PeakID (cmd=annotatePeaks.pl DBA_MYCDB_diffbind_reportLvC_contrast.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
13.9362-2	chr16	54536886	54537385	+	0	NA	Intergenic	Intergenic	-132524	NR_134923	100996345	Hs.112680	NR_134922	ENSG00000261803	LINC02140	-	long intergenic non-protein coding RNA 2140	ncRNA
15.817-4	chrX	49123005	49123504	+	0	NA	Intergenic	Intergenic	-1966	NM_001114377	50943	Hs.247700	NM_014009	ENSG00000049768	FOXP3	AIID|DIETER|IPEX|JM2|PIDX|XPID	forkhead box P3	protein-coding
14.3063	chr8	123772348	123772847	+	0	NA	Intergenic	Intergenic	-21304	NM_014943	22882	Hs.377090	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
16.6154-2	chr21	45440564	45441063	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	8607	NM_003274	7109	Hs.126221	NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
19.0309-5	chr14	50810093	50810592	+	0	NA	intron (NM_004196, intron 3 of 8)	intron (NM_004196, intron 3 of 8)	31295	NM_001003803	27109	Hs.438489	NM_015684	ENSG00000125375	ATP5S	ATPW|FB|HSU79253	ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B)	protein-coding
13.6856-2	chr15	52549679	52550178	+	0	NA	intron (NM_018728, intron 10 of 40)	MIR|SINE|MIR	19469	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
15.1856-2	chr2	178505975	178506474	+	0	NA	intron (NM_001077358, intron 18 of 18)	intron (NM_001077358, intron 18 of 18)	-22530	NM_152275	92104	Hs.128384	NM_152275	ENSG00000197557	TTC30A	IFT70A	tetratricopeptide repeat domain 30A	protein-coding
30.6148	chr7	35395431	35395930	+	0	NA	intron (NR_038864, intron 2 of 2)	intron (NR_038864, intron 2 of 2)	42214	NR_038864	401324	Hs.377034	NR_038864		LOC401324	-	uncharacterized LOC401324	ncRNA
14.7237-4	chr5	10583863	10584362	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	19677	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
21.0182	chr17	43367463	43367962	+	0	NA	intron (NM_003954, intron 2 of 15)	intron (NM_003954, intron 2 of 15)	26718	NM_003954	9020	Hs.404183	NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
15.1145-2	chr12	9753011	9753510	+	0	NA	intron (NM_002258, intron 2 of 5)	LTR5_Hs|LTR|ERVK	7237	NM_002258	3820	Hs.169824	NM_002258	ENSG00000111796	KLRB1	CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A	killer cell lectin like receptor B1	protein-coding
14.0561	chr3	8597275	8597774	+	0	NA	intron (NM_001278234, intron 3 of 4)	MER58A|DNA|hAT-Charlie	-15944	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312	long intergenic non-protein coding RNA 312	ncRNA
13.4969	chr21	17376105	17376604	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-66454	NR_136541	388815	Hs.473394	NR_027790		MIR99AHG	C21orf34|C21orf35|LINC00478|MONC	mir-99a-let-7c cluster host gene	ncRNA
16.1979-4	chr11	12540420	12540919	+	0	NA	intron (NM_018222, intron 12 of 12)	intron (NM_018222, intron 12 of 12)	141643	NM_018222	55742	Hs.432914	NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
23.3536	chr21	10552813	10553312	+	0	NA	Intergenic	L1PA13|LINE|L1	437881	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
18.8273-2	chr4	127279129	127279628	+	0	NA	Intergenic	LFSINE_Vert|SINE|SINE	850964	NR_031746	100302267		NR_031746	ENSG00000283550	MIR2054	hsa-mir-2054	microRNA 2054	ncRNA
31.798	chr8	137706808	137707307	+	0	NA	Intergenic	LTR1|LTR|ERV1	718774	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
14.2829-7	chr13	25299297	25299796	+	0	NA	Intergenic	Intergenic	-38755	NM_031277	56163	Hs.97464	NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
15.9517	chr19	38121351	38121850	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	24713	NM_001320667	22835	Hs.716719	NM_014898	ENSG00000120784	ZFP30	ZNF745	ZFP30 zinc finger protein	protein-coding
21.6241	chr2	23904195	23904694	+	0	NA	intron (NM_052920, intron 5 of 13)	intron (NM_052920, intron 5 of 13)	245540	NM_017552	54454	Hs.467862	NM_017552	ENSG00000119778	ATAD2B	-	ATPase family, AAA domain containing 2B	protein-coding
19.0309-3	chr6	15871434	15871933	+	0	NA	Intergenic	Intergenic	-208394	NR_036448	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
16.3451-3	chr4	179214679	179215178	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-385838	NR_108093	101928656	Hs.508131	NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
20.7831	chr8	81108857	81109762	+	0	NA	Intergenic	Intergenic	-25415	NM_001025253	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
14.2829-5	chrX	11161175	11161674	+	0	NA	TTS (NM_006125)	TTS (NM_006125)	32018	NM_001171991	3052	Hs.211571	NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
13.83	chr6	148262135	148262634	+	0	NA	Intergenic	Intergenic	-331028	NM_001346505	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
27.3755-3	chr11	95074405	95074904	+	0	NA	Intergenic	Intergenic	-108949	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
25.9688	chr7	137630695	137631194	+	0	NA	intron (NM_194071, intron 1 of 11)	MLT1E1|LTR|ERVL-MaLR	-7150	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
15.1428-2	chr1	167774863	167775362	+	0	NA	Intergenic	SVA_A|Other|Other	83925	NM_024569	9019	Hs.493919	NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
13.3724	chr7	37110067	37110566	+	0	NA	intron (NM_001206482, intron 15 of 21)	intron (NM_001206482, intron 15 of 21)	72915	NR_104120	100861514	Hs.627775	NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
20.9745	chr6	19587695	19588194	+	0	NA	Intergenic	Intergenic	137892	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
15.1286	chr4	185020448	185020947	+	0	NA	intron (NM_153343, intron 6 of 7)	intron (NM_153343, intron 6 of 7)	118417	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
25.7512	chr2	85316900	85317399	+	0	NA	Intergenic	Intergenic	-43434	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
16.5561	chr22	19839577	19840076	+	0	NA	5' UTR (NM_024627, exon 3 of 3)	5' UTR (NM_024627, exon 3 of 3)	2545	NM_024627	79680	Hs.105642	NM_024627	ENSG00000215012	C22orf29	BOP	chromosome 22 open reading frame 29	protein-coding
26.5365-2	chr6	137150339	137150838	+	0	NA	intron (NM_000288, intron 3 of 9)	MLT1A0|LTR|ERVL-MaLR	6886	NM_000288	5191	Hs.280932	NM_000288	ENSG00000112357	PEX7	PBD9B|PTS2R|RCDP1|RD	peroxisomal biogenesis factor 7	protein-coding
32.0343	chr14	62396632	62397131	+	0	NA	Intergenic	Intergenic	-65660	NM_031914	83851	Hs.404139	NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r|yt14r	synaptotagmin 16	protein-coding
21.6749	chr1	211722639	211723138	+	0	NA	Intergenic	Intergenic	29211	NM_021194	7779	Hs.519469	NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
13.3913	chr1	237398315	237398814	+	0	NA	intron (NM_001035, intron 1 of 104)	intron (NM_001035, intron 1 of 104)	192862	NM_001035	6262	Hs.109514	NM_001035	ENSG00000198626	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2	protein-coding
13.4104	chr6	19857844	19858343	+	0	NA	Intergenic	Intergenic	20492	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding
22.8483	chr17	70948746	70949245	+	0	NA	intron (NM_001159770, intron 4 of 9)	intron (NM_001159770, intron 4 of 9)	139858	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding
15.1428-6	chr4	37616923	37617422	+	0	NA	intron (NM_001085400, intron 6 of 6)	intron (NM_001085400, intron 6 of 6)	31317	NM_018302	55286	Hs.107527	NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
13.1695-2	chr5	11918692	11919191	+	0	NA	Intergenic	Intergenic	-14786	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
17.4958-9	chr2	195231948	195232447	+	0	NA	intron (NR_110222, intron 1 of 5)	LTR14B|LTR|ERVK	23204	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
19.1009-7	chr5	66106800	66107299	+	0	NA	intron (NM_198828, intron 3 of 5)	intron (NM_198828, intron 3 of 5)	-17555	NM_015183	375449	Hs.595458	NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
13.8091-8	chr11	47119369	47119868	+	0	NA	intron (NM_001003678, intron 3 of 8)	SVA_F|Other|Other	79058	NM_001242832	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
15.8004-3	chr5	145895492	145895991	+	0	NA	promoter-TSS (NM_194251)	promoter-TSS (NM_194251)	-65	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
33.1966	chr13	37459956	37460455	+	0	NA	intron (NM_005905, intron 1 of 5)	MIR|SINE|MIR	34204	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
15.7187-2	chr11	92484648	92485147	+	0	NA	intron (NM_001008781, intron 3 of 24)	L3|LINE|CR1	163897	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
13.4969-3	chrX	9856196	9856695	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-23967	NM_001320664	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
14.1794-3	chr14	75401319	75401818	+	0	NA	Intergenic	Intergenic	-12423	NM_031464	83694	Hs.414481	NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
13.2057-2	chr1	23034442	23034941	+	0	NA	Intergenic	L2b|LINE|L2	-2640	NM_001309193	2048	Hs.380705	NM_004442	ENSG00000133216	EPHB2	CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
13.2057	chrX	68831067	68831566	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-4595	NM_001399	1896	Hs.105407	NM_001399	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED	ectodysplasin A	protein-coding
14.3771	chr1	15562656	15563155	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10863	NM_052929	114827	Hs.659997	NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
16.925-2	chr17	27476340	27476839	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-9192	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
21.3966	chr15	78973884	78974383	+	0	NA	Intergenic	Intergenic	-40546	NM_000750	1143	Hs.624178	NM_000750	ENSG00000117971	CHRNB4	-	cholinergic receptor nicotinic beta 4 subunit	protein-coding
19.1009-8	chr2	138837449	138837948	+	0	NA	Intergenic	MER21B|LTR|ERVL	-21756	NR_135526	105373635		NR_135526	ENSG00000224231	LINC01832	-	long intergenic non-protein coding RNA 1832	ncRNA
14.034	chr1	9920884	9921383	+	0	NA	intron (NM_001012329, intron 4 of 4)	intron (NM_001012329, intron 4 of 4)	-36549	NM_001009566	22883	Hs.29665	NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
18.2102-4	chr4	44449351	44449850	+	0	NA	exon (NM_198353, exon 1 of 2)	exon (NM_198353, exon 1 of 2)	1224	NM_198353	386617	Hs.479644	NM_198353	ENSG00000183783	KCTD8	-	potassium channel tetramerization domain containing 8	protein-coding
13.7572-2	chr18	33957563	33958062	+	0	NA	intron (NM_025135, intron 3 of 24)	intron (NM_025135, intron 3 of 24)	80153	NM_025135	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
15.986	chr4	165826993	165827492	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	29102	NM_001297550	100506013	Hs.105196	NM_001297550	ENSG00000248329	APELA	ELA|Ende|tdl	apelin receptor early endogenous ligand	protein-coding
16.4589-3	chr16	66133105	66133604	+	0	NA	Intergenic	Intergenic	-267156	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
13.6856	chr12	31333114	31333613	+	0	NA	Intergenic	SVA_D|Other|Other	-106582	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	CONCR	DDX11 antisense RNA 1	ncRNA
18.2681-2	chr2	55126647	55127278	+	0	NA	intron (NM_001039753, intron 21 of 40)	intron (NM_001039753, intron 21 of 40)	110508	NM_007008	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
16.3827-3	chr2	42173057	42173556	+	0	NA	intron (NM_001242815, intron 3 of 3)	L2c|LINE|L2	7637	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
14.7237-3	chr5	170178575	170179074	+	0	NA	Intergenic	Intergenic	-31899	NM_014211	2568	Hs.26225	NM_014211	ENSG00000094755	GABRP	-	gamma-aminobutyric acid type A receptor pi subunit	protein-coding
13.1069	chr12	32417861	32418360	+	0	NA	intron (NM_001003398, intron 2 of 8)	L1MEc|LINE|L1	157925	NM_001714	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
45.4821	chr13	77386257	77386756	+	0	NA	Intergenic	Intergenic	74034	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
21.549-3	chr6	126207903	126208402	+	0	NA	intron (NM_001122842, intron 8 of 15)	intron (NM_001122842, intron 8 of 15)	-32218	NM_001199622	135112	Hs.171426	NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
14.6852	chr1	186083806	186084305	+	0	NA	exon (NM_031935, exon 74 of 107)	exon (NM_031935, exon 74 of 107)	-181350	NM_001127709	10216	Hs.647723	NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
24.6852-3	chr1	237145565	237146064	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	21904	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
14.318	chr16	79100329	79100828	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	534044	NM_005360	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
19.2812-5	chrX	147636490	147636989	+	0	NA	intron (NM_001169125, intron 1 of 19)	intron (NM_001169125, intron 1 of 19)	54600	NM_001169122	2334	Hs.496911	NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	AF4/FMR2 family member 2	protein-coding
15.0031	chr3	172600943	172601442	+	0	NA	Intergenic	Intergenic	132717	NM_001258316	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
13.4486	chr1	162209134	162209633	+	0	NA	intron (NM_014697, intron 2 of 9)	L2c|LINE|L2	82486	NR_039798	100616386		NR_039798	ENSG00000266144	MIR4654	mir-4654	microRNA 4654	ncRNA
16.6354-3	chr10	133774994	133775493	+	0	NA	Intergenic	Intergenic	20274	NM_004052	664	Hs.144873	NM_004052	ENSG00000176171	BNIP3	NIP3	BCL2 interacting protein 3	protein-coding
22.4642-6	chr8	58191353	58191852	+	0	NA	promoter-TSS (NR_026772)	promoter-TSS (NR_026772)	-500	NR_026772	26138	Hs.159352	NM_015643	ENSG00000215117	LINC00588	C8orf71	long intergenic non-protein coding RNA 588	ncRNA
15.157-2	chr1	249124677	249125176	+	0	NA	Intergenic	SVA_B|Other|Other	4350	NR_036070	100422879		NR_036070	ENSG00000264500	MIR3124	mir-3124	microRNA 3124	ncRNA
15.9007-3	chr17	53034101	53034600	+	0	NA	intron (NR_135677, intron 4 of 4)	LTR72|LTR|ERV1	-11776	NM_178509	252983	Hs.35199	NM_178509	ENSG00000166263	STXBP4	Synip	syntaxin binding protein 4	protein-coding
15.0307-3	chr3	65520414	65520913	+	0	NA	intron (NM_015520, intron 2 of 24)	intron (NM_015520, intron 2 of 24)	-358828	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
14.1341	chr21	33709335	33709834	+	0	NA	intron (NM_014825, intron 27 of 38)	intron (NM_014825, intron 27 of 38)	40047	NR_002996	677846	Hs.712293	NR_002996	ENSG00000200792	SNORA80A	ACA67|SNORA80	small nucleolar RNA, H/ACA box 80A	snoRNA
18.041-4	chr3	16245135	16245634	+	0	NA	intron (NM_001319051, intron 3 of 9)	intron (NM_001319051, intron 3 of 9)	-12899	NM_001319052	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
18.2974	chr4	157173285	157174098	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-298643	NM_001334	1519	Hs.75262	NM_001334	ENSG00000256043	CTSO	CTSO1	cathepsin O	protein-coding
18.041	chr11	44010742	44011241	+	0	NA	Intergenic	Intergenic	46885	NM_001145033	387763	Hs.530443	NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
33.0803	chr14	51965110	51966050	+	0	NA	intron (NM_001042481, intron 1 of 14)	MIRb|SINE|MIR	9741	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
16.6959	chr1	117560192	117560691	+	0	NA	intron (NM_001256109, intron 5 of 9)	intron (NM_001256109, intron 5 of 9)	16069	NM_001256109	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
15.9517-2	chr11	106492173	106492672	+	0	NA	Intergenic	Intergenic	370288	NR_120551	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
13.6151-2	chr3	137054205	137054704	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	377747	NM_144717	53833	Hs.61232	NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
13.5754-4	chr20	46476571	46477070	+	0	NA	Intergenic	Intergenic	-61460	NM_198596	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
20.7676-2	chr2	192087136	192087635	+	0	NA	Intergenic	LTR86B1|LTR|ERVL	-22617	NM_001130158	4430	Hs.439620	NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
26.2342-3	chr6	46884793	46885292	+	0	NA	intron (NM_015234, intron 1 of 20)	intron (NM_015234, intron 1 of 20)	4672	NM_001098518	221395	Hs.362806	NM_015234	ENSG00000069122	ADGRF5	GPR116|KPG_001	adhesion G protein-coupled receptor F5	protein-coding
28.962	chr5	3428009	3428508	+	0	NA	intron (NR_033898, intron 2 of 4)	intron (NR_033898, intron 2 of 4)	75860	NR_104618	102467075	Hs.652949	NR_104618	ENSG00000250716	LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA
13.7572-5	chr14	30599925	30600424	+	0	NA	Intergenic	Intergenic	-203226	NM_001330069	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
19.1364-2	chr3	13577409	13577908	+	0	NA	Intergenic	Intergenic	-12967	NM_001998	2199	Hs.198862	NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
13.4199	chr8	135618067	135618566	+	0	NA	intron (NM_001029939, intron 6 of 16)	L2c|LINE|L2	8002	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
16.9465-2	chr15	31764246	31764745	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	145437	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding
20.942-2	chr20	1814884	1815383	+	0	NA	Intergenic	MIRb|SINE|MIR	-54741	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
17.5945-2	chr5	60662257	60662756	+	0	NA	intron (NM_020928, intron 1 of 13)	AluJb|SINE|Alu	34406	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	AFND	zinc finger SWIM-type containing 6	protein-coding
14.1005-3	chrX	11170205	11170704	+	0	NA	intron (NR_109776, intron 11 of 14)	intron (NR_109776, intron 11 of 14)	41048	NM_001171991	3052	Hs.211571	NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
13.4104-2	chr15	78197454	78197953	+	0	NA	Intergenic	Intergenic	21485	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family member A pseudogene	pseudo
22.1968-2	chr14	93566926	93567425	+	0	NA	intron (NM_001142593, intron 2 of 10)	intron (NM_001142593, intron 2 of 10)	15089	NM_014216	3705	Hs.308122	NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
19.7062-10	chr2	165766590	165767442	+	0	NA	intron (NM_001199148, intron 9 of 10)	intron (NM_001199148, intron 9 of 10)	45019	NM_173512	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
19.5861	chr3	124036865	124037364	+	0	NA	intron (NM_001024660, intron 6 of 59)	intron (NM_001024660, intron 6 of 59)	-56065	NR_106731	102464832		NR_106731	ENSG00000276656	MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
14.7237-2	chr3	160549130	160549629	+	0	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	-10622	NM_001317911	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
17.6447	chr7	65457	65956	+	0	NA	Intergenic	Intergenic	83732	NR_134325	102723672	Hs.605204	NR_134325		LOC102723672	-	uncharacterized LOC102723672	ncRNA
29.9568-2	chr9	12737832	12738822	+	0	NA	intron (NR_125775, intron 3 of 3)	intron (NR_125775, intron 3 of 3)	-36685	NM_203403	286343	Hs.445356	NM_203403	ENSG00000153714	LURAP1L	C9orf150|HYST0841|LRAP35b|bA3L8.2	leucine rich adaptor protein 1 like	protein-coding
26.5365-6	chr1	165254604	165255103	+	0	NA	intron (NM_177398, intron 3 of 8)	Plat_L3|LINE|CR1	70625	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
16.7572	chr2	42317486	42317985	+	0	NA	Intergenic	Intergenic	42574	NM_138370	91461	Hs.408542	NM_138370	ENSG00000162878	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
13.9903-2	chr20	30709000	30709499	+	0	NA	intron (NM_014742, intron 1 of 17)	SVA_D|Other|Other	11940	NM_014742	9777	Hs.654665	NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
16.3451-8	chr3	16883272	16883771	+	0	NA	Intergenic	Intergenic	-42931	NM_001144382	23228	Hs.202010	NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
13.6957-2	chr6	108027741	108028240	+	0	NA	intron (NM_198081, intron 7 of 7)	MLT1D|LTR|ERVL-MaLR	25610	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
16.925	chr11	35182375	35182874	+	0	NA	intron (NM_001202556, intron 1 of 7)	intron (NM_001202556, intron 1 of 7)	22207	NM_001202556	960	Hs.502328	NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
14.8017-7	chr2	80679307	80679806	+	0	NA	intron (NM_001282597, intron 9 of 18)	intron (NM_001282597, intron 9 of 18)	139052	NM_001282599	1496	Hs.167368	NM_004389	ENSG00000066032	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin alpha 2	protein-coding
17.0115-4	chr17	18893634	18894133	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	14177	NM_001039999	644815	Hs.710727	NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
14.318-2	chr20	20450183	20450682	+	0	NA	intron (NM_020343, intron 37 of 39)	intron (NM_020343, intron 37 of 39)	101667	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
17.2125-8	chr3	83927037	83927536	+	0	NA	Intergenic	Intergenic	991440	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
15.6384	chr1	116767134	116767633	+	0	NA	Intergenic	Intergenic	113007	NM_152367	126868	Hs.376194	NM_152367	ENSG00000173212	MAB21L3	C1orf161	mab-21 like 3	protein-coding
22.3433	chr7	15085739	15086238	+	0	NA	Intergenic	Intergenic	-204913	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
13.8828-2	chr8	133192580	133193079	+	0	NA	intron (NM_001204824, intron 3 of 14)	intron (NM_001204824, intron 3 of 14)	-75317	NM_001145095	10086	Hs.285026	NM_005712	ENSG00000132297	HHLA1	PLA2L	HERV-H LTR-associating 1	protein-coding
22.0691	chr8	8360847	8361346	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-121752	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related kinase activating pseudokinase 1	protein-coding
13.3724-4	chr20	47219868	47220558	+	0	NA	Intergenic	Intergenic	224207	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
14.7366-3	chr5	18578579	18579078	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	771445	NR_134286	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA
13.439-3	chr1	197375241	197375740	+	0	NA	intron (NR_047564, intron 5 of 11)	SVA_D|Other|Other	138156	NM_201253	23418	Hs.126135	NM_012076	ENSG00000134376	CRB1	LCA8|RP12	crumbs 1, cell polarity complex component	protein-coding
14.6092	chr2	197924128	197924627	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-132922	NM_001321100	80055	Hs.229988	NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding
15.6225-6	chr3	32045619	32046118	+	0	NA	Intergenic	Intergenic	-22526	NM_017784	114884	Hs.150122	NM_017784	ENSG00000144645	OSBPL10	ORP10|OSBP9	oxysterol binding protein like 10	protein-coding
13.1158-2	chr12	131061715	131062214	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-59554	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
18.6328	chr16	10716208	10716707	+	0	NA	Intergenic	Intergenic	-41884	NM_001424	2013	Hs.531561	NM_001424	ENSG00000213853	EMP2	XMP	epithelial membrane protein 2	protein-coding
27.0553-2	chr3	112962679	112963178	+	0	NA	intron (NM_001301861, intron 2 of 19)	MLT1J1|LTR|ERVL-MaLR	31584	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
17.3518	chr2	159901482	159901981	+	0	NA	intron (NM_033394, intron 2 of 26)	AluSx|SINE|Alu	76585	NM_001145909	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
15.1428-4	chr11	31498995	31499494	+	0	NA	intron (NM_144981, intron 1 of 6)	intron (NM_144981, intron 1 of 6)	31931	NM_001304274	196294	Hs.502223	NM_144981	ENSG00000148950	IMMP1L	IMMP1|IMP1|IMP1-LIKE	inner mitochondrial membrane peptidase subunit 1	protein-coding
16.6354-9	chr12	3816171	3816670	+	0	NA	intron (NM_032680, intron 3 of 10)	L3b|LINE|CR1	45946	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
15.4821-2	chr10	58364724	58365223	+	0	NA	Intergenic	LTR1|LTR|ERV1	-243939	NM_001005413	11130	Hs.591363	NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
13.6251	chr14	66256860	66257359	+	0	NA	Intergenic	Intergenic	319289	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
17.4958-6	chr6	158332280	158332779	+	0	NA	intron (NM_016224, intron 9 of 17)	intron (NM_016224, intron 9 of 17)	-70359	NM_003898	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
27.0553	chr6	133992433	133992932	+	0	NA	intron (NR_109982, intron 4 of 8)	MSTA|LTR|ERVL-MaLR	-149603	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
20.9854-2	chr6	35502179	35502678	+	0	NA	Intergenic	L2|LINE|L2	-21713	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
15.5909-4	chr20	24682167	24682666	+	0	NA	Intergenic	Intergenic	231974	NM_001323607	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
14.908-2	chr10	79092003	79092502	+	0	NA	intron (NM_001322838, intron 1 of 29)	intron (NM_001322838, intron 1 of 29)	18267	NM_001322838	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
13.4775-2	chr16	46727740	46728239	+	0	NA	intron (NR_037620, intron 4 of 6)	SVA_F|Other|Other	4431	NM_014321	23594	Hs.49760	NM_014321	ENSG00000091651	ORC6	ORC6L	origin recognition complex subunit 6	protein-coding
13.8722	chr11	79002826	79003325	+	0	NA	intron (NM_001098816, intron 2 of 33)	intron (NM_001098816, intron 2 of 33)	110078	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
15.1856	chr12	26079396	26079895	+	0	NA	Intergenic	LTR79|LTR|ERVL	30873	NR_038227	100506451	Hs.560092	NR_038227		RASSF8-AS1	-	RASSF8 atnisense RNA 1	ncRNA
18.6967-3	chr1	77799093	77799592	+	0	NA	intron (NM_174858, intron 5 of 13)	MER58A|DNA|hAT-Charlie	51055	NM_012093	26289	Hs.559718	NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
14.698	chr8	21593410	21593909	+	0	NA	intron (NM_001495, intron 4 of 8)	intron (NM_001495, intron 4 of 8)	52687	NM_001165038	2675	Hs.441202	NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
18.6967	chr21	34506087	34506586	+	0	NA	Intergenic	Intergenic	-10330	NR_109961	101928107	Hs.382669	NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
15.0724-3	chr1	40274131	40274630	+	0	NA	Intergenic	SVA_B|Other|Other	19732	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
19.2812-2	chr11	43946626	43947125	+	0	NA	Intergenic	Intergenic	-4381	NR_038907	100507300	Hs.664588	NR_038907	ENSG00000244926	ALKBH3-AS1	-	ALKBH3 antisense RNA 1	ncRNA
16.8194	chr1	109798253	109798752	+	0	NA	intron (NM_001408, intron 1 of 33)	intron (NM_001408, intron 1 of 33)	5861	NM_001408	1952	Hs.57652	NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
23.5655-3	chr12	55411251	55411750	+	0	NA	Intergenic	Intergenic	-2229	NM_021191	58158	Hs.591024	NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
24.6471-2	chr2	15136435	15136934	+	0	NA	Intergenic	Intergenic	361469	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding
18.4164	chr9	1960311	1960810	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-54659	NM_001289397	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
15.1286-4	chr1	156687165	156687664	+	0	NA	Intergenic	MIR|SINE|MIR	10817	NM_001303095	81875	Hs.301904	NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
13.5754-3	chr2	140250721	140251220	+	0	NA	Intergenic	Intergenic	596076	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
14.1005-2	chr22	18934414	18934913	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10597	NM_016335	5625	Hs.517352	NM_016335	ENSG00000100033	PRODH	HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6	proline dehydrogenase 1	protein-coding
18.6012-2	chr2	74453837	74454336	+	0	NA	exon (NM_133478, exon 27 of 31)	exon (NM_133478, exon 27 of 31)	28396	NM_006636	10797	Hs.469030	NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
13.6151-3	chr7	47223676	47224175	+	0	NA	Intergenic	L1ME3D|LINE|L1	397817	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
21.9518	chr4	2887808	2888307	+	0	NA	intron (NM_001286645, intron 5 of 17)	intron (NM_001286645, intron 5 of 17)	42180	NM_001286645	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
14.9621-2	chr2	47456292	47456791	+	0	NA	intron (NR_110207, intron 1 of 2)	intron (NR_110207, intron 1 of 2)	-52466	NM_001305625	805	Hs.468442	NM_001743	ENSG00000143933	CALM2	CAMII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
16.5956	chr4	38809847	38810346	+	0	NA	Intergenic	SVA_D|Other|Other	-3684	NM_003263	7096	Hs.621817	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding
14.8017-5	chr11	473984	474483	+	0	NA	intron (NR_138046, intron 3 of 12)	intron (NR_138046, intron 3 of 12)	23953	NM_001329545	81490	Hs.12851	NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
13.2975	chr4	83631172	83631671	+	0	NA	intron (NM_024906, intron 1 of 3)	MIR3|SINE|MIR	43162	NR_030301	693160		NR_030301	ENSG00000207746	MIR575	MIRN575|hsa-mir-575	microRNA 575	ncRNA
20.8884-5	chr11	100630518	100631017	+	0	NA	intron (NM_152432, intron 1 of 23)	intron (NM_152432, intron 1 of 23)	-72081	NR_133571	100128386	Hs.635125	NR_133571	ENSG00000248027	LOC100128386	-	uncharacterized LOC100128386	ncRNA
14.7237-7	chr12	117771223	117771722	+	0	NA	intron (NM_001204218, intron 1 of 29)	intron (NM_001204218, intron 1 of 29)	-24257	NM_001204214	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
13.5164-4	chr18	6203723	6204222	+	0	NA	intron (NM_001330559, intron 12 of 18)	intron (NM_001330559, intron 12 of 18)	-52771	NR_110765	101927150		NR_110765		L3MBTL4-AS1	-	L3MBTL4 antisense RNA 1	ncRNA
13.0277	chr14	100754588	100755087	+	0	NA	Intergenic	Intergenic	11143	NR_106822	102466730		NR_106822	ENSG00000100811	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
15.986-9	chr2	16133297	16133796	+	0	NA	Intergenic	Intergenic	-51175	NM_001329968	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	protein-coding
14.7108-5	chr17	27439818	27440317	+	0	NA	intron (NM_001346768, intron 15 of 40)	intron (NM_001346768, intron 15 of 40)	27330	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding
18.9963-6	chr7	127353777	127354276	+	0	NA	intron (NM_014390, intron 9 of 23)	intron (NM_014390, intron 9 of 23)	61983	NM_014390	27044	Hs.122523	NM_014390	ENSG00000197157	SND1	TDRD11|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
15.9007	chr3	156130979	156131478	+	0	NA	intron (NM_172159, intron 1 of 13)	MIR|SINE|MIR	33497	NR_046618	100874084	Hs.131282	NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
18.6328-2	chr3	193782703	193783202	+	0	NA	intron (NR_136181, intron 1 of 3)	MER94B|DNA|hAT-Blackjack	4366	NR_136181	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
23.1247	chr2	174888155	174888654	+	0	NA	Intergenic	Intergenic	-1604	NR_136175	100128905	Hs.456944	NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
27.4958-2	chr9	103780694	103781193	+	0	NA	Intergenic	Intergenic	-10088	NM_207299	54886	Hs.382683	NM_017753	ENSG00000148123	PLPPR1	LPPR1|PRG-3	phospholipid phosphatase related 1	protein-coding
16.1261-2	chr13	80376830	80377329	+	0	NA	Intergenic	Intergenic	-1442	NR_125785	102724076	Hs.208617	NR_125785	ENSG00000229011	LINC01038	-	long intergenic non-protein coding RNA 1038	ncRNA
15.1713-2	chr14	38142604	38143103	+	0	NA	intron (NM_001310135, intron 3 of 32)	intron (NM_001310135, intron 3 of 32)	78449	NM_001310135	319089	Hs.659936	NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
