_001289394, intron 1 of 16)	intron (NM_001289394, intron 1 of 16)	5106	NM_001167583	57623	Hs.446172	NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
22.4033	chr8	115395898	115396397	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-946905	NM_198123	114788	Hs.91381	NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
14.1341-3	chr1	40220734	40221233	+	0	NA	non-coding (NR_036543, exon 10 of 10)	non-coding (NR_036543, exon 10 of 10)	16037	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
24.7366	chr1	209010645	209011144	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-487907	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
19.0309-4	chr2	220636803	220637302	+	0	NA	Intergenic	Intergenic	134234	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
20.9691	chr4	38000862	38001361	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	39055	NM_006607	10744	Hs.668806	NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
15.4821-5	chr5	73502541	73503040	+	0	NA	Intergenic	Intergenic	101360	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
16.1798	chr19	15749509	15750008	+	0	NA	Intergenic	Intergenic	-1949	NM_001199208	4051	Hs.106242	NM_000896	ENSG00000186529	CYP4F3	CPF3|CYP4F|LTB4H	cytochrome P450 family 4 subfamily F member 3	protein-coding
18.2681-2	chr11	15939684	15940183	+	0	NA	Intergenic	Intergenic	51234	NR_106721	102464826		NR_106721	ENSG00000110693	MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
19.2082	chr3	37558576	37559075	+	0	NA	intron (NM_002207, intron 9 of 27)	intron (NM_002207, intron 9 of 27)	65012	NM_002207	3680	Hs.113157	NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
16.925-5	chr7	7178469	7178968	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-42301	NR_034022	100131257	Hs.551110	NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
15.5909-2	chr22	24181159	24181658	+	0	NA	promoter-TSS (NM_001135751)	promoter-TSS (NM_001135751)	-209	NM_198440	91319	Hs.593679	NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
16.3451-5	chr16	506780	507279	+	0	NA	intron (NM_014700, intron 1 of 13)	intron (NM_014700, intron 1 of 13)	-17821	NM_001142272	9727	Hs.531642	NM_014700	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
25.9517	chr6	104974365	104974864	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	332807	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
15.1999	chr3	159493133	159493632	+	0	NA	intron (NM_001197113, intron 5 of 10)	intron (NM_001197113, intron 5 of 10)	-6981	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
15.8838-3	chr6	71099731	71100230	+	0	NA	Intergenic	Intergenic	-3925	NR_125857	101928353		NR_125857		EVADR	-	uncharacterized LOC101928353	ncRNA
14.0561-4	chr4	184420435	184420934	+	0	NA	intron (NR_033995, intron 1 of 2)	intron (NR_033995, intron 1 of 2)	4984	NR_033995	389247	Hs.385787	NR_033995		LOC389247	-	uncharacterized LOC389247	ncRNA
16.3451-4	chr1	93352379	93352878	+	0	NA	intron (NM_001006605, intron 1 of 4)	MLT1I|LTR|ERVL-MaLR	-9921	NM_001252271	388650	Hs.180946	NM_001006605	ENSG00000154511	FAM69A	-	family with sequence similarity 69 member A	protein-coding
24.4855	chr2	205912102	205912601	+	0	NA	exon (NM_001302769, exon 4 of 23)	exon (NM_001302769, exon 4 of 23)	501835	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
26.9465	chr20	44048091	44048590	+	0	NA	intron (NR_047695, intron 2 of 8)	intron (NR_047695, intron 2 of 8)	3633	NR_047691	51604	Hs.437388	NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding
15.5909	chr18	48086210	48086709	+	0	NA	promoter-TSS (NM_001292040)	promoter-TSS (NM_001292040)	-25	NM_001292040	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
18.1531-5	chr15	48313530	48314029	+	0	NA	Intergenic	Intergenic	-99390	NM_205850	283652	Hs.710240	NM_205850	ENSG00000188467	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 member 5	protein-coding
19.5861-2	chr14	47287285	47287784	+	0	NA	Intergenic	Intergenic	-166506	NM_080746	140801	Hs.308332	NM_080746	ENSG00000165496	RPL10L	RPL10_5_1358	ribosomal protein L10 like	protein-coding
15.4821-6	chr11	76614378	76614877	+	0	NA	intron (NM_001300953, intron 1 of 9)	MER4D|LTR|ERV1	42710	NM_001300954	55331	Hs.23862	NM_018367	ENSG00000078124	ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
14.7108-7	chr12	22852478	22852977	+	0	NA	Intergenic	Intergenic	74651	NM_018638	55500	Hs.29464	NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
21.1407	chr1	118174388	118174887	+	0	NA	Intergenic	MIRb|SINE|MIR	26033	NM_017709	54855	Hs.356216	NM_017709	ENSG00000183508	FAM46C	-	family with sequence similarity 46 member C	protein-coding
18.5699	chr4	29807381	29807880	+	0	NA	Intergenic	Intergenic	-914400	NM_032456	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
15.4212	chr2	153504014	153504513	+	0	NA	intron (NM_052905, intron 25 of 25)	intron (NM_052905, intron 25 of 25)	69712	NM_017892	55660	Hs.643580	NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
13.1876-2	chr9	13164872	13165371	+	0	NA	intron (NM_001330637, intron 22 of 46)	intron (NM_001330637, intron 22 of 46)	114442	NM_003829	8777	Hs.169378	NM_003829	ENSG00000107186	MPDZ	HYC2|MUPP1	multiple PDZ domain crumbs cell polarity complex component	protein-coding
13.3724-4	chr2	66532833	66533332	+	0	NA	Intergenic	Intergenic	52378	NR_039938	100616464		NR_039938	ENSG00000264525	MIR4778	-	microRNA 4778	ncRNA
15.817-4	chr4	3310129	3310628	+	0	NA	Intergenic	Intergenic	-5496	NM_198229	6002	Hs.527061	NM_002926	ENSG00000159788	RGS12	-	regulator of G-protein signaling 12	protein-coding
13.3255-7	chr2	179971153	179971652	+	0	NA	3' UTR (NM_178123, exon 18 of 18)	3' UTR (NM_178123, exon 18 of 18)	-56616	NM_173648	285025	Hs.324341	NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
16.4207-2	chr1	246701054	246701553	+	0	NA	Intergenic	LTR9|LTR|ERV1	-13714	NR_040002	255654	Hs.407570	NR_040002	ENSG00000242042	LINC01743	-	long intergenic non-protein coding RNA 1743	ncRNA
16.1439	chr15	95869875	95870374	+	0	NA	non-coding (NR_034095, exon 1 of 4)	non-coding (NR_034095, exon 1 of 4)	205	NR_034095	400456	Hs.536404	NR_034095	ENSG00000248441	LINC01197	-	long intergenic non-protein coding RNA 1197	ncRNA
22.652	chr3	94696963	94697462	+	0	NA	intron (NR_015400, intron 3 of 7)	MSTB2|LTR|ERVL-MaLR	40105	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
21.6115	chr2	191728622	191729121	+	0	NA	Intergenic	Intergenic	-16676	NM_001256310	2744	Hs.116448	NM_014905	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
31.7134-2	chr8	98581673	98582172	+	0	NA	Intergenic	Intergenic	-74485	NM_178812	92140	Hs.377155	NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
17.7989-3	chr6	55501261	55501760	+	0	NA	Intergenic	Intergenic	-57498	NR_109867	54511	Hs.147054	NM_019036	ENSG00000146151	HMGCLL1	bA418P12.1|er-cHL	3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1	protein-coding
14.51-2	chr14	52569981	52570480	+	0	NA	Intergenic	Intergenic	-34284	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
14.4733	chr9	81879233	81879732	+	0	NA	Intergenic	Intergenic	-118901	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
21.1182	chr9	79520904	79521403	+	0	NA	promoter-TSS (NR_131751)	promoter-TSS (NR_131751)	-150	NR_131751	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding
23.0277	chr8	95961979	95962478	+	0	NA	promoter-TSS (NM_033285)	promoter-TSS (NM_033285)	-613	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
15.5129	chr18	46478371	46478870	+	0	NA	Intergenic	CpG-11785	-1539	NM_005904	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
14.4129	chr4	5942124	5942623	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-17318	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	mir-378d-1	microRNA 378d-1	ncRNA
15.9007-2	chr8	126591614	126592113	+	0	NA	Intergenic	Intergenic	147412	NM_001282985	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
16.925-3	chr14	81002849	81003348	+	0	NA	intron (NM_152446, intron 20 of 23)	intron (NM_152446, intron 20 of 23)	-305701	NM_000793	1734	Hs.202354	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding
46.2709	chr3	97298165	97298664	+	0	NA	intron (NM_173655, intron 9 of 12)	intron (NM_173655, intron 9 of 12)	139977	NM_173655	285220	Hs.272208	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
19.8716-2	chr11	31732609	31733108	+	0	NA	intron (NM_001288726, intron 10 of 11)	intron (NM_001288726, intron 10 of 11)	92927	NM_001310161	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
15.0724-3	chr1	36396189	36396688	+	0	NA	promoter-TSS (NM_177422)	promoter-TSS (NM_177422)	-245	NM_024852	192669	Hs.657659	NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute 3, RISC catalytic component	protein-coding
22.8483-2	chr11	129328586	129329085	+	0	NA	Intergenic	Intergenic	82954	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
14.0782	chr22	28820625	28821124	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-34983	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
13.1876	chr5	20749364	20749863	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-173631	NM_001291956	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
44.51	chr9	72260381	72260880	+	0	NA	intron (NM_001163, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	26645	NM_001163	320	Hs.171939	NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
23.7366	chr4	77654440	77654939	+	0	NA	intron (NM_020859, intron 4 of 10)	intron (NM_020859, intron 4 of 10)	157985	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
13.6151-3	chr6	109670663	109671404	+	0	NA	Intergenic	Intergenic	31909	NM_001346500	8763	Hs.520313	NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
20.7572	chr7	18929058	18929557	+	0	NA	intron (NM_178425, intron 21 of 24)	intron (NM_178425, intron 21 of 24)	227988	NM_000474	7291	Hs.66744	NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
13.9147	chrUn_gl000214	116893	117392	+	0	NA	NA	Intergenic	NA	NA								
18.7943	chr6	137322360	137322859	+	0	NA	3' UTR (NM_001278722, exon 7 of 7)	3' UTR (NM_001278722, exon 7 of 7)	-8241	NR_027994	100294720	Hs.520412	NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed 1	ncRNA
24.5346-2	chr4	169991070	169991569	+	0	NA	Intergenic	Intergenic	-59851	NM_032783	84869	Hs.659311	NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
14.2136-3	chr13	108321617	108322116	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-138270	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
16.3451-10	chr10	99478406	99478905	+	0	NA	TTS (NM_031484)	TTS (NM_031484)	5190	NM_031484	83742	Hs.744073	NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
15.817-3	chr7	25399148	25399647	+	0	NA	Intergenic	Intergenic	-131292	NM_022150	64111	Hs.60473	NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
29.9568	chr4	114328582	114329081	+	0	NA	Intergenic	Intergenic	255393	NR_107049	102465878		NR_107049	ENSG00000275810	MIR8082	hsa-mir-8082	microRNA 8082	ncRNA
15.1145-3	chr15	86042667	86043166	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	119069	NM_007200	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
16.3078	chr18	46065051	46065550	+	0	NA	promoter-TSS (NM_001142397)	promoter-TSS (NM_001142397)	-127	NM_001142397	9811	Hs.145230	NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
16.6354-5	chr11	134255924	134256423	+	0	NA	intron (NM_018644, intron 3 of 6)	intron (NM_018644, intron 3 of 6)	25639	NM_018644	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
25.8503	chr7	135458916	135459415	+	0	NA	Intergenic	Intergenic	-25571	NM_205855	389558	Hs.55200	NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
18.2974-2	chr3	135412805	135413304	+	0	NA	Intergenic	Intergenic	-271461	NM_002718	5523	Hs.518155	NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
21.209	chr11	15584487	15584986	+	0	NA	Intergenic	Intergenic	-80695	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
23.8828	chr6	51017513	51018012	+	0	NA	Intergenic	Intergenic	231323	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
24.2481	chr11	34676311	34676810	+	0	NA	intron (NM_012153, intron 6 of 8)	intron (NM_012153, intron 6 of 8)	22549	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
