.
├── [ 131 08-Jul-2020 09:18] 20190708_EHK_RPP4_TT7081_S21.pseudoalignments.bam.bai
├── [ 100 22-Jul-2020 15:00] 20190708_EHK_RPP4_TT7081_S21.starAligned.out.sorted.bam
├── [ 104 22-Jul-2020 15:00] 20190708_EHK_RPP4_TT7081_S21.starAligned.out.sorted.bam.bai
├── [ 121 08-Jul-2020 09:18] 20190708_RPP1_TT7081_S1.pseudoalignments.bam.bai
├── [ 95 22-Jul-2020 15:00] 20190708_RPP1_TT7081_S1.starAligned.out.sorted.bam
├── [ 99 22-Jul-2020 15:00] 20190708_RPP1_TT7081_S1.starAligned.out.sorted.bam.bai
├── [ 121 08-Jul-2020 09:18] 20190708_RPP2_TT7081_S2.pseudoalignments.bam.bai
├── [ 95 22-Jul-2020 15:00] 20190708_RPP2_TT7081_S2.starAligned.out.sorted.bam
├── [ 99 22-Jul-2020 15:00] 20190708_RPP2_TT7081_S2.starAligned.out.sorted.bam.bai
├── [ 123 08-Jul-2020 09:18] 20190708_RPPM1_TT7081_S3.pseudoalignments.bam.bai
├── [ 96 22-Jul-2020 15:00] 20190708_RPPM1_TT7081_S3.starAligned.out.sorted.bam
├── [ 100 22-Jul-2020 15:00] 20190708_RPPM1_TT7081_S3.starAligned.out.sorted.bam.bai
├── [ 123 08-Jul-2020 09:18] 20190708_RPPM2_TT7081_S4.pseudoalignments.bam.bai
├── [ 96 22-Jul-2020 15:00] 20190708_RPPM2_TT7081_S4.starAligned.out.sorted.bam
├── [ 100 22-Jul-2020 15:00] 20190708_RPPM2_TT7081_S4.starAligned.out.sorted.bam.bai
├── [ 123 08-Jul-2020 09:18] 20190708_RPPM3_TT7081_S5.pseudoalignments.bam.bai
├── [ 96 22-Jul-2020 15:00] 20190708_RPPM3_TT7081_S5.starAligned.out.sorted.bam
├── [ 100 22-Jul-2020 15:00] 20190708_RPPM3_TT7081_S5.starAligned.out.sorted.bam.bai
├── [ 55 08-Jul-2020 09:17] bam*
├── [ 49 03-Oct-2019 10:28] bed_chr_6.bed
├── [ 54 03-Oct-2019 10:28] bed_chr_6.sort.bed
├── [ 58 03-Oct-2019 10:28] bed_chr_6.sort.bed.idx
├── [ 117 03-Oct-2019 10:28] ERV_3utr.blastp.retro.e1.longest_orfs_subsequence_predictions_a201_aff255.csv
├── [ 167 03-Oct-2019 10:28] ERV_3utr.blastp.retro.e1.subsequence_predictions_a0201_aff255.csv
├── [ 82 24-Mar-2020 17:37] H69_ALL_auto_treat_pileup.wig.gz.tdf
├── [ 102 16-Mar-2022 10:29] H69_ALL.ext100_all_1E-15_peaks.narrowPeak.chr3.single.bed
├── [ 95 16-Mar-2022 12:19] H69_ALL.ext100_all_1E-15_peaks.narrowPeak.trim.bed
├── [ 100 16-Mar-2022 10:29] H69_ALL.ext100_all_1E-15_peaks.narrowPeak.trim.chr3.bed
├── [ 111 16-Mar-2022 10:40] H69_ALL.ext100_all_1E-15_peaks.narrowPeak.trim.chr3_mpbs.bed
├── [ 106 16-Mar-2022 12:20] H69_ALL.ext100_all_1E-15_peaks.narrowPeak.trim_mpbs.bed
├── [ 91 01-Apr-2020 12:40] H69_ALL.name.sorted.fixed.split.shift.trim.bam
├── [ 85 03-Oct-2019 10:28] H69AR_ALL_auto_treat_pileup.wig.gz.tdf
├── [ 104 16-Mar-2022 10:29] H69AR_ALL.ext100_all_1E-15_peaks.narrowPeak.chr3.single.bed
├── [ 97 16-Mar-2022 12:19] H69AR_ALL.ext100_all_1E-15_peaks.narrowPeak.trim.bed
├── [ 102 16-Mar-2022 10:29] H69AR_ALL.ext100_all_1E-15_peaks.narrowPeak.trim.chr3.bed
├── [ 113 16-Mar-2022 10:40] H69AR_ALL.ext100_all_1E-15_peaks.narrowPeak.trim.chr3_mpbs.bed
├── [ 108 16-Mar-2022 12:20] H69AR_ALL.ext100_all_1E-15_peaks.narrowPeak.trim_mpbs.bed
├── [ 93 01-Apr-2020 12:40] H69AR_ALL.name.sorted.fixed.split.shift.trim.bam
├── [ 84 03-Oct-2019 10:28] H69M_ALL_auto_treat_pileup.wig.gz.tdf
├── [ 92 01-Apr-2020 12:40] H69M_ALL.name.sorted.fixed.split.shift.trim.bam
├── [ 123 01-May-2020 12:25] h69m_vs_h69_k27ac_MAnorm_result_nohead_for_homer_annfull.txt
├── [ 202 03-Oct-2019 10:28] hg19_3utr_ERV_UPgene_H69M_subsequence_predictions_a0201_aff255.csv
├── [ 198 03-Oct-2019 10:28] hg19_ERV_3utr_intersect_H69M_UP_logFC1_subsequence_predictions_a0201_aff255.csv
├── [ 202 03-Oct-2019 10:28] hg19_ERV_3utr_intersect_H69M_UP_logFC1_subsequence_predictions_a0201_net_aff255.csv
├── [ 70 03-Oct-2019 10:28] hg19_ERV_3utr_nochr_unique.bed