15.8004-2	chr3	71592419	71592918	+	0	NA	promoter-TSS (NM_001244816)	promoter-TSS (NM_001244816)	40	NM_001244816	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
18.2102	chr2	179773472	179773971	+	0	NA	intron (NM_173648, intron 7 of 23)	intron (NM_173648, intron 7 of 23)	-101571	NM_133437	7273	Hs.134602	NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD	titin	protein-coding
13.83-4	chr13	79311575	79312074	+	0	NA	Intergenic	Intergenic	-78510	NM_024546	79596	Hs.567576	NM_024546	ENSG00000152193	RNF219	C13orf7	ring finger protein 219	protein-coding
14.7756-3	chr13	24027283	24027782	+	0	NA	Intergenic	Intergenic	-16119	NR_038995	100506697	Hs.50118	NR_038995	ENSG00000232977	LINC00327	NCRNA00327	long intergenic non-protein coding RNA 327	ncRNA
18.041-5	chr12	41078768	41079267	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7227	NM_001256063	1272	Hs.143434	NM_001843	ENSG00000018236	CNTN1	F3|GP135|MYPCN	contactin 1	protein-coding
13.3255	chr6	159191088	159191587	+	0	NA	intron (NM_001111077, intron 10 of 13)	intron (NM_001111077, intron 10 of 13)	-5552	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
28.4466	chr5	38424292	38424791	+	0	NA	intron (NM_152403, intron 12 of 21)	intron (NM_152403, intron 12 of 21)	20907	NM_182798	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
25.2724	chr3	192090382	192090881	+	0	NA	intron (NM_004113, intron 2 of 5)	L2a|LINE|L2	36207	NM_021032	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
13.4872	chr5	168527526	168528025	+	0	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	87543	NR_109897	728095	Hs.145601	NR_109897		LOC728095	-	uncharacterized LOC728095	ncRNA
14.5593-2	chr2	145113706	145114205	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-23854	NM_001284238	79712	Hs.44780	NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
30.6399	chr17	66874651	66875150	+	0	NA	intron (NM_001288985, intron 32 of 39)	intron (NM_001288985, intron 32 of 39)	76633	NM_007168	10351	Hs.58351	NM_007168	ENSG00000141338	ABCA8	-	ATP binding cassette subfamily A member 8	protein-coding
15.5129	chr1	201346512	201347331	+	0	NA	promoter-TSS (NM_000364)	promoter-TSS (NM_000364)	-93	NM_001276345	7139	Hs.533613	NM_000364	ENSG00000118194	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T2, cardiac type	protein-coding
14.6725-2	chrX	15931193	15931692	+	0	NA	Intergenic	Intergenic	-58305	NM_003916	8905	Hs.121592	NM_003916	ENSG00000182287	AP1S2	DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor related protein complex 1 sigma 2 subunit	protein-coding
16.0206-3	chr2	148617515	148618014	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	15200	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
13.439	chr11	76315168	76316028	+	0	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	65446	NM_005512	2615	Hs.151641	NM_005512	ENSG00000137507	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
16.1798-2	chr7	93704650	93705149	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-71205	NR_133909	10282	Hs.489132	NM_005868	ENSG00000105829	BET1	HBET1	Bet1 golgi vesicular membrane trafficking protein	protein-coding
21.2784-2	chr11	45533109	45533608	+	0	NA	Intergenic	Intergenic	140410	NR_122071	399886	Hs.559970	NR_122071	ENSG00000255267	LOC399886	-	uncharacterized LOC399886	ncRNA
15.157	chr20	46586637	46587136	+	0	NA	Intergenic	Intergenic	-25084	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
21.4874-2	chr8	93765401	93765900	+	0	NA	intron (NR_046114, intron 1 of 2)	intron (NR_046114, intron 1 of 2)	32638	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
16.7778-4	chr5	77652883	77653382	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-3195	NM_001290229	9522	Hs.482587	NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
16.0906	chr5	54179173	54179672	+	0	NA	Intergenic	CpG	101992	NM_007036	11082	Hs.129944	NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
21.3668	chr11	85517802	85518301	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	4151	NM_001289608	54843	Hs.369520	NM_032379	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
21.2784	chr3	193621697	193622196	+	0	NA	Intergenic	Intergenic	90081	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
14.0561-5	chr8	142741115	142741614	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	126310	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
14.8678-2	chr9	120992556	120993055	+	0	NA	Intergenic	Intergenic	526352	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
16.5758-4	chr11	100632383	100632882	+	0	NA	intron (NM_152432, intron 1 of 23)	MIRb|SINE|MIR	-73946	NR_133571	100128386	Hs.635125	NR_133571	ENSG00000248027	LOC100128386	-	uncharacterized LOC100128386	ncRNA
16.0033	chr4	75658952	75659451	+	0	NA	Intergenic	LTR33B|LTR|ERVL	60695	NM_001316963	685	Hs.591704	NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
14.6471	chr12	110400213	110400712	+	0	NA	intron (NM_001135213, intron 10 of 18)	intron (NM_001135213, intron 10 of 18)	33732	NM_139201	9815	Hs.434996	NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
14.4855-2	chr5	32209239	32209738	+	0	NA	Intergenic	SVA_F|Other|Other	-35063	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
16.6555	chr11	126926168	126926667	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-10480	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
16.6354-7	chr7	92173717	92174216	+	0	NA	Intergenic	SVA_B|Other|Other	15879	NM_032120	84060	Hs.21590	NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304|MGC16142	RNA binding motif protein 48	protein-coding
13.2883-4	chrX	73631765	73632264	+	0	NA	Intergenic	SVA_C|Other|Other	-9314	NM_006517	6567	Hs.75317	NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
13.5262	chr5	32299384	32299883	+	0	NA	intron (NM_001040446, intron 1 of 15)	intron (NM_001040446, intron 1 of 15)	13481	NM_001294344	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
17.4715-3	chr8	133425897	133426396	+	0	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	33363	NM_001204824	3786	Hs.374023	NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
13.363-2	chr15	55630760	55631259	+	0	NA	intron (NM_004855, intron 6 of 11)	MLT1F2|LTR|ERVL-MaLR	-19617	NM_001308423	101928527	Hs.493512	NM_001308421	ENSG00000225973	PIGBOS1	HP06981	PIGB opposite strand 1	protein-coding
14.045	chr2	3005310	3005809	+	0	NA	intron (NR_110228, intron 3 of 6)	intron (NR_110228, intron 3 of 6)	124239	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
16.7778-2	chr2	29970838	29971337	+	0	NA	intron (NM_004304, intron 1 of 28)	intron (NM_004304, intron 1 of 28)	173390	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
25.8838	chr1	86969189	86969837	+	0	NA	Intergenic	Intergenic	34987	NM_001285	1179	Hs.194659	NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
20.1863	chr2	1597311	1597810	+	0	NA	Intergenic	Intergenic	150759	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
16.0555-4	chr7	36878216	36878715	+	0	NA	Intergenic	Intergenic	80572	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
27.1897	chr21	16930188	16930687	+	0	NA	Intergenic	LTR9|LTR|ERV1	-171907	NM_001283041	29761	Hs.743994	NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
16.8825-2	chr16	48565151	48565650	+	0	NA	intron (NR_039970, intron 2 of 4)	intron (NR_039970, intron 2 of 4)	78720	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
13.1876	chr1	236855299	236855798	+	0	NA	intron (NM_001278344, intron 1 of 22)	intron (NM_001278344, intron 1 of 22)	5794	NM_001103	88	Hs.498178	NM_001103	ENSG00000077522	ACTN2	CMD1AA|CMH23	actinin alpha 2	protein-coding
20.013	chr5	43643776	43644275	+	0	NA	intron (NM_001331026, intron 6 of 20)	Tigger12A|DNA|TcMar-Tigger	-40693	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
20.4239	chr13	102217598	102218097	+	0	NA	intron (NM_001271756, intron 1 of 9)	intron (NM_001271756, intron 1 of 9)	75544	NM_001271756	9358	Hs.696554	NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
16.6555-4	chr20	52113083	52113582	+	0	NA	Intergenic	L2a|LINE|L2	-55977	NR_110051	101927770		NR_110051		LOC101927770	-	uncharacterized LOC101927770	ncRNA
16.0033-2	chr2	32118629	32119128	+	0	NA	intron (NM_001137602, intron 4 of 7)	intron (NM_001137602, intron 4 of 7)	116855	NM_015955	51072	Hs.444969	NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
13.2514	chr1	208282220	208282719	+	0	NA	intron (NM_025179, intron 4 of 31)	intron (NM_025179, intron 4 of 31)	135196	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
13.83-2	chr1	115022610	115023109	+	0	NA	intron (NM_033020, intron 1 of 18)	SVA_C|Other|Other	30922	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
14.908	chr12	6995483	6995982	+	0	NA	TTS (NR_033796)	TTS (NR_033796)	1886	NR_033796	171220	Hs.661103	NR_033796	ENSG00000248593	DSTNP2	-	destrin, actin depolymerizing factor pseudogene 2	pseudo
16.1798-3	chr14	39974232	39974731	+	0	NA	Intergenic	L1M2c|LINE|L1	-72777	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
13.6452-2	chr3	97667859	97668358	+	0	NA	intron (NM_001042533, intron 7 of 9)	MSTB1|LTR|ERVL-MaLR	23187	NM_153182	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
18.5387	chr6	105389117	105389616	+	0	NA	promoter-TSS (NR_046407)	promoter-TSS (NR_046407)	-964	NR_046407	100113403	Hs.649249	NR_046407	ENSG00000203809	LIN28B-AS1	C6orf220|LINC00577|dJ439I14.1	LIN28B antisense RNA 1	ncRNA
15.4061	chr9	137725387	137725886	+	0	NA	intron (NM_001278074, intron 64 of 65)	intron (NM_001278074, intron 64 of 65)	15579	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
14.4977-3	chrX	5513382	5513881	+	0	NA	Intergenic	Intergenic	-630768	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
17.2125-10	chr10	112256411	112256910	+	0	NA	promoter-TSS (NM_004419)	promoter-TSS (NM_004419)	-965	NM_004419	1847	Hs.2128	NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
16.2709-3	chr3	58668540	58669039	+	0	NA	Intergenic	Intergenic	-16228	NM_138805	131177	Hs.61265	NM_138805	ENSG00000198643	FAM3D	EF7|OIT1	family with sequence similarity 3 member D	protein-coding
24.3297	chr5	32426747	32427567	+	0	NA	intron (NR_144318, intron 2 of 18)	L1M3|LINE|L1	17710	NM_016107	51663	Hs.435231	NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
34.4491	chr2	205887690	205888189	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	477423	NM_205863	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
19.3554	chr18	3916046	3916545	+	0	NA	intron (NM_004746, intron 3 of 12)	intron (NM_004746, intron 3 of 12)	30942	NR_106776	102465430		NR_106776	ENSG00000275518	MIR6718	hsa-mir-6718	microRNA 6718	ncRNA
16.4782-2	chr9	42206504	42207003	+	0	NA	Intergenic	L1PA13|LINE|L1	-161550	NM_001012421	441430	Hs.632663	NM_001012421	ENSG00000183148	ANKRD20A2	-	ankyrin repeat domain 20 family member A2	protein-coding
21.9044	chr21	9930153	9930652	+	0	NA	intron (NR_038329, intron 2 of 2)	L1P4|LINE|L1	38192	NR_038329	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
18.4771-2	chr14	44924779	44925278	+	0	NA	Intergenic	Intergenic	51471	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
14.389-3	chr5	108682850	108683349	+	0	NA	intron (NM_014819, intron 7 of 9)	LTR41|LTR|ERVL	62576	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
21.4569	chr3	111431057	111431556	+	0	NA	intron (NM_001185106, intron 2 of 4)	intron (NM_001185106, intron 2 of 4)	-20021	NM_001134437	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
40.6449-2	chr5	43580543	43581042	+	0	NA	intron (NR_073113, intron 2 of 2)	LTR5_Hs|LTR|ERVK	-21999	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
17.9317	chr1	245462078	245462577	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	144040	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
17.0997-2	chr3	186601937	186602436	+	0	NA	Intergenic	SVA_D|Other|Other	-28274	NR_046662	100874095	Hs.80485	NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
31.8177	chr8	128926432	128926931	+	0	NA	intron (NR_003367, intron 2 of 8)	L1MB5|LINE|L1	34288	NR_103558	641384	Hs.629674	NM_001037234	ENSG00000280055	TMEM75	-	transmembrane protein 75	ncRNA
20.8991	chrX	129215648	129216147	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	28578	NM_001421	2000	Hs.271940	NM_001421	ENSG00000102034	ELF4	ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
14.8017-6	chr8	128717115	128717614	+	0	NA	intron (NR_117102, intron 2 of 3)	AluJo|SINE|Alu	28849	NR_117102	100270680	Hs.333720	NR_117101	ENSG00000249375	CASC11	CARLo-7|LINC00990|TCONS_00014535	cancer susceptibility candidate 11 (non-protein coding)	ncRNA
13.2057-3	chr2	182050556	182051055	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	62241	NR_130784	101927156	Hs.580074	NR_130784	ENSG00000234663	LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
90.9098	chr2	13756676	13757175	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-609787	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
18.4771-3	chr1	157430054	157430553	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	92007	NM_031281	83416	Hs.415950	NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
18.3268-2	chr15	99289894	99290393	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-37512	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
21.3727	chr8	8086066	8086937	+	0	NA	intron (NR_024362, intron 1 of 7)	CpG-25383	409	NR_024362	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
23.7986	chr9	119996309	119996808	+	0	NA	intron (NM_014010, intron 2 of 21)	intron (NM_014010, intron 2 of 21)	-53078	NR_003708	100124538	Hs.693445	NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
23.1158-2	chr2	234583438	234583937	+	0	NA	intron (NM_021027, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	3143	NM_021027	54600	Hs.554822	NM_021027	ENSG00000241119	UGT1A9	HLUGP4|LUGP4|UDPGT|UDPGT 1-9|UGT-1I|UGT1-09|UGT1-9|UGT1.9|UGT1A9S|UGT1AI|UGT1I	UDP glucuronosyltransferase family 1 member A9	protein-coding
16.0206	chr3	15340451	15340950	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	33436	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
17.7728-2	chr2	1991098	1991597	+	0	NA	intron (NM_001329845, intron 5 of 24)	intron (NM_001329845, intron 5 of 24)	-243028	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
13.4775	chr16	18746099	18746598	+	0	NA	Intergenic	SVA_B|Other|Other	55308	NM_001030009	6210	Hs.370504	NM_001019	ENSG00000134419	RPS15A	S15a	ribosomal protein S15a	protein-coding
19.2812-8	chr16	49053059	49053558	+	0	NA	Intergenic	Intergenic	262434	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
15.7025-4	chr20	24699583	24700082	+	0	NA	Intergenic	Intergenic	-230034	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
23.5164	chr12	103728225	103728724	+	0	NA	intron (NM_001099336, intron 4 of 5)	intron (NM_001099336, intron 4 of 5)	161314	NR_103526	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
16.7366-3	chr1	112272059	112272558	+	0	NA	intron (NM_198926, intron 1 of 1)	intron (NM_198926, intron 1 of 1)	9738	NM_019099	55924	Hs.193406	NM_019099	ENSG00000197852	FAM212B	C1orf183	family with sequence similarity 212 member B	protein-coding
22.3284	chr2	26504033	26504532	+	0	NA	intron (NM_000183, intron 10 of 15)	intron (NM_000183, intron 10 of 15)	36666	NM_000183	3032	Hs.515848	NM_000183	ENSG00000138029	HADHB	ECHB|MSTP029|MTPB|TP-BETA	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit	protein-coding
13.5952-4	chrX	20080176	20080675	+	0	NA	intron (NM_152780, intron 3 of 15)	MIRb|SINE|MIR	-45120	NR_037414	100500809		NR_037414	ENSG00000264566	MIR23C	hsa-mir-23c|mir-23c	microRNA 23c	ncRNA
13.279	chr4	183579793	183580292	+	0	NA	intron (NM_001080477, intron 6 of 27)	MLT1G3|LTR|ERVL-MaLR	258588	NM_001012732	1635	Hs.183850	NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
17.9588	chrX	48330510	48331009	+	0	NA	Intergenic	Intergenic	-2115	NM_033518	92745	Hs.195155	NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
14.8945-4	chr4	117104208	117104707	+	0	NA	Intergenic	Intergenic	-116424	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA
23.439	chr7	81720459	81720958	+	0	NA	intron (NM_000722, intron 6 of 38)	intron (NM_000722, intron 6 of 38)	82215	NR_110076	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA
13.83-3	chr13	52187672	52188171	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	29437	NM_052950	115825	Hs.46506	NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
13.536	chr18	9099300	9099799	+	0	NA	Intergenic	LTR9|LTR|ERV1	-3079	NM_021074	4729	Hs.464572	NM_021074	ENSG00000178127	NDUFV2	CI-24k	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
13.9577-3	chr2	174075954	174076453	+	0	NA	intron (NR_033882, intron 5 of 7)	L2c|LINE|L2	70561	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MAP3K20-AS1	MLK7-AS1	MAP3K20 antisense RNA 1	ncRNA
15.0169-2	chr17	54191795	54192294	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-38792	NM_153228	162282	Hs.673040	NM_153228	ENSG00000153930	ANKFN1	-	ankyrin repeat and fibronectin type III domain containing 1	protein-coding
15.4212-2	chr1	22940345	22940844	+	0	NA	Intergenic	Intergenic	19265	NR_106742	102466615		NR_106742	ENSG00000276835	MIR6127	hsa-mir-6127	microRNA 6127	ncRNA
13.7882	chr9	136713567	136714066	+	0	NA	intron (NM_001134398, intron 3 of 29)	intron (NM_001134398, intron 3 of 29)	-108739	NM_007101	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
13.7263-2	chr3	13163567	13164066	+	0	NA	Intergenic	L2a|LINE|L2	-49199	NM_001134382	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
15.7025-5	chr3	24927839	24928338	+	0	NA	intron (NM_001290216, intron 2 of 10)	AluJb|SINE|Alu	57274	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
14.3297	chr11	35653750	35654249	+	0	NA	Intergenic	Intergenic	14264	NM_014344	24147	Hs.39384	NM_014344	ENSG00000179431	FJX1	-	four jointed box 1	protein-coding
38.6328	chr14	21072065	21072947	+	0	NA	intron (NR_122043, intron 4 of 4)	HERVL18-int|LTR|ERVL	-13524	NM_001024822	493901	Hs.729466	NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
19.7062-6	chr2	55381759	55382258	+	0	NA	Intergenic	Intergenic	-17041	NM_001321904	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
51.7653	chr7	131633102	131633601	+	0	NA	intron (NR_110836, intron 5 of 5)	intron (NR_110836, intron 5 of 5)	38372	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
20.8884-4	chr8	51298091	51298590	+	0	NA	intron (NM_001321778, intron 2 of 16)	ERVL-B4-int|LTR|ERVL	221649	NM_001321778	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
16.1798-6	chr8	41463239	41463738	+	0	NA	intron (NM_178819, intron 2 of 12)	intron (NM_178819, intron 2 of 12)	-27601	NR_125824	102723729	Hs.586384	NR_125824		LOC102723729	-	uncharacterized LOC102723729	ncRNA
33.9147-2	chr5	53965979	53966478	+	0	NA	intron (NR_104658, intron 1 of 2)	LTR88a|LTR|Gypsy?	32924	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
23.0277	chr14	99584336	99584835	+	0	NA	Intergenic	CpG	153465	NM_001282238	64919	Hs.709690	NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B	protein-coding
28.8273-3	chr9	7154122	7154621	+	0	NA	intron (NM_015061, intron 19 of 21)	intron (NM_015061, intron 19 of 21)	396730	NR_130707	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
18.9963-4	chr10	61889722	61890221	+	0	NA	intron (NM_001204404, intron 26 of 43)	intron (NM_001204404, intron 26 of 43)	10803	NM_001149	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
23.5655-4	chr21	34524615	34525114	+	0	NA	Intergenic	Intergenic	17677	NR_024102	728409	Hs.125234	NR_024102	ENSG00000229086	LINC01548	C21orf54	long intergenic non-protein coding RNA 1548	ncRNA
14.7756-2	chr12	30085381	30085880	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-147938	NM_175861	83857	Hs.401954	NM_175861	ENSG00000133687	TMTC1	ARG99|OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
13.363	chr12	108784594	108785093	+	0	NA	Intergenic	Intergenic	-51749	NM_004072	1240	Hs.197143	NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemerin chemokine-like receptor 1	protein-coding
13.6452-3	chr6	33493493	33493992	+	0	NA	Intergenic	SVA_F|Other|Other	54328	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
16.0555	chr17	4978329	4978828	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-3176	NM_153018	124961	Hs.48832	NM_153018	ENSG00000180787	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
16.1798	chr3	189712840	189713339	+	0	NA	exon (NM_018192, exon 2 of 15)	exon (NM_018192, exon 2 of 15)	-125664	NR_126419	101929152		NR_126419	ENSG00000225764	P3H2-AS1	LEPREL1-AS1	P3H2 antisense RNA 1	ncRNA
15.6225-3	chrX	68096533	68097032	+	0	NA	Intergenic	Intergenic	47942	NM_004429	1947	Hs.144700	NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
17.9317-2	chr3	82273753	82274252	+	0	NA	Intergenic	L1PA16|LINE|L1	-463052	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding
17.167	chr3	118400301	118400800	+	0	NA	intron (NR_135547, intron 1 of 3)	LTR9|LTR|ERV1	39935	NR_135573	101926968	Hs.518185	NR_135573		LOC101926968	-	uncharacterized LOC101926968	ncRNA
25.1999	chr20	53241539	53242038	+	0	NA	intron (NM_177959, intron 6 of 7)	intron (NM_177959, intron 6 of 7)	149531	NM_177959	55816	Hs.473133	NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
14.51	chr12	57583739	57584238	+	0	NA	intron (NM_002332, intron 42 of 88)	intron (NM_002332, intron 42 of 88)	-4299	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
24.8545	chr1	53715100	53715599	+	0	NA	intron (NM_033300, intron 15 of 16)	L2c|LINE|L2	11067	NR_038953	100507564	Hs.592502	NR_038953	ENSG00000226754	LOC100507564	-	uncharacterized LOC100507564	ncRNA
19.8716-2	chr1	55515832	55516331	+	0	NA	intron (NM_174936, intron 3 of 11)	intron (NM_174936, intron 3 of 11)	10186	NR_110451	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
15.7025-2	chr17	3783167	3783666	+	0	NA	intron (NM_172206, intron 9 of 15)	intron (NM_172206, intron 9 of 15)	10621	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
14.0561-3	chr2	175399740	175400239	+	0	NA	Intergenic	Intergenic	22811	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
14.0121-4	chr11	117205460	117205959	+	0	NA	intron (NM_014956, intron 1 of 32)	intron (NM_014956, intron 1 of 32)	7138	NM_014956	22897	Hs.504009	NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
17.0553-3	chr10	111522021	111522520	+	0	NA	Intergenic	L1M1|LINE|L1	160734	NM_001324136	7511	Hs.390623	NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
14.5223	chr5	149840732	149841231	+	0	NA	Intergenic	Intergenic	-11662	NM_001025071	6208	Hs.744846	NM_005617	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
34.8545	chr3	177288026	177288525	+	0	NA	intron (NR_047568, intron 2 of 3)	L2c|LINE|L2	128566	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
17.7989-2	chr8	67052888	67053387	+	0	NA	intron (NM_184087, intron 4 of 4)	intron (NM_184087, intron 4 of 4)	13859	NM_184086	84675	Hs.85524	NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
16.7778	chr11	31658478	31658977	+	0	NA	intron (NM_001288725, intron 7 of 10)	intron (NM_001288725, intron 7 of 10)	127451	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4	elongator acetyltransferase complex subunit 4	protein-coding
13.8091-3	chr6	159859113	159859612	+	0	NA	Intergenic	Intergenic	54799	NR_125873	102724053	Hs.98463	NR_125873	ENSG00000234777	LOC102724053	-	uncharacterized LOC102724053	ncRNA
17.4958-10	chr1	53948432	53948931	+	0	NA	Intergenic	Intergenic	23609	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
13.0452-2	chr3	186610992	186611491	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-37074	NM_173216	6480	Hs.207459	NM_003032	ENSG00000073849	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
13.3255-5	chr17	40463486	40463985	+	0	NA	3' UTR (NM_003152, exon 20 of 20)	3' UTR (NM_003152, exon 20 of 20)	23661	NM_001288719	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
15.6225-5	chr17	54237132	54237631	+	0	NA	intron (NM_153228, intron 1 of 16)	intron (NM_153228, intron 1 of 16)	6545	NM_153228	162282	Hs.673040	NM_153228	ENSG00000153930	ANKFN1	-	ankyrin repeat and fibronectin type III domain containing 1	protein-coding
14.389-2	chr6	158078554	158079053	+	0	NA	intron (NM_153746, intron 8 of 8)	intron (NM_153746, intron 8 of 8)	128639	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
19.7062-9	chr1	162946298	162946797	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-91849	NM_001102445	5999	Hs.386726	NM_005613	ENSG00000117152	RGS4	RGP4|SCZD9	regulator of G-protein signaling 4	protein-coding
19.1009-6	chr1	180163860	180164359	+	0	NA	intron (NM_001004128, intron 11 of 12)	intron (NM_001004128, intron 11 of 12)	-3035	NR_026900	200058	Hs.719176	NR_026900		FLJ23867	-	uncharacterized protein FLJ23867	ncRNA
19.0309-2	chr8	58982474	58982973	+	0	NA	intron (NM_147189, intron 3 of 4)	intron (NM_147189, intron 3 of 4)	75610	NM_147189	90362	Hs.154652	NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
14.4009-3	chr7	64703777	64704276	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-134686	NM_001287534	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
17.1444-2	chr1	175363778	175364277	+	0	NA	intron (NM_001328635, intron 5 of 22)	intron (NM_001328635, intron 5 of 22)	-201798	NM_001319230	9674	Hs.518138	NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
16.8613	chr1	93794295	93794794	+	0	NA	intron (NR_034089, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	16824	NR_034089	100131564	Hs.732666	NR_034089		CCDC18-AS1	-	CCDC18 antisense RNA 1	ncRNA
26.3078-2	chr4	26841121	26841620	+	0	NA	Intergenic	L2|LINE|L2	20496	NR_134675	105374546	Hs.548859	NR_134673		LOC105374546	-	uncharacterized LOC105374546	ncRNA
14.7496	chr12	22421136	22421635	+	0	NA	intron (NM_003034, intron 2 of 4)	THE1C|LTR|ERVL-MaLR	66263	NM_003034	6489	Hs.408614	NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
16.0555-3	chr6	90007698	90008197	+	0	NA	intron (NM_002043, intron 2 of 8)	intron (NM_002043, intron 2 of 8)	17071	NM_002043	2570	Hs.379330	NM_002043	ENSG00000111886	GABRR2	-	gamma-aminobutyric acid type A receptor rho2 subunit	protein-coding
21.4874	chr6	159630826	159631325	+	0	NA	intron (NM_032532, intron 4 of 22)	intron (NM_032532, intron 4 of 22)	-40036	NR_121668	101929122	Hs.134215	NR_121668		LOC101929122	-	uncharacterized LOC101929122	ncRNA
15.8838	chr11	60839574	60840073	+	0	NA	Intergenic	Intergenic	-21612	NM_001346456	921	Hs.58685	NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
17.2125-4	chr14	89703008	89703507	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	180197	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
19.5468-8	chr7	122736370	122736869	+	0	NA	Intergenic	Intergenic	-100865	NM_016945	50833	Hs.272395	NM_016945	ENSG00000128519	TAS2R16	T2R16	taste 2 receptor member 16	protein-coding
22.4642-5	chr14	50464678	50465177	+	0	NA	TTS (NR_126500)	TTS (NR_126500)	-5075	NR_126499	283551	Hs.292580	NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
21.4086	chr13	53323446	53323945	+	0	NA	Intergenic	Intergenic	-9748	NM_001011705	11061	Hs.421391	NM_007015	ENSG00000136110	CNMD	BRICD3|CHM-I|CHM1|LECT1|MYETS1	chondromodulin	protein-coding
34.2022	chr21	23763326	23763825	+	0	NA	Intergenic	AluSx3|SINE|Alu	292639	NR_038400	54143	Hs.352631	NR_038400	ENSG00000184856	LINC00308	C21orf74|NCRNA00308|PRED16	long intergenic non-protein coding RNA 308	ncRNA
14.2597-2	chr8	103934106	103934605	+	0	NA	intron (NR_126339, intron 2 of 2)	intron (NR_126339, intron 2 of 2)	57856	NR_126338	100506753	Hs.602901	NR_126338		AZIN1-AS1	-	AZIN1 antisense RNA 1	ncRNA
13.8091-11	chr7	38604838	38605337	+	0	NA	intron (NM_139316, intron 1 of 19)	MLT1B|LTR|ERVL-MaLR	66080	NM_001635	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
15.817-2	chr14	20334932	20335431	+	0	NA	Intergenic	SVA_B|Other|Other	-9246	NM_001005501	390431	Hs.551345	NM_001005501	ENSG00000165762	OR4K2	OR14-15	olfactory receptor family 4 subfamily K member 2	protein-coding
29.7062	chr7	108102032	108102531	+	0	NA	Intergenic	Intergenic	-5440	NM_005010	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
20.4479	chr9	124503398	124503897	+	0	NA	intron (NM_032552, intron 3 of 16)	intron (NM_032552, intron 3 of 16)	-1417	NM_138709	153090	Hs.522378	NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
13.0452	chr8	25140810	25141309	+	0	NA	intron (NM_024940, intron 5 of 51)	intron (NM_024940, intron 5 of 51)	-61859	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
14.2251	chr7	23079459	23079958	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-25938	NM_032581	84668	Hs.85603	NM_032581	ENSG00000122591	FAM126A	DRCTNNB1A|HCC|HLD5|HYCC1	family with sequence similarity 126 member A	protein-coding
19.2812-3	chr12	107812620	107813119	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	98504	NM_001347944	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding
20.5601	chr6	97065895	97066394	+	0	NA	3' UTR (NM_020482, exon 7 of 7)	3' UTR (NM_020482, exon 7 of 7)	55143	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
28.3565	chr12	70238070	70238569	+	0	NA	intron (NM_182530, intron 1 of 24)	intron (NM_182530, intron 1 of 24)	19216	NM_182530	196446	Hs.253773	NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor-like	protein-coding
26.4207	chr12	66032063	66032562	+	0	NA	intron (NR_120432, intron 1 of 4)	intron (NR_120432, intron 1 of 4)	3840	NR_120433	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA
13.6251-3	chr2	174277348	174277847	+	0	NA	Intergenic	MIR|SINE|MIR	58036	NM_145810	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
15.0307-5	chrX	124913670	124914169	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-329826	NR_110409	101928495	Hs.545998	NR_110409	ENSG00000237208	LOC101928495	-	uncharacterized LOC101928495	ncRNA
30.6399-2	chr4	31240150	31240649	+	0	NA	Intergenic	LTR1B|LTR|ERV1	67633	NR_125935	102723778	Hs.210739	NR_125935	ENSG00000251182	LOC102723778	-	uncharacterized LOC102723778	ncRNA
14.2829-4	chr16	1649965	1650464	+	0	NA	intron (NM_014714, intron 4 of 30)	SVA_F|Other|Other	11895	NM_014714	9742	Hs.389438	NM_014714	ENSG00000187535	IFT140	MZSDS|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140	protein-coding
24.7237	chr3	160703790	160704289	+	0	NA	intron (NM_001317911, intron 2 of 3)	intron (NM_001317911, intron 2 of 3)	115653	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
14.3652-2	chr4	71081262	71081761	+	0	NA	Intergenic	Intergenic	-10277	NM_152997	260436	Hs.733448	NM_152997	ENSG00000181617	FDCSP	C4orf7|FDC-SP	follicular dendritic cell secreted protein	protein-coding
19.5861-4	chr2	170431027	170431526	+	0	NA	promoter-TSS (NR_104020)	promoter-TSS (NR_104020)	-845	NM_001322046	79675	Hs.529276	NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