15.2288	chr6	18208102	18208601	+	0	NA	intron (NM_153042, intron 12 of 17)	intron (NM_153042, intron 12 of 17)	52732	NM_153042	221656	Hs.709336	NM_153042	ENSG00000165097	KDM1B	AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2	lysine demethylase 1B	protein-coding
17.2816	chr18	13440839	13441338	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	-13555	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
18.4466	chr18	72125069	72125568	+	0	NA	promoter-TSS (NM_001044369)	promoter-TSS (NM_001044369)	-815	NM_001044369	125704	Hs.371690	NM_001044369	ENSG00000187773	FAM69C	C18orf51	family with sequence similarity 69 member C	protein-coding
34.168	chr1	157329307	157329806	+	0	NA	Intergenic	MIRc|SINE|MIR	192754	NM_001195388	83416	Hs.415950	NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
15.9517	chr16	52504441	52504940	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	76116	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
15.7675-3	chr8	87526407	87526906	+	0	NA	promoter-TSS (NM_003909)	promoter-TSS (NM_003909)	0	NM_003909	8895	Hs.191219	NM_003909	ENSG00000085719	CPNE3	CPN3|PRO1071	copine 3	protein-coding
34.4855	chr18	57055387	57055886	+	0	NA	Intergenic	Intergenic	-29128	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
26.2342	chr6	83322159	83322658	+	0	NA	Intergenic	Intergenic	248447	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
23.8722	chr16	1820292	1820791	+	0	NA	TTS (NM_015133)	TTS (NM_015133)	1169	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
13.8934	chr5	143844733	143845232	+	0	NA	intron (NM_020768, intron 3 of 3)	intron (NM_020768, intron 3 of 3)	294545	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
13.363-2	chr10	18172539	18173038	+	0	NA	intron (NM_002438, intron 21 of 29)	intron (NM_002438, intron 21 of 29)	38752	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
14.9894-2	chr1	17287167	17287666	+	0	NA	exon (NM_014675, exon 27 of 37)	exon (NM_014675, exon 27 of 37)	19757	NM_001135248	4237	Hs.389137	NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar associated protein 2	protein-coding
13.6552-3	chr3	16112706	16113205	+	0	NA	Intergenic	Intergenic	-102874	NM_001319051	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
14.1908-5	chr13	39701029	39701528	+	0	NA	Intergenic	Intergenic	88830	NM_001017370	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
13.1876-3	chr2	236415282	236415781	+	0	NA	intron (NR_131900, intron 1 of 1)	intron (NR_131900, intron 1 of 1)	1136	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
14.2366	chr22	44568577	44569076	+	0	NA	promoter-TSS (NM_001137605)	promoter-TSS (NM_001137605)	-10	NM_001137605	64098	Hs.658995	NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
16.6555-2	chr13	73939435	73939934	+	0	NA	Intergenic	Intergenic	-198697	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
14.7108	chr4	17782812	17783311	+	0	NA	promoter-TSS (NM_015688)	promoter-TSS (NM_015688)	74	NM_015688	27146	Hs.744951	NM_015688	ENSG00000047662	FAM184B	-	family with sequence similarity 184 member B	protein-coding
14.6218	chr9	81825809	81826308	+	0	NA	Intergenic	Intergenic	-65477	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
14.698-2	chr16	73105146	73105645	+	0	NA	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-12861	NM_001164766	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
15.7512	chr18	10213464	10213963	+	0	NA	Intergenic	Intergenic	200654	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
33.4008	chr13	111277164	111277663	+	0	NA	intron (NR_040104, intron 3 of 8)	CpG	9482	NM_018210	55739	Hs.408324	NM_018210	ENSG00000213995	NAXD	CARKD|LP3298	NAD(P)HX dehydratase	protein-coding
13.3255-4	chr5	14262766	14263558	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	119351	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
25.9517-2	chr2	165791766	165792265	+	0	NA	intron (NM_001199148, intron 6 of 10)	AluJr|SINE|Alu	20020	NM_173512	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
13.4104	chr1	231654311	231654810	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-9839	NR_028394	100303453	Hs.13318	NR_028393	ENSG00000270106	TSNAX-DISC1	-	TSNAX-DISC1 readthrough (NMD candidate)	ncRNA
26.7778	chr13	66130529	66131028	+	0	NA	Intergenic	L1PA16|LINE|L1	-309401	NR_132362	105370242	Hs.578051	NR_132362		LINC01052	-	long intergenic non-protein coding RNA 1052	ncRNA
45.0585	chr12	115122333	115122832	+	0	NA	promoter-TSS (NM_005996)	promoter-TSS (NM_005996)	-613	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
35.8503	chr1	85763636	85764135	+	0	NA	Intergenic	Intergenic	-21298	NM_001320715	8915	Hs.193516	NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	B-cell CLL/lymphoma 10	protein-coding
17.0553-4	chr3	193664603	193665102	+	0	NA	Intergenic	Intergenic	47175	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
16.6354-4	chr8	109473237	109473736	+	0	NA	intron (NM_014673, intron 5 of 10)	intron (NM_014673, intron 5 of 10)	17674	NM_001329495	9694	Hs.654351	NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
15.8004	chr11	76902950	76903449	+	0	NA	exon (NM_000260, exon 31 of 49)	exon (NM_000260, exon 31 of 49)	63883	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
15.6703	chr13	99630471	99630970	+	0	NA	promoter-TSS (NM_001130048)	promoter-TSS (NM_001130048)	-382	NM_001130050	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
40.6449	chr1	242281796	242282295	+	0	NA	intron (NM_001320272, intron 7 of 10)	intron (NM_001320272, intron 7 of 10)	-119660	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
23.1247-2	chr11	22802507	22803006	+	0	NA	intron (NM_001143830, intron 7 of 7)	intron (NM_001143830, intron 7 of 7)	48169	NR_135213	258010	Hs.349096	NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
14.51	chr12	41537815	41538314	+	0	NA	Intergenic	L2a|LINE|L2	-44186	NM_001164595	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
30.2641	chr15	94954479	94954978	+	0	NA	intron (NM_001159643, intron 16 of 19)	intron (NM_001159643, intron 16 of 19)	55564	NM_001159644	55784	Hs.33368	NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
15.8838-4	chr18	8661831	8662330	+	0	NA	Intergenic	Intergenic	45539	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1|MTCL1AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
23.5262-2	chr9	95485354	95485853	+	0	NA	intron (NM_015250, intron 2 of 7)	L1MB8|LINE|L1	41480	NM_001003800	23299	Hs.436939	NM_015250	ENSG00000185963	BICD2	SMALED2|bA526D8.1	BICD cargo adaptor 2	protein-coding
22.4185-3	chr1	40532907	40533406	+	0	NA	intron (NM_001330502, intron 7 of 12)	intron (NM_001330502, intron 7 of 12)	26901	NM_001105530	10487	Hs.370581	NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	adenylate cyclase associated protein 1	protein-coding
40.3574	chr18	67302118	67303062	+	0	NA	intron (NM_152721, intron 3 of 7)	LTR16E2|LTR|ERVL	165423	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
13.9686	chr11	118900969	118901899	+	0	NA	5' UTR (NM_001164277, exon 2 of 11)	5' UTR (NM_001164277, exon 2 of 11)	182	NM_001164279	2542	Hs.719203	NM_001467	ENSG00000137700	SLC37A4	G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
15.3462-4	chr1	87667496	87667995	+	0	NA	Intergenic	Intergenic	-10607	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
19.3554-2	chr1	107057795	107058294	+	0	NA	Intergenic	Intergenic	-541223	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
46.5561-2	chr6	53152468	53152967	+	0	NA	exon (NM_001242828, exon 4 of 9)	exon (NM_001242828, exon 4 of 9)	10926	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
16.5365-2	chr6	137280571	137281070	+	0	NA	Intergenic	LTR1D|LTR|ERV1	33548	NR_027994	100294720	Hs.520412	NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed 1	ncRNA
19.0309-5	chr13	73747503	73748002	+	0	NA	Intergenic	Intergenic	114822	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
17.0333	chr11	92954616	92955115	+	0	NA	Intergenic	Intergenic	-23724	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
19.1721	chr17	65015057	65015556	+	0	NA	intron (NM_014405, intron 2 of 3)	intron (NM_014405, intron 2 of 3)	-25346	NM_000727	786	Hs.147989	NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
18.7615-3	chr18	32956726	32957225	+	0	NA	intron (NM_001322290, intron 1 of 4)	CpG	326	NM_001322290	252884	Hs.351005	NM_145756	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
38.6967	chr1	40366151	40366650	+	0	NA	3' UTR (NM_005376, exon 2 of 2)	3' UTR (NM_005376, exon 2 of 2)	1287	NM_005376	4610	Hs.437922	NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog	protein-coding
14.0121	chr9	8694999	8695498	+	0	NA	intron (NM_001040712, intron 1 of 29)	MLT1L|LTR|ERVL-MaLR	38698	NM_130393	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
18.2102-2	chr5	76376505	76377004	+	0	NA	promoter-TSS (NR_003014)	promoter-TSS (NR_003014)	-358	NR_003014	677828	Hs.693249	NR_003014	ENSG00000238961	SNORA47	HBI-115	small nucleolar RNA, H/ACA box 47	snoRNA
19.2082-3	chr14	77477519	77478018	+	0	NA	Intergenic	MIR|SINE|MIR	17274	NM_024496	64207	Hs.179260	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein like	protein-coding
23.5262-3	chr7	4971487	4971986	+	0	NA	intron (NM_198403, intron 1 of 6)	intron (NM_198403, intron 1 of 6)	27108	NM_198403	221938	Hs.558694	NM_198403	ENSG00000136297	MMD2	PAQR10	monocyte to macrophage differentiation associated 2	protein-coding
22.6761	chr5	106589401	106589900	+	0	NA	Intergenic	Intergenic	-242935	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
19.7062-2	chr2	157195115	157195614	+	0	NA	Intergenic	Intergenic	-6077	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
29.0309	chr20	12447101	12447600	+	0	NA	Intergenic	L1PB4|LINE|L1	470261	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
13.8616-3	chr6	114429458	114429957	+	0	NA	intron (NR_125845, intron 5 of 9)	LTR41|LTR|ERVL	-45666	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate-glucosamine 3-sulfotransferase 5	protein-coding
14.8017-2	chr21	40142604	40143103	+	0	NA	intron (NR_027065, intron 1 of 6)	intron (NR_027065, intron 1 of 6)	-1955	NR_027066	400866	Hs.278704	NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
20.9854-2	chr12	33591747	33592246	+	0	NA	intron (NM_198992, intron 1 of 6)	CpG	758	NM_198992	341359	Hs.118703	NM_198992	ENSG00000110975	SYT10	-	synaptotagmin 10	protein-coding
34.4491	chr12	5048444	5048943	+	0	NA	Intergenic	Intergenic	29620	NM_000217	3736	Hs.416139	NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
30.7263	chr18	26676663	26677162	+	0	NA	Intergenic	Intergenic	-919502	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
19.5468-7	chr6	5180806	5181305	+	0	NA	intron (NM_001164841, intron 2 of 3)	intron (NM_001164841, intron 2 of 3)	-32499	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
23.0452	chr4	158217790	158218289	+	0	NA	intron (NM_001083620, intron 2 of 15)	L2c|LINE|L2	76219	NM_001083620	2891	Hs.32763	NM_000826	ENSG00000120251	GRIA2	GLUR2|GLURB|GluA2|GluR-K2|HBGR2	glutamate ionotropic receptor AMPA type subunit 2	protein-coding
15.391-3	chr18	32606292	32606791	+	0	NA	intron (NM_001143827, intron 2 of 7)	intron (NM_001143827, intron 2 of 7)	-14783	NM_014268	10982	Hs.532824	NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
16.0033-2	chr1	234445571	234446070	+	0	NA	intron (NM_001300845, intron 3 of 6)	intron (NM_001300845, intron 3 of 6)	3607	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
14.2481-2	chr16	77977544	77978043	+	0	NA	intron (NM_020927, intron 7 of 8)	intron (NM_020927, intron 7 of 8)	-78650	NM_005752	10143	Hs.177936	NM_005752	ENSG00000166509	CLEC3A	CLECSF1	C-type lectin domain family 3 member A	protein-coding
23.1336-2	chr1	7427194	7427693	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-403886	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
16.6154	chr11	8632193	8632692	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-16606	NM_001289059	65975	Hs.501833	NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
37.5449	chr5	14501858	14502357	+	0	NA	intron (NM_007118, intron 53 of 56)	intron (NM_007118, intron 53 of 56)	-79784	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding
