PeakID (cmd=annotatePeaks.pl sample2_uniq_peaks.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 127 chr10 37513487 37513945 + 0 NA intron (NM_052997, intron 34 of 35) intron (NM_052997, intron 34 of 35) -84398 NR_104061 101929520 Hs.144151 XR_242757 LINC00993 RP11-20F24.4 long intergenic non-protein coding RNA 993 ncRNA 1801 chr16 55786332 55788196 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR -7247 NR_003276 51716 Hs.721645 NR_003276 ENSG00000228695 CES1P1 CES1A2|CES1A3|CES4|CESR|PCE-3 carboxylesterase 1 pseudogene 1 pseudo 71 chr1 199945705 199946564 + 0 NA Intergenic L2a|LINE|L2 -50596 NM_003822 2494 Hs.33446 XM_005245061 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 1648 chr12 76083556 76085312 + 0 NA Intergenic Intergenic -179016 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 1481 chr10 34810339 34812586 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 292791 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 3074 chr5 142174394 142176902 + 0 NA intron (NM_015071, intron 1 of 22) (TG)n|Simple_repeat|Simple_repeat 25356 NM_001135608 23092 Hs.654668 XM_005268398 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 2927 chr2 47425684 47427474 + 0 NA non-coding (NR_110208, exon 4 of 5) non-coding (NR_110208, exon 4 of 5) -22839 NM_001743 805 Hs.468442 XM_005264576 ENSG00000143933 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 2266 chr4 175410321 175413323 + 0 NA 3' UTR (NM_000860, exon 7 of 7) 3' UTR (NM_000860, exon 7 of 7) 32222 NM_001256301 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 hydroxyprostaglandin dehydrogenase 15-(NAD) protein-coding 3163 chr8 38315518 38318375 + 0 NA intron (NM_023110, intron 1 of 17) intron (NM_023110, intron 1 of 17) 8417 NM_001174067 2260 Hs.264887 XM_005273449 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 1178 chr8 25072137 25073290 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 30426 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2915 chr2 174028508 174031184 + 0 NA intron (NM_016653, intron 2 of 19) intron (NM_016653, intron 2 of 19) 89281 NM_016653 51776 Hs.444451 XM_005246639 ENSG00000091436 ZAK AZK|MLK7|MLT|MLTK|MRK|mlklak|pk sterile alpha motif and leucine zipper containing kinase AZK protein-coding 1387 chr1 3445098 3448982 + 0 NA intron (NM_001409, intron 4 of 36) intron (NM_001409, intron 4 of 36) 30314 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 512 chr17 15794996 15798410 + 0 NA Intergenic Intergenic -51528 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 1932 chr19 10221416 10224515 + 0 NA TTS (NM_020230) TTS (NM_020230) 768 NM_002566 5032 Hs.14468 NM_002566 ENSG00000244165 P2RY11 P2Y11 purinergic receptor P2Y, G-protein coupled, 11 protein-coding 463 chr16 15669917 15670586 + 0 NA intron (NM_033201, intron 3 of 5) MER5B|DNA|hAT-Charlie 34701 NR_106761 102465252 NR_106761 MIR6506 hsa-mir-6506 microRNA mir-6506 ncRNA 517 chr17 15823458 15825066 + 0 NA Intergenic Intergenic -23969 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 458 chr16 15595077 15597307 + 0 NA promoter-TSS (NM_001142469) promoter-TSS (NM_001142469) 69 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 2634 chr9 114803114 114805832 + 0 NA intron (NM_001282640, intron 15 of 17) intron (NM_001282640, intron 15 of 17) 110093 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 1785 chr15 93276772 93278297 + 0 NA Intergenic Intergenic -61180 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 1250 chr8 122823095 122825047 + 0 NA Intergenic Intergenic -170441 NM_005328 3037 Hs.159226 XM_005250900 HAS2 - hyaluronan synthase 2 protein-coding 1363 chr1 149799627 149839413 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 2820 NR_036461 337873 Hs.666643 NR_036461 ENSG00000203819 HIST2H2BC H2B/t|HIST2H2BD histone cluster 2, H2bc (pseudogene) pseudo 722 chr2 145785727 145786657 + 0 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 360658 NR_033870 401014 Hs.742290 NR_033870 TEX41 AC074093.1|DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 2507 chr8 22437198 22441407 + 0 NA intron (NM_176871, intron 2 of 9) intron (NM_176871, intron 2 of 9) 1315 NM_176871 64236 Hs.632034 XM_005273597 ENSG00000120913 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 (mystique) protein-coding 3051 chr5 10516399 10521314 + 0 NA Intergenic L1MC4|LINE|L1 -16016 NR_104606 101929412 Hs.508287 XR_241739 ENSG00000249396 RP11-1C1.4 - uncharacterized LOC101929412 ncRNA 1109 chr7 128071248 128071850 + 0 NA Intergenic Intergenic -21513 NM_001142576 3614 Hs.654401 XM_005250313 ENSG00000106348 IMPDH1 IMPD|IMPD1|LCA11|RP10|sWSS2608 IMP (inosine 5'-monophosphate) dehydrogenase 1 protein-coding 2067 chr20 12956511 12959785 + 0 NA Intergenic L2c|LINE|L2 -24981 NR_109868 101929486 Hs.548761 XR_244247 ENSG00000233048 RP5-1069C8.2 - uncharacterized LOC101929486 ncRNA 1630 chr12 14409586 14412150 + 0 NA Intergenic Intergenic -107698 NM_018179 55729 Hs.591151 XM_005253423 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1597 chr11 76902139 76903447 + 0 NA intron (NM_001127180, intron 30 of 48) intron (NM_001127180, intron 30 of 48) 63477 NM_001127180 4647 Hs.370421 XM_005274011 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 3185 chr8 67044284 67046164 + 0 NA intron (NM_033058, intron 2 of 10) intron (NM_033058, intron 2 of 10) 5946 NM_184086 84675 Hs.85524 XM_005251316 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 3109 chr7 11737848 11740127 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 132837 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 728 chr2 165398520 165399894 + 0 NA intron (NM_004490, intron 3 of 13) L1PA16|LINE|L1 79153 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 1244 chr8 103749944 103751643 + 0 NA Intergenic Intergenic -82663 NM_005655 7071 Hs.435001 NM_001032282 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 2154 chr3 78918350 78923819 + 0 NA intron (NM_133631, intron 2 of 28) intron (NM_133631, intron 2 of 28) 147525 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 1638 chr12 38449364 38452262 + 0 NA Intergenic AluJr|SINE|Alu -259744 NM_001013620 144245 Hs.259305 XM_005268665 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 742 chr2 219773310 219774645 + 0 NA intron (NR_110238, intron 3 of 4) CpG 21382 NR_110238 101928537 Hs.611129 XR_241418 ENSG00000228135 AC073128.10 - uncharacterized LOC101928537 ncRNA 29 chr1 12545691 12547270 + 0 NA intron (NM_018156, intron 66 of 68) intron (NM_018156, intron 66 of 68) -20820 NR_003025 677885 Hs.721005 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 350 chr14 50506631 50507960 + 0 NA promoter-TSS (NR_102736) promoter-TSS (NR_102736) -693 NR_102736 100506499 Hs.732459 NR_102736 RP11-58E21.3 - uncharacterized LOC100506499 ncRNA 1969 chr19 37063566 37065133 + 0 NA promoter-TSS (NM_020951) promoter-TSS (NM_020951) -152 NM_020951 57711 Hs.654960 NM_001145649 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 1810 chr16 4327942 4330617 + 0 NA Intergenic AluSz|SINE|Alu -6278 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding 2203 chr3 170716985 170719618 + 0 NA intron (NM_001278658, intron 7 of 9) intron (NM_001278658, intron 7 of 9) 26467 NM_001278658 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 58 chr1 110452534 110455321 + 0 NA intron (NM_172210, intron 1 of 8) intron (NM_172210, intron 1 of 8) 694 NM_172211 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 (macrophage) protein-coding 153 chr11 28065371 28066546 + 0 NA intron (NM_031217, intron 13 of 16) intron (NM_031217, intron 13 of 16) -12404 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 2932 chr2 153381351 153383087 + 0 NA intron (NM_052905, intron 2 of 25) intron (NM_052905, intron 2 of 25) 190468 NM_052905 114793 Hs.654630 XM_005246263 ENSG00000157827 FMNL2 FHOD2 formin-like 2 protein-coding 2754 chr11 46320646 46322159 + 0 NA intron (NM_052854, intron 1 of 11) intron (NM_052854, intron 1 of 11) 22213 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3-like 1 protein-coding 2387 chr7 95114349 95125609 + 0 NA intron (NM_145872, intron 1 of 2) intron (NM_145872, intron 1 of 2) 4766 NM_145872 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 1546 chr11 6947068 6948925 + 0 NA intron (NM_013250, intron 1 of 6) CpG 342 NM_013250 7762 Hs.523457 XM_005253130 ENSG00000149054 ZNF215 BAZ-2|BAZ2|ZKSCAN11|ZSCAN43 zinc finger protein 215 protein-coding 101 chr10 30237664 30239660 + 0 NA Intergenic Intergenic 109826 NM_020848 57608 Hs.533953 XM_005252548 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 2994 chr3 78895667 78898909 + 0 NA intron (NM_133631, intron 2 of 28) intron (NM_133631, intron 2 of 28) 171321 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 340 chr14 29052268 29053479 + 0 NA Intergenic AluJb|SINE|Alu -183405 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 3256 chrX 133704073 133708955 + 0 NA intron (NM_021796, intron 2 of 2) intron (NM_021796, intron 2 of 2) 22460 NR_038998 100506757 Hs.130961 NR_038998 LINC00629 AC004383.5 long intergenic non-protein coding RNA 629 ncRNA 311 chr12 116976864 116977706 + 0 NA Intergenic LTR86A2|LTR|ERVL 6045 NR_027346 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 825 chr22 39377746 39379024 + 0 NA promoter-TSS (NM_004900) promoter-TSS (NM_004900) -19 NM_001270411 9582 Hs.658626 XM_005261858 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B protein-coding 917 chr4 75547250 75551058 + 0 NA Intergenic L3|LINE|CR1 68525 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 2425 chr7 116410718 116414691 + 0 NA intron (NM_001127500, intron 14 of 20) intron (NM_001127500, intron 14 of 20) -89859 NM_006136 830 Hs.446123 XR_242266 CAPZA2 CAPPA2|CAPZ capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 495 chr16 81174586 81175252 + 0 NA exon (NM_001278425, exon 20 of 32) exon (NM_001278425, exon 20 of 32) 40048 NM_001278423 114780 Hs.413525 NM_001076780 ENSG00000166473 PKD1L2 PC1L2 polycystic kidney disease 1-like 2 protein-coding 1703 chr14 29051185 29055534 + 0 NA Intergenic L1MB7|LINE|L1 -182919 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 2086 chr20 50246288 50249104 + 0 NA intron (NM_006045, intron 15 of 27) intron (NM_006045, intron 15 of 27) -68326 NM_001258294 4773 Hs.744148 XM_005260413 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding 1322 chr9 132101064 132102046 + 0 NA Intergenic Intergenic 18260 NM_001012715 414318 Hs.449434 NM_001012715 C9orf106 bA65J3.5 chromosome 9 open reading frame 106 protein-coding 1816 chr16 11438315 11441477 + 0 NA intron (NM_152308, intron 1 of 1) MER5A|DNA|hAT-Charlie 585 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 2460 chr8 41385796 41388307 + 0 NA intron (NM_032336, intron 1 of 7) intron (NM_032336, intron 1 of 7) 326 NM_032336 84296 Hs.656996 XM_005273659 ENSG00000147536 GINS4 SLD5 GINS complex subunit 4 (Sld5 homolog) protein-coding 2510 chr8 25027263 25029457 + 0 NA Intergenic Intergenic -13927 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1172 chr8 25048319 25049084 + 0 NA intron (NM_024940, intron 1 of 51) Charlie1b|DNA|hAT-Charlie 6414 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2699 chr1 160795203 160798072 + 0 NA intron (NM_002348, intron 9 of 9) intron (NM_002348, intron 9 of 9) 30773 NM_001033667 4063 Hs.403857 XM_005245161 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 2458 chr8 32422962 32427848 + 0 NA intron (NM_013964, intron 1 of 11) intron (NM_013964, intron 1 of 11) 19677 NM_004495 3084 Hs.668810 XM_005273485 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|NDF|SMDF neuregulin 1 protein-coding 1259 chr8 128218029 128219516 + 0 NA TTS (NR_108049) TTS (NR_108049) 12741 NR_108049 100507056 Hs.343864 XR_108886 ENSG00000247844 CCAT1 - colon cancer associated transcript 1 (non-protein coding) ncRNA 834 chr22 45897800 45900798 + 0 NA intron (NM_006485, intron 1 of 14) CpG 580 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 285 chr12 76333867 76335214 + 0 NA Intergenic Intergenic 91016 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 2976 chr3 45218446 45221957 + 0 NA Intergenic MIRb|SINE|MIR -32287 NM_178181 64866 Hs.476093 XM_005265404 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 2441 chr8 6765430 6769038 + 0 NA Intergenic Intergenic 16364 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin, alpha 6, Paneth cell-specific protein-coding 2414 chr7 79916298 79919052 + 0 NA Intergenic L1M1|LINE|L1 86080 NR_110075 101927269 Hs.583232 XR_242303 AC004862.6 - uncharacterized LOC101927269 ncRNA 1216 chr8 56756623 56758627 + 0 NA Intergenic Intergenic -34761 NM_001111097 4067 Hs.545418 XM_005251232 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn v-yes-1 Yamaguchi sarcoma viral related oncogene homolog protein-coding 3238 chr9 93833089 93834770 + 0 NA intron (NR_033912, intron 1 of 3) intron (NR_033912, intron 1 of 3) 3485 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 2285 chr5 179764688 179772841 + 0 NA intron (NM_005110, intron 1 of 18) intron (NM_005110, intron 1 of 18) 11551 NM_005110 9945 Hs.696497 XM_005266017 ENSG00000131459 GFPT2 GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 2274 chr5 14034283 14041142 + 0 NA Intergenic Intergenic -93123 NM_001369 1767 Hs.212360 XM_005248262 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 2194 chr3 129321582 129326873 + 0 NA exon (NM_015103, exon 1 of 36) exon (NM_015103, exon 1 of 36) 1355 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 3092 chr6 122972038 122975663 + 0 NA promoter-TSS (NM_001270395) promoter-TSS (NM_001270395) -24 NM_001270395 5570 Hs.744965 NM_001270393 ENSG00000135549 PKIB PRKACN2 protein kinase (cAMP-dependent, catalytic) inhibitor beta protein-coding 1135 chr8 6766689 6767414 + 0 NA Intergenic Intergenic 16547 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin, alpha 6, Paneth cell-specific protein-coding 2002 chr2 10258811 10267452 + 0 NA exon (NM_001034, exon 2 of 10) exon (NM_001034, exon 2 of 10) 268 NM_001034 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase M2 protein-coding 2864 chr17 14845069 14847149 + 0 NA Intergenic Intergenic -88183 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 (non-protein coding) ncRNA 1203 chr8 38298668 38300688 + 0 NA intron (NM_001174064, intron 2 of 18) intron (NM_001174064, intron 2 of 18) 25685 NM_001174067 2260 Hs.264887 XM_005273449 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 96 chr10 12672495 12674709 + 0 NA intron (NM_020397, intron 2 of 9) LTR10C|LTR|ERV1 52850 NR_039700 100616151 NR_039700 MIR4480 - microRNA 4480 ncRNA 2088 chr20 52293503 52297277 + 0 NA Intergenic Intergenic -95754 NM_006526 7764 Hs.711564 XM_005260545 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 1068 chr7 11814708 11815488 + 0 NA intron (NM_015204, intron 1 of 26) L1MB3|LINE|L1 56726 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 1667 chr12 118770727 118777699 + 0 NA intron (NM_016281, intron 1 of 20) L1MD2|LINE|L1 36537 NM_016281 51347 Hs.644420 XM_005253897 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18 TAO kinase 3 protein-coding 2114 chr22 18242679 18245232 + 0 NA intron (NM_001244567, intron 1 of 5) intron (NM_001244567, intron 1 of 5) 3070 NR_036168 100423025 NR_036168 MIR3198-1 MIR3198 microRNA 3198-1 ncRNA 486 chr16 69097747 69098438 + 0 NA intron (NM_024562, intron 17 of 17) intron (NM_024562, intron 17 of 17) -41375 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 2134 chr22 43057927 43059163 + 0 NA Intergenic CpG -13140 NM_000398 1727 Hs.561064 NM_000398 ENSG00000100243 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 1354 chrX 150016906 150018423 + 0 NA intron (NM_031462, intron 1 of 10) intron (NM_031462, intron 1 of 10) 49625 NM_001184808 83692 Hs.522805 XM_005274757 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 569 chr17 76309541 76314521 + 0 NA Intergenic Intergenic -37458 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 RP11-219G17.4 - uncharacterized LOC100996291 ncRNA 8 chr1 92354365 92358232 + 0 NA intron (NM_001195684, intron 2 of 17) MIR|SINE|MIR -4462 NR_036634 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 3239 chr9 100475873 100478164 + 0 NA Intergenic Intergenic -17327 NM_000380 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC xeroderma pigmentosum, complementation group A protein-coding 2359 chr6 55500262 55503242 + 0 NA Intergenic Intergenic -57740 NR_109869 54511 Hs.147054 XM_005249187 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 protein-coding 3111 chr7 11805066 11810605 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 63989 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2045 chr2 190243053 190246251 + 0 NA Intergenic Intergenic -61507 NM_032168 84128 Hs.399984 XM_005246897 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 1396 chr1 12545111 12548108 + 0 NA intron (NM_018156, intron 66 of 68) intron (NM_018156, intron 66 of 68) -20691 NR_003025 677885 Hs.721005 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 686 chr2 27936911 27941313 + 0 NA Intergenic Intergenic -52405 NM_001282731 9913 Hs.6232 XM_005264670 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H suppressor of Ty 7 (S. cerevisiae)-like protein-coding 3149 chr8 17669470 17672421 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR -12519 NM_001001925 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 1760 chr15 36881443 36884950 + 0 NA intron (NM_001130010, intron 1 of 11) Tigger12c|DNA|TcMar-Tigger 11384 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 2033 chr2 161607208 161611358 + 0 NA Intergenic Intergenic -258965 NM_002897 5937 Hs.708357 XM_005246737 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif, single stranded interacting protein 1 protein-coding 391 chr15 41420022 41421748 + 0 NA Intergenic L1MC4|LINE|L1 -12441 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 943 chr5 317256 318009 + 0 NA intron (NM_001242412, intron 1 of 10) intron (NM_001242412, intron 1 of 10) 13341 NM_001242412 57491 Hs.50823 NM_001242412 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 2676 chr1 3430785 3434716 + 0 NA intron (NM_001409, intron 5 of 36) intron (NM_001409, intron 5 of 36) 44604 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 1887 chr17 43460620 43463324 + 0 NA Intergenic L2c|LINE|L2 41040 NM_199282 201176 Hs.205326 XM_005257127 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 2907 chr19 13509435 13510769 + 0 NA intron (NM_001127221, intron 3 of 46) intron (NM_001127221, intron 3 of 46) 107172 NM_001127222 773 Hs.501632 XM_005260065 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit protein-coding 1375 chr1 147504345 147506488 + 0 NA Intergenic CpG -21085 NR_003377 728939 Hs.696575 NR_003377 ENSG00000215860 PDZK1P1 - PDZ domain containing 1 pseudogene 1 pseudo 180 chr11 34702782 34703426 + 0 NA Intergenic Intergenic 49093 NM_001206616 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 1585 chr11 68846934 68849413 + 0 NA intron (NM_139075, intron 17 of 24) intron (NM_139075, intron 17 of 24) 31823 NM_139075 219931 Hs.131851 XM_005273824 TPCN2 SHEP10|TPC2 two pore segment channel 2 protein-coding 2939 chr2 191779551 191782824 + 0 NA intron (NM_001256310, intron 7 of 14) intron (NM_001256310, intron 7 of 14) 35640 NM_014905 2744 Hs.737608 XM_005246467 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 1877 chr17 35291269 35294383 + 0 NA Intergenic CpG -1946 NM_005568 3975 Hs.443727 NM_005568 ENSG00000132130 LHX1 LIM-1|LIM1 LIM homeobox 1 protein-coding 246 chr12 46823845 46826450 + 0 NA Intergenic AluSx1|SINE|Alu -58502 NM_018976 54407 Hs.221847 XM_005268983 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38, member 2 protein-coding 2705 chr1 196552649 196555588 + 0 NA intron (NM_001287819, intron 1 of 26) intron (NM_001287819, intron 1 of 26) -2507 NR_039888 100616363 NR_039888 MIR4735 - microRNA 4735 ncRNA 2227 chr4 5051862 5057825 + 0 NA intron (NM_018401, intron 1 of 11) intron (NM_018401, intron 1 of 11) 1316 NM_018401 55351 Hs.133062 XM_005247980 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 690 chr2 28563299 28566629 + 0 NA Intergenic Intergenic -31638 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 AC093690.1 - uncharacterized LOC100505716 ncRNA 3241 chr9 113563161 113566349 + 0 NA Intergenic Intergenic 133704 NM_001166280 4593 Hs.521653 XM_005251994 ENSG00000030304 MUSK - muscle, skeletal, receptor tyrosine kinase protein-coding 1168 chr8 23206129 23207982 + 0 NA intron (NM_002318, intron 3 of 13) intron (NM_002318, intron 3 of 13) 13334 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 61 chr1 114524217 114526224 + 0 NA TTS (NM_001286353) TTS (NM_001286353) 3207 NM_001286353 56944 Hs.9315 XM_005271049 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin-like 3 protein-coding 536 chr17 39064479 39067478 + 0 NA Intergenic Intergenic -24483 NM_019010 54474 Hs.84905 XM_005257464 ENSG00000171431 KRT20 CD20|CK-20|CK20|K20|KRT21 keratin 20 protein-coding 1767 chr15 54122499 54126071 + 0 NA Intergenic MER4C|LTR|ERV1 -69210 NR_102334 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 1653 chr12 85575861 85577868 + 0 NA intron (NM_001079910, intron 24 of 26) intron (NM_001079910, intron 24 of 26) -97172 NM_006982 8092 Hs.41683 XM_005269165 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 2237 chr4 69884611 69887843 + 0 NA promoter-TSS (NM_001075).2 promoter-TSS (NM_001075).2 -114 NM_001144767 7365 Hs.201634 NM_001075 UGT2B10 UDPGT2B10 UDP glucuronosyltransferase 2 family, polypeptide B10 protein-coding 1688 chr13 109806113 109810194 + 0 NA intron (NM_015011, intron 32 of 34) intron (NM_015011, intron 32 of 34) 11498 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 RP11-54H7.3 MYO16 antisense RNA 1 ncRNA 2394 chr7 11752429 11756669 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 117275 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 1266 chr8 129139128 129140828 + 0 NA Intergenic Charlie4z|DNA|hAT-Charlie -22384 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 2654 chrX 18719860 18722557 + 0 NA intron (NM_152226, intron 3 of 17) intron (NM_152226, intron 3 of 17) 12163 NM_152224 5475 Hs.211589 XM_005274553 ENSG00000086717 PPEF1 PP7|PPEF|PPP7C|PPP7CA protein phosphatase, EF-hand calcium binding domain 1 protein-coding 2958 chr21 47479862 47481515 + 0 NA Intergenic Intergenic -37345 NM_001849 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 PP3610 collagen, type VI, alpha 2 protein-coding 1458 chr10 62714544 62719735 + 0 NA intron (NR_024554, intron 2 of 11) Tigger3b|DNA|TcMar-Tigger -13106 NM_014836 9886 Hs.737374 NM_001242359 ENSG00000072422 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 444 chr16 2478314 2479323 + 0 NA promoter-TSS (NM_001761) promoter-TSS (NM_001761) -577 NM_001761 899 Hs.1973 XM_005255659 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 508 chr17 76347109 76351314 + 0 NA Intergenic CpG 6949 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 1336 chrX 197524 199506 + 0 NA intron (NM_018390, intron 1 of 6).2 AluSx|SINE|Alu 454 NM_018390 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 39 chr1 39568368 39569640 + 0 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 19165 NM_012090 23499 Hs.692278 XM_005270694 ENSG00000127603 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 1089 chr7 74560051 74561741 + 0 NA intron (NM_001003795, intron 15 of 15) MamRep38|DNA|hAT 26906 NR_003187 654817 Hs.655201 XR_250608 ENSG00000165178 NCF1C SH3PXD1C neutrophil cytosolic factor 1C pseudogene pseudo 558 chr17 57891343 57893090 + 0 NA intron (NM_030938, intron 9 of 11) intron (NM_030938, intron 9 of 11) -26411 NR_029493 406991 Hs.444569 NR_029493 ENSG00000199004 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 12 chr1 150158735 150159713 + 0 NA Intergenic Intergenic 37054 NM_016274 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|OC120 pleckstrin homology domain containing, family O member 1 protein-coding 3200 chr8 95458607 95461028 + 0 NA intron (NM_001205262, intron 3 of 3) intron (NM_001205262, intron 3 of 3) -10637 NM_001256141 100861412 Hs.30561 NM_001256141 FSBP - fibrinogen silencer binding protein protein-coding 3036 chr4 86406588 86408367 + 0 NA intron (NM_001025616, intron 1 of 9) MER20B|DNA|hAT-Charlie 11193 NM_001025616 83478 Hs.444229 XM_005263263 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 1554 chr11 27433031 27440912 + 0 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) -52176 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 2168 chr3 12410489 12414167 + 0 NA intron (NM_015869, intron 1 of 6) intron (NM_015869, intron 1 of 6) 19327 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator-activated receptor gamma protein-coding 573 chr17 76352077 76353593 + 0 NA TTS (NM_003955) TTS (NM_003955) 3325 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 2710 chr1 219046135 219049165 + 0 NA Intergenic Intergenic 299480 NR_038845 643723 Hs.519774 NR_038845 RP11-135J2.4 - uncharacterized LOC643723 ncRNA 1084 chr7 55144856 55147851 + 0 NA intron (NM_201282, intron 1 of 15) intron (NM_201282, intron 1 of 15) 59628 NM_005228 1956 Hs.605083 XM_005271746 ENSG00000146648 EGFR ERBB|ERBB1|HER1|PIG61|mENA epidermal growth factor receptor protein-coding 638 chr19 17940558 17941680 + 0 NA intron (NM_000215, intron 22 of 23) intron (NM_000215, intron 22 of 23) -8736 NM_005543 3640 Hs.37062 NM_001265587 ENSG00000248099 INSL3 RLF|RLNL|ley-I-L insulin-like 3 (Leydig cell) protein-coding 2350 chr6 27705482 27707806 + 0 NA Intergenic AluSx|SINE|Alu -22879 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 875 chr3 87138107 87138718 + 0 NA promoter-TSS (NR_047469) promoter-TSS (NR_047469) -18 NR_047469 100846978 Hs.570649 NR_047469 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 2479 chr8 129127384 129143306 + 0 NA Intergenic C-rich|Low_complexity|Low_complexity -27017 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 1522 chr11 32455483 32457740 + 0 NA promoter-TSS (NR_023920) promoter-TSS (NR_023920) 470 NM_024424 7490 Hs.591980 XM_005253120 ENSG00000184937 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 1 chr12 111862446 111864854 + 0 NA intron (NM_005475, intron 2 of 7) intron (NM_005475, intron 2 of 7) 19898 NM_005475 10019 Hs.506784 XM_005253818 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 3218 chr8 129551412 129553492 + 0 NA Intergenic Intergenic 390090 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 506 chr17 53509707 53512111 + 0 NA Intergenic Intergenic -11568 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 136 chr10 101519743 101521615 + 0 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -21784 NM_000392 1244 Hs.368243 XM_005269536 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP-binding cassette, sub-family C (CFTR/MRP), member 2 protein-coding 116 chr10 34696027 34696672 + 0 NA intron (NM_001184790, intron 4 of 22) LTR87|LTR|ERVL? 407904 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1197 chr8 32167066 32167666 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -130896 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 1580 chr11 66102481 66106271 + 0 NA promoter-TSS (NM_004292) promoter-TSS (NM_004292) -376 NM_004292 9610 Hs.1030 XM_005274410 ENSG00000174791 RIN1 - Ras and Rab interactor 1 protein-coding 2937 chr2 179302989 179304124 + 0 NA intron (NM_003690, intron 6 of 7) AluY|SINE|Alu 11799 NM_001139518 8575 Hs.570274 XM_005246921 ENSG00000180228 PRKRA DYT16|PACT|RAX protein kinase, interferon-inducible double stranded RNA dependent activator protein-coding 2419 chr7 95125696 95134503 + 0 NA intron (NM_145872, intron 2 of 2) intron (NM_145872, intron 2 of 2) 14886 NM_145872 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 2146 chr3 9912106 9914136 + 0 NA intron (NM_001199551, intron 3 of 6) AluJo|SINE|Alu 7375 NM_001199623 63924 Hs.567562 XM_005265373 ENSG00000187288 CIDEC CIDE-3|CIDE3|FPLD5|FSP27 cell death-inducing DFFA-like effector c protein-coding 661 chr19 49074033 49076902 + 0 NA intron (NM_177973, intron 1 of 6) intron (NM_177973, intron 1 of 6) -3526 NM_004605 6820 Hs.369331 XM_005259182 ENSG00000088002 SULT2B1 HSST2 sulfotransferase family, cytosolic, 2B, member 1 protein-coding 3157 chr8 25093904 25097509 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 53419 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2845 chr16 15677037 15679625 + 0 NA intron (NM_033201, intron 5 of 5) AluY|SINE|Alu 26621 NR_106761 102465252 NR_106761 MIR6506 hsa-mir-6506 microRNA mir-6506 ncRNA 2482 chr8 129595186 129599527 + 0 NA Intergenic Intergenic 434994 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 2719 chr10 13704385 13708160 + 0 NA intron (NM_018027, intron 18 of 24) intron (NM_018027, intron 18 of 24) 77333 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 1935 chr19 8633398 8636920 + 0 NA intron (NM_012335, intron 1 of 27) AluSx|SINE|Alu 7172 NM_012335 4542 Hs.465818 XM_005272475 ENSG00000142347 MYO1F - myosin IF protein-coding 2690 chr1 98675219 98677204 + 0 NA promoter-TSS (NR_046088) promoter-TSS (NR_046088) -56 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 RP5-1070A16.1 - uncharacterized LOC729987 ncRNA 581 chr17 79372842 79374285 + 0 NA promoter-TSS (NM_001080519) promoter-TSS (NM_001080519) 23 NM_001080519 57597 Hs.514580 NM_001080519 ENSG00000171282 BAHCC1 BAHD2 BAH domain and coiled-coil containing 1 protein-coding 2727 chr10 33597866 33599664 + 0 NA intron (NM_001244972, intron 2 of 16) intron (NM_001244972, intron 2 of 16) 25068 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 308 chr12 116934190 116935646 + 0 NA Intergenic Intergenic -36309 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 678 chr2 191708521 191713420 + 0 NA Intergenic Intergenic -34577 NM_001256310 2744 Hs.737608 XM_005246467 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 1517 chr11 1847369 1852696 + 0 NA Intergenic Intergenic -5642 NM_138567 90019 Hs.161031 XM_005253216 ENSG00000149043 SYT8 - synaptotagmin VIII protein-coding 2808 chr14 54778410 54780049 + 0 NA Intergenic Intergenic -84444 NM_001130851 1033 Hs.84113 XM_005267257 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin-dependent kinase inhibitor 3 protein-coding 3025 chr4 5135185 5137167 + 0 NA intron (NM_018401, intron 1 of 11) MSTD|LTR|ERVL-MaLR 82649 NM_018401 55351 Hs.133062 XM_005247980 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 3004 chr3 126724504 126726439 + 0 NA intron (NM_032242, intron 7 of 30) intron (NM_032242, intron 7 of 30) 18034 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 1975 chr19 48841662 48849499 + 0 NA intron (NM_018273, intron 6 of 7) GA-rich|Low_complexity|Low_complexity 16951 NM_001425 2014 Hs.9999 NM_001425 ENSG00000142227 EMP3 YMP epithelial membrane protein 3 protein-coding 2910 chr19 37959537 37961020 + 0 NA 5' UTR (NM_144694, exon 1 of 5) 5' UTR (NM_144694, exon 1 of 5) 296 NM_144694 148268 Hs.350875 XM_005258565 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 1973 chr19 46430188 46431991 + 0 NA Intergenic LTR67B|LTR|ERVL -13053 NM_001029861 339345 Hs.434218 NM_001029861 ENSG00000188425 NANOS2 NOS2 nanos homolog 2 (Drosophila) protein-coding 1991 chr2 127974805 127978631 + 0 NA Intergenic CpG -13375 NM_001001665 339761 Hs.407639 XM_005263658 ENSG00000186684 CYP27C1 - cytochrome P450, family 27, subfamily C, polypeptide 1 protein-coding 3027 chr4 8304428 8306527 + 0 NA intron (NM_053044, intron 7 of 8) intron (NM_053044, intron 7 of 8) 33988 NM_053044 94031 Hs.479119 XM_005248040 ENSG00000170801 HTRA3 Prsp|Tasp HtrA serine peptidase 3 protein-coding 927 chr4 95972270 95974453 + 0 NA intron (NM_001256793, intron 1 of 10) intron (NM_001256793, intron 1 of 10) 531 NM_001256793 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 301 chr12 110694117 110695555 + 0 NA Intergenic Intergenic -24196 NM_001681 488 Hs.506759 XM_005253887 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 protein-coding 3180 chr8 63145910 63148737 + 0 NA Intergenic Intergenic -14178 NM_173688 286183 Hs.654662 XM_005251216 NKAIN3 FAM77D Na+/K+ transporting ATPase interacting 3 protein-coding 2302 chr5 55775830 55778377 + 0 NA intron (NR_104664, intron 1 of 4) CpG 493 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 51 chr1 98497704 98498233 + 0 NA intron (NR_046105, intron 3 of 4) MER5A|DNA|hAT-Charlie 12939 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 1758 chr15 36718720 36722957 + 0 NA Intergenic Intergenic -150974 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 1822 chr16 15668406 15671624 + 0 NA intron (NM_033201, intron 3 of 5) AluSc8|SINE|Alu 34937 NR_106761 102465252 NR_106761 MIR6506 hsa-mir-6506 microRNA mir-6506 ncRNA 456 chr16 15582108 15585980 + 0 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) -12079 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 3063 