34.8812	chr7	80627153	80627652	+	0	NA	Intergenic	L2a|LINE|L2	-78735	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
19.4692	chr12	29091382	29091881	+	0	NA	Intergenic	Intergenic	-210305	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
24.2136-2	chr5	27448146	27448645	+	0	NA	Intergenic	L1M2|LINE|L1	-24004	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
15.5129-4	chr4	100279842	100280341	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-5889	NM_000669	126	Hs.654537	NM_000669	ENSG00000248144	ADH1C	ADH3	alcohol dehydrogenase 1C (class I), gamma polypeptide	protein-coding
20.2965	chr17	76454659	76455158	+	0	NA	intron (NM_173628, intron 61 of 80)	intron (NM_173628, intron 61 of 80)	-26084	NR_102401	100996295	Hs.615304	NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
27.4958-3	chr2	202003673	202004172	+	0	NA	3' UTR (NM_001308043, exon 5 of 5)	3' UTR (NM_001308043, exon 5 of 5)	-1076	NM_001202515	8837	Hs.390736	NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD like apoptosis regulator	protein-coding
17.2584	chr2	168541201	168541700	+	0	NA	Intergenic	Intergenic	-133732	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	beta-1,3-galactosyltransferase 1	protein-coding
13.7366-3	chr16	84543063	84543562	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-5024	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
17.7469-2	chr9	116693543	116694042	+	0	NA	intron (NM_001318040, intron 1 of 13)	intron (NM_001318040, intron 1 of 13)	55230	NM_001318042	114991	Hs.349208	NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
17.0774-2	chr7	65857729	65858228	+	0	NA	intron (NR_026873, intron 3 of 4)	SVA_E|Other|Other	7417	NR_026873	285908	Hs.50755	NM_181722	ENSG00000179406	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
17.4958-15	chr9	140144627	140145126	+	0	NA	promoter-TSS (NM_001256700)	promoter-TSS (NM_001256700)	-837	NR_046340	441476	Hs.372640	NM_001004353	ENSG00000197768	STPG3	C9orf173	sperm-tail PG-rich repeat containing 3	protein-coding
13.0715	chr13	52092946	52093445	+	0	NA	Intergenic	Intergenic	-33530	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
21.5614	chr5	121920593	121921092	+	0	NA	promoter-TSS (NR_134281)	promoter-TSS (NR_134281)	-547	NR_134281	101927357	Hs.639856	NR_134281		LOC101927357	-	uncharacterized LOC101927357	ncRNA
19.0658-2	chr21	32870098	32870597	+	0	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	60943	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
16.9037	chrX	39313129	39313628	+	0	NA	Intergenic	Intergenic	-62350	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
15.986-4	chr7	91744941	91745440	+	0	NA	intron (NM_000786, intron 9 of 9)	L3|LINE|CR1	18650	NM_000786	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
20.9691-2	chr6	152614424	152614923	+	0	NA	intron (NM_182961, intron 95 of 145)	intron (NM_182961, intron 95 of 145)	-86992	NR_120501	100505475	Hs.571203	NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
22.1254	chr6	110733543	110734042	+	0	NA	intron (NM_003649, intron 2 of 4)	MLT1I|LTR|ERVL-MaLR	2961	NM_003649	8528	Hs.591348	NM_003649	ENSG00000203797	DDO	DASOX|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
13.9362-3	chr12	3403667	3404166	+	0	NA	Intergenic	Intergenic	-86599	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
27.9317	chr7	127449341	127449840	+	0	NA	intron (NM_014390, intron 11 of 23)	intron (NM_014390, intron 11 of 23)	157547	NM_014390	27044	Hs.122523	NM_014390	ENSG00000197157	SND1	TDRD11|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
17.0553-4	chr2	11577681	11578180	+	0	NA	Intergenic	Intergenic	28373	NM_001278276	1876	Hs.603093	NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
15.3462-3	chr17	55641163	55641662	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-40454	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
15.817-3	chr14	21069105	21069604	+	0	NA	intron (NR_122043, intron 3 of 4)	HERVL18-int|LTR|ERVL	-10372	NM_001024822	493901	Hs.729466	NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
16.1439	chr2	205229718	205230217	+	0	NA	Intergenic	Intergenic	-180549	NM_001302769	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
14.9214-6	chr1	33518616	33519115	+	0	NA	Intergenic	SVA_F|Other|Other	-16353	NM_001625	204	Hs.470907	NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
14.1005-4	chrX	49697429	49697928	+	0	NA	intron (NM_001127899, intron 3 of 14)	intron (NM_001127899, intron 3 of 14)	10453	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
15.5129-3	chr10	62171059	62171558	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-21566	NM_020987	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
13.4199-5	chr2	203304403	203304902	+	0	NA	intron (NM_001204, intron 1 of 12)	SVA_B|Other|Other	63602	NM_001204	659	Hs.471119	NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
40.3574	chr8	66057482	66057981	+	0	NA	Intergenic	Intergenic	34844	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA
20.8884-3	chr12	29090095	29090594	+	0	NA	Intergenic	Intergenic	-211592	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
15.0031-2	chr20	19899492	19899991	+	0	NA	intron (NM_001242581, intron 2 of 11)	intron (NM_001242581, intron 2 of 11)	29531	NM_018993	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
22.1968-3	chr9	67275388	67275887	+	0	NA	intron (NR_002817, intron 3 of 3)	AluJb|SINE|Alu	13855	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
26.4782	chr21	45267215	45267714	+	0	NA	Intergenic	Intergenic	-17652	NM_020132	56894	Hs.248785	NM_020132	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
27.3755-2	chr2	137062950	137063449	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-187474	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
23.9254	chr7	75513742	75514241	+	0	NA	intron (NM_001040456, intron 3 of 3)	intron (NM_001040456, intron 3 of 3)	5681	NM_001040457	57414	Hs.488827	NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
14.1117-2	chr15	30684912	30685411	+	0	NA	intron (NM_148911, intron 1 of 8)	CpG	703	NM_148911	89832	Hs.510853	NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10	CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion	protein-coding
14.2366-2	chr2	11220396	11220895	+	0	NA	Intergenic	Intergenic	51657	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
19.0309-6	chr5	5490813	5491312	+	0	NA	TTS (NM_015325)	TTS (NM_015325)	68276	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
13.6856-3	chr6	15153425	15153924	+	0	NA	Intergenic	AluSp|SINE|Alu	-92532	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
13.4679-3	chr14	32774024	32774523	+	0	NA	Intergenic	Intergenic	-24206	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
18.2102-7	chrY	15216222	15216721	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	198855	NR_136724	8653	Hs.99120	NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3, Y-linked	protein-coding
17.7469-3	chr21	30764563	30765062	+	0	NA	Intergenic	SVA_A|Other|Other	19991	NR_046564	100874322	Hs.326404	NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
17.8516	chr13	28099551	28100050	+	0	NA	Intergenic	Intergenic	-75061	NM_001166263	219402	Hs.534582	NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
29.6257	chr13	66953019	66953518	+	0	NA	intron (NM_001318372, intron 4 of 4)	intron (NM_001318372, intron 4 of 4)	160886	NR_039853	100616205		NR_039853	ENSG00000263561	MIR4704	-	microRNA 4704	ncRNA
20.8938	chr3	150487756	150488255	+	0	NA	Intergenic	MIR|SINE|MIR	-6742	NM_005067	6478	Hs.477959	NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
17.122-2	chr6	23004207	23004706	+	0	NA	Intergenic	Intergenic	-286303	NR_134614	105374972	Hs.484889	NR_134613		LOC105374972	-	uncharacterized LOC105374972	ncRNA
13.1247	chr12	1927377	1927876	+	0	NA	intron (NM_172364, intron 26 of 37)	SVA_D|Other|Other	-1807	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
32.8233	chr7	144214146	144214645	+	0	NA	intron (NM_001042482, intron 7 of 7)	MIRb|SINE|MIR	-107075	NM_001080413	135935	Hs.558628	NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
18.2681	chr8	101450424	101450923	+	0	NA	Intergenic	Intergenic	55682	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
19.1009-3	chr22	29446209	29446708	+	0	NA	exon (NM_001206998, exon 8 of 9)	exon (NM_001206998, exon 8 of 9)	11449	NM_015370	25770	Hs.50891	NM_015370	ENSG00000100249	C22orf31	HS747E2A|bK747E2.1	chromosome 22 open reading frame 31	protein-coding
14.0121-6	chr1	191244758	191245257	+	0	NA	Intergenic	L1PA10|LINE|L1	650987	NR_033922	440704	Hs.518802	NR_033922	ENSG00000231175	LINC01720	-	long intergenic non-protein coding RNA 1720	ncRNA
13.4486-2	chr15	78351787	78352286	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	17958	NM_015079	23102	Hs.567426	NM_015079	ENSG00000167202	TBC1D2B	-	TBC1 domain family member 2B	protein-coding
16.6354-8	chr5	65618893	65619392	+	0	NA	Intergenic	Intergenic	178479	NM_139168	140890	Hs.49367	NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
14.7625	chr13	43615046	43615545	+	0	NA	intron (NM_013238, intron 1 of 5)	LTR5_Hs|LTR|ERVK	17933	NM_013238	29103	Hs.438830	NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
16.2893	chr1	209721405	209721904	+	0	NA	Intergenic	Intergenic	-35391	NM_020439	57172	Hs.199068	NM_020439	ENSG00000008118	CAMK1G	CLICK3|CLICKIII|VWS1|dJ272L16.1	calcium/calmodulin dependent protein kinase IG	protein-coding
24.168	chr11	125245891	125246390	+	0	NA	intron (NM_022062, intron 5 of 12)	intron (NM_022062, intron 5 of 12)	-118970	NM_001301851	403312	Hs.450611	NM_203452		LOC403312	-	putative uncharacterized protein MGC39545	protein-coding
20.9366	chr5	8614384	8614883	+	0	NA	Intergenic	Intergenic	153595	NR_039663	100616142		NR_039663	ENSG00000247516	MIR4458	mir-4458	microRNA 4458	ncRNA
30.4624	chr3	194798454	194798953	+	0	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	-16614	NR_104188	100874528	Hs.581659	NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
14.4977-7	chr9	129820660	129821159	+	0	NA	intron (NM_001190728, intron 6 of 16)	intron (NM_001190728, intron 6 of 16)	64135	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
28.8273-4	chr4	19850516	19851015	+	0	NA	Intergenic	Intergenic	-402763	NM_004787	9353	Hs.29802	NM_004787	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit guidance ligand 2	protein-coding
25.7675	chr15	68974589	68975088	+	0	NA	intron (NM_001190456, intron 2 of 11)	intron (NM_001190456, intron 2 of 11)	40996	NM_001324015	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
24.2481	chr6	33662068	33662567	+	0	NA	intron (NM_002224, intron 56 of 57)	intron (NM_002224, intron 56 of 57)	-3588	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
13.7161-2	chr1	1234275	1234774	+	0	NA	intron (NM_030649, intron 10 of 23)	intron (NM_030649, intron 10 of 23)	-2974	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
13.4775-4	chr4	148975318	148975817	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	271821	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
14.9214-3	chrX	123261802	123262301	+	0	NA	Intergenic	SVA_D|Other|Other	166495	NM_001042750	10735	Hs.496710	NM_006603	ENSG00000101972	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding
13.4104-4	chr21	36243686	36244185	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	17052	NM_001001890	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
19.5861-3	chr1	173443771	173444270	+	0	NA	intron (NR_037845, intron 1 of 2)	LTR5B|LTR|ERVK	2274	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
26.9465	chr5	102904894	102905393	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-6641	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding
17.6447-5	chr6	20332809	20333308	+	0	NA	Intergenic	Intergenic	-69079	NM_001949	1871	Hs.269408	NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
16.5365-3	chr9	129890688	129891187	+	0	NA	intron (NM_001190728, intron 7 of 16)	intron (NM_001190728, intron 7 of 16)	-5893	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
13.8091-4	chr2	52752036	52752535	+	0	NA	Intergenic	LTR1D|LTR|ERV1	154499	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA
20.7676	chr4	99665965	99666464	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-86402	NM_005723	10098	Hs.118118	NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
17.0115	chr15	101998972	101999471	+	0	NA	intron (NM_138322, intron 2 of 10)	intron (NM_138322, intron 2 of 10)	30966	NM_138319	5046	Hs.498494	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
20.942	chr6	93883145	93883644	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	245906	NM_001288630	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
19.0658	chr2	241523947	241524446	+	0	NA	non-coding (NR_103792, exon 1 of 1)	non-coding (NR_103792, exon 1 of 1)	1537	NR_103792	101752400	Hs.585987	NR_103792	ENSG00000260942	CAPN10-AS1	locus959	CAPN10 antisense RNA 1 (head to head)	ncRNA
14.7886-2	chr1	84294687	84295186	+	0	NA	intron (NR_119374, intron 2 of 2)	L2b|LINE|L2	31293	NR_119374	101927560	Hs.559661	NR_119374	ENSG00000233008	LOC101927560	-	uncharacterized LOC101927560	ncRNA
15.2578	chr13	31378499	31378998	+	0	NA	intron (NR_047012, intron 1 of 1)	intron (NR_047012, intron 1 of 1)	1405	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
15.9176	chr2	156381644	156382143	+	0	NA	Intergenic	MER130|Unknown?|Unknown?	729550	NR_110250	101929378	Hs.171192	NR_110249	ENSG00000226383	LINC01876	-	long intergenic non-protein coding RNA 1876	ncRNA
14.2022	chr5	7521820	7522319	+	0	NA	intron (NM_020546, intron 3 of 24)	intron (NM_020546, intron 3 of 24)	125726	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
14.5223-2	chr17	41487057	41487556	+	0	NA	Intergenic	Intergenic	10953	NM_001661	379	Hs.183153	NM_001661	ENSG00000175906	ARL4D	ARF4L|ARL6	ADP ribosylation factor like GTPase 4D	protein-coding
15.9346	chr9	108822121	108822620	+	0	NA	Intergenic	MER52A|LTR|ERV1	365564	NM_018112	55151	Hs.411925	NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
33.2057	chr6	151776764	151777263	+	0	NA	intron (NM_024573, intron 2 of 4)	LTR5_Hs|LTR|ERVK	3620	NM_024573	79624	Hs.15929	NM_024573	ENSG00000146476	ARMT1	C6orf211	acidic residue methyltransferase 1	protein-coding
16.1798-4	chr8	41648346	41648845	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	6545	NM_020477	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
22.4185	chr2	202906794	202907293	+	0	NA	Intergenic	L2a|LINE|L2	7733	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
18.1248	chr11	66633833	66634332	+	0	NA	intron (NM_001040716, intron 10 of 22)	intron (NM_001040716, intron 10 of 22)	9206	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
16.2525	chr5	134745152	134745651	+	0	NA	Intergenic	SVA_C|Other|Other	-9824	NM_004893	9555	Hs.420272	NM_004893	ENSG00000113648	H2AFY	H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2	H2A histone family member Y	protein-coding
20.4672	chr22	21555935	21556833	+	0	NA	Intergenic	Intergenic	35192	NR_108107	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B (non-protein coding)	ncRNA
16.3639	chr3	132995401	132995900	+	0	NA	intron (NM_001282865, intron 2 of 3)	intron (NM_001282865, intron 2 of 3)	-19685	NR_110812	101927455	Hs.570550	NR_110812	ENSG00000251011	TMEM108-AS1	-	TMEM108 antisense RNA 1	ncRNA
14.5346-2	chr2	19418570	19419069	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-129371	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
13.0364	chr6	96827170	96827669	+	0	NA	Intergenic	Intergenic	-142283	NM_015323	23376	Hs.149367	NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
14.2366-3	chr9	126531903	126532402	+	0	NA	intron (NM_024820, intron 3 of 20)	intron (NM_024820, intron 3 of 20)	160265	NM_020946	57706	Hs.744995	NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
16.6555-3	chr2	153108293	153108792	+	0	NA	Intergenic	Intergenic	-76036	NM_005843	10254	Hs.17200	NM_005843	ENSG00000115145	STAM2	Hbp|STAM2A|STAM2B	signal transducing adaptor molecule 2	protein-coding
15.1999-3	chr9	129845115	129845614	+	0	NA	intron (NM_001190728, intron 7 of 16)	intron (NM_001190728, intron 7 of 16)	39680	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
17.5696-2	chr9	77661785	77662284	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-18688	NM_152420	138199	Hs.567688	NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
13.4582	chr5	9898392	9898891	+	0	NA	intron (NR_027112, intron 2 of 12)	LTR82B|LTR|ERVL	5295	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LINC02112	-	long intergenic non-protein coding RNA 2112	ncRNA
20.0174	chr9	137462046	137462545	+	0	NA	Intergenic	Intergenic	-71356	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	EDSC	collagen type V alpha 1 chain	protein-coding
33.4486	chr7	74459904	74460403	+	0	NA	intron (NM_030798, intron 10 of 10)	intron (NM_030798, intron 10 of 10)	29564	NM_001281441	81554	Hs.529623	NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
21.1351	chr3	157260872	157261371	+	0	NA	promoter-TSS (NM_001099777)	promoter-TSS (NM_001099777)	-12	NM_001130001	152078	Hs.259046	NM_001099777	ENSG00000174899	PQLC2L	C3orf55	PQ loop repeat containing 2 like	protein-coding
19.7062-2	chr4	6732561	6733060	+	0	NA	Intergenic	L3|LINE|CR1	14968	NM_018366	55330	Hs.7570	NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex 1 subunit 4	protein-coding
24.6852-2	chr7	22539593	22540092	+	0	NA	promoter-TSS (NM_207342)	promoter-TSS (NM_207342)	59	NM_207342	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
15.2433-2	chr16	77490832	77491331	+	0	NA	Intergenic	Intergenic	-22070	NM_001326358	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding
14.7756	chr2	137660989	137661488	+	0	NA	intron (NM_001316349, intron 2 of 27)	intron (NM_001316349, intron 2 of 27)	138106	NM_001316349	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin type 1 domain containing 7B	protein-coding
19.5468-9	chr1	53106568	53107067	+	0	NA	intron (NR_135156, intron 2 of 5)	MER21C|LTR|ERVL	7801	NR_135156	348378	Hs.424589	NM_001042693	ENSG00000182183	FAM159A	PRO7171|WWLS2783	family with sequence similarity 159 member A	protein-coding
16.6354-4	chr12	83240956	83241455	+	0	NA	intron (NM_001320321, intron 1 of 10)	L1PA6|LINE|L1	160271	NM_001320322	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
13.7572-4	chr4	78090562	78091061	+	0	NA	3' UTR (NM_004354, exon 8 of 8)	3' UTR (NM_004354, exon 8 of 8)	12454	NM_004354	901	Hs.740456	NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
19.6257	chr1	48347405	48347904	+	0	NA	intron (NM_001194986, intron 2 of 6)	intron (NM_001194986, intron 2 of 6)	114908	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
23.6856	chr1	205317873	205318372	+	0	NA	intron (NM_001271863, intron 2 of 8)	intron (NM_001271863, intron 2 of 8)	8006	NM_018203	55220	Hs.10414	NM_018203	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding
21.209	chr2	166937393	166937892	+	0	NA	promoter-TSS (NR_110260)	promoter-TSS (NR_110260)	-399	NR_110260	101929680	Hs.662210	NR_110260	ENSG00000236107	LOC101929680	-	uncharacterized LOC101929680	ncRNA
19.2812-10	chr1	94626364	94626863	+	0	NA	Intergenic	Intergenic	-39908	NM_000350	24	Hs.416707	NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
19.7062-11	chr6	101744054	101744553	+	0	NA	Intergenic	Intergenic	-102558	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
13.9686-2	chr3	121884245	121884744	+	0	NA	Intergenic	SVA_F|Other|Other	-18036	NM_000388	846	Hs.435615	NM_000388	ENSG00000036828	CASR	CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1	calcium sensing receptor	protein-coding
14.389	chr1	70952995	70953494	+	0	NA	Intergenic	Intergenic	76343	NM_153742	1491	Hs.19904	NM_001902	ENSG00000116761	CTH	-	cystathionine gamma-lyase	protein-coding
15.986-7	chr5	174714900	174715399	+	0	NA	Intergenic	Intergenic	156014	NM_000794	1812	Hs.2624	NM_000794	ENSG00000184845	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
17.3755	chr7	134208670	134209169	+	0	NA	Intergenic	AluJr|SINE|Alu	-3425	NM_020299	57016	Hs.116724	NM_020299	ENSG00000198074	AKR1B10	AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI	aldo-keto reductase family 1 member B10	protein-coding
46.2342	chr6	143143840	143144339	+	0	NA	intron (NM_006734, intron 2 of 9)	LTR88b|LTR|Gypsy?	122249	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
17.9317-4	chrUn_gl000232	2362	2861	+	0	NA	NA	LTR5_Hs|LTR|ERVK	NA	NA								
15.2433-3	chr17	77694591	77695090	+	0	NA	Intergenic	Intergenic	-10025	NM_178543	339221	Hs.114084	NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
19.5078	chr6	119482469	119482968	+	0	NA	Intergenic	Intergenic	-12360	NM_001288576	79632	Hs.443789	NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
15.4821-3	chr8	73494283	73494782	+	0	NA	intron (NM_004770, intron 2 of 2)	MER70A|LTR|ERVL	44906	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
23.7059-8	chr6	94173783	94174282	+	0	NA	Intergenic	LTR33|LTR|ERVL	-44732	NM_001288629	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
23.5655	chr1	231775443	231775942	+	0	NA	intron (NM_001164556, intron 1 of 4)	intron (NM_001164556, intron 1 of 4)	13131	NM_001164540	27185	Hs.13318	NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	disrupted in schizophrenia 1	protein-coding
20.5306	chr8	128806434	128806933	+	0	NA	promoter-TSS (NR_003367)	promoter-TSS (NR_003367)	-96	NR_003367	5820	Hs.133107	NR_003367	ENSG00000249859	PVT1	LINC00079|MYC|NCRNA00079|onco-lncRNA-100	Pvt1 oncogene (non-protein coding)	ncRNA
16.1979-3	chr11	35026587	35027086	+	0	NA	Intergenic	Intergenic	63452	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
15.1286-2	chr2	128111339	128111838	+	0	NA	Intergenic	SVA_D|Other|Other	-10783	NM_006609	10746	Hs.145605	NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
13.279-4	chr5	136984939	136985438	+	0	NA	intron (NM_017415, intron 8 of 14)	MLT1F1|LTR|ERVL-MaLR	-1850	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
18.6967-5	chr11	32162274	32162773	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	2935	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
18.4164-5	chr22	29742611	29743110	+	0	NA	intron (NM_001127, intron 11 of 22)	MLT1K|LTR|ERVL-MaLR	-13604	NR_037426	100500833		NR_037426	ENSG00000280968	MIR3653	mir-3653	microRNA 3653	ncRNA
17.7728-5	chr1	87678454	87679234	+	0	NA	intron (NM_001290053, intron 1 of 3)	intron (NM_001290053, intron 1 of 3)	492	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
15.1428-5	chr20	25214974	25215473	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13483	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
14.1005	chr17	55662951	55663450	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	22573	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
14.4009-2	chr4	145993	146492	+	0	NA	intron (NM_001289930, intron 1 of 1)	LTR5_Hs|LTR|ERVK	21884	NR_110529	255403	Hs.636638	NM_001039127	ENSG00000250312	ZNF718	-	zinc finger protein 718	protein-coding
19.8716	chr12	40564345	40564844	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-54219	NM_198578	120892	Hs.187636	NM_198578	ENSG00000188906	LRRK2	AURA17|DARDARIN|PARK8|RIPK7|ROCO2	leucine rich repeat kinase 2	protein-coding
25.8503	chr3	194967264	194967763	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	1136	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
13.3536-2	chr5	142997609	142998108	+	0	NA	Intergenic	Intergenic	-61567	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
14.4249	chr20	33850378	33850877	+	0	NA	intron (NM_006690, intron 4 of 8)	LTR5_Hs|LTR|ERVK	15333	NR_102706	101410538	Hs.356273	NR_102705		MMP24-AS1	-	MMP24 antisense RNA 1	ncRNA
14.4977-4	chr1	183257928	183258427	+	0	NA	intron (NM_170706, intron 4 of 10)	intron (NM_170706, intron 4 of 10)	15832	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
14.1567	chr6	104248103	104248602	+	0	NA	Intergenic	Intergenic	1059069	NM_001321083	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
15.986-2	chr17	25831467	25831966	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	32680	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
27.5203	chr14	91686689	91687188	+	0	NA	intron (NM_001286471, intron 13 of 13)	intron (NM_001286471, intron 13 of 13)	23914	NM_001177676	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
31.6622	chr5	37886241	37886740	+	0	NA	Intergenic	Intergenic	12963	NM_001278094	100861519	Hs.536820	NM_001278094	ENSG00000248587	GDNF-AS1	GDNFOS	GDNF antisense RNA 1 (head to head)	protein-coding
16.216	chr12	26439023	26439522	+	0	NA	Intergenic	Intergenic	90766	NM_005086	8082	Hs.183428	NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
16.7778-3	chr10	84079271	84079770	+	0	NA	intron (NM_001165973, intron 2 of 10)	intron (NM_001165973, intron 2 of 10)	-86844	NR_120666	101929590	Hs.733268	NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA
13.4104-5	chr2	44978812	44979311	+	0	NA	intron (NM_024766, intron 8 of 10)	MSTB|LTR|ERVL-MaLR	189585	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
16.4016-3	chr4	170749835	170750334	+	0	NA	Intergenic	SVA_B|Other|Other	-70991	NM_017867	54969	Hs.406756	NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
17.7211-6	chr5	99723811	99724310	+	0	NA	promoter-TSS (NR_027503)	promoter-TSS (NR_027503)	-102	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase beta pseudogene	pseudo
36.8825-2	chr5	10485155	10485654	+	0	NA	Intergenic	Intergenic	7255	NR_106747	102465138		NR_106747	ENSG00000277073	MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
14.4977-5	chr13	67713013	67713512	+	0	NA	intron (NM_001318372, intron 2 of 4)	intron (NM_001318372, intron 2 of 4)	91206	NM_203487	5101	Hs.654709	NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
13.2057-4	chr13	50336541	50337040	+	0	NA	intron (NM_002267, intron 1 of 16)	SVA_C|Other|Other	30267	NM_002267	3839	Hs.527919	NM_002267	ENSG00000102753	KPNA3	IPOA4|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
16.968	chr5	131594751	131595250	+	0	NA	intron (NM_003687, intron 1 of 6)	intron (NM_003687, intron 1 of 6)	1649	NM_003687	8572	Hs.424312	NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
15.5284-2	chr2	213002901	213003400	+	0	NA	intron (NM_005235, intron 1 of 27)	MSTC|LTR|ERVL-MaLR	287934	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
14.7366-2	chr12	7526987	7527486	+	0	NA	exon (NM_174941, exon 13 of 20)	exon (NM_174941, exon 13 of 20)	69545	NM_174941	283316	Hs.631727	NM_174941	ENSG00000177675	CD163L1	CD163B|M160|SCARI2	CD163 molecule like 1	protein-coding
23.0452	chr1	41037665	41038164	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	40681	NM_152373	127396	Hs.524767	NM_152373	ENSG00000117010	ZNF684	-	zinc finger protein 684	protein-coding
13.7675	chr2	69395885	69396384	+	0	NA	intron (NM_053034, intron 13 of 14)	intron (NM_053034, intron 13 of 14)	65320	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
27.7211	chr7	142512715	142513214	+	0	NA	Intergenic	Intergenic	34207	NR_001296	154754	Hs.449281	NR_001296		PRSS3P2	T6|TRY6	protease, serine 3 pseudogene 2	pseudo
21.4813	chr3	126709588	126710087	+	0	NA	intron (NM_032242, intron 1 of 30)	intron (NM_032242, intron 1 of 30)	2400	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
26.6555	chr3	122815509	122816008	+	0	NA	intron (NM_006810, intron 3 of 16)	intron (NM_006810, intron 3 of 16)	29902	NM_006810	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
15.8838-2	chr2	50496080	50496579	+	0	NA	intron (NM_001135659, intron 18 of 23)	intron (NM_001135659, intron 18 of 23)	78563	NM_001330092	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
15.784	chr3	155898233	155898732	+	0	NA	intron (NM_003471, intron 1 of 13)	L2a|LINE|L2	37731	NM_003471	7881	Hs.654519	NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A member regulatory beta subunit 1	protein-coding
16.8403	chr4	16078202	16078701	+	0	NA	promoter-TSS (NM_006017)	promoter-TSS (NM_006017)	-710	NM_006017	8842	Hs.614734	NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
19.6658-2	chr13	70189469	70189968	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	393240	NR_125752	103689913	Hs.585628	NR_125752		LINC00383	LINC00401	long intergenic non-protein coding RNA 383	ncRNA
15.544	chr1	208489605	208490104	+	0	NA	Intergenic	Intergenic	-72189	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
14.1908	chr9	130262618	130263117	+	0	NA	intron (NM_001005373, intron 24 of 25)	intron (NM_001005373, intron 24 of 25)	48333	NM_001005374	90678	Hs.495188	NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
16.1979-2	chr3	108843539	108844038	+	0	NA	Intergenic	SVA_D|Other|Other	-6795	NM_014429	27136	Hs.591296	NM_014429	ENSG00000114487	MORC1	CT33|MORC|ZCW6	MORC family CW-type zinc finger 1	protein-coding
13.2514-2	chr14	58449465	58449964	+	0	NA	Intergenic	Intergenic	-117122	NM_001306087	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35 member F4	protein-coding
31.2901	chr9	129783911	129784410	+	0	NA	intron (NM_001190728, intron 3 of 16)	intron (NM_001190728, intron 3 of 16)	59656	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
19.4692-4	chr17	26304739	26305238	+	0	NA	Intergenic	Intergenic	-64700	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
17.1897	chr5	176969786	176970285	+	0	NA	intron (NM_001190946, intron 1 of 8)	intron (NM_001190946, intron 1 of 8)	11551	NM_001190946	54540	Hs.484289	NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
14.9621-11	chr2	196683540	196684039	+	0	NA	intron (NM_018897, intron 49 of 64)	L2c|LINE|L2	161937	NM_020342	57181	Hs.650158	NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2	solute carrier family 39 member 10	protein-coding
20.8884	chr2	65291985	65292484	+	0	NA	intron (NR_134966, intron 1 of 5)	intron (NR_134966, intron 1 of 5)	8739	NR_134966	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
14.7108-2	chr2	100260437	100260936	+	0	NA	intron (NM_001025108, intron 12 of 23)	intron (NM_001025108, intron 12 of 23)	-154168	NM_001321458	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
25.7187	chr8	128289074	128289573	+	0	NA	intron (NR_117099, intron 1 of 3)	intron (NR_117099, intron 1 of 3)	32441	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLo-2|LINC01244	cancer susceptibility candidate 21 (non-protein coding)	ncRNA
20.1863-2	chr12	1157310	1157809	+	0	NA	intron (NR_027949, intron 2 of 15)	intron (NR_027949, intron 2 of 15)	20645	NM_001301248	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
13.5754	chr5	73722243	73722742	+	0	NA	intron (NR_126354, intron 2 of 2)	intron (NR_126354, intron 2 of 2)	104181	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