16.1439-2	chr5	38540296	38540795	+	0	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	16203	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
23.1158-3	chr8	74226516	74227357	+	0	NA	intron (NR_125388, intron 5 of 5)	intron (NR_125388, intron 5 of 5)	20099	NM_172037	157506	Hs.244940	NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding
15.0169	chr6	53775633	53776132	+	0	NA	intron (NM_018214, intron 10 of 13)	intron (NM_018214, intron 10 of 13)	-18898	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
13.4199-3	chr2	211293417	211293916	+	0	NA	intron (NR_110606, intron 1 of 4)	intron (NR_110606, intron 1 of 4)	47763	NM_001136574	10314	Hs.13351	NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like 1	protein-coding
23.2514	chr6	42738709	42739208	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-12276	NR_134654	401261	Hs.656652	NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
13.5164-2	chr8	80705798	80706297	+	0	NA	intron (NR_125410, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	25670	NR_125410	101927067	Hs.144030	NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
14.9485-2	chr5	38803258	38803757	+	0	NA	intron (NR_109951, intron 1 of 3)	MER47B|DNA|TcMar-Tigger	42424	NR_109951	101929768	Hs.546623	NR_109951		OSMR-AS1	CTD-2127H9.1	OSMR antisense RNA 1 (head to head)	ncRNA
19.0309	chr9	16705164	16705663	+	0	NA	intron (NM_001317940, intron 2 of 5)	intron (NM_001317940, intron 2 of 5)	165373	NM_001317940	54796	Hs.656581	NM_017637	ENSG00000173068	BNC2	BSN2	basonuclin 2	protein-coding
19.7881-3	chr12	130034842	130035341	+	0	NA	intron (NM_133448, intron 2 of 8)	intron (NM_133448, intron 2 of 8)	341945	NR_110058	101927735	Hs.569212	NR_110058	ENSG00000256699	LOC101927735	-	uncharacterized LOC101927735	ncRNA
14.1908-3	chr1	205335208	205335707	+	0	NA	Intergenic	Intergenic	-6923	NR_038425	284576	Hs.585440	NR_038425	ENSG00000226235	LEMD1-AS1	-	LEMD1 antisense RNA 1	ncRNA
30.752	chr3	167695619	167696118	+	0	NA	Intergenic	LTR67B|LTR|ERVL	82132	NR_033843	646168	Hs.390443	NR_033843	ENSG00000244227	LINC01330	-	long intergenic non-protein coding RNA 1330	pseudo
18.9963-2	chr9	140639894	140640393	+	0	NA	intron (NM_024757, intron 6 of 26)	intron (NM_024757, intron 6 of 26)	-17331	NR_024341	643210	Hs.721002	NM_001039765		EHMT1-IT1	-	EHMT1 intronic transcript 1	ncRNA
13.6251-2	chr1	43428580	43429079	+	0	NA	intron (NR_033967, intron 1 of 3)	intron (NR_033967, intron 1 of 3)	-3982	NM_006516	6513	Hs.473721	NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
14.5469	chr4	183784013	183784512	+	0	NA	Intergenic	Intergenic	54368	NM_001921	1635	Hs.183850	NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
14.7108-3	chr3	17734852	17735351	+	0	NA	intron (NM_001134381, intron 1 of 23)	L1PA3|LINE|L1	6411	NM_001134381	9779	Hs.475629	NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
18.4771	chr12	125152086	125152585	+	0	NA	Intergenic	Intergenic	-100325	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
25.5129-2	chr8	141801219	141801718	+	0	NA	intron (NM_001316342, intron 11 of 32)	intron (NM_001316342, intron 11 of 32)	-155822	NM_001164623	27161	Hs.743313	NM_012154	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute 2, RISC catalytic component	protein-coding
20.8619-3	chr8	125214502	125215001	+	0	NA	intron (NR_125420, intron 2 of 2)	intron (NR_125420, intron 2 of 2)	-30988	NR_103547	157376	Hs.662360	NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
16.216-3	chr8	34503642	34504141	+	0	NA	Intergenic	Intergenic	-137548	NR_125746	103689844	Hs.590682	NR_125746	ENSG00000254344	LINC01288	TCONS_00014671	long intergenic non-protein coding RNA 1288	ncRNA
18.2391-2	chr12	88539377	88539876	+	0	NA	intron (NM_181783, intron 1 of 13)	MER4C|LTR|ERV1	3553	NM_181783	160418	Hs.331268	NM_181783	ENSG00000139324	TMTC3	LIS8|SMILE	transmembrane and tetratricopeptide repeat containing 3	protein-coding
27.5203	chr18	55869779	55870278	+	0	NA	intron (NM_001144970, intron 1 of 28)	intron (NM_001144970, intron 1 of 28)	7406	NM_001144970	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
16.4782	chr6	77342992	77343491	+	0	NA	Intergenic	LTR1|LTR|ERV1	-560846	NM_001282368	3617	Hs.590893	NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding
40.9854	chr12	24704343	24704842	+	0	NA	intron (NM_001261414, intron 1 of 16)	intron (NM_001261414, intron 1 of 16)	10932	NM_001261414	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding
16.3827-2	chr18	69827888	69828387	+	0	NA	Intergenic	L1MEc|LINE|L1	-378675	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
20.8884-2	chr12	10513587	10514086	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-2532	NR_120430	101928100	Hs.638425	NR_120430	ENSG00000245648	LOC101928100	-	uncharacterized LOC101928100	ncRNA
14.7237	chr5	155339013	155339512	+	0	NA	Intergenic	Intergenic	-414505	NM_172244	6444	Hs.387207	NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
17.7989-2	chr2	50353936	50354435	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-152844	NM_001320157	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
24.3771-3	chr18	72922301	72922800	+	0	NA	promoter-TSS (NM_005786)	promoter-TSS (NM_005786)	-160	NM_005786	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
16.968	chr8	131342102	131342601	+	0	NA	intron (NM_001247996, intron 4 of 30)	intron (NM_001247996, intron 4 of 30)	-33572	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
16.7778	chr19	20292960	20293459	+	0	NA	intron (NM_052852, intron 1 of 3)	intron (NM_052852, intron 1 of 3)	15186	NM_052852	90649	Hs.590991	NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
24.5346-3	chr1	228996724	228997223	+	0	NA	Intergenic	Intergenic	126149	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
23.3068	chr3	183096676	183097175	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	49132	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
16.3451-3	chr5	31107045	31107544	+	0	NA	Intergenic	Intergenic	-86468	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
21.6813	chr8	75263256	75263755	+	0	NA	intron (NM_018972, intron 1 of 5)	intron (NM_018972, intron 1 of 5)	887	NM_018972	54332	Hs.168950	NM_018972	ENSG00000104381	GDAP1	CMT4|CMT4A|CMTRIA	ganglioside induced differentiation associated protein 1	protein-coding
18.041	chr18	20840139	20840638	+	0	NA	TTS (NM_001256438)	TTS (NM_001256438)	104599	NM_138375	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
30.2228	chr7	8383125	8383624	+	0	NA	TTS (NR_125740)	TTS (NR_125740)	-81132	NM_004968	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
17.1897	chr3	109884375	109884874	+	0	NA	Intergenic	MER4A1|LTR|ERV1	562949	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
13.3255	chr16	9056230	9056729	+	0	NA	intron (NM_003470, intron 1 of 30)	CpG	862	NM_003470	7874	Hs.386939	NM_003470	ENSG00000187555	USP7	HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
18.0134	chr1	222030180	222030679	+	0	NA	Intergenic	Intergenic	-16421	NR_125989	101929771	Hs.557001	NR_125989	ENSG00000227925	LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
29.1009-2	chr16	47921432	47921931	+	0	NA	promoter-TSS (NR_110649)	promoter-TSS (NR_110649)	-640	NR_110649	100507534	Hs.407601	NR_110649	ENSG00000261325	LOC100507534	-	uncharacterized LOC100507534	ncRNA
16.038-2	chr4	55523251	55524506	+	0	NA	promoter-TSS (NM_000222)	promoter-TSS (NM_000222)	-217	NM_001093772	3815	Hs.479754	NM_000222	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	KIT proto-oncogene receptor tyrosine kinase	protein-coding
14.0121-2	chr20	36573740	36574239	+	0	NA	TTS (NM_080607)	TTS (NM_080607)	42490	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
14.6092-2	chr7	126763847	126764346	+	0	NA	intron (NM_001127323, intron 2 of 10)	L2|LINE|L2	-65858	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
16.4975	chr4	2926258	2926757	+	0	NA	intron (NM_001286645, intron 15 of 17)	intron (NM_001286645, intron 15 of 17)	9457	NM_001120	10227	Hs.632581	NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
14.6344-2	chr10	134120325	134120824	+	0	NA	5' UTR (NM_001318879, exon 1 of 12)	5' UTR (NM_001318879, exon 1 of 12)	152	NM_001318879	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
37.9317	chr5	171991178	171991677	+	0	NA	Intergenic	Intergenic	-76842	NM_001308177	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
13.0452-5	chr7	111630573	111631072	+	0	NA	intron (NM_014705, intron 5 of 51)	intron (NM_014705, intron 5 of 51)	182261	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
13.3724-6	chr8	8915426	8915925	+	0	NA	Intergenic	L2a|LINE|L2	9720	NR_039804	100616350		NR_039804	ENSG00000263407	MIR4660	-	microRNA 4660	ncRNA
18.5699-2	chr11	72497373	72497872	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	3047	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
54.2597	chr4	124509121	124509620	+	0	NA	Intergenic	Intergenic	-64570	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
23.83	chr2	242356899	242357398	+	0	NA	intron (NM_014808, intron 7 of 26)	intron (NM_014808, intron 7 of 26)	-60172	NR_036083	100422942		NR_036083	ENSG00000263752	MIR3133	-	microRNA 3133	ncRNA
15.986	chr1	36174126	36174625	+	0	NA	Intergenic	Intergenic	10415	NM_152374	127703	Hs.112023	NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
23.1515	chr7	148198704	148199203	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-88704	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
14.1794-2	chr8	123932663	123933162	+	0	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	121751	NM_024295	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
22.1968	chr5	10331499	10331998	+	0	NA	Intergenic	Intergenic	-22003	NM_001270661	10299	Hs.432862	NM_005885	ENSG00000145495	MARCH6	DOA10|MARCH-VI|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
24.3771-2	chr1	212661848	212662347	+	0	NA	Intergenic	Intergenic	55868	NM_013349	29937	Hs.461787	NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
41.3727	chr6	15908252	15908751	+	0	NA	Intergenic	Intergenic	-220816	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
17.5203-3	chr16	78218356	78218855	+	0	NA	intron (NM_001291997, intron 4 of 7)	intron (NM_001291997, intron 4 of 7)	85295	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
13.3536	chrX	5920113	5920612	+	0	NA	intron (NM_001282145, intron 4 of 6)	intron (NM_001282145, intron 4 of 6)	-224037	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
16.3451-9	chr11	86884326	86884825	+	0	NA	intron (NR_033149, intron 4 of 13)	MIRb|SINE|MIR	135689	NM_001168724	65084	Hs.188591	NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
13.0452-3	chr5	167690061	167690560	+	0	NA	3' UTR (NM_001122679, exon 29 of 29)	3' UTR (NM_001122679, exon 29 of 29)	-28755	NM_015238	23286	Hs.484047	NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
17.7211-3	chr13	112718509	112719008	+	0	NA	intron (NR_120392, intron 1 of 3)	intron (NR_120392, intron 1 of 3)	-3155	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY-box 1	protein-coding
14.4009-2	chr4	113970893	113971392	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	357	NM_020977	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
19.7469-2	chr1	26215969	26216468	+	0	NA	intron (NM_001145454, intron 4 of 4)	L2a|LINE|L2	16426	NM_203401	3925	Hs.209983	NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
32.0343-2	chr12	6482459	6482958	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	1682	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
15.0724-4	chr18	70049216	70049715	+	0	NA	Intergenic	L1PA15|LINE|L1	162258	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
36.5365	chr3	145657270	145657769	+	0	NA	Intergenic	Intergenic	221763	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
18.1531	chr5	45090755	45091254	+	0	NA	Intergenic	Intergenic	281977	NM_016640	10884	Hs.124165	NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
22.0551	chr2	112200271	112200770	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	52218	NR_136166	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-2HG	AGD2|AK001796|LINC00978|MIR4435-1HG	MIR4435-2 host gene	ncRNA