chr5 55146350 55148439 + 0 NA 5' UTR (NM_001242637, exon 1 of 16) 5' UTR (NM_001242637, exon 1 of 16) 187 NM_001242637 133396 Hs.55378 XM_005248427 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 2745 chr11 11471613 11474560 + 0 NA intron (NM_198516, intron 1 of 10) intron (NM_198516, intron 1 of 10) -98182 NM_001256686 283106 Hs.741126 NR_002207 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 652 chr19 45299182 45300713 + 0 NA intron (NM_012116, intron 9 of 10) intron (NM_012116, intron 9 of 10) -12369 NM_005581 4059 Hs.625725 NM_001013257 ENSG00000187244 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 1033 chr6 34203879 34207238 + 0 NA intron (NM_145899, intron 2 of 5) CpG-22033 908 NM_145902 3159 Hs.703764 XM_005249059 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 2736 chr11 16904405 16917750 + 0 NA intron (NM_175058, intron 3 of 22) AluJb|SINE|Alu 124886 NM_175058 144100 Hs.12332 XM_005252801 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing, family A member 7 protein-coding 2400 chr7 11866046 11874491 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 1556 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2258 chr4 124425961 124427636 + 0 NA Intergenic CpG 106153 NM_005841 10252 Hs.744854 XM_005262686 ENSG00000164056 SPRY1 hSPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) protein-coding 2034 chr2 165369291 165373612 + 0 NA intron (NM_004490, intron 6 of 13) L1PB1|LINE|L1 106909 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 1539 chr11 317823 319823 + 0 NA TTS (NM_021034) TTS (NM_021034) 2091 NR_049759 10410 Hs.374650 NM_021034 ENSG00000142089 IFITM3 1-8U|DSPA2b|IP15 interferon induced transmembrane protein 3 protein-coding 2029 chr2 153257720 153260765 + 0 NA intron (NM_052905, intron 1 of 25) L1MC3|LINE|L1 67491 NM_052905 114793 Hs.654630 XM_005246263 ENSG00000157827 FMNL2 FHOD2 formin-like 2 protein-coding 796 chr21 17942396 17944052 + 0 NA intron (NR_027791, intron 5 of 5) L1MA3|LINE|L1 -19333 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2 microRNA 125b-2 ncRNA 2349 chr6 27519436 27522071 + 0 NA Intergenic L1MD2|LINE|L1 -79856 NM_007149 7738 Hs.158174 XM_005249379 ENSG00000096654 ZNF184 - zinc finger protein 184 protein-coding 366 chr14 102094763 102095608 + 0 NA Intergenic CpG 67497 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 deiodinase, iodothyronine, type III protein-coding 844 chr3 158449320 158451114 + 0 NA promoter-TSS (NM_002888) promoter-TSS (NM_002888) 58 NM_002888 5918 Hs.131269 XM_005247686 ENSG00000118849 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 1541 chr11 404826 408077 + 0 NA exon (NM_001135054, exon 9 of 10) exon (NM_001135054, exon 9 of 10) 8548 NM_001135054 59307 Hs.501624 XM_005253044 ENSG00000185187 SIGIRR TIR8 single immunoglobulin and toll-interleukin 1 receptor (TIR) domain protein-coding 2723 chr10 33468588 33470198 + 0 NA intron (NM_001244972, intron 16 of 16) intron (NM_001244972, intron 16 of 16) 154440 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 272 chr12 63095248 63098222 + 0 NA intron (NM_020700, intron 6 of 9) MIRc|SINE|MIR 99269 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 2343 chr6 2501713 2505561 + 0 NA Intergenic MIRc|SINE|MIR 131661 NM_152554 154386 Hs.680574 NM_152554 C6orf195 RP11-145H9.2|bA145H9.2 chromosome 6 open reading frame 195 protein-coding 775 chr20 46141358 46143826 + 0 NA intron (NM_181659, intron 1 of 22) L1ME3A|LINE|L1 11991 NM_001174088 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 2518 chr8 29320712 29323539 + 0 NA Intergenic L1MB4|LINE|L1 -113858 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 3044 chr4 166423205 166425788 + 0 NA Intergenic Intergenic 117102 NR_030304 693163 NR_030304 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 2108 chr22 24575099 24581666 + 0 NA intron (NM_019601, intron 1 of 14) intron (NM_019601, intron 1 of 14) 938 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 20 chr1 3427035 3427622 + 0 NA intron (NM_001409, intron 10 of 36) intron (NM_001409, intron 10 of 36) 50026 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 2376 chr7 11667089 11684957 + 0 NA exon (NM_015204, exon 2 of 27) exon (NM_015204, exon 2 of 27) 195801 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 888 chr3 148994806 148995766 + 0 NA Intergenic Intergenic -55454 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 1983 chr2 47315079 47317288 + 0 NA intron (NM_001163561, intron 6 of 6) MamRep605|Unknown|Unknown 66334 NM_173649 285051 Hs.531575 NM_001163561 ENSG00000239605 C2orf61 - chromosome 2 open reading frame 61 protein-coding 1011 chr6 12592512 12593669 + 0 NA Intergenic Intergenic -123947 NM_001242648 221692 Hs.436996 XM_005248933 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 3100 chr7 37452298 37457009 + 0 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) 33902 NM_014800 9844 Hs.656638 XM_005249919 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 1754 chr15 90354662 90359127 + 0 NA intron (NM_001150, intron 1 of 20) intron (NM_001150, intron 1 of 20) 1178 NM_001150 290 Hs.1239 XM_005254892 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl (membrane) aminopeptidase protein-coding 1627 chr12 718726 720271 + 0 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 53257 NM_016533 4815 Hs.656450 XM_005253689 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 1161 chr8 19472038 19472961 + 0 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) -12443 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 468 chr16 21830829 21832435 + 0 NA Intergenic CpG -1137 NR_003370 730092 Hs.348979 NR_003370 RRN3P1 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 pseudo 2093 chr20 57924788 57927846 + 0 NA Intergenic Intergenic 50818 NM_207032 1908 Hs.1408 XM_005260312 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 3030 chr4 39816237 39819340 + 0 NA Intergenic AluY|SINE|Alu 118124 NM_001111112 3093 Hs.50308 XM_005262653 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin-conjugating enzyme E2K protein-coding 1019 chr6 26187928 26190640 + 0 NA promoter-TSS (NM_003539) promoter-TSS (NM_003539) 20 NM_003539 8360 Hs.248179 NM_003539 ENSG00000188987 HIST1H4D H4/b|H4FB|dJ221C16.9 histone cluster 1, H4d protein-coding 700 chr2 43268508 43269607 + 0 NA Intergenic Intergenic 184688 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 1927 chr18 55112244 55114695 + 0 NA intron (NM_004852, intron 1 of 1) intron (NM_004852, intron 1 of 1) 10552 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 78 chr1 218878484 218881076 + 0 NA Intergenic Intergenic -360760 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 RP11-224O19.2 - uncharacterized LOC728463 ncRNA 2853 chr16 58492259 58495505 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -3667 NM_020465 65009 Hs.322430 NM_001130487 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 1380 chr1 193674483 193679240 + 0 NA Intergenic Intergenic -521118 NM_003783 8707 Hs.518834 NM_003783 ENSG00000162630 B3GALT2 BETA3GALT2|GLCT2|beta3Gal-T2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 990 chr5 142184637 142186031 + 0 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 35042 NM_001135608 23092 Hs.654668 XM_005268398 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 413 chr15 71747662 71749210 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -91105 NM_001286429 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 294 chr12 90218564 90220335 + 0 NA Intergenic Intergenic 116717 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 RP11-591N1.1 long intergenic non-protein coding RNA 936 ncRNA 2316 chr5 100175740 100178526 + 0 NA intron (NM_005668, intron 4 of 4) MER51B|LTR|ERV1 61856 NM_005668 7903 Hs.308628 XM_005272078 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 2218 chr4 75592629 75597265 + 0 NA Intergenic Intergenic 114318 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 1614 chr12 63254156 63262978 + 0 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 70098 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 1442 chr1 242373296 242376304 + 0 NA intron (NM_152666, intron 6 of 10) LTR22B|LTR|ERVK -212415 NM_001004343 440738 Hs.534971 XM_005273139 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule-associated protein 1 light chain 3 gamma protein-coding 764 chr20 32977488 32979433 + 0 NA intron (NM_031483, intron 2 of 24) AluSx|SINE|Alu 27419 NM_031483 83737 Hs.632272 XM_005260569 ENSG00000078747 ITCH AIF4|AIP4|NAPP1|dJ468O1.1 itchy E3 ubiquitin protein ligase protein-coding 349 chr14 50154015 50155452 + 0 NA intron (NM_001197331, intron 1 of 16) intron (NM_001197331, intron 1 of 16) 365 NM_002692 5427 Hs.162777 NM_001197330 ENSG00000100479 POLE2 DPE2 polymerase (DNA directed), epsilon 2, accessory subunit protein-coding 1743 chr15 33570589 33572835 + 0 NA Intergenic LTR81A|LTR|Gypsy -31465 NM_001036 6263 Hs.709373 XM_005254587 ENSG00000198838 RYR3 - ryanodine receptor 3 protein-coding 2075 chr20 10227838 10235510 + 0 NA intron (NM_130811, intron 1 of 7) Tigger3a|DNA|TcMar-Tigger -31520 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 3251 chrX 48354580 48357954 + 0 NA Intergenic Intergenic -11080 NM_022825 64840 Hs.386453 XM_005272635 ENSG00000102312 PORCN DHOF|FODH|MG61|PORC|PPN porcupine homolog (Drosophila) protein-coding 1981 chr19 55657354 55659509 + 0 NA intron (NM_003283, intron 2 of 13) intron (NM_003283, intron 2 of 13) 2175 NM_001126132 7138 Hs.631558 XM_005259188 ENSG00000105048 TNNT1 ANM|NEM5|STNT|TNT|TNTS troponin T type 1 (skeletal, slow) protein-coding 3205 chr8 101893651 101894996 + 0 NA Intergenic LTR18B|LTR|ERVL 68476 NM_001135702 7534 Hs.492407 XM_005251060 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 2081 chr20 45826408 45831920 + 0 NA Intergenic AluSx|SINE|Alu 33555 NR_037410 100500814 NR_037410 MIR3616 - microRNA 3616 ncRNA 1383 chr1 242384038 242387142 + 0 NA intron (NM_152666, intron 5 of 10) MLT1C|LTR|ERVL-MaLR -223205 NM_001004343 440738 Hs.534971 XM_005273139 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule-associated protein 1 light chain 3 gamma protein-coding 606 chr19 5176708 5177848 + 0 NA Intergenic AluJb|SINE|Alu 163536 NM_002850 5802 Hs.744928 XM_005259600 ENSG00000105426 PTPRS PTPSIGMA protein tyrosine phosphatase, receptor type, S protein-coding 137 chr10 112289359 112291265 + 0 NA Intergenic Intergenic 32687 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 1414 chr1 64194212 64199375 + 0 NA Intergenic AluJb|SINE|Alu -42897 NM_005012 4919 Hs.128753 NM_001083592 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 2522 chr8 29812966 29816920 + 0 NA promoter-TSS (NR_036104) promoter-TSS (NR_036104) -79 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 - microRNA 3148 ncRNA 1855 chr17 15810147 15827723 + 0 NA Intergenic MLT2B1|LTR|ERVL -29296 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 666 chr19 54392591 54393339 + 0 NA exon (NM_002739, exon 4 of 18) exon (NM_002739, exon 4 of 18) 7498 NM_002739 5582 Hs.631564 XM_005259054 ENSG00000126583 PRKCG PKC-gamma|PKCC|PKCG|SCA14 protein kinase C, gamma protein-coding 432 chr16 30209368 30212720 + 0 NA intron (NM_177552, intron 1 of 7).2 AluJr|SINE|Alu 495 NM_177552 6818 Hs.460558 NM_177552 ENSG00000261052 SULT1A3 HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 protein-coding 1074 chr7 37001352 37003038 + 0 NA intron (NM_014800, intron 16 of 21) intron (NM_014800, intron 16 of 21) 22522 NM_001039459 9844 Hs.656638 XM_005249919 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 860 chr3 30619313 30620887 + 0 NA Intergenic MER72B|LTR|ERV1 -27894 NM_001024847 7048 Hs.604277 NM_001024847 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 2308 chr5 76372447 76374100 + 0 NA exon (NM_032367, exon 3 of 3) exon (NM_032367, exon 3 of 3) 3123 NR_003014 677828 Hs.693249 NR_003014 ENSG00000238961 SNORA47 HBI-115 small nucleolar RNA, H/ACA box 47 snoRNA 1567 chr11 47951253 47954335 + 0 NA Intergenic AluY|SINE|Alu -49316 NM_001098503 5795 Hs.318547 XM_005253038 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 1063 chr7 2902743 2904068 + 0 NA Intergenic LTR78B|LTR|ERV1 -19446 NM_007353 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 1776 chr15 71427625 71432172 + 0 NA Intergenic MER112|DNA|hAT-Charlie -3890 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 2565 chr8 122651292 122655409 + 0 NA 5' UTR (NM_005328, exon 1 of 4) 5' UTR (NM_005328, exon 1 of 4) 280 NM_005328 3037 Hs.159226 XM_005250900 HAS2 - hyaluronan synthase 2 protein-coding 3047 chr4 175303761 175305643 + 0 NA Intergenic LTR5_Hs|LTR|ERVK -40244 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 2158 chr3 118922592 118934670 + 0 NA Intergenic AluSx|SINE|Alu 31121 NM_003778 8702 Hs.13225 XM_005247855 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 protein-coding 2576 chr8 129060098 129064759 + 0 NA TTS (NR_031612) TTS (NR_031612) 1030 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 2415 chr7 83651278 83656047 + 0 NA intron (NM_006080, intron 6 of 16) AluSz6|SINE|Alu 170555 NM_006080 10371 Hs.252451 XM_005250110 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 2362 chr6 73330825 73334495 + 0 NA intron (NM_001160133, intron 1 of 14) CpG 1089 NM_001160134 56479 Hs.445324 XM_005248734 ENSG00000185760 KCNQ5 Kv7.5 potassium voltage-gated channel, KQT-like subfamily, member 5 protein-coding 708 chr2 69960214 69963277 + 0 NA Intergenic MER87|LTR|ERV1 -7382 NM_001153 307 Hs.422986 XM_005264277 ENSG00000196975 ANXA4 ANX4|PIG28|ZAP36 annexin A4 protein-coding 2583 chr8 134141108 134144197 + 0 NA intron (NM_003235, intron 45 of 47) MLT1D|LTR|ERVL-MaLR -27342 NM_001282964 6503 Hs.75367 XM_005251026 ENSG00000155926 SLA SLA1|SLAP Src-like-adaptor protein-coding 2796 chr13 67642392 67646252 + 0 NA intron (NM_203487, intron 2 of 4) intron (NM_203487, intron 2 of 4) 79304 NR_046637 100874087 Hs.606903 NR_046637 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 2589 chr8 134845349 134848861 + 0 NA Intergenic Intergenic -262922 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1601 chr11 94473331 94475130 + 0 NA Intergenic CpG -27278 NM_130847 154810 Hs.503594 XM_005273798 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 2814 chr14 77525311 77526799 + 0 NA Intergenic Intergenic -31013 NM_024496 64207 Hs.745194 NM_024496 ENSG00000119669 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 710 chr2 72011443 72012309 + 0 NA Intergenic Intergenic 318044 NM_001130987 8291 Hs.252180 XM_005264584 ENSG00000135636 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 1656 chr12 90217434 90220861 + 0 NA Intergenic L1M6|LINE|L1 116415 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 RP11-591N1.1 long intergenic non-protein coding RNA 936 ncRNA 323 chr13 83471512 83473629 + 0 NA Intergenic Intergenic 983958 NM_001281503 114798 Hs.694617 NM_001281503 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK-like family, member 1 protein-coding 856 chr3 24405980 24407385 + 0 NA intron (NM_001128176, intron 1 of 10) intron (NM_001128176, intron 1 of 10) -128896 NR_046244 644990 Hs.631912 XR_245154 THRB-AS1 - THRB antisense RNA 1 ncRNA 2142 chr3 8780976 8784324 + 0 NA intron (NM_001234, intron 1 of 2) intron (NM_001234, intron 1 of 2) 7164 NM_001234 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 1834 chr16 51571846 51574334 + 0 NA Intergenic Intergenic -387907 NM_002968 6299 Hs.135787 NM_001127892 ENSG00000103449 SALL1 HSAL1|Sal-1|TBS|ZNF794 spalt-like transcription factor 1 protein-coding 1664 chr12 114209951 114212307 + 0 NA intron (NR_110026, intron 1 of 2) intron (NR_110026, intron 1 of 2) 359 NR_110026 100506465 Hs.211461 XR_109132 ENSG00000249550 RP11-438N16.1 - uncharacterized LOC100506465 ncRNA 112 chr10 33540960 33542742 + 0 NA intron (NM_001244972, intron 6 of 16) intron (NM_001244972, intron 6 of 16) 81982 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 3211 chr8 119355161 119357171 + 0 NA intron (NR_109794, intron 4 of 4) MIRb|SINE|MIR -232108 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 545 chr17 43461420 43463248 + 0 NA Intergenic Intergenic 40678 NM_199282 201176 Hs.205326 XM_005257127 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 191 chr11 57208221 57209330 + 0 NA Intergenic MER57F|LTR|ERV1 -13722 NM_017611 29015 Hs.99962 XM_005273942 ENSG00000134802 SLC43A3 EEG1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43, member 3 protein-coding 2733 chr10 65313046 65314574 + 0 NA intron (NM_001001330, intron 1 of 7) AluY|SINE|Alu 32687 NM_001001330 221035 Hs.499833 XM_005269620 ENSG00000165476 REEP3 C10orf74 receptor accessory protein 3 protein-coding 2467 chr8 67032377 67044233 + 0 NA promoter-TSS (NM_184087) promoter-TSS (NM_184087) -973 NM_184087 84675 Hs.85524 XM_005251316 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 187 chr11 47952129 47953991 + 0 NA Intergenic Intergenic -49050 NM_001098503 5795 Hs.318547 XM_005253038 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 588 chr18 7913618 7917687 + 0 NA intron (NM_002845, intron 4 of 30) MIR|SINE|MIR 348338 NM_001105244 5797 Hs.49774 XM_005258128 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type, M protein-coding 1684 chr13 95766188 95769930 + 0 NA intron (NM_001105515, intron 20 of 20) intron (NM_001105515, intron 20 of 20) 185628 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 756 chr20 5704346 5706863 + 0 NA Intergenic Intergenic -25439 NM_152504 149840 Hs.529340 NM_152504 ENSG00000171984 C20orf196 - chromosome 20 open reading frame 196 protein-coding 2326 chr5 178211323 178217195 + 0 NA Intergenic Intergenic -10982 NR_024035 729522 Hs.382790 NR_024035 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 1283 chr8 142047282 142049173 + 0 NA Intergenic Intergenic -36815 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 262 chr12 32086501 32087511 + 0 NA Intergenic Intergenic -25347 NM_018169 55196 Hs.445129 XM_005253405 ENSG00000174718 KIAA1551 C12orf35 KIAA1551 protein-coding 1944 chr19 48772399 48777415 + 0 NA intron (NM_153608, intron 1 of 4) intron (NM_153608, intron 1 of 4) 253 NM_153608 163071 Hs.511883 XM_005258579 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 3089 chr6 94488566 94490252 + 0 NA Intergenic Intergenic 72608 NR_015362 643432 Hs.509936 XR_241850 TSG1 - tumor suppressor TSG1 ncRNA 212 chr11 65678957 65679956 + 0 NA Intergenic Intergenic 7075 NM_031450 83638 Hs.433573 NM_001135635 ENSG00000175573 C11orf68 BLES03|P5326 chromosome 11 open reading frame 68 protein-coding 2436 chr8 19265292 19267709 + 0 NA intron (NR_024040, intron 8 of 9) intron (NR_024040, intron 8 of 9) 95013 NM_001174159 63898 Hs.303208 NM_001174159 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 1331 chr9 139422130 139423568 + 0 NA intron (NM_017617, intron 2 of 33) G-rich|Low_complexity|Low_complexity -8771 NR_039820 100616242 NR_039820 MIR4673 - microRNA 4673 ncRNA 2590 chr8 134862534 134865255 + 0 NA Intergenic Helitron1Na_Mam|RC|Helitron -279711 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 2383 chr7 76246562 76253451 + 0 NA intron (NM_152992, intron 3 of 4) AluSq2|SINE|Alu 6614 NM_152992 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 542 chr17 41621957 41624516 + 0 NA promoter-TSS (NM_001261438) promoter-TSS (NM_001261438) 69 NM_001986 2118 Hs.434059 XM_005257142 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ets variant 4 protein-coding 3114 chr7 37752143 37754432 + 0 NA Intergenic Intergenic -26709 NM_181791 353345 Hs.688230 XM_005249744 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 1305 chr9 43375580 43377136 + 0 NA Intergenic L1P4b|LINE|L1 -230874 NR_027472 642929 Hs.584288 NR_027472 RP11-327I22.6 - general transcription factor II, i pseudogene pseudo 961 chr5 55574835 55576230 + 0 NA Intergenic Intergenic -46346 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 2686 chr1 92361594 92364036 + 0 NA intron (NM_001195684, intron 2 of 17) intron (NM_001195684, intron 2 of 17) 8744 NM_001195684 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 3234 chr9 38891968 38894147 + 0 NA Intergenic Intergenic 271972 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201, member A ncRNA 2882 chr18 8664951 8666489 + 0 NA Intergenic L1MB8|LINE|L1 -51649 NM_015210 23255 Hs.707920 XM_005258098 ENSG00000168502 SOGA2 CCDC165|KIAA0802|MTCL1 SOGA family member 2 protein-coding 2099 chr21 17941633 17944561 + 0 NA intron (NR_027791, intron 5 of 5) intron (NR_027791, intron 5 of 5) -19460 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2 microRNA 125b-2 ncRNA 1662 chr12 109627344 109632432 + 0 NA intron (NM_001093, intron 14 of 51) intron (NM_001093, intron 14 of 51) 52686 NM_001093 32 Hs.234898 XM_005253876 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 2476 chr8 129072233 129083953 + 0 NA intron (NR_003367, intron 4 of 7) intron (NR_003367, intron 4 of 7) 16695 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 2988 chr3 45244796 45247025 + 0 NA Intergenic Intergenic 21904 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 574 chr17 76354839 76357176 + 0 NA 5' UTR (NM_003955, exon 1 of 2) 5' UTR (NM_003955, exon 1 of 2) 153 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 170 chr11 12203772 12205420 + 0 NA intron (NM_001282663, intron 3 of 27) intron (NM_001282663, intron 3 of 27) 19366 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA mir-6124 ncRNA 1921 chr18 21272790 21277495 + 0 NA intron (NM_198129, intron 1 of 74) MLT1C|LTR|ERVL-MaLR 5580 NM_001127717 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 660 chr19 48989372 48994660 + 0 NA intron (NM_001080434, intron 15 of 15) AluSp|SINE|Alu 19551 NM_017457 9266 Hs.144011 NM_004228 ENSG00000105443 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like cytohesin 2 protein-coding 3217 chr8 129369411 129371459 + 0 NA Intergenic Intergenic 208073 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 26 chr1 9448127 9449571 + 0 NA Intergenic Intergenic 40126 NR_104623 100506022 Hs.568596 XR_109872 LOC100506022 - uncharacterized LOC100506022 ncRNA 2116 chr22 21457054 21459173 + 0 NA intron (NR_037566, intron 1 of 5) intron (NR_037566, intron 1 of 5) 808 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 breakpoint cluster region pseudogene 2 pseudo 977 chr5 80258357 80262108 + 0 NA intron (NM_006909, intron 1 of 26) intron (NM_006909, intron 1 of 26) -3506 NR_105015 102524628 Hs.737159 NG_030334 LOC102524628 - uncharacterized LOC102524628 ncRNA 2250 chr4 95885301 95892955 + 0 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -28255 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 566 chr17 73100595 73101998 + 0 NA intron (NM_004695, intron 6 of 6) intron (NM_004695, intron 6 of 6) -4786 NM_024585 79637 Hs.413047 XM_005257667 ENSG00000125449 ARMC7 - armadillo repeat containing 7 protein-coding 526 chr17 19111675 19114505 + 0 NA Intergenic AluSq10|SINE|Alu -27600 NM_014964 22905 Hs.743983 XM_005256538 ENSG00000072134 EPN2 EHB21 epsin 2 protein-coding 1901 chr17 76209696 76212901 + 0 NA intron (NM_001012270, intron 2 of 2) AluSx|SINE|Alu 1021 NM_001012270 332 Hs.744872 XR_243654 ENSG00000089685 BIRC5 API4|EPR-1 baculoviral IAP repeat containing 5 protein-coding 359 chr14 93066197 93067537 + 0 NA intron (NM_024832, intron 3 of 9) intron (NM_024832, intron 3 of 9) 86742 NM_024832 79890 Hs.326822 XM_005268074 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 2765 chr11 75293945 75295245 + 0 NA Intergenic CpG 21494 NM_001235 871 Hs.596449 XM_005274370 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) protein-coding 1229 chr8 67782494 67783562 + 0 NA promoter-TSS (NM_001136161) promoter-TSS (NM_001136161) 44 NM_001136161 157777 Hs.437006 XM_005251173 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 2299 chr5 55564787 55568105 + 0 NA Intergenic Intergenic -37260 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 108 chr10 33417291 33419972 + 0 NA Intergenic Intergenic -171338 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 2820 chr14 101920067 101921567 + 0 NA Intergenic Intergenic 101196 NR_002770 64150 Hs.745484 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 604 chr19 10222933 10223649 + 0 NA intron (NM_002566, intron 1 of 1) intron (NM_002566, intron 1 of 1) 1094 NM_002566 5032 Hs.14468 NM_002566 ENSG00000244165 P2RY11 P2Y11 purinergic receptor P2Y, G-protein coupled, 11 protein-coding 2614 chr9 41816351 41827290 + 0 NA Intergenic MER6C|DNA|TcMar-Tigger 133256 NR_015363 389741 Hs.733665 XR_246681 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 2608 chr9 132231251 132235938 + 0 NA Intergenic Intergenic -17345 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 1001 chr5 180590493 180592295 + 0 NA Intergenic Intergenic 9451 NM_206880 285659 Hs.553681 NM_206880 ENSG00000182613 OR2V2 OR2V3|OST713 olfactory receptor, family 2, subfamily V, member 2 protein-coding 232 chr11 76534374 76535369 + 0 NA Intergenic MIRc|SINE|MIR -37046 NM_018367 55331 Hs.23862 XM_005274086 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 477 chr16 54481588 54482862 + 0 NA Intergenic Intergenic -161847 NM_024336 79191 Hs.499205 XM_005256139 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 1338 chrX 18720252 18721415 + 0 NA intron (NM_152226, intron 3 of 17) intron (NM_152226, intron 3 of 17) 11788 NM_152224 5475 Hs.211589 XM_005274553 ENSG00000086717 PPEF1 PP7|PPEF|PPP7C|PPP7CA protein phosphatase, EF-hand calcium binding domain 1 protein-coding 3054 chr5 28621881 28626733 + 0 NA Intergenic L1MEf|LINE|L1 -302670 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 2623 chr9 84222128 84226196 + 0 NA intron (NM_005077, intron 14 of 19) AluSx|SINE|Alu 79434 NM_005077 7088 Hs.689805 XM_005252151 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 1182 chr8 27631974 27633209 + 0 NA intron (NM_001017420, intron 1 of 10) intron (NM_001017420, intron 1 of 10) 533 NM_001017420 157570 Hs.99480 XM_005273419 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|RBS establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 225 chr11 69460947 69462245 + 0 NA intron (NM_053056, intron 3 of 4) intron (NM_053056, intron 3 of 4) 5723 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 1447 chr10 13202610 13205545 + 0 NA intron (NM_182751, intron 1 of 19) intron (NM_182751, intron 1 of 19) 523 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43 minichromosome maintenance complex component 10 protein-coding 330 chr13 109806553 109810098 + 0 NA intron (NM_015011, intron 32 of 34) intron (NM_015011, intron 32 of 34) 11326 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 RP11-54H7.3 MYO16 antisense RNA 1 ncRNA 142 chr10 128146816 128149492 + 0 NA intron (NM_001004298, intron 5 of 8) intron (NM_001004298, intron 5 of 8) -37706 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 RP11-422P15.3 long intergenic non-protein coding RNA 601 ncRNA 207 chr11 64350212 64351556 + 0 NA Intergenic Intergenic -7398 NM_144585 116085 Hs.700182 XM_005273740 ENSG00000197891 SLC22A12 OAT4L|RST|URAT1 solute carrier family 22 (organic anion/urate transporter), member 12 protein-coding 1510 chr11 12187674 12189931 + 0 NA intron (NM_001282663, intron 3 of 27) intron (NM_001282663, intron 3 of 27) 3572 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA mir-6124 ncRNA 48 chr1 92201940 92203476 + 0 NA intron (NR_036634, intron 5 of 17) intron (NR_036634, intron 5 of 17) 149128 NM_003243 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 1857 chr17 33699526 33702350 + 0 NA promoter-TSS (NM_152270) promoter-TSS (NM_152270) -218 NM_152270 91607 Hs.745059 XM_005258067 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 360 chr14 93195857 93196760 + 0 NA intron (NM_001008530, intron 3 of 14) intron (NM_001008530, intron 3 of 14) 18739 NM_001008530 5641 Hs.18069 XM_005267862 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 3170 chr8 48295090 48298039 + 0 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 123094 NM_001080394 23514 Hs.381058 XM_005251189 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 3160 chr8 29261877 29264739 + 0 NA Intergenic L1PA16|LINE|L1 -55041 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 2321 chr5 142611278 142616184 + 0 NA Intergenic MIR|SINE|MIR 169523 NM_001024094 2908 Hs.122926 XM_005268419 ENSG00000113580 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 1988 chr2 69790238 69798753 + 0 NA intron (NM_014911, intron 2 of 21) L2b|LINE|L2 -47192 NR_003705 100124535 Hs.693447 NR_003705 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 3135 chr8 17742820 17745540 + 0 NA intron (NM_004467, intron 1 of 7) AluSx1|SINE|Alu 8733 NM_147203 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 1076 chr7 44010091 44010759 + 0 NA intron (NR_003655, intron 9 of 15) intron (NR_003655, intron 9 of 15) -30064 NM_175064 285955 Hs.645483 XM_005249718 ENSG00000136206 SPDYE1 Ringo1|SPDYE|WBSCR19 speedy/RINGO cell cycle regulator family member E1 protein-coding 3082 chr6 17466307 17468184 + 0 NA intron (NM_006366, intron 4 of 12) intron (NM_006366, intron 4 of 12) 73509 NM_006366 10486 Hs.132902 XM_005248801 ENSG00000112186 CAP2 - CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding 766 chr20 34054851 34057054 + 0 NA intron (NM_007186, intron 9 of 34) AluSz|SINE|Alu 12729 NM_007186 11190 Hs.443976 XM_005260262 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1 centrosomal protein 250kDa protein-coding 449 chr16 11438321 11440679 + 0 NA exon (NM_152308, exon 1 of 2) exon (NM_152308, exon 1 of 2) 189 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 1574 chr11 62238164 62241560 + 0 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 53355 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 1579 chr11 65414107 65415750 + 0 NA exon (NM_153253, exon 9 of 16) exon (NM_153253, exon 9 of 16) -1735 NR_039709 100616284 NR_039709 MIR4489 - microRNA 4489 ncRNA 659 chr19 48902364 48904423 + 0 NA intron (NM_000836, intron 2 of 12) intron (NM_000836, intron 2 of 12) 5261 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|GluN2D|NMDAR2D|NR2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D protein-coding 2774 chr11 122561334 122562863 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 35700 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 2763 chr11 72982081 72984638 + 0 NA exon (NM_001277208, exon 1 of 2) exon (NM_001277208, exon 1 of 2) 172 NM_001277208 5031 Hs.16362 XM_005274022 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y, G-protein coupled, 6 protein-coding 1141 chr8 8284664 8288036 + 0 NA Intergenic Intergenic -47093 NM_001080826 157285 Hs.657673 XM_005272369 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 682 chr2 11883229 11885453 + 0 NA intron (NM_001261427, intron 2 of 20) intron (NM_001261427, intron 2 of 20) -2381 NM_145693 23175 Hs.739141 NM_001261427 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 2971 chr22 36137683 36140122 + 0 NA 3' UTR (NM_001082576, exon 13 of 13) 3' UTR (NM_001082576, exon 13 of 13) 24983 NM_030642 80831 Hs.326561 NM_030642 ENSG00000128313 APOL5 APOL-V|APOLV apolipoprotein L, 5 protein-coding 353 chr14 56297886 56300215 + 0 NA Intergenic Intergenic -35658 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 375 chr15 68238249 68239605 + 0 NA Intergenic Intergenic -107645 NM_016166 8554 Hs.162458 XM_005254734 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT, 1 protein-coding 2989 chr3 58667999 58669541 + 0 NA Intergenic Intergenic -16209 NM_138805 131177 Hs.61265 XM_005264862 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3, member D protein-coding 984 chr5 100176813 100177880 + 0 NA intron (NM_005668, intron 4 of 4) MER51B|LTR|ERV1 61643 NM_005668 7903 Hs.308628 XM_005272078 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 2833 chr15 48751061 48753107 + 0 NA intron (NM_000138, intron 43 of 65) intron (NM_000138, intron 43 of 65) 127719 NM_001948 1854 Hs.527980 XM_005254211 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 2409 chr7 47796785 47800267 + 0 NA Intergenic Intergenic -2548 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 AC019066.3 long intergenic non-protein coding RNA 525 ncRNA 1155 chr8 17764249 17766923 + 0 NA Intergenic Intergenic -12539 NM_004467 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 1485 chr10 35007132 35011217 + 0 NA intron (NM_001184790, intron 1 of 22) AluSx1|SINE|Alu 95079 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 788 chr20 57925411 57926639 + 0 NA Intergenic Intergenic 50526 NM_207032 1908 Hs.1408 XM_005260312 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 128 chr10 60000134 60001732 + 0 NA intron (NM_152230, intron 1 of 5) L1MCc|LINE|L1 26761 NM_152230 253430 Hs.30280 XM_005269670 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 501 chr16 89778069 89779297 + 0 NA intron (NR_036480, intron 1 of 3) CpG 419 NR_036480 100128881 