30.7935-2	chr7	69787615	69788114	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	723959	NM_001127232	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19.2082	chr19	4449096	4449595	+	0	NA	intron (NM_001171091, intron 4 of 10)	intron (NM_001171091, intron 4 of 10)	3370	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
15.6864	chr9	45486471	45486970	+	0	NA	Intergenic	L1PA13|LINE|L1	-481430	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
27.3755-4	chr8	128642571	128643070	+	0	NA	Intergenic	SVA_E|Other|Other	103393	NR_117102	100270680	Hs.333720	NR_117101	ENSG00000249375	CASC11	CARLo-7|LINC00990|TCONS_00014535	cancer susceptibility candidate 11 (non-protein coding)	ncRNA
15.0585-2	chr3	194974947	194975446	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-6547	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
16.3827-2	chr7	147283652	147284151	+	0	NA	intron (NM_014141, intron 12 of 23)	MER91A|DNA|hAT-Tip100	-84870	NR_133930	105375556	Hs.667432	NR_133929	ENSG00000230190	LOC105375556	-	uncharacterized LOC105375556	ncRNA
17.4958-14	chr17	60721869	60722368	+	0	NA	intron (NM_006039, intron 1 of 29)	intron (NM_006039, intron 1 of 29)	17356	NM_006039	9902	Hs.7835	NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C type 2	protein-coding
14.4855	chr1	1515725	1516224	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5712	NM_014188	29101	Hs.30026	NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
14.2366-4	chr14	56592342	56592841	+	0	NA	intron (NM_021255, intron 1 of 5)	intron (NM_021255, intron 1 of 5)	7498	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
16.5758-3	chr4	182068493	182068992	+	0	NA	intron (NR_033918, intron 2 of 2)	intron (NR_033918, intron 2 of 2)	11560	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
15.7025-3	chr2	26887744	26888243	+	0	NA	Intergenic	SVA_B|Other|Other	-23757	NM_001029881	130106	Hs.591579	NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
15.0585	chr5	94725879	94726378	+	0	NA	promoter-TSS (NM_152548)	promoter-TSS (NM_152548)	-920	NM_152548	153643	Hs.276287	NM_152548	ENSG00000153347	FAM81B	-	family with sequence similarity 81 member B	protein-coding
18.8941-2	chr8	134091475	134091974	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	-19121	NM_006748	6503	Hs.75367	NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
14.7625-4	chr7	116200202	116200701	+	0	NA	3' UTR (NM_001753, exon 3 of 3)	3' UTR (NM_001753, exon 3 of 3)	34039	NM_001172897	857	Hs.74034	NM_001753	ENSG00000105974	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1	protein-coding
18.3565	chr7	39307966	39308465	+	0	NA	intron (NM_001166018, intron 5 of 10)	MER20B|DNA|hAT-Charlie	137730	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
14.4977-6	chr12	58721758	58722257	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	240332	NR_135022	105369785	Hs.539353	NR_135022	ENSG00000257541	LOC105369785	-	uncharacterized LOC105369785	ncRNA
27.7211-2	chr9	130063084	130063583	+	0	NA	intron (NM_032293, intron 2 of 27)	L3|LINE|CR1	36577	NM_032293	84253	Hs.29304	NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
22.0621	chr2	15383155	15383654	+	0	NA	intron (NM_015909, intron 44 of 51)	MLT1J1|LTR|ERVL-MaLR	318068	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
30.4721	chr1	55804068	55804567	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	113003	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
14.7108	chr14	96698006	96698505	+	0	NA	intron (NM_000623, intron 1 of 2)	intron (NM_000623, intron 1 of 2)	-24292	NM_000710	623	Hs.525572	NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
19.7062	chr2	10483718	10484647	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	13893	NM_001258357	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
13.7572	chr9	102058547	102059046	+	0	NA	Intergenic	Intergenic	74226	NM_006808	10952	Hs.191887	NM_006808	ENSG00000106803	SEC61B	-	Sec61 translocon beta subunit	protein-coding
13.2698-3	chr3	137663717	137664216	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-53692	NM_001002026	51208	Hs.655324	NM_016369	ENSG00000066405	CLDN18	SFTA5|SFTPJ	claudin 18	protein-coding
31.0018	chr6	93597933	93598432	+	0	NA	Intergenic	Intergenic	531118	NM_001288630	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
17.4958-7	chr8	106613223	106613722	+	0	NA	intron (NM_012082, intron 4 of 7)	intron (NM_012082, intron 4 of 7)	282325	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
45.4668	chr8	120119597	120120096	+	0	NA	3' UTR (NM_001324095, exon 8 of 8)	3' UTR (NM_001324095, exon 8 of 8)	-38825	NR_134297	101927513	Hs.676598	NR_134297	ENSG00000254278	LOC101927513	-	uncharacterized LOC101927513	ncRNA
40.3574-2	chr13	47196927	47197426	+	0	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	69880	NM_001164211	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
15.9688-2	chr2	128815812	128816311	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-30367	NM_001330302	79595	Hs.32995	NM_024545	ENSG00000136715	SAP130	-	Sin3A associated protein 130	protein-coding
21.152	chr9	2559441	2559940	+	0	NA	intron (NR_015375, intron 1 of 3)	L1M1|LINE|L1	-62084	NM_001018056	7436	Hs.370422	NM_003383	ENSG00000147852	VLDLR	CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH	very low density lipoprotein receptor	protein-coding
15.6384-2	chr12	108787633	108788132	+	0	NA	Intergenic	Intergenic	-54788	NM_004072	1240	Hs.197143	NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemerin chemokine-like receptor 1	protein-coding
14.2829-2	chr6	109126052	109126551	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-43318	NM_032131	84071	Hs.645481	NM_032131	ENSG00000118690	ARMC2	bA787I22.1	armadillo repeat containing 2	protein-coding
19.431-4	chrX	9846382	9846881	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-33781	NM_001320664	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
15.8004	chr11	875703	876202	+	0	NA	intron (NM_001142675, intron 10 of 12)	intron (NM_001142675, intron 10 of 12)	31506	NM_001025237	7106	Hs.654836	NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
17.7211	chr8	134115032	134115531	+	0	NA	promoter-TSS (NM_001282964)	promoter-TSS (NM_001282964)	29	NM_001045556	6503	Hs.75367	NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
15.817	chr3	127567986	127568675	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-26237	NM_001003794	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
14.4129	chr13	36173460	36173959	+	0	NA	intron (NM_015678, intron 47 of 57)	MLT1G1|LTR|ERVL-MaLR	-97952	NR_132116	100507114	Hs.236298	NR_132115	ENSG00000236036	LINC00445	-	long intergenic non-protein coding RNA 445	ncRNA
20.6854	chr3	103937915	103938414	+	0	NA	intron (NR_030330, intron 1 of 2)	L1PA8|LINE|L1	7941	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
30.8831	chr8	49835923	49836422	+	0	NA	Intergenic	CpG	-2173	NM_003068	6591	Hs.360174	NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
13.5655	chr4	86663067	86663566	+	0	NA	intron (NM_001025616, intron 3 of 9)	intron (NM_001025616, intron 3 of 9)	19695	NR_039656	100616349		NR_039656	ENSG00000266421	MIR4451	mir-4451	microRNA 4451	ncRNA
15.4516	chr18	33958100	33958599	+	0	NA	intron (NM_025135, intron 3 of 24)	intron (NM_025135, intron 3 of 24)	80690	NM_025135	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
14.1117	chr16	27700849	27701348	+	0	NA	intron (NM_015202, intron 8 of 27)	MLT1H2|LTR|ERVL-MaLR	139630	NM_015202	23247	Hs.460459	NM_015202	ENSG00000047578	KIAA0556	JBTS26	KIAA0556	protein-coding
20.7935	chr5	150974780	150975279	+	0	NA	Intergenic	Intergenic	-26524	NM_001447	2196	Hs.591255	NM_001447	ENSG00000086570	FAT2	CDHF8|CDHR9|HFAT2|MEGF1	FAT atypical cadherin 2	protein-coding
25.9517	chr5	158898814	158899313	+	0	NA	Intergenic	HAL1|LINE|L1	-5779	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
14.2136	chr6	86838582	86839081	+	0	NA	Intergenic	L1PB1|LINE|L1	-450380	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5	ncRNA
21.7653-2	chrX	10201177	10201676	+	0	NA	intron (NM_001830, intron 12 of 12)	MLT1J2|LTR|ERVL-MaLR	76441	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
17.4958-3	chr12	52844890	52845389	+	0	NA	intron (NM_005555, intron 1 of 8)	intron (NM_005555, intron 1 of 8)	771	NM_005555	3854	Hs.708950	NM_005555	ENSG00000185479	KRT6B	CK-6B|CK6B|K6B|KRTL1|PC2|PC4	keratin 6B	protein-coding
13.7161	chr3	140775624	140776123	+	0	NA	intron (NM_080862, intron 1 of 2)	intron (NM_080862, intron 1 of 2)	5629	NM_080862	92369	Hs.655112	NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
19.6658-3	chr2	158877680	158878179	+	0	NA	intron (NM_001135098, intron 2 of 8)	intron (NM_001135098, intron 2 of 8)	26238	NM_001135098	151531	Hs.128427	NM_173355	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
16.4016	chr9	122440255	122440754	+	0	NA	Intergenic	Intergenic	-256834	NR_132393	106146149	Hs.638938	NR_132393	ENSG00000261432	LINC01613	n341773	long intergenic non-protein coding RNA 1613	ncRNA
13.5952-3	chr8	48087932	48088431	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-12749	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
18.0967	chr6	167664747	167665246	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-39807	NM_001143947	54346	Hs.567508	NM_018974	ENSG00000112494	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
19.9568	chr2	121469659	121470158	+	0	NA	Intergenic	Intergenic	-84959	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
28.5078	chr3	17221133	17221632	+	0	NA	intron (NM_014744, intron 19 of 21)	intron (NM_014744, intron 19 of 21)	246694	NR_037465	100500913		NR_037465	ENSG00000154822	MIR3714	-	microRNA 3714	ncRNA
17.2354	chr12	2591200	2591699	+	0	NA	intron (NM_001129830, intron 5 of 47)	intron (NM_001129830, intron 5 of 47)	189937	NR_046579	100874235	Hs.667644	NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
14.8945-3	chr2	234548083	234548582	+	0	NA	intron (NM_019075, intron 1 of 4)	intron (NM_019075, intron 1 of 4)	3209	NM_019075	54575	Hs.554822	NM_019075	ENSG00000242515	UGT1A10	UDPGT|UGT-1J|UGT1-10|UGT1.10|UGT1J	UDP glucuronosyltransferase family 1 member A10	protein-coding
22.9328	chr9	17609415	17609914	+	0	NA	intron (NM_003026, intron 1 of 8)	intron (NM_003026, intron 1 of 8)	30712	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
15.3165-2	chr1	54094784	54095283	+	0	NA	intron (NM_147193, intron 1 of 9)	intron (NM_147193, intron 1 of 9)	104844	NM_147193	148979	Hs.306691	NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
15.5129-2	chr7	92350303	92350802	+	0	NA	intron (NM_001145306, intron 4 of 7)	MER115|DNA|hAT-Tip100	112679	NM_001259	1021	Hs.119882	NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
13.2975-2	chr2	9519045	9519544	+	0	NA	intron (NM_001135191, intron 19 of 26)	intron (NM_001135191, intron 19 of 26)	43495	NM_001319068	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
19.431-5	chr21	27764894	27765393	+	0	NA	promoter-TSS (NR_135516)	promoter-TSS (NR_135516)	-811	NR_135516	100996571	Hs.570432	NR_135515	ENSG00000197934	CYYR1-AS1	-	cysteine and tyrosine rich 1 antisense RNA 1	ncRNA
19.2082-2	chr3	180269215	180269714	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-50454	NM_133462	151613	Hs.43213	NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
22.3508	chr20	17627424	17627923	+	0	NA	intron (NM_004587, intron 3 of 24)	intron (NM_004587, intron 3 of 24)	35255	NM_004587	6238	Hs.472213	NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding
26.6959	chr12	54332127	54332626	+	0	NA	promoter-TSS (NM_017410)	promoter-TSS (NM_017410)	-200	NM_017410	3229	Hs.118608	NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
15.6384-3	chr3	38643889	38644388	+	0	NA	intron (NM_001099405, intron 12 of 26)	MIR|SINE|MIR	47025	NM_198056	6331	Hs.517898	NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
14.0671	chr1	210057981	210058480	+	0	NA	Intergenic	Intergenic	-53289	NM_001146262	255928	Hs.658866	NM_153262	ENSG00000143469	SYT14	SCAR11|sytXIV	synaptotagmin 14	protein-coding
53.4872	chr7	124918538	124919037	+	0	NA	intron (NR_110188, intron 3 of 8)	MLT1D|LTR|ERVL-MaLR	-14442	NR_110182	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
14.2597	chr8	18365609	18366108	+	0	NA	Intergenic	Intergenic	117103	NM_000015	10	Hs.2	NM_000015	ENSG00000156006	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2	protein-coding
16.3827	chr8	119589461	119589960	+	0	NA	intron (NM_001101676, intron 2 of 4)	intron (NM_001101676, intron 2 of 4)	-43530	NR_038210	552860	Hs.571527	NR_038210	ENSG00000281641	SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
14.4855-6	chr11	115592282	115592781	+	0	NA	Intergenic	Intergenic	12949	NR_135066	101928985	Hs.398155	NR_135066		LOC101928985	-	uncharacterized LOC101928985	ncRNA
17.0115-3	chr6	66879810	66880309	+	0	NA	Intergenic	SVA_D|Other|Other	382287	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	solute carrier family 25 member 51 pseudogene 1	pseudo
14.7625-2	chr1	114759297	114759796	+	0	NA	Intergenic	Intergenic	-63074	NM_001270805	148281	Hs.370963	NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
14.9485	chr6	22098645	22099144	+	0	NA	intron (NR_015410, intron 8 of 11)	L2a|LINE|L2	48528	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
17.1897-2	chr13	98856133	98856632	+	0	NA	intron (NM_005766, intron 1 of 26)	7SK|RNA|RNA	-4396	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
18.8941-6	chr11	63913629	63914128	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	19707	NM_014067	28992	Hs.602898	NM_014067	ENSG00000133315	MACROD1	LRP16	MACRO domain containing 1	protein-coding
16.9037-2	chrX	46819759	46820258	+	0	NA	intron (NM_014735, intron 1 of 10)	intron (NM_014735, intron 1 of 10)	48140	NM_014735	9767	Hs.371977	NM_014735	ENSG00000102221	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
13.9794	chr5	76337637	76338136	+	0	NA	intron (NM_018046, intron 5 of 13)	SVA_F|Other|Other	11676	NM_018046	55109	Hs.634849	NM_018046	ENSG00000164252	AGGF1	GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q	angiogenic factor with G-patch and FHA domains 1	protein-coding
14.9214	chr17	15859371	15859870	+	0	NA	intron (NM_000676, intron 1 of 1)	intron (NM_000676, intron 1 of 1)	11389	NM_000676	136	Hs.167046	NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
16.1261	chr1	223101468	223101967	+	0	NA	intron (NM_032890, intron 2 of 9)	intron (NM_032890, intron 2 of 9)	113286	NM_032890	84976	Hs.528817	NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
25.5129-2	chr3	143049939	143050438	+	0	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	-10900	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
14.9621-4	chr2	125238522	125239021	+	0	NA	intron (NM_130773, intron 7 of 23)	MLT1A0|LTR|ERVL-MaLR	455907	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
19.5468-5	chrX	71399337	71399836	+	0	NA	Intergenic	SVA_E|Other|Other	-1940	NM_006223	5303	Hs.655623	NM_006223	ENSG00000102309	PIN4	EPVH|PAR14|PAR17	peptidylprolyl cis/trans isomerase, NIMA-interacting 4	protein-coding
15.4821	chr2	31692216	31692715	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-54854	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
18.9963	chr3	147126794	147127293	+	0	NA	promoter-TSS (NM_003412)	promoter-TSS (NM_003412)	-138	NM_003412	7545	Hs.598590	NM_003412	ENSG00000152977	ZIC1	CRS6|ZIC|ZNF201	Zic family member 1	protein-coding
17.6447-7	chr20	24114791	24115290	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-65363	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
13.6957-3	chr5	81278382	81278881	+	0	NA	intron (NM_001131028, intron 2 of 8)	SVA_D|Other|Other	10787	NM_031482	83734	Hs.713698	NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
22.1753	chr12	62278961	62279460	+	0	NA	intron (NM_178539, intron 1 of 4)	intron (NM_178539, intron 1 of 4)	307410	NM_178539	338811	Hs.269745	NM_178539	ENSG00000198673	FAM19A2	TAFA-2|TAFA2	family with sequence similarity 19 member A2, C-C motif chemokine like	protein-coding
16.3827-4	chrX	68627552	68628051	+	0	NA	Intergenic	Intergenic	-97277	NM_015686	27112	Hs.87619	NM_015686	ENSG00000130054	FAM155B	CXorf63|TED|TMEM28|bB57D9.1	family with sequence similarity 155 member B	protein-coding
15.2143	chr2	185992915	185993414	+	0	NA	Intergenic	MER70A|LTR|ERVL	38635	NR_136319	105373782	Hs.128285	NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
23.1785	chr12	3333534	3334033	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	147262	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
15.157-3	chr8	21569182	21569681	+	0	NA	intron (NM_001495, intron 4 of 8)	SVA_D|Other|Other	76915	NM_001165038	2675	Hs.441202	NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
23.7059	chr4	172142309	172142808	+	0	NA	Intergenic	Intergenic	35223	NR_106730	102466953		NR_106730	ENSG00000278502	MIR6082	hsa-mir-6082	microRNA 6082	ncRNA
17.4958-12	chr7	114978767	114979266	+	0	NA	Intergenic	Intergenic	-107607	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
17.7728-6	chr3	128036510	128037009	+	0	NA	intron (NM_021937, intron 4 of 6)	L2b|LINE|L2	-145678	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
15.6067-3	chr7	32065281	32065780	+	0	NA	intron (NM_001322059, intron 3 of 17)	intron (NM_001322059, intron 3 of 17)	44944	NM_001191057	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
13.9577-6	chr19	15234625	15235124	+	0	NA	intron (NM_006844, intron 2 of 15)	intron (NM_006844, intron 2 of 15)	1736	NM_006844	10994	Hs.78880	NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|ILV2H	ilvB acetolactate synthase like	protein-coding
17.6447-3	chr2	140562933	140563432	+	0	NA	Intergenic	Intergenic	781072	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA
14.4733-2	chr1	111299038	111299537	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-81632	NM_002232	3738	Hs.169948	NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
17.4958-16	chr13	91744739	91745238	+	0	NA	Intergenic	LTR79|LTR|ERVL	-1295	NR_104057	101930747	Hs.112745	NR_104057		LINC00380	-	long intergenic non-protein coding RNA 380	ncRNA
26.6959-2	chr4	147399116	147399615	+	0	NA	intron (NM_001029998, intron 4 of 11)	intron (NM_001029998, intron 4 of 11)	43758	NM_001317818	84068	Hs.659209	NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7	solute carrier family 10 member 7	protein-coding
13.4969-2	chr9	38243121	38243620	+	0	NA	Intergenic	SVA_F|Other|Other	-149291	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
21.6241-2	chr6	126097500	126097999	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4558	NM_001199620	135112	Hs.171426	NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
15.3165	chr2	198323997	198324496	+	0	NA	intron (NM_001320820, intron 1 of 4)	intron (NM_001320820, intron 1 of 4)	5758	NM_001320820	80219	Hs.606592	NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
23.3068	chr14	56652654	56653153	+	0	NA	intron (NM_021255, intron 2 of 5)	MLT1E2|LTR|ERVL-MaLR	67810	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
16.6354-5	chr3	138504150	138504649	+	0	NA	Intergenic	SVA_B|Other|Other	-26198	NM_006219	5291	Hs.239818	NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
14.8017-3	chr12	110462366	110462865	+	0	NA	intron (NM_033121, intron 7 of 14)	Tigger14a|DNA|TcMar-Tigger	25380	NM_033121	88455	Hs.528703	NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
13.1426	chrX	10278456	10278955	+	0	NA	Intergenic	Intergenic	153720	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
17.3993	chr2	55346697	55347196	+	0	NA	intron (NM_001321904, intron 1 of 9)	intron (NM_001321904, intron 1 of 9)	18021	NM_001321904	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
18.3268	chr5	118655016	118655515	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-13605	NM_001286814	25816	Hs.618488	NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
14.9214-5	chr2	231708821	231709320	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-20243	NM_001287240	81618	Hs.111577	NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
31.6622-2	chr6	146368433	146368932	+	0	NA	intron (NM_001278067, intron 1 of 7)	UCON28a|Unknown|Unknown	18348	NM_001278067	2911	Hs.32945	NM_000838	ENSG00000152822	GRM1	GPRC1A|MGLU1|MGLUR1|PPP1R85|SCAR13	glutamate metabotropic receptor 1	protein-coding
15.9688	chr16	8229204	8229703	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	358375	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
15.7675	chr5	30495674	30496173	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	615256	NR_134264	105374704	Hs.151157	NR_134264		LOC105374704	-	uncharacterized LOC105374704	ncRNA
16.6555-5	chr9	115527021	115527520	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	14136	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
18.4164-3	chr15	99804981	99805480	+	0	NA	intron (NR_135759, intron 2 of 7)	L2a|LINE|L2	7500	NR_073383	7190	Hs.656611	NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
15.6384-6	chr12	4381603	4382102	+	0	NA	intron (NR_125790, intron 1 of 1)	CpG	-1050	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
13.2883-3	chr13	76703643	76704142	+	0	NA	Intergenic	Intergenic	252870	NR_126373	104326189	Hs.671216	NR_126373	ENSG00000223458	LMO7DN-IT1	C13orf45-IT1|TCONS_00021569	LMO7DN intronic transcript 1	ncRNA
14.0894	chr17	74444269	74444768	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	4770	NM_022066	63893	Hs.16130	NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
25.986	chr5	56737292	56737791	+	0	NA	Intergenic	Intergenic	41095	NM_001017992	345651	Hs.482167	NM_001017992	ENSG00000169067	ACTBL2	ACT	actin, beta like 2	protein-coding
21.3906	chr3	122384007	122384506	+	0	NA	Intergenic	MER67C|LTR|ERV1	-15416	NM_017554	54625	Hs.518203	NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
17.0774	chr5	55184068	55184567	+	0	NA	intron (NM_001242639, intron 6 of 15)	intron (NM_001242639, intron 6 of 15)	35167	NM_001242639	133396	Hs.55378	NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R	interleukin 31 receptor A	protein-coding
16.6154	chr2	20822840	20823339	+	0	NA	intron (NM_022460, intron 6 of 6)	MIRb|SINE|MIR	27775	NM_022460	64342	Hs.531785	NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
13.8828-4	chr14	19641255	19641754	+	0	NA	Intergenic	Intergenic	-8528	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
13.7366	chr20	31162685	31163184	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	9941	NM_001256798	140688	Hs.516978	NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4 like	protein-coding
21.1634-3	chr15	93796756	93797255	+	0	NA	Intergenic	Intergenic	-164562	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
13.7675-4	chr14	82148986	82149485	+	0	NA	Intergenic	MER68|LTR|ERVL	-59830	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
13.7263-3	chrX	12974203	12974702	+	0	NA	Intergenic	Intergenic	-13033	NR_030727	349408	Hs.685035	NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
14.2829-6	chr1	163620111	163620610	+	0	NA	Intergenic	Intergenic	-227379	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo
23.7059-9	chr7	18939778	18940277	+	0	NA	intron (NM_178425, intron 21 of 24)	intron (NM_178425, intron 21 of 24)	217268	NM_000474	7291	Hs.66744	NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
15.0724	chr9	37562805	37563304	+	0	NA	intron (NM_012166, intron 1 of 10)	THE1D|LTR|ERVL-MaLR	13196	NM_012166	26267	Hs.709527	NM_012166	ENSG00000147912	FBXO10	FBX10|PRMT11	F-box protein 10	protein-coding
23.7059-4	chr3	156666259	156666758	+	0	NA	intron (NM_001004316, intron 6 of 12)	L1PREC2|LINE|L1	122360	NM_001193283	389170	Hs.478048	NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
18.6967-2	chr6	11026425	11026924	+	0	NA	intron (NM_017770, intron 1 of 7)	intron (NM_017770, intron 1 of 7)	-17317	NR_038963	100506409	Hs.43818	NR_038962		ELOVL2-AS1	-	ELOVL2 antisense RNA 1	ncRNA
15.8004-5	chr3	145815141	145815640	+	0	NA	intron (NM_182943, intron 7 of 19)	SVA_E|Other|Other	63892	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
22.4642-2	chr17	29842124	29842623	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-19528	NR_039877	100616248		NR_039877	ENSG00000131242	MIR4724	mir-4724	microRNA 4724	ncRNA
14.7108-4	chr20	24362926	24363425	+	0	NA	Intergenic	Intergenic	-86660	NM_024893	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
14.023	chr15	29980831	29981330	+	0	NA	Intergenic	MIR|SINE|MIR	13941	NR_135221	100130111	Hs.525720	NR_135221	ENSG00000256802	LOC100130111	-	uncharacterized LOC100130111	ncRNA
17.6447-2	chr7	125808386	125808885	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	889603	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
14.1454	chr5	1586927	1587426	+	0	NA	intron (NR_003263, intron 3 of 6)	SVA_D|Other|Other	7470	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
13.9577-5	chr12	3223257	3223756	+	0	NA	intron (NM_006675, intron 2 of 8)	MER58B|DNA|hAT-Charlie	36985	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
17.5203	chr17	78246031	78246530	+	0	NA	intron (NM_001256071, intron 2 of 67)	MSTB2|LTR|ERVL-MaLR	11620	NM_001256071	57674	Hs.195642	NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
14.3063-2	chr2	179131052	179131551	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	-53670	NM_145739	114880	Hs.318775	NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
13.2331-2	chr14	30739803	30740302	+	0	NA	Intergenic	Intergenic	-288277	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
17.0333	chr10	67169502	67170001	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-161432	NR_120647	101928913	Hs.568857	NR_120647		LINC01515	-	long intergenic non-protein coding RNA 1515	ncRNA
26.2342	chr14	45457838	45458337	+	0	NA	intron (NM_015091, intron 1 of 18)	MLT1F1|LTR|ERVL-MaLR	26694	NM_015091	23116	Hs.371078	NM_015091	ENSG00000198718	FAM179B	KIAA0423	family with sequence similarity 179 member B	protein-coding
13.8091-2	chr1	161438847	161439346	+	0	NA	Intergenic	CpG	-36109	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
20.5948	chr11	126229445	126229944	+	0	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	3905	NM_006278	6484	Hs.591947	NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
40.0966	chr8	128836315	128836814	+	0	NA	intron (NR_003367, intron 1 of 8)	MIRb|SINE|MIR	28356	NR_031609	100302185		NR_031609	ENSG00000249859	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
13.5164	chr13	95146238	95146737	+	0	NA	intron (NM_001322183, intron 1 of 7)	intron (NM_001322183, intron 1 of 7)	-14551	NM_001922	1638	Hs.301865	NM_001922	ENSG00000080166	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
19.7062-8	chr7	29997488	29997987	+	0	NA	intron (NM_001145515, intron 1 of 6)	7SK|RNA|RNA	31688	NM_001145515	9805	Hs.520740	NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
13.4199-3	chr2	22045312	22045811	+	0	NA	Intergenic	Intergenic	-112037	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
14.9894-4	chr7	74031439	74031938	+	0	NA	Intergenic	Intergenic	-40303	NM_001280800	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
23.7059-7	chr1	244933792	244934291	+	0	NA	Intergenic	L2c|LINE|L2	-64567	NM_001312871	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20, cytochrome c oxidase assembly factor	protein-coding
13.7675-2	chr2	127799375	127799874	+	0	NA	Intergenic	Intergenic	40017	NM_001320634	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
13.8828-3	chr9	45872683	45873182	+	0	NA	Intergenic	L1PA13|LINE|L1	-244011	NR_103714	100289124	Hs.567050	NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
14.4733	chr22	37442966	37443465	+	0	NA	Intergenic	MIRb|SINE|MIR	-4561	NM_024681	79734	Hs.517597	NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
22.8483-3	chr16	49576149	49576648	+	0	NA	intron (NM_001330533, intron 3 of 5)	intron (NM_001330533, intron 3 of 5)	-23902	NR_144553	1596	Hs.684517	NR_144553		ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
15.0169	chr12	74628551	74629050	+	0	NA	intron (NR_038300, intron 3 of 6)	ERVL-B4-int|LTR|ERVL	57611	NR_038300	100507377	Hs.455715	NR_038300	ENSG00000251138	LOC100507377	-	uncharacterized LOC100507377	ncRNA
14.1794-2	chr19	40925177	40925676	+	0	NA	Intergenic	Intergenic	-6155	NM_181882	57716	Hs.205457	NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
28.0134	chr4	158634454	158634953	+	0	NA	Intergenic	Intergenic	141061	NR_026992	340017	Hs.428275	NR_026992	ENSG00000234111	LOC340017	-	uncharacterized LOC340017	ncRNA
13.7572-3	chr5	133164477	133164976	+	0	NA	Intergenic	Intergenic	-84642	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
14.4855-3	chr3	39521218	39521717	+	0	NA	intron (NR_103505, intron 1 of 6)	intron (NR_103505, intron 1 of 6)	12403	NR_103505	4336	Hs.121333	NM_182935	ENSG00000168314	MOBP	-	myelin-associated oligodendrocyte basic protein	protein-coding
13.8091-9	chr3	130587806	130588305	+	0	NA	intron (NM_001199182, intron 1 of 26)	SVA_E|Other|Other	18686	NM_001199181	27032	Hs.584884	NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
13.5164-2	chrX	16985940	16986439	+	0	NA	intron (NM_001080975, intron 1 of 17)	SVA_D|Other|Other	21375	NM_001080975	9185	Hs.186810	NM_004726	ENSG00000169891	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
24.828	chr9	111144507	111145006	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	473519	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
22.8233	chrX	147226054	147226553	+	0	NA	Intergenic	Intergenic	163454	NM_152578	158521	Hs.128580	NM_152578	ENSG00000176988	FMR1NB	CT37|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding
55.7349	chr3	119357589	119358088	+	0	NA	Intergenic	Intergenic	21599	NM_022135	64091	Hs.534383	NM_022135	ENSG00000121577	POPDC2	POP2	popeye domain containing 2	protein-coding
13.9362-4	chr2	46116100	46116599	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	237306	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
22.4642-3	chr8	62065984	62066483	+	0	NA	Intergenic	Intergenic	-134292	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
44.8545	chr6	148634569	148635068	+	0	NA	intron (NM_001346505, intron 1 of 19)	intron (NM_001346505, intron 1 of 19)	-28911	NM_001346506	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
21.2378	chr6	95663909	95664408	+	0	NA	Intergenic	Intergenic	361169	NR_047502	101927288	Hs.616643	NR_047502	ENSG00000261366	MANEA-AS1	-	MANEA antisense RNA 1 (head to head)	ncRNA
17.4958-8	chr14	106319219	106319718	+	0	NA	Intergenic	Intergenic	4876	NR_039730	100616135		NR_039730	ENSG00000264024	MIR4507	-	microRNA 4507	ncRNA