14.8413	chr16	5022498	5022997	+	0	NA	intron (NM_014692, intron 2 of 15)	L1MB3|LINE|L1	14429	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
16.2893	chr11	116037177	116037676	+	0	NA	Intergenic	MIRb|SINE|MIR	-406508	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
13.2057	chr9	13841761	13842260	+	0	NA	Intergenic	Intergenic	-85960	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
15.4821	chr18	25141464	25141963	+	0	NA	Intergenic	Intergenic	-219093	NR_134589	105372038	Hs.722107	NR_134589	ENSG00000264151	LOC105372038	-	uncharacterized LOC105372038	ncRNA
14.3297	chr4	170775203	170775702	+	0	NA	Intergenic	Intergenic	-96359	NM_017867	54969	Hs.406756	NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
18.2681	chr13	95365038	95365537	+	0	NA	promoter-TSS (NM_007084)	promoter-TSS (NM_007084)	317	NR_046514	100507533	Hs.556071	NR_046514	ENSG00000227640	SOX21-AS1	-	SOX21 antisense RNA 1 (head to head)	ncRNA
14.6597	chr6	36288166	36288665	+	0	NA	intron (NM_001010903, intron 10 of 11)	intron (NM_001010903, intron 10 of 11)	16247	NM_001010903	389384	Hs.162104	NM_001010903	ENSG00000189325	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
43.1069-3	chr14	62075423	62075922	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-38301	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19.1721-2	chr8	102169704	102170203	+	0	NA	Intergenic	Intergenic	48007	NM_001267708	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
69.0309	chr13	107448644	107449448	+	0	NA	Intergenic	Intergenic	142818	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
16.7366-3	chr9	112107596	112108095	+	0	NA	Intergenic	Intergenic	-24601	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
15.4212-2	chr4	103658221	103658720	+	0	NA	intron (NM_005908, intron 1 of 16)	L1PB1|LINE|L1	23681	NM_005908	4126	Hs.480415	NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
15.544	chr5	173492680	173493179	+	0	NA	intron (NM_015980, intron 3 of 4)	intron (NM_015980, intron 3 of 4)	20322	NM_015980	51617	Hs.559412	NM_015980	ENSG00000170091	HMP19	-	HMP19 protein	protein-coding
13.6856-2	chr4	156588712	156589211	+	0	NA	5' UTR (NM_001130684, exon 1 of 9)	5' UTR (NM_001130684, exon 1 of 9)	146	NM_001130684	2982	Hs.24258	NM_000856	ENSG00000164116	GUCY1A3	GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A1|MYMY6	guanylate cyclase 1 soluble subunit alpha	protein-coding
20.8619-4	chr7	34767051	34767550	+	0	NA	intron (NR_015356, intron 3 of 4)	intron (NR_015356, intron 3 of 4)	30584	NR_033664	404744	Hs.487951	NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
13.5952-3	chr7	55208292	55208791	+	0	NA	intron (NM_001346900, intron 1 of 27)	intron (NM_001346900, intron 1 of 27)	31031	NM_001346900	1956	Hs.488293	NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
15.1428-2	chr18	25291857	25292356	+	0	NA	Intergenic	Intergenic	324443	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
32.3508	chr4	185252405	185252904	+	0	NA	Intergenic	LTR82B|LTR|ERVL	22476	NR_040108	728175	Hs.590107	NR_040108	ENSG00000180712	LOC728175	-	uncharacterized LOC728175	ncRNA
29.9568-3	chr6	9504064	9504563	+	0	NA	Intergenic	Intergenic	851871	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
17.0553-2	chr1	220960512	220961011	+	0	NA	intron (NM_022746, intron 1 of 6)	intron (NM_022746, intron 1 of 6)	722	NM_022746	64757	Hs.497816	NM_022746	ENSG00000186205	MARC1	MOSC1	mitochondrial amidoxime reducing component 1	protein-coding
14.9621	chr10	127600512	127601011	+	0	NA	intron (NM_145235, intron 1 of 10)	intron (NM_145235, intron 1 of 10)	15653	NM_145235	92565	Hs.352591	NM_145235	ENSG00000203780	FANK1	HSD13	fibronectin type III and ankyrin repeat domains 1	protein-coding
22.1968-2	chr12	53307134	53307633	+	0	NA	intron (NM_001256293, intron 1 of 8)	intron (NM_001256293, intron 1 of 8)	-8515	NM_002273	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
20.2	chr15	48354312	48354811	+	0	NA	Intergenic	Intergenic	-58608	NM_205850	283652	Hs.710240	NM_205850	ENSG00000188467	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 member 5	protein-coding
20.8831	chr3	140866432	140866931	+	0	NA	3' UTR (NM_080862, exon 3 of 3)	3' UTR (NM_080862, exon 3 of 3)	-83986	NM_001037172	92370	Hs.657887	NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
14.3652	chr2	209271320	209272161	+	0	NA	5' UTR (NM_005048, exon 1 of 13)	5' UTR (NM_005048, exon 1 of 13)	185	NM_005048	5746	Hs.570296	NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
13.5164-5	chr6	168559173	168559672	+	0	NA	Intergenic	Intergenic	67775	NR_134590	105378137	Hs.549668	NR_134590	ENSG00000237987	LOC105378137	-	uncharacterized LOC105378137	ncRNA
15.1004	chr6	17202768	17203267	+	0	NA	Intergenic	Intergenic	-78792	NM_001143942	221662	Hs.519904	NM_153020	ENSG00000112183	RBM24	RNPC6|dJ259A10.1	RNA binding motif protein 24	protein-coding
23.1069	chr14	73392811	73393310	+	0	NA	promoter-TSS (NM_181341)	promoter-TSS (NM_181341)	20	NM_181340	26094	Hs.331491	NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
20.8778	chrX	90377224	90377723	+	0	NA	Intergenic	Intergenic	-312124	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	poly(A) binding protein cytoplasmic 5	protein-coding
31.7134	chr16	78585437	78585936	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	452376	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
28.041-2	chr1	222081803	222082302	+	0	NA	Intergenic	Intergenic	-68044	NR_125989	101929771	Hs.557001	NR_125989	ENSG00000227925	LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
22.5806	chr6	91430060	91430559	+	0	NA	Intergenic	Intergenic	-133289	NM_145331	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
14.7108-6	chr3	177551081	177551580	+	0	NA	intron (NR_110826, intron 1 of 2)	intron (NR_110826, intron 1 of 2)	16677	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
17.7989-4	chr10	16715435	16715934	+	0	NA	intron (NM_152724, intron 7 of 7)	intron (NM_152724, intron 7 of 7)	143769	NM_012425	6251	Hs.524161	NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
15.4975	chr6	47408439	47408938	+	0	NA	Intergenic	Intergenic	-36837	NM_012120	23607	Hs.485518	NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
13.6552-2	chr11	47489693	47490192	+	0	NA	3' UTR (NM_001172640, exon 13 of 13)	3' UTR (NM_001172640, exon 13 of 13)	-19212	NM_005055	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
13.7572-4	chr11	117573876	117574375	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	93851	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
17.5945-2	chr9	71377435	71377934	+	0	NA	intron (NM_003558, intron 2 of 15)	intron (NM_003558, intron 2 of 15)	-17238	NM_138333	116224	Hs.655572	NM_138333	ENSG00000187866	FAM122A	C9orf42	family with sequence similarity 122A	protein-coding
25.1999	chr6	3628227	3628726	+	0	NA	Intergenic	Intergenic	123770	NM_183373	221749	Hs.484500	NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
18.6646	chr4	35134524	35135023	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1093258	NR_125902	101928622	Hs.631687	NR_125902	ENSG00000250954	LOC101928622	-	uncharacterized LOC101928622	ncRNA
13.0452-2	chr16	31469219	31469718	+	0	NA	promoter-TSS (NM_001288767)	promoter-TSS (NM_001288767)	-126	NM_001288767	79798	Hs.732945	NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
13.0452	chr6	57217990	57218489	+	0	NA	intron (NM_000947, intron 5 of 14)	intron (NM_000947, intron 5 of 14)	35824	NM_001282487	5558	Hs.654580	NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	primase (DNA) subunit 2	protein-coding
25.6864	chr13	100262803	100263302	+	0	NA	intron (NM_206808, intron 1 of 8)	L1M4|LINE|L1	4134	NM_206808	171425	Hs.655642	NM_206808	ENSG00000125246	CLYBL	CLB	citrate lyase beta like	protein-coding
13.3255-2	chr1	169497072	169497571	+	0	NA	exon (NM_000130, exon 17 of 25)	exon (NM_000130, exon 17 of 25)	-42113	NM_006996	10560	Hs.30246	NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
13.536	chr18	48395410	48395909	+	0	NA	Intergenic	Intergenic	-9773	NM_002396	4200	Hs.233119	NM_002396	ENSG00000082212	ME2	ODS1	malic enzyme 2	protein-coding
20.511	chr7	22693578	22694077	+	0	NA	intron (NR_122075, intron 2 of 4)	intron (NR_122075, intron 2 of 4)	11325	NR_122075	401312	Hs.583393	NR_122075	ENSG00000238033	LOC401312	-	uncharacterized LOC401312	ncRNA
26.6959	chr21	30476701	30477200	+	0	NA	intron (NM_001286634, intron 5 of 7)	intron (NM_001286634, intron 5 of 7)	12375	NM_001286619	56911	Hs.222802	NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
68.041	chr2	149822222	149822721	+	0	NA	intron (NM_004522, intron 11 of 25)	intron (NM_004522, intron 11 of 25)	18127	NR_111932	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
16.4782-3	chr6	81212435	81212934	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	396357	NM_183050	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
30.3339-2	chr2	230271814	230272313	+	0	NA	intron (NM_139072, intron 9 of 12)	intron (NM_139072, intron 9 of 12)	-136006	NM_001330157	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
19.7469	chr2	169408892	169409391	+	0	NA	intron (NM_203463, intron 2 of 9)	intron (NM_203463, intron 2 of 9)	-30312	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
19.2082-2	chr18	43407522	43408021	+	0	NA	intron (NM_213602, intron 1 of 5)	intron (NM_213602, intron 1 of 5)	2226	NM_213602	284266	Hs.287692	NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
27.3755-2	chr8	16668305	16668804	+	0	NA	Intergenic	Intergenic	191120	NM_019851	26281	Hs.199905	NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
23.5655	chr1	101775095	101775594	+	0	NA	Intergenic	Intergenic	-14049	NR_126402	104355286	Hs.568671	NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
19.1009-3	chr9	10014779	10015278	+	0	NA	intron (NM_002839, intron 4 of 45)	intron (NM_002839, intron 4 of 45)	215636	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
20.6601	chr10	51795071	51795570	+	0	NA	intron (NR_038275, intron 6 of 6)	L2a|LINE|L2	32243	NR_038275	100421577	Hs.712902	NR_038275	ENSG00000235618	FAM21EP	-	family with sequence similarity 21, member A pseudogene	pseudo
13.2698	chr6	169237885	169238384	+	0	NA	Intergenic	Intergenic	126343	NR_136250	105378146	Hs.343631	NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
14.318	chr5	61419970	61420469	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-181770	NM_001243952	3796	Hs.558351	NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
13.7779-2	chr8	38299775	38300274	+	0	NA	intron (NM_001174064, intron 2 of 18)	intron (NM_001174064, intron 2 of 18)	25339	NM_001174067	2260	Hs.264887	NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
26.8825	chr18	53156825	53157324	+	0	NA	intron (NM_001330604, intron 3 of 19)	intron (NM_001330604, intron 3 of 19)	10622	NR_039754	100616290		NR_039754	ENSG00000264571	MIR4529	-	microRNA 4529	ncRNA
25.7187	chr8	60028033	60028532	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	3485	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
13.3724	chr11	63389732	63390231	+	0	NA	Intergenic	Intergenic	-8040	NM_001128203	11145	Hs.502775	NM_007069	ENSG00000176485	PLA2G16	AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3	phospholipase A2 group XVI	protein-coding
22.0204	chr8	25692500	25692999	+	0	NA	Intergenic	Intergenic	209891	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
15.5596	chr1	31688807	31689306	+	0	NA	intron (NM_024522, intron 1 of 6)	intron (NM_024522, intron 1 of 6)	23678	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Sodium/potassium transporting ATPase interacting 1	protein-coding
38.1248	chr11	132000926	132001425	+	0	NA	intron (NM_001144058, intron 1 of 7)	intron (NM_001144058, intron 1 of 7)	-153021	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
14.1005-2	chr20	35887968	35888467	+	0	NA	Intergenic	MIR3|SINE|MIR	-2906	NM_001184731	2691	Hs.37023	NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
17.0553-7	chr1	29282583	29283082	+	0	NA	intron (NM_001166006, intron 1 of 14)	intron (NM_001166006, intron 1 of 14)	41744	NM_001166006	2035	Hs.175437	NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