Hs.666282 XR_243501 ENSG00000261373 VPS9D1-AS1 RP11-368I7.2 VPS9D1 antisense RNA 1 ncRNA 2944 chr2 225542624 225544839 + 0 NA Intergenic Intergenic -93617 NM_001257197 8452 Hs.372286 XM_005246912 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 1313 chr9 112012987 112014393 + 0 NA intron (NM_019114, intron 13 of 25) intron (NM_019114, intron 13 of 25) 69554 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 278 chr12 63258842 63262169 + 0 NA intron (NM_020700, intron 1 of 9) MLT1F1|LTR|ERVL-MaLR 68160 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 1617 chr12 76344028 76349669 + 0 NA Intergenic Intergenic 78708 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 3144 chr8 8654154 8656596 + 0 NA intron (NM_004225, intron 1 of 2) intron (NM_004225, intron 1 of 2) 95709 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 490 chr16 69452729 69453378 + 0 NA Intergenic AluJb|SINE|Alu -5445 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5|RP11-140H17.1 cytochrome b5 type B (outer mitochondrial membrane) protein-coding 2650 chrX 46038925 46040740 + 0 NA Intergenic L1PB1|LINE|L1 -266792 NM_001129899 55634 Hs.632800 XM_005272625 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 1843 chr16 70733934 70744619 + 0 NA intron (NM_018052, intron 14 of 18) intron (NM_018052, intron 14 of 18) -19322 NM_138383 92154 Hs.432387 XM_005256236 ENSG00000132613 MTSS1L ABBA-1 metastasis suppressor 1-like protein-coding 155 chr11 46578329 46579869 + 0 NA intron (NM_001267782, intron 1 of 19) AluJr|SINE|Alu 33815 NM_017749 55626 Hs.654644 XM_005253009 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy/beclin-1 regulator 1 protein-coding 387 chr15 37189824 37191356 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -11856 NR_024264 145845 Hs.302693 NR_024264 LOC145845 - uncharacterized LOC145845 ncRNA 2626 chr9 93798957 93801016 + 0 NA Intergenic Intergenic 37428 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 1913 chr18 3793033 3795862 + 0 NA intron (NM_001003809, intron 2 of 9) intron (NM_001003809, intron 2 of 9) 50911 NM_001242766 9229 Hs.654793 XM_005258171 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|GKAP|SAPAP1|hGKAP discs, large (Drosophila) homolog-associated protein 1 protein-coding 1112 chr7 151145262 151146125 + 0 NA Intergenic CpG -8594 NM_144727 155051 Hs.647104 XM_005249952 ENSG00000127377 CRYGN - crystallin, gamma N protein-coding 626 chr19 5165747 5166490 + 0 NA Intergenic AluSq2|SINE|Alu 174696 NM_002850 5802 Hs.744928 XM_005259600 ENSG00000105426 PTPRS PTPSIGMA protein tyrosine phosphatase, receptor type, S protein-coding 1294 chr9 14220883 14222677 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) -40979 NM_001282787 4781 Hs.644095 XM_005251467 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 461 chr16 15611719 15613845 + 0 NA intron (NM_033201, intron 2 of 5) L2a|LINE|L2 16659 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 2712 chr1 232673212 232675720 + 0 NA Intergenic Intergenic -23223 NM_020808 57568 Hs.745009 XM_005273209 ENSG00000116991 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 1562 chr11 35103131 35106860 + 0 NA Intergenic MIRc|SINE|MIR -55422 NM_001202557 960 Hs.502328 XM_005253231 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 1426 chr1 114692961 114696844 + 0 NA 5' UTR (NM_205848, exon 1 of 8) 5' UTR (NM_205848, exon 1 of 8) 160 NM_205848 148281 Hs.736999 XM_005270496 ENSG00000134207 SYT6 sytVI synaptotagmin VI protein-coding 257 chr12 17456868 17458695 + 0 NA Intergenic LTR2|LTR|ERV1 316100 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase-associated protein 1 pseudogene 2 pseudo 1358 chrY 25355701 25357822 + 0 NA Intergenic Intergenic -8820 NM_020364 57054 Hs.592257 NM_020364 ENSG00000187191 DAZ3 pDP1679 deleted in azoospermia 3 protein-coding 951 chr5 17113024 17115585 + 0 NA Intergenic Intergenic -102628 NM_001271606 10409 Hs.646924 NM_001271606 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 782 chr20 52225599 52229219 + 0 NA Intergenic AluY|SINE|Alu -27773 NM_006526 7764 Hs.711564 XM_005260545 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 85 chr10 13740468 13751563 + 0 NA intron (NM_018027, intron 13 of 24) AluSc|SINE|Alu 117076 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 809 chr22 24551432 24553753 + 0 NA intron (NM_012295, intron 29 of 36) CpG -24852 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 2200 chr3 151693156 151695863 + 0 NA Intergenic Intergenic -48546 NR_110202 101928142 Hs.680207 XR_241600 ENSG00000242908 RP11-454C18.2 - uncharacterized LOC101928142 ncRNA 1156 chr8 17769558 17770453 + 0 NA Intergenic AluY|SINE|Alu -10361 NM_006197 5108 Hs.491148 XM_005273509 ENSG00000078674 PCM1 PTC4 pericentriolar material 1 protein-coding 2281 chr5 91894009 91899041 + 0 NA Intergenic Intergenic 1009974 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1557 chr11 34065915 34067370 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -6588 NM_005898 4076 Hs.471818 XM_005252931 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 1486 chr10 35019296 35027125 + 0 NA intron (NM_001184790, intron 1 of 22) intron (NM_001184790, intron 1 of 22) 81043 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 425 chr15 102070088 102071324 + 0 NA Intergenic Intergenic -40519 NM_138322 5046 Hs.665989 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 3057 chr5 9935 12004 + 0 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -129404 NM_052909 153478 Hs.535800 NM_052909 PLEKHG4B - pleckstrin homology domain containing, family G (with RhoGef domain) member 4B protein-coding 2056 chr2 231986971 231996266 + 0 NA intron (NR_034059, intron 15 of 23) AT_rich|Low_complexity|Low_complexity -1794 NM_000867 3357 Hs.421649 XM_005246520 ENSG00000135914 HTR2B 5-HT(2B)|5-HT2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled protein-coding 736 chr2 187407727 187409868 + 0 NA Intergenic Intergenic -45993 NM_002210 3685 Hs.436873 XM_005246536 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin, alpha V protein-coding 2876 chr17 67397044 67399133 + 0 NA Intergenic AluSx|SINE|Alu -12750 NM_002758 5608 Hs.463978 XM_005257515 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 539 chr17 39367829 39370025 + 0 NA Intergenic Intergenic -13973 NM_031961 83899 Hs.307013 NM_031961 ENSG00000239886 KRTAP9-2 KAP9.2|KRTAP9.2 keratin associated protein 9-2 protein-coding 781 chr20 50247316 50248774 + 0 NA intron (NM_006045, intron 15 of 27) intron (NM_006045, intron 15 of 27) -68675 NM_001258294 4773 Hs.744148 XM_005260413 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding 2847 chr16 58488474 58491616 + 0 NA Intergenic Charlie18a|DNA|hAT-Charlie -7504 NM_020465 65009 Hs.322430 NM_001130487 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 3233 chr9 31136350 31138443 + 0 NA Intergenic Intergenic -728944 NR_046204 401497 Hs.680131 NR_046204 LOC401497 - uncharacterized LOC401497 ncRNA 3015 chr4 5371238 5374437 + 0 NA intron (NM_018401, intron 4 of 11) MER31B|LTR|ERV1 -154046 NM_005750 10141 Hs.177972 NM_005750 ENSG00000082929 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 1950 chr19 2460665 2465103 + 0 NA Intergenic AluSq2|SINE|Alu -5918 NM_032737 84823 Hs.538286 NM_032737 ENSG00000176619 LMNB2 LAMB2|LMN2 lamin B2 protein-coding 2865 chr17 15844606 15846449 + 0 NA Intergenic MSTA|LTR|ERVL-MaLR -2704 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 1698 chr14 101154384 101156580 + 0 NA Intergenic Intergenic 31877 NR_024096 283601 Hs.379802 NR_024096 ENSG00000196273 LINC00523 C14orf70 long intergenic non-protein coding RNA 523 ncRNA 520 chr17 15861585 15863751 + 0 NA intron (NM_000676, intron 1 of 1) intron (NM_000676, intron 1 of 1) 14437 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 2782 chr12 31158014 31159887 + 0 NA Intergenic Intergenic -67829 NM_004399 1663 Hs.443960 XM_005253331 ENSG00000013573 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 protein-coding 2037 chr2 165550427 165554957 + 0 NA intron (NM_001278461, intron 10 of 12) intron (NM_001278461, intron 10 of 12) -8405 NR_033309 100337591 Hs.664357 NR_033309 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 532 chr17 37019192 37020424 + 0 NA Intergenic L2|LINE|L2 -6304 NR_073384 3927 Hs.741156 NM_001271608 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 1193 chr8 32093938 32096121 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -203233 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 2455 chr8 32120518 32130407 + 0 NA intron (NM_013962, intron 1 of 4) MLT1F2|LTR|ERVL-MaLR -172800 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 55 chr1 110334223 110335720 + 0 NA Intergenic Intergenic -28327 NM_024526 79574 Hs.485352 XM_005271193 ENSG00000198758 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 1890 chr17 46619600 46621785 + 0 NA exon (NM_002145, exon 2 of 2) exon (NM_002145, exon 2 of 2) -1021 NR_102279 100874362 Hs.171806 XR_243624 ENSG00000230148 HOXB-AS1 - HOXB cluster antisense RNA 1 ncRNA 1681 chr13 83674306 83677409 + 0 NA Intergenic L1PA3|LINE|L1 780671 NM_001281503 114798 Hs.694617 NM_001281503 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK-like family, member 1 protein-coding 57 chr1 110365830 110367518 + 0 NA Intergenic Intergenic -60030 NM_024526 79574 Hs.485352 XM_005271193 ENSG00000198758 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 2642 chr9 132499133 132501469 + 0 NA TTS (NM_004878) TTS (NM_004878) 15043 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 872 chr3 56725095 56726400 + 0 NA Intergenic LTR12C|LTR|ERV1 -8612 NM_001112736 23272 Hs.116877 XM_005264999 ENSG00000163946 FAM208A C3orf63|RAP140|se89-1 family with sequence similarity 208, member A protein-coding 2354 chr6 33805719 33811724 + 0 NA Intergenic LTR90B|LTR|LTR -36928 NM_002418 4295 Hs.2813 NM_001040109 ENSG00000096395 MLN - motilin protein-coding 1146 chr8 17471100 17473084 + 0 NA intron (NM_006207, intron 3 of 6) intron (NM_006207, intron 3 of 6) 38150 NM_006207 5157 Hs.458573 XM_005273528 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet-derived growth factor receptor-like protein-coding 395 chr15 53825043 53829765 + 0 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) 5645 NR_102336 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 89 chr10 33505226 33506461 + 0 NA intron (NM_001244972, intron 8 of 16) intron (NM_001244972, intron 8 of 16) 117990 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 175 chr11 27895339 27896090 + 0 NA Intergenic Intergenic -152109 NM_170731 627 Hs.502182 XM_005253060 ENSG00000176697 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 584 chr18 68023445 68026591 + 0 NA Intergenic Intergenic 68881 NM_004232 9306 Hs.44439 XM_005266783 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 988 chr5 137665351 137668361 + 0 NA exon (NM_001287583, exon 2 of 14) exon (NM_001287583, exon 2 of 14) 710 NM_001287582 995 Hs.656 XM_005272144 ENSG00000158402 CDC25C CDC25|PPP1R60 cell division cycle 25C protein-coding 35 chr1 29583815 29584550 + 0 NA intron (NM_001195001, intron 2 of 29) intron (NM_001195001, intron 2 of 29) 21154 NM_001195001 10076 Hs.19718 XM_005245710 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type, U protein-coding 2453 chr8 25114729 25123468 + 0 NA intron (NM_024940, intron 2 of 51) intron (NM_024940, intron 2 of 51) 76811 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2295 chr5 30099811 30101713 + 0 NA Intergenic Intergenic -704679 NR_104628 101929681 Hs.549659 XR_241753 LOC101929681 - uncharacterized LOC101929681 ncRNA 1882 chr17 39367535 39370655 + 0 NA Intergenic Intergenic -13805 NM_031961 83899 Hs.307013 NM_031961 ENSG00000239886 KRTAP9-2 KAP9.2|KRTAP9.2 keratin associated protein 9-2 protein-coding 1550 chr11 12195758 12198196 + 0 NA intron (NM_001282663, intron 3 of 27) AluSx1|SINE|Alu 11747 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA mir-6124 ncRNA 1454 chr10 34651414 34655381 + 0 NA intron (NM_001184790, intron 10 of 22) AluJo|SINE|Alu 450856 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1421 chr1 98508028 98512479 + 0 NA TTS (NR_039604) TTS (NR_039604) 654 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 2827 chr15 75396328 75399530 + 0 NA Intergenic Intergenic 82002 NM_021823 60490 Hs.458922 XM_005254579 ENSG00000138621 PPCDC - phosphopantothenoylcysteine decarboxylase protein-coding 665 chr19 54048584 54049300 + 0 NA intron (NM_001253800, intron 2 of 5) intron (NM_001253800, intron 2 of 5) 6900 NM_001253800 55422 Hs.185674 XM_005259040 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 3021 chr4 89111900 89113595 + 0 NA intron (NM_001257386, intron 1 of 15) L1MB7|LINE|L1 -32736 NM_004827 9429 Hs.480218 XM_005263354 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR1|UAQTL1 ATP-binding cassette, sub-family G (WHITE), member 2 protein-coding 2758 chr11 57219705 57222604 + 0 NA Intergenic Intergenic -6856 NM_178570 349667 Hs.603388 XM_005273973 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor-like 2 protein-coding 1476 chr10 33593976 33597135 + 0 NA intron (NM_001244972, intron 2 of 16) intron (NM_001244972, intron 2 of 16) 28278 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 2533 chr8 41627190 41629657 + 0 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 26717 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 1207 chr8 41624524 41625296 + 0 NA intron (NM_001142446, intron 1 of 42) CpG 30230 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 2641 chr9 132311340 132314604 + 0 NA Intergenic Intergenic -58191 NM_001286796 28989 Hs.744027 XM_005251936 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 2670 chr1 98795483 98798303 + 0 NA Intergenic Intergenic 120626 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 RP5-1070A16.1 - uncharacterized LOC729987 ncRNA 3007 chr3 135984573 135986419 + 0 NA intron (NM_000532, intron 5 of 14) L1MB7|LINE|L1 16329 NM_001178014 5096 Hs.63788 XM_005247507 ENSG00000114054 PCCB - propionyl CoA carboxylase, beta polypeptide protein-coding 1584 chr11 68313154 68315169 + 0 NA intron (NM_018312, intron 5 of 22) MLT1L|LTR|ERVL-MaLR 85975 NM_018312 55291 Hs.503022 XM_005274081 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6, regulatory subunit 3 protein-coding 904 chr4 175357757 175359493 + 0 NA Intergenic Intergenic 13679 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 930 chr4 124426176 124427369 + 0 NA Intergenic (A)n|Simple_repeat|Simple_repeat 106127 NM_005841 10252 Hs.744854 XM_005262686 ENSG00000164056 SPRY1 hSPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) protein-coding 1675 chr13 95779147 95784198 + 0 NA intron (NM_001105515, intron 19 of 20) intron (NM_001105515, intron 19 of 20) 172015 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 649 chr19 40440363 40442782 + 0 NA Intergenic Intergenic -1039 NM_003890 8857 Hs.111732 XM_005259365 ENSG00000090920 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 2972 chr22 44019596 44022138 + 0 NA intron (NM_022785, intron 20 of 31) intron (NM_022785, intron 20 of 31) 108733 NR_046563 100874197 Hs.627997 NR_046563 ENSG00000223843 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 2150 chr3 30618763 30621936 + 0 NA Intergenic MER72B|LTR|ERV1 -27645 NM_001024847 7048 Hs.604277 NM_001024847 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 1318 chr9 123294270 123295605 + 0 NA intron (NM_001272039, intron 7 of 34) intron (NM_001272039, intron 7 of 34) 47511 NR_073556 55755 Hs.269560 NM_001011649 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 648 chr19 39521167 39523212 + 0 NA intron (NM_178820, intron 2 of 5) intron (NM_178820, intron 2 of 5) 1009 NM_178820 126433 Hs.187461 NM_178820 ENSG00000161243 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 642 chr19 33559405 33562562 + 0 NA Intergenic Intergenic -5159 NM_033103 85415 Hs.466435 NM_033103 ENSG00000131941 RHPN2 P76RBE|RHOBP rhophilin, Rho GTPase binding protein 2 protein-coding 2006 chr2 28445292 28450719 + 0 NA intron (NM_001261840, intron 7 of 11) intron (NM_001261840, intron 7 of 11) 85321 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 AC093690.1 - uncharacterized LOC100505716 ncRNA 2245 chr4 86415716 86420453 + 0 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 21800 NM_001025616 83478 Hs.444229 XM_005263263 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 3178 chr8 62576828 62580471 + 0 NA intron (NM_032467, intron 4 of 4) AT_rich|Low_complexity|Low_complexity 23759 NM_001164752 444 Hs.332422 XM_005251235 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 1764 chr15 53599115 53601309 + 0 NA Intergenic Intergenic 232837 NR_102336 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 2130 chr22 39376712 39379329 + 0 NA promoter-TSS (NM_004900) promoter-TSS (NM_004900) -384 NM_001270411 9582 Hs.658626 XM_005261858 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B protein-coding 1908 chr18 68022912 68027500 + 0 NA Intergenic AluSz|SINE|Alu 69069 NM_004232 9306 Hs.44439 XM_005266783 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 1028 chr6 27832358 27833829 + 0 NA promoter-TSS (NM_003511) promoter-TSS (NM_003511) -14 NM_003511 8332 Hs.233568 NM_003511 ENSG00000198374 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1, H2al protein-coding 1589 chr11 69059760 69074709 + 0 NA Intergenic L2b|LINE|L2 5612 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 198 chr11 62193753 62195849 + 0 NA Intergenic AluSx|SINE|Alu 8294 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 2792 chr12 111135567 111137377 + 0 NA Intergenic Intergenic -8855 NM_001040107 84329 Hs.334637 XM_005253948 ENSG00000122986 HVCN1 HV1|VSOP hydrogen voltage-gated channel 1 protein-coding 2550 chr8 89338061 89341583 + 0 NA promoter-TSS (NM_005941) promoter-TSS (NM_005941) -105 NM_005941 4325 Hs.546267 XM_005250921 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 1718 chr14 56268665 56271561 + 0 NA Intergenic Intergenic -6721 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 1098 chr7 95099214 95101336 + 0 NA Intergenic Intergenic -14938 NM_016116 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 1059 chr7 81313765 81314936 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 85102 NM_001010933 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 2683 chr1 56656064 56657841 + 0 NA Intergenic Intergenic 388305 NM_003713 8613 Hs.619002 NM_003713 ENSG00000162407 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 3003 chr3 118910181 118911487 + 0 NA intron (NM_006952, intron 5 of 7) L2|LINE|L2 18409 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 913 chr4 74756957 74759003 + 0 NA Intergenic Intergenic 22871 NR_046035 2919 Hs.708652 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) protein-coding 2019 chr2 69900796 69905901 + 0 NA Intergenic Intergenic -32371 NM_014911 22848 Hs.468878 XM_005264206 AAK1 RP11-427H3.3 AP2 associated kinase 1 protein-coding 2665 chrX 123084548 123088069 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -8102 NM_001042749 10735 Hs.624663 XM_005262357 ENSG00000101972 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 202 chr11 63771302 63772247 + 0 NA intron (NM_014067, intron 4 of 10) intron (NM_014067, intron 4 of 10) 18449 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU domain, ubiquitin aldehyde binding 1 protein-coding 361 chr14 96561632 96563166 + 0 NA Intergenic Intergenic 56738 NM_001282464 56967 Hs.733033 XM_005267874 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 2468 chr8 90892975 90918897 + 0 NA Intergenic L1MA3|LINE|L1 -8160 NM_004337 734 Hs.436445 NM_001126111 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 184 chr11 46258328 46260332 + 0 NA Intergenic CpG -39859 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3-like 1 protein-coding 776 chr20 46145081 46146427 + 0 NA intron (NM_181659, intron 1 of 22) AluSz|SINE|Alu 15153 NM_001174088 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 2183 chr3 56724160 56726597 + 0 NA Intergenic Intergenic -8243 NM_001112736 23272 Hs.116877 XM_005264999 ENSG00000163946 FAM208A C3orf63|RAP140|se89-1 family with sequence similarity 208, member A protein-coding 1819 chr16 14637577 14645615 + 0 NA intron (NM_001134477, intron 21 of 23) intron (NM_001134477, intron 21 of 23) 82532 NM_002582 5073 Hs.253197 XM_005255341 ENSG00000140694 PARN DAN poly(A)-specific ribonuclease protein-coding 1459 chr10 62732392 62741993 + 0 NA intron (NR_024554, intron 2 of 11) intron (NR_024554, intron 2 of 11) 23544 NR_024554 9886 Hs.737374 NM_001242359 ENSG00000072422 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 1570 chr11 57404816 57409152 + 0 NA Intergenic Intergenic -1687 NR_029673 406919 NR_029673 ENSG00000208009 MIR130A MIRN130A|miRNA130A microRNA 130a ncRNA 2673 chr1 232799984 232802107 + 0 NA Intergenic L1MEg|LINE|L1 -139593 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule-associated protein 10 protein-coding 1984 chr2 20791073 20797352 + 0 NA Intergenic Intergenic -1904 NR_046836 100874343 Hs.591546 XR_244594 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 (non-protein coding) ncRNA 1269 chr8 129208227 129210825 + 0 NA Intergenic Intergenic 47164 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 181 chr11 34706427 34707108 + 0 NA Intergenic L1M5|LINE|L1 52756 NM_001206616 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 412 chr15 71731924 71734532 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -106313 NM_001286429 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 307 chr12 116863449 116865423 + 0 NA Intergenic Intergenic 1687 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 1671 chr12 123232532 123234841 + 0 NA Intergenic AluY|SINE|Alu -3685 NM_003677 8562 Hs.22393 XM_005253626 ENSG00000139726 DENR DRP|DRP1|SMAP-3 density-regulated protein protein-coding 2041 chr2 174022257 174027765 + 0 NA intron (NM_016653, intron 2 of 19) intron (NM_016653, intron 2 of 19) 84446 NM_016653 51776 Hs.444451 XM_005246639 ENSG00000091436 ZAK AZK|MLK7|MLT|MLTK|MRK|mlklak|pk sterile alpha motif and leucine zipper containing kinase AZK protein-coding 1467 chr10 22539256 22541975 + 0 NA promoter-TSS (NR_038921) promoter-TSS (NR_038921) -386 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 1463 chr10 7727035 7730765 + 0 NA Intergenic MIR|SINE|MIR -16336 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 830 chr22 43057987 43058942 + 0 NA Intergenic CpG -13059 NM_000398 1727 Hs.561064 NM_000398 ENSG00000100243 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 154 chr11 32455922 32457480 + 0 NA promoter-TSS (NR_023920) promoter-TSS (NR_023920) 380 NM_024424 7490 Hs.591980 XM_005253120 ENSG00000184937 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 2893 chr19 30177163 30182697 + 0 NA Intergenic L1MB7|LINE|L1 23603 NM_024310 79156 Hs.466383 XM_005259256 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology domain containing, family F (with FYVE domain) member 1 protein-coding 2062 chr2 238089917 238092173 + 0 NA Intergenic Intergenic 96961 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 1101 chr7 95119195 95120311 + 0 NA intron (NM_145872, intron 1 of 2) intron (NM_145872, intron 1 of 2) 4540 NM_145872 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 2801 chr13 95815565 95817494 + 0 NA intron (NM_001105515, intron 16 of 20) intron (NM_001105515, intron 16 of 20) 137158 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 704 chr2 62886508 62889088 + 0 NA Intergenic Intergenic -13188 NM_001142615 23301 Hs.271667 XM_005264225 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 326 chr13 95751285 95754206 + 0 NA intron (NM_001105515, intron 20 of 20) intron (NM_001105515, intron 20 of 20) 200942 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 1462 chr10 5630471 5633962 + 0 NA Intergenic Intergenic 65292 NM_005185 810 Hs.239600 XM_005252613 ENSG00000178363 CALML3 CLP calmodulin-like 3 protein-coding 1165 chr8 23032327 23033170 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -11205 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding 2886 chr18 20963995 20967706 + 0 NA intron (NM_032933, intron 4 of 14) AluY|SINE|Alu 52075 NM_032933 85019 Hs.137562 XM_005258373 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 2543 chr8 65710426 65711833 + 0 NA exon (NM_004820, exon 1 of 6) exon (NM_004820, exon 1 of 6) 219 NM_004820 9420 Hs.667720 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450, family 7, subfamily B, polypeptide 1 protein-coding 681 chr2 10259364 10267286 + 0 NA intron (NM_001165931, intron 2 of 9) CpG-14708 462 NM_001034 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase M2 protein-coding 335 chr14 29045610 29049337 + 0 NA Intergenic Intergenic -188805 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 3062 chr5 30083814 30085633 + 0 NA Intergenic Intergenic -688640 NR_104628 101929681 Hs.549659 XR_241753 LOC101929681 - uncharacterized LOC101929681 ncRNA 1029 chr6 27838841 27842285 + 0 NA promoter-TSS (NM_003533) promoter-TSS (NM_003533) -464 NM_003533 8354 Hs.586261 NM_003533 ENSG00000182572 HIST1H3I H3.f|H3/f|H3FF histone cluster 1, H3i protein-coding 2715 chr10 30899724 30903569 + 0 NA intron (NM_183058, intron 4 of 4) intron (NM_183058, intron 4 of 4) 17001 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 - lysozyme-like 2 protein-coding 5 chr1 90307999 90310235 + 0 NA intron (NM_018103, intron 1 of 2) CpG 21637 NM_018103 55144 Hs.482087 XM_005270991 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 2694 chr1 110464442 110468619 + 0 NA exon (NM_000757, exon 6 of 9) exon (NM_000757, exon 6 of 9) 13297 NM_172211 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 (macrophage) protein-coding 2105 chr21 45197800 45199943 + 0 NA Intergenic LTR26B|LTR|ERV1 -2615 NM_000100 1476 Hs.695 NM_000100 CSTB CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B (stefin B) protein-coding 2791 chr12 104879614 104882126 + 0 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) 30178 NM_018413 50515 Hs.17569 NM_001173982 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537 carbohydrate (chondroitin 4) sulfotransferase 11 protein-coding 1957 chr19 6674333 6675895 + 0 NA Intergenic Intergenic -4515 NM_172014 8740 Hs.129708 XM_005259670 ENSG00000125735 TNFSF14 CD258|HVEML|LIGHT|LTg|TR2 tumor necrosis factor (ligand) superfamily, member 14 protein-coding 554 chr17 53531981 53533481 + 0 NA Intergenic Intergenic -33390 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 2657 chrX 41275543 41276907 + 0 NA Intergenic AluY|SINE|Alu -30488 NM_022567 60506 Hs.302019 XM_005272632 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 552 chr17 53497476 53500176 + 0 NA intron (NM_012329, intron 1 of 6) CpG 515 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 1867 chr17 74478807 74482175 + 0 NA intron (NM_001005498, intron 1 of 17) intron (NM_001005498, intron 1 of 17) 3500 NM_001005498 79651 Hs.464157 XM_005257669 ENSG00000129667 RHBDF2 RHBDL5|RHBDL6|TOC rhomboid 5 homolog 2 (Drosophila) protein-coding 1623 chr12 117026594 117031288 + 0 NA Intergenic AluY|SINE|Alu 31755 NM_001085481 643246 Hs.506947 NM_001085481 ENSG00000171471 MAP1LC3B2 ATG8G microtubule-associated protein 1 light chain 3 beta 2 protein-coding 2505 chr8 19471595 19473549 + 0 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) -12516 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 74 chr1 202591765 202593123 + 0 NA intron (NM_177402, intron 1 of 8) intron (NM_177402, intron 1 of 8) 20137 NM_001136504 127833 Hs.25422 NM_001136504 ENSG00000143858 SYT2 SytII synaptotagmin II protein-coding 2936 chr2 165555026 165558562 + 0 NA intron (NM_001278461, intron 9 of 12) intron (NM_001278461, intron 9 of 12) -12507 NR_033309 100337591 Hs.664357 NR_033309 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 890 chr3 149823846 149825835 + 0 NA Intergenic Intergenic -131466 NR_110168 101927992 Hs.534682 XR_241591 ENSG00000244541 RP11-167H9.6 - uncharacterized LOC101927992 ncRNA 440 chr16 445967 449349 + 0 NA promoter-TSS (NM_001286440) promoter-TSS (NM_001286440) -84 NM_001286440 4833 Hs.9235 XM_005255333 ENSG00000103202 NME4 NDPK-D|NM23H4|nm23-H4 NME/NM23 nucleoside diphosphate kinase 4 protein-coding 1926 chr18 54481731 54484787 + 0 NA intron (NM_052834, intron 18 of 26) intron (NM_052834, intron 18 of 26) 164643 NM_052834 23335 Hs.465213 XM_005266673 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 1289 chr8 144536226 144537542 + 0 NA intron (NM_015117, intron 9 of 11) Tigger7|DNA|TcMar-Tigger -24282 NM_201589 389692 Hs.521914 NM_201589 ENSG00000182759 MAFA RIPE3b1|hMafA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A protein-coding 299 chr12 109629224 109631498 + 0 NA intron (NM_001093, intron 14 of 51) MER20|DNA|hAT-Charlie 53159 NM_001093 32 Hs.234898 XM_005253876 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 2024 chr2 121100562 121106943 + 0 NA promoter-TSS (NM_002193) promoter-TSS (NM_002193) 33 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin, beta B protein-coding 2525 chr8 32174591 32177318 + 0 NA intron (NM_013962, intron 1 of 4) MIR3|SINE|MIR -122308 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 1282 chr8 142045050 142046126 + 0 NA Intergenic Intergenic -34176 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 1694 chr14 35043910 35053858 + 0 NA intron (NM_152233, intron 10 of 13) L1ME3A|LINE|L1 -39941 NM_018453 55837 Hs.433269 XM_005267858 ENSG00000129518 EAPP BM036|C14orf11 E2F-associated phosphoprotein protein-coding 841 chr3 45677254 45679071 + 0 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 41839 NM_014240 8994 Hs.621057 XM_005265529 LIMD1 - LIM domains containing 1 protein-coding 1898 chr17 64559978 64564939 + 0 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -220732 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 1044 chr6 94494372 94495847 + 0 NA Intergenic Intergenic 78308 NR_015362 643432 Hs.509936 XR_241850 TSG1 - tumor suppressor TSG1 ncRNA 1350 chrX 140499281 140501280 + 0 NA Intergenic Intergenic -90563 NR_037183 619455 Hs.590784 NR_037183 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 (non-protein coding) ncRNA 1751 chr15 71725493 71734952 + 0 NA intron (NM_024817, intron 6 of 16) L1MC4a|LINE|L1 -109319 NM_001286429 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 91 chr10 34782274 34784119 + 0 NA intron (NM_001184790, intron 3 of 22) intron (NM_001184790, intron 3 of 22) 321057 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2137 chr22 45897487 45903015 + 0 NA intron (NM_006485, intron 1 of 14) intron (NM_006485, intron 1 of 14) 1532 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 3183 chr8 66909967 66912056 + 0 NA Intergenic L1PA5|LINE|L1 -22780 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 1240 chr8 101157341 101158905 + 0 NA promoter-TSS (NR_036491) promoter-TSS (NR_036491) -24 NR_036491 286151 Hs.339577 XM_005250897 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 2815 chr14 84022214 84024240 + 0 NA Intergenic LTR12_|LTR|ERV1 -1836996 NR_102737 100996280 Hs.742397 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 3079 chr6 28687609 28689172 + 0 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat -133278 NM_052923 114821 Hs.176980 NM_052923 ENSG00000232040 SCAND3 Buster4|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3 SCAN domain containing 3 protein-coding 467 chr16 19141847 19142666 + 0 NA Intergenic Intergenic 17002 NR_028028 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 2121 chr22 24584161 24589046 + 0 NA Intergenic L2c|LINE|L2 9159 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 474 chr16 30216973 30221800 + 0 NA Intergenic Intergenic -1138 NR_002557 613038 Hs.569585 NR_002557 ENSG00000258130 LOC613038 - coiled-coil domain containing 101 pseudogene pseudo 481 chr16 58485519 58487037 + 0 NA Intergenic MER34A1|LTR|ERV1 -11271 NM_020465 65009 Hs.322430 NM_001130487 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 867 chr3 45680145 45682996 + 0 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 45247 NM_014240 8994 Hs.621057 XM_005265529 LIMD1 - LIM domains containing 1 protein-coding 1976 chr19 48898695 48904392 + 0 NA intron (NM_000836, intron 1 of 12) intron (NM_000836, intron 1 of 12) 3411 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|GluN2D|NMDAR2D|NR2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D protein-coding 817 chr22 29899671 29900549 + 0 NA Intergenic Intergenic 23929 NM_021076 4744 Hs.198760 XM_005261619 ENSG00000100285 NEFH NFH neurofilament, heavy polypeptide protein-coding 563 chr17 70698234 70699257 + 0 NA intron (NM_139177, intron 7 of 9) intron (NM_139177, intron 7 of 9) -62134 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 - long intergenic non-protein coding RNA 511 ncRNA 2751 chr11 36166763 36169597 + 0 NA intron (NM_174902, intron 