19.431-2	chr4	100244777	100245276	+	0	NA	Intergenic	Intergenic	-2427	NM_001286650	125	Hs.4	NM_000668	ENSG00000196616	ADH1B	ADH2|HEL-S-117	alcohol dehydrogenase 1B (class I), beta polypeptide	protein-coding
14.2366	chr3	174801901	174802400	+	0	NA	intron (NR_046390, intron 2 of 3)	MLT1H1|LTR|ERVL-MaLR	30882	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
17.7728-4	chr7	149576614	149577113	+	0	NA	non-coding (NR_110612, exon 5 of 5)	non-coding (NR_110612, exon 5 of 5)	-5912	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
14.7237	chr4	8280540	8281039	+	0	NA	intron (NM_053044, intron 1 of 8)	intron (NM_053044, intron 1 of 8)	9297	NM_001297559	94031	Hs.479119	NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
17.4473	chr17	21356738	21357237	+	0	NA	Intergenic	MER90a|LTR|ERV1	48539	NM_001194958	100134444	Hs.200629	NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium voltage-gated channel subfamily J member 18	protein-coding
17.1444-3	chrX	37968697	37969196	+	0	NA	intron (NM_001163335, intron 13 of 17)	intron (NM_001163335, intron 13 of 17)	76159	NM_001163334	94122	Hs.662334	NM_138780	ENSG00000147041	SYTL5	slp5	synaptotagmin like 5	protein-coding
19.7062-3	chr12	112276242	112276741	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3541	NM_003668	8550	Hs.333120	NM_003668	ENSG00000089022	MAPKAPK5	MAPKAP-K5|MK-5|MK5|PRAK	mitogen-activated protein kinase-activated protein kinase 5	protein-coding
14.034-2	chr12	1944943	1945442	+	0	NA	3' UTR (NM_001163925, exon 5 of 5)	3' UTR (NM_001163925, exon 5 of 5)	15759	NM_001039029	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
24.51	chr15	63612702	63613500	+	0	NA	TTS (NR_135511)	TTS (NR_135511)	43352	NM_031301	83464	Hs.511703	NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688	aph-1 homolog B, gamma-secretase subunit	protein-coding
15.8503	chr17	30606844	30607343	+	0	NA	intron (NM_138328, intron 2 of 8)	intron (NM_138328, intron 2 of 8)	13898	NM_001330181	162494	Hs.655027	NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
16.3451-5	chr14	92863388	92863887	+	0	NA	intron (NM_153646, intron 2 of 16)	intron (NM_153646, intron 2 of 16)	73485	NM_153646	123041	Hs.385530	NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
19.8716-3	chr13	98503502	98504001	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-102178	NM_002271	3843	Hs.712598	NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
13.3255-4	chr10	25162289	25162788	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	79035	NM_020200	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
48.4466	chr14	23184401	23184900	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-51081	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	OXA1L, mitochondrial inner membrane protein	protein-coding
14.4855-4	chr9	129774544	129775043	+	0	NA	intron (NM_001190728, intron 3 of 16)	intron (NM_001190728, intron 3 of 16)	50289	NM_001190728	9649	Hs.432842	NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
14.3652-3	chr6	158733851	158734350	+	0	NA	5' UTR (NM_020245, exon 1 of 14)	5' UTR (NM_020245, exon 1 of 14)	408	NM_001007466	56995	Hs.486993	NM_020245	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
28.5387	chr7	1854656	1855155	+	0	NA	TTS (NM_003550)	TTS (NM_003550)	28984	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
16.6756-2	chr2	5499437	5499936	+	0	NA	Intergenic	Intergenic	331564	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
28.1531	chr3	25519687	25520186	+	0	NA	intron (NM_001290217, intron 2 of 7)	MamRep137|DNA|TcMar?	20135	NM_001290217	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
13.279-7	chr1	44478860	44479359	+	0	NA	intron (NM_201649, intron 1 of 13)	intron (NM_201649, intron 1 of 13)	3903	NM_001261380	6536	Hs.442590	NM_006934	ENSG00000196517	SLC6A9	GLYT1	solute carrier family 6 member 9	protein-coding
14.2481	chr22	21643513	21644012	+	0	NA	intron (NR_024583, intron 3 of 6)	intron (NR_024583, intron 3 of 6)	6976	NR_136575	102724728	Hs.735161	NR_136575		LOC102724728	-	POM121 transmembrane nucleoporin pseudogene	pseudo
16.5758-2	chr14	87619001	87619500	+	0	NA	Intergenic	Intergenic	247128	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
15.6543	chr13	50695528	50696027	+	0	NA	intron (NR_109974, intron 2 of 6)	MLT1G3|LTR|ERVL-MaLR	3900	NR_002612	8847	Hs.547964	NR_002612	ENSG00000231607	DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	ncRNA
16.8403-4	chr5	154653597	154654096	+	0	NA	Intergenic	Intergenic	260531	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
13.1158	chr7	95865327	95865826	+	0	NA	intron (NM_014251, intron 3 of 17)	intron (NM_014251, intron 3 of 17)	-16508	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
18.2102-3	chr7	128395775	128396274	+	0	NA	intron (NM_001130674, intron 3 of 6)	intron (NM_001130674, intron 3 of 6)	16678	NM_001199673	813	Hs.7753	NM_001219	ENSG00000128595	CALU	-	calumenin	protein-coding
24.6471	chr1	241540169	241540668	+	0	NA	Intergenic	Intergenic	-19888	NM_002924	6000	Hs.655739	NM_002924	ENSG00000182901	RGS7	-	regulator of G-protein signaling 7	protein-coding
14.5717	chr17	73913163	73913662	+	0	NA	intron (NM_001319193, intron 22 of 28)	intron (NM_001319193, intron 22 of 28)	-12231	NM_032478	64978	Hs.442609	NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding
15.157-4	chr7	146067159	146067658	+	0	NA	intron (NM_014141, intron 1 of 23)	AluSz|SINE|Alu	253955	NM_014141	26047	Hs.655684	NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
13.8091	chr6	158100986	158101485	+	0	NA	Intergenic	Intergenic	-142968	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
26.3078-4	chr6	88589149	88589648	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	94820	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
17.2125-7	chr6	149132596	149133095	+	0	NA	intron (NM_005715, intron 1 of 7)	MLT1H1|LTR|ERVL-MaLR	64574	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
16.073-2	chr16	49708188	49708687	+	0	NA	intron (NM_001271620, intron 3 of 7)	MIR|SINE|MIR	-10295	NM_001330533	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
18.8941-5	chr20	41035335	41035834	+	0	NA	intron (NM_007050, intron 9 of 30)	MLT1K|LTR|ERVL-MaLR	-278539	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
30.7263	chr11	19759560	19760059	+	0	NA	intron (NM_182964, intron 1 of 37)	intron (NM_182964, intron 1 of 37)	21820	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
21.0127	chr20	24945778	24946277	+	0	NA	intron (NM_020531, intron 8 of 8)	L2|LINE|L2	16161	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
15.5752	chr1	6119965	6120464	+	0	NA	intron (NM_001199862, intron 2 of 15)	intron (NM_001199862, intron 2 of 15)	14040	NM_001199863	8514	Hs.440497	NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
13.8091-5	chr2	33651558	33652057	+	0	NA	Intergenic	Intergenic	8224	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
13.2975-4	chr5	80717924	80718423	+	0	NA	intron (NM_001345886, intron 15 of 15)	intron (NM_001345886, intron 15 of 15)	-28185	NM_130767	134526	Hs.591756	NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
21.261-2	chr17	60770996	60771495	+	0	NA	TTS (NM_006039)	TTS (NM_006039)	66483	NM_006039	9902	Hs.7835	NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C type 2	protein-coding
17.4958-4	chr5	123906202	123906701	+	0	NA	Intergenic	Intergenic	-132238	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
16.3451	chr1	78949267	78949766	+	0	NA	Intergenic	L1PA8A|LINE|L1	-7212	NM_001039585	5737	Hs.654365	NM_000959	ENSG00000122420	PTGFR	FP	prostaglandin F receptor	protein-coding
14.9621-7	chr20	48889169	48889668	+	0	NA	intron (NM_001278655, intron 1 of 3)	intron (NM_001278655, intron 1 of 3)	5395	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
14.8945-2	chr2	114393953	114394452	+	0	NA	intron (NM_007082, intron 5 of 9)	MLT1G3|LTR|ERVL-MaLR	8071	NM_001306160	11159	Hs.446425	NM_007082	ENSG00000144134	RABL2A	-	RAB, member of RAS oncogene family-like 2A	protein-coding
16.5365-2	chr10	117943722	117944221	+	0	NA	intron (NM_001145453, intron 4 of 9)	intron (NM_001145453, intron 4 of 9)	87848	NM_145793	2674	Hs.388347	NM_005264	ENSG00000151892	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
43.1069	chrX	152822077	152822576	+	0	NA	intron (NM_021949, intron 13 of 20)	intron (NM_021949, intron 13 of 20)	20746	NM_021949	492	Hs.533956	NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
24.3771	chr2	38318729	38319228	+	0	NA	Intergenic	MIR|SINE|MIR	-15655	NM_000104	1545	Hs.154654	NM_000104	ENSG00000138061	CYP1B1	CP1B|CYPIB1|GLC3A|P4501B1	cytochrome P450 family 1 subfamily B member 1	protein-coding
55.986	chr12	6948894	6949393	+	0	NA	promoter-TSS (NM_001297571)	promoter-TSS (NM_001297571)	-875	NM_001297571	2784	Hs.631657	NM_002075	ENSG00000111664	GNB3	CSNB1H	G protein subunit beta 3	protein-coding
40.6449	chr2	12825785	12826284	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-30964	NR_027303	28951	Hs.467751	NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
16.8403-3	chr9	82080039	82080538	+	0	NA	Intergenic	Intergenic	-106400	NM_001282749	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
15.4363	chr1	183852629	183853128	+	0	NA	intron (NM_001297670, intron 5 of 17)	intron (NM_001297670, intron 5 of 17)	78663	NM_001297672	23179	Hs.497148	NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
19.5468-7	chr2	177896121	177896620	+	0	NA	Intergenic	Intergenic	-181052	NM_194247	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
15.5596	chr5	14238353	14238852	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	94791	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
16.8825-6	chr6	157192523	157193022	+	0	NA	exon (NM_020732, exon 3 of 20)	exon (NM_020732, exon 3 of 20)	-91907	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
26.3078-3	chr1	64768434	64768933	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	99382	NM_152489	148581	Hs.388746	NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U (putative)	protein-coding
21.4448	chr13	91265613	91266112	+	0	NA	Intergenic	LTR18A|LTR|ERVL	120320	NR_120414	101927224	Hs.385801	NR_120414		LINC01049	-	long intergenic non-protein coding RNA 1049	ncRNA
13.6452-4	chr13	24024407	24024906	+	0	NA	Intergenic	Intergenic	-16789	NM_014363	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
67.167	chr13	77542349	77542848	+	0	NA	Intergenic	L1PA10|LINE|L1	15974	NM_001258406	730249	Hs.160789	NM_001258406	ENSG00000102794	ACOD1	CAD|IRG1	aconitate decarboxylase 1	protein-coding
14.4129-2	chr3	9014139	9014638	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-9229	NM_020165	56852	Hs.375684	NM_020165	ENSG00000070950	RAD18	RNF73	RAD18, E3 ubiquitin protein ligase	protein-coding
13.5952-2	chr9	81631672	81632171	+	0	NA	Intergenic	Intergenic	128660	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
23.7059-6	chr4	165923068	165923567	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-24499	NM_001012414	391712	Hs.654633	NM_001012414	ENSG00000183439	TRIM61	RNF35	tripartite motif containing 61	protein-coding
13.7263	chr2	234246016	234246515	+	0	NA	intron (NM_000541, intron 11 of 15)	intron (NM_000541, intron 11 of 15)	-16888	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
13.5458	chrX	10843332	10843831	+	0	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	8228	NM_033290	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
14.3297-2	chr9	37692643	37693142	+	0	NA	intron (NM_014907, intron 2 of 15)	intron (NM_014907, intron 2 of 15)	41840	NM_014907	22844	Hs.163990	NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding
13.83-5	chr5	21937951	21938450	+	0	NA	intron (NM_001317227, intron 3 of 11)	MER76|LTR|ERVL	53637	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
13.9577-7	chr14	21151725	21152560	+	0	NA	promoter-TSS (NM_001145)	promoter-TSS (NM_001145)	-194	NM_001145	283	Hs.283749	NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
24.5346-3	chr5	22652151	22652650	+	0	NA	intron (NM_004061, intron 1 of 14)	intron (NM_004061, intron 1 of 14)	201331	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
18.8941-3	chr5	145217394	145217893	+	0	NA	Intergenic	Intergenic	-2711	NM_138492	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
21.4086-2	chr1	201398669	201399168	+	0	NA	Intergenic	Intergenic	-8044	NM_003281	7135	Hs.320890	NM_003281	ENSG00000159173	TNNI1	SSTNI|TNN1	troponin I1, slow skeletal type	protein-coding
15.9517-4	chr5	169190230	169190729	+	0	NA	intron (NM_004946, intron 25 of 51)	intron (NM_004946, intron 25 of 51)	126228	NM_004946	1794	Hs.586174	NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
18.7943	chr1	160335043	160335542	+	0	NA	Intergenic	Intergenic	-1569	NM_005598	4807	Hs.30956	NM_005598	ENSG00000171786	NHLH1	HEN1|NSCL|NSCL1|bHLHa35	nescient helix-loop-helix 1	protein-coding
16.4016-4	chr7	37188574	37189073	+	0	NA	intron (NM_001206482, intron 13 of 21)	intron (NM_001206482, intron 13 of 21)	151422	NR_104120	100861514	Hs.627775	NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
31.261	chr3	172035802	172036301	+	0	NA	intron (NM_001135095, intron 11 of 25)	intron (NM_001135095, intron 11 of 25)	130195	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	GHDP	growth hormone secretagogue receptor	protein-coding
23.1158	chr6	160216189	160216688	+	0	NA	intron (NR_134861, intron 2 of 3)	LTR5_Hs|LTR|ERVK	-4843	NM_001271862	154197	Hs.349077	NM_173516	ENSG00000146453	PNLDC1	-	PARN like, ribonuclease domain containing 1	protein-coding
25.0031-2	chr3	175657967	175658466	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-164095	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
21.549-2	chr3	63761260	63761759	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-43532	NR_026866	132200	Hs.506386	NM_138808	ENSG00000163632	C3orf49	-	chromosome 3 open reading frame 49	ncRNA
30.7212	chr8	100836282	100836781	+	0	NA	intron (NM_152564, intron 51 of 61)	intron (NM_152564, intron 51 of 61)	69711	NM_004374	1345	Hs.351875	NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
18.1816	chr18	23317720	23318219	+	0	NA	Intergenic	Intergenic	352642	NM_005637	6760	Hs.129261	NM_005637	ENSG00000141380	SS18	SSXT|SYT	SS18, nBAF chromatin remodeling complex subunit	protein-coding
28.8273-5	chr17	70939864	70940363	+	0	NA	intron (NM_139177, intron 5 of 9)	LTR45B|LTR|ERV1	148740	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding
20.5453	chr6	22099406	22099905	+	0	NA	intron (NR_015410, intron 8 of 11)	intron (NR_015410, intron 8 of 11)	47767	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
15.2724	chr13	34519583	34520082	+	0	NA	intron (NM_181558, intron 8 of 8)	intron (NM_181558, intron 8 of 8)	127626	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
13.5952	chr22	41090427	41090926	+	0	NA	Intergenic	MIR|SINE|MIR	15494	NM_005297	2847	Hs.248122	NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
26.2709	chr2	3680660	3681159	+	0	NA	intron (NM_199235, intron 4 of 7)	intron (NM_199235, intron 4 of 7)	-24877	NM_018436	55821	Hs.97899	NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
14.698-2	chr8	136234019	136234518	+	0	NA	Intergenic	MIR|SINE|MIR	-12106	NR_120396	286094	Hs.440978	NR_026706	ENSG00000254083	LINC01591	-	long intergenic non-protein coding RNA 1591	ncRNA
17.0774-3	chr7	112982045	112982544	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-223657	NR_024412	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
33.9147	chr7	149648371	149648870	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-77669	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
14.0121-9	chr2	72240237	72240736	+	0	NA	Intergenic	Intergenic	134505	NM_001277742	56603	Hs.91546	NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
16.3451-2	chr12	117529814	117530313	+	0	NA	intron (NR_031766, intron 1 of 7)	intron (NR_031766, intron 1 of 7)	7188	NR_031766	54997	Hs.525709	NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
22.8483-4	chr5	109257824	109258323	+	0	NA	Intergenic	Intergenic	39190	NR_033175	100289673	Hs.368405	NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	pseudo
15.817-5	chr3	99991717	99992216	+	0	NA	intron (NM_001199198, intron 1 of 18)	LTR5_Hs|LTR|ERVK	12305	NM_018309	55773	Hs.477003	NM_018309	ENSG00000036054	TBC1D23	NS4ATP1	TBC1 domain family member 23	protein-coding
26.3078	chr5	112987797	112988296	+	0	NA	Intergenic	LTR38C|LTR|ERV1	138687	NM_001345976	64848	Hs.231942	NM_022828	ENSG00000047188	YTHDC2	CAHL	YTH domain containing 2	protein-coding
13.2331	chr14	68036344	68036843	+	0	NA	intron (NM_020715, intron 8 of 28)	intron (NM_020715, intron 8 of 28)	30424	NM_004569	5283	Hs.553497	NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
19.1364	chrX	42323421	42323920	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	313816	NR_002191	80316	Hs.127689	NM_025210	ENSG00000102055	PPP1R2P9	I-4	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 9	pseudo
37.5449	chr5	142399607	142400106	+	0	NA	intron (NM_015071, intron 12 of 22)	intron (NM_015071, intron 12 of 22)	-151381	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
22.4642	chr1	240156543	240157042	+	0	NA	Intergenic	Intergenic	-14032	NR_036695	645884	Hs.613280	NR_036695		RPS7P5	RPS7_2_183	ribosomal protein S7 pseudogene 5	pseudo
40.8513	chr5	19001540	19002039	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	884592	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
17.6447-6	chr4	152446880	152447379	+	0	NA	intron (NM_001109977, intron 3 of 13)	SVA_D|Other|Other	116731	NM_001109977	729830	Hs.633810	NM_001109977	ENSG00000164142	FAM160A1	-	family with sequence similarity 160 member A1	protein-coding
15.9176-2	chr3	34263092	34263591	+	0	NA	Intergenic	Intergenic	423278	NM_001256192	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
16.6354-2	chr13	91809435	91809934	+	0	NA	intron (NR_047004, intron 2 of 3)	intron (NR_047004, intron 2 of 3)	54268	NR_047004	100874150	Hs.711947	NR_047004		LINC00379	-	long intergenic non-protein coding RNA 379	ncRNA
14.0121-7	chr17	77680068	77680567	+	0	NA	promoter-TSS (NR_109783)	promoter-TSS (NR_109783)	741	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA
17.4715-2	chr2	22242963	22243462	+	0	NA	Intergenic	Intergenic	-309688	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
24.6852	chr5	89894152	89894651	+	0	NA	intron (NR_003149, intron 1 of 89)	intron (NR_003149, intron 1 of 89)	39784	NR_003149	84059	Hs.591777	NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
19.6658-4	chr7	107714713	107715212	+	0	NA	intron (NM_007356, intron 17 of 33)	AluSz6|SINE|Alu	55839	NM_001318048	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
21.3668-2	chr3	139883809	139884308	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	230031	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
13.6251-2	chr11	20325110	20325609	+	0	NA	Intergenic	Intergenic	-59872	NM_006410	10553	Hs.90753	NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
13.9254-2	chr3	88353013	88353512	+	0	NA	Intergenic	SVA_A|Other|Other	-154246	NM_001195308	8545	Hs.444818	NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
22.6043	chr17	69781405	69781904	+	0	NA	Intergenic	Intergenic	240466	NR_110876	102723505	Hs.547482	NR_110876	ENSG00000228639	LINC02095	-	long intergenic non-protein coding RNA 2095	ncRNA
27.8516	chr7	92111015	92111514	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	34502	NM_021167	57798	Hs.21145	NM_021167	ENSG00000157259	GATAD1	CMD2B|ODAG|RG083M05.2	GATA zinc finger domain containing 1	protein-coding
23.0277-2	chr12	130947677	130948176	+	0	NA	intron (NM_015347, intron 3 of 18)	intron (NM_015347, intron 3 of 18)	54484	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
29.8716	chr2	127455905	127456404	+	0	NA	Intergenic	Intergenic	42643	NM_001256584	2995	Hs.59138	NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
32.7165	chr2	227568166	227568665	+	0	NA	Intergenic	Intergenic	-44906	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
14.2022-5	chr6	136163567	136164066	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-9018	NM_018945	27115	Hs.744230	NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
25.157	chr7	79451833	79452332	+	0	NA	Intergenic	Intergenic	-312058	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
14.6092-2	chr14	32345867	32346366	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	162341	NM_001201574	80224	Hs.288981	NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|huInd1	nucleotide binding protein like	protein-coding
14.9894-2	chr20	7936819	7937318	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-15975	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
17.1444	chr7	131501129	131501628	+	0	NA	Intergenic	Intergenic	-93601	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
23.9041	chr5	164787714	164788213	+	0	NA	Intergenic	Intergenic	890678	NR_105065	102546299	Hs.437730	NR_105065	ENSG00000241956	LOC102546299	-	uncharacterized LOC102546299	ncRNA
33.8195	chr12	84070619	84071118	+	0	NA	Intergenic	Intergenic	989934	NM_001320322	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
26.5365-5	chr10	118163307	118163806	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-23868	NM_001011709	119548	Hs.276724	NM_001011709	ENSG00000203837	PNLIPRP3	-	pancreatic lipase related protein 3	protein-coding
14.7108-7	chr17	55859455	55859954	+	0	NA	Intergenic	Intergenic	-37014	NM_001282544	101927581	Hs.540784	NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
18.9279-2	chr12	117407615	117408114	+	0	NA	intron (NM_153348, intron 5 of 10)	intron (NM_153348, intron 5 of 10)	17278	NR_103809	100506551	Hs.657861	NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
14.0121-2	chr12	43492115	43492614	+	0	NA	Intergenic	Intergenic	406346	NR_135028	105369739	Hs.126660	NR_135028	ENSG00000257114	LOC105369739	-	uncharacterized LOC105369739	ncRNA
15.391	chr3	59754788	59755287	+	0	NA	intron (NM_002012, intron 8 of 9)	intron (NM_002012, intron 8 of 9)	311816	NM_001320901	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
16.073	chr3	54012032	54012531	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-86239	NM_021237	58515	Hs.58471	NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
14.1341-2	chr4	44170130	44170629	+	0	NA	Intergenic	SVA_B|Other|Other	151300	NR_131958	100506827	Hs.156197	NR_131958	ENSG00000251350	LVCAT1	-	liver cancer-associated transcript 1	ncRNA
27.3755	chr5	127138855	127139354	+	0	NA	intron (NM_001317938, intron 5 of 6)	intron (NM_001317938, intron 5 of 6)	100023	NM_001317938	728586	Hs.582532	NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
17.2125-9	chr2	11655808	11656307	+	0	NA	Intergenic	Intergenic	-18185	NM_014668	9687	Hs.467733	NM_014668	ENSG00000196208	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
17.7728	chr2	187686946	187687445	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	26702	NM_182521	151112	Hs.375054	NM_182521	ENSG00000163012	ZSWIM2	MEX|ZZZ2	zinc finger SWIM-type containing 2	protein-coding
14.7108-9	chr5	79394747	79395246	+	0	NA	Intergenic	Intergenic	-15508	NR_109930	101929215		NR_109930	ENSG00000249825	CTD-2201I18.1	-	uncharacterized LOC101929215	ncRNA
15.7512	chr11	20500485	20500984	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	91658	NM_001145166	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
18.041-3	chr11	119905892	119906391	+	0	NA	Intergenic	Intergenic	93480	NM_001330382	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
14.5593	chr11	95069096	95069595	+	0	NA	Intergenic	LTR72|LTR|ERV1	-103640	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
16.7366-2	chrX	76651635	76652134	+	0	NA	Intergenic	Intergenic	-57763	NM_003868	8823	Hs.666364	NM_003868	ENSG00000196468	FGF16	FGF-16|MF4	fibroblast growth factor 16	protein-coding
31.8111	chr2	108145338	108146097	+	0	NA	Intergenic	LTR9|LTR|ERV1	-179736	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
18.4771	chr4	159248610	159249109	+	0	NA	Intergenic	LTR9|LTR|ERV1	117458	NM_018342	55314	Hs.176227	NM_018342	ENSG00000164124	TMEM144	-	transmembrane protein 144	protein-coding
27.1897-3	chr13	92601137	92601636	+	0	NA	intron (NM_004466, intron 6 of 7)	intron (NM_004466, intron 6 of 7)	403074	NR_120382	100873970	Hs.567269	NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
14.0121	chr5	37938126	37938625	+	0	NA	Intergenic	Intergenic	-10218	NR_134262	105374729	Hs.150642	NR_134262	ENSG00000251518	LINC02110	-	long intergenic non-protein coding RNA 2110	ncRNA
29.431	chr1	108496142	108497087	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-10451	NR_046653	100873946	Hs.568676	NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
51.4146	chr5	45643030	45643529	+	0	NA	intron (NM_021072, intron 2 of 7)	intron (NM_021072, intron 2 of 7)	52941	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
14.9214-4	chr5	168203087	168203586	+	0	NA	intron (NM_003062, intron 12 of 35)	intron (NM_003062, intron 12 of 35)	-8076	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
21.0902	chr17	71585021	71585520	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	54957	NM_001144952	54549	Hs.435719	NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
15.1286-5	chr7	104388293	104388792	+	0	NA	intron (NM_199000, intron 2 of 2)	LTR5_Hs|LTR|ERVK	55997	NR_034142	645591	Hs.658835	NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
18.041-2	chr7	135034653	135035152	+	0	NA	Intergenic	L2a|LINE|L2	118171	NM_182489	346673	Hs.592279	NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
16.4782	chr6	157010372	157010871	+	0	NA	Intergenic	MIR|SINE|MIR	-88368	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
20.3858	chr17	78419443	78419942	+	0	NA	Intergenic	Intergenic	26474	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
14.2022-6	chr8	98883632	98884131	+	0	NA	intron (NM_002380, intron 1 of 18)	intron (NM_002380, intron 1 of 18)	2632	NM_001317748	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
14.51-2	chr17	71589562	71590061	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	50416	NM_001144952	54549	Hs.435719	NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
20.7572-2	chr13	74926365	74926864	+	0	NA	Intergenic	L1PA8|LINE|L1	66638	NR_144452	100288208	Hs.532467	NM_001013669		LOC100288208	-	uncharacterized LOC100288208	ncRNA
19.1009-5	chr1	236081298	236081797	+	0	NA	Intergenic	Intergenic	-34539	NM_001301365	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
16.4016-5	chr7	7538345	7538844	+	0	NA	intron (NM_001037763, intron 11 of 34)	intron (NM_001037763, intron 11 of 34)	36866	NM_001037763	340267	Hs.491104	NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
18.4466	chr12	101632062	101632561	+	0	NA	Intergenic	L1ME3A|LINE|L1	-28295	NM_145913	160728	Hs.444536	NM_145913	ENSG00000256870	SLC5A8	AIT|SMCT|SMCT1	solute carrier family 5 member 8	protein-coding
19.5468-6	chr2	46566746	46567551	+	0	NA	intron (NM_001430, intron 1 of 15)	MLT1A0|LTR|ERVL-MaLR	42607	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
17.2125	chr18	54424139	54424638	+	0	NA	exon (NM_015285, exon 15 of 28)	exon (NM_015285, exon 15 of 28)	105772	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
15.817-6	chr20	33742395	33742894	+	0	NA	Intergenic	SVA_F|Other|Other	-7483	NM_018217	55741	Hs.720177	NM_018217	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancing alpha-mannosidase like protein 2	protein-coding
14.8017-2	chr3	29805503	29806002	+	0	NA	intron (NM_001003793, intron 6 of 14)	intron (NM_001003793, intron 6 of 14)	169895	NR_046556	100873977	Hs.581453	NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
16.0206-2	chr12	120801230	120801729	+	0	NA	intron (NM_002442, intron 5 of 14)	intron (NM_002442, intron 5 of 14)	5504	NM_002442	4440	Hs.158311	NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
15.6543-3	chr5	63392566	63393065	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-68855	NM_178532	285671	Hs.657843	NM_178532	ENSG00000164197	RNF180	RINES	ring finger protein 180	protein-coding
13.9577	chr19	19391310	19391809	+	0	NA	intron (NM_172231, intron 8 of 13)	intron (NM_172231, intron 8 of 13)	-7485	NM_001001524	53345	Hs.531624	NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
20.5799	chr7	146679378	146679877	+	0	NA	intron (NM_014141, intron 3 of 23)	intron (NM_014141, intron 3 of 23)	115074	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
13.4679-2	chr11	61422979	61423478	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-24677	NM_006133	747	Hs.241564	NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR	diacylglycerol lipase alpha	protein-coding
13.3536	chr4	140977417	140977916	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	97567	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
19.1009-4	chr13	46945531	46946030	+	0	NA	intron (NM_001286766, intron 1 of 12)	intron (NM_001286766, intron 1 of 12)	15855	NM_001286764	80183	Hs.98117	NM_025113	ENSG00000102445	RUBCNL	C13orf18|KIAA0226L	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding
14.8678	chr12	113454536	113455035	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	38511	NM_002535	4939	Hs.414332	NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
19.3181-2	chr12	42027838	42028337	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-129904	NR_135041	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA
16.3451-6	chr7	13757264	13757763	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	268626	NM_001163151	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
26.5365-7	chr5	15932111	15932610	+	0	NA	intron (NM_001278317, intron 3 of 3)	MIR|SINE|MIR	-2931	NR_030616	100126347		NR_030616	ENSG00000216077	MIR887	MIRN887|hsa-mir-887	microRNA 887	ncRNA
14.4855-5	chr17	26832489	26832988	+	0	NA	Intergenic	Intergenic	-18221	NM_003593	8456	Hs.58611	NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|WHN	forkhead box N1	protein-coding
26.968	chr15	94010477	94010976	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-378283	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
22.8904-2	chr8	57532079	57532578	+	0	NA	Intergenic	Intergenic	-59946	NR_038236	100507632	Hs.583755	NR_038236	ENSG00000246430	LINC00968	-	long intergenic non-protein coding RNA 968	ncRNA
21.7653-3	chr12	81085763	81086262	+	0	NA	Intergenic	Intergenic	-15396	NM_002469	4618	Hs.35937	NM_002469	ENSG00000111046	MYF6	CNM3|MRF4|bHLHc4|myf-6	myogenic factor 6	protein-coding
15.7025-6	chr2	120140846	120141345	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	15844	NM_001079863	1622	Hs.78888	NM_020548	ENSG00000155368	DBI	ACBD1|ACBP|CCK-RP|EP	diazepam binding inhibitor, acyl-CoA binding protein	protein-coding