45.3165	chr13	102567532	102568031	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	1214	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
18.1531-3	chr18	70211370	70211869	+	0	NA	5' UTR (NM_182511, exon 1 of 5)	5' UTR (NM_182511, exon 1 of 5)	104	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
20.4096	chr12	81544117	81544616	+	0	NA	intron (NM_001330243, intron 6 of 16)	UCON31|Unknown|Unknown	-7801	NR_039848	100616133		NR_039848	ENSG00000265227	MIR4699	-	microRNA 4699	ncRNA
21.5864	chr4	159509852	159510351	+	0	NA	intron (NR_045580, intron 2 of 17)	THE1C|LTR|ERVL-MaLR	67235	NM_001253728	59350	Hs.591686	NM_021634	ENSG00000171509	RXFP1	LGR7|RXFPR1	relaxin/insulin like family peptide receptor 1	protein-coding
30.5061	chr11	132011303	132011802	+	0	NA	intron (NM_001144058, intron 1 of 7)	intron (NM_001144058, intron 1 of 7)	-142644	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
13.8828-3	chr2	229706608	229707107	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	389951	NM_001330156	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
26.5365-2	chr6	28351007	28351506	+	0	NA	promoter-TSS (NR_133668)	promoter-TSS (NR_133668)	-40	NR_133668	9753	Hs.134816	NM_014724	ENSG00000158691	ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
15.817	chr17	60969017	60969516	+	0	NA	Intergenic	Intergenic	-52310	NR_030363	693218		NR_030363	ENSG00000207552	MIR633	MIRN633|hsa-mir-633	microRNA 633	ncRNA
28.6012	chr8	17472196	17472695	+	0	NA	intron (NM_006207, intron 3 of 6)	MIR|SINE|MIR	38503	NM_006207	5157	Hs.458573	NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
15.3462-3	chr2	1841161	1841660	+	0	NA	intron (NM_001329845, intron 21 of 24)	intron (NM_001329845, intron 21 of 24)	-93091	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
32.8067	chr14	30503281	30503780	+	0	NA	Intergenic	Intergenic	-106582	NM_001330069	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
13.6552-4	chr13	112282679	112283178	+	0	NA	intron (NR_135814, intron 1 of 1)	intron (NR_135814, intron 1 of 1)	34572	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
32.3284	chr5	163772256	163772755	+	0	NA	Intergenic	Intergenic	121903	NR_105064	101927835	Hs.735171	NR_105064	ENSG00000253236	LINC02143	-	long intergenic non-protein coding RNA 2143	ncRNA
37.5696	chr4	106472976	106473475	+	0	NA	promoter-TSS (NM_017700)	promoter-TSS (NM_017700)	-552	NM_017700	54848	Hs.585224	NM_017700	ENSG00000236699	ARHGEF38	-	Rho guanine nucleotide exchange factor 38	protein-coding
13.6151-2	chr13	113946707	113947206	+	0	NA	Intergenic	LTR24|LTR|ERV1	-4513	NM_005561	3916	Hs.494419	NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
13.4969	chr5	138611445	138611944	+	0	NA	intron (NM_001194954, intron 1 of 16)	intron (NM_001194954, intron 1 of 16)	2253	NM_001282278	9782	Hs.268939	NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
17.4958-2	chr6	23634284	23634783	+	0	NA	Intergenic	Intergenic	-491881	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
23.4104	chr2	187284944	187285443	+	0	NA	Intergenic	L1MB5|LINE|L1	-65692	NM_018471	55854	Hs.741180	NM_018471	ENSG00000065548	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
22.9073-4	chr12	5485929	5486428	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-55102	NM_001102654	4908	Hs.99171	NM_002527	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
13.8828-4	chr1	208542907	208543406	+	0	NA	Intergenic	Intergenic	-125491	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
35.8004	chr5	60018161	60018660	+	0	NA	Intergenic	L1PA15|LINE|L1	-22417	NM_018369	55789	Hs.482233	NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
16.5561	chr8	124417618	124418117	+	0	NA	Intergenic	L1MC4a|LINE|L1	-9162	NM_014109	29028	Hs.370834	NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family, AAA domain containing 2	protein-coding
14.9894-6	chr8	61495390	61495889	+	0	NA	intron (NM_001242644, intron 2 of 6)	intron (NM_001242644, intron 2 of 6)	66170	NM_001242644	5862	Hs.369017	NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
16.7572	chr4	48044975	48045474	+	0	NA	Intergenic	Intergenic	26435	NM_207330	152519	Hs.134190	NM_207330	ENSG00000163293	NIPAL1	NPAL1	NIPA like domain containing 1	protein-coding
45.2871-2	chr3	109682741	109683240	+	0	NA	Intergenic	L1PA17|LINE|L1	361315	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
14.7756	chr6	26687271	26687770	+	0	NA	Intergenic	tRNA-Ala-GCY|tRNA|tRNA	-27540	NM_024639	79692	Hs.126280	NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
14.1908	chr9	27665086	27665585	+	0	NA	Intergenic	LTR9|LTR|ERV1	-91471	NM_001256054	203228	Hs.493639	NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENNL72|FTDALS|FTDALS1	chromosome 9 open reading frame 72	protein-coding
20.8884	chr4	139812021	139812520	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	121530	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
14.8678-2	chr7	39124013	39124512	+	0	NA	intron (NM_001166018, intron 2 of 10)	intron (NM_001166018, intron 2 of 10)	-71095	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA
16.4016	chr7	112645739	112646238	+	0	NA	Intergenic	L1PA15|LINE|L1	-10290	NR_110162	101928036	Hs.120006	NR_110162	ENSG00000234520	HRAT17	-	heart tissue-associated transcript 17	ncRNA
40.8407	chr18	69567213	69567712	+	0	NA	Intergenic	L1PA16|LINE|L1	-118000	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
15.6864	chr18	56806790	56807289	+	0	NA	promoter-TSS (NM_001307941)	promoter-TSS (NM_001307941)	-50	NM_001307941	90701	Hs.45107	NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
17.8252	chr20	30300291	30300790	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-8770	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
18.2974	chr2	201139312	201139811	+	0	NA	Intergenic	Intergenic	-31043	NM_001282743	26010	Hs.120323	NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
16.6354-3	chr5	91443509	91444008	+	0	NA	Intergenic	Intergenic	-764568	NM_001329672	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
23.2975	chr7	154671265	154671764	+	0	NA	intron (NM_001936, intron 20 of 25)	MER34B|LTR|ERV1	-48713	NR_024476	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
14.4855	chr4	130256957	130257456	+	0	NA	Intergenic	Intergenic	239924	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
25.3462-3	chr7	47764145	47764644	+	0	NA	Intergenic	Intergenic	-36680	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA
14.4129-2	chr2	206494038	206494537	+	0	NA	Intergenic	Intergenic	-52937	NM_201267	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
14.3415-2	chr4	179699586	179700085	+	0	NA	Intergenic	Intergenic	-870745	NR_108092	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
13.4775-4	chr21	19616965	19617464	+	0	NA	promoter-TSS (NM_001204174)	promoter-TSS (NM_001204174)	64	NM_024944	140578	Hs.283725	NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
16.3639	chr5	125800499	125800998	+	0	NA	promoter-TSS (NM_001146322)	promoter-TSS (NM_001146322)	-39	NM_001146322	65983	Hs.363558	NM_023927	ENSG00000155324	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
17.4958	chr7	36320095	36320594	+	0	NA	intron (NM_030636, intron 3 of 7)	intron (NM_030636, intron 3 of 7)	86438	NM_001199707	23366	Hs.6224	NM_015314	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
14.6344	chr5	62038418	62038917	+	0	NA	Intergenic	Intergenic	164105	NR_073584	101180901	Hs.482269	NR_073584	ENSG00000086200	IPO11-LRRC70	-	IPO11-LRRC70 readthrough	ncRNA
15.7349	chr1	38455563	38456062	+	0	NA	promoter-TSS (NM_006802)	promoter-TSS (NM_006802)	-30	NM_006802	10946	Hs.77897	NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
17.167-2	chr12	49690296	49691008	+	0	NA	non-coding (NR_120449, exon 5 of 8)	non-coding (NR_120449, exon 5 of 8)	1743	NM_006262	5630	Hs.37044	NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
13.4008	chrX	126036270	126036769	+	0	NA	Intergenic	L1PREC2|LINE|L1	82772	NM_001122716	100130613	Hs.130370	NM_001122716	ENSG00000183631	PRR32	CXorf64	proline rich 32	protein-coding
15.391	chr10	63835489	63835988	+	0	NA	intron (NM_032199, intron 8 of 9)	intron (NM_032199, intron 8 of 9)	26768	NM_001244638	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
14.1341	chr6	75303840	75304339	+	0	NA	intron (NR_110856, intron 2 of 3)	intron (NR_110856, intron 2 of 3)	524922	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
13.2883-2	chr8	121823841	121824340	+	0	NA	5' UTR (NM_021021, exon 1 of 7)	5' UTR (NM_021021, exon 1 of 7)	219	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
15.6225	chr5	142520305	142520804	+	0	NA	intron (NM_015071, intron 19 of 22)	intron (NM_015071, intron 19 of 22)	-51511	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
13.5655	chr5	155300241	155300740	+	0	NA	Intergenic	L1PB4|LINE|L1	-453277	NM_172244	6444	Hs.387207	NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
16.6959-2	chr2	149666541	149667040	+	0	NA	intron (NM_004522, intron 1 of 25)	L2a|LINE|L2	33998	NM_004522	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
15.1856-2	chr3	183094902	183095401	+	0	NA	intron (NM_015078, intron 3 of 29)	L1PA8|LINE|L1	50906	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
40.8249	chr6	43842014	43842513	+	0	NA	Intergenic	Intergenic	-16502	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
16.517	chr5	157327619	157328118	+	0	NA	Intergenic	L1MD2|LINE|L1	-41685	NM_014666	9685	Hs.644000	NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
13.2422	chr10	74091216	74091715	+	0	NA	Intergenic	Intergenic	23442	NM_017626	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
14.2136-4	chr9	128211453	128211952	+	0	NA	intron (NM_001006617, intron 10 of 11)	intron (NM_001006617, intron 10 of 11)	150533	NM_001282681	26130	Hs.42376	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
14.7108-5	chr1	117014878	117015377	+	0	NA	intron (NR_125973, intron 2 of 3)	intron (NR_125973, intron 2 of 3)	6321	NR_125973	101929023	Hs.668091	NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
17.7728-2	chr4	173967952	173968451	+	0	NA	Intergenic	Intergenic	-121703	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19.9568	chr4	140075678	140076177	+	0	NA	intron (NM_001331036, intron 1 of 9)	MER4A|LTR|ERV1	-15297	NM_201999	1998	Hs.634040	NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
25.2724	chr13	115025487	115025986	+	0	NA	intron (NM_001078645, intron 14 of 17)	intron (NM_001078645, intron 14 of 17)	-13567	NR_039724	100616227		NR_039724	ENSG00000265450	MIR4502	-	microRNA 4502	ncRNA
16.0906	chr18	69723218	69723717	+	0	NA	Intergenic	Intergenic	-274005	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
20.2965	chr6	158969418	158969917	+	0	NA	intron (NM_020823, intron 1 of 16)	intron (NM_020823, intron 1 of 16)	12199	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
24.5346-4	chr7	11232731	11233230	+	0	NA	Intergenic	MER61-int|LTR|ERV1	219481	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
15.2143-3	chr7	82896312	82896811	+	0	NA	Intergenic	Intergenic	-104364	NM_014510	27445	Hs.12376	NM_014510	ENSG00000186472	PCLO	ACZ|PCH3	piccolo presynaptic cytomatrix protein	protein-coding
13.3255-6	chr18	68131464	68131963	+	0	NA	Intergenic	Intergenic	-79886	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
17.4958-3	chr18	55113455	55113954	+	0	NA	intron (NM_004852, intron 1 of 1)	intron (NM_004852, intron 1 of 1)	10787	NM_004852	9480	Hs.194725	NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
13.3255-3	chr15	94774099	94774598	+	0	NA	Intergenic	Intergenic	-67082	NM_018349	55784	Hs.33368	NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
20.9259	chr1	118643486	118643985	+	0	NA	intron (NM_206996, intron 5 of 48)	L2c|LINE|L2	84113	NM_206996	200162	Hs.528821	NM_206996	ENSG00000155761	SPAG17	CT143|PF6	sperm associated antigen 17	protein-coding
18.4771-3	chr6	111873145	111873644	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	15169	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
28.041	chr4	157058860	157059359	+	0	NA	Intergenic	Intergenic	-184061	NM_001334	1519	Hs.75262	NM_001334	ENSG00000256043	CTSO	CTSO1	cathepsin O	protein-coding