4 of 5) MLT1C|LTR|ERVL-MaLR 136532 NR_039769 100616311 NR_039769 MIR3973 - microRNA 3973 ncRNA 3248 chrX 13445455 13447515 + 0 NA Intergenic Intergenic 93125 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 RP11-142G7.2 - uncharacterized LOC100133123 ncRNA 2919 chr2 238106997 238109381 + 0 NA Intergenic Intergenic 114105 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 2953 chr20 13722415 13723791 + 0 NA intron (NM_001276380, intron 9 of 13) AluSz6|SINE|Alu 42429 NM_016649 51575 Hs.369284 NM_001276380 ENSG00000089048 ESF1 ABTAP|C20orf6|bA526K24.1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) protein-coding 229 chr11 73095655 73098438 + 0 NA intron (NM_032871, intron 1 of 10) AluJo|SINE|Alu 9333 NM_032871 84957 Hs.533720 XM_005274356 ENSG00000054967 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding 673 chr2 24231170 24232381 + 0 NA Intergenic MER50|LTR|ERV1 -1178 NM_001080473 388931 Hs.407482 XM_005264301 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 68 chr1 183133024 183133983 + 0 NA Intergenic Intergenic -21671 NM_005562 3918 Hs.591484 XM_005245150 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 2059 chr2 235408482 235412087 + 0 NA Intergenic Intergenic -4587 NM_001282431 10123 Hs.730678 XM_005246055 ENSG00000188042 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 315 chr12 122067089 122068276 + 0 NA intron (NM_032790, intron 1 of 1) intron (NM_032790, intron 1 of 1) 3227 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 2514 chr8 27692566 27696268 + 0 NA intron (NM_001278945, intron 1 of 7) intron (NM_001278945, intron 1 of 7) 1195 NM_018492 55872 Hs.104741 XM_005273570 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 1827 chr16 21829958 21832797 + 0 NA promoter-TSS (NR_003370) promoter-TSS (NR_003370) -882 NR_003370 730092 Hs.348979 NR_003370 RRN3P1 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 pseudo 2501 chr8 19245120 19249818 + 0 NA intron (NM_001174160, intron 7 of 8) intron (NM_001174160, intron 7 of 8) 75982 NM_001174159 63898 Hs.303208 NM_001174159 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 2366 chr6 74159364 74162822 + 0 NA intron (NM_138441, intron 1 of 4) CpG 950 NM_138441 115004 Hs.658405 NM_138441 MB21D1 C6orf150|cGAS|h-cGAS Mab-21 domain containing 1 protein-coding 1947 chr19 607905 612974 + 0 NA intron (NM_001194, intron 5 of 7) intron (NM_001194, intron 5 of 7) 20546 NM_001194 610 Hs.124161 NM_001194 ENSG00000099822 HCN2 BCNG-2|BCNG2|HAC-1 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 protein-coding 1347 chrX 122958395 122959603 + 0 NA Intergenic MER21B|LTR|ERVL -34663 NM_001204401 331 Hs.736565 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 222 chr11 69087632 69088793 + 0 NA Intergenic Intergenic 26590 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 2911 chr19 58739557 58740864 + 0 NA 5' UTR (NM_014480, exon 1 of 7) 5' UTR (NM_014480, exon 1 of 7) 140 NM_014480 27300 Hs.438994 XM_005258749 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 1504 chr10 128205860 128212096 + 0 NA intron (NM_001004298, intron 1 of 8) intron (NM_001004298, intron 1 of 8) 1032 NM_001004298 118611 Hs.587663 XM_005269491 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 25 chr1 9391204 9392270 + 0 NA intron (NM_025106, intron 1 of 2) intron (NM_025106, intron 1 of 2) 38796 NM_025106 80176 Hs.738680 XM_005263498 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 2270 chr4 189358563 189361829 + 0 NA Intergenic MIR3|SINE|MIR -16536 NR_033869 401164 Hs.435756 XR_244624 ENSG00000249378 LINC01060 RP11-219G10.3 long intergenic non-protein coding RNA 1060 ncRNA 2418 chr7 95097464 95104170 + 0 NA Intergenic MamRep4096|DNA|hAT? -14396 NM_016116 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 3132 chr7 157101290 157103872 + 0 NA Intergenic Intergenic -27129 NM_005494 10049 Hs.490745 XM_005249515 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 305 chr12 116809657 116812704 + 0 NA Intergenic Intergenic 54943 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 1253 chr8 125985329 125986163 + 0 NA intron (NM_152412, intron 1 of 2) intron (NM_152412, intron 1 of 2) 207 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 928 chr4 102131916 102133139 + 0 NA intron (NM_000944, intron 1 of 13) intron (NM_000944, intron 1 of 13) 29502 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA mir-8066 ncRNA 1644 chr12 53813194 53816093 + 0 NA Intergenic Intergenic -2996 NM_020547 269 Hs.659889 XM_005268786 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor, type II protein-coding 1526 chr11 57205664 57214547 + 0 NA Intergenic AluSx|SINE|Alu -15052 NM_017611 29015 Hs.99962 XM_005273942 ENSG00000134802 SLC43A3 EEG1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43, member 3 protein-coding 3245 chr9 140209786 140211479 + 0 NA intron (NM_017820, intron 19 of 21) CpG -13929 NM_001004354 441478 Hs.732282 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 217 chr11 68146618 68149742 + 0 NA intron (NM_002335, intron 5 of 22) intron (NM_002335, intron 5 of 22) 68072 NM_002335 4041 Hs.6347 XM_005273994 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2 low density lipoprotein receptor-related protein 5 protein-coding 2648 chrX 40859975 40863769 + 0 NA Intergenic Intergenic -83016 NM_001039590 8239 Hs.77578 XM_005272675 ENSG00000124486 USP9X DFFRX|FAF|FAM|RP5-1172N10.4 ubiquitin specific peptidase 9, X-linked protein-coding 1730 chr14 101928525 101932933 + 0 NA Intergenic Intergenic 91284 NR_002770 64150 Hs.745484 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 158 chr11 63683734 63685729 + 0 NA promoter-TSS (NM_173587) promoter-TSS (NM_173587) -415 NM_173587 283248 Hs.98788 XM_005273932 ENSG00000167771 RCOR2 - REST corepressor 2 protein-coding 281 chr12 76099608 76100630 + 0 NA Intergenic Intergenic -194701 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 46 chr1 90355684 90356698 + 0 NA intron (NM_018103, intron 2 of 2) L1MC4a|LINE|L1 68711 NM_018103 55144 Hs.482087 XM_005270991 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 1851 chr17 1898985 1903873 + 0 NA intron (NM_178568, intron 1 of 1) CpG 26749 NM_178568 146760 Hs.22917 NM_178568 ENSG00000185924 RTN4RL1 NGRH2|NgR3 reticulon 4 receptor-like 1 protein-coding 1316 chr9 114782481 114783921 + 0 NA intron (NR_036085, intron 3 of 3) intron (NR_036085, intron 3 of 3) 88821 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 2630 chr9 112012453 112015440 + 0 NA intron (NM_019114, intron 12 of 25) intron (NM_019114, intron 12 of 25) 69298 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 2373 chr7 68155424 68159246 + 0 NA Intergenic Intergenic 905146 NR_108105 100507468 Hs.362492 XR_108828 LOC100507468 - uncharacterized LOC100507468 ncRNA 1418 chr1 92315969 92318229 + 0 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 34737 NM_003243 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 36 chr1 30181633 30183191 + 0 NA Intergenic Intergenic 619384 NM_001195001 10076 Hs.19718 XM_005245710 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type, U protein-coding 2263 chr4 154265004 154267698 + 0 NA intron (NR_045605, intron 1 of 9) CpG 550 NM_001253861 84057 Hs.294088 XM_005263274 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 homolog (S. cerevisiae) protein-coding 1368 chr1 92073857 92081000 + 0 NA Intergenic Intergenic 110763 NM_001134420 8317 Hs.533573 XM_005271241 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 748 chr2 235902719 235906473 + 0 NA intron (NM_014521, intron 2 of 5) intron (NM_014521, intron 2 of 5) 43968 NM_014521 23677 Hs.516777 XM_005246069 ENSG00000130147 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 472 chr16 29467516 29473277 + 0 NA promoter-TSS (NM_001017390) promoter-TSS (NM_001017390) -811 NM_001017390 445329 Hs.744871 NM_001017390 ENSG00000213648 SULT1A4 HAST3|M-PST|ST1A3/ST1A4|TL-PST sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 protein-coding 1655 chr12 90149613 90152221 + 0 NA Intergenic Charlie4a|DNA|hAT-Charlie 48185 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 RP11-591N1.1 long intergenic non-protein coding RNA 936 ncRNA 1943 chr19 46906525 46908655 + 0 NA Intergenic L2b|LINE|L2 9329 NM_032040 83987 Hs.744359 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 317 chr12 123232639 123234505 + 0 NA Intergenic AluY|SINE|Alu -3799 NM_003677 8562 Hs.22393 XM_005253626 ENSG00000139726 DENR DRP|DRP1|SMAP-3 density-regulated protein protein-coding 711 chr2 86119347 86122365 + 0 NA Intergenic Intergenic -4699 NM_003896 8869 Hs.415117 XM_005264630 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 132 chr10 65274498 65275633 + 0 NA Intergenic L1MC1|LINE|L1 -6058 NM_001001330 221035 Hs.499833 XM_005269620 ENSG00000165476 REEP3 C10orf74 receptor accessory protein 3 protein-coding 1791 chr16 85720896 85723481 + 0 NA intron (NM_016095, intron 1 of 4) intron (NM_016095, intron 1 of 4) 400 NM_016095 51659 Hs.433180 NM_016095 GINS2 HSPC037|PSF2|Pfs2 GINS complex subunit 2 (Psf2 homolog) protein-coding 1254 chr8 126009745 126012236 + 0 NA 5' UTR (NM_003129, exon 1 of 11) 5' UTR (NM_003129, exon 1 of 11) 270 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 1642 chr12 53206110 53209503 + 0 NA promoter-TSS (NM_002272) promoter-TSS (NM_002272) 94 NM_002272 3851 Hs.731814 XM_005268860 ENSG00000170477 KRT4 CK-4|CK4|CYK4|K4 keratin 4 protein-coding 892 chr3 171619444 171620337 + 0 NA Intergenic Intergenic 58751 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 2180 chr3 47181497 47184985 + 0 NA intron (NM_014159, intron 1 of 20) intron (NM_014159, intron 1 of 20) 22226 NM_014159 29072 Hs.517941 XM_005265094 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HYPB|KMT3A|SET2|p231HBP SET domain containing 2 protein-coding 2769 chr11 103662558 103663893 + 0 NA Intergenic L1MD1|LINE|L1 -57409 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 2071 chr20 55602991 55609180 + 0 NA Intergenic MIRb|SINE|MIR 235622 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 1428 chr1 183131563 183134683 + 0 NA Intergenic Intergenic -22051 NM_005562 3918 Hs.591484 XM_005245150 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 546 chr17 44176727 44179639 + 0 NA intron (NM_015443, intron 2 of 14) intron (NM_015443, intron 2 of 14) 91983 NM_001193466 284058 Hs.648744 XM_005257232 ENSG00000120071 KANSL1 CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1 KAT8 regulatory NSL complex subunit 1 protein-coding 537 chr17 39112252 39115215 + 0 NA TTS (NM_213656) TTS (NM_213656) 9411 NM_213656 390792 Hs.28467 NM_213656 ENSG00000196859 KRT39 CK-39|K39|KA35 keratin 39 protein-coding 1018 chr6 26185085 26185836 + 0 NA Intergenic Intergenic 1436 NM_003523 8344 Hs.534369 NM_003523 ENSG00000197697 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1, H2be protein-coding 1125 chr8 62666621 62677454 + 0 NA Intergenic L1ME2z|LINE|L1 44690 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 2279 chr5 55735863 55738789 + 0 NA Intergenic Intergenic 40270 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 1007 chr6 2502128 2503480 + 0 NA Intergenic Intergenic 132494 NM_152554 154386 Hs.680574 NM_152554 C6orf195 RP11-145H9.2|bA145H9.2 chromosome 6 open reading frame 195 protein-coding 1443 chr1 242387569 242393775 + 0 NA intron (NM_152666, intron 5 of 10) AluSx|SINE|Alu 222112 NM_001195811 200150 Hs.672452 XM_005273084 ENSG00000180287 PLD5 PLDC phospholipase D family, member 5 protein-coding 741 chr2 208612106 208614160 + 0 NA intron (NM_152523, intron 9 of 10) intron (NM_152523, intron 9 of 10) -6398 NR_039934 100616361 NR_039934 ENSG00000264900 MIR4775 - microRNA 4775 ncRNA 1833 chr16 48156329 48158657 + 0 NA intron (NM_033226, intron 10 of 28) intron (NM_033226, intron 10 of 28) 23188 NM_033226 94160 Hs.410111 XR_243434 ENSG00000140798 ABCC12 MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 protein-coding 1186 chr8 29320819 29323117 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -113701 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 998 chr5 178212586 178214991 + 0 NA Intergenic Intergenic -10511 NR_024035 729522 Hs.382790 NR_024035 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 3119 chr7 74842478 74844985 + 0 NA intron (NM_001145064, intron 1 of 8) AluY|SINE|Alu 23610 NM_001145064 729438 Hs.647505 NM_001145064 GATSL2 - GATS protein-like 2 protein-coding 2806 chr14 31516539 31518629 + 0 NA intron (NM_001254728, intron 1 of 5) AluSq|SINE|Alu 21735 NM_001254728 11154 Hs.293411 XM_005267293 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor-related protein complex 4, sigma 1 subunit protein-coding 3032 chr4 74750754 74752878 + 0 NA Intergenic Intergenic 16707 NR_046035 2919 Hs.708652 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) protein-coding 1789 chr16 15580959 15606947 + 0 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) -2170 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 2240 chr4 75401782 75406642 + 0 NA Intergenic L2|LINE|L2 -76417 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 3192 chr8 89281651 89282890 + 0 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 57447 NM_005941 4325 Hs.546267 XM_005250921 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 2076 chr20 10307123 10310366 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 103829 NM_018848 8195 Hs.741430 XM_005260853 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 529 chr17 33583108 33585408 + 0 NA intron (NM_144975, intron 1 of 4) MamRep605|Unknown|Unknown 14172 NM_144975 162394 Hs.709347 XM_005257934 SLFN5 - schlafen family member 5 protein-coding 1545 chr11 6374621 6377071 + 0 NA Intergenic Intergenic -34106 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C, delta binding protein protein-coding 1838 chr16 63646147 63649264 + 0 NA Intergenic L1MB8|LINE|L1 1508214 NM_001797 1009 Hs.116471 XM_005255761 CDH11 CAD11|CDHOB|OB|OSF-4 cadherin 11, type 2, OB-cadherin (osteoblast) protein-coding 1773 chr15 65705294 65710292 + 0 NA intron (NM_020962, intron 1 of 19) intron (NM_020962, intron 1 of 19) 7617 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily, DCC subclass, member 4 protein-coding 1058 chr7 76084943 76089644 + 0 NA Intergenic AluJo|SINE|Alu -3679 NM_001102594 113878 Hs.187058 XM_005250131 ENSG00000091073 DTX2 RNF58 deltex homolog 2 (Drosophila) protein-coding 3166 chr8 41540735 41542244 + 0 NA intron (NM_001142446, intron 38 of 42) intron (NM_001142446, intron 38 of 42) -18685 NM_020480 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 2573 chr8 127590727 127594297 + 0 NA Intergenic Intergenic -21801 NM_174911 157638 Hs.741352 XM_005250798 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 987 chr5 106797287 106798289 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 208808 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 2984 chr3 27490923 27492344 + 0 NA intron (NM_001258379, intron 2 of 24) intron (NM_001258379, intron 2 of 24) 6612 NM_001258380 9497 Hs.250072 XM_005265592 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4, sodium bicarbonate cotransporter, member 7 protein-coding 1150 chr8 17640615 17641272 + 0 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 17483 NM_001001924 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2860 chr17 45334290 45336183 + 0 NA intron (NM_000212, intron 1 of 14) intron (NM_000212, intron 1 of 14) 4028 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding 3141 chr8 579011 581752 + 0 NA Intergenic Intergenic -84600 NM_175075 157695 Hs.289293 NM_001256113 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 1535 chr11 94468984 94471878 + 0 NA Intergenic Tigger16a|DNA|TcMar-Tigger -31077 NM_130847 154810 Hs.503594 XM_005273798 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 2390 chr7 2840245 2844426 + 0 NA intron (NM_007353, intron 1 of 3) intron (NM_007353, intron 1 of 3) 12558 NM_001282441 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 1335 chrX 46234166 46236345 + 0 NA Intergenic Intergenic -71369 NM_001129899 55634 Hs.632800 XM_005272625 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 908 chr4 8230188 8230731 + 0 NA intron (NM_018986, intron 12 of 17) intron (NM_018986, intron 12 of 17) 29399 NM_018986 54436 Hs.479116 XM_005247974 ENSG00000125089 SH3TC1 - SH3 domain and tetratricopeptide repeats 1 protein-coding 2580 chr8 130894166 130901553 + 0 NA intron (NR_046359, intron 4 of 14) MER20|DNA|hAT-Charlie 54259 NM_001256763 51571 Hs.126941 XM_005250963 ENSG00000153310 FAM49B L1 family with sequence similarity 49, member B protein-coding 3127 chr7 81338850 81340599 + 0 NA intron (NM_001010932, intron 12 of 17) intron (NM_001010932, intron 12 of 17) 59728 NM_001010933 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 284 chr12 76328252 76328919 + 0 NA Intergenic Intergenic 96971 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 1340 chrX 30319435 30321908 + 0 NA Intergenic MER68-int|LTR|ERVL 6824 NM_000475 190 Hs.268490 NM_000475 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0, group B, member 1 protein-coding 903 chr4 114899572 114901780 + 0 NA 5' UTR (NM_024590, exon 1 of 2) 5' UTR (NM_024590, exon 1 of 2) 202 NM_024590 79642 Hs.712042 XM_005263211 ENSG00000180801 ARSJ - arylsulfatase family, member J protein-coding 247 chr12 53263875 53271197 + 0 NA Intergenic Intergenic -24758 NM_173352 196374 Hs.665267 XM_005268695 ENSG00000170423 KRT78 K5B|Kb40 keratin 78 protein-coding 165 chr11 2960737 2963168 + 0 NA Intergenic Intergenic -11302 NM_003311 7262 Hs.154036 NM_003311 ENSG00000181649 PHLDA2 BRW1C|BWR1C|HLDA2|IPL|TSSC3 pleckstrin homology-like domain, family A, member 2 protein-coding 289 chr12 76378641 76380969 + 0 NA Intergenic Intergenic 45751 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 2351 chr6 27832091 27834212 + 0 NA promoter-TSS (NM_003511) promoter-TSS (NM_003511) 44 NM_003511 8332 Hs.233568 NM_003511 ENSG00000198374 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1, H2al protein-coding 729 chr2 165423254 165425153 + 0 NA intron (NM_004490, intron 2 of 13) AT_rich|Low_complexity|Low_complexity 54157 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 2119 chr22 21960741 21963148 + 0 NA intron (NM_001256355, intron 2 of 3) intron (NM_001256355, intron 2 of 3) 22396 NM_001017964 150223 Hs.355952 XM_005261347 ENSG00000161179 YDJC - YdjC homolog (bacterial) protein-coding 2 chr12 111871879 111873260 + 0 NA intron (NM_005475, intron 2 of 7) L1ME4a|LINE|L1 28817 NM_005475 10019 Hs.506784 XM_005253818 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 808 chr22 21909702 21911516 + 0 NA intron (NM_001256355, intron 1 of 3) FRAM|SINE|Alu -4859 NM_001128633 150221 Hs.447643 NM_001128633 ENSG00000183246 RIMBP3C RIM-BP3.3|RIMBP3.3 RIMS binding protein 3C protein-coding 845 chr3 171670585 171672231 + 0 NA Intergenic Intergenic -86010 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 2125 chr22 33775542 33780108 + 0 NA intron (NM_133642, intron 9 of 14) intron (NM_133642, intron 9 of 14) 54830 NR_039921 100616295 NR_039921 MIR4764 - microRNA 4764 ncRNA 2553 chr8 98445298 98447758 + 0 NA Intergenic Intergenic -156352 NM_033512 85453 Hs.173094 XR_242397 ENSG00000180543 TSPYL5 - TSPY-like 5 protein-coding 1847 chr16 88990855 88993389 + 0 NA intron (NM_005187, intron 1 of 11) intron (NM_005187, intron 1 of 11) 15486 NM_175931 863 Hs.513811 XM_005256323 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|ZMYND4 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 protein-coding 1231 chr8 83480523 83481811 + 0 NA Intergenic L1MEc|LINE|L1 -726646 NM_022133 64089 Hs.492121 XM_005251282 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 2979 chr3 177551976 177553467 + 0 NA Intergenic Intergenic 393012 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 RP11-335L9.1 long intergenic non-protein coding RNA 578 ncRNA 1249 chr8 122653663 122655159 + 0 NA promoter-TSS (NM_005328) promoter-TSS (NM_005328) -781 NM_005328 3037 Hs.159226 XM_005250900 HAS2 - hyaluronan synthase 2 protein-coding 147 chr10 135070422 135073803 + 0 NA Intergenic Intergenic -10723 NR_108078 101927671 Hs.741766 XR_242767 ENSG00000166917 MIR202HG - MIR202 host gene (non-protein coding) ncRNA 2446 chr8 17620033 17632477 + 0 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 32171 NM_001001924 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 973 chr5 77961377 77962691 + 0 NA Intergenic Intergenic -17386 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 2961 chr21 46387173 46389443 + 0 NA intron (NM_058190, intron 4 of 5) intron (NM_058190, intron 4 of 5) 25693 NR_033840 727699 Hs.397403 NR_033840 ENSG00000234880 LINC00163 C21orf134|NCRNA00163|NLC1-A|NLC1A long intergenic non-protein coding RNA 163 ncRNA 2569 chr8 125984892 125986315 + 0 NA promoter-TSS (NM_152412) promoter-TSS (NM_152412) 64 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 1046 chr6 105404766 105406785 + 0 NA intron (NM_001004317, intron 1 of 3) intron (NM_001004317, intron 1 of 3) 852 NM_001004317 389421 Hs.23616 XM_005266975 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B (C. elegans) protein-coding 1142 chr8 8520983 8522885 + 0 NA Intergenic Intergenic -37732 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 2095 chr21 32929867 32932773 + 0 NA promoter-TSS (NM_003253) promoter-TSS (NM_003253) -30 NM_003253 7074 Hs.517228 XM_005261037 ENSG00000156299 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 1291 chr8 145741442 145745458 + 0 NA promoter-TSS (NM_004260) promoter-TSS (NM_004260) 101 NM_014665 9684 Hs.459391 XM_005272358 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 3227 chr8 134739252 134741257 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -156071 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 2601 chr9 131463658 131466980 + 0 NA intron (NM_013355, intron 1 of 21) CpG 517 NM_013355 29941 Hs.300485 XM_005251946 ENSG00000160447 PKN3 RP11-545E17.1 protein kinase N3 protein-coding 2599 chr8 144533854 144538248 + 0 NA intron (NM_015117, intron 9 of 11) L1MDa|LINE|L1 -23449 NM_201589 389692 Hs.521914 NM_201589 ENSG00000182759 MAFA RIPE3b1|hMafA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A protein-coding 319 chr12 133093370 133094522 + 0 NA intron (NM_001142641, intron 2 of 16) intron (NM_001142641, intron 2 of 16) 26789 NM_001142641 57666 Hs.656668 XM_003403652 ENSG00000112787 FBRSL1 - fibrosin-like 1 protein-coding 2960 chr21 41879242 41880695 + 0 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 122725 NR_046774 100874326 Hs.679746 NR_046774 DSCAM-IT1 AF165176.2|zag4 DSCAM intronic transcript 1 (non-protein coding) ncRNA 2571 chr8 126282322 126284950 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -158927 NM_025195 10221 Hs.444947 XM_005250752 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 2857 chr16 89664795 89667949 + 0 NA Intergenic Intergenic -13344 NM_001128141 1800 Hs.109 XM_005256285 ENSG00000015413 DPEP1 MBD1|MDP|RDP dipeptidase 1 (renal) protein-coding 1179 chr8 25105418 25106930 + 0 NA intron (NM_024940, intron 2 of 51) intron (NM_024940, intron 2 of 51) 63887 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1052 chr6 151406462 151407284 + 0 NA intron (NM_001242768, intron 26 of 27) AluSx1|SINE|Alu -154261 NM_005100 9590 Hs.371240 XM_005267233 ENSG00000131016 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 1922 chr18 24159392 24161184 + 0 NA intron (NM_001258222, intron 1 of 4) intron (NM_001258222, intron 1 of 4) 11211 NR_107024 102466874 NR_107024 MIR8057 hsa-mir-8057 microRNA mir-8057 ncRNA 735 chr2 174218661 174221312 + 0 NA intron (NM_031942, intron 1 of 9) CpG 425 NM_145810 83879 Hs.470654 XM_005246883 ENSG00000144354 CDCA7 JPO1 cell division cycle associated 7 protein-coding 3048 chr4 175309920 175312583 + 0 NA Intergenic AluJb|SINE|Alu -33695 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 1493 chr10 95307361 95311303 + 0 NA Intergenic MADE1|DNA|TcMar-Mariner -17090 NM_181745 338557 Hs.661022 NM_001195755 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 2948 chr2 238129895 238133909 + 0 NA Intergenic (CATG)n|Simple_repeat|Simple_repeat 137818 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 2397 chr7 11797651 11800589 + 0 NA intron (NM_015204, intron 1 of 26) L1MEd|LINE|L1 72704 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 974 chr5 78013501 78014488 + 0 NA Intergenic Intergenic -69346 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 2629 chr9 97580717 97582764 + 0 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 9496 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 1271 chr8 131053546 131055460 + 0 NA Intergenic Intergenic -25606 NR_046361 51571 Hs.126941 XM_005250963 ENSG00000153310 FAM49B L1 family with sequence similarity 49, member B protein-coding 1668 chr12 119883669 119887760 + 0 NA intron (NM_178499, intron 2 of 13) AluSq2|SINE|Alu 113197 NM_178499 160777 Hs.98188 XM_005253854 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 1715 chr14 50504280 50508580 + 0 NA non-coding (NR_102736, exon 1 of 6) non-coding (NR_102736, exon 1 of 6) 172 NR_102736 100506499 Hs.732459 NR_102736 RP11-58E21.3 - uncharacterized LOC100506499 ncRNA 344 chr14 35045512 35046485 + 0 NA intron (NM_152233, intron 10 of 13) intron (NM_152233, intron 10 of 13) -37055 NM_018453 55837 Hs.433269 XM_005267858 ENSG00000129518 EAPP BM036|C14orf11 E2F-associated phosphoprotein protein-coding 1613 chr12 63091247 63101324 + 0 NA intron (NM_020700, intron 6 of 9) L3|LINE|CR1 98819 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 2103 chr21 43146180 43148331 + 0 NA Intergenic Intergenic 10659 NR_024028 54089 Hs.98186 NR_024028 ENSG00000232401 LINC00112 C21orf22|NCRNA00112 long intergenic non-protein coding RNA 112 ncRNA 2949 chr2 238134863 238137632 + 0 NA Intergenic Intergenic 142163 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 636 chr19 17468342 17469962 + 0 NA intron (NM_031310, intron 5 of 5) intron (NM_031310, intron 5 of 5) 18985 NM_031310 83483 Hs.107125 NM_031310 ENSG00000130300 PLVAP FELS|PV-1|PV1|gp68 plasmalemma vesicle associated protein protein-coding 1710 chr14 35161768 35163519 + 0 NA Intergenic LTR1|LTR|ERV1 20380 NM_021914 1073 Hs.180141 NM_001243645 ENSG00000165410 CFL2 NEM7 cofilin 2 (muscle) protein-coding 1406 chr1 36788364 36790296 + 0 NA intron (NM_018166, intron 1 of 2) CpG-886 425 NM_018166 55194 Hs.87016 XM_005270998 ENSG00000142694 EVA1B C1orf78|FAM176B|RP11-268J15.2 eva-1 homolog B (C. elegans) protein-coding 1104 chr7 102147706 102148750 + 0 NA intron (NM_001277335, intron 4 of 19).2 intron (NM_001277335, intron 4 of 19).2 9996 NM_001277335 100271927 Hs.530089 XM_005250084 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 2224 chr4 177698609 177704510 + 0 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 12340 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|VRP vascular endothelial growth factor C protein-coding 1133 chr8 145668162 145670924 + 0 NA intron (NM_013432, intron 2 of 25) CpG-26242 269 NM_013432 4796 Hs.675285 XM_005272320 ENSG00000160949 TONSL IKBR|NFKBIL2 tonsoku-like, DNA repair protein protein-coding 2421 chr7 102631091 102633683 + 0 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) 79043 NM_001031692 10234 Hs.567412 XM_005250108 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 209 chr11 65405422 65406291 + 0 NA TTS (NM_032223) TTS (NM_032223) 278 NM_006747 6494 Hs.530477 XM_005274189 ENSG00000213445 SIPA1 SPA1 signal-induced proliferation-associated 1 protein-coding 2837 chr15 71713631 71719114 + 0 NA intron (NM_024817, intron 6 of 16) L1MA2|LINE|L1 -123169 NM_001286429 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 1905 chr17 79013316 79015342 + 0 NA intron (NM_006340, intron 1 of 14) L2a|LINE|L2 5382 NM_006340 10458 Hs.128316 XM_005256942 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1-associated protein 2 protein-coding 3203 chr8 98435481 98437587 + 0 NA Intergenic Intergenic -146358 NM_033512 85453 Hs.173094 XR_242397 ENSG00000180543 TSPYL5 - TSPY-like 5 protein-coding 1118 chr8 17643087 17666696 + 0 NA intron (NM_001001924, intron 1 of 14) AluJb|SINE|Alu 3535 NM_001001924 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 1575 chr11 62245208 62249476 + 0 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 60835 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 117 chr10 34708711 34710210 + 0 NA intron (NM_001184790, intron 4 of 22) intron (NM_001184790, intron 4 of 22) 394793 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2428 chr7 139330059 139334992 + 0 NA intron (NM_001113239, intron 2 of 14) intron (NM_001113239, intron 2 of 14) 123851 NM_001080511 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2, member L protein-coding 2207 chr3 171711472 171713999 + 0 NA Intergenic Intergenic -44683 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 600 chr18 55679936 55681815 + 0 NA Intergenic MER134|DNA?