19.5468-2	chr17	55595954	55596453	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	4755	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
13.439-4	chr12	90654986	90655485	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-31860	NR_135018	105369893	Hs.577777	NR_135018		LOC105369893	-	uncharacterized LOC105369893	ncRNA
14.0121-8	chr17	38752786	38753285	+	0	NA	Intergenic	Intergenic	-31299	NM_001838	1236	Hs.370036	NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
13.7263-4	chrX	40605654	40606153	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-11099	NM_004229	9282	Hs.407604	NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
19.5861-2	chr7	105784395	105784894	+	0	NA	Intergenic	Intergenic	-31551	NM_006754	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
17.8781-2	chr3	77525646	77526145	+	0	NA	intron (NM_001128929, intron 1 of 24)	intron (NM_001128929, intron 1 of 24)	378732	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding
13.439-2	chr17	55951820	55952319	+	0	NA	intron (NM_001292025, intron 3 of 10)	intron (NM_001292025, intron 3 of 10)	-24636	NM_016070	51649	Hs.5836	NM_016070	ENSG00000181610	MRPS23	CGI-138|HSPC329|MRP-S23	mitochondrial ribosomal protein S23	protein-coding
19.7062-7	chr5	116156852	116157351	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-59196	NR_104678	102467223	Hs.570916	NR_104678		LOC102467223	-	uncharacterized LOC102467223	ncRNA
22.1968-4	chr8	59697056	59697555	+	0	NA	Intergenic	Intergenic	-124901	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
14.7108-3	chr3	12801794	12802293	+	0	NA	intron (NM_001284406, intron 1 of 11)	L2a|LINE|L2	-1235	NM_018306	55287	Hs.475502	NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
16.3451-9	chr8	58038060	58038559	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-92526	NR_038235	100507651	Hs.371831	NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
18.962-2	chr20	23901456	23901955	+	0	NA	Intergenic	Intergenic	-41325	NM_001900	1473	Hs.121489	NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
13.3255-6	chr5	97700779	97701278	+	0	NA	Intergenic	Intergenic	-403971	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule family member b	protein-coding
19.0658-3	chr11	117547146	117547645	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	120581	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
20.11	chr2	219271831	219272330	+	0	NA	Intergenic	L2c|LINE|L2	4711	NR_029500	407017		NR_029500	ENSG00000199121	MIR26B	MIRN26B|hsa-mir-26b|miR-26b	microRNA 26b	ncRNA
19.2812-7	chr2	182508084	182508583	+	0	NA	intron (NM_001030311, intron 1 of 13)	intron (NM_001030311, intron 1 of 13)	13501	NR_027689	375298	Hs.732358	NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
13.3724-5	chr20	5008828	5009327	+	0	NA	Intergenic	SVA_F|Other|Other	-18138	NM_203327	9962	Hs.516866	NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2|hSVCT2	solute carrier family 23 member 2	protein-coding
23.7059-2	chr6	157466721	157467220	+	0	NA	intron (NM_020732, intron 8 of 19)	MIR|SINE|MIR	278321	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
28.4164	chr6	82778401	82778900	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	178821	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
21.1634-2	chr7	69818471	69818970	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	754815	NM_001127232	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
37.5696	chr5	31944727	31945226	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	-8711	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
16.4782-4	chr14	89852390	89852889	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	30815	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
36.8825	chr13	47143432	47143931	+	0	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	16385	NM_001164211	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
16.1798-5	chr1	108770331	108770830	+	0	NA	intron (NM_001143989, intron 13 of 14)	intron (NM_001143989, intron 13 of 14)	16123	NM_001143989	148545	Hs.511849	NM_152488	ENSG00000196427	NBPF4	-	neuroblastoma breakpoint family member 4	protein-coding
22.8904	chr10	48562229	48562728	+	0	NA	Intergenic	Intergenic	-123340	NM_004962	2662	Hs.2171	NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
17.7989	chr9	18122071	18122570	+	0	NA	Intergenic	Intergenic	-351759	NM_001040272	92949	Hs.741483	NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
19.7469-2	chr17	67463289	67463788	+	0	NA	intron (NM_002758, intron 1 of 11)	intron (NM_002758, intron 1 of 11)	-34825	NM_001330450	5608	Hs.49329	NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
37.9317	chr8	62544271	62544770	+	0	NA	intron (NM_001164752, intron 13 of 13)	7SK|RNA|RNA	57888	NM_001164751	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
15.0724-2	chr4	34465843	34466342	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-424577	NR_125902	101928622	Hs.631687	NR_125902	ENSG00000250954	LOC101928622	-	uncharacterized LOC101928622	ncRNA
17.6955	chr17	48153791	48154290	+	0	NA	exon (NM_002204, exon 14 of 26)	exon (NM_002204, exon 14 of 26)	-18061	NM_001199898	5164	Hs.256667	NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
14.9894	chr3	167151498	167151997	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	40173	NM_006217	5276	Hs.445555	NM_006217	ENSG00000114204	SERPINI2	MEPI|PANCPIN|PI14|TSA2004	serpin family I member 2	protein-coding
17.5945	chr3	5280173	5280672	+	0	NA	Intergenic	Intergenic	11518	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
16.6354-6	chr15	36399000	36399499	+	0	NA	Intergenic	Intergenic	180192	NR_039735	100616293		NR_039735	ENSG00000265098	MIR4510	mir-4510	microRNA 4510	ncRNA
14.2829	chr12	125683179	125683678	+	0	NA	Intergenic	Intergenic	-127734	NM_052907	114795	Hs.524838	NM_052907	ENSG00000139364	TMEM132B	-	transmembrane protein 132B	protein-coding
22.9843	chr9	34149844	34150343	+	0	NA	Intergenic	Intergenic	-23322	NM_015397	25853	Hs.493750	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
14.168	chr5	98341117	98341616	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	76528	NR_036530	100289230	Hs.552095	NR_036530		LOC100289230	-	uncharacterized LOC100289230	ncRNA
25.9176	chr5	112567897	112568749	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	62289	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
22.5414	chr17	79049981	79050480	+	0	NA	intron (NM_017451, intron 3 of 14)	intron (NM_017451, intron 3 of 14)	41283	NM_017450	10458	Hs.128316	NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1 associated protein 2	protein-coding
16.216-2	chr11	60278134	60278633	+	0	NA	Intergenic	SVA_B|Other|Other	-4503	NM_001100909	503497	Hs.523704	NM_001012417	ENSG00000204979	MS4A13	-	membrane spanning 4-domains A13	protein-coding
17.7469	chr20	24851969	24852468	+	0	NA	Intergenic	Intergenic	-77648	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
19.914	chr14	23466332	23466831	+	0	NA	intron (NM_021944, intron 2 of 6)	intron (NM_021944, intron 2 of 6)	3665	NM_001282969	60686	Hs.255874	NM_021944	ENSG00000100802	C14orf93	-	chromosome 14 open reading frame 93	protein-coding
19.0309-4	chr14	73213027	73213526	+	0	NA	intron (NM_012074, intron 3 of 9)	intron (NM_012074, intron 3 of 9)	146081	NM_001280544	8110	Hs.162868	NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4	double PHD fingers 3	protein-coding
28.6967	chr6	155334545	155335044	+	0	NA	Intergenic	Intergenic	-76629	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
14.9894-3	chr20	3169881	3170380	+	0	NA	TTS (NM_023935)	TTS (NM_023935)	15213	NM_023935	65992	Hs.471975	NM_023935	ENSG00000198171	DDRGK1	C20orf116|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
19.1009	chr7	127734632	127735131	+	0	NA	Intergenic	Intergenic	12968	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
13.3255-3	chr2	7098934	7099433	+	0	NA	intron (NM_014746, intron 2 of 8)	intron (NM_014746, intron 2 of 8)	-40370	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	ncRNA
13.9577-4	chrX	133852306	133852805	+	0	NA	intron (NM_001316888, intron 1 of 2)	intron (NM_001316888, intron 1 of 2)	15111	NM_001316888	10761	Hs.496811	NM_021796	ENSG00000170965	PLAC1	CT92|OOSP2L	placenta specific 1	protein-coding
41.6052	chr12	128207808	128208307	+	0	NA	Intergenic	Intergenic	-67924	NR_134995	105370068	Hs.524845	NR_134995		LOC105370068	-	uncharacterized LOC105370068	ncRNA
27.4958	chr5	132633021	132633520	+	0	NA	intron (NM_015082, intron 6 of 15)	MIR|SINE|MIR	130128	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
16.9465	chr3	69482943	69483442	+	0	NA	Intergenic	MIR3|SINE|MIR	-47737	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
13.0277-3	chr19	21750784	21751283	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	62679	NR_144523	353088	Hs.572567	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
15.2143-3	chr9	107581988	107582487	+	0	NA	exon (NM_005502, exon 21 of 50)	exon (NM_005502, exon 21 of 50)	56215	NR_130760	55335	Hs.429294	NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
23.1158-3	chr13	44942026	44942525	+	0	NA	Intergenic	X6B_LINE|LINE|CR1	-5511	NM_001346980	387923	Hs.377972	NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
21.9179	chr1	203610105	203610604	+	0	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	14439	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
13.8616	chr1	170697072	170697571	+	0	NA	intron (NM_022716, intron 3 of 3)	intron (NM_022716, intron 3 of 3)	64008	NM_022716	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
14.7886	chr14	23194382	23194881	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-41100	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	OXA1L, mitochondrial inner membrane protein	protein-coding
15.1999	chr1	1345151	1345650	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2707	NM_017971	55052	Hs.182698	NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20	mitochondrial ribosomal protein L20	protein-coding
15.7025	chr7	83081460	83081959	+	0	NA	intron (NM_001178129, intron 4 of 16)	intron (NM_001178129, intron 4 of 16)	189038	NM_001178129	9723	Hs.528721	NM_012431	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	semaphorin 3E	protein-coding
26.5956	chr13	39675410	39675909	+	0	NA	Intergenic	Intergenic	63211	NM_001017370	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
20	chr17	63546866	63547365	+	0	NA	intron (NM_004655, intron 2 of 10)	MIR|SINE|MIR	10625	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
13.4008	chrX	68340329	68340828	+	0	NA	Intergenic	Intergenic	44787	NM_022368	64219	Hs.522679	NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
26.2342-2	chr20	4201932	4202431	+	0	NA	exon (NM_000678, exon 2 of 2)	exon (NM_000678, exon 2 of 2)	27478	NM_000678	146	Hs.557	NM_000678	ENSG00000171873	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
16.6959-2	chr3	144870608	144871107	+	0	NA	Intergenic	Intergenic	1008425	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
15.0307-2	chr21	46257442	46257941	+	0	NA	Intergenic	Intergenic	-19647	NM_001286416	6612	Hs.474005	NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin-like modifier 3	protein-coding
15.4061-2	chr5	43631366	43631865	+	0	NA	intron (NM_001331026, intron 6 of 20)	intron (NM_001331026, intron 6 of 20)	-28283	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
14.4977-2	chr16	74864460	74864959	+	0	NA	Intergenic	Intergenic	-55980	NM_024306	79152	Hs.461329	NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
16.6555-2	chr7	98865816	98866315	+	0	NA	Intergenic	Intergenic	-4859	NR_002147	84176	Hs.621401	NR_002147		MYH16	MHC20|MYH16P|MYH5	myosin heavy chain 16 pseudogene	pseudo
13.4104-3	chr17	30152982	30153481	+	0	NA	Intergenic	Intergenic	32862	NM_001330176	55352	Hs.462729	NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
19.7062-12	chr1	241610458	241610957	+	0	NA	Intergenic	Intergenic	72378	NM_000143	2271	Hs.592490	NM_000143	ENSG00000091483	FH	FMRD|HLRCC|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
18.9279	chr11	20570685	20571184	+	0	NA	Intergenic	SVA_E|Other|Other	-50012	NM_004211	9152	Hs.136557	NM_004211	ENSG00000165970	SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 member 5	protein-coding
20.0174-2	chr15	102040106	102040605	+	0	NA	Intergenic	Intergenic	-10168	NM_002570	5046	Hs.498494	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
22.4642-4	chr5	10509271	10509770	+	0	NA	promoter-TSS (NR_134290)	promoter-TSS (NR_134290)	-214	NR_134290	389273	Hs.519206	NR_134289	ENSG00000249160	LOC389273	-	uncharacterized LOC389273	ncRNA
19.1009-10	chr4	165916811	165917310	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-18242	NM_001012414	391712	Hs.654633	NM_001012414	ENSG00000183439	TRIM61	RNF35	tripartite motif containing 61	protein-coding
13.9686	chr7	17762192	17762691	+	0	NA	Intergenic	Intergenic	-163908	NR_110013	101927630	Hs.583400	NR_110013	ENSG00000236039	LOC101927630	-	uncharacterized LOC101927630	ncRNA
18.2102-6	chr7	69819300	69819799	+	0	NA	intron (NM_015570, intron 4 of 18)	MIR|SINE|MIR	755644	NM_001127232	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
14.1117-3	chr3	81514979	81515478	+	0	NA	Intergenic	Intergenic	295722	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding
18.2102-5	chr5	170187065	170187564	+	0	NA	Intergenic	Intergenic	-23409	NM_014211	2568	Hs.26225	NM_014211	ENSG00000094755	GABRP	-	gamma-aminobutyric acid type A receptor pi subunit	protein-coding
29.914	chr3	191999216	191999715	+	0	NA	intron (NR_046596, intron 3 of 4)	intron (NR_046596, intron 3 of 4)	43046	NR_046596	100873986	Hs.581652	NR_046596	ENSG00000231383	FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
17.7728-3	chr13	108330963	108331462	+	0	NA	intron (NM_001080396, intron 1 of 2)	THE1C|LTR|ERVL-MaLR	-147616	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
14.9621-6	chr8	137630539	137631038	+	0	NA	Intergenic	Intergenic	795043	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19.1721-2	chr10	122786828	122787327	+	0	NA	Intergenic	Intergenic	-176386	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
15.5284-3	chr16	56514618	56515117	+	0	NA	Intergenic	Intergenic	28871	NM_001324358	55239	Hs.231883	NM_018233	ENSG00000087263	OGFOD1	TPA1	2-oxoglutarate and iron dependent oxygenase domain containing 1	protein-coding
22.9073	chr14	96231346	96231845	+	0	NA	Intergenic	Intergenic	-51062	NM_001098725	8115	Hs.2484	NM_021966	ENSG00000100721	TCL1A	TCL1	T-cell leukemia/lymphoma 1A	protein-coding
20.0745	chr9	123012212	123012711	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-5133	NR_029604	406939		NR_029604	ENSG00000207814	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
15.5909-2	chr5	10519560	10520059	+	0	NA	intron (NR_134289, intron 1 of 2)	intron (NR_134289, intron 1 of 2)	2387	NR_134289	389273	Hs.519206	NR_134289	ENSG00000249160	LOC389273	-	uncharacterized LOC389273	ncRNA
32.9073	chr12	7638997	7639496	+	0	NA	exon (NM_004244, exon 10 of 17)	exon (NM_004244, exon 10 of 17)	17168	NM_203416	9332	Hs.504641	NM_004244	ENSG00000177575	CD163	M130|MM130|SCARI1	CD163 molecule	protein-coding
58.1248-2	chr7	135402339	135402838	+	0	NA	intron (NM_012450, intron 2 of 15)	MLT2B1|LTR|ERVL	10364	NM_001318192	26266	Hs.490241	NM_012450	ENSG00000164707	SLC13A4	NAS2|SUT-1|SUT1	solute carrier family 13 member 4	protein-coding
14.3771-3	chr3	51656814	51657313	+	0	NA	intron (NM_001322257, intron 2 of 21)	intron (NM_001322257, intron 2 of 21)	-48128	NM_001278195	51368	Hs.517864	NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264	protein-coding
23.0364	chr3	170246419	170246918	+	0	NA	intron (NM_020949, intron 1 of 7)	intron (NM_020949, intron 1 of 7)	57195	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding
19.6658-5	chr9	134917128	134917627	+	0	NA	intron (NM_004269, intron 2 of 7)	intron (NM_004269, intron 2 of 7)	37897	NM_004269	9442	Hs.374262	NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|TRAP37	mediator complex subunit 27	protein-coding
17.6955-3	chr2	195755404	195755903	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	160334	NR_110223	101927431	Hs.558215	NR_110223	ENSG00000230173	LINC01790	-	long intergenic non-protein coding RNA 1790	ncRNA
14.1908-2	chr12	16225264	16225763	+	0	NA	Intergenic	Intergenic	161407	NM_015954	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
13.0452-3	chr10	28606613	28607112	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-14867	NR_134518	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	membrane palmitoylated protein 7	protein-coding
26.0033	chr8	134737332	134737831	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-41272	NR_134462	105375773	Hs.445172	NR_134462		LOC105375773	-	uncharacterized LOC105375773	ncRNA
16.4589	chr5	75844298	75844797	+	0	NA	intron (NM_001285460, intron 1 of 34)	MIR|SINE|MIR	1313	NM_001285460	10788	Hs.291030	NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19.2082-3	chr2	104474567	104475066	+	0	NA	Intergenic	Intergenic	549974	NR_037885	100287010	Hs.694603	NR_037885		LOC100287010	-	uncharacterized LOC100287010	ncRNA
14.0121-3	chr20	31999004	31999503	+	0	NA	intron (NM_003098, intron 5 of 7)	L2c|LINE|L2	-9878	NM_001278169	51654	Hs.435952	NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
14.2022-4	chr12	44903035	44903534	+	0	NA	intron (NM_001145110, intron 20 of 20)	MLT1A0|LTR|ERVL-MaLR	366160	NM_001145109	4753	Hs.505326	NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
19.8297	chr3	145079479	145079978	+	0	NA	Intergenic	Intergenic	799554	NM_182943	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
23.7059-3	chr1	233771625	233772124	+	0	NA	intron (NM_002245, intron 1 of 2)	L2a|LINE|L2	11976	NR_039625	100616390		NR_039625	ENSG00000265744	MIR4427	-	microRNA 4427	ncRNA
13.8405	chr5	141700324	141700823	+	0	NA	intron (NM_030964, intron 1 of 2)	intron (NM_030964, intron 1 of 2)	-2686	NR_131221	100642175	Hs.684549	NR_131221	ENSG00000281881	SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
24.3771-2	chr8	10261080	10261579	+	0	NA	intron (NM_001199729, intron 6 of 6)	MIR|SINE|MIR	-70746	NR_120604	101929191	Hs.595262	NR_120604	ENSG00000253641	LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
14.8017	chr3	32211593	32212092	+	0	NA	Intergenic	SVA_D|Other|Other	63839	NM_015141	23171	Hs.82432	NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1-like	protein-coding
13.8828	chr3	129352432	129352931	+	0	NA	Intergenic	Intergenic	-27099	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
23.1158-4	chr5	14296798	14297297	+	0	NA	intron (NM_007118, intron 6 of 56)	intron (NM_007118, intron 6 of 56)	153236	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
15.8004-6	chr7	141931472	141931971	+	0	NA	Intergenic	LTR1B|LTR|ERV1	15165	NR_024346	100289017	Hs.641504	NR_024346	ENSG00000240268	MOXD2P	MOXD2	monooxygenase, DBH-like 2, pseudogene	pseudo
14.2022-2	chr12	133128079	133128578	+	0	NA	intron (NM_001142641, intron 5 of 16)	intron (NM_001142641, intron 5 of 16)	-30255	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
13.1695	chr13	48732306	48732805	+	0	NA	Intergenic	Intergenic	-63278	NM_014166	29079	Hs.181112	NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
35.3018	chr2	85960575	85961074	+	0	NA	Intergenic	Intergenic	-20085	NM_032827	84913	Hs.135569	NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
15.2288-2	chr9	131487085	131487584	+	0	NA	promoter-TSS (NM_032799)	promoter-TSS (NM_032799)	593	NR_046240	100506100	Hs.62946	NR_046240	ENSG00000223478	LOC100506100	-	uncharacterized LOC100506100	ncRNA
19.2812-9	chr12	58730163	58730662	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	248737	NR_135022	105369785	Hs.539353	NR_135022	ENSG00000257541	LOC105369785	-	uncharacterized LOC105369785	ncRNA
14.1794	chr9	34490371	34490870	+	0	NA	intron (NM_001281428, intron 7 of 19)	intron (NM_001281428, intron 7 of 19)	31870	NM_012144	27019	Hs.112667	NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD	dynein axonemal intermediate chain 1	protein-coding
21.1634	chr2	46040420	46040919	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	161626	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
13.8405-2	chr5	38181990	38182489	+	0	NA	Intergenic	LTR79|LTR|ERVL	33657	NR_134272	101929745	Hs.374715	NR_134272	ENSG00000248461	LINC02119	-	long intergenic non-protein coding RNA 2119	ncRNA
27.0997	chr6	166891481	166891980	+	0	NA	intron (NM_001318937, intron 8 of 18)	intron (NM_001318937, intron 8 of 18)	-12859	NR_046793	100874353	Hs.675698	NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
15.7675-3	chr13	88214197	88214696	+	0	NA	intron (NR_033829, intron 1 of 5)	SVA_B|Other|Other	56549	NR_039722	100616182		NR_039722	ENSG00000266052	MIR4500	-	microRNA 4500	ncRNA
17.4958-2	chr16	10835704	10836203	+	0	NA	Intergenic	MIRb|SINE|MIR	-1690	NM_001278506	4682	Hs.81469	NM_002484	ENSG00000103274	NUBP1	NBP|NBP1|NBP35	nucleotide binding protein 1	protein-coding
16.4782-3	chr15	77821022	77821521	+	0	NA	intron (NR_135692, intron 1 of 1)	intron (NR_135692, intron 1 of 1)	3334	NR_135692	101929457	Hs.637111	NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
19.4692-2	chr14	75441164	75441663	+	0	NA	Intergenic	Intergenic	-18946	NM_001293643	5228	Hs.252820	NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
14.0561-2	chr12	125629593	125630092	+	0	NA	Intergenic	Intergenic	79929	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
13.3536-3	chr20	48744538	48745037	+	0	NA	intron (NR_027889, intron 5 of 6)	intron (NR_027889, intron 5 of 6)	-12291	NM_001282575	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
18.1531	chr17	55538435	55538934	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	62274	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
18.2391	chr10	36327138	36327637	+	0	NA	Intergenic	LTR33|LTR|ERVL	260157	NR_110138	102578074		NR_110138	ENSG00000280719	PCAT5	LINC01452|TPCAT-10-36067	prostate cancer associated transcript 5 (non-protein coding)	ncRNA
13.4775-3	chr4	89504803	89505302	+	0	NA	Intergenic	7SK|RNA|RNA	-8522	NM_014606	8916	Hs.35804	NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
19.1009-2	chr12	110094556	110095055	+	0	NA	Intergenic	Intergenic	-57382	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
15.5284-5	chr12	26981101	26981600	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	4781	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
13.2698	chr21	33824621	33825120	+	0	NA	intron (NM_001320744, intron 1 of 5)	LTR1|LTR|ERV1	40125	NR_104472	59271	Hs.208358	NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
14.4129-3	chr9	122748576	122749075	+	0	NA	Intergenic	Intergenic	51487	NR_132393	106146149	Hs.638938	NR_132393	ENSG00000261432	LINC01613	n341773	long intergenic non-protein coding RNA 1613	ncRNA
19.4692-3	chr7	116936512	116937011	+	0	NA	intron (NR_024047, intron 4 of 4)	intron (NR_024047, intron 4 of 4)	26582	NM_003391	7472	Hs.567356	NM_003391	ENSG00000105989	WNT2	INT1L1|IRP	Wnt family member 2	protein-coding
15.9688-3	chr3	173030786	173031285	+	0	NA	Intergenic	Intergenic	-85203	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
30.2228	chr8	21614250	21614749	+	0	NA	intron (NM_001165039, intron 1 of 6)	intron (NM_001165039, intron 1 of 6)	31847	NM_001165038	2675	Hs.441202	NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
15.4212	chrX	152682169	152682668	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-1363	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
14.9621	chr11	97574855	97575354	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-1316602	NM_001243271	53942	Hs.656783	NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
28.8606	chr16	1588749	1589248	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	5340	NM_024600	79652	Hs.459652	NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
26.5365	chr6	97361511	97362010	+	0	NA	intron (NM_001323258, intron 2 of 7)	MLT1D|LTR|ERVL-MaLR	-10736	NM_001323254	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
15.1004	chr14	89479373	89479872	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	189125	NM_198310	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
17.7211-2	chr7	69272556	69273055	+	0	NA	intron (NM_015570, intron 1 of 18)	MLT1F1|LTR|ERVL-MaLR	208900	NM_001127232	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
14.3771-4	chr2	235926022	235926521	+	0	NA	intron (NM_014521, intron 2 of 5)	intron (NM_014521, intron 2 of 5)	65643	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
15.6225-2	chr3	161192405	161192904	+	0	NA	Intergenic	Intergenic	-21942	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
17.5696	chr12	26775435	26775934	+	0	NA	intron (NM_002223, intron 24 of 56)	intron (NM_002223, intron 24 of 56)	210447	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
14.8945	chr16	48986141	48986640	+	0	NA	Intergenic	SVA_F|Other|Other	329352	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
14.2829-3	chr8	106532625	106533124	+	0	NA	intron (NM_012082, intron 3 of 7)	intron (NM_012082, intron 3 of 7)	201727	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
15.7187-3	chr2	56179412	56179911	+	0	NA	Intergenic	Intergenic	-28363	NM_001039348	2202	Hs.76224	NM_004105	ENSG00000115380	EFEMP1	DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5	EGF containing fibulin like extracellular matrix protein 1	protein-coding
15.4975	chr12	8123284	8123783	+	0	NA	Intergenic	CpG	-34641	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
15.5909	chr13	24085045	24085544	+	0	NA	Intergenic	Intergenic	41643	NR_038995	100506697	Hs.50118	NR_038995	ENSG00000232977	LINC00327	NCRNA00327	long intergenic non-protein coding RNA 327	ncRNA
31.2552	chr8	137499454	137499953	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	926128	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19.5468-11	chr7	111933388	111933887	+	0	NA	intron (NM_021994, intron 2 of 11)	AluJb|SINE|Alu	86994	NM_021994	11179	Hs.655904	NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
20.655	chr5	167605242	167605741	+	0	NA	intron (NM_001080428, intron 10 of 24)	intron (NM_001080428, intron 10 of 24)	53886	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19.5861-5	chr14	27086712	27087211	+	0	NA	Intergenic	L1PA16|LINE|L1	-20001	NM_002515	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
14.9621-3	chr9	131682807	131683306	+	0	NA	promoter-TSS (NM_001100876)	promoter-TSS (NM_001100876)	-118	NM_174933	254295	Hs.709447	NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
13.6151	chr5	33607889	33608388	+	0	NA	intron (NM_030955, intron 16 of 23)	MER21B|LTR|ERVL	167256	NM_001258438	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
17.7211-5	chr2	168689237	168689736	+	0	NA	intron (NM_020981, intron 1 of 1)	intron (NM_020981, intron 1 of 1)	14304	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	beta-1,3-galactosyltransferase 1	protein-coding
31.2263	chr21	33707162	33707661	+	0	NA	intron (NM_014825, intron 28 of 38)	intron (NM_014825, intron 28 of 38)	42220	NR_002996	677846	Hs.712293	NR_002996	ENSG00000200792	SNORA80A	ACA67|SNORA80	small nucleolar RNA, H/ACA box 80A	snoRNA
15.4975-2	chr3	11952718	11953217	+	0	NA	Intergenic	Intergenic	-64574	NR_104314	132001	Hs.475472	NM_138807	ENSG00000144559	TAMM41	C3orf31|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
16.1439-2	chr20	45754418	45754917	+	0	NA	intron (NM_005244, intron 9 of 15)	intron (NM_005244, intron 9 of 15)	-40942	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
13.9147	chr5	112531329	112531828	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	99034	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
15.6067	chr2	122903043	122903542	+	0	NA	Intergenic	Intergenic	390171	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
17.7989-3	chr5	144738318	144738817	+	0	NA	Intergenic	Intergenic	476365	NM_182960	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
17.0997	chr5	138519267	138519766	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	14549	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
31.5243	chr14	51862053	51862552	+	0	NA	Intergenic	Intergenic	62191	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	-	long intergenic non-protein coding RNA 640	ncRNA
20.9691	chr7	131529060	131529559	+	0	NA	Intergenic	Intergenic	-65670	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
29.1009	chr7	135507033	135507532	+	0	NA	Intergenic	Intergenic	-73688	NM_205855	389558	Hs.55200	NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
16.3264-3	chr3	94991541	94992040	+	0	NA	Intergenic	Intergenic	334683	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
21.8509	chr8	64219993	64220492	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	138680	NM_001277818	253943	Hs.491861	NM_152758	ENSG00000185728	YTHDF3	-	YTH N6-methyladenosine RNA binding protein 3	protein-coding
30.3012	chr2	122705185	122705684	+	0	NA	Intergenic	Intergenic	192313	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
13.7366-2	chr3	139879659	139880158	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	225881	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
32.8233-2	chr21	45937124	45937623	+	0	NA	TTS (NR_103707)	TTS (NR_103707)	275	NR_026548	114043	Hs.592163	NM_153204		TSPEAR-AS2	C21orf90	TSPEAR antisense RNA 2	ncRNA
26.5365-3	chr1	246581570	246582069	+	0	NA	intron (NM_001167740, intron 1 of 11)	LTR1|LTR|ERV1	-1105	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
30.3339	chr7	19972412	19972911	+	0	NA	intron (NR_110114, intron 5 of 5)	intron (NR_110114, intron 5 of 5)	-160257	NM_152774	256130	Hs.487670	NM_152774	ENSG00000173452	TMEM196	-	transmembrane protein 196	protein-coding
20.9528	chr1	159897736	159898235	+	0	NA	exon (NM_020789, exon 19 of 21)	exon (NM_020789, exon 19 of 21)	-2653	NM_003564	8407	Hs.517168	NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
27.2354	chr5	112538882	112539381	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	91481	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
13.9577-2	chr6	125589153	125589652	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	33880	NM_016063	51020	Hs.32826	NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
13.3536-4	chr1	229341143	229341642	+	0	NA	Intergenic	Intergenic	-30844	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
25.0031	chr20	16644173	16644672	+	0	NA	Intergenic	Intergenic	-66187	NM_003092	6629	Hs.280378	NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
21.7653	chr9	97733606	97734105	+	0	NA	intron (NM_032823, intron 8 of 14)	intron (NM_032823, intron 8 of 14)	-93777	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