15.2143	chr4	78560134	78560633	+	0	NA	Intergenic	L1MA7|LINE|L1	127476	NM_006419	10563	Hs.100431	NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
20.8938	chr18	65085124	65085623	+	0	NA	Intergenic	Intergenic	-98410	NR_033921	643542	Hs.652901	NR_033921	ENSG00000265533	LOC643542	-	uncharacterized LOC643542	ncRNA
13.1695-3	chr15	23748782	23749281	+	0	NA	Intergenic	MER61F|LTR|ERV1	-56641	NM_001304388	283685		NM_182561	ENSG00000174450	GOLGA6L2	CT105	golgin A6 family-like 2	protein-coding
17.2125	chr9	22682399	22682898	+	0	NA	non-coding (NR_038977, exon 3 of 6)	non-coding (NR_038977, exon 3 of 6)	36449	NR_038977	441389		NR_038977	ENSG00000234840	LINC01239	-	long intergenic non-protein coding RNA 1239	ncRNA
18.2102	chr12	11859316	11859815	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	56777	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
19.7881	chr7	66878579	66879078	+	0	NA	Intergenic	Intergenic	77865	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
13.5164	chr18	57515299	57515798	+	0	NA	Intergenic	Intergenic	-51644	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
15.0169-4	chr14	36908777	36909276	+	0	NA	Intergenic	Intergenic	73964	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
13.2975	chr3	175990999	175991498	+	0	NA	Intergenic	Intergenic	-241643	NR_107017	102465858		NR_107017	ENSG00000283333	MIR7977	hsa-mir-7977	microRNA 7977	ncRNA
18.2974-3	chr20	40104658	40105157	+	0	NA	intron (NM_032221, intron 16 of 36)	intron (NM_032221, intron 16 of 36)	-109409	NM_052846	90187	Hs.726525	NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
13.2331	chr9	16417030	16417529	+	0	NA	3' UTR (NM_017637, exon 7 of 7)	3' UTR (NM_017637, exon 7 of 7)	-140968	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
25.2143	chr1	85193272	85193771	+	0	NA	Intergenic	L1PA15|LINE|L1	-37281	NM_001166293	117178	Hs.22587	NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
19.7881-4	chr1	59680417	59680916	+	0	NA	Intergenic	Intergenic	-68187	NR_027120	729467	Hs.662291	NR_027120	ENSG00000224609	HSD52	-	uncharacterized LOC729467	ncRNA
17.8252-3	chr7	23840323	23840822	+	0	NA	intron (NM_001260505, intron 22 of 22)	L1ME1|LINE|L1	90627	NM_001260504	56164	Hs.309767	NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
17.2125-4	chr18	25757816	25758597	+	0	NA	promoter-TSS (NM_001792)	promoter-TSS (NM_001792)	-796	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
13.6452-2	chr9	28296335	28296834	+	0	NA	intron (NM_152570, intron 4 of 6)	intron (NM_152570, intron 4 of 6)	422719	NM_152570	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
13.9686-4	chr13	100355062	100355561	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	-12086	NR_046526	100874063	Hs.577064	NR_046526	ENSG00000227659	CLYBL-AS2	-	CLYBL antisense RNA 2	ncRNA
13.019	chr6	119221058	119221557	+	0	NA	intron (NM_014034, intron 1 of 3)	intron (NM_014034, intron 1 of 3)	6066	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
19.431-2	chr14	95990278	95990777	+	0	NA	Intergenic	Intergenic	9439	NR_003002	677768	Hs.448753	NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
16.216-2	chr7	140103641	140104140	+	0	NA	promoter-TSS (NM_001008749)	promoter-TSS (NM_001008749)	47	NM_001008749	401409	Hs.583545	NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
17.4958-5	chr18	25756825	25757324	+	0	NA	5' UTR (NM_001792, exon 1 of 16)	5' UTR (NM_001792, exon 1 of 16)	336	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
15.8004-2	chr7	99020217	99020716	+	0	NA	intron (NM_001198879, intron 8 of 8)	LTR9|LTR|ERV1	13865	NM_003910	8896	Hs.380233	NM_003910	ENSG00000106245	BUD31	Cwc14|EDG-2|EDG2|G10|YCR063W|fSAP17	BUD31 homolog	protein-coding
14.2481	chr6	18387353	18387852	+	0	NA	promoter-TSS (NM_182757)	promoter-TSS (NM_182757)	21	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
13.0892	chr11	85629672	85630171	+	0	NA	intron (NM_173556, intron 11 of 11)	MER4C|LTR|ERV1	63777	NM_173556	220047	Hs.567774	NM_173556	ENSG00000150676	CCDC83	CT148|HSD9	coiled-coil domain containing 83	protein-coding
19.0309-6	chr18	54528319	54528818	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	209952	NM_052834	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
15.4975-2	chr5	6791190	6791689	+	0	NA	Intergenic	Intergenic	36595	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
15.2288-2	chr6	157982415	157982914	+	0	NA	intron (NM_153746, intron 2 of 8)	intron (NM_153746, intron 2 of 8)	32500	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
14.8149	chr8	135730948	135731447	+	0	NA	Intergenic	L1MC|LINE|L1	-5905	NM_001289394	57623	Hs.446172	NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
20.9637	chr2	172917370	172917869	+	0	NA	intron (NM_001322279, intron 1 of 9)	intron (NM_001322279, intron 1 of 9)	-32589	NM_001038493	1745	Hs.407015	NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
15.2433	chr7	145699694	145700193	+	0	NA	Intergenic	Intergenic	-113510	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
16.925-6	chr18	48345766	48346265	+	0	NA	exon (NM_001127176, exon 2 of 7)	exon (NM_001127176, exon 2 of 7)	419	NM_001127175	83876	Hs.30495	NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding
17.986	chr11	21675465	21675964	+	0	NA	Intergenic	Intergenic	-539008	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19.431-4	chr9	71795527	71796026	+	0	NA	intron (NM_201629, intron 1 of 20)	intron (NM_201629, intron 1 of 20)	6805	NM_201629	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
23.5262	chr12	120826383	120827131	+	0	NA	Intergenic	MIRc|SINE|MIR	-19774	NM_002442	4440	Hs.158311	NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
16.5561-2	chr4	124521044	124521543	+	0	NA	Intergenic	Intergenic	-52647	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
23.7059-2	chr18	63102786	63103285	+	0	NA	Intergenic	Intergenic	-314453	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
69.0309-3	chr6	52217223	52217722	+	0	NA	Intergenic	Intergenic	-9454	NM_133367	85315	Hs.239388	NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
16.9465	chr6	134996150	134996649	+	0	NA	Intergenic	Intergenic	-135256	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA
13.4486	chr3	192734165	192734664	+	0	NA	Intergenic	Intergenic	-98464	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
17.3283	chrX	117103230	117103729	+	0	NA	intron (NM_001168303, intron 1 of 6)	intron (NM_001168303, intron 1 of 6)	4222	NM_033495	90293	Hs.348262	NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
20.2733	chr8	86089849	86090755	+	0	NA	intron (NM_001951, intron 1 of 7)	intron (NM_001951, intron 1 of 7)	683	NM_001083588	1875	Hs.445758	NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
46.5561	chr7	115364475	115364974	+	0	NA	Intergenic	L1ME3A|LINE|L1	243643	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
23.0016	chr18	67067379	67067878	+	0	NA	promoter-TSS (NM_152721)	promoter-TSS (NM_152721)	-656	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
15.1145-2	chr6	33596256	33596755	+	0	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	5017	NR_134628	101929188	Hs.658327	NR_134628		LOC101929188	-	uncharacterized LOC101929188	ncRNA
28.6646	chr18	71850305	71850804	+	0	NA	Intergenic	Intergenic	34808	NM_014177	29090	Hs.532835	NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
18.041-2	chr18	74204234	74205205	+	0	NA	non-coding (NR_136504, exon 2 of 2)	non-coding (NR_136504, exon 2 of 2)	1111	NR_136504	101927989	Hs.665186	NR_136504	ENSG00000265778	LOC101927989	-	uncharacterized LOC101927989	ncRNA
13.9362	chr1	87666471	87666970	+	0	NA	Intergenic	Intergenic	-11632	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
13.1515	chr8	94752714	94753213	+	0	NA	TTS (NR_027259)	TTS (NR_027259)	261	NM_203390	389677	Hs.606916	NM_203390	ENSG00000183808	RBM12B	MGC:33837	RNA binding motif protein 12B	protein-coding
30.804	chr7	10161216	10161715	+	0	NA	Intergenic	Intergenic	487565	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
24.6852	chr12	104193508	104194007	+	0	NA	intron (NM_001031701, intron 4 of 13)	intron (NM_001031701, intron 4 of 13)	41218	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
22.2113	chr6	126188513	126189012	+	0	NA	intron (NM_001122842, intron 3 of 15)	intron (NM_001122842, intron 3 of 15)	-48758	NR_126386	104355145	Hs.590370	NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
14.6218-3	chr1	33937847	33938346	+	0	NA	promoter-TSS (NM_145238)	promoter-TSS (NM_145238)	-136	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
18.2391-4	chr14	46110783	46111282	+	0	NA	Intergenic	Intergenic	-388427	NM_018353	55320	Hs.732769	NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
30.4624	chr15	96743844	96744343	+	0	NA	intron (NR_125738, intron 2 of 4)	intron (NR_125738, intron 2 of 4)	-125064	NM_001145155	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
22.1753	chr1	166458780	166459663	+	0	NA	Intergenic	Intergenic	-113932	NR_002925	116123	Hs.348539	NM_138784	ENSG00000215834	FMO9P	-	flavin containing monooxygenase 9 pseudogene	pseudo
16.3451-8	chr21	37173641	37174140	+	0	NA	Intergenic	L1PBa1|LINE|L1	80877	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
16.6555	chr13	111792404	111792903	+	0	NA	intron (NM_001113512, intron 1 of 17)	L2a|LINE|L2	8259	NR_046516	100874226	Hs.577834	NR_046516		ARHGEF7-AS1	-	ARHGEF7 antisense RNA 1	ncRNA
14.1908-4	chr1	230999190	230999689	+	0	NA	intron (NM_001136494, intron 3 of 5)	intron (NM_001136494, intron 3 of 5)	4863	NM_032800	84886	Hs.520494	NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
19.6658	chr3	178617873	178618372	+	0	NA	Intergenic	Intergenic	-39929	NR_126561	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
23.0103	chr11	113969555	113970054	+	0	NA	intron (NM_001018011, intron 2 of 6)	intron (NM_001018011, intron 2 of 6)	38516	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
32.5181	chr8	8729450	8729949	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	21432	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
19.5468-5	chr18	29523163	29523984	+	0	NA	promoter-TSS (NM_014939)	promoter-TSS (NM_014939)	-482	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
89.393	chr1	218422772	218423271	+	0	NA	Intergenic	Intergenic	-35608	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
15.0307-2	chr12	79472341	79472840	+	0	NA	intron (NM_001135806, intron 2 of 9)	intron (NM_001135806, intron 2 of 9)	33157	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
14.4733-3	chr4	173960734	173961233	+	0	NA	intron (NM_001034845, intron 12 of 12)	intron (NM_001034845, intron 12 of 12)	-128921	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
13.8828-2	chr6	98783384	98783883	+	0	NA	Intergenic	Intergenic	311226	NR_031579	100302164		NR_031579	ENSG00000238367	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
33.4486	chr7	11789197	11789696	+	0	NA	intron (NM_015204, intron 1 of 26)	HERVK22-int|LTR|ERVK	82378	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin type 1 domain containing 7A	protein-coding
14.3297-3	chr3	192624451	192624950	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	11250	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
20.9745	chr13	39680226	39680725	+	0	NA	Intergenic	LTR18B|LTR|ERVL	68027	NM_001017370	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
15.4363	chr2	202122885	202123384	+	0	NA	intron (NM_001080125, intron 1 of 8)	intron (NM_001080125, intron 1 of 8)	380	NM_001080125	841	Hs.599762	NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
15.4821-3	chr18	46476137	46476636	+	0	NA	promoter-TSS (NM_001190822)	promoter-TSS (NM_001190822)	-683	NM_001190822	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
25.7675	chr3	189523971	189524470	+	0	NA	intron (NM_001329146, intron 1 of 10)	intron (NM_001329146, intron 1 of 10)	16771	NM_001114982	8626	Hs.137569	NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
24.8945	chr2	209410081	209410580	+	0	NA	intron (NR_136588, intron 1 of 5)	LTR16C|LTR|ERVL	2963	NR_136588	101927960	Hs.159960	NR_136588		LOC101927960	-	uncharacterized LOC101927960	ncRNA