|DNA? -30735 NM_015277 23327 Hs.185677 XM_005266657 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 80 chr1 236562273 236564563 + 0 NA intron (NM_080738, intron 1 of 5) intron (NM_080738, intron 1 of 5) 4702 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR-associated death domain protein-coding 336 chr14 56065474 56068848 + 0 NA intron (NM_001079521, intron 1 of 43) L3|LINE|CR1 20236 NR_073128 3895 Hs.509414 NM_001271014 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 (kinesin receptor) protein-coding 2472 chr8 122175235 122178188 + 0 NA Intergenic Intergenic -352402 NM_021021 6641 Hs.46701 XM_005251031 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding 457 chr16 15586002 15589841 + 0 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) -8202 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 1301 chr9 41002537 41003897 + 0 NA Intergenic L1P3|LINE|L1 -211105 NM_033160 26149 Hs.522147 XM_005272515 ENSG00000196409 ZNF658 - zinc finger protein 658 protein-coding 821 chr22 33776499 33780005 + 0 NA intron (NM_133642, intron 8 of 14) intron (NM_133642, intron 8 of 14) 54403 NR_039921 100616295 NR_039921 MIR4764 - microRNA 4764 ncRNA 696 chr2 42086477 42088347 + 0 NA Intergenic AluSz|SINE|Alu -17283 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 AC104654.1 - uncharacterized LOC388942 ncRNA 383 chr15 36719703 36721576 + 0 NA Intergenic Intergenic -151173 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 2532 chr8 41624159 41625586 + 0 NA intron (NM_001142446, intron 1 of 42) CpG 30268 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 1873 chr17 15883165 15888529 + 0 NA intron (NM_001042697, intron 3 of 4) intron (NM_001042697, intron 3 of 4) -16847 NM_017775 54902 Hs.462316 NM_001271420 ENSG00000011295 TTC19 2010204O13Rik|MC3DN2 tetratricopeptide repeat domain 19 protein-coding 1721 chr14 61643655 61648116 + 0 NA Intergenic Intergenic 102645 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 2497 chr8 17470566 17473679 + 0 NA intron (NM_006207, intron 3 of 6) AluJr|SINE|Alu 38180 NM_006207 5157 Hs.458573 XM_005273528 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet-derived growth factor receptor-like protein-coding 2179 chr3 46148983 46153164 + 0 NA Intergenic Intergenic -82094 NM_005283 2829 Hs.248116 NM_001024644 ENSG00000173578 XCR1 CCXCR1|GPR5 chemokine (C motif) receptor 1 protein-coding 2172 chr3 30393322 30400696 + 0 NA Intergenic MIR3|SINE|MIR -250985 NM_001024847 7048 Hs.604277 NM_001024847 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 1431 chr1 196526793 196528940 + 0 NA intron (NM_001287819, intron 1 of 26) intron (NM_001287819, intron 1 of 26) 23745 NR_039888 100616363 NR_039888 MIR4735 - microRNA 4735 ncRNA 92 chr10 34814949 34818314 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 287622 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1489 chr10 47370168 47375828 + 0 NA Intergenic Intergenic -6722 NR_027634 439965 Hs.283521 NR_027634 FAM35DP FAM35B2 family with sequence similarity 35, member A pseudogene pseudo 3050 chr5 1294183 1295957 + 0 NA promoter-TSS (NM_198253) promoter-TSS (NM_198253) 92 NM_001193376 7015 Hs.492203 XR_241712 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 1212 chr8 49332394 49333287 + 0 NA Intergenic Intergenic -131287 NR_105002 101929268 Hs.683934 XR_242464 ENSG00000253608 RP11-770E5.1 - uncharacterized LOC101929268 ncRNA 2253 chr4 102130870 102133832 + 0 NA intron (NM_000944, intron 1 of 13) MIR|SINE|MIR 29678 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA mir-8066 ncRNA 2787 chr12 76255658 76257912 + 0 NA Intergenic Intergenic 168771 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 2433 chr7 155600561 155602766 + 0 NA intron (NM_000193, intron 1 of 2) CpG 3304 NM_000193 6469 Hs.164537 NM_000193 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 1805 chr16 69138719 69143577 + 0 NA promoter-TSS (NM_005329) promoter-TSS (NM_005329) -295 NM_005329 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 3226 chr8 134699562 134703246 + 0 NA Intergenic Intergenic -117221 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1727 chr14 96560652 96563939 + 0 NA Intergenic Intergenic 56634 NM_001282464 56967 Hs.733033 XM_005267874 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 1477 chr10 34691699 34697156 + 0 NA intron (NM_001184790, intron 4 of 22) intron (NM_001184790, intron 4 of 22) 409826 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1164 chr8 22416854 22420455 + 0 NA intron (NM_005775, intron 5 of 20) intron (NM_005775, intron 5 of 20) -4525 NM_001018003 10174 Hs.528572 XM_005273370 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 2922 chr2 776089 777628 + 0 NA Intergenic L1M5|LINE|L1 87254 NR_033880 339822 Hs.651879 NR_033880 ENSG00000237667 LINC01115 AC113607.1 long intergenic non-protein coding RNA 1115 ncRNA 2824 chr15 81130773 81137545 + 0 NA TTS (NR_030393) TTS (NR_030393) 255 NR_030393 693132 NR_030393 ENSG00000208003 MIR549 MIRN549|hsa-mir-549|hsa-mir-549a microRNA 549 ncRNA 505 chr17 33699683 33701899 + 0 NA promoter-TSS (NM_152270) promoter-TSS (NM_152270) -71 NM_152270 91607 Hs.745059 XM_005258067 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 2739 chr11 9993750 9996518 + 0 NA intron (NM_030962, intron 13 of 39) intron (NM_030962, intron 13 of 39) -214054 NR_033972 440028 Hs.677541 XR_242804 ENSG00000245522 RP11-540A21.2 - uncharacterized LOC440028 ncRNA 670 chr19 56181572 56182864 + 0 NA intron (NM_001012478, intron 11 of 11) intron (NM_001012478, intron 11 of 11) -4343 NM_013333 29924 Hs.279953 XM_005258829 ENSG00000063245 EPN1 - epsin 1 protein-coding 1094 chr7 76586926 76587687 + 0 NA Intergenic Intergenic -22833 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 419 chr15 90363645 90365030 + 0 NA Intergenic L1M5|LINE|L1 -6265 NM_001150 290 Hs.1239 XM_005254892 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl (membrane) aminopeptidase protein-coding 2178 chr3 45679775 45682979 + 0 NA intron (NM_014240, intron 2 of 7) AluSp|SINE|Alu 45054 NM_014240 8994 Hs.621057 XM_005265529 LIMD1 - LIM domains containing 1 protein-coding 995 chr5 173930240 173932107 + 0 NA Intergenic Intergenic -220402 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 1225 chr8 67042212 67043309 + 0 NA intron (NM_033058, intron 2 of 10) intron (NM_033058, intron 2 of 10) 3482 NM_184086 84675 Hs.85524 XM_005251316 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 837 chr3 148896698 148898972 + 0 NA intron (NR_046371, intron 13 of 17) intron (NR_046371, intron 13 of 17) 41997 NM_000096 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 2909 chr19 36908888 36910072 + 0 NA promoter-TSS (NM_133466) promoter-TSS (NM_133466) 70 NM_133466 284406 Hs.558734 XM_005258810 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 2015 chr2 42353803 42357147 + 0 NA Intergenic Intergenic -41015 NM_001145076 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 290 chr12 81333073 81334135 + 0 NA Intergenic Intergenic -1910 NM_004664 8825 Hs.144333 XM_005269212 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|TIP-33|VELI1 lin-7 homolog A (C. elegans) protein-coding 625 chr19 4638734 4640657 + 0 NA promoter-TSS (NM_001167942) promoter-TSS (NM_001167942) 168 NM_152362 126282 Hs.465643 XM_005259487 ENSG00000185361 TNFAIP8L1 TIPE1 tumor necrosis factor, alpha-induced protein 8-like 1 protein-coding 149 chr11 65666070 65668132 + 0 NA intron (NM_005438, intron 1 of 3) CpG 896 NM_005438 8061 Hs.283565 XM_005274311 ENSG00000175592 FOSL1 FRA|FRA1|fra-1 FOS-like antigen 1 protein-coding 3208 chr8 110932360 110933806 + 0 NA Intergenic MER20|DNA|hAT-Charlie 53876 NM_014379 27012 Hs.13285 XM_005250866 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium channel, subfamily V, member 1 protein-coding 712 chr2 86150604 86152553 + 0 NA Intergenic MIRc|SINE|MIR -35421 NM_003896 8869 Hs.415117 XM_005264630 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 210 chr11 65414307 65415531 + 0 NA exon (NM_153253, exon 9 of 16) exon (NM_153253, exon 9 of 16) -1744 NR_039709 100616284 NR_039709 MIR4489 - microRNA 4489 ncRNA 406 chr15 71406176 71411108 + 0 NA promoter-TSS (NM_001102658) promoter-TSS (NM_001102658) -803 NM_001102658 196993 Hs.646533 XM_005254222 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 2560 chr8 103749667 103752174 + 0 NA Intergenic CpG -82790 NM_005655 7071 Hs.435001 NM_001032282 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 2289 chr5 16866172 16871980 + 0 NA intron (NM_012334, intron 2 of 40) intron (NM_012334, intron 2 of 40) 67309 NM_012334 4651 Hs.481720 XM_005248306 ENSG00000145555 MYO10 - myosin X protein-coding 2312 chr5 91887252 91889587 + 0 NA Intergenic Intergenic 1018080 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 19 chr1 3426203 3427004 + 0 NA intron (NM_001409, intron 10 of 36) intron (NM_001409, intron 10 of 36) 50751 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 3096 chr6 151408675 151410920 + 0 NA intron (NM_001242768, intron 26 of 27) AluSz|SINE|Alu -151337 NM_005100 9590 Hs.371240 XM_005267233 ENSG00000131016 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 2702 chr1 189575641 189577832 + 0 NA Intergenic MER63D|DNA|hAT-Blackjack 870023 NM_199051 339479 Hs.65765 XM_005245117 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C bone morphogenetic protein/retinoic acid inducible neural-specific 3 protein-coding 1030 chr6 30753344 30755368 + 0 NA Intergenic L1MB7|LINE|L1 -42029 NM_003897 8870 Hs.76095 NM_003897 ENSG00000137331 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 365 chr14 102030481 102031959 + 0 NA Intergenic CpG 3532 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 deiodinase, iodothyronine, type III protein-coding 2730 chr10 37398783 37403345 + 0 NA Intergenic Intergenic -13721 NM_052997 91074 Hs.373787 XM_005252639 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 763 chr20 22558574 22560217 + 0 NA promoter-TSS (NR_001558) promoter-TSS (NR_001558) -115 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 C20orf56|HCCDR1|NCRNA00261|bA216C10.1|dJ788L20.2 long intergenic non-protein coding RNA 261 ncRNA 3255 chrX 122946207 122949845 + 0 NA Intergenic AluY|SINE|Alu -45636 NM_001204401 331 Hs.736565 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 2593 chr8 142043955 142049271 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -35201 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 3196 chr8 90860007 90862017 + 0 NA Intergenic Intergenic -53084 NM_004337 734 Hs.436445 NM_001126111 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 2021 chr2 72009397 72013712 + 0 NA Intergenic AluJr|SINE|Alu 317722 NM_001130987 8291 Hs.252180 XM_005264584 ENSG00000135636 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 1895 chr17 62666099 62668663 + 0 NA Intergenic Intergenic -8995 NM_022739 64750 Hs.515011 XM_005257585 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 2920 chr2 238204839 238208867 + 0 NA Intergenic Intergenic 115997 NM_057167 1293 Hs.233240 XM_005246065 ENSG00000163359 COL6A3 - collagen, type VI, alpha 3 protein-coding 2038 chr2 165560516 165574490 + 0 NA intron (NM_001278461, intron 6 of 12) intron (NM_001278461, intron 6 of 12) -23216 NR_033309 100337591 Hs.664357 NR_033309 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 570 chr17 76324877 76327701 + 0 NA Intergenic AluY|SINE|Alu 29871 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 3123 chr7 80450349 80452749 + 0 NA intron (NM_006379, intron 4 of 17) L2c|LINE|L2 97118 NM_006379 10512 Hs.269109 XM_005250112 ENSG00000075223 SEMA3C SEMAE|SemE sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 1880 chr17 39050857 39053332 + 0 NA Intergenic Intergenic -10599 NM_019010 54474 Hs.84905 XM_005257464 ENSG00000171431 KRT20 CD20|CK-20|CK20|K20|KRT21 keratin 20 protein-coding 252 chr12 116932554 116934074 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -37913 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 1159 chr8 19443245 19445080 + 0 NA intron (NM_018371, intron 2 of 9) intron (NM_018371, intron 2 of 9) 15894 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 883 chr3 133171195 133172718 + 0 NA intron (NM_003571, intron 4 of 6) intron (NM_003571, intron 4 of 6) 53117 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2, phakinin protein-coding 2048 chr2 206612107 206614937 + 0 NA intron (NM_018534, intron 10 of 15) intron (NM_018534, intron 10 of 15) 66298 NM_201264 8828 Hs.471200 XM_005246933 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 655 chr19 45417478 45419143 + 0 NA intron (NM_001645, intron 2 of 3) intron (NM_001645, intron 2 of 3) 389 NM_001645 341 Hs.737668 XM_005258855 ENSG00000130208 APOC1 - apolipoprotein C-I protein-coding 3110 chr7 11740864 11743778 + 0 NA intron (NM_015204, intron 1 of 26) MLT1E3|LTR|ERVL-MaLR 129503 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 421 chr15 93276942 93278005 + 0 NA Intergenic C-rich|Low_complexity|Low_complexity -61241 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 1998 chr2 208545488 208553483 + 0 NA Intergenic AluSc8|SINE|Alu -26779 NM_001142300 151195 Hs.597952 XM_005246343 ENSG00000163249 CCNYL1 - cyclin Y-like 1 protein-coding 2930 chr2 129182628 129184459 + 0 NA Intergenic Intergenic -107372 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 2332 chr6 34202889 34217899 + 0 NA intron (NM_145899, intron 3 of 5) intron (NM_145899, intron 3 of 5) 1944 NR_106893 102465502 NR_106893 MIR6835 hsa-mir-6835 microRNA mir-6835 ncRNA 1367 chr1 90353999 90358345 + 0 NA intron (NM_018103, intron 2 of 2) L1MC4a|LINE|L1 68692 NM_018103 55144 Hs.482087 XM_005270991 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 271 chr12 63034412 63035418 + 0 NA Intergenic Intergenic 37449 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 1070 chr7 11839201 11840491 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 31978 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 1024 chr6 27519747 27521782 + 0 NA Intergenic L1MD2|LINE|L1 -79867 NM_007149 7738 Hs.158174 XM_005249379 ENSG00000096654 ZNF184 - zinc finger protein 184 protein-coding 3174 chr8 52299406 52300376 + 0 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 422114 NM_144651 137902 Hs.444882 XM_005251167 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 3117 chr7 67502752 67505436 + 0 NA Intergenic Intergenic 703131 NR_108104 101929736 Hs.634050 XR_242296 RP11-166O4.5 - uncharacterized LOC101929736 ncRNA 2867 chr17 20371928 20374046 + 0 NA Intergenic AluJb|SINE|Alu -2139 NM_001042685 284194 Hs.610820 XM_005256615 ENSG00000170298 LGALS9B - lectin, galactoside-binding, soluble, 9B protein-coding 2871 chr17 49706140 49707655 + 0 NA TTS (NM_020178) TTS (NM_020178) 369000 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit (SSU) processome component homolog (yeast) protein-coding 491 chr16 69453932 69455961 + 0 NA Intergenic L1MD3|LINE|L1 -3552 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5|RP11-140H17.1 cytochrome b5 type B (outer mitochondrial membrane) protein-coding 1863 chr17 53506971 53513631 + 0 NA Intergenic LTR54|LTR|ERV1 -10960 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 2463 chr8 48986608 48989710 + 0 NA Intergenic Intergenic 67164 NM_003350 7336 Hs.595400 XM_005251300 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin-conjugating enzyme E2 variant 2 protein-coding 13 chr1 153680280 153682492 + 0 NA Intergenic Arthur1|DNA|hAT-Tip100 -19117 NR_107050 102466879 NR_107050 MIR8083 hsa-mir-8083 microRNA mir-8083 ncRNA 2493 chr8 8520527 8528197 + 0 NA Intergenic AluSx|SINE|Alu -35304 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 105 chr10 33355038 33356647 + 0 NA Intergenic Intergenic -108549 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 1514 chr11 69452464 69473135 + 0 NA exon (NM_053056, exon 4 of 5) exon (NM_053056, exon 4 of 5) 6926 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 840 chr3 177074677 177078678 + 0 NA Intergenic Intergenic 64447 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 1647 chr12 66216147 66220880 + 0 NA 5' UTR (NM_003484, exon 1 of 4) 5' UTR (NM_003484, exon 1 of 4) 273 NM_003483 8091 Hs.505924 XM_005269164 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 597 chr18 24060093 24063083 + 0 NA intron (NM_001258221, intron 2 of 4) intron (NM_001258221, intron 2 of 4) 66912 NM_001142730 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 2380 chr7 47658411 47664611 + 0 NA promoter-TSS (NR_108090) promoter-TSS (NR_108090) -26 NR_108090 101929086 Hs.563487 XR_242177 ENSG00000236078 AC095067.1 - uncharacterized LOC101929086 ncRNA 111 chr10 33452489 33454089 + 0 NA Intergenic Intergenic 170544 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 1411 chr1 55938020 55941431 + 0 NA Intergenic Intergenic 248411 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 - microRNA 4422 ncRNA 408 chr15 71566734 71568997 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) 134077 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 1480 chr10 34792375 34796742 + 0 NA intron (NM_001184790, intron 3 of 22) intron (NM_001184790, intron 3 of 22) 309695 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2777 chr12 63240357 63244209 + 0 NA intron (NM_020700, intron 1 of 9) MER5A|DNA|hAT-Charlie 86382 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 242 chr11 122546772 122547971 + 0 NA intron (NM_032873, intron 1 of 13) AluJb|SINE|Alu 20973 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 559 chr17 64537560 64540520 + 0 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) 240114 NM_002737 5578 Hs.708867 XM_005257502 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PRKACA protein kinase C, alpha protein-coding 1588 chr11 68897841 68900090 + 0 NA Intergenic Intergenic 40065 NR_104161 338694 Hs.564235 XR_247248 ENSG00000261070 RP11-554A11.8 - uncharacterized LOC338694 ncRNA 32 chr1 16106145 16108263 + 0 NA intron (NM_001024216, intron 4 of 4) intron (NM_001024216, intron 4 of 4) 15745 NM_001024216 54751 Hs.530101 XM_005245900 ENSG00000162458 FBLIM1 CAL|FBLP-1|FBLP1 filamin binding LIM protein 1 protein-coding 443 chr16 1972908 1974366 + 0 NA Intergenic Intergenic -5406 NM_001009606 64711 Hs.670144 NM_001009606 ENSG00000162040 HS3ST6 HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 protein-coding 2234 chr4 38787494 38791502 + 0 NA Intergenic Intergenic -4887 NM_001195108 81793 Hs.730896 XM_005262671 ENSG00000174123 TLR10 CD290 toll-like receptor 10 protein-coding 1795 chr16 15634714 15647592 + 0 NA intron (NM_033201, intron 2 of 5) AluSx|SINE|Alu 45030 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 580 chr17 79370237 79371356 + 0 NA Intergenic CpG -2744 NM_001080519 57597 Hs.514580 NM_001080519 ENSG00000171282 BAHCC1 BAHD2 BAH domain and coiled-coil containing 1 protein-coding 2800 chr13 95805965 95810907 + 0 NA intron (NM_001105515, intron 19 of 20) intron (NM_001105515, intron 19 of 20) 145251 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 2523 chr8 32080932 32088969 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 201216 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 (non-protein coding) ncRNA 1257 chr8 126390781 126391994 + 0 NA Intergenic L1MEc|LINE|L1 -51176 NM_025195 10221 Hs.444947 XM_005250752 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 846 chr3 8670526 8672012 + 0 NA intron (NM_001256748, intron 7 of 11) MIR3|SINE|MIR 15215 NR_046358 51066 Hs.740735 XM_005265193 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 31 chr1 15910900 15911927 + 0 NA exon (NM_024758, exon 1 of 7) exon (NM_024758, exon 1 of 7) 192 NM_024758 79814 Hs.461532 NM_024758 AGMAT - agmatine ureohydrolase (agmatinase) protein-coding 1689 chr13 114807725 114813662 + 0 NA intron (NM_007368, intron 3 of 23) intron (NM_007368, intron 3 of 23) 87402 NM_007368 22821 Hs.593075 XM_005266195 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 2307 chr5 76106688 76111653 + 0 NA Intergenic SVA_D|Other|Other -5663 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 coagulation factor II (thrombin) receptor-like 1 protein-coding 1861 chr17 41794048 41803123 + 0 NA Intergenic AluSx3|SINE|Alu 37571 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|VBCH sclerostin protein-coding 2825 chr15 36660558 36668916 + 0 NA Intergenic Intergenic -207075 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 2706 chr1 199756447 199758260 + 0 NA Intergenic Intergenic -239377 NM_003822 2494 Hs.33446 XM_005245061 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 1296 chr9 75448026 75454498 + 0 NA TTS (NM_138691) TTS (NM_138691) 116971 NM_000689 216 Hs.76392 XM_005251800 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family, member A1 protein-coding 1553 chr11 19260930 19264085 + 0 NA promoter-TSS (NM_024680) promoter-TSS (NM_024680) 0 NM_024680 79733 Hs.523526 NM_001256371 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 2161 chr3 129203517 129207186 + 0 NA intron (NM_001280545, intron 16 of 30) intron (NM_001280545, intron 16 of 30) -42131 NM_000539 6010 Hs.247565 NM_000539 ENSG00000163914 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 2897 chr19 823336 824445 + 0 NA Intergenic Intergenic -1938 NM_001270366 79948 Hs.745399 NM_001270366 ENSG00000129951 LPPR3 LPR3|PRG-2|PRG2 lipid phosphate phosphatase-related protein type 3 protein-coding 1303 chr9 41823301 41827045 + 0 NA Intergenic L1P4b|LINE|L1 129903 NR_015363 389741 Hs.733665 XR_246681 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 2133 chr22 42708871 42711598 + 0 NA Intergenic Intergenic 44475 NR_036498 388906 Hs.730075 NR_036498 ENSG00000182057 LOC388906 - opioid growth factor receptor pseudogene pseudo 1654 chr12 87052141 87058326 + 0 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) -108504 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 968 chr5 66173759 66174763 + 0 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 49657 NM_015183 375449 Hs.595458 XM_005248498 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 675 chr2 145783957 145784942 + 0 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 358915 NR_033870 401014 Hs.742290 NR_033870 TEX41 AC074093.1|DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 15 chr1 196621738 196625058 + 0 NA intron (NM_001014975, intron 1 of 9) intron (NM_001014975, intron 1 of 9) 2390 NM_001014975 3075 Hs.363396 XM_005245111 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 431 chr16 24656950 24658648 + 0 NA Intergenic Charlie5|DNA|hAT-Charlie -83250 NM_014494 27327 Hs.655057 XM_005255253 ENSG00000090905 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 3016 chr4 95812471 95814378 + 0 NA intron (NM_001203, intron 2 of 12) MER5A1|DNA|hAT-Charlie -103959 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 382 chr15 36469287 36470149 + 0 NA Intergenic Intergenic 250661 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 - microRNA 4510 ncRNA 2236 chr4 54646858 54649272 + 0 NA Intergenic Intergenic 188942 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 2846 chr16 19102997 19107786 + 0 NA Intergenic Intergenic -19863 NM_001034841 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 1506 chr10 133453130 133455414 + 0 NA Intergenic Intergenic 168263 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 2855 chr16 69109972 69112874 + 0 NA intron (NM_024562, intron 17 of 17) L2a|LINE|L2 -28044 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 139 chr10 128074621 128077543 + 0 NA intron (NM_001288974, intron 1 of 18) intron (NM_001288974, intron 1 of 18) 1045 NM_001288974 8038 Hs.741333 XM_005270188 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 129 chr10 62714902 62716892 + 0 NA intron (NR_024554, intron 2 of 11) Tigger3b|DNA|TcMar-Tigger -11864 NM_014836 9886 Hs.737374 NM_001242359 ENSG00000072422 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 3008 chr3 158428912 158432336 + 0 NA intron (NM_206963, intron 2 of 5) intron (NM_206963, intron 2 of 5) 19651 NM_002888 5918 Hs.131269 XM_005247686 ENSG00000118849 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 926 chr4 95965351 95967605 + 0 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) -6352 NM_001256793 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2145 chr3 177074032 177078720 + 0 NA Intergenic Intergenic 64146 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 1246 chr8 108127587 108129407 + 0 NA Intergenic Intergenic -346025 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin-binding Rho activating protein protein-coding 859 chr3 30398204 30399810 + 0 NA Intergenic Intergenic -248987 NM_001024847 7048 Hs.604277 NM_001024847 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 1083 chr7 54881443 54882950 + 0 NA Intergenic Intergenic 55190 NR_110040 100996654 Hs.127991 XR_159054 RP11-745C15.2 - uncharacterized LOC100996654 ncRNA 739 chr2 204623768 204625136 + 0 NA Intergenic L1MA3|LINE|L1 53254 NM_001243077 940 Hs.443123 XM_005246969 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 1293 chr9 131464173 131466167 + 0 NA 5' UTR (NM_013355, exon 1 of 22) 5' UTR (NM_013355, exon 1 of 22) 368 NM_013355 29941 Hs.300485 XM_005251946 ENSG00000160447 PKN3 RP11-545E17.1 protein kinase N3 protein-coding 876 chr3 87254930 87256862 + 0 NA Intergenic Intergenic 19531 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 3024 chr4 155483717 155486549 + 0 NA intron (NM_001184741, intron 1 of 7) intron (NM_001184741, intron 1 of 7) 1001 NM_001184741 2244 Hs.300774 NM_001184741 FGB HEL-S-78p fibrinogen beta chain protein-coding 1792 chr16 161971 165366 + 0 NA intron (NM_001039476, intron 2 of 10) intron (NM_001039476, intron 2 of 10) 25029 NM_001243248 8131 Hs.19699 NM_001039476 ENSG00000103148 NPRL3 C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11 nitrogen permease regulator-like 3 (S. cerevisiae) protein-coding 2890 chr18 55675927 55678433 + 0 NA Intergenic AluJb|SINE|Alu -34430 NM_015277 23327 Hs.185677 XM_005266657 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 662 chr19 49091862 49093173 + 0 NA intron (NM_177973, intron 3 of 6) L2a|LINE|L2 13524 NM_004605 6820 Hs.369331 XM_005259182 ENSG00000088002 SULT2B1 HSST2 sulfotransferase family, cytosolic, 2B, member 1 protein-coding 168 chr11 10415322 10417683 + 0 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) -55366 NM_001172431 272 Hs.501890 XM_005252867 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 135 chr10 95308035 95309256 + 0 NA Intergenic Intergenic -17777 NM_181745 338557 Hs.661022 NM_001195755 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 1518 chr11 9877164 9885460 + 0 NA intron (NM_030962, intron 17 of 39) intron (NM_030962, intron 17 of 39) -100232 NR_033972 440028 Hs.677541 XR_242804 ENSG00000245522 RP11-540A21.2 - uncharacterized LOC440028 ncRNA 145 chr10 134257451 134262348 + 0 NA intron (NM_173541, intron 2 of 2) intron (NM_173541, intron 2 of 2) 1185 NM_173541 170393 Hs.375059 NM_173541 C10orf91 RP11-432J24.4|bA432J24.4 chromosome 10 open reading frame 91 protein-coding 178 chr11 34606722 34609522 + 0 NA Intergenic Intergenic -34466 NM_012153 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 2674 chr1 244086932 244088837 + 0 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 7180 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 RP11-278H7.1 - uncharacterized LOC339529 ncRNA 1131 chr8 129596466 129598485 + 0 NA Intergenic Intergenic 435113 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 3156 chr8 19487927 19491741 + 0 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) -29778 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 2728 chr10 34767986 34770629 + 0 NA intron (NM_001184790, intron 3 of 22) AluJr|SINE|Alu 334946 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1876 chr17 28776453 28779726 + 0 NA intron (NM_001199775, intron 13 of 20) MIRb|SINE|MIR -26337 NM_001007025 9527 Hs.462680 XM_005258070 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 124 chr10 34989461 34990694 + 0 NA intron (NM_001184790, intron 1 of 22) intron (NM_001184790, intron 1 of 22) 114176 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 772 chr20 46046472 46047584 + 0 NA Intergenic Intergenic -61395 NM_183048 23613 Hs.668465 XM_005260356 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 1759 chr15 36783527 36795602 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -82248 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 1429 chr1 191487598 191490760 + 0 NA Intergenic Intergenic -638413 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G-protein signaling 18 protein-coding 1974 chr19 48793087 48794946 + 0 NA Intergenic Intergenic 19362 NM_153608 163071 Hs.511883 XM_005258579 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 2032 chr2 159846193 159847712 + 0 NA intron (NM_001145909, intron 1 of 26) L2c|LINE|L2 21806 NM_033394 85461 Hs.61590 XM_005246918 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 2536 chr8 41685073 41686756 + 0 NA intron (NM_001142446, intron 1 of 42) CpG -30774 NM_020476 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 2483 chr8 141993052 142000874 + 0 NA intron (NM_005607, intron 1 of 31) L1MEd|LINE|L1 14449 NM_153831 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 3026 chr4 5382748 5385659 + 0 NA intron (NM_018401, intron 4 of 11) intron (NM_018401, intron 4 of 11) -142680 NM_005750 10141 Hs.177972 NM_005750 ENSG00000082929 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 1374 chr1 114651336 114662799 + 0 NA intron (NM_001270805, intron 3 of 7) intron (NM_001270805, intron 3 of 7) 37995 NM_205848 148281 Hs.736999 XM_005270496 ENSG00000134207 SYT6 sytVI synaptotagmin VI protein-coding 1528 chr11 59472483 59476403 + 0 NA Intergenic LTR3|LTR|ERVK 6875 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor, family 10, subfamily V, member 1 protein-coding 2807 chr14 52303374 52305345 + 0 NA Intergenic AluSx|SINE|Alu -22663 NM_053064 54331 Hs.741081 NM_001243773 ENSG00000186469 GNG2 - guanine nucleotide binding protein (G protein), gamma 2 protein-coding 2303 chr5 56988202 56990337 + 0 NA Intergenic Intergenic 42782 NR_104668 101928505 Hs.119998 XR_241796 LOC101928505 - uncharacterized LOC101928505 ncRNA 653 chr19 45413206 45415266 + 0 NA Intergenic AluSz|SINE|Alu -3685 NM_001645 341 Hs.737668 XM_005258855 ENSG00000130208 APOC1 - apolipoprotein C-I protein-coding 1692 chr14 28849781 28853555 + 0 NA Intergenic Intergenic -384610 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 2677 chr1 3503434 3504736 + 0 NA intron (NM_001409, intron 3 of 36) LTR62|LTR|ERVL 23974 NM_001409 1953 Hs.593645 XM_005244735 MEGF6 EGFL3 multiple EGF-like-domains 6 protein-coding 2259 chr4 126640676 126643412 + 0 NA Intergenic Intergenic 213630 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 3064 chr5 55412185 55414277 + 0 NA intron (NM_024669, intron 8 of 11) L1M5|LINE|L1 115955 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 509 chr17 76480092 76481525 + 0 NA promoter-TSS (NR_102401) promoter-TSS (NR_102401) -184 NR_102401 100996295 Hs.638630 NR_102401 DNAH17-AS1 RP11-559N14.5 DNAH17 antisense RNA 1 ncRNA 2212 chr4 1766714 1770662 + 0 NA Intergenic CpG -26351 NM_000142 2261 Hs.1420 NM_000142 ENSG00000068078 FGFR3 ACH|CD333|CEK2|HSFGFR3EX|JTK4 fibroblast growth factor receptor 3 protein-coding 1015 chr6 26043095 26046741 + 0 NA promoter-TSS (NM_003531) promoter-TSS (NM_003531) -721 NM_003531 8352 Hs.248176 NM_003531 ENSG00000196532 HIST1H3C H3.1|H3/c|H3FC histone cluster 1, H3c protein-coding 367 chr14 102748802 102749531 + 0 NA intron (NM_014226, intron 2 of 11) AluSz6|SINE|Alu 22371 NM_001272011 5891 Hs.104119 NM_001272011 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1 MOK protein kinase protein-coding 976 chr5 78071967 78073063 + 0 NA TTS (NM_000046) TTS (NM_000046) -127867 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 716 chr2 120188492 120189945 + 0 NA promoter-TSS (NM_183240) promoter-TSS (NM_183240) -228 NM_183240 140738 Hs.26216 XM_005263597 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 1886 chr17 42732905 42734596 + 0 NA promoter-TSS (NM_001145080) promoter-TSS (NM_001145080) -12 NM_001145080 284071 Hs.349758 XM_005257236 ENSG00000180336 C17orf104 - chromosome 17 open reading frame 104 protein-coding 1821 chr16 15574644 15580679 + 0 NA intron (NM_033201, intron 1 of 5) MIR|SINE|MIR -18462 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 1972 chr19 46312129 46314445 + 0 NA intron (NM_030785, intron 2 of 5) AluJr|SINE|Alu 5318 NM_030785 81492 Hs.146544 NM_030785 ENSG00000104941 RSPH6A RSHL1|RSP4|RSP6|RSPH4B radial spoke head 6 homolog A (Chlamydomonas) protein-coding 940 chr4 189028516 189032276 + 0 NA Intergenic Intergenic -3988 NM_173553 205860 Hs.276429 XM_005262819 ENSG00000179046 TRIML2 SPRYD6 tripartite motif family-like 2 protein-coding 685 chr2 27007913 27011591 + 0 NA intron (NM_001042426, intron 1 of 3) intron (NM_001042426, intron 1 of 3) 869 NM_001042426 1058 Hs.1594 XR_244922 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 743 chr2 228230503 228232891 + 0 NA intron (NM_024795, intron 2 of 3) intron (NM_024795, intron 2 of 3) 12325 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 2265 chr4 175342348 175346019 + 0 NA promoter-TSS (NR_036236) promoter-TSS (NR_036236) -763 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 21 chr1 3446222 3448728 + 0 NA intron (NM_001409, intron 4 of 36) CpG 29879 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 523 chr17 15884849 15885938 + 0 NA intron (NM_001042697, intron 3 of 4) intron (NM_001042697, intron 3 of 4) -17301 NM_017775 54902 Hs.462316 NM_001271420 ENSG00000011295 TTC19 2010204O13Rik|MC3DN2 tetratricopeptide repeat domain 19 protein-coding 2377 chr7 11696494 11700089 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 173533 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2129 chr22 37721404 37729907 + 0 NA Intergenic Intergenic 47160 NM_013385 27128 Hs.170944 XM_005261567 ENSG00000100055 CYTH4 CYT4|DJ63G5.1|PSCD4 cytohesin 4 protein-coding 1460 chr10 62746169 62762280 + 0 NA intron (NR_024555, intron 1 of 11) L2a|LINE|L2 6512 NR_024554 9886 Hs.737374 NM_001242359 ENSG00000072422 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 453 chr16 14639350 14640349 + 0 NA intron (NM_001134477, intron 21 of 23) L1MEf|LINE|L1 84279 NM_002582 5073 Hs.253197 XM_005255341 ENSG00000140694 PARN DAN poly(A)-specific ribonuclease protein-coding 723 chr2 153282235 153283909 + 0 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 91321 NM_052905 114793 Hs.654630 XM_005246263 ENSG00000157827 FMNL2 FHOD2 formin-like 2 protein-coding 2500 chr8 17718622 17723657 + 0 NA TTS (NM_147203) TTS (NM_147203) 31774 NM_147203 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 1202 chr8 37683811 37685013 + 0 NA intron (NM_032777, intron 2 of 18) intron (NM_032777, intron 2 of 18) 23019 NM_018310 55290 Hs.709301 NM_018310 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit protein-coding 3162 chr8 38310935 38314524 + 0 NA intron (NM_001174064, intron 2 of 18) AluJb|SINE|Alu 12634 NM_001174067 2260 Hs.264887 XM_005273449 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 351 chr14 55116717 55121477 + 0 NA intron (NM_001161576, intron 1 of 10) intron (NM_001161576, intron 1 of 10) 84767 NM_015589 23034 Hs.733324 XM_005267432 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 1040 chr6 73330998 73333287 + 0 NA exon (NM_019842, exon 1 of 14) exon (NM_019842, exon 1 of 14) 571 NM_001160134 56479 Hs.445324 XM_005248734 ENSG00000185760 KCNQ5 Kv7.5 potassium voltage-gated channel, KQT-like subfamily, member 5 protein-coding 2838 chr15 77558517 77560278 + 0 NA intron (NM_024776, intron 3 of 7) L1PA5|LINE|L1 -41651 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 595 chr18 21274611 21276243 + 0 NA intron (NM_198129, intron 1 of 74) intron (NM_198129, intron 1 of 74) 5865 NM_001127717 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 1755 chr15 101497703 101501252 + 0 NA intron (NM_024652, intron 2 of 33) intron (NM_024652, intron 2 of 33) 40017 NM_024652 79705 Hs.407918 XM_005254979 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine-rich repeat kinase 1 protein-coding 1138 chr8 8145372 8147664 + 0 NA Intergenic Intergenic 60426 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 488 chr16 69123355 69124041 + 0 NA Intergenic Intergenic -15769 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 2926 chr2 45404519 45406229 + 0 NA intron (NR_033831, intron 4 of 5) intron (NR_033831, intron 4 of 5) 76706 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 1854 chr17 15793789 15807237 + 0 NA Intergenic L1MEd|LINE|L1 -47718 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 1012 chr6 17881533 17882471 + 0 NA intron (NM_001105568, intron 3 of 37) AluSz|SINE|Alu 105852 NM_001105568 63971 Hs.94499 