25.6864	chr2	33760420	33760919	+	0	NA	intron (NM_015376, intron 10 of 16)	intron (NM_015376, intron 10 of 16)	21727	NM_015376	25780	Hs.143674	NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
15.6225	chr20	24222058	24222557	+	0	NA	Intergenic	L1PA13|LINE|L1	41904	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
13.2422-2	chr4	140684310	140684809	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	97637	NM_001204366	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
14.7237-6	chr17	20466334	20466833	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-16454	NM_001190790	256223	Hs.131916	NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15-like 2	protein-coding
15.3462-2	chr7	2538839	2539338	+	0	NA	Intergenic	Intergenic	-13075	NM_001166355	3955	Hs.159142	NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
17.4958-13	chr2	98758881	98759380	+	0	NA	intron (NR_144296, intron 7 of 28)	L4|LINE|RTE	-6828	NM_001345864	200403	Hs.269977	NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
18.6012	chr11	112292531	112293030	+	0	NA	Intergenic	Intergenic	-60175	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
13.2698-2	chr11	74036629	74037128	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-14157	NR_110031	283208	Hs.660541	NM_182904	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase subunit alpha 3	protein-coding
18.9963-3	chr3	72389697	72390196	+	0	NA	Intergenic	Intergenic	105828	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
20.2595	chr5	160827730	160828229	+	0	NA	intron (NM_021911, intron 6 of 10)	intron (NM_021911, intron 6 of 10)	147151	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding
16.6154-3	chr1	59014138	59014637	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-1916	NM_145243	115209	Hs.425769	NM_145243	ENSG00000162600	OMA1	2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase	OMA1 zinc metallopeptidase	protein-coding
14.3771-2	chr15	27364777	27365276	+	0	NA	intron (NM_033223, intron 3 of 9)	MLT1E1A|LTR|ERVL-MaLR	41440	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
15.1145-3	chr22	43897655	43898154	+	0	NA	intron (NM_001044370, intron 5 of 6)	intron (NM_001044370, intron 5 of 6)	-14230	NR_046563	100874197	Hs.627997	NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
17.9317-3	chr1	96119058	96119557	+	0	NA	Intergenic	Intergenic	143635	NR_110622	100996635	Hs.639548	NR_110621	ENSG00000228971	LOC100996635	-	uncharacterized LOC100996635	ncRNA
14.9349	chr5	101642904	101643403	+	0	NA	Intergenic	L2a|LINE|L2	-10900	NM_180991	353189	Hs.127648	NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
14.1117-4	chr3	159795961	159796460	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	57774	NR_104132	730109	Hs.99333	NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
16.8825-3	chr3	139812621	139813120	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	158843	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
41.3727	chr4	128041792	128042291	+	0	NA	Intergenic	LTR82B|LTR|ERVL	-512046	NM_015693	27152	Hs.391481	NM_015693	ENSG00000164066	INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
15.5129-6	chr14	44873077	44873576	+	0	NA	Intergenic	Intergenic	103173	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
29.9568	chr2	134595179	134595678	+	0	NA	Intergenic	Intergenic	-269397	NM_207363	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK associated protein 5	protein-coding
19.5468-3	chr2	102232719	102233218	+	0	NA	Intergenic	Intergenic	-81197	NM_145686	9448	Hs.701013	NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
19.2812	chr1	157419835	157420334	+	0	NA	Intergenic	Intergenic	102226	NM_031281	83416	Hs.415950	NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
15.9176-3	chr5	136934100	136934599	+	0	NA	Intergenic	Intergenic	48989	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
19.2812-6	chr4	163036423	163036922	+	0	NA	intron (NM_020116, intron 1 of 15)	UCON24|Unknown|Unknown	48514	NM_020116	56884	Hs.32452	NM_020116	ENSG00000168843	FSTL5	-	follistatin like 5	protein-coding
17.0553	chr9	70601421	70601920	+	0	NA	Intergenic	L1PA13|LINE|L1	-111459	NM_001286836	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding
40.3574-3	chr2	195197778	195198277	+	0	NA	Intergenic	Intergenic	-10966	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
39.4692	chr7	121670245	121670744	+	0	NA	intron (NM_002851, intron 14 of 29)	intron (NM_002851, intron 14 of 29)	113850	NM_005763	10157	Hs.156738	NM_005763	ENSG00000008311	AASS	LKR/SDH|LKRSDH|LORSDH	aminoadipate-semialdehyde synthase	protein-coding
14.4009	chr1	202137155	202137654	+	0	NA	non-coding (NR_002930, exon 1 of 22)	non-coding (NR_002930, exon 1 of 22)	225	NR_002930	148713	Hs.523870	NR_002930	ENSG00000243323	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase, receptor type V, pseudogene	pseudo
15.9517-3	chr2	182506378	182506877	+	0	NA	intron (NM_001030311, intron 1 of 13)	MER3|DNA|hAT-Charlie	15207	NR_027689	375298	Hs.732358	NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
17.2125-6	chr11	88209227	88209726	+	0	NA	Intergenic	Intergenic	-28268	NR_049724	100873989	Hs.616625	NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
14.9349-2	chr2	183493595	183494094	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-86924	NM_001271581	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
17.122	chr7	45334755	45335254	+	0	NA	Intergenic	Intergenic	137637	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
13.8091-10	chr1	203235213	203235712	+	0	NA	Intergenic	SVA_B|Other|Other	-20818	NR_117097	100506775	Hs.443859	NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
15.1713	chr1	184265504	184266003	+	0	NA	Intergenic	Intergenic	-90397	NM_030806	81563	Hs.497159	NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
16.6756-3	chr2	47229362	47229861	+	0	NA	intron (NM_020458, intron 8 of 19)	intron (NM_020458, intron 8 of 19)	-60617	NM_001171511	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
15.5284-4	chr7	7845081	7845580	+	0	NA	intron (NM_001302348, intron 3 of 3)	L2a|LINE|L2	-87092	NM_002947	6119	Hs.487540	NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
17.2125-2	chr7	151092776	151093275	+	0	NA	exon (NM_001284260, exon 3 of 6)	exon (NM_001284260, exon 3 of 6)	-13222	NR_034012	100131176	Hs.659231	NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
21.261	chr1	234835864	234836363	+	0	NA	Intergenic	Intergenic	-23676	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
14.3652	chr7	75843553	75844052	+	0	NA	intron (NM_001291831, intron 1 of 16)	intron (NM_001291831, intron 1 of 16)	12591	NM_001291831	222183	Hs.511025	NM_001039212	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
15.7187-4	chr17	17920379	17920878	+	0	NA	TTS (NM_001130090)	TTS (NM_001130090)	21852	NM_145691	91647	Hs.528889	NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
25.1004	chr13	79353737	79354236	+	0	NA	Intergenic	Intergenic	60199	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
27.7469	chr2	80277358	80277857	+	0	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	-183898	NR_107047	102465877		NR_107047	ENSG00000276917	MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
33.0627	chr5	126015754	126016253	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	48589	NM_207408	389320	Hs.177983	NM_207408	ENSG00000196900	TEX43	C5orf48|Tseg7	testis expressed 43	protein-coding
16.4975	chr4	102572906	102573405	+	0	NA	Intergenic	Intergenic	-138609	NM_001127507	55024	Hs.480400	NM_017935	ENSG00000153064	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding
30.8831-2	chr1	194724718	194725217	+	0	NA	Intergenic	Intergenic	1451092	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
17.2816	chr4	165927418	165927917	+	0	NA	Intergenic	Intergenic	-25484	NM_001258025	166655	Hs.368004	NM_152620	ENSG00000176979	TRIM60	RNF129|RNF33	tripartite motif containing 60	protein-coding
13.6251-4	chr2	182544032	182544531	+	0	NA	intron (NM_002500, intron 1 of 1)	intron (NM_002500, intron 1 of 1)	1111	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
16.8403-2	chr11	118600362	118600861	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-50230	NM_007180	11181	Hs.129712	NM_007180	ENSG00000118094	TREH	TRE|TREA	trehalase	protein-coding
15.5284	chr6	39298206	39298705	+	0	NA	Intergenic	Intergenic	-8125	NM_001135105	83795	Hs.287765	NM_032115	ENSG00000095981	KCNK16	K2p16.1|TALK-1|TALK1	potassium two pore domain channel subfamily K member 16	protein-coding
23.0715	chr4	56716127	56716626	+	0	NA	Intergenic	LTR1|LTR|ERV1	-3440	NM_178237	55763	Hs.269665	NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
13.4199-4	chr3	52070369	52070868	+	0	NA	Intergenic	Intergenic	19843	NM_001947	1849	Hs.591664	NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
20.8092	chr5	133238207	133238706	+	0	NA	Intergenic	Intergenic	-10912	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
17.2125-5	chr9	106295395	106295894	+	0	NA	Intergenic	L1PA14|LINE|L1	-208329	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
13.2883	chr1	1361651	1362150	+	0	NA	intron (NM_001146685, intron 1 of 1)	intron (NM_001146685, intron 1 of 1)	392	NM_001146685	643965	Hs.729765	NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding
15.1999-2	chr10	6866611	6867110	+	0	NA	intron (NR_038291, intron 2 of 4)	LTR5_Hs|LTR|ERVK	45300	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
24.023	chr22	39752368	39752867	+	0	NA	intron (NM_145731, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	6663	NM_145731	9145	Hs.216226	NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
31.0018-2	chr10	22311125	22311624	+	0	NA	Intergenic	L2|LINE|L2	-18724	NM_022365	64215	Hs.499000	NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
25.9517-2	chr9	114200707	114201206	+	0	NA	intron (NM_001080398, intron 7 of 50)	intron (NM_001080398, intron 7 of 50)	46069	NM_001080398	23392	Hs.368255	NM_001080398	ENSG00000136813	KIAA0368	ECM29	KIAA0368	protein-coding
14.0782	chr20	50547219	50547718	+	0	NA	Intergenic	Intergenic	-68016	NR_110016	101927678	Hs.683840	NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA
27.7989	chr2	161530604	161531103	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-180535	NM_016836	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
25.7025	chr7	37491222	37491721	+	0	NA	Intergenic	Intergenic	-2542	NM_001206480	9844	Hs.434989	NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
17.7728-7	chr2	22158316	22158815	+	0	NA	Intergenic	MIRc|SINE|MIR	-225041	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LINC01822	-	long intergenic non-protein coding RNA 1822	ncRNA
15.1428-3	chr1	11419000	11419499	+	0	NA	Intergenic	Intergenic	85994	NM_001330349	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
16.3451-4	chr4	39734254	39734753	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSz6|SINE|Alu	34839	NM_005339	3093	Hs.50308	NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
32.0691	chrX	13826326	13826825	+	0	NA	intron (NM_001001996, intron 1 of 7)	MIRb|SINE|MIR	8903	NM_001001995	2824	Hs.495710	NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
19.5468-4	chr1	209314724	209315223	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-183828	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
19.7469	chr3	37823823	37824322	+	0	NA	intron (NM_002207, intron 25 of 27)	intron (NM_002207, intron 25 of 27)	79199	NR_110531	101928153	Hs.657314	NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
15.784-2	chr2	96924359	96924858	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	7143	NM_001193304	55654	Hs.164303	NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
22.66	chr7	148287501	148288000	+	0	NA	promoter-TSS (NM_145304)	promoter-TSS (NM_145304)	93	NM_145304	202865	Hs.352212	NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
17.6955-2	chr13	40764844	40765343	+	0	NA	Intergenic	Intergenic	9147	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
14.9621-5	chr3	175528678	175529177	+	0	NA	Intergenic	Intergenic	-34806	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
20.1863-3	chr2	215496063	215496562	+	0	NA	Intergenic	Intergenic	121406	NR_047698	100885780	Hs.665982	NR_047698	ENSG00000224257	VWC2L-IT1	-	VWC2L intronic transcript 1	ncRNA
14.0561-4	chr13	44359673	44360172	+	0	NA	non-coding (NR_145132, exon 2 of 2)	non-coding (NR_145132, exon 2 of 2)	1194	NM_017993	55068	Hs.128258	NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
15.6864-2	chr3	178458228	178458727	+	0	NA	intron (NM_001278911, intron 1 of 4)	intron (NM_001278911, intron 1 of 4)	119716	NR_126561	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
26.8825	chr2	224732681	224733180	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-30611	NR_110905	130340	Hs.632555	NM_178814	ENSG00000152056	AP1S3	PSORS15	adaptor related protein complex 1 sigma 3 subunit	protein-coding
16.8825-4	chr12	31379525	31380414	+	0	NA	Intergenic	Intergenic	-97281	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
17.9588-2	chr2	231756144	231756643	+	0	NA	intron (NR_038238, intron 1 of 3)	intron (NR_038238, intron 1 of 3)	5132	NR_038238	151484	Hs.559309	NR_038238	ENSG00000232520	LOC151484	-	uncharacterized LOC151484	ncRNA
13.9362	chr15	86372047	86372546	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	3430	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
14.4977-8	chr21	47609016	47609515	+	0	NA	3' UTR (NM_001145436, exon 22 of 22)	3' UTR (NM_001145436, exon 22 of 22)	-4892	NM_032261	84221	Hs.381214	NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1-like	protein-coding
18.9963-2	chr8	129799784	129800283	+	0	NA	Intergenic	Intergenic	-223108	NR_121672	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
14.0121-5	chr3	66859195	66859694	+	0	NA	Intergenic	Intergenic	-70684	NR_135533	105377143	Hs.553944	NR_135533		LOC105377143	-	uncharacterized LOC105377143	ncRNA
20.716-2	chr18	3297259	3297758	+	0	NA	Intergenic	L1PB3|LINE|L1	34791	NM_001144945	103910	Hs.190086	NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
16.3451-7	chr5	83152648	83153147	+	0	NA	Intergenic	Intergenic	-136001	NM_001884	1404	Hs.2799	NM_001884	ENSG00000145681	HAPLN1	CRT1|CRTL1	hyaluronan and proteoglycan link protein 1	protein-coding
15.6225-4	chr20	33061920	33062419	+	0	NA	intron (NM_001324198, intron 16 of 24)	SVA_D|Other|Other	8039	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
58.1248	chr11	29290704	29291203	+	0	NA	Intergenic	Intergenic	712987	NR_132652	106456574	Hs.128812	NR_132652	ENSG00000261340	LINC01616	n341006	long intergenic non-protein coding RNA 1616	ncRNA
20.4866	chrX	37526936	37527435	+	0	NA	intron (NM_001170331, intron 4 of 4)	MSTB1|LTR|ERVL-MaLR	-17824	NM_021083	7504	Hs.78919	NM_021083	ENSG00000047597	XK	KX|NA|NAC|X1k|XKR1	X-linked Kx blood group	protein-coding
16.0555-5	chr20	52972143	52972642	+	0	NA	Intergenic	L2c|LINE|L2	-119619	NM_001294161	55816	Hs.473133	NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
51.6052	chr1	214637636	214638135	+	0	NA	intron (NM_005401, intron 2 of 18)	intron (NM_005401, intron 2 of 18)	87139	NM_005401	5784	Hs.193557	NM_005401	ENSG00000152104	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
20.2919-2	chr1	77226935	77227434	+	0	NA	Intergenic	AluJb|SINE|Alu	-105909	NM_001320274	81849	Hs.149201	NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
14.8017-4	chr3	100055646	100056145	+	0	NA	intron (NM_020202, intron 1 of 9)	LTR5_Hs|LTR|ERVK	2333	NM_020202	56954	Hs.439152	NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
13.8091-7	chr13	41092683	41093182	+	0	NA	Intergenic	Intergenic	-37789	NR_024507	646982	Hs.287664	NR_024505	ENSG00000215483	LINC00598	-	long intergenic non-protein coding RNA 598	ncRNA
17.0553-2	chr1	90456403	90457336	+	0	NA	Intergenic	L2c|LINE|L2	3656	NR_002830	492303	Hs.550796	NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
21.549	chr2	74740138	74740637	+	0	NA	Intergenic	Intergenic	-1209	NM_016170	3196	Hs.168586	NM_016170	ENSG00000115297	TLX2	HOX11L1|NCX	T-cell leukemia homeobox 2	protein-coding
14.5469	chr3	86589431	86589930	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	58587	NR_135563	101927494	Hs.385622	NR_135563	ENSG00000241328	LINC02070	-	long intergenic non-protein coding RNA 2070	ncRNA
40.8302	chr2	30581652	30582151	+	0	NA	Intergenic	Intergenic	12389	NR_122048	285043	Hs.429119	NR_122048		LOC285043	-	uncharacterized LOC285043	ncRNA
13.7779	chr17	25823369	25823868	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	24582	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
23.851-2	chr6	155361244	155361743	+	0	NA	Intergenic	Intergenic	-49930	NM_012454	26230	Hs.586279	NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
29.4692	chr14	57197043	57197542	+	0	NA	Intergenic	Intergenic	75089	NM_172337	5015	Hs.288655	NM_021728	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding
41.8977	chr6	15148610	15149109	+	0	NA	Intergenic	Intergenic	-97347	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
21.6622	chr1	245224098	245224597	+	0	NA	intron (NR_026587, intron 2 of 5)	MER58A|DNA|hAT-Charlie	-90176	NR_111907	101928068	Hs.134857	NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
50.1637	chr7	37799105	37799604	+	0	NA	Intergenic	Intergenic	75976	NM_181791	353345	Hs.563492	NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
17.4958-5	chr1	65641251	65641750	+	0	NA	intron (NM_001330616, intron 1 of 4)	intron (NM_001330616, intron 1 of 4)	26814	NM_001330616	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
17.8781	chr1	167050457	167050956	+	0	NA	intron (NM_005814, intron 1 of 6)	intron (NM_005814, intron 1 of 6)	9162	NM_005814	10223	Hs.651244	NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
23.7366	chr2	174580126	174580625	+	0	NA	Intergenic	Intergenic	248572	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
22.8483-2	chr11	123667494	123667993	+	0	NA	Intergenic	LTR76|LTR|ERV1	9314	NM_001005325	390261	Hs.557924	NM_001005325	ENSG00000196099	OR6M1	OR11-271	olfactory receptor family 6 subfamily M member 1	protein-coding
14.7108-8	chrX	150126554	150127053	+	0	NA	Intergenic	Intergenic	-22178	NM_001301231	3149	Hs.19114	NM_005342	ENSG00000029993	HMGB3	HMG-2a|HMG-4|HMG2A|HMG4	high mobility group box 3	protein-coding
14.9621-8	chr9	31730338	31730837	+	0	NA	Intergenic	Intergenic	-349099	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
19.431	chr3	70565168	70565667	+	0	NA	Intergenic	Intergenic	516522	NR_110000	101927152	Hs.382046	NR_110000	ENSG00000240405	SAMMSON	LINC01212	survival associated mitochondrial melanoma specific oncogenic non-coding RNA	ncRNA
25.2143-2	chr20	34474422	34474921	+	0	NA	intron (NM_016436, intron 9 of 17)	intron (NM_016436, intron 9 of 17)	67877	NM_033630	51282	Hs.584909	NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
16.5365	chr1	241579020	241579519	+	0	NA	Intergenic	SVA_F|Other|Other	-58739	NM_002924	6000	Hs.655739	NM_002924	ENSG00000182901	RGS7	-	regulator of G-protein signaling 7	protein-coding
16.2709-2	chr7	141787682	141788181	+	0	NA	intron (NM_004668, intron 38 of 47)	intron (NM_004668, intron 38 of 47)	-23618	NM_001293626	93432	Hs.647098	NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding
25.8503-2	chr3	120225327	120225826	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-55658	NM_007085	11167	Hs.269512	NM_007085	ENSG00000163430	FSTL1	FRP|FSL1|MIR198|OCC-1|OCC1|tsc36	follistatin like 1	protein-coding
15.7187	chr3	587517	588016	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-46022	NR_110118	101927215	Hs.650700	NR_110118	ENSG00000224957	LINC01266	-	long intergenic non-protein coding RNA 1266	ncRNA
15.6067-2	chr22	24824940	24825439	+	0	NA	TTS (NR_028484)	TTS (NR_028484)	1659	NM_001278499	135	Hs.197029	NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
28.2391	chr21	34216936	34217435	+	0	NA	Intergenic	Intergenic	-31132	NM_001162496	56245	Hs.517235	NM_019596	ENSG00000205929	C21orf62	B37|C21orf120|PRED81	chromosome 21 open reading frame 62	protein-coding
14.2366-5	chr8	37188293	37188792	+	0	NA	intron (NR_031672, intron 2 of 2).2	intron (NR_031672, intron 2 of 2).2	162889	NR_121620	100507420	Hs.105962	NR_121620		LINC01605	-	long intergenic non-protein coding RNA 1605	ncRNA
13.1605	chr2	439008	439507	+	0	NA	Intergenic	Intergenic	-118944	NR_136168	105373352		NR_136168		LOC105373352	-	uncharacterized LOC105373352	ncRNA
13.3255-2	chr7	116654641	116655140	+	0	NA	intron (NM_018412, intron 1 of 14)	intron (NM_018412, intron 1 of 14)	-5375	NR_106748	102466616		NR_106748	ENSG00000004866	MIR6132	hsa-mir-6132	microRNA 6132	ncRNA
19.6658	chr20	13895912	13896411	+	0	NA	intron (NR_073206, intron 4 of 20)	intron (NR_073206, intron 4 of 20)	75104	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	SEL1L2 ERAD E3 ligase adaptor subunit	protein-coding
14.7237-5	chr11	71713201	71713700	+	0	NA	TTS (NM_001286561)	TTS (NM_001286561)	2477	NM_001145055	10068	Hs.591967	NM_005699	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
25.4668	chrX	63085675	63086174	+	0	NA	Intergenic	L1PA4|LINE|L1	-79957	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468|mir-1468	microRNA 1468	ncRNA
23.9147	chr3	117507273	117507772	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-853093	NR_135573	101926968	Hs.518185	NR_135573		LOC101926968	-	uncharacterized LOC101926968	ncRNA
13.3724-2	chr22	19085065	19085564	+	0	NA	intron (NM_005137, intron 1 of 9)	intron (NM_005137, intron 1 of 9)	24653	NM_001173534	9993	Hs.517357	NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
14.3297-3	chr3	120323139	120323638	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	8260	NM_004547	4710	Hs.304613	NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
18.041-6	chr2	18432563	18433062	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	309147	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
21.2033-2	chr10	48562752	48563251	+	0	NA	Intergenic	Intergenic	-123863	NM_004962	2662	Hs.2171	NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
17.4715	chr7	133260372	133260871	+	0	NA	intron (NM_021807, intron 9 of 17)	intron (NM_021807, intron 9 of 17)	249020	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
19.5468-10	chr1	220537121	220537620	+	0	NA	Intergenic	Intergenic	-91527	NM_012414	25782	Hs.654849	NM_012414	ENSG00000118873	RAB3GAP2	RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
15.6384-5	chr5	30487141	30487640	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	606723	NR_134264	105374704	Hs.151157	NR_134264		LOC105374704	-	uncharacterized LOC105374704	ncRNA
13.6957	chr1	4455653	4456152	+	0	NA	Intergenic	Intergenic	-16209	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
26.2342-4	chr8	123926274	123926773	+	0	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	128140	NM_001330601	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
37.5449-2	chr4	165911629	165912128	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13060	NM_001012414	391712	Hs.654633	NM_001012414	ENSG00000183439	TRIM61	RNF35	tripartite motif containing 61	protein-coding
13.6051	chr1	226776573	226777072	+	0	NA	intron (NM_001003665, intron 1 of 3)	intron (NM_001003665, intron 1 of 3)	40321	NM_001003665	375057	Hs.116827	NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
16.6756	chrX	68064278	68064777	+	0	NA	Intergenic	Intergenic	15687	NM_004429	1947	Hs.144700	NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
18.8941-4	chr3	175366998	175367497	+	0	NA	intron (NM_207015, intron 11 of 13)	MLT1B|LTR|ERVL-MaLR	126874	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
16.517	chr18	50674369	50674868	+	0	NA	intron (NM_005215, intron 7 of 28)	intron (NM_005215, intron 7 of 28)	-88853	NR_130465	100616232		NR_130465	ENSG00000263872	MIR4528	-	microRNA 4528	ncRNA
14.2251-2	chr5	141807478	141807977	+	0	NA	intron (NR_120664, intron 3 of 3)	LTR86A2|LTR|ERVL	102869	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	LOC101926941	-	uncharacterized LOC101926941	ncRNA
17.4958	chr3	25033004	25033503	+	0	NA	intron (NM_001290216, intron 2 of 10)	intron (NM_001290216, intron 2 of 10)	162439	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
19.0309	chr6	111576739	111577238	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-3494	NM_153369	91749	Hs.400572	NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1	major facilitator superfamily domain containing 4B	protein-coding
16.5758	chr13	45300172	45300671	+	0	NA	Intergenic	Intergenic	83345	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
13.3724-3	chr8	42318383	42318882	+	0	NA	intron (NM_006749, intron 4 of 10)	intron (NM_006749, intron 4 of 10)	40346	NM_001257180	6575	Hs.653173	NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
15.3462	chr17	75630846	75631345	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	88072	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
13.9903	chr12	54658589	54659088	+	0	NA	intron (NM_012117, intron 1 of 4)	intron (NM_012117, intron 1 of 4)	-5468	NM_001127321	23468	Hs.349283	NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A	chromobox 5	protein-coding
17.2125-11	chr2	222041319	222041818	+	0	NA	Intergenic	Intergenic	395510	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
20.1818	chr13	25755142	25755641	+	0	NA	promoter-TSS (NR_120427)	promoter-TSS (NR_120427)	-79	NR_120427	102723318	Hs.549877	NR_120427		LINC01053	-	long intergenic non-protein coding RNA 1053	ncRNA
33.2698	chr1	109498421	109498920	+	0	NA	intron (NM_015127, intron 1 of 11)	MLT2B3|LTR|ERVL	-5600	NM_001278203	23155	Hs.658489	NM_015127	ENSG00000121940	CLCC1	MCLC	chloride channel CLIC like 1	protein-coding
23.7059-5	chr7	87085508	87086007	+	0	NA	intron (NM_000443, intron 4 of 27)	MSTB|LTR|ERVL-MaLR	19262	NM_018850	5244	Hs.654403	NM_000443	ENSG00000005471	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP binding cassette subfamily B member 4	protein-coding
18.5078	chr9	117021871	117022370	+	0	NA	intron (NM_032888, intron 28 of 60)	MIRb|SINE|MIR	50406	NR_030255	619556		NR_030255	ENSG00000207726	MIR455	MIRN455|hsa-mir-455|mir-455	microRNA 455	ncRNA
13.5754-2	chr15	93012211	93012710	+	0	NA	TTS (NM_006011)	TTS (NM_006011)	2316	NR_126501	104613533	Hs.97584	NR_126501	ENSG00000259170	LOC104613533	-	uncharacterized LOC104613533	ncRNA
13.6051-2	chr1	244363892	244364391	+	0	NA	Intergenic	Intergenic	147634	NM_006352	10472	Hs.69997	NM_006352	ENSG00000179456	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
16.3264-2	chr2	26963639	26964138	+	0	NA	Intergenic	Intergenic	-23254	NM_017877	54978	Hs.1594	NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
15.7349-2	chr3	127469075	127469574	+	0	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	72401	NM_007283	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
18.8273	chrX	10277733	10278232	+	0	NA	Intergenic	LTR40A1|LTR|ERVL	152997	NM_001256944	1183	Hs.495674	NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49	chloride voltage-gated channel 4	protein-coding
15.1286-3	chr13	99705773	99706272	+	0	NA	intron (NM_001130049, intron 1 of 32)	intron (NM_001130049, intron 1 of 32)	32638	NM_001318849	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
16.8825-5	chr17	40561956	40562455	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	13133	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	PTRF	CAVIN|CAVIN1|CGL4|FKSG13|cavin-1	polymerase I and transcript release factor	protein-coding
14.2481-3	chr7	70089453	70089952	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-507821	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
15.391-2	chr17	77409685	77410184	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	102296	NM_001082575	146713	Hs.135229	NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog 3	protein-coding
15.4975-3	chr2	148214298	148214797	+	0	NA	Intergenic	Intergenic	-387539	NM_001278579	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
14.2481-2	chr3	20879284	20879783	+	0	NA	Intergenic	Intergenic	495573	NR_110814	101927829	Hs.639381	NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
20.5404	chr17	65611359	65611858	+	0	NA	intron (NM_181671, intron 5 of 9)	intron (NM_181671, intron 5 of 9)	-102341	NM_015462	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
15.2143-2	chr1	206577587	206578086	+	0	NA	intron (NM_001170637, intron 5 of 19)	intron (NM_001170637, intron 5 of 19)	20469	NR_120535	100996712	Hs.497575	NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
13.2975-3	chr1	179064489	179064988	+	0	NA	3' UTR (NM_022371, exon 6 of 6)	3' UTR (NM_022371, exon 6 of 6)	13626	NM_022371	64222	Hs.584957	NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
13.9469	chr19	5035280	5035779	+	0	NA	intron (NM_015015, intron 3 of 22)	intron (NM_015015, intron 3 of 22)	66405	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding
18.962	chr2	169401116	169401615	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	-38088	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
16.6354	chr11	130498824	130499323	+	0	NA	Intergenic	Intergenic	-37557	NR_107019	102466873		NR_107019	ENSG00000274999	MIR8052	hsa-mir-8052	microRNA 8052	ncRNA
25.2143-3	chr4	7896466	7896965	+	0	NA	intron (NM_001134647, intron 1 of 17)	intron (NM_001134647, intron 1 of 17)	-44013	NM_203423	389199	Hs.375210	NM_203423		LOC389199	-	uncharacterized LOC389199	protein-coding
28.4164-2	chr17	67470503	67471002	+	0	NA	intron (NM_002758, intron 1 of 11)	intron (NM_002758, intron 1 of 11)	-27611	NM_001330450	5608	Hs.49329	NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
27.8516-2	chr1	99974560	99975059	+	0	NA	Intergenic	SVA_B|Other|Other	-21449	NR_125951	101928270	Hs.576048	NR_125951	ENSG00000224445	LINC01708	-	long intergenic non-protein coding RNA 1708	ncRNA
21.4874-3	chr17	53253109	53253608	+	0	NA	Intergenic	Intergenic	-88963	NM_002126	3131	Hs.196952	NM_002126	ENSG00000108924	HLF	-	HLF, PAR bZIP transcription factor	protein-coding
13.279-2	chr1	193406013	193406512	+	0	NA	Intergenic	SVA_C|Other|Other	132387	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
15.0307	chr4	53165271	53165770	+	0	NA	Intergenic	Intergenic	248023	NM_001297608	132671	Hs.527090	NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
26.2342-5	chr9	17445373	17445872	+	0	NA	intron (NM_017738, intron 18 of 25)	LTR5_Hs|LTR|ERVK	-133330	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding
16.5956-2	chr11	133476019	133476518	+	0	NA	Intergenic	Intergenic	-73761	NM_001319104	4978	Hs.4817	NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
24.7756	chr1	201239757	201240256	+	0	NA	Intergenic	Intergenic	-12574	NM_001005337	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1	protein-coding