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0101_aff884.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0101_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0101_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0201_aff255.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0201_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0201_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0301_aff602.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0301_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a0301_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a2301_aff740.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a2301_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a2301_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a2402_aff849.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a2402_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_a2402_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b0702_aff687.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b0702_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b0702_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b0801_aff663.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b0801_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b0801_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b3501_aff348.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b3501_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b3501_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b4403_aff780.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b4403_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b4403_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b5101_aff939.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b5101_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_b5101_hist2.pdf
├── [ 151 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0401_aff1000.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0401_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0401_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0602_aff500.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0602_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0602_hist2.pdf
├── [ 151 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0701_aff1000.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0701_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0701_hist2.pdf
├── [ 150 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0702_aff500.csv
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0702_hist1.pdf
├── [ 149 03-Oct-2019 10:28] hg19_ERV_3utr_subsequence_predictions_c0702_hist2.pdf
├── [ 18107 03-Oct-2019 10:28] Israel_ADAM19_igv_snapshot.png
├── [ 18878 03-Oct-2019 10:28] Israel_AIG1_igv_snapshot.png
├── [ 19161 03-Oct-2019 10:28] Israel_ANTXR1_igv_snapshot.png
├── [ 17904 03-Oct-2019 10:28] Israel_BEND6_igv_snapshot.png
├── [ 17110 03-Oct-2019 10:28] Israel_CD274_igv_snapshot.png
├── [ 17817 03-Oct-2019 10:28] Israel_CXCL10_igv_snapshot.png
├── [ 17561 03-Oct-2019 10:28] Israel_EPHA3_igv_snapshot.png
├── [ 16934 03-Oct-2019 10:28] Israel_F3_igv_snapshot.png
├── [ 18562 03-Oct-2019 10:28] Israel_HERC3_igv_snapshot.png
├── [ 17084 03-Oct-2019 10:28] Israel_IFI44L_igv_snapshot.png
├── [ 18514 03-Oct-2019 10:28] Israel_IL32_igv_snapshot.png
├── [ 16636 03-Oct-2019 10:28] Israel_MSRB2_igv_snapshot.png
├── [ 18097 03-Oct-2019 10:28] Israel_SERPINB9_igv_snapshot.png
├── [ 18239 03-Oct-2019 10:28] Israel_SPATS2L_igv_snapshot.png
├── [ 18851 03-Oct-2019 10:28] Israel_TNFRSF9_igv_snapshot.png
├── [ 16849 03-Oct-2019 10:28] Israel_TRIM22_igv_snapshot.png
├── [ 16225 03-Oct-2019 10:28] Israel_TRIM38_igv_snapshot.png
├── [ 121 03-Oct-2019 10:28] longest_orfs_complete.pep
├── [ 174 01-May-2020 09:40] mf_hw_h69ar_k27ac_hg_S21_hg19_p5_swig_treat_afterfiting_all.scaled.wig.gz.tdf
├── [ 179 01-May-2020 09:40] mf_hw_h69ar_k27me3_hg_S22_hg19_p5_swig_treat_afterfiting_all.1k.scaled.wig.gz.tdf
├── [ 170 01-May-2020 09:40] mf_hw_h69_k27ac_hg_S18_hg19_p5_swig_treat_afterfiting_all.scaled.wig.gz.tdf
├── [ 175 01-May-2020 09:40] mf_hw_h69_k27me3_hg_S19_hg19_p5_swig_treat_afterfiting_all.1k.scaled.wig.gz.tdf
├── [ 172 01-May-2020 09:40] mf_hw_h69m_k27ac_hg_S24_hg19_p5_swig_treat_afterfiting_all.scaled.wig.gz.tdf
├── [ 177 01-May-2020 09:40] mf_hw_h69m_k27me3_hg_S25_hg19_p5_swig_treat_afterfiting_all.1k.scaled.wig.gz.tdf
├── [ 58 22-Jul-2020 16:40] Mmus38.geve.v1.bed
├── [ 56 03-Oct-2019 10:28] SNP_bed_chr_6.bed.gz
├── [ 144 03-Oct-2019 10:28] sparcs_ERV_subsequence_predictions_a0201_aff255.csv
├── [ 143 03-Oct-2019 10:28] sparcs_ERV_subsequence_predictions_a0201_hist1.pdf
├── [ 143 03-Oct-2019 10:28] sparcs_ERV_subsequence_predictions_a0201_hist2.pdf
└── [ 129 03-Oct-2019 10:28] spracs_longest_orfs_complete.pep.txt
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