XM_005249289 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 1498 chr10 114500694 114504881 + 0 NA intron (NM_145206, intron 7 of 7) (TG)n|Simple_repeat|Simple_repeat 108858 NR_036177 100422909 NR_036177 MIR4295 - microRNA 4295 ncRNA 835 chr22 46041047 46042553 + 0 NA Intergenic CpG -25878 NM_001167621 25814 Hs.475125 XM_005261507 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 2182 chr3 49501445 49503975 + 0 NA Intergenic AluSq10|SINE|Alu -3426 NM_001177643 1605 Hs.76111 NM_001165928 ENSG00000173402 DAG1 156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9 dystroglycan 1 (dystrophin-associated glycoprotein 1) protein-coding 1267 chr8 129169596 129170272 + 0 NA Intergenic Intergenic 7572 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 1032 chr6 34203285 34203859 + 0 NA Intergenic CpG -1005 NM_145903 3159 Hs.703764 XM_005249059 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 113 chr10 33594881 33596613 + 0 NA intron (NM_001244972, intron 2 of 16) intron (NM_001244972, intron 2 of 16) 28086 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 901 chr4 40992137 40994309 + 0 NA intron (NM_004307, intron 6 of 17) AluJb|SINE|Alu -134014 NM_001166053 323 Hs.479602 XM_005248094 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding 2191 chr3 119021514 119024746 + 0 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) 9910 NM_020754 57514 Hs.668218 XM_005247671 ENSG00000031081 ARHGAP31 AOS1|CDGAP Rho GTPase activating protein 31 protein-coding 152 chr11 9879352 9881150 + 0 NA intron (NM_030962, intron 17 of 39) intron (NM_030962, intron 17 of 39) -99171 NR_033972 440028 Hs.677541 XR_242804 ENSG00000245522 RP11-540A21.2 - uncharacterized LOC440028 ncRNA 2931 chr2 129215113 129218049 + 0 NA Intergenic L1M5|LINE|L1 -140410 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 342 chr14 34546857 34548118 + 0 NA Intergenic LTR16D1|LTR|ERVL -127203 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 1419 chr1 92336445 92339684 + 0 NA intron (NM_001195684, intron 2 of 17) intron (NM_001195684, intron 2 of 17) 13772 NM_003243 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 862 chr3 32442649 32443798 + 0 NA intron (NM_181472, intron 1 of 3) CpG 10060 NM_181472 112616 Hs.440494 XM_005264841 ENSG00000153551 CMTM7 CKLFSF7 CKLF-like MARVEL transmembrane domain containing 7 protein-coding 341 chr14 31343099 31344309 + 0 NA promoter-TSS (NM_004086) promoter-TSS (NM_004086) -37 NM_001135058 1690 Hs.21016 XM_005267388 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9 cochlin protein-coding 1056 chr7 11698107 11699112 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 173215 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2883 chr18 8673222 8674419 + 0 NA Intergenic MER65-int|LTR|ERV1 -43549 NM_015210 23255 Hs.707920 XM_005258098 ENSG00000168502 SOGA2 CCDC165|KIAA0802|MTCL1 SOGA family member 2 protein-coding 2189 chr3 112804759 112807762 + 0 NA Intergenic Intergenic -67705 NR_027796 25871 Hs.591288 XM_005247273 ENSG00000163608 C3orf17 NET17 chromosome 3 open reading frame 17 protein-coding 2287 chr5 10511180 10515629 + 0 NA Intergenic AluSq|SINE|Alu -10564 NR_104606 101929412 Hs.508287 XR_241739 ENSG00000249396 RP11-1C1.4 - uncharacterized LOC101929412 ncRNA 2540 chr8 54791738 54800236 + 0 NA intron (NR_104579, intron 1 of 3) AluSp|SINE|Alu 2555 NR_104579 8601 Hs.368733 XM_005251323 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 3108 chr7 11703638 11706234 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 166888 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2284 chr5 141702050 141708037 + 0 NA promoter-TSS (NM_001127496) promoter-TSS (NM_001127496) -423 NM_030964 81848 Hs.323308 XM_005268517 ENSG00000187678 SPRY4 HH17 sprouty homolog 4 (Drosophila) protein-coding 64 chr1 143910860 143913349 + 0 NA intron (NM_207418, intron 1 of 3) intron (NM_207418, intron 1 of 3) 1039 NM_207418 728833 Hs.535577 NM_207418 ENSG00000215784 FAM72D GCUD2 family with sequence similarity 72, member D protein-coding 2753 chr11 44321841 44324294 + 0 NA intron (NM_021926, intron 1 of 3) intron (NM_021926, intron 1 of 3) 8649 NM_021926 60529 Hs.436055 XR_242817 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 1473 chr10 33410234 33416894 + 0 NA Intergenic AluJr|SINE|Alu -166271 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 881 chr3 128134589 128137152 + 0 NA Intergenic L2a|LINE|L2 -46567 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 RP11-475N22.2 DNAJB8 antisense RNA 1 ncRNA 2461 chr8 48280502 48285208 + 0 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 109385 NM_001080394 23514 Hs.381058 XM_005251189 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 3186 chr8 67256570 67258004 + 0 NA Intergenic Intergenic 83925 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RP11-346I3.4 - uncharacterized LOC100505676 ncRNA 45 chr1 80999084 81000144 + 0 NA Intergenic Intergenic -1266468 NM_012302 23266 Hs.649282 XM_005270666 ENSG00000117114 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 405 chr15 69595924 69598937 + 0 NA intron (NM_017705, intron 1 of 8) MER20|DNA|hAT-Charlie 6136 NM_017705 54852 Hs.591096 XM_005254494 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member V protein-coding 507 chr17 76332893 76334222 + 0 NA Intergenic Intergenic 22603 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 1173 chr8 25051649 25054252 + 0 NA intron (NM_024940, intron 1 of 51) L2b|LINE|L2 10663 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1963 chr19 16270810 16274613 + 0 NA intron (NM_054113, intron 5 of 5) AluSz6|SINE|Alu 11575 NM_054113 117286 Hs.255432 XM_005259728 ENSG00000141977 CIB3 KIP3 calcium and integrin binding family member 3 protein-coding 309 chr12 116945568 116947186 + 0 NA Intergenic CpG -24850 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 1734 chr14 102727791 102732094 + 0 NA exon (NM_014226, exon 4 of 12) exon (NM_014226, exon 4 of 12) -22984 NR_073541 5891 Hs.104119 NM_001272011 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1 MOK protein kinase protein-coding 2085 chr20 47996547 47999384 + 0 NA intron (NM_004975, intron 1 of 1) AluSq2|SINE|Alu 100745 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 1733 chr14 102093198 102095902 + 0 NA Intergenic Intergenic 66862 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 deiodinase, iodothyronine, type III protein-coding 3230 chr9 117047132 117048516 + 0 NA intron (NM_032888, intron 41 of 60) intron (NM_032888, intron 41 of 60) -37479 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|ORM orosomucoid 1 protein-coding 2113 chr22 45071779 45074276 + 0 NA 5' UTR (NM_001198721, exon 1 of 10) 5' UTR (NM_001198721, exon 1 of 10) 339 NM_001017530 55615 Hs.102336 XM_005261672 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 (renal) protein-coding 2153 chr3 64536368 64538937 + 0 NA intron (NM_182920, intron 30 of 39) L2b|LINE|L2 -9370 NR_110151 101929335 Hs.476604 XR_245235 RP11-14D22.5 - uncharacterized LOC101929335 ncRNA 1258 chr8 126437651 126440192 + 0 NA Intergenic LTR33A|LTR|ERVL -3642 NM_025195 10221 Hs.444947 XM_005250752 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 824 chr22 38613856 38615406 + 0 NA TTS (NM_001195072) TTS (NM_001195072) 15604 NM_001161573 23764 Hs.517617 NM_001161572 ENSG00000185022 MAFF U-MAF|hMafF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F protein-coding 120 chr10 34792798 34794749 + 0 NA intron (NM_001184790, intron 3 of 22) intron (NM_001184790, intron 3 of 22) 310480 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2568 chr8 124405151 124409661 + 0 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 1299 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family, AAA domain containing 2 protein-coding 1148 chr8 17623329 17624380 + 0 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 34572 NM_001001924 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2841 chr16 69073033 69075274 + 0 NA intron (NM_024562, intron 16 of 17) intron (NM_024562, intron 16 of 17) -65314 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 2386 chr7 83820473 83826168 + 0 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 897 NM_006080 10371 Hs.252451 XM_005250110 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 2313 chr5 92279737 92282991 + 0 NA Intergenic Intergenic 625135 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 254 chr12 9874031 9874718 + 0 NA TTS (NM_172004) TTS (NM_172004) 11521 NM_172004 160365 Hs.734740 NM_001253750 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin-like 1 protein-coding 392 chr15 41452564 41453723 + 0 NA Intergenic Intergenic -44699 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 1321 chr9 131987933 131988494 + 0 NA Intergenic Intergenic -47673 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5-like protein-coding 2242 chr4 75555044 75561545 + 0 NA Intergenic Intergenic 77665 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 2442 chr8 8160744 8183651 + 0 NA Intergenic Intergenic 67060 NM_001080826 157285 Hs.657673 XM_005272369 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 2254 chr4 102150549 102153771 + 0 NA intron (NM_000944, intron 1 of 13) Charlie2a|DNA|hAT-Charlie 9869 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA mir-8066 ncRNA 1987 chr2 43267190 43271664 + 0 NA Intergenic Intergenic 184318 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 813 chr22 24601429 24602079 + 0 NA Intergenic LTR9B|LTR|ERV1 24310 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 2014 chr2 42343237 42346389 + 0 NA Intergenic Intergenic -51677 NM_001145076 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 2602 chr9 14219873 14223052 + 0 NA intron (NM_001190737, intron 2 of 10) MIRc|SINE|MIR -40661 NM_001282787 4781 Hs.644095 XM_005251467 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 644 chr19 37063703 37064953 + 0 NA promoter-TSS (NM_020951) promoter-TSS (NM_020951) -131 NM_020951 57711 Hs.654960 NM_001145649 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 2477 chr8 129087944 129091273 + 0 NA intron (NR_003367, intron 5 of 7) intron (NR_003367, intron 5 of 7) 28210 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 851 chr3 15647549 15649988 + 0 NA intron (NM_001281725, intron 1 of 3) intron (NM_001281725, intron 1 of 3) 5292 NM_001281725 686 Hs.517830 XM_005265414 ENSG00000169814 BTD - biotinidase protein-coding 1820 chr16 15489222 15490771 + 0 NA exon (NM_001128423, exon 1 of 4) exon (NM_001128423, exon 1 of 4) 385 NM_001128423 255027 Hs.720673 XM_005255235 MPV17L M-LPH|MLPH1|MLPH2|MPV17L1 MPV17 mitochondrial membrane protein-like protein-coding 399 chr15 58760787 58764222 + 0 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) 38329 NM_000236 3990 Hs.654472 XM_005254372 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase, hepatic protein-coding 2296 chr5 36493444 36497174 + 0 NA Intergenic Intergenic -111148 NM_001166696 6507 Hs.481918 XM_005248342 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 2110 chr22 30096212 30100285 + 0 NA Intergenic Intergenic -18096 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 1811 chr16 9169522 9173145 + 0 NA Intergenic Intergenic -14204 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 436 chr16 69139004 69141360 + 0 NA promoter-TSS (NM_138612) promoter-TSS (NM_138612) 53 NM_138612 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 1342 chrX 47930351 47931418 + 0 NA promoter-TSS (NM_001037735) promoter-TSS (NM_001037735) 141 NM_001190255 57232 Hs.650883 NM_001037735 ENSG00000221994 ZNF630 dJ54B20.2 zinc finger protein 630 protein-coding 2457 chr8 32179863 32195100 + 0 NA intron (NM_013962, intron 1 of 4) AluJr|SINE|Alu -110781 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 1968 chr19 36302342 36304603 + 0 NA intron (NM_021232, intron 2 of 10) intron (NM_021232, intron 2 of 10) 729 NM_021232 58510 Hs.515366 XM_005259123 ENSG00000250799 PRODH2 HSPOX1 proline dehydrogenase (oxidase) 2 protein-coding 1802 chr16 68991725 68994799 + 0 NA intron (NM_024562, intron 14 of 17) AluSg|SINE|Alu 115753 NM_024562 79613 Hs.13526 XR_243424 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog (Drosophila) protein-coding 94 chr10 5631794 5632998 + 0 NA Intergenic Intergenic 65472 NM_005185 810 Hs.239600 XM_005252613 ENSG00000178363 CALML3 CLP calmodulin-like 3 protein-coding 213 chr11 65680188 65681036 + 0 NA Intergenic Intergenic 5919 NM_031450 83638 Hs.433573 NM_001135635 ENSG00000175573 C11orf68 BLES03|P5326 chromosome 11 open reading frame 68 protein-coding 2775 chr11 122576797 122580940 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 52470 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 1450 chr10 22330550 22332960 + 0 NA Intergenic Intergenic -39105 NM_022365 64215 Hs.499000 XM_005252554 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ (Hsp40) homolog, subfamily C, member 1 protein-coding 3011 chr3 177530235 177532267 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 371542 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 RP11-335L9.1 long intergenic non-protein coding RNA 578 ncRNA 2863 chr17 1638912 1640669 + 0 NA intron (NM_152348, intron 10 of 10) intron (NM_152348, intron 10 of 10) -6340 NM_001165921 5345 Hs.159509 XM_005256698 ENSG00000167711 SERPINF2 A2AP|AAP|ALPHA-2-PI|API|PLI serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 protein-coding 2668 chrY 145219 149544 + 0 NA promoter-TSS (NM_018390) promoter-TSS (NM_018390) -680 NM_018390 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 568 chr17 76209762 76212268 + 0 NA intron (NM_001012270, intron 2 of 2) intron (NM_001012270, intron 2 of 2) 738 NM_001012270 332 Hs.744872 XR_243654 ENSG00000089685 BIRC5 API4|EPR-1 baculoviral IAP repeat containing 5 protein-coding 3250 chrX 48350190 48352731 + 0 NA Intergenic AluSp|SINE|Alu -15887 NM_022825 64840 Hs.386453 XM_005272635 ENSG00000102312 PORCN DHOF|FODH|MG61|PORC|PPN porcupine homolog (Drosophila) protein-coding 3098 chr7 77463168 77464902 + 0 NA intron (NM_001127360, intron 1 of 8) MIR3|SINE|MIR -5412 NM_001127359 57157 Hs.601884 XM_005250508 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 2273 chr5 173930012 173933062 + 0 NA Intergenic Intergenic -220038 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 2411 chr7 68263432 68265957 + 0 NA Intergenic LTR39|LTR|ERV1 797787 NR_108105 100507468 Hs.362492 XR_108828 LOC100507468 - uncharacterized LOC100507468 ncRNA 1129 chr8 128226371 128238124 + 0 NA promoter-TSS (NR_108049) promoter-TSS (NR_108049) -734 NR_108049 100507056 Hs.343864 XR_108886 ENSG00000247844 CCAT1 - colon cancer associated transcript 1 (non-protein coding) ncRNA 791 chr21 43169983 43173300 + 0 NA intron (NM_020639, intron 2 of 7) intron (NM_020639, intron 2 of 7) -4640 NR_106872 102465488 NR_106872 MIR6814 hsa-mir-6814 microRNA mir-6814 ncRNA 1143 chr8 11734184 11735780 + 0 NA Intergenic AluSx1|SINE|Alu -9336 NM_147782 1508 Hs.520898 XM_005272367 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 1355 chrY 127772 128361 + 0 NA Intergenic CpG -14925 NR_028057 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 2848 chr16 500044 502623 + 0 NA intron (NM_014700, intron 1 of 13) C-rich|Low_complexity|Low_complexity -23517 NM_001142272 9727 Hs.531642 XM_005255713 ENSG00000090565 RAB11FIP3 CART1|Rab11-FIP3 RAB11 family interacting protein 3 (class II) protein-coding 2231 chr4 8389045 8390859 + 0 NA intron (NM_001101667, intron 13 of 16) intron (NM_001101667, intron 13 of 16) 52500 NM_001101667 8310 Hs.479122 XM_005248011 ENSG00000087008 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 3231 chr9 114834576 114837843 + 0 NA intron (NM_001282640, intron 12 of 17) intron (NM_001282640, intron 12 of 17) 101368 NM_022486 64420 Hs.494827 XM_005252132 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 3095 chr6 148460771 148463472 + 0 NA Intergenic HAL1|LINE|L1 -201608 NM_015278 23328 Hs.193133 XM_005266874 ENSG00000111961 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 1961 chr19 14443926 14445921 + 0 NA Intergenic AluY|SINE|Alu -47033 NM_078481 976 Hs.466039 XM_005260170 ENSG00000123146 CD97 TM7LN1 CD97 molecule protein-coding 386 chr15 36792977 36794208 + 0 NA Intergenic Intergenic -78220 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 916 chr4 74969428 74970401 + 0 NA Intergenic Intergenic -4917 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 chemokine (C-X-C motif) ligand 2 protein-coding 2043 chr2 187405965 187411093 + 0 NA Intergenic Intergenic -46261 NM_002210 3685 Hs.436873 XM_005246536 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin, alpha V protein-coding 1457 chr10 34812908 34819210 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 288194 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 200 chr11 62239479 62240946 + 0 NA intron (NM_024060, intron 5 of 5) L1MB2|LINE|L1 53705 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 1261 chr8 128978480 128985581 + 0 NA intron (NR_003367, intron 2 of 7) MIRb|SINE|MIR 9151 NR_031610 100302161 NR_031610 ENSG00000221771 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 1352 chrX 150012910 150013567 + 0 NA intron (NM_031462, intron 1 of 10) intron (NM_031462, intron 1 of 10) 54051 NM_001184808 83692 Hs.522805 XM_005274757 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 329 chr13 109429589 109431204 + 0 NA intron (NM_015011, intron 4 of 34) ERVL-E-int|LTR|ERVL 148825 NM_001198950 23026 Hs.656587 NM_001198950 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3 myosin XVI protein-coding 525 chr17 18984785 18988107 + 0 NA Intergenic Intergenic -36110 NM_006613 10750 Hs.567416 XM_005256425 GRAP - GRB2-related adaptor protein protein-coding 2970 chr22 30583522 30587672 + 0 NA Intergenic Intergenic 57243 NM_001257135 3976 Hs.2250 XM_005261601 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 1621 chr12 116929182 116936792 + 0 NA Intergenic MIRb|SINE|MIR -38240 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 27 chr1 9472197 9474349 + 0 NA Intergenic Intergenic 15702 NR_104623 100506022 Hs.568596 XR_109872 LOC100506022 - uncharacterized LOC100506022 ncRNA 787 chr20 55605398 55606985 + 0 NA Intergenic MIR|SINE|MIR 235516 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 2331 chr6 3013191 3014943 + 0 NA intron (NM_000904, intron 4 of 6) intron (NM_000904, intron 4 of 6) 10938 NR_033884 401233 Hs.745279 NM_001013680 HTATSF1P2 - HIV-1 Tat specific factor 1 pseudogene 2 pseudo 1902 chr17 76309321 76316090 + 0 NA Intergenic Intergenic -38132 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 RP11-219G17.4 - uncharacterized LOC100996291 ncRNA 1561 chr11 34996709 35001165 + 0 NA intron (NM_001135024, intron 7 of 10) intron (NM_001135024, intron 7 of 10) 35553 NR_039836 100616437 NR_039836 MIR1343 - microRNA 1343 ncRNA 161 chr11 317975 319629 + 0 NA TTS (NM_021034) TTS (NM_021034) 2112 NR_049759 10410 Hs.374650 NM_021034 ENSG00000142089 IFITM3 1-8U|DSPA2b|IP15 interferon induced transmembrane protein 3 protein-coding 1866 chr17 70694525 70700352 + 0 NA intron (NM_139177, intron 7 of 9) L3b|LINE|CR1 -60827 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 - long intergenic non-protein coding RNA 511 ncRNA 2001 chr2 9939279 9943410 + 0 NA Intergenic Intergenic -42227 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding 3216 chr8 129221134 129224353 + 0 NA Intergenic Intergenic 60381 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 1310 chr9 77385327 77386215 + 0 NA intron (NM_017662, intron 25 of 38) L2a|LINE|L2 116492 NM_001177311 140803 Hs.272225 XM_005251714 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel, subfamily M, member 6 protein-coding 109 chr10 33431569 33433057 + 0 NA Intergenic Intergenic -185020 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 2115 chr22 21159603 21162881 + 0 NA intron (NM_058004, intron 10 of 54) AluSz|SINE|Alu 32859 NM_000185 3053 Hs.474270 XM_005261597 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 protein-coding 2318 chr5 106794746 106799038 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 209704 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 2651 chrX 46233353 46237039 + 0 NA Intergenic Intergenic -71428 NM_001129899 55634 Hs.632800 XM_005272625 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 1239 chr8 99952765 99954385 + 0 NA intron (NM_001256312, intron 1 of 12) CpG 1224 NM_001256312 6788 Hs.492333 XM_005251033 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 3035 chr4 75563678 75566752 + 0 NA Intergenic Tigger4|DNA|TcMar-Tigger 84586 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 2764 chr11 74517049 74518145 + 0 NA intron (NM_001098638, intron 2 of 5) L1ME3A|LINE|L1 57684 NM_001098638 254225 Hs.745050 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 2797 chr13 73620707 73623164 + 0 NA Intergenic AluSx|SINE|Alu -7179 NM_001286818 688 Hs.508234 XM_005266508 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel-like factor 5 (intestinal) protein-coding 769 chr20 43028956 43030669 + 0 NA promoter-TSS (NM_001258355) promoter-TSS (NM_001258355) -84 NM_178850 3172 Hs.116462 XM_005260407 ENSG00000101076 HNF4A HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4, alpha protein-coding 1556 chr11 27902139 27906032 + 0 NA Intergenic Intergenic -160480 NM_170731 627 Hs.502182 XM_005253060 ENSG00000176697 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 1181 chr8 25316179 25319272 + 0 NA intron (NM_152562, intron 1 of 14) intron (NM_152562, intron 1 of 14) 1212 NM_152562 157313 Hs.33366 XM_005273417 ENSG00000184661 CDCA2 Repo-Man cell division cycle associated 2 protein-coding 1809 chr16 1972667 1976938 + 0 NA Intergenic Intergenic -6571 NM_001009606 64711 Hs.670144 NM_001009606 ENSG00000162040 HS3ST6 HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 protein-coding 803 chr22 38157303 38158926 + 0 NA intron (NM_001039141, intron 17 of 23) AluJr|SINE|Alu 15873 NM_007032 11078 Hs.533030 XM_005261316 ENSG00000100106 TRIOBP DFNB28|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 2744 chr11 68139143 68142586 + 0 NA intron (NM_002335, intron 5 of 22) intron (NM_002335, intron 5 of 22) 60756 NM_002335 4041 Hs.6347 XM_005273994 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2 low density lipoprotein receptor-related protein 5 protein-coding 2559 chr8 102701669 102704193 + 0 NA intron (NM_001040628, intron 7 of 7) AT_rich|Low_complexity|Low_complexity 100508 NM_032041 83988 Hs.492427 XM_005251078 ENSG00000104490 NCALD - neurocalcin delta protein-coding 3199 chr8 95416346 95419297 + 0 NA intron (NM_001205263, intron 3 of 12) intron (NM_001205263, intron 3 of 12) 31359 NM_001205263 25788 Hs.744229 NM_001205262 ENSG00000197275 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 1766 chr15 53877561 53885013 + 0 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) -47987 NR_102335 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 60 chr1 114521484 114522240 + 0 NA promoter-TSS (NM_001286353) promoter-TSS (NM_001286353) -151 NM_001286352 56944 Hs.9315 XM_005271049 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin-like 3 protein-coding 1245 chr8 103806119 103808413 + 0 NA Intergenic Intergenic 69131 NM_148174 51582 Hs.459106 XM_005250967 ENSG00000155096 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 1400 chr1 24609579 24611861 + 0 NA Intergenic Intergenic -35092 NM_198173 57822 Hs.657920 NM_001195010 ENSG00000158055 GRHL3 SOM|TFCP2L4 grainyhead-like 3 (Drosophila) protein-coding 1067 chr7 11797667 11799060 + 0 NA intron (NM_015204, intron 1 of 26) L1MEd|LINE|L1 73461 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 691 chr2 28581037 28584057 + 0 NA Intergenic Intergenic -33232 NM_005253 2355 Hs.596972 XM_005264231 FOSL2 FRA2 FOS-like antigen 2 protein-coding 2615 chr9 43373613 43383205 + 0 NA Intergenic MLT2B4|LTR|ERVL -232925 NR_027472 642929 Hs.584288 NR_027472 RP11-327I22.6 - general transcription factor II, i pseudogene pseudo 1676 chr13 109428371 109432265 + 0 NA intron (NM_015011, intron 4 of 34) LTR41|LTR|ERVL 148747 NM_001198950 23026 Hs.656587 NM_001198950 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3 myosin XVI protein-coding 1388 chr1 3457827 3461434 + 0 NA intron (NM_001409, intron 4 of 36) intron (NM_001409, intron 4 of 36) 17724 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 3153 chr8 19064803 19066075 + 0 NA intron (NR_038919, intron 3 of 4) L1PA10|LINE|L1 37593 NR_038919 100128993 Hs.697742 XR_247118 RP11-1080G15.1 - uncharacterized LOC100128993 ncRNA 3134 chr8 8141244 8143256 + 0 NA Intergenic LTR78|LTR|ERV1 56158 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 346 chr14 35161912 35163251 + 0 NA Intergenic LTR1|LTR|ERV1 20442 NM_021914 1073 Hs.180141 NM_001243645 ENSG00000165410 CFL2 NEM7 cofilin 2 (muscle) protein-coding 3085 chr6 45593036 45594839 + 0 NA Intergenic Intergenic 203623 NM_001278478 860 Hs.535845 NM_001015051 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 911 chr4 72415312 72417211 + 0 NA intron (NM_003759, intron 17 of 22) intron (NM_003759, intron 17 of 22) 211491 NM_003759 8671 Hs.5462 XM_005265703 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|pNBC solute carrier family 4 (sodium bicarbonate cotransporter), member 4 protein-coding 3171 chr8 48595188 48597430 + 0 NA intron (NR_104581, intron 8 of 16) intron (NR_104581, intron 8 of 16) 54417 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 427 chr16 3029088 3031871 + 0 NA promoter-TSS (NM_004203) promoter-TSS (NM_004203) 61 NM_004203 9088 Hs.732385 XM_005255674 ENSG00000127564 PKMYT1 MYT1 protein kinase, membrane associated tyrosine/threonine 1 protein-coding 2072 chr20 1395537 1398364 + 0 NA Intergenic Intergenic -23134 NM_000801 2280 Hs.700839 XM_005260673 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FK506 binding protein 1A, 12kDa protein-coding 3121 chr7 76080926 76083905 + 0 NA Intergenic AluSx|SINE|Alu -8557 NM_001102594 113878 Hs.187058 XM_005250131 ENSG00000091073 DTX2 RNF58 deltex homolog 2 (Drosophila) protein-coding 82 chr1 244489441 244490928 + 0 NA Intergenic L2|LINE|L2 -25753 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 2202 chr3 165176791 165181327 + 0 NA Intergenic Intergenic -264590 NM_014926 22865 Hs.101745 XM_005247230 ENSG00000121871 SLITRK3 - SLIT and NTRK-like family, member 3 protein-coding 650 chr19 40466025 40467773 + 0 NA Intergenic L2b|LINE|L2 -10013 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome (prosome, macropain) 26S subunit, ATPase, 4 protein-coding 1154 chr8 17762528 17763402 + 0 NA Intergenic LTR85b|LTR|Gypsy? -9918 NM_004467 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 2624 chr9 84241312 84245251 + 0 NA intron (NM_005077, intron 8 of 19) MIRb|SINE|MIR 60315 NM_005077 7088 Hs.689805 XM_005252151 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 895 chr3 171666257 171669440 + 0 NA Intergenic Intergenic -89570 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 1763 chr15 40452735 40455073 + 0 NA intron (NM_001211, intron 1 of 22) intron (NM_001211, intron 1 of 22) 694 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 2965 chr22 21540855 21543592 + 0 NA intron (NR_108107, intron 12 of 12) intron (NR_108107, intron 12 of 12) 21031 NR_108107 642633 XM_005261897 FAM230B - family with sequence similarity 230, member B (non-protein coding) ncRNA 69 chr1 186680768 186681404 + 0 NA Intergenic MLT1A1|LTR|ERVL-MaLR -31527 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 1910 chr18 24048420 24053237 + 0 NA intron (NM_001258221, intron 3 of 4) intron (NM_001258221, intron 3 of 4) 77672 NM_001142730 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 1157 chr8 19394033 19395450 + 0 NA intron (NR_024040, intron 2 of 9) MER72B|LTR|ERV1 65315 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 1470 chr10 33264143 33267218 + 0 NA Intergenic Intergenic -18387 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 2762 chr11 69654833 69656374 + 0 NA Intergenic Intergenic -21411 NM_005247 2248 Hs.37092 NM_005247 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 3076 chr5 178204602 178207446 + 0 NA Intergenic LTR22|LTR|ERVK -2747 NR_024035 729522 Hs.382790 NR_024035 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 224 chr11 69452745 69460789 + 0 NA intron (NM_053056, intron 1 of 4) CpG-4502 894 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 2711 chr1 222130657 222132778 + 0 NA Intergenic LTR7C|LTR|ERV1 -216201 NM_144729 11221 Hs.732301 XM_005273025 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 2100 chr21 35132666 35135449 + 0 NA intron (NM_001001132, intron 8 of 29) intron (NM_001001132, intron 8 of 29) 119273 NM_003024 6453 Hs.160324 XM_005261026 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 (SH3 domain protein) protein-coding 1982 chr19 55684246 55686093 + 0 NA intron (NM_003180, intron 8 of 8) CpG 6551 NM_003180 6861 Hs.631566 XM_005259184 SYT5 - synaptotagmin V protein-coding 1006 chr6 47119995 47121802 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -110816 NM_153840 266977 Hs.733762 XM_005249004 ENSG00000153292 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 2393 chr7 6332160 6336248 + 0 NA Intergenic L1MB5|LINE|L1 -21962 NM_004227 9265 Hs.487479 XM_005249905 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3 cytohesin 3 protein-coding 426 chr16 162677 164299 + 0 NA intron (NM_001039476, intron 2 of 10) intron (NM_001039476, intron 2 of 10) 25209 NM_001243248 8131 Hs.19699 NM_001039476 ENSG00000103148 NPRL3 C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11 nitrogen permease regulator-like 3 (S. cerevisiae) protein-coding 996 chr5 175908018 175909669 + 0 NA intron (NM_014613, intron 2 of 10) L1M4|LINE|L1 33487 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 3222 chr8 134047887 134050471 + 0 NA 3' UTR (NM_001282965, exon 7 of 7) 3' UTR (NM_001282965, exon 7 of 7) 9647 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA mir-7848 ncRNA 3005 chr3 129305439 129307783 + 0 NA intron (NM_015103, intron 2 of 35) L2c|LINE|L2 18971 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 1435 chr1 200304680 200307500 + 0 NA Intergenic Intergenic 36830 NR_040064 554279 Hs.575858 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 1840 chr16 69081754 69084994 + 0 NA intron (NM_024562, intron 17 of 17) AluSq2|SINE|Alu -56093 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 279 chr12 66217400 66220288 + 0 NA 5' UTR (NM_003484, exon 1 of 4) 5' UTR (NM_003484, exon 1 of 4) 604 NM_003483 8091 Hs.505924 XM_005269164 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 2408 chr7 47711301 47716741 + 0 NA Intergenic Intergenic 19179 NM_001123065 401335 Hs.520816 NM_001123065 ENSG00000221845 C7orf65 - chromosome 7 open reading frame 65 protein-coding 2069 chr20 46066855 46073113 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -60617 NM_001174087 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 956 chr5 36494713 36495846 + 0 NA Intergenic Intergenic -111178 NM_001166696 6507 Hs.481918 XM_005248342 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 483 chr16 63647945 63648902 + 0 NA Intergenic Intergenic 1507496 NM_001797 1009 Hs.116471 XM_005255761 CDH11 CAD11|CDHOB|OB|OSF-4 cadherin 11, type 2, OB-cadherin (osteoblast) protein-coding 498 chr16 85207436 85208603 + 0 NA Intergenic Intergenic 37263 NR_033984 400548 Hs.592054 NR_033984 LOC400548 - uncharacterized LOC400548 ncRNA 629 chr19 8679903 8680839 + 0 NA Intergenic Intergenic -4751 NM_030957 81794 Hs.657508 XM_005272498 ENSG00000142303 ADAMTS10 ADAM-TS10|ADAMTS-10|WMS|WMS1 ADAM metallopeptidase with thrombospondin type 1 motif, 10 protein-coding 2055 chr2 228516729 228521091 + 0 NA Intergenic AluSg|SINE|Alu -20874 NM_020161 56918 Hs.283092 NM_001162483 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 1487 chr10 37389820 37394855 + 0 NA Intergenic Intergenic -22448 NM_052997 91074 Hs.373787 XM_005252639 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 372 chr14 105957382 105959004 + 0 NA intron (NM_001134876, intron 2 of 6) CpG-7560 607 NM_001134876 283643 Hs.720306 XM_005267551 ENSG00000185347 C14orf80 - chromosome 14 open reading frame 80 protein-coding 2951 chr20 10286552 10291587 + 0 NA Intergenic AluSx1|SINE|Alu -88915 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 3204 chr8 98556283 98558048 + 0 NA Intergenic L2c|LINE|L2 -99242 NM_178812 92140 Hs.377155 XM_005251098 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 2028 chr2 153210247 153213435 + 0 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 20090 NM_052905 114793 Hs.654630 XM_005246263 ENSG00000157827 FMNL2 FHOD2 formin-like 2 protein-coding 1540 chr11 352360 356703 + 0 NA Intergenic LTR13A|LTR|ERVK -15264 NM_178537 338707 Hs.148074 XM_005252891 ENSG00000182272 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyl transferase 4 