48.9279	chr3	143056157	143056656	+	0	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	-4682	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
15.6384-4	chr8	131431181	131431680	+	0	NA	intron (NM_001247996, intron 1 of 30)	intron (NM_001247996, intron 1 of 30)	24476	NM_018482	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
24.5346	chr13	105614759	105615258	+	0	NA	Intergenic	Intergenic	-503208	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
20.8884-2	chr12	4378330	4378829	+	0	NA	intron (NR_125790, intron 1 of 1)	CpG	-4323	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
15.0307-4	chr10	45825533	45826032	+	0	NA	Intergenic	SVA_D|Other|Other	-14726	NM_001004297	79290	Hs.532435	NM_001004297	ENSG00000256574	OR13A1	-	olfactory receptor family 13 subfamily A member 1	protein-coding
14.5593-3	chr20	23976189	23976688	+	0	NA	Intergenic	Intergenic	-7022	NM_178311	92086	Hs.355394	NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
17.7211-3	chr1	153547960	153548459	+	0	NA	Intergenic	SVA_C|Other|Other	-9903	NM_005978	6273	Hs.516484	NM_005978	ENSG00000196754	S100A2	CAN19|S100L	S100 calcium binding protein A2	protein-coding
23.851	chr4	140722893	140723392	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	136220	NM_001204366	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
18.5699	chr3	122817078	122817577	+	0	NA	intron (NM_006810, intron 3 of 16)	intron (NM_006810, intron 3 of 16)	31471	NM_006810	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
15.9007-2	chr3	143848330	143848829	+	0	NA	Intergenic	Intergenic	156412	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
16.2893-2	chr12	59050344	59050843	+	0	NA	intron (NR_120452, intron 1 of 7)	MER52A|LTR|ERV1	65109	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
14.2022-3	chr8	80873644	80874143	+	0	NA	intron (NM_014018, intron 2 of 2)	intron (NM_014018, intron 2 of 2)	68613	NM_014018	28957	Hs.521124	NM_014018	ENSG00000147586	MRPS28	HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
15.5909-3	chr8	70509278	70509777	+	0	NA	intron (NR_132437, intron 1 of 16)	intron (NR_132437, intron 1 of 16)	4392	NR_132437	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding
15.986-3	chr2	122662026	122662525	+	0	NA	Intergenic	Intergenic	149154	NR_048559	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
26.5365-4	chr15	93808119	93808618	+	0	NA	Intergenic	Charlie13b|DNA|hAT-Charlie	-175925	NM_020211	56963	Hs.271277	NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
19.7062-5	chr5	97412126	97412625	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	571975	NR_105028	102546227	Hs.582516	NR_105028	ENSG00000250331	LINC01340	-	long intergenic non-protein coding RNA 1340	ncRNA
28.4771	chr3	129004879	129005378	+	0	NA	intron (NM_001006109, intron 2 of 6)	MLT1A0|LTR|ERVL-MaLR	7311	NM_001006109	56941	Hs.458320	NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine (hmC) binding, ES cell-specific	protein-coding
15.5129-5	chr20	11266493	11266992	+	0	NA	Intergenic	Intergenic	-12711	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
35.0446	chr3	159689088	159689587	+	0	NA	intron (NR_108088, intron 9 of 9)	intron (NR_108088, intron 9 of 9)	-17286	NM_000882	3592	Hs.673	NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
14.6725	chr14	104808301	104808800	+	0	NA	Intergenic	Intergenic	203490	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
13.9362-5	chr4	146637290	146637789	+	0	NA	intron (NM_001080531, intron 2 of 5)	MLT1J2|LTR|ERVL-MaLR	36183	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
25.0724	chr19	41048145	41048644	+	0	NA	intron (NM_020971, intron 20 of 35)	intron (NM_020971, intron 20 of 35)	11999	NM_025213	57731	Hs.32706	NM_020971	ENSG00000160460	SPTBN4	QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
16.1979	chr2	215667572	215668071	+	0	NA	intron (NM_001282549, intron 1 of 4)	LTR5_Hs|LTR|ERVK	6614	NM_001282545	580	Hs.591642	NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
13.279-6	chr2	174578538	174579037	+	0	NA	Intergenic	L2b|LINE|L2	250160	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
18.6967-4	chr12	101151841	101152340	+	0	NA	Intergenic	Intergenic	-36284	NM_178826	121601	Hs.58785	NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
19.431-3	chr2	67494465	67494964	+	0	NA	intron (NR_110564, intron 2 of 4)	intron (NR_110564, intron 2 of 4)	-52263	NR_038844	644838	Hs.145561	NR_038844	ENSG00000236780	LINC01829	-	long intergenic non-protein coding RNA 1829	ncRNA
20.2319	chr22	40401320	40401819	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	10616	NM_138435	113828	Hs.197680	NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
13.279-5	chr13	97710620	97711119	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-63885	NM_001346197	27199	Hs.352218	NM_080818	ENSG00000165621	OXGR1	GPR80|GPR99|P2RY15|P2Y15|aKGR	oxoglutarate receptor 1	protein-coding
18.6967-6	chr20	15740750	15741249	+	0	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	162960	NR_130925	613266	Hs.309149	NR_130924		LOC613266	-	uncharacterized LOC613266	ncRNA
14.8149	chr12	70589698	70590197	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-46827	NM_014515	4848	Hs.133350	NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
14.1229	chr17	54673682	54674181	+	0	NA	TTS (NM_005450)	TTS (NM_005450)	2871	NM_005450	9241	Hs.248201	NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
14.9214-2	chr2	38055131	38055630	+	0	NA	intron (NR_110012, intron 3 of 3)	intron (NR_110012, intron 3 of 3)	1474	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
24.8812	chr11	113327548	113328047	+	0	NA	intron (NM_016574, intron 1 of 6)	intron (NM_016574, intron 1 of 6)	-6987	NR_036183	100422855		NR_036183	ENSG00000265140	MIR4301	-	microRNA 4301	ncRNA
84.9621	chr5	10524709	10525208	+	0	NA	Intergenic	Intergenic	-2762	NR_134289	389273	Hs.519206	NR_134289	ENSG00000249160	LOC389273	-	uncharacterized LOC389273	ncRNA
22.815	chr7	105476777	105477276	+	0	NA	intron (NM_020725, intron 2 of 11)	intron (NM_020725, intron 2 of 11)	40005	NM_020725	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
15.2433	chr14	76436138	76436637	+	0	NA	intron (NM_001329939, intron 4 of 7)	L2b|LINE|L2	11978	NM_001329938	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
13.8091-6	chr14	19640680	19641179	+	0	NA	Intergenic	Intergenic	-9103	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
23.6351	chr16	75272563	75273062	+	0	NA	5' UTR (NM_001170721, exon 1 of 6)	5' UTR (NM_001170721, exon 1 of 6)	168	NM_001170721	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding
16.4975-2	chr1	53782791	53783290	+	0	NA	intron (NM_001018054, intron 2 of 17)	intron (NM_001018054, intron 2 of 17)	10781	NM_004631	7804	Hs.280387	NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
13.4679-4	chr12	12770561	12771060	+	0	NA	intron (NM_001310, intron 1 of 3)	SVA_B|Other|Other	6043	NM_001310	1389	Hs.591156	NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
30.942	chr3	8638268	8638767	+	0	NA	Intergenic	Intergenic	25049	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312	long intergenic non-protein coding RNA 312	ncRNA
15.1428	chr2	216563234	216563733	+	0	NA	intron (NR_037195, intron 5 of 9)	MLT1F|LTR|ERVL-MaLR	-19283	NR_132383	105373869	Hs.152812	NR_132383		LINC01614	LCAL4	long intergenic non-protein coding RNA 1614	ncRNA
13.9254	chr2	18449661	18450160	+	0	NA	Intergenic	Intergenic	292049	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
14.9621-9	chr4	148989161	148989660	+	0	NA	intron (NM_024605, intron 22 of 22)	intron (NM_024605, intron 22 of 22)	285664	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
26.1083	chr4	186037007	186037506	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-27161	NM_001151	291	Hs.246506	NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
17.4958-11	chr3	194459128	194459627	+	0	NA	intron (NR_037891, intron 1 of 3)	intron (NR_037891, intron 1 of 3)	30227	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LINC01968	-	long intergenic non-protein coding RNA 1968	ncRNA
24.5346-2	chr7	31347490	31347989	+	0	NA	Intergenic	Intergenic	32799	NM_022728	63974	Hs.45152	NM_022728	ENSG00000164600	NEUROD6	Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2	neuronal differentiation 6	protein-coding
15.784-3	chr20	15834762	15835261	+	0	NA	intron (NM_080676, intron 8 of 16)	MLT1E1A|LTR|ERVL-MaLR	68948	NR_130925	613266	Hs.309149	NR_130924		LOC613266	-	uncharacterized LOC613266	ncRNA
18.2102-2	chr7	66927787	66928286	+	0	NA	Intergenic	Intergenic	127073	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
20.8092-2	chr2	52334287	52334786	+	0	NA	intron (NR_135237, intron 7 of 10)	THE1D|LTR|ERVL-MaLR	-263250	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA
20.4191	chr4	36694136	36694635	+	0	NA	Intergenic	Intergenic	-266335	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
13.5952-5	chr2	127821687	127822186	+	0	NA	intron (NM_139351, intron 6 of 12)	intron (NM_139351, intron 6 of 12)	17705	NM_001320634	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
16.7162	chr21	27864482	27864981	+	0	NA	intron (NM_052954, intron 2 of 3)	intron (NM_052954, intron 2 of 3)	80992	NR_135472	116159	Hs.37445	NM_052954	ENSG00000166265	CYYR1	C21orf95	cysteine and tyrosine rich 1	protein-coding
23.5655-2	chr13	52403652	52404151	+	0	NA	intron (NR_027047, intron 2 of 4)	intron (NR_027047, intron 2 of 4)	15385	NR_027047	283521	Hs.649896	NM_178515	ENSG00000281106	LINC00282	NCRNA00282	long intergenic non-protein coding RNA 282	ncRNA
19.3181	chr1	55391722	55392221	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-39050	NM_014762	1718	Hs.498727	NM_014762	ENSG00000116133	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
17.986	chr6	151432681	151433180	+	0	NA	Intergenic	Intergenic	116662	NR_125868	102723831	Hs.684425	NR_125868		LOC102723831	-	uncharacterized LOC102723831	ncRNA
15.376	chr7	9834350	9834849	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	160699	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
20.6905	chrX	107468207	107468706	+	0	NA	intron (NM_001847, intron 3 of 44)	intron (NM_001847, intron 3 of 44)	133559	NM_001321287	115201	Hs.8763	NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2	autophagy related 4A cysteine peptidase	protein-coding
20.6753	chr8	33086534	33087033	+	0	NA	Intergenic	LTR79|LTR|ERVL	243881	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
13.6452	chr10	15429398	15429897	+	0	NA	Intergenic	FRAM|SINE|Alu	-16589	NM_001010924	221061	Hs.66762	NM_001010924	ENSG00000148468	FAM171A1	C10orf38	family with sequence similarity 171 member A1	protein-coding
13.3442	chr20	11549704	11550203	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-295922	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
35.9176	chr12	125158583	125159207	+	0	NA	Intergenic	Intergenic	-106885	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
14.0671-2	chr19	36738312	36738811	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-32575	NM_001042474	147929	Hs.596338	NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
19.5861-6	chr17	70948113	70948612	+	0	NA	intron (NM_001159770, intron 4 of 9)	intron (NM_001159770, intron 4 of 9)	140491	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding
16.7366	chr17	72956700	72957199	+	0	NA	intron (NM_030630, intron 6 of 18)	intron (NM_030630, intron 6 of 18)	-9835	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
32.2185	chr8	49730659	49731609	+	0	NA	Intergenic	Intergenic	-83264	NM_001142857	79645	Hs.23245	NM_024593	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
13.5262-2	chr16	12730705	12731204	+	0	NA	Intergenic	Intergenic	-83224	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
13.2422	chr8	119042988	119043487	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	80821	NM_000127	2131	Hs.492618	NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
14.5346	chr7	20708845	20709344	+	0	NA	intron (NM_178559, intron 5 of 18)	SVA_E|Other|Other	22128	NM_001163993	340273	Hs.404102	NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP binding cassette subfamily B member 5	protein-coding
15.0031-3	chr7	82021153	82021652	+	0	NA	intron (NM_000722, intron 1 of 38)	LTR27|LTR|ERV1	51720	NM_001302890	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
27.4232	chr9	126419421	126419920	+	0	NA	intron (NM_024820, intron 8 of 20)	G-rich|Low_complexity|Low_complexity	-171769	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
17.7211-4	chr7	53739307	53739806	+	0	NA	intron (NR_038371, intron 5 of 5)	MSTC|LTR|ERVL-MaLR	140068	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	LINC01446	GS1-179L18.1	long intergenic non-protein coding RNA 1446	ncRNA
16.3264	chr2	215482706	215483205	+	0	NA	Intergenic	MIRc|SINE|MIR	108049	NR_047698	100885780	Hs.665982	NR_047698	ENSG00000224257	VWC2L-IT1	-	VWC2L intronic transcript 1	ncRNA
17.8516-2	chr9	137682690	137683189	+	0	NA	intron (NM_001278074, intron 32 of 65)	intron (NM_001278074, intron 32 of 65)	58276	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
15.2288	chr6	101680788	101681287	+	0	NA	Intergenic	Intergenic	-165824	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
20.9854	chr17	65323471	65323970	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	39023	NM_002816	5718	Hs.4295	NM_002816	ENSG00000197170	PSMD12	Rpn5|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
22.2403	chr12	29395190	29395689	+	0	NA	intron (NM_001271784, intron 1 of 10)	intron (NM_001271784, intron 1 of 10)	18883	NM_001271784	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
20.4479-2	chr6	162056231	162056730	+	0	NA	intron (NM_013987, intron 6 of 10)	intron (NM_013987, intron 6 of 10)	164471	NR_134595	105378098	Hs.691066	NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
13.5754-5	chr3	177129909	177130408	+	0	NA	Intergenic	SVA_C|Other|Other	-29551	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19.5468	chr17	71551430	71551929	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	41857	NR_135635	101928251	Hs.434726	NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
15.6543-2	chr8	53064176	53064675	+	0	NA	intron (NM_014682, intron 15 of 25)	intron (NM_014682, intron 15 of 25)	-42497	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
13.2698-4	chr6	31212583	31213082	+	0	NA	Intergenic	SVA_F|Other|Other	27081	NM_001243042	3107	Hs.656020	NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
18.8941	chrX	38496587	38497086	+	0	NA	intron (NM_004615, intron 1 of 7)	intron (NM_004615, intron 1 of 7)	76105	NM_004615	7102	Hs.441664	NM_004615	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b	tetraspanin 7	protein-coding
25.5129	chr3	10463664	10464163	+	0	NA	intron (NM_001330611, intron 2 of 21)	intron (NM_001330611, intron 2 of 21)	-27667	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
18.9963-5	chr3	100385448	100385947	+	0	NA	intron (NM_001308362, intron 8 of 9)	LTR5_Hs|LTR|ERVK	31315	NM_001308362	84873	Hs.334511	NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
15.4821-4	chr10	112439394	112439893	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	35488	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
13.279-3	chr20	557710	558209	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	32951	NM_004609	6939	Hs.437	NM_004609	ENSG00000125878	TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15 (basic helix-loop-helix)	protein-coding
21.0127-2	chr3	153854757	153855256	+	0	NA	intron (NM_015595, intron 4 of 14)	MSTC|LTR|ERVL-MaLR	15857	NM_001251963	26084	Hs.240845	NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
23.0103	chr3	110462301	110462800	+	0	NA	Intergenic	L2|LINE|L2	326256	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
20.9044	chr7	45091505	45092004	+	0	NA	intron (NM_001029835, intron 2 of 9)	ERV3-16A3_I-int|LTR|ERVL	24521	NM_001029835	83605	Hs.148272	NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffolding protein	protein-coding
14.7366	chr15	98644976	98645475	+	0	NA	Intergenic	Intergenic	-13243	NR_120325	101927332		NR_120325		LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
18.1531-2	chr14	78128177	78128676	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-45316	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
28.8273	chr9	100740964	100741463	+	0	NA	Intergenic	Intergenic	-4276	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
28.3268	chr5	32254907	32255406	+	0	NA	intron (NM_001040446, intron 8 of 15)	MER102a|DNA|hAT-Charlie	57958	NM_001294344	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
16.0555-2	chr7	70600762	70601261	+	0	NA	intron (NM_022479, intron 1 of 10)	intron (NM_022479, intron 1 of 10)	3488	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
16.4589-2	chr17	55956698	55957197	+	0	NA	intron (NM_001292025, intron 3 of 10)	intron (NM_001292025, intron 3 of 10)	23803	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
13.7675-3	chr11	115857977	115858476	+	0	NA	Intergenic	Intergenic	-227308	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
14.9621-10	chr19	8106441	8106940	+	0	NA	Intergenic	Intergenic	-10956	NM_005624	6370	Hs.310511	NM_005624	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	C-C motif chemokine ligand 25	protein-coding
15.986-5	chr12	2045988	2046487	+	0	NA	promoter-TSS (NR_036546)	promoter-TSS (NR_036546)	-495	NR_036546	100271702	Hs.737031	NR_036546	ENSG00000235049	LINC00940	-	long intergenic non-protein coding RNA 940	ncRNA
16.4016-2	chr16	47215598	47216097	+	0	NA	intron (NM_030790, intron 14 of 17)	SVA_D|Other|Other	37868	NR_110904	101927102	Hs.634652	NR_110903		ITFG1-AS1	-	ITFG1 antisense RNA 1	ncRNA
15.0724-4	chr16	88839227	88840156	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	11937	NM_001142864	9780	Hs.377001	NM_001142864	ENSG00000103335	PIEZO1	DHS|FAM38A|LMPH3|Mib	piezo type mechanosensitive ion channel component 1	protein-coding
27.4232-2	chr5	122790612	122791111	+	0	NA	Intergenic	Intergenic	-31575	NM_001166226	153241	Hs.483209	NM_153223	ENSG00000168944	CEP120	CCDC100|SRTD13	centrosomal protein 120	protein-coding
19.7062-4	chr13	51840681	51841180	+	0	NA	intron (NM_145019, intron 4 of 4)	intron (NM_145019, intron 4 of 4)	44460	NM_001242312	220108	Hs.71913	NM_145019	ENSG00000150510	FAM124A	-	family with sequence similarity 124 member A	protein-coding
23.7882	chr10	50837497	50837996	+	0	NA	intron (NM_001142933, intron 8 of 15)	intron (NM_001142933, intron 8 of 15)	15663	NM_020549	1103	Hs.302002	NM_020549	ENSG00000070748	CHAT	CHOACTASE|CMS1A|CMS1A2|CMS6	choline O-acetyltransferase	protein-coding
16.8825	chr3	139695539	139696038	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	41761	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
21.1862	chr1	169546020	169546519	+	0	NA	intron (NM_000130, intron 2 of 24)	intron (NM_000130, intron 2 of 24)	9500	NM_000130	2153	Hs.30054	NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
14.4977	chr1	191683910	191684409	+	0	NA	Intergenic	L2a|LINE|L2	-443433	NM_130782	64407	Hs.440890	NM_130782	ENSG00000150681	RGS18	RGS13	regulator of G-protein signaling 18	protein-coding
19.1721	chrUn_gl000247	3626	4125	+	0	NA	NA	L1PA7|LINE|L1	NA	NA								
29.5078	chr1	53611696	53612195	+	0	NA	Intergenic	Intergenic	-3641	NM_001287595	6512	Hs.104637	NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
17.2125-3	chr12	56111418	56111917	+	0	NA	intron (NM_001487, intron 2 of 3)	intron (NM_001487, intron 2 of 3)	1591	NR_037656	2647	Hs.94672	NM_001487	ENSG00000135441	BLOC1S1	BLOS1|BORCS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex 1 subunit 1	protein-coding
19.2812-4	chr11	45011518	45012017	+	0	NA	Intergenic	MIR|SINE|MIR	16314	NR_026681	221122	Hs.551656	NR_026681	ENSG00000254654	LOC221122	-	uncharacterized LOC221122	ncRNA
13.4199-2	chr8	133918256	133918755	+	0	NA	intron (NM_003235, intron 16 of 47)	intron (NM_003235, intron 16 of 47)	39300	NM_003235	7038	Hs.654591	NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
24.8413	chr2	222253561	222254060	+	0	NA	Intergenic	Intergenic	183268	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
13.0277-2	chr1	10737985	10738484	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	118499	NM_001079843	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
18.0134	chr17	51431127	51431626	+	0	NA	Intergenic	Intergenic	368496	NM_001243552	100506650	Hs.146556	NM_001243552		C17orf112	-	chromosome 17 open reading frame 112	protein-coding
19.1009-9	chr20	48275395	48275894	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	54777	NM_004776	9334	Hs.370487	NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
18.0688	chr5	7565576	7566075	+	0	NA	intron (NM_020546, intron 3 of 24)	intron (NM_020546, intron 3 of 24)	169482	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
16.2709	chr14	75405887	75406386	+	0	NA	Intergenic	LTR78B|LTR|ERV1	16331	NM_001207012	5228	Hs.252820	NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
28.0134-2	chr1	165445891	165446390	+	0	NA	TTS (NR_026744)	TTS (NR_026744)	-31548	NM_006917	6258	Hs.26550	NM_006917	ENSG00000143171	RXRG	NR2B3|RXRC	retinoid X receptor gamma	protein-coding
20.7314	chr8	135998780	135999279	+	0	NA	Intergenic	L2|LINE|L2	136851	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
25.7025-2	chr22	37015910	37016409	+	0	NA	intron (NM_006078, intron 1 of 3)	intron (NM_006078, intron 1 of 3)	82531	NM_006078	10369	Hs.146766	NM_006078	ENSG00000166862	CACNG2	MRD10	calcium voltage-gated channel auxiliary subunit gamma 2	protein-coding
28.8273-2	chr5	151314584	151315083	+	0	NA	Intergenic	Intergenic	-10436	NM_000171	2741	Hs.121490	NM_000171	ENSG00000145888	GLRA1	HKPX1|STHE	glycine receptor alpha 1	protein-coding
15.7349	chr8	79524969	79525468	+	0	NA	Intergenic	Intergenic	-53064	NM_016010	51101	Hs.271876	NM_016010	ENSG00000104427	ZC2HC1A	C8orf70|CGI-62|FAM164A	zinc finger C2HC-type containing 1A	protein-coding
18.9963-7	chr7	24534086	24534585	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-78630	NM_016447	51678	Hs.533355	NM_016447	ENSG00000105926	MPP6	PALS2|VAM-1|VAM1|p55T	membrane palmitoylated protein 6	protein-coding
16.4589-4	chr22	43378406	43378905	+	0	NA	intron (NM_001184970, intron 1 of 10)	SVA_E|Other|Other	-22768	NM_001184971	11252	Hs.162877	NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19.0309-7	chr1	53608066	53608565	+	0	NA	promoter-TSS (NM_001287595)	promoter-TSS (NM_001287595)	-11	NM_001287595	6512	Hs.104637	NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
15.986-8	chr2	139621121	139621620	+	0	NA	Intergenic	7SK|RNA|RNA	-33524	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
20.7572	chr1	74951170	74951669	+	0	NA	intron (NM_015978, intron 21 of 24)	MLT1E1A|LTR|ERVL-MaLR	-91695	NR_121671	101927320	Hs.662589	NR_121670	ENSG00000234497	ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
21.2033	chr1	241104898	241105397	+	0	NA	intron (NM_002924, intron 4 of 17)	intron (NM_002924, intron 4 of 17)	-190425	NR_036069	100422856		NR_036069	ENSG00000265831	MIR3123	mir-3123	microRNA 3123	ncRNA
45.4061	chr6	122966434	122966933	+	0	NA	intron (NM_032471, intron 2 of 3)	intron (NM_032471, intron 2 of 3)	-7191	NM_001270395	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
14.7625-3	chr15	92602464	92602963	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	205183	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
17.6447-4	chr8	54117693	54118192	+	0	NA	Intergenic	Intergenic	46315	NM_000912	4986	Hs.106795	NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor kappa 1	protein-coding
17.2354-2	chr12	105218095	105218594	+	0	NA	intron (NM_032148, intron 9 of 9)	LTR1|LTR|ERV1	104128	NM_032148	84102	Hs.577463	NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
15.7675-2	chr10	127207268	127207767	+	0	NA	Intergenic	SVA_D|Other|Other	-55423	NR_023362	100169752	Hs.652647	NR_023362	ENSG00000237675	TEX36-AS1	-	TEX36 antisense RNA 1	ncRNA
13.5164-3	chr9	33800317	33800816	+	0	NA	Intergenic	Intergenic	5007	NM_002771	5646	Hs.654513	NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	protease, serine 3	protein-coding
15.986-6	chr14	95120403	95120902	+	0	NA	Intergenic	MIRb|SINE|MIR	13590	NR_015340	388007	Hs.527795	NR_015340	ENSG00000187483	SERPINA13P	SERPINA13|UNQ6121	serpin family A member 13, pseudogene	pseudo
20.1412	chr8	62296600	62297099	+	0	NA	intron (NM_173519, intron 3 of 5)	intron (NM_173519, intron 3 of 5)	96324	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
15.0446	chrX	131182929	131183428	+	0	NA	intron (NM_001042453, intron 2 of 10)	AluJb|SINE|Alu	25542	NM_001042452	51765	Hs.444247	NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
24.2136	chr3	111581800	111582299	+	0	NA	intron (NM_001134439, intron 1 of 17)	intron (NM_001134439, intron 1 of 17)	3481	NM_001134439	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
26.2342-6	chr17	48864406	48864905	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	18644	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
15.8004-4	chr6	119359096	119359595	+	0	NA	intron (NM_001100411, intron 1 of 16)	HAL1|LINE|L1	30963	NR_030315	693128		NR_030315	ENSG00000207982	MIR548B	MIRN548B	microRNA 548b	ncRNA
30.7935	chr3	30710839	30711338	+	0	NA	intron (NM_001024847, intron 4 of 7)	LTR9|LTR|ERV1	63094	NM_003242	7048	Hs.82028	NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor beta receptor 2	protein-coding
35.157	chr3	974928	975427	+	0	NA	Intergenic	Intergenic	-159165	NM_001289080	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
16.8613-2	chr2	173707205	173707704	+	0	NA	intron (NM_001100397, intron 1 of 27)	MLT1G1|LTR|ERVL-MaLR	-17312	NM_001282899	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
21.9314	chr21	28308214	28308713	+	0	NA	intron (NM_007038, intron 3 of 7)	intron (NM_007038, intron 3 of 7)	-17817	NR_039916	100616243		NR_039916	ENSG00000266133	MIR4759	-	microRNA 4759	ncRNA
19.0309-8	chr5	21685907	21686406	+	0	NA	Intergenic	MER21B|LTR|ERVL	-198407	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
14.9894-5	chr7	76135302	76135801	+	0	NA	TTS (NM_001102594)	TTS (NM_001102594)	-4108	NM_001347684	105375355	Hs.488861	NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
18.4164-2	chr5	123624759	123625258	+	0	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	149205	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
13.9903-3	chr7	147065067	147065566	+	0	NA	intron (NM_014141, intron 9 of 23)	intron (NM_014141, intron 9 of 23)	9897	NR_031645	100313895		NR_031645	ENSG00000221442	MIR548F4	MIR548F-4|MIRN548F4|hsa-mir-548f-4	microRNA 548f-4	ncRNA
23.1158-5	chr5	19855520	19856019	+	0	NA	intron (NM_001291956, intron 4 of 14)	intron (NM_001291956, intron 4 of 14)	30612	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
21.8442	chr6	150589001	150589500	+	0	NA	Intergenic	Intergenic	-100778	NM_203395	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
21.9179-2	chr3	23586574	23587073	+	0	NA	intron (NR_039621, intron 2 of 2)	LTR5_Hs|LTR|ERVK	211197	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
14.3415	chr10	121977212	121977711	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-239005	NM_001318169	196051	Hs.40479	NM_001030059	ENSG00000203805	PLPP4	DPPL2|PPAPDC1|PPAPDC1A	phospholipid phosphatase 4	protein-coding
27.6955	chr2	209064253	209064752	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-9729	NM_001099334	389073	Hs.198416	NM_001099334	ENSG00000188674	C2orf80	GONDA1	chromosome 2 open reading frame 80	protein-coding
20.2919	chr5	159003909	159004408	+	0	NA	Intergenic	Intergenic	-110874	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
15.1145	chr5	1339418	1339917	+	0	NA	intron (NM_030782, intron 3 of 16)	CpG	5518	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
15.391-3	chr19	49157872	49158371	+	0	NA	intron (NR_004401, intron 1 of 4)	intron (NR_004401, intron 1 of 4)	-8552	NM_001217	770	Hs.428446	NM_001217	ENSG00000063180	CA11	CARPX1	carbonic anhydrase 11	protein-coding
13.2883-2	chr13	36249155	36249654	+	0	NA	Intergenic	Intergenic	-22257	NR_132116	100507114	Hs.236298	NR_132115	ENSG00000236036	LINC00445	-	long intergenic non-protein coding RNA 445	ncRNA
27.1897-2	chr7	81305782	81306281	+	0	NA	intron (NR_126025, intron 1 of 10)	intron (NR_126025, intron 1 of 10)	14691	NR_126025	100128317	Hs.571267	NR_126025	ENSG00000233491	LOC100128317	-	uncharacterized LOC100128317	ncRNA
20.716	chr14	76434787	76435286	+	0	NA	intron (NM_001329939, intron 4 of 7)	intron (NM_001329939, intron 4 of 7)	13329	NM_001329938	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
17.0115-2	chr3	69343710	69344209	+	0	NA	intron (NM_015123, intron 4 of 22)	intron (NM_015123, intron 4 of 22)	91496	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
14.7108-6	chr6	138538471	138538970	+	0	NA	3' UTR (NM_021635, exon 1 of 1)	3' UTR (NM_021635, exon 1 of 1)	907	NM_021635	59351	Hs.302016	NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
21.1577	chr17	44019517	44020016	+	0	NA	intron (NM_001123066, intron 1 of 14)	intron (NM_001123066, intron 1 of 14)	46617	NR_024560	100130148	Hs.669307	NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA
15.4668	chr11	123225829	123226328	+	0	NA	Intergenic	AluJb|SINE|Alu	26142	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
22.1968	chr10	45834552	45835051	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-23745	NM_001004297	79290	Hs.532435	NM_001004297	ENSG00000256574	OR13A1	-	olfactory receptor family 13 subfamily A member 1	protein-coding
13.4679	chr9	100845179	100845678	+	0	NA	TTS (NM_018946)	TTS (NM_018946)	26469	NM_018946	54187	Hs.522310	NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
20.1144	chr10	49836146	49836645	+	0	NA	intron (NR_045675, intron 2 of 10)	MIRb|SINE|MIR	-23219	NR_144645	58504	Hs.655672	NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
31.798-2	chr13	81969482	81969981	+	0	NA	Intergenic	MER61C|LTR|ERV1	-168613	NR_047494	100861546	Hs.539621	NR_047494	ENSG00000260094	LINC00564	-	long intergenic non-protein coding RNA 564	ncRNA
25.2143	chr1	183833751	183834250	+	0	NA	intron (NM_001297670, intron 3 of 17)	intron (NM_001297670, intron 3 of 17)	59785	NM_001297672	23179	Hs.497148	NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
18.4164-4	chr5	1596528	1597027	+	0	NA	TTS (NR_003713)	TTS (NR_003713)	-2131	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
25.391	chr16	83708594	83709093	+	0	NA	intron (NM_001257, intron 9 of 13)	intron (NM_001257, intron 9 of 13)	128738	NR_120308	102724163		NR_120308	ENSG00000260228	LOC102724163	-	uncharacterized LOC102724163	ncRNA