17.3755	chr4	37769104	37769603	+	0	NA	Intergenic	Intergenic	-58929	NM_018290	55276	Hs.23363	NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
15.157	chr18	55469554	55470053	+	0	NA	intron (NM_005603, intron 1 of 27)	CpG	524	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
14.2251	chr18	33077252	33077751	+	0	NA	5' UTR (NM_001308064, exon 1 of 5)	5' UTR (NM_001308064, exon 1 of 5)	112	NM_001308064	125476	Hs.464903	NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
89.2445	chr13	112325956	112326455	+	0	NA	Intergenic	Intergenic	77849	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
25.2578	chr21	29697811	29698310	+	0	NA	Intergenic	L1MDa|LINE|L1	-97074	NR_126012	101927973	Hs.570414	NR_126012	ENSG00000236532	LINC01695	-	long intergenic non-protein coding RNA 1695	ncRNA
25.2724-2	chrX	131428124	131428623	+	0	NA	intron (NR_110410, intron 2 of 2)	intron (NR_110410, intron 2 of 2)	-74865	NM_001271186	57826	Hs.119889	NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
25.5129	chr2	97498795	97499294	+	0	NA	3' UTR (NM_017623, exon 8 of 8)	3' UTR (NM_017623, exon 8 of 8)	10714	NM_144994	200539	Hs.643430	NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
15.9517-2	chr2	234389414	234389913	+	0	NA	intron (NM_018218, intron 30 of 30)	intron (NM_018218, intron 30 of 30)	84573	NM_018218	55230	Hs.96513	NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
20.8619	chr7	4764327	4764826	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	42646	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
14.9894-7	chr2	217605576	217606075	+	0	NA	Intergenic	Intergenic	-45553	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
15.0307-3	chr2	188755298	188755797	+	0	NA	Intergenic	LTR43|LTR|ERV1	-336315	NM_001329239	7035	Hs.516578	NM_006287	ENSG00000003436	TFPI	EPI|LACI|TFI|TFPI1	tissue factor pathway inhibitor	protein-coding
14.908-2	chr11	84120045	84120544	+	0	NA	intron (NM_001142699, intron 7 of 27)	intron (NM_001142699, intron 7 of 27)	-91912	NM_001206769	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
17.0553-5	chr3	137801279	137801778	+	0	NA	intron (NM_173543, intron 8 of 15)	intron (NM_173543, intron 8 of 15)	30794	NM_001170538	199221	Hs.351403	NM_173543	ENSG00000158163	DZIP1L	DZIP2	DAZ interacting zinc finger protein 1 like	protein-coding
16.5365	chr2	208795752	208796251	+	0	NA	intron (NM_001080475, intron 4 of 7)	intron (NM_001080475, intron 4 of 7)	94283	NM_001080475	389072	Hs.159188	NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
23.3068-2	chr2	234862102	234862601	+	0	NA	intron (NM_024080, intron 9 of 25)	intron (NM_024080, intron 9 of 25)	36308	NM_024080	79054	Hs.366053	NM_024080	ENSG00000144481	TRPM8	LTRPC6|TRPP8	transient receptor potential cation channel subfamily M member 8	protein-coding
21.945	chr13	80603232	80603731	+	0	NA	Intergenic	Intergenic	18269	NR_104138	101515984	Hs.569290	NR_104138		LINC01080	TCONS_00021856	long intergenic non-protein coding RNA 1080	ncRNA
16.925-4	chr10	81947183	81947682	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	16815	NM_001278408	311	Hs.530291	NM_001157	ENSG00000122359	ANXA11	ANX11|CAP50	annexin A11	protein-coding
21.261	chr18	51795606	51796105	+	0	NA	promoter-TSS (NM_007195)	promoter-TSS (NM_007195)	6	NM_007195	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB	DNA polymerase iota	protein-coding
31.5243-2	chr1	30351361	30351860	+	0	NA	Intergenic	Intergenic	158849	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
16.1083	chr1	240893103	240893602	+	0	NA	intron (NR_128706, intron 3 of 3)	intron (NR_128706, intron 3 of 3)	-117890	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
23.5655-2	chr2	87807088	87807587	+	0	NA	intron (NR_024204, intron 3 of 3)	intron (NR_024204, intron 3 of 3)	52363	NR_024205	112597	Hs.652166	NM_052871	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
18.6328	chr2	176470736	176471235	+	0	NA	Intergenic	Intergenic	396088	NM_001305009	80856	Hs.209561	NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
21.2033	chr2	145451945	145452444	+	0	NA	intron (NR_033870, intron 1 of 4)	intron (NR_033870, intron 1 of 4)	26660	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
30.4624-2	chr18	44256335	44256834	+	0	NA	Intergenic	Intergenic	-19588	NM_144612	125336	Hs.345877	NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology domains 1	protein-coding
17.2816-2	chr10	3998101	3998600	+	0	NA	Intergenic	Intergenic	-35002	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
19.393	chr7	129193918	129194417	+	0	NA	Intergenic	Intergenic	51847	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
22.9243	chr4	124733184	124733683	+	0	NA	intron (NR_027106, intron 1 of 2)	intron (NR_027106, intron 1 of 2)	38014	NR_027106	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
15.7512-3	chr6	151201273	151201772	+	0	NA	intron (NM_001242769, intron 4 of 7)	L1MA6|LINE|L1	14053	NM_001242768	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
21.1691	chr12	64076375	64076874	+	0	NA	Intergenic	Intergenic	-14270	NM_173812	283417	Hs.533644	NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
16.3264	chr2	8274658	8275157	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-157962	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
24.168-2	chr16	85749193	85749692	+	0	NA	intron (NM_206967, intron 2 of 3)	intron (NM_206967, intron 2 of 3)	25864	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
16.5758	chr9	72695307	72695806	+	0	NA	intron (NM_001347990, intron 2 of 11)	intron (NM_001347990, intron 2 of 11)	37059	NR_125850	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
43.1069	chr7	158032246	158032745	+	0	NA	intron (NM_001308267, intron 2 of 21)	intron (NM_001308267, intron 2 of 21)	293010	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
15.4821-4	chr4	114604208	114604707	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	78626	NM_001321590	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
37.5449-3	chr18	69839040	69839539	+	0	NA	Intergenic	Intergenic	372434	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
19.7062	chr15	51591597	51592096	+	0	NA	intron (NM_000103, intron 1 of 9)	intron (NM_000103, intron 1 of 9)	-11311	NM_001347250	1588	Hs.260074	NM_000103	ENSG00000137869	CYP19A1	ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM	cytochrome P450 family 19 subfamily A member 1	protein-coding
42.1538	chr9	7777742	7778241	+	0	NA	Intergenic	Intergenic	21815	NM_001318059	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
19.431-5	chr6	108145141	108145640	+	0	NA	5' UTR (NM_001286408, exon 1 of 7)	5' UTR (NM_001286408, exon 1 of 7)	131	NM_198081	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
31.5243	chr6	97107198	97107697	+	0	NA	Intergenic	L1PA16|LINE|L1	96446	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
16.6756-2	chrX	71319836	71320335	+	0	NA	intron (NM_001013627, intron 1 of 7)	Tigger3a|DNA|TcMar-Tigger	31666	NM_001024455	340526	Hs.512180	NM_001024455	ENSG00000242732	RGAG4	6430402L03Rik|MAR5|MART5	retrotransposon gag domain containing 4	protein-coding
17.9317-3	chr18	45457607	45458106	+	0	NA	promoter-TSS (NM_005901)	promoter-TSS (NM_005901)	-339	NM_001003652	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
19.0309-7	chr18	42995470	42995969	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	91282	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
34.7886	chr1	218312707	218313206	+	0	NA	Intergenic	L1M4b|LINE|L1	96109	NR_110794	101929631	Hs.407614	NR_110794	ENSG00000232100	LINC01653	-	long intergenic non-protein coding RNA 1653	ncRNA
14.9621-3	chr18	69117409	69117908	+	0	NA	Intergenic	Intergenic	128534	NR_038326	100505776	Hs.202072	NR_038325	ENSG00000260676	LINC01541	UTAT39	long intergenic non-protein coding RNA 1541	ncRNA
20.3152-2	chr13	111177828	111178327	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	-17551	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
18.1816-3	chr14	86339322	86339821	+	0	NA	Intergenic	Intergenic	-61451	NR_110155	101928767	Hs.536380	NR_110155		LOC101928767	-	uncharacterized LOC101928767	ncRNA
18.4771-2	chr9	129787544	129788043	+	0	NA	intron (NM_001190728, intron 3 of 16)	L1ME1|LINE|L1	63289	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
14.1908-2	chr8	6405027	6405526	+	0	NA	intron (NM_001118887, intron 1 of 8)	intron (NM_001118887, intron 1 of 8)	15508	NM_001118887	285	Hs.583870	NM_001147	ENSG00000091879	ANGPT2	AGPT2|ANG2	angiopoietin 2	protein-coding
13.9794	chr2	14541965	14542464	+	0	NA	Intergenic	Intergenic	-1132	NR_103814	100499171	Hs.565606	NR_103814	ENSG00000230448	LINC00276	NCRNA00276	long intergenic non-protein coding RNA 276	ncRNA
17.3049	chr2	9034113	9034612	+	0	NA	intron (NR_135606, intron 4 of 12)	intron (NR_135606, intron 4 of 12)	-56607	NM_020738	57498	Hs.9873	NM_020738	ENSG00000134313	KIDINS220	ARMS	kinase D interacting substrate 220	protein-coding
16.1979	chr1	208274047	208274546	+	0	NA	intron (NM_025179, intron 5 of 31)	intron (NM_025179, intron 5 of 31)	143369	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
40.3574-2	chr3	155755127	155755626	+	0	NA	Intergenic	Intergenic	-82961	NM_172160	7881	Hs.654519	NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A member regulatory beta subunit 1	protein-coding
14.9621-2	chr5	18792260	18792759	+	0	NA	Intergenic	LTR18A|LTR|ERVL	985126	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
15.2143-2	chr12	99462667	99463166	+	0	NA	intron (NM_152788, intron 16 of 25)	intron (NM_152788, intron 16 of 25)	-24221	NR_110095	101928937	Hs.555499	NR_110095	ENSG00000258039	LOC101928937	-	uncharacterized LOC101928937	ncRNA
14.389	chr11	61461742	61462241	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	14086	NM_006133	747	Hs.241564	NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR	diacylglycerol lipase alpha	protein-coding
14.6852	chr3	68372177	68372676	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	-177362	NR_135532	105377146	Hs.567895	NR_135532		LOC105377146	-	uncharacterized LOC105377146	ncRNA
30.3339	chr1	223421798	223422297	+	0	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	-105423	NM_003268	7100	Hs.604542	NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
22.1325-2	chr12	119212063	119212562	+	0	NA	Intergenic	CpG	-12828	NR_134998	105370014	Hs.550870	NR_134998	ENSG00000256750	LOC105370014	-	uncharacterized LOC105370014	ncRNA
13.8091-3	chr4	85773100	85773599	+	0	NA	intron (NM_014991, intron 4 of 67)	MER44C|DNA|TcMar-Tigger	114195	NM_014991	23001	Hs.480116	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
52.2768	chr18	71423236	71423735	+	0	NA	Intergenic	Intergenic	391514	NM_152676	201456	Hs.664011	NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
13.6452	chr6	80520464	80520963	+	0	NA	intron (NR_131786, intron 2 of 4)	Tigger16b|DNA|TcMar-Tigger	1250	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
27.3755	chr19	34801329	34801828	+	0	NA	intron (NM_014686, intron 2 of 13)	intron (NM_014686, intron 2 of 13)	-54067	NM_001289789	2821	Hs.466471	NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
22.9073	chr9	82174580	82175079	+	0	NA	Intergenic	Intergenic	-11859	NM_001282748	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
21.9246	chr5	171233976	171234475	+	0	NA	Intergenic	Intergenic	21349	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding
26.6959-3	chr8	107642660	107643159	+	0	NA	intron (NM_001198532, intron 2 of 15)	intron (NM_001198532, intron 2 of 15)	-27127	NM_181354	55074	Hs.127286	NM_018002	ENSG00000164830	OXR1	Nbla00307|TLDC3	oxidation resistance 1	protein-coding
13.7366-2	chr6	148859814	148860313	+	0	NA	intron (NM_001346509, intron 9 of 12)	intron (NM_001346509, intron 9 of 12)	29776	NM_001346509	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
16.4782-4	chr6	41286421	41286920	+	0	NA	Intergenic	Intergenic	-16858	NM_004828	9436	Hs.194721	NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
13.3724-2	chr14	62076154	62076653	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-39032	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