protein-coding 3075 chr5 173937573 173942475 + 0 NA Intergenic Intergenic -211551 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 1661 chr12 105054928 105059986 + 0 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 72046 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 1330 chr9 132523710 132525908 + 0 NA Intergenic AluSz|SINE|Alu -9465 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 1284 chr8 142082668 142087197 + 0 NA Intergenic Intergenic -53788 NM_014957 22898 Hs.18166 XM_005250838 ENSG00000105339 DENND3 - DENN/MADD domain containing 3 protein-coding 3041 chr4 111531705 111533089 + 0 NA Intergenic Intergenic 11857 NM_000325 5308 Hs.738484 XM_005263064 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired-like homeodomain 2 protein-coding 1606 chr11 114184305 114188765 + 0 NA Intergenic L2c|LINE|L2 20000 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 2064 chr2 238198701 238202520 + 0 NA Intergenic MIR|SINE|MIR 122240 NM_057167 1293 Hs.233240 XM_005246065 ENSG00000163359 COL6A3 - collagen, type VI, alpha 3 protein-coding 1160 chr8 19459276 19460461 + 0 NA 5' UTR (NM_001130518, exon 1 of 10) 5' UTR (NM_001130518, exon 1 of 10) 188 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 99 chr10 15242032 15242886 + 0 NA Intergenic AluJr|SINE|Alu -31764 NM_004808 9397 Hs.60339 XM_005252642 NMT2 - N-myristoyltransferase 2 protein-coding 869 chr3 47181958 47183687 + 0 NA intron (NM_014159, intron 1 of 20) intron (NM_014159, intron 1 of 20) 22645 NM_014159 29072 Hs.517941 XM_005265094 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HYPB|KMT3A|SET2|p231HBP SET domain containing 2 protein-coding 1592 chr11 69973804 69975492 + 0 NA intron (NM_018043, intron 10 of 25) intron (NM_018043, intron 10 of 25) 43132 NR_030691 55107 Hs.503074 NM_018043 ENSG00000131620 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1, calcium activated chloride channel protein-coding 1933 chr19 3716814 3719758 + 0 NA intron (NM_001267560, intron 1 of 20) AluJb|SINE|Alu -3411 NM_001267561 27134 Hs.25527 XM_005259539 ENSG00000105289 TJP3 ZO-3|ZO3 tight junction protein 3 protein-coding 2022 chr2 98484867 98488408 + 0 NA intron (NM_015348, intron 4 of 40) MLT1E3|LTR|ERVL-MaLR 125717 NM_015348 23505 Hs.469376 XM_005263909 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 790 chr21 41009008 41010162 + 0 NA intron (NM_001278650, intron 1 of 2) intron (NM_001278650, intron 1 of 2) -19662 NM_006057 10317 Hs.733638 XM_005260912 ENSG00000183778 B3GALT5 B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 protein-coding 533 chr17 37122992 37124481 + 0 NA promoter-TSS (NM_001008777) promoter-TSS (NM_001008777) -81 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 2080 chr20 42294930 42299660 + 0 NA intron (NM_002466, intron 1 of 13) intron (NM_002466, intron 1 of 13) 1636 NM_001278610 4605 Hs.179718 NM_001278610 ENSG00000101057 MYBL2 B-MYB|BMYB v-myb avian myeloblastosis viral oncogene homolog-like 2 protein-coding 1122 chr8 48871220 48875067 + 0 NA promoter-TSS (NM_006904) promoter-TSS (NM_006904) 380 NM_005914 4173 Hs.460184 XM_005251234 ENSG00000104738 MCM4 CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 2997 chr3 78926695 78928255 + 0 NA intron (NM_133631, intron 2 of 28) AluSq|SINE|Alu 141134 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 2416 chr7 83773224 83776082 + 0 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 49564 NM_006080 10371 Hs.252451 XM_005250110 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 1697 chr14 56064749 56069019 + 0 NA intron (NM_001079521, intron 1 of 43) intron (NM_001079521, intron 1 of 43) 19959 NR_073128 3895 Hs.509414 NM_001271014 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 (kinesin receptor) protein-coding 1053 chr6 151644753 151647691 + 0 NA promoter-TSS (NM_144497) promoter-TSS (NM_144497) -444 NM_144497 9590 Hs.371240 XM_005267233 ENSG00000131016 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 414 chr15 75411159 75412983 + 0 NA Intergenic L1MD|LINE|L1 -82150 NM_015492 56905 Hs.17936 XM_005254551 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 462 chr16 15644336 15645615 + 0 NA intron (NM_033201, intron 2 of 5) intron (NM_033201, intron 2 of 5) 48852 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 1770 chr15 59396189 59399174 + 0 NA intron (NM_004701, intron 1 of 8) CpG 397 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 2735 chr10 133586679 133589109 + 0 NA Intergenic T-rich|Low_complexity|Low_complexity 34641 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 1209 chr8 41654808 41656154 + 0 NA promoter-TSS (NM_020477) promoter-TSS (NM_020477) -341 NM_020476 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 263 chr12 38450244 38452080 + 0 NA Intergenic AluSz6|SINE|Alu -259395 NM_001013620 144245 Hs.259305 XM_005268665 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 991 chr5 142186233 142187844 + 0 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 36746 NM_001135608 23092 Hs.654668 XM_005268398 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 2985 chr3 42295878 42298856 + 0 NA Intergenic AluJb|SINE|Alu 8072 NM_001174138 885 Hs.458426 XM_005265527 ENSG00000187094 CCK - cholecystokinin protein-coding 2348 chr6 26550247 26551809 + 0 NA Intergenic CpG 12456 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 931 chr4 126649029 126649575 + 0 NA Intergenic Intergenic 220888 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 2246 chr4 87361218 87363524 + 0 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 11912 NM_002753 5602 Hs.125503 XM_005263128 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|RP13-514E23.1|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 615 chr19 608888 609696 + 0 NA intron (NM_001194, intron 4 of 7) intron (NM_001194, intron 4 of 7) 19399 NM_001194 610 Hs.124161 NM_001194 ENSG00000099822 HCN2 BCNG-2|BCNG2|HAC-1 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 protein-coding 476 chr16 51572209 51573929 + 0 NA Intergenic Intergenic -387886 NM_002968 6299 Hs.135787 NM_001127892 ENSG00000103449 SALL1 HSAL1|Sal-1|TBS|ZNF794 spalt-like transcription factor 1 protein-coding 1198 chr8 32180452 32181217 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -117428 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 3210 chr8 110939059 110940557 + 0 NA Intergenic Intergenic 47151 NM_014379 27012 Hs.13285 XM_005250866 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium channel, subfamily V, member 1 protein-coding 1626 chr12 124614439 124616839 + 0 NA intron (NM_001204299, intron 2 of 4) MER112|DNA|hAT-Charlie 157877 NM_001204299 100533183 Hs.524828 NM_001204299 ENSG00000255906 ZNF664-FAM101A - protein FAM101A protein-coding 1409 chr1 55593197 55595498 + 0 NA intron (NM_015306, intron 32 of 67) L2c|LINE|L2 86692 NM_015306 23358 Hs.477009 XM_005270689 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 2219 chr4 95893501 95896962 + 0 NA intron (NM_001203, intron 2 of 12) L1ME4a|LINE|L1 -22152 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2141 chr3 148896148 148899811 + 0 NA intron (NR_046371, intron 13 of 17) intron (NR_046371, intron 13 of 17) 41853 NM_000096 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 2464 chr8 49331900 49334382 + 0 NA Intergenic Intergenic -130986 NR_105002 101929268 Hs.683934 XR_242464 ENSG00000253608 RP11-770E5.1 - uncharacterized LOC101929268 ncRNA 1077 chr7 47211508 47213963 + 0 NA Intergenic Intergenic 409007 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 1716 chr14 55115918 55122257 + 0 NA intron (NM_001161576, intron 1 of 10) intron (NM_001161576, intron 1 of 10) 84757 NM_015589 23034 Hs.733324 XM_005267432 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 293 chr12 90150620 90151314 + 0 NA Intergenic Intergenic 48235 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 RP11-591N1.1 long intergenic non-protein coding RNA 936 ncRNA 2854 chr16 69101601 69105155 + 0 NA intron (NM_024562, intron 17 of 17) intron (NM_024562, intron 17 of 17) -36089 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 1272 chr8 131206479 131208172 + 0 NA intron (NM_018482, intron 5 of 29) intron (NM_018482, intron 5 of 29) 101454 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 1781 chr15 78304035 78306676 + 0 NA exon (NM_144572, exon 9 of 13) exon (NM_144572, exon 9 of 13) -18788 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 1299 chr9 19157716 19158864 + 0 NA Intergenic AluSq2|SINE|Alu -30686 NM_001122 123 Hs.3416 NM_001122 ENSG00000147872 PLIN2 ADFP|ADRP perilipin 2 protein-coding 1663 chr12 109633792 109638440 + 0 NA intron (NM_001093, intron 16 of 51) intron (NM_001093, intron 16 of 51) 58914 NM_001093 32 Hs.234898 XM_005253876 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 2888 chr18 24199310 24201732 + 0 NA intron (NM_001258222, intron 1 of 4) AluJb|SINE|Alu 19787 NM_198991 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 967 chr5 55776299 55777954 + 0 NA intron (NR_104664, intron 1 of 4) CpG 470 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 2157 chr3 118898682 118906373 + 0 NA intron (NM_006952, intron 1 of 7) MLT1D|LTR|ERVL-MaLR 10102 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 1611 chr12 46822895 46827140 + 0 NA Intergenic AluSx1|SINE|Alu -58372 NM_018976 54407 Hs.221847 XM_005268983 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38, member 2 protein-coding 322 chr13 67507404 67508921 + 0 NA intron (NM_203487, intron 2 of 4) intron (NM_203487, intron 2 of 4) -43359 NR_046636 100874086 Hs.738194 XR_245371 ENSG00000225263 PCDH9-AS3 RP11-138D23.2 PCDH9 antisense RNA 3 ncRNA 469 chr16 24711606 24714286 + 0 NA Intergenic AluSx|SINE|Alu -28103 NM_014494 27327 Hs.655057 XM_005255253 ENSG00000090905 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 3046 chr4 175298547 175299709 + 0 NA Intergenic Intergenic -45818 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 635 chr19 14444079 14444889 + 0 NA Intergenic CpG -47472 NM_078481 976 Hs.466039 XM_005260170 ENSG00000123146 CD97 TM7LN1 CD97 molecule protein-coding 1088 chr7 73726556 73727883 + 0 NA intron (NM_032421, intron 1 of 15) intron (NM_032421, intron 1 of 15) 23414 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-GLY domain containing linker protein 2 protein-coding 575 chr17 77906990 77909057 + 0 NA 3' UTR (NM_001271845, exon 8 of 8) 3' UTR (NM_001271845, exon 8 of 8) 16633 NM_001271844 125058 Hs.369819 XM_005257049 ENSG00000167291 TBC1D16 - TBC1 domain family, member 16 protein-coding 1835 chr16 54480087 54483484 + 0 NA Intergenic Intergenic -161407 NM_024336 79191 Hs.499205 XM_005256139 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 1566 chr11 47533042 47538996 + 0 NA intron (NM_001172639, intron 1 of 15) intron (NM_001172639, intron 1 of 15) 9521 NM_001172639 10658 Hs.595333 XM_005252753 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding 979 chr5 91894721 91897550 + 0 NA Intergenic Intergenic 1010364 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 709 chr2 70173394 70174300 + 0 NA Intergenic Intergenic 15550 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 40 chr1 44402272 44403662 + 0 NA TTS (NM_057091) TTS (NM_057091) 3975 NM_057090 9048 Hs.632404 NM_001136215 ENSG00000117407 ARTN ENOVIN|EVN|NBN artemin protein-coding 310 chr12 116970227 116973417 + 0 NA non-coding (NR_027345, exon 2 of 2) non-coding (NR_027345, exon 2 of 2) 582 NR_027346 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 192 chr11 57230450 57232226 + 0 NA intron (NM_178570, intron 1 of 2) intron (NM_178570, intron 1 of 2) 3328 NM_178570 349667 Hs.603388 XM_005273973 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor-like 2 protein-coding 699 chr2 42419765 42421275 + 0 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) 24030 NM_019063 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 1115 chr8 19397669 19399089 + 0 NA intron (NR_024040, intron 2 of 9) L2c|LINE|L2 61677 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 960 chr5 55566551 55567379 + 0 NA Intergenic Intergenic -37779 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 818 chr22 30504129 30505751 + 0 NA intron (NM_152510, intron 5 of 10) CT-rich|Low_complexity|Low_complexity 28487 NM_152510 150280 Hs.120391 XM_005261364 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 2363 chr6 73654946 73662087 + 0 NA intron (NM_001160133, intron 1 of 14) intron (NM_001160133, intron 1 of 14) 18960 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 1038 chr6 45388941 45391363 + 0 NA promoter-TSS (NM_001278478) promoter-TSS (NM_001278478) -162 NM_001278478 860 Hs.535845 NM_001015051 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 2908 chr19 19215808 19217052 + 0 NA exon (NM_178526, exon 5 of 8) exon (NM_178526, exon 5 of 8) 32880 NM_001256766 54929 Hs.631629 XM_005259976 ENSG00000064545 TMEM161A AROS-29 transmembrane protein 161A protein-coding 2293 chr5 28619662 28621825 + 0 NA Intergenic AluSc|SINE|Alu -306234 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 1707 chr14 34549125 34552284 + 0 NA Intergenic Intergenic -130420 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 3103 chr7 83720004 83722328 + 0 NA intron (NM_006080, intron 4 of 16) intron (NM_006080, intron 4 of 16) 103051 NM_006080 10371 Hs.252451 XM_005250110 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 267 chr12 53207496 53208862 + 0 NA promoter-TSS (NM_002272) promoter-TSS (NM_002272) -279 NM_002272 3851 Hs.731814 XM_005268860 ENSG00000170477 KRT4 CK-4|CK4|CYK4|K4 keratin 4 protein-coding 543 chr17 41797445 41802293 + 0 NA Intergenic MER102c|DNA|hAT-Charlie 36287 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|VBCH sclerostin protein-coding 3088 chr6 54748576 54749717 + 0 NA intron (NM_001010872, intron 2 of 4) AluSx|SINE|Alu 37577 NM_001010872 222584 Hs.152423 NM_001010872 FAM83B C6orf143|RP3-523K23.2 family with sequence similarity 83, member B protein-coding 1892 chr17 53166858 53168857 + 0 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) 121731 NM_178509 252983 Hs.35199 XM_005257185 ENSG00000166263 STXBP4 Synip syntaxin binding protein 4 protein-coding 1777 chr15 71437275 71444257 + 0 NA intron (NM_024817, intron 1 of 16) Tigger15a|DNA|TcMar-Tigger 6978 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 2044 chr2 190211496 190213608 + 0 NA Intergenic Intergenic -93607 NM_032168 84128 Hs.399984 XM_005246897 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 354 chr14 58922135 58923319 + 0 NA intron (NM_014749, intron 9 of 29) L1M4|LINE|L1 16328 NM_001244193 9786 Hs.232532 XM_005268242 ENSG00000100578 KIAA0586 Talpid3 KIAA0586 protein-coding 1437 chr1 211847533 211850099 + 0 NA exon (NM_002497, exon 1 of 8) exon (NM_002497, exon 1 of 8) 156 NM_002497 4751 Hs.153704 XM_005273147 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|RP67 NIMA-related kinase 2 protein-coding 2813 chr14 63968734 63972723 + 0 NA intron (NM_001282179, intron 2 of 13) intron (NM_001282179, intron 2 of 13) 4228 NM_001282182 5529 Hs.594347 XM_005267828 PPP2R5E - protein phosphatase 2, regulatory subunit B', epsilon isoform protein-coding 1064 chr7 5811050 5812334 + 0 NA intron (NM_207111, intron 1 of 16) AluSp|SINE|Alu 9669 NM_207111 54476 Hs.689456 XM_005249785 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 2724 chr10 33492610 33495133 + 0 NA intron (NM_001244972, intron 10 of 16) AluSq2|SINE|Alu 129962 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 2517 chr8 29315076 29319387 + 0 NA Intergenic L2c|LINE|L2 -108964 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 757 chr20 5714035 5716468 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -15792 NM_152504 149840 Hs.529340 NM_152504 ENSG00000171984 C20orf196 - chromosome 20 open reading frame 196 protein-coding 2577 chr8 129206765 129211957 + 0 NA Intergenic Intergenic 46999 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 9 chr1 110525164 110527232 + 0 NA Intergenic LTR85b|LTR|Gypsy? -1189 NM_006621 10768 Hs.743973 XM_005270388 ENSG00000168710 AHCYL1 DCAL|IRBIT|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 2734 chr10 114662619 114665540 + 0 NA Intergenic MIRc|SINE|MIR -45930 NM_001198528 6934 Hs.593995 XM_005270071 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7-like 2 (T-cell specific, HMG-box) protein-coding 1217 chr8 62595890 62598760 + 0 NA intron (NM_032466, intron 1 of 13) intron (NM_032466, intron 1 of 13) 5083 NM_001164752 444 Hs.332422 XM_005251235 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 3240 chr9 113559351 113561060 + 0 NA intron (NM_005592, intron 13 of 13) intron (NM_005592, intron 13 of 13) 129154 NM_001166280 4593 Hs.521653 XM_005251994 ENSG00000030304 MUSK - muscle, skeletal, receptor tyrosine kinase protein-coding 1740 chr15 69593322 69602656 + 0 NA intron (NM_017705, intron 1 of 8) intron (NM_017705, intron 1 of 8) 6695 NM_017705 54852 Hs.591096 XM_005254494 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member V protein-coding 1600 chr11 94464663 94468777 + 0 NA Intergenic Intergenic -34788 NM_130847 154810 Hs.503594 XM_005273798 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 603 chr19 1178663 1185186 + 0 NA Intergenic Intergenic -7642 NM_014963 22904 Hs.408708 XM_005259519 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 2750 chr11 28068077 28074556 + 0 NA intron (NM_031217, intron 13 of 16) intron (NM_031217, intron 13 of 16) -7046 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 2527 chr8 38297913 38304647 + 0 NA intron (NM_001174064, intron 2 of 18) L1MB4|LINE|L1 24083 NM_001174067 2260 Hs.264887 XM_005273449 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 90 chr10 34713001 34717893 + 0 NA intron (NM_001184790, intron 4 of 22) intron (NM_001184790, intron 4 of 22) 388806 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1850 chr17 15846603 15873493 + 0 NA intron (NM_000676, intron 1 of 1) AluSq2|SINE|Alu 11817 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 565 chr17 73073795 73076534 + 0 NA Intergenic Intergenic -8658 NM_001271765 9121 Hs.592095 XM_005257790 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 (monocarboxylate transporter), member 5 protein-coding 1346 chrX 119868214 119869366 + 0 NA Intergenic Intergenic -104785 NM_152692 29071 Hs.643920 NM_001011551 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|MST143|TNPS C1GALT1-specific chaperone 1 protein-coding 3102 chr7 79133628 79137311 + 0 NA Intergenic Intergenic 52193 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 1964 chr19 17467540 17471017 + 0 NA intron (NM_031310, intron 5 of 5) intron (NM_031310, intron 5 of 5) 18859 NM_031310 83483 Hs.107125 NM_031310 ENSG00000130300 PLVAP FELS|PV-1|PV1|gp68 plasmalemma vesicle associated protein protein-coding 3247 chrX 140065205 140067555 + 0 NA Intergenic Intergenic -18376 NM_032461 728695 Hs.711489 NM_032461 ENSG00000235604 SPANXB1 B1|CT11.2|SPANX-B|SPANXB SPANX family, member B1 protein-coding 850 chr3 12464720 12466708 + 0 NA intron (NM_015869, intron 6 of 6) intron (NM_015869, intron 6 of 6) -60217 NM_001145393 80746 Hs.335550 XM_005265495 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L TSEN2 tRNA splicing endonuclease subunit protein-coding 2818 chr14 101878395 101880206 + 0 NA Intergenic Intergenic 142713 NR_002770 64150 Hs.745484 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 2424 chr7 116103362 116107206 + 0 NA Intergenic Intergenic -34371 NM_001206747 858 Hs.603096 NM_001206747 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 891 chr3 165177954 165179106 + 0 NA Intergenic Intergenic -264061 NM_014926 22865 Hs.101745 XM_005247230 ENSG00000121871 SLITRK3 - SLIT and NTRK-like family, member 3 protein-coding 1004 chr6 26024356 26035513 + 0 NA Intergenic MER34|LTR|ERV1 2354 NM_003537 8358 Hs.533292 NM_003537 ENSG00000124693 HIST1H3B H3/l|H3FL histone cluster 1, H3b protein-coding 2106 chr21 45714056 45716602 + 0 NA intron (NM_000383, intron 12 of 13) intron (NM_000383, intron 12 of 13) -4596 NR_024108 5211 Hs.255093 XM_005261134 ENSG00000141959 PFKL PFK-B phosphofructokinase, liver protein-coding 2696 chr1 114649472 114651182 + 0 NA intron (NM_001270805, intron 3 of 7) intron (NM_001270805, intron 3 of 7) 44735 NM_205848 148281 Hs.736999 XM_005270496 ENSG00000134207 SYT6 sytVI synaptotagmin VI protein-coding 1360 chr1 80998343 81006487 + 0 NA Intergenic Intergenic -1263667 NM_012302 23266 Hs.649282 XM_005270666 ENSG00000117114 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 233 chr11 76902407 76903421 + 0 NA intron (NM_001127180, intron 30 of 48) intron (NM_001127180, intron 30 of 48) 63598 NM_001127180 4647 Hs.370421 XM_005274011 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 1013 chr6 24387723 24390182 + 0 NA Intergenic Intergenic -5432 NM_001195610 51473 Hs.61345 NM_001195610 ENSG00000146038 DCDC2 DCDC2A|RU2|RU2S doublecortin domain containing 2 protein-coding 1490 chr10 65274081 65276099 + 0 NA Intergenic L1MC1|LINE|L1 -6033 NM_001001330 221035 Hs.499833 XM_005269620 ENSG00000165476 REEP3 C10orf74 receptor accessory protein 3 protein-coding 2198 chr3 149047614 149055431 + 0 NA promoter-TSS (NM_001184723) promoter-TSS (NM_001184723) 26 NM_138786 116441 Hs.22026 NM_001184723 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 1693 chr14 29044536 29051080 + 0 NA Intergenic Intergenic -188470 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 316 chr12 123162393 123165102 + 0 NA Intergenic Intergenic 24157 NM_177551 338442 Hs.524812 XM_005253569 ENSG00000182782 HCAR2 GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g hydroxycarboxylic acid receptor 2 protein-coding 2947 chr2 238085961 238087978 + 0 NA Intergenic Intergenic 92885 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 1806 chr16 84629773 84644354 + 0 NA intron (NM_021149, intron 2 of 3) intron (NM_021149, intron 2 of 3) 14639 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin-like 1 (Dictyostelium) protein-coding 2288 chr5 10590097 10591831 + 0 NA intron (NM_001164440, intron 1 of 3) L1MEg|LINE|L1 26529 NM_001164440 651746 Hs.26039 XM_005248343 ANKRD33B RP11-215G15.5 ankyrin repeat domain 33B protein-coding 1738 chr15 53999574 54004011 + 0 NA intron (NM_182758, intron 9 of 19) intron (NM_182758, intron 9 of 19) 50067 NM_182758 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 2025 chr2 121152799 121159400 + 0 NA Intergenic Intergenic 52380 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin, beta B protein-coding 1370 chr1 98491023 98501892 + 0 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 14450 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 2954 chr20 18859131 18861073 + 0 NA Intergenic L1PB1|LINE|L1 -49263 NM_001242671 100128496 Hs.664484 NM_001242671 ENSG00000149443 C20orf78 dJ1068E13.1 chromosome 20 open reading frame 78 protein-coding 11 chr1 147504634 147506257 + 0 NA Intergenic Intergenic -21114 NR_003377 728939 Hs.696575 NR_003377 ENSG00000215860 PDZK1P1 - PDZ domain containing 1 pseudogene 1 pseudo 2649 chrX 45362853 45368425 + 0 NA intron (NR_104645, intron 1 of 2) intron (NR_104645, intron 1 of 2) 1006 NR_104644 101927528 Hs.550772 XR_246721 ENSG00000229563 RP11-245M24.1 - uncharacterized LOC101927528 ncRNA 511 chr17 8111923 8115151 + 0 NA exon (NM_001284526, exon 2 of 9) exon (NM_001284526, exon 2 of 9) 407 NM_004217 9212 Hs.442658 XM_005256852 ENSG00000178999 AURKB AIK2|AIM-1|AIM1|ARK2|AurB|IPL1|PPP1R48|STK12|STK5|aurkb-sv1|aurkb-sv2 aurora kinase B protein-coding 842 chr3 48594417 48595582 + 0 NA promoter-TSS (NM_004567) promoter-TSS (NM_004567) -772 NM_004567 5210 Hs.476217 XM_005265228 ENSG00000114268 PFKFB4 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 protein-coding 2367 chr6 94493696 94498075 + 0 NA Intergenic Intergenic 79084 NR_015362 643432 Hs.509936 XR_241850 TSG1 - tumor suppressor TSG1 ncRNA 899 chr3 185825090 185827049 + 0 NA intron (NM_004454, intron 1 of 12) CpG 832 NM_004454 2119 Hs.43697 XM_005247210 ENSG00000244405 ETV5 ERM ets variant 5 protein-coding 3259 chrX 150038647 150041016 + 0 NA intron (NM_031462, intron 1 of 10) intron (NM_031462, intron 1 of 10) 27458 NM_001184808 83692 Hs.522805 XM_005274757 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 2000 chr2 235043324 235048540 + 0 NA Intergenic AluSx|SINE|Alu 86586 NM_006944 6694 Hs.444488 XM_005246102 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 2437 chr8 19393425 19403011 + 0 NA intron (NR_024040, intron 2 of 9) L2c|LINE|L2 61838 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 2531 chr8 41591095 41595269 + 0 NA intron (NM_001142446, intron 2 of 42) intron (NM_001142446, intron 2 of 42) 61958 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 3131 chr7 151100474 151102427 + 0 NA intron (NM_001284261, intron 1 of 4) intron (NM_001284261, intron 1 of 4) -4797 NR_034012 100131176 Hs.659231 NR_034012 ENSG00000243836 WDR86-AS1 - WDR86 antisense RNA 1 ncRNA 2689 chr1 98552220 98556318 + 0 NA Intergenic Intergenic -39020 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene (non-protein coding) ncRNA 199 chr11 62198695 62199867 + 0 NA Intergenic Intergenic 12774 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 2410 chr7 54878869 54883149 + 0 NA Intergenic Intergenic 54003 NR_110040 100996654 Hs.127991 XR_159054 RP11-745C15.2 - uncharacterized LOC100996654 ncRNA 1979 chr19 54047100 54049650 + 0 NA intron (NM_001253800, intron 2 of 5) L1MD2|LINE|L1 6333 NM_001253800 55422 Hs.185674 XM_005259040 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 1899 chr17 67171234 67172788 + 0 NA intron (NM_080282, intron 23 of 39) MER44B|DNA|TcMar-Tigger -33996 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP-binding cassette, sub-family A (ABC1), member 6 protein-coding 3066 chr5 75752566 75755752 + 0 NA intron (NM_006633, intron 1 of 35) intron (NM_006633, intron 1 of 35) 55079 NM_006633 10788 Hs.291030 XM_005248409 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 1929 chr18 56529443 56533216 + 0 NA intron (NM_018181, intron 1 of 10) intron (NM_018181, intron 1 of 10) 1268 NM_018181 55205 Hs.607676 XM_005266716 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 2485 chr8 144359227 144362392 + 0 NA Intergenic CpG 11202 NM_138465 2738 Hs.400533 XM_005250868 ENSG00000250571 GLI4 HKR4|ZNF928 GLI family zinc finger 4 protein-coding 1737 chr15 41415564 41422430 + 0 NA Intergenic Tigger2a|DNA|TcMar-Tigger -10553 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 1948 chr19 1149771 1159576 + 0 NA intron (NM_014963, intron 1 of 31) intron (NM_014963, intron 1 of 31) 19609 NM_014963 22904 Hs.408708 XM_005259519 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 3143 chr8 6709056 6711230 + 0 NA Intergenic Intergenic -16977 NM_207411 389610 Hs.558840 NM_207411 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK, Kell blood group complex subunit-related family, member 5 protein-coding 795 chr21 17121369 17122611 + 0 NA intron (NM_001283042, intron 1 of 24) intron (NM_001283042, intron 1 of 24) 19646 NM_001283041 29761 Hs.743994 XM_005260946 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 1609 chr12 110492085 110494794 + 0 NA intron (NM_207435, intron 4 of 4) LTR8|LTR|ERV1 12061 NM_207435 400073 Hs.44817 XM_005253882 ENSG00000174456 C12orf76 - chromosome 12 open reading frame 76 protein-coding 794 chr21 17107566 17108951 + 0 NA intron (NM_001283042, intron 1 of 24) L1MEg|LINE|L1 5914 NM_001283041 29761 Hs.743994 XM_005260946 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 944 chr5 318301 319872 + 0 NA intron (NM_001242412, intron 1 of 10) intron (NM_001242412, intron 1 of 10) 14795 NM_001242412 57491 Hs.50823 NM_001242412 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 1780 chr15 75415637 75418074 + 0 NA Intergenic LTR16E2|LTR|ERVL -77366 NM_015492 56905 Hs.17936 XM_005254551 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 3223 chr8 134060933 134063547 + 0 NA intron (NM_001045557, intron 3 of 7) intron (NM_001045557, intron 3 of 7) -3414 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA mir-7848 ncRNA 1113 chr7 155600799 155602624 + 0 NA intron (NM_000193, intron 1 of 2) CpG 3256 NM_000193 6469 Hs.164537 NM_000193 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 3244 chr9 135732383 135734088 + 0 NA intron (NM_152572, intron 4 of 12) intron (NM_152572, intron 4 of 12) 20963 NM_152572 158067 Hs.421340 XM_005272169 ENSG00000165695 AK8 AK 8|C9orf98|DDX31|RP11-143F18.1 adenylate kinase 8 protein-coding 2122 chr22 29899327 29900751 + 0 NA Intergenic Intergenic 23858 NM_021076 4744 Hs.198760 XM_005261619 ENSG00000100285 NEFH NFH neurofilament, heavy polypeptide protein-coding 674 chr2 42367813 42370058 + 0 NA Intergenic Intergenic -27555 NM_001145076 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 2280 chr5 77510693 77513481 + 0 NA intron (NM_001271769, intron 6 of 26) intron (NM_001271769, intron 6 of 26) 78492 NM_003664 8546 Hs.532091 XM_005248618 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor-related protein complex 3, beta 1 subunit protein-coding 1317 chr9 118135040 118136549 + 0 NA intron (NM_017418, intron 4 of 7) intron (NM_017418, intron 4 of 7) 231697 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 280 chr12 76083989 76084637 + 0 NA Intergenic Intergenic -178895 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 957 chr5 39100375 39103083 + 0 NA Intergenic Charlie8|DNA|hAT-Charlie -27219 NM_152756 253260 Hs.407926 XM_005248277 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR, complex 2 protein-coding 273 chr12 63105428 63107546 + 0 NA intron (NM_020700, intron 6 of 9) intron (NM_020700, intron 6 of 9) 109021 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 2430 chr7 139613445 139617236 + 0 NA intron (NM_030984, intron 4 of 11) intron (NM_030984, intron 4 of 11) 86388 NR_029394 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 (platelet) protein-coding 471 chr16 29210754 29212085 + 0 NA Intergenic L1ME2z|LINE|L1 -102189 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RP11-231C14.7|RUNDC2C sorting nexin 29 pseudogene 2 pseudo 2943 chr2 208555214 208557055 + 0 NA Intergenic AluSq2|SINE|Alu -20130 NM_001142300 151195 Hs.597952 XM_005246343 ENSG00000163249 CCNYL1 - cyclin Y-like 1 protein-coding 2596 chr8 142273488 142277481 + 0 NA Intergenic Intergenic -10756 NM_001286646 57210 Hs.372492 XM_005251001 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 1503 chr10 128144532 128152506 + 0 NA intron (NM_001004298, intron 5 of 8) MIRb|SINE|MIR -38071 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 RP11-422P15.3 long intergenic non-protein coding RNA 601 ncRNA 2262 chr4 153987885 153990929 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR -84863 NM_001130067 23321 Hs.435711 XM_005262872 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 1509 chr10 135070268 135073939 + 0 NA Intergenic Intergenic -10714 NR_108078 101927671 Hs.741766 XR_242767 ENSG00000166917 MIR202HG - MIR202 host gene (non-protein coding) ncRNA 1936 chr19 9878624 9880125 + 0 NA promoter-TSS (NM_001077624) promoter-TSS (NM_001077624) 36 NM_001077624 162993 Hs.665717 XM_005259771 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 2912 chr2 40697836 40700452 + 0 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 40431 NM_001112802 6546 Hs.744988 XM_005264512 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 1325 chr9 132108939 132110979 + 0 NA Intergenic Intergenic 26664 NM_001012715 414318 Hs.449434 NM_001012715 C9orf106 bA65J3.5 chromosome 9 open reading frame 106 protein-coding 2512 chr8 25201309 25204010 + 0 NA promoter-TSS (NR_106936) promoter-TSS (NR_106936) -259 NR_106936 102465527 NR_106936 MIR6876 hsa-mir-6876 microRNA mir-6876 ncRNA 1643 chr12 53348669 53351630 + 0 NA Intergenic L1MC4a|LINE|L1 -6499 NM_001256293 3856 Hs.708445 NM_001256282 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 131 chr10 62758128 62762021 + 0 NA intron (NR_024555, intron 1 of 11) intron (NR_024555, intron 1 of 11) 662 NR_024554 9886 Hs.737374 NM_001242359 ENSG00000072422 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 1565 chr11 46401087 46403586 + 0 NA promoter-TSS (NR_073039) promoter-TSS (NR_073039) 2 NM_001270550 4192 Hs.82045 NM_001012333 ENSG00000110492 MDK ARAP|MK|NEGF2 midkine (neurite growth-promoting factor 2) protein-coding 502 chr17 1899582 1902260 + 0 NA intron (NM_178568, intron 1 of 1) intron (NM_178568, intron 1 of 1) 27257 NM_178568 146760 Hs.22917 NM_178568 ENSG00000185924 RTN4RL1 NGRH2|NgR3 reticulon 4 receptor-like 1 protein-coding 1286 chr8 143756009 143758616 + 0 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -4562 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 314 chr12 119883954 119885299 + 0 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 112109 NM_178499 160777 Hs.98188 XM_005253854 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 1796 