25.4212	chr14	76812995	76813494	+	0	NA	Intergenic	Intergenic	-24446	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
18.1816-2	chr2	129067091	129067590	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	8831	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
15.1999-2	chr13	102106166	102106665	+	0	NA	exon (NM_004791, exon 2 of 11)	exon (NM_004791, exon 2 of 11)	1471	NM_001271755	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
21.0127	chr5	143578609	143579108	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	28421	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
17.5945-3	chr3	77980326	77980825	+	0	NA	Intergenic	Intergenic	833412	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
14.6218-2	chr7	91755586	91756085	+	0	NA	intron (NM_000786, intron 4 of 9)	intron (NM_000786, intron 4 of 9)	8005	NM_000786	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
15.4668-2	chr1	204256079	204256578	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	72729	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
16.216	chr12	75972184	75972683	+	0	NA	Intergenic	L2a|LINE|L2	-67015	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
20.4624	chr18	46474448	46474947	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	1006	NM_001190822	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
15.7675	chr20	45948443	45948942	+	0	NA	non-coding (NR_024594, exon 1 of 1)	non-coding (NR_024594, exon 1 of 1)	1446	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
47.4473	chr18	25625280	25625779	+	0	NA	intron (NM_001792, intron 2 of 15)	L2c|LINE|L2	-8980	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
13.4775-2	chr8	74225885	74226384	+	0	NA	intron (NR_125388, intron 5 of 5)	intron (NR_125388, intron 5 of 5)	19297	NM_172037	157506	Hs.244940	NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding
20.4048	chr2	238583345	238583844	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-17213	NM_001137551	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
21.7198	chr13	111208097	111208596	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	5738	NM_017817	55647	Hs.743563	NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
18.1248	chr11	129327170	129327669	+	0	NA	Intergenic	Intergenic	81538	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
15.6225-2	chr16	89904044	89904543	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	9386	NM_032451	84501	Hs.461786	NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
24.6471	chr8	82644787	82645286	+	0	NA	exon (NM_152284, exon 1 of 5)	exon (NM_152284, exon 1 of 5)	348	NM_152284	92421	Hs.183861	NM_152284	ENSG00000164695	CHMP4C	SNF7-3|Shax3|VPS32C	charged multivesicular body protein 4C	protein-coding
23.9577	chr2	190538983	190539482	+	0	NA	Intergenic	CpG	-1479	NM_144708	150709	Hs.60772	NM_144708	ENSG00000151687	ANKAR	-	ankyrin and armadillo repeat containing	protein-coding
13.4199	chr1	210928196	210928695	+	0	NA	intron (NM_172362, intron 10 of 10)	intron (NM_172362, intron 10 of 10)	379012	NM_002238	3756	Hs.553187	NM_002238	ENSG00000143473	KCNH1	EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1	potassium voltage-gated channel subfamily H member 1	protein-coding
13.2975-2	chr1	65352523	65353022	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	79480	NM_001321857	3716	Hs.207538	NM_002227	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
14.389-2	chr12	27164965	27165464	+	0	NA	intron (NM_016551, intron 1 of 11)	MIRb|SINE|MIR	2125	NM_016551	51768	Hs.438641	NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
21.4569	chr14	63974679	63975178	+	0	NA	promoter-TSS (NM_001282181)	promoter-TSS (NM_001282181)	28	NM_001282182	5529	Hs.334868	NM_006246	ENSG00000154001	PPP2R5E	-	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
23.8195	chr2	175644078	175644577	+	0	NA	Intergenic	Intergenic	-15127	NM_000079	1134	Hs.434479	NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
20.716	chr9	100864173	100864672	+	0	NA	intron (NM_014788, intron 2 of 5)	MER83C|LTR|ERV1	17213	NM_033219	9830	Hs.575631	NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
16.7778-4	chr8	22806972	22807471	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-21800	NM_144962	157310	Hs.491242	NM_144962	ENSG00000134020	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine binding protein 4	protein-coding
13.7161-2	chr2	10348292	10349233	+	0	NA	intron (NM_182626, intron 3 of 3)	intron (NM_182626, intron 3 of 3)	-15965	NR_036222	100422929		NR_036222	ENSG00000265418	MIR4261	-	microRNA 4261	ncRNA
34.4855-2	chr2	40435458	40435957	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	221737	NM_001252624	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
22.0135	chr18	55106005	55106504	+	0	NA	intron (NM_004852, intron 1 of 1)	CpG	3337	NM_004852	9480	Hs.194725	NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
13.9577	chr2	160644630	160645129	+	0	NA	intron (NM_001198760, intron 33 of 37)	Tigger3a|DNA|TcMar-Tigger	9887	NM_014880	9936	Hs.130014	NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
15.817-2	chr1	236678588	236679087	+	0	NA	Intergenic	Zaphod2|DNA|hAT-Tip100	-2677	NM_201545	3964	Hs.4082	NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
16.8825	chr17	60801052	60801551	+	0	NA	intron (NM_001288780, intron 8 of 10)	intron (NM_001288780, intron 8 of 10)	82713	NM_001100875	162333	Hs.665663	NM_152598	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane associated ring-CH-type finger 10	protein-coding
23.1336	chr19	5961916	5962415	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	16155	NM_007320	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
41.6622-2	chr8	111342038	111342537	+	0	NA	Intergenic	Intergenic	-354211	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium voltage-gated channel modifier subfamily V member 1	protein-coding
17.0774	chr6	710823	711322	+	0	NA	Intergenic	CpG	-17931	NR_073064	55770	Hs.484412	NM_018303	ENSG00000112685	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
17.3049-3	chr14	68987510	68988009	+	0	NA	intron (NM_001321818, intron 10 of 10)	L2b|LINE|L2	107745	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
26.5365	chr1	144987057	144987556	+	0	NA	intron (NM_001002810, intron 1 of 3)	L1MB3|LINE|L1	7727	NM_001002810	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
34.2713	chr2	166049729	166050228	+	0	NA	intron (NM_001081677, intron 1 of 27)	intron (NM_001081677, intron 1 of 27)	10599	NM_001081676	6328	Hs.435274	NM_006922	ENSG00000153253	SCN3A	NAC3|Nav1.3	sodium voltage-gated channel alpha subunit 3	protein-coding
13.4969-2	chr9	74397970	74398469	+	0	NA	Intergenic	Intergenic	-14419	NM_001135820	23670	Hs.494146	NM_013390	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
15.9688	chr10	105836522	105837021	+	0	NA	intron (NM_000494, intron 4 of 55)	intron (NM_000494, intron 4 of 55)	8867	NM_000494	1308	Hs.117938	NM_000494	ENSG00000065618	COL17A1	BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1	collagen type XVII alpha 1 chain	protein-coding
31.798-2	chr4	154369136	154369734	+	0	NA	Intergenic	Intergenic	-18063	NM_001131007	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
13.9686-5	chr1	151103654	151104153	+	0	NA	TTS (NM_001178062)	TTS (NM_001178062)	15237	NM_001178061	10500	Hs.516316	NM_030913	ENSG00000143434	SEMA6C	SEMAY|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
16.925-2	chr7	2237728	2238227	+	0	NA	intron (NM_001013836, intron 10 of 18)	intron (NM_001013836, intron 10 of 18)	34606	NM_003550	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
19.431	chr4	77671382	77671881	+	0	NA	intron (NM_020859, intron 6 of 10)	L1PA15|LINE|L1	147371	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
19.6257	chr2	85285363	85285862	+	0	NA	3' UTR (NM_020122, exon 7 of 7)	3' UTR (NM_020122, exon 7 of 7)	-74971	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
44.51-2	chr18	18747902	18748401	+	0	NA	Intergenic	Intergenic	-56339	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
13.4199-2	chr12	98576562	98577061	+	0	NA	Intergenic	Intergenic	-187585	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA
23.851	chr8	41685813	41686312	+	0	NA	intron (NM_001142446, intron 1 of 42)	CpG	-30922	NM_020475	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
22.1325	chr4	27715658	27716157	+	0	NA	Intergenic	L1MB3|LINE|L1	496806	NR_125921	101929199	Hs.570815	NR_125921	ENSG00000249699	LOC101929199	-	uncharacterized LOC101929199	ncRNA
13.5952	chr6	3796546	3797045	+	0	NA	Intergenic	Intergenic	-44549	NM_183373	221749	Hs.484500	NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
13.6452-3	chr11	20784833	20785332	+	0	NA	intron (NM_201551, intron 2 of 18)	MIRb|SINE|MIR	93985	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
18.3863-2	chr9	126440235	126440734	+	0	NA	intron (NM_024820, intron 5 of 20)	L2a|LINE|L2	-192583	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
15.1428	chr7	158359689	158360188	+	0	NA	intron (NM_130843, intron 1 of 21)	intron (NM_130843, intron 1 of 21)	20556	NM_002847	5799	Hs.490789	NM_002847	ENSG00000155093	PTPRN2	IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2	protein tyrosine phosphatase, receptor type N2	protein-coding
15.3018	chrUn_gl000214	125692	126191	+	0	NA	NA	Intergenic	NA	NA								
13.6351	chr9	74977529	74978028	+	0	NA	intron (NM_001102421, intron 1 of 5)	intron (NM_001102421, intron 1 of 5)	1730	NM_001278245	7763	Hs.406096	NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
15.7025	chr13	104446049	104446548	+	0	NA	Intergenic	Intergenic	368748	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
17.0115-3	chr1	181483457	181483956	+	0	NA	intron (NM_001205294, intron 3 of 45)	intron (NM_001205294, intron 3 of 45)	31020	NM_000721	777	Hs.437444	NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
15.7025-3	chr4	169423965	169424464	+	0	NA	intron (NM_016081, intron 1 of 20)	intron (NM_016081, intron 1 of 20)	5997	NM_001166108	23022	Hs.151220	NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
23.7059	chr1	40782137	40782636	+	0	NA	intron (NM_001852, intron 1 of 31)	CpG	553	NM_001852	1298	Hs.418012	NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
16.038	chr3	183059310	183059809	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	86498	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
22.815	chr18	72160804	72161303	+	0	NA	Intergenic	Intergenic	-2447	NM_018235	55748	Hs.149185	NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding
17.2584	chr1	30457024	30457523	+	0	NA	Intergenic	Intergenic	53186	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
15.6864-2	chr15	66232644	66233143	+	0	NA	intron (NM_032445, intron 10 of 22)	intron (NM_032445, intron 10 of 22)	71096	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
21.0624-2	chr18	33708856	33709355	+	0	NA	promoter-TSS (NM_001242875)	promoter-TSS (NM_001242875)	252	NM_012319	25800	Hs.79136	NM_012319	ENSG00000141424	SLC39A6	LIV-1|ZIP6	solute carrier family 39 member 6	protein-coding
14.8945-3	chr1	40221531	40222355	+	0	NA	TTS (NM_001720)	TTS (NM_001720)	15077	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
13.279-3	chr7	25817535	25818034	+	0	NA	Intergenic	Intergenic	171822	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
13.3255-5	chr1	155945274	155945773	+	0	NA	intron (NM_001162384, intron 1 of 21)	intron (NM_001162384, intron 1 of 21)	2443	NM_004723	9181	Hs.743352	NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
13.2883	chr8	42010438	42010937	+	0	NA	intron (NM_006803, intron 1 of 8)	CpG	223	NM_001134296	10947	Hs.654529	NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 mu 2 subunit	protein-coding
14.1341-2	chr14	77525798	77526297	+	0	NA	non-coding (NR_110554, exon 2 of 4)	non-coding (NR_110554, exon 2 of 4)	16487	NR_110553	102724190	Hs.562528	NR_110553	ENSG00000258819	LOC102724190	-	uncharacterized LOC102724190	ncRNA
16.0033-5	chrX	7208459	7209396	+	0	NA	intron (NM_001320754, intron 6 of 9)	intron (NM_001320754, intron 6 of 9)	38413	NM_001320754	412	Hs.522578	NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase (microsomal), isozyme S	protein-coding