chr16 19430016 19432384 + 0 NA intron (NM_001261841, intron 1 of 21) intron (NM_001261841, intron 1 of 21) 2182 NM_001261841 79838 Hs.115838 XM_005255583 ENSG00000103534 TMC5 - transmembrane channel-like 5 protein-coding 2998 chr3 81041205 81044851 + 0 NA Intergenic Intergenic 767922 NM_000158 2632 Hs.436062 XM_005264728 ENSG00000114480 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 1502 chr10 128127230 128129888 + 0 NA intron (NM_001004298, intron 6 of 8) L1PB1|LINE|L1 -18111 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 RP11-422P15.3 long intergenic non-protein coding RNA 601 ncRNA 2638 chr9 123787693 123789928 + 0 NA intron (NM_001735, intron 8 of 40) MER20|DNA|hAT-Charlie 23744 NM_001735 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5a|C5b|CPAMD4 complement component 5 protein-coding 1872 chr17 1672079 1674634 + 0 NA intron (NM_002615, intron 3 of 7) intron (NM_002615, intron 3 of 7) 8097 NM_002615 5176 Hs.532768 NM_002615 ENSG00000132386 SERPINF1 EPC-1|OI12|OI6|PEDF serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 protein-coding 355 chr14 61643798 61646747 + 0 NA Intergenic Intergenic 103258 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 553 chr17 53527501 53530968 + 0 NA Intergenic AluJr|SINE|Alu -29893 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 2058 chr2 235097597 235101137 + 0 NA Intergenic L1M5|LINE|L1 140021 NM_006944 6694 Hs.444488 XM_005246102 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 1252 chr8 124406368 124409635 + 0 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 704 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family, AAA domain containing 2 protein-coding 2877 chr17 67399321 67402112 + 0 NA Intergenic Intergenic -10122 NM_002758 5608 Hs.463978 XM_005257515 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 2643 chr9 132523276 132526374 + 0 NA Intergenic AluSz|SINE|Alu -9481 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 555 chr17 57855452 57858805 + 0 NA intron (NM_030938, intron 7 of 11) intron (NM_030938, intron 7 of 11) -61499 NR_029493 406991 Hs.444569 NR_029493 ENSG00000199004 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 1037 chr6 41996008 41997031 + 0 NA intron (NM_001136017, intron 1 of 4) MIRb|SINE|MIR 20113 NM_001136126 896 Hs.534307 XM_005249463 ENSG00000112576 CCND3 - cyclin D3 protein-coding 2935 chr2 165366846 165369246 + 0 NA intron (NM_004490, intron 6 of 13) L1M1|LINE|L1 110314 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 2513 chr8 27631929 27633512 + 0 NA intron (NM_001017420, intron 1 of 10) intron (NM_001017420, intron 1 of 10) 662 NM_001017420 157570 Hs.99480 XM_005273419 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|RBS establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 37 chr1 33564269 33565146 + 0 NA intron (NM_052998, intron 10 of 11) intron (NM_052998, intron 10 of 11) 17993 NM_052998 113451 Hs.101807 XM_005270404 ENSG00000142920 ADC AZI2|ODC-p|ODC1L arginine decarboxylase protein-coding 855 chr3 24404286 24405293 + 0 NA intron (NM_001128176, intron 1 of 10) intron (NM_001128176, intron 1 of 10) -130789 NR_046244 644990 Hs.631912 XR_245154 THRB-AS1 - THRB antisense RNA 1 ncRNA 195 chr11 61581931 61585882 + 0 NA promoter-TSS (NM_001281502) promoter-TSS (NM_001281502) 30 NM_001281502 9415 Hs.502745 NM_001281501 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 2005 chr2 27007761 27011572 + 0 NA intron (NM_001042426, intron 1 of 3) intron (NM_001042426, intron 1 of 3) 783 NM_001042426 1058 Hs.1594 XR_244922 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 1706 chr14 34545704 34548733 + 0 NA Intergenic L2|LINE|L2 -126934 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 2828 chr15 36638691 36641701 + 0 NA Intergenic Intergenic -231616 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 1839 chr16 68953731 68958648 + 0 NA intron (NM_024562, intron 12 of 17) AluSg|SINE|Alu 78680 NM_024562 79613 Hs.13526 XR_243424 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog (Drosophila) protein-coding 1788 chr15 102065833 102071962 + 0 NA Intergenic Intergenic -38710 NM_138322 5046 Hs.665989 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 2186 chr3 78960406 78963837 + 0 NA intron (NM_133631, intron 2 of 28) intron (NM_133631, intron 2 of 28) 106488 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 679 chr2 235043699 235046969 + 0 NA Intergenic MER4B|LTR|ERV1 85988 NM_006944 6694 Hs.444488 XM_005246102 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 680 chr2 9940989 9943193 + 0 NA Intergenic Intergenic -41480 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding 831 chr22 43083412 43085773 + 0 NA Intergenic Intergenic 32284 NM_017436 53947 Hs.105956 XM_005261643 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase protein-coding 1147 chr8 17581934 17582789 + 0 NA intron (NM_001001924, intron 3 of 14) L2b|LINE|L2 -2277 NM_001166393 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 1960 chr19 14245457 14247701 + 0 NA intron (NM_018154, intron 1 of 3) intron (NM_018154, intron 1 of 3) 861 NM_018154 55723 Hs.26516 NM_018154 ENSG00000105011 ASF1B CIA-II anti-silencing function 1B histone chaperone protein-coding 2355 chr6 41995292 41997631 + 0 NA intron (NM_001136017, intron 1 of 4) MIRb|SINE|MIR 20171 NM_001136126 896 Hs.534307 XM_005249463 ENSG00000112576 CCND3 - cyclin D3 protein-coding 1241 chr8 101679256 101680869 + 0 NA Intergenic Intergenic -18169 NM_152628 169166 Hs.567758 XM_005250811 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 2783 chr12 31834138 31836351 + 0 NA intron (NR_103522, intron 7 of 8) LTR55|LTR|ERV 22635 NM_001135863 254013 Hs.740628 XM_005253345 ENSG00000139160 METTL20 C12orf72 methyltransferase like 20 protein-coding 1441 chr1 236561235 236565275 + 0 NA intron (NM_080738, intron 1 of 5) intron (NM_080738, intron 1 of 5) 4539 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR-associated death domain protein-coding 647 chr19 38746185 38748012 + 0 NA 5' UTR (NM_033256, exon 1 of 4) 5' UTR (NM_033256, exon 1 of 4) 133 NM_033256 94274 Hs.631569 NM_001243947 ENSG00000167641 PPP1R14A CPI-17|CPI17|PPP1INL protein phosphatase 1, regulatory (inhibitor) subunit 14A protein-coding 1206 chr8 41591307 41594244 + 0 NA intron (NM_001142446, intron 2 of 42) intron (NM_001142446, intron 2 of 42) 62365 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 334 chr14 28851361 28852369 + 0 NA Intergenic Intergenic -384413 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 2292 chr5 23418532 23422759 + 0 NA Intergenic LTR2B|LTR|ERV1 -87079 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 MEISETZ|MSBP3|PFM6|PRMD9|ZNF899 PR domain containing 9 protein-coding 1997 chr2 191788638 191795722 + 0 NA exon (NM_014905, exon 12 of 18) exon (NM_014905, exon 12 of 18) 46633 NM_014905 2744 Hs.737608 XM_005246467 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 1027 chr6 27796450 27799939 + 0 NA TTS (NM_003541) TTS (NM_003541) 1111 NM_003541 8362 Hs.528055 NM_003541 ENSG00000197914 HIST1H4K H4/d|H4F2iii|H4FD|dJ160A22.1 histone cluster 1, H4k protein-coding 1680 chr13 83471404 83474793 + 0 NA Intergenic Intergenic 983430 NM_001281503 114798 Hs.694617 NM_001281503 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK-like family, member 1 protein-coding 423 chr15 102028616 102030677 + 0 NA exon (NM_002570, exon 1 of 22) exon (NM_002570, exon 1 of 22) 541 NM_138323 5046 Hs.665989 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 2879 chr17 74117179 74118747 + 0 NA Intergenic CpG -18095 NM_015219 23265 Hs.514496 NM_001013839 ENSG00000182473 EXOC7 2-5-3p|EX070|EXO70|EXOC1|Exo70p|YJL085W exocyst complex component 7 protein-coding 1953 chr19 2548945 2551512 + 0 NA intron (NM_052847, intron 3 of 4) AluSx1|SINE|Alu 74105 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 1139 chr8 8162502 8165242 + 0 NA Intergenic Intergenic 75385 NM_001080826 157285 Hs.657673 XM_005272369 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 2757 chr11 57194064 57195827 + 0 NA promoter-TSS (NM_199329) promoter-TSS (NM_199329) 108 NM_017611 29015 Hs.99962 XM_005273942 ENSG00000134802 SLC43A3 EEG1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43, member 3 protein-coding 1319 chr9 127070169 127073950 + 0 NA intron (NM_001166171, intron 3 of 10) intron (NM_001166171, intron 3 of 10) 17360 NM_001166169 10783 Hs.197071 XM_005251663 ENSG00000119408 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 1826 chr16 19141304 19143405 + 0 NA Intergenic Intergenic 17100 NR_028028 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 2454 chr8 32092269 32101593 + 0 NA intron (NM_013962, intron 1 of 4) L1MD2|LINE|L1 -201331 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 2077 chr20 13009328 13012062 + 0 NA intron (NM_018327, intron 1 of 11) intron (NM_018327, intron 1 of 11) 21068 NM_018327 55304 Hs.425023 XR_244218 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase, long chain base subunit 3 protein-coding 1222 chr8 65710758 65711706 + 0 NA 5' UTR (NM_004820, exon 1 of 6) 5' UTR (NM_004820, exon 1 of 6) 116 NM_004820 9420 Hs.667720 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450, family 7, subfamily B, polypeptide 1 protein-coding 2036 chr2 165416793 165428479 + 0 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) 55724 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 1747 chr15 41451051 41455139 + 0 NA Intergenic Intergenic -44651 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 174 chr11 27421986 27425091 + 0 NA intron (NM_018490, intron 2 of 17) intron (NM_018490, intron 2 of 17) -38743 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 820 chr22 30622283 30626889 + 0 NA Intergenic AluJb|SINE|Alu 18254 NM_001257135 3976 Hs.2250 XM_005261601 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 1799 chr16 29209984 29215081 + 0 NA Intergenic AluSx1|SINE|Alu -101076 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RP11-231C14.7|RUNDC2C sorting nexin 29 pseudogene 2 pseudo 1571 chr11 59322676 59326304 + 0 NA Intergenic Intergenic 38141 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 422 chr15 101978755 101980808 + 0 NA intron (NM_138324, intron 2 of 14) intron (NM_138324, intron 2 of 14) 50406 NM_138323 5046 Hs.665989 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 905 chr4 331406 332385 + 0 NA intron (NM_003441, intron 1 of 3) CpG-19335 299 NM_003441 7700 Hs.654355 XM_005272294 ZNF141 D4S90|PAPA6|pHZ-44 zinc finger protein 141 protein-coding 1552 chr11 13146674 13149434 + 0 NA Intergenic Intergenic 117084 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 1194 chr8 32097624 32099242 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -199829 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 41 chr1 46713244 46714577 + 0 NA 5' UTR (NM_003579, exon 1 of 18) 5' UTR (NM_003579, exon 1 of 18) 543 NM_003579 8438 Hs.642042 XM_005271272 ENSG00000085999 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54-like (S. cerevisiae) protein-coding 3014 chr3 195596353 195598563 + 0 NA intron (NM_001010938, intron 10 of 14) intron (NM_001010938, intron 10 of 14) 11808 NR_106887 102465977 NR_106887 MIR6829 hsa-mir-6829 microRNA mir-6829 ncRNA 52 chr1 98499484 98500213 + 0 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 11059 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 3084 chr6 45404057 45408161 + 0 NA intron (NM_001278478, intron 3 of 5) intron (NM_001278478, intron 3 of 5) 15795 NM_001278478 860 Hs.535845 NM_001015051 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 2887 chr18 24090710 24093929 + 0 NA intron (NM_001258222, intron 1 of 4) AluSx|SINE|Alu 36181 NM_001142730 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 1451 chr10 33257413 33264136 + 0 NA Intergenic L3b|LINE|CR1 -13481 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 302 chr12 111846212 111850783 + 0 NA intron (NM_005475, intron 1 of 7) intron (NM_005475, intron 1 of 7) 4745 NM_005475 10019 Hs.506784 XM_005253818 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 1453 chr10 33504057 33508300 + 0 NA intron (NM_001244972, intron 8 of 16) intron (NM_001244972, intron 8 of 16) 117655 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 866 chr3 45240919 45241655 + 0 NA Intergenic Intergenic 26527 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 2452 chr8 25099453 25110824 + 0 NA intron (NM_024940, intron 2 of 51) intron (NM_024940, intron 2 of 51) 62851 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2223 chr4 175357580 175359931 + 0 NA Intergenic Intergenic 13809 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 593 chr18 14189245 14190464 + 0 NA intron (NR_040113, intron 5 of 15) MamGypLTR3|LTR|Gypsy 10758 NR_040113 440482 Hs.632352 NM_001029999 ANKRD20A5P ANKRD20A5 ankyrin repeat domain 20 family, member A5, pseudogene pseudo 770 chr20 44440239 44442826 + 0 NA promoter-TSS (NM_181801) promoter-TSS (NM_181801) -140 NM_181801 11065 Hs.93002 XM_005260261 ENSG00000175063 UBE2C UBCH10|dJ447F3.2 ubiquitin-conjugating enzyme E2C protein-coding 188 chr11 47958342 47961181 + 0 NA Intergenic L2a|LINE|L2 -42349 NM_001098503 5795 Hs.318547 XM_005253038 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 402 chr15 65116782 65118852 + 0 NA promoter-TSS (NM_001286497) promoter-TSS (NM_001286497) 50 NM_025049 80119 Hs.112160 XM_005254691 ENSG00000140451 PIF1 C15orf20|PIF PIF1 5'-to-3' DNA helicase protein-coding 3152 chr8 18924575 18926168 + 0 NA Intergenic Intergenic -54175 NM_015310 23362 Hs.434255 XM_005273460 ENSG00000156011 PSD3 EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 1940 chr19 18524601 18533597 + 0 NA Intergenic CpG -1047 NM_032627 170463 Hs.515259 XM_005259786 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 1097 chr7 95056042 95057940 + 0 NA intron (NM_001018161, intron 1 of 8) MLT1L|LTR|ERVL-MaLR 7393 NM_000305 5445 Hs.744912 XM_005250453 ENSG00000105854 PON2 - paraoxonase 2 protein-coding 641 chr19 18549179 18551103 + 0 NA Intergenic Intergenic -1030 NM_001170938 51477 Hs.405873 NM_001170938 ENSG00000105655 ISYNA1 INO1|INOS|IPS|IPS 1|IPS-1 inositol-3-phosphate synthase 1 protein-coding 1641 chr12 52369202 52373836 + 0 NA intron (NM_020327, intron 3 of 8) AluJb|SINE|Alu 24355 NM_020327 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor, type IB protein-coding 838 chr3 8781335 8782672 + 0 NA intron (NM_001234, intron 1 of 2) MLT1F1|LTR|ERVL-MaLR 6517 NM_001234 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 2962 chr22 21756209 21758121 + 0 NA Intergenic MIRb|SINE|MIR -14528 NM_015094 23119 Hs.632767 XM_005261395 ENSG00000169635 HIC2 HRG22|ZBTB30|ZNF907 hypermethylated in cancer 2 protein-coding 2664 chrX 122957730 122960429 + 0 NA Intergenic MER21B|LTR|ERVL -34583 NM_001204401 331 Hs.736565 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 616 chr19 610510 611615 + 0 NA intron (NM_001194, intron 5 of 7) MLT1C|LTR|ERVL-MaLR 21169 NM_001194 610 Hs.124161 NM_001194 ENSG00000099822 HCN2 BCNG-2|BCNG2|HAC-1 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 protein-coding 640 chr19 18526621 18528889 + 0 NA Intergenic CpG -2391 NM_032627 170463 Hs.515259 XM_005259786 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 1121 chr8 32159551 32162009 + 0 NA intron (NM_013962, intron 1 of 4) BLACKJACK|DNA|hAT-Blackjack -137482 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 870 chr3 48228063 48229970 + 0 NA intron (NM_201567, intron 1 of 13) intron (NM_201567, intron 1 of 13) 785 NM_001789 993 Hs.437705 XM_005265629 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 1384 chr1 1099735 1101859 + 0 NA Intergenic Intergenic -1687 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B microRNA 200b ncRNA 896 chr3 171843545 171845244 + 0 NA intron (NM_001135095, intron 2 of 25) intron (NM_001135095, intron 2 of 25) 86050 NM_001135095 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 1468 chr10 30235519 30239913 + 0 NA Intergenic Intergenic 110772 NM_020848 57608 Hs.533953 XM_005252548 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 3184 chr8 66921011 66923408 + 0 NA Intergenic Intergenic -11582 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 2068 chr20 33208026 33211197 + 0 NA intron (NM_080476, intron 6 of 11) L2b|LINE|L2 55478 NM_080476 128869 Hs.253319 XM_005260279 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis, class U protein-coding 1726 chr14 93705722 93708263 + 0 NA 3' UTR (NM_001289133, exon 9 of 9) 3' UTR (NM_001289133, exon 9 of 9) -33533 NM_032490 84520 Hs.20142 NM_032490 ENSG00000170270 C14orf142 PNAS-127 chromosome 14 open reading frame 142 protein-coding 2903 chr19 9241705 9243282 + 0 NA Intergenic AluSx|SINE|Alu -4867 NM_001001958 390883 Hs.553775 NM_001001958 ENSG00000170920 OR7G3 OST085 olfactory receptor, family 7, subfamily G, member 3 protein-coding 1464 chr10 11914619 11921061 + 0 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 18869 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 RP11-401F24.4 PROSER2 antisense RNA 1 ncRNA 2165 chr3 171665647 171673657 + 0 NA Intergenic L1ME2|LINE|L1 -87766 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 2347 chr6 26272024 26276882 + 0 NA TTS (NM_003525) TTS (NM_003525) 1249 NM_003525 8346 Hs.553506 NM_003525 ENSG00000168242 HIST1H2BI H2B/k|H2BFK histone cluster 1, H2bi protein-coding 1494 chr10 101519311 101522655 + 0 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -21480 NM_000392 1244 Hs.368243 XM_005269536 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP-binding cassette, sub-family C (CFTR/MRP), member 2 protein-coding 777 chr20 46193503 46194752 + 0 NA intron (NM_181659, intron 1 of 22) MIR3|SINE|MIR 63526 NM_001174088 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 2018 chr2 47580125 47583842 + 0 NA Intergenic Intergenic -9770 NR_110208 101927043 Hs.515976 XR_244999 ENSG00000234690 AC073283.4 - uncharacterized LOC101927043 ncRNA 1906 chr17 79366488 79376045 + 0 NA Intergenic CpG -2274 NM_001080519 57597 Hs.514580 NM_001080519 ENSG00000171282 BAHCC1 BAHD2 BAH domain and coiled-coil containing 1 protein-coding 2786 chr12 76140271 76142613 + 0 NA Intergenic L1MD1|LINE|L1 -236024 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 464 chr16 16189799 16192400 + 0 NA intron (NM_004996, intron 19 of 30) AluSx1|SINE|Alu 126229 NM_001171 368 Hs.442182 XM_005255310 ENSG00000091262 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 3235 chr9 84248192 84251345 + 0 NA intron (NM_005077, intron 6 of 19) intron (NM_005077, intron 6 of 19) 53828 NM_005077 7088 Hs.689805 XM_005252151 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 2977 chr3 60898010 60899798 + 0 NA intron (NM_001166243, intron 3 of 9) intron (NM_001166243, intron 3 of 9) 338229 NM_002012 2272 Hs.655995 XM_005264951 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 1672 chr12 125161557 125171264 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -114400 NM_001206654 9612 Hs.137510 XM_005253638 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 2325 chr5 176802167 176807691 + 0 NA Intergenic Intergenic -6503 NM_003052 6569 Hs.936 XM_005265973 ENSG00000131183 SLC34A1 FRTS2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2 solute carrier family 34 (type II sodium/phosphate contransporter), member 1 protein-coding 1685 chr13 101094802 101097144 + 0 NA intron (NM_001127692, intron 19 of 22) MIR3|SINE|MIR 37296 NR_047686 100885777 Hs.662554 XR_243035 PCCA-AS1 RP11-151A6.5 PCCA antisense RNA 1 ncRNA 2011 chr2 38317923 38321924 + 0 NA Intergenic Intergenic -16600 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450, family 1, subfamily B, polypeptide 1 protein-coding 1891 chr17 49473661 49477659 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 137763 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit (SSU) processome component homolog (yeast) protein-coding 6 chr1 149809499 149817961 + 0 NA promoter-TSS (NM_021059).2 promoter-TSS (NM_021059).2 588 NM_003516 8337 Hs.530461 NM_003516 HIST2H2AA3 H2A|H2A.2|H2A/O|H2A/q|H2AFO|H2a-615|HIST2H2AA histone cluster 2, H2aa3 protein-coding 2768 chr11 100606308 100607689 + 0 NA intron (NM_152432, intron 1 of 23) intron (NM_152432, intron 1 of 23) 48591 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 562 chr17 64671543 64673990 + 0 NA intron (NM_002737, intron 5 of 16) intron (NM_002737, intron 5 of 16) -110424 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 1304 chr9 43373876 43375467 + 0 NA Intergenic L1P3|LINE|L1 -229187 NR_027472 642929 Hs.584288 NR_027472 RP11-327I22.6 - general transcription factor II, i pseudogene pseudo 2327 chr5 179750115 179763347 + 0 NA intron (NM_005110, intron 6 of 18) intron (NM_005110, intron 6 of 18) 23584 NM_005110 9945 Hs.696497 XM_005266017 ENSG00000131459 GFPT2 GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 2269 chr4 189027705 189032247 + 0 NA Intergenic Intergenic -3568 NM_173553 205860 Hs.276429 XM_005262819 ENSG00000179046 TRIML2 SPRYD6 tripartite motif family-like 2 protein-coding 1102 chr7 95121026 95122267 + 0 NA intron (NM_145872, intron 1 of 2) intron (NM_145872, intron 1 of 2) 6433 NM_145872 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 183 chr11 35103424 35105349 + 0 NA Intergenic Intergenic -56031 NM_001202557 960 Hs.502328 XM_005253231 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 3189 chr8 79109252 79111640 + 0 NA Intergenic Intergenic -317890 NM_181839 5569 Hs.732129 NM_006823 ENSG00000171033 PKIA PRKACN1 protein kinase (cAMP-dependent, catalytic) inhibitor alpha protein-coding 3179 chr8 62721991 62723333 + 0 NA Intergenic Intergenic 95315 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 2544 chr8 66884821 66888280 + 0 NA Intergenic MLT1A1|LTR|ERVL-MaLR -47241 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 1478 chr10 34704829 34710268 + 0 NA intron (NM_001184790, intron 4 of 22) intron (NM_001184790, intron 4 of 22) 396705 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2541 chr8 56755794 56759360 + 0 NA Intergenic Intergenic -34809 NM_001111097 4067 Hs.545418 XM_005251232 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn v-yes-1 Yamaguchi sarcoma viral related oncogene homolog protein-coding 439 chr16 70466590 70468052 + 0 NA intron (NM_006927, intron 1 of 6) intron (NM_006927, intron 1 of 6) 5670 NM_006927 6483 Hs.368611 XM_005256114 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 362 chr14 97263514 97265250 + 0 NA intron (NM_003384, intron 1 of 12) L2a|LINE|L2 698 NM_003384 7443 Hs.422662 XM_005268040 ENSG00000100749 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 1379 chr1 181042312 181048789 + 0 NA Intergenic Intergenic -12088 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 2607 chr9 132093770 132116326 + 0 NA Intergenic Intergenic 21753 NM_001012715 414318 Hs.449434 NM_001012715 C9orf106 bA65J3.5 chromosome 9 open reading frame 106 protein-coding 1593 chr11 70004381 70007473 + 0 NA intron (NM_018043, intron 16 of 25) intron (NM_018043, intron 16 of 25) -43342 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD MORT1 Fas (TNFRSF6)-associated via death domain protein-coding 705 chr2 69794111 69794762 + 0 NA intron (NM_014911, intron 2 of 21) L2b|LINE|L2 -47133 NR_003705 100124535 Hs.693447 NR_003705 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 1720 chr14 58921465 58923467 + 0 NA intron (NM_014749, intron 9 of 29) L1M4|LINE|L1 16067 NM_001244193 9786 Hs.232532 XM_005268242 ENSG00000100578 KIAA0586 Talpid3 KIAA0586 protein-coding 3053 chr5 23411214 23413425 + 0 NA Intergenic Intergenic -95405 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 MEISETZ|MSBP3|PFM6|PRMD9|ZNF899 PR domain containing 9 protein-coding 2206 chr3 171707812 171710534 + 0 NA Intergenic MER82|DNA|TcMar-Tigger -48245 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 2496 chr8 17433573 17436231 + 0 NA intron (NM_006207, intron 2 of 6) CpG 960 NM_006207 5157 Hs.458573 XM_005273528 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet-derived growth factor receptor-like protein-coding 2177 chr3 45240067 45243412 + 0 NA Intergenic Intergenic 26075 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 407 chr15 71428716 71429450 + 0 NA Intergenic Intergenic -4705 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 18 chr1 1617035 1618731 + 0 NA intron (NM_001110781, intron 1 of 8) L1MC4|LINE|L1 6360 NM_001110781 728661 Hs.655255 XM_005244791 ENSG00000189339 SLC35E2B SLC35E2 solute carrier family 35, member E2B protein-coding 376 chr15 81247418 81248608 + 0 NA Intergenic AluSx|SINE|Alu 34192 NM_015154 23184 Hs.732380 XR_243082 ENSG00000117899 MESDC2 BOCA|MESD mesoderm development candidate 2 protein-coding 912 chr4 72473053 72475197 + 0 NA Intergenic L2c|LINE|L2 175954 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP/GC|GRD3|VDBG|VDBP group-specific component (vitamin D binding protein) protein-coding 1432 chr1 199762447 199764591 + 0 NA Intergenic Charlie1|DNA|hAT-Charlie -233211 NM_003822 2494 Hs.33446 XM_005245061 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 785 chr20 54455390 54456924 + 0 NA Intergenic Intergenic 124371 NM_080617 140689 Hs.741877 XM_005260291 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 1930 chr18 67984822 67993234 + 0 NA intron (NM_004232, intron 1 of 1) MIRb|SINE|MIR 32891 NM_004232 9306 Hs.44439 XM_005266783 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 599 chr18 37379010 37380766 + 0 NA Intergenic MER61-int|LTR|ERV1 -47929 NR_024391 647946 Hs.649350 NR_024391 ENSG00000267374 LINC00669 RP11-244M2.1 long intergenic non-protein coding RNA 669 ncRNA 1393 chr1 9447865 9449681 + 0 NA Intergenic Intergenic 40202 NR_104623 100506022 Hs.568596 XR_109872 LOC100506022 - uncharacterized LOC100506022 ncRNA 1167 chr8 23075128 23077979 + 0 NA intron (NM_003844, intron 1 of 9) intron (NM_003844, intron 1 of 9) 6127 NM_003844 8797 Hs.591834 NM_003844 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 tumor necrosis factor receptor superfamily, member 10a protein-coding 587 chr18 3615135 3616234 + 0 NA intron (NM_001003809, intron 4 of 9) intron (NM_001003809, intron 4 of 9) 21572 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914|RP11-874J12.2 DLGAP1 antisense RNA 1 ncRNA 609 chr19 46070856 46074227 + 0 NA intron (NM_025136, intron 1 of 1) AluSx1|SINE|Alu 15581 NM_001017989 80207 Hs.723713 XM_005259278 ENSG00000125741 OPA3 MGA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) protein-coding 1235 chr8 90906623 90907147 + 0 NA Intergenic L1MA3|LINE|L1 -7211 NM_004337 734 Hs.436445 NM_001126111 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 298 chr12 105055654 105056962 + 0 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 70897 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 95 chr10 11916422 11920020 + 0 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 18488 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 RP11-401F24.4 PROSER2 antisense RNA 1 ncRNA 923 chr4 95891145 95892025 + 0 NA intron (NM_001203, intron 2 of 12) AluSq2|SINE|Alu -25798 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 243 chr12 110492490 110494368 + 0 NA intron (NM_207435, intron 4 of 4) LTR8|LTR|ERV1 12071 NM_207435 400073 Hs.44817 XM_005253882 ENSG00000174456 C12orf76 - chromosome 12 open reading frame 76 protein-coding 2051 chr2 219773198 219774939 + 0 NA intron (NR_110238, intron 3 of 4) CpG 21291 NR_110238 101928537 Hs.611129 XR_241418 ENSG00000228135 AC073128.10 - uncharacterized LOC101928537 ncRNA 2682 chr1 53572275 53574712 + 0 NA TTS (NM_001287596) TTS (NM_001287596) 34811 NM_001287596 6512 Hs.104637 XM_005271133 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 (glutamate transporter), member 7 protein-coding 148 chr11 12188223 12189788 + 0 NA intron (NM_001282663, intron 3 of 27) intron (NM_001282663, intron 3 of 27) 3775 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA mir-6124 ncRNA 753 chr20 52753229 52759086 + 0 NA Intergenic Intergenic 34359 NM_000782 1591 Hs.89663 XM_005260304 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|P450-CC24 cytochrome P450, family 24, subfamily A, polypeptide 1 protein-coding 1343 chrX 71457967 71459759 + 0 NA promoter-TSS (NM_017669) promoter-TSS (NM_017669) -5 NM_017669 54821 Hs.47558 XM_005262280 ENSG00000186871 ERCC6L PICH|RAD26L excision repair cross-complementing rodent repair deficiency, complementation group 6-like protein-coding 2489 chr8 6757189 6762497 + 0 NA Intergenic AluSz|SINE|Alu 23755 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin, alpha 6, Paneth cell-specific protein-coding 2655 chrX 19139118 19141381 + 0 NA intron (NM_001079860, intron 1 of 26) CpG 506 NM_001184833 10149 Hs.146978 NM_001079858 ENSG00000173698 GPR64 EDDM6|HE6|TM7LN2 G protein-coupled receptor 64 protein-coding 2404 chr7 37001164 37003720 + 0 NA intron (NM_014800, intron 16 of 21) intron (NM_014800, intron 16 of 21) 22275 NM_001039459 9844 Hs.656638 XM_005249919 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 726 chr2 165378581 165379179 + 0 NA intron (NM_004490, intron 5 of 13) intron (NM_004490, intron 5 of 13) 99480 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 2509 chr8 23074575 23079583 + 0 NA intron (NM_003844, intron 1 of 9) L1MEc|LINE|L1 5601 NM_003844 8797 Hs.591834 NM_003844 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 tumor necrosis factor receptor superfamily, member 10a protein-coding 2955 chr20 22554376 22557458 + 0 NA intron (NR_001558, intron 1 of 3) intron (NR_001558, intron 1 of 3) 3363 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 C20orf56|HCCDR1|NCRNA00261|bA216C10.1|dJ788L20.2 long intergenic non-protein coding RNA 261 ncRNA 2703 chr1 193669312 193671605 + 0 NA Intergenic Intergenic -514715 NM_003783 8707 Hs.518834 NM_003783 ENSG00000162630 B3GALT2 BETA3GALT2|GLCT2|beta3Gal-T2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 2171 chr3 24403507 24408476 + 0 NA intron (NM_001128176, intron 1 of 10) MIRb|SINE|MIR -129587 NR_046244 644990 Hs.631912 XR_245154 THRB-AS1 - THRB antisense RNA 1 ncRNA 2611 chr9 4903601 4906210 + 0 NA Intergenic MADE1|DNA|TcMar-Mariner 54608 NR_029836 406894 NR_029836 MIR101-2 MIRN101-2 microRNA 101-2 ncRNA 106 chr10 33404114 33404943 + 0 NA Intergenic AluSg|SINE|Alu -157235 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 157 chr11 59473592 59475463 + 0 NA Intergenic LTR3|LTR|ERVK 6791 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor, family 10, subfamily V, member 1 protein-coding 964 chr5 55645461 55647951 + 0 NA Intergenic Intergenic -117520 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 2009 chr2 28577451 28586986 + 0 NA Intergenic Intergenic -33561 NM_005253 2355 Hs.596972 XM_005264231 FOSL2 FRA2 FOS-like antigen 2 protein-coding 65 chr1 145962908 145964530 + 0 NA intron (NR_104217, intron 2 of 17).2 intron (NR_104217, intron 2 of 17).2 -21100 NR_003377 728939 Hs.696575 NR_003377 ENSG00000215860 PDZK1P1 - PDZ domain containing 1 pseudogene 1 pseudo 1909 chr18 14188166 14191171 + 0 NA intron (NR_040113, intron 5 of 15) FLAM_C|SINE|Alu 10572 NR_040113 440482 Hs.632352 NM_001029999 ANKRD20A5P ANKRD20A5 ankyrin repeat domain 20 family, member A5, pseudogene pseudo 935 chr4 154265115 154267209 + 0 NA intron (NR_045605, intron 1 of 9) CpG 361 NM_001253861 84057 Hs.294088 XM_005263274 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 homolog (S. cerevisiae) protein-coding 203 chr11 63774612 63775828 + 0 NA intron (NM_014067, intron 4 of 10) intron (NM_014067, intron 4 of 10) 21895 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU domain, ubiquitin aldehyde binding 1 protein-coding 2627 chr9 93821778 93824888 + 0 NA Intergenic Intergenic 14081 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 1213 chr8 52308226 52309163 + 0 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 413311 NM_144651 137902 Hs.444882 XM_005251167 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 1093 chr7 76583925 76586870 + 0 NA Intergenic AluJo|SINE|Alu -24742 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 81 chr1 242388185 242390263 + 0 NA intron (NM_152666, intron 5 of 10) L1ME1|LINE|L1 223560 NM_001195811 200150 Hs.672452 XM_005273084 ENSG00000180287 PLD5 PLDC phospholipase D family, member 5 protein-coding 1023 chr6 27094316 27096539 + 0 NA Intergenic L1MC5|LINE|L1 5148 NM_021058 8970 Hs.656567 XM_005249464 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 2742 chr11 28015632 28017864 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -61614 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 2473 chr8 126235903 126239648 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) 133692 NM_173685 286053 Hs.388297 XM_005250875 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 non-SMC element 2, MMS21 homolog (S. cerevisiae) protein-coding 2084 chr20 47338534 47341306 + 0 NA intron (NM_020820, intron 5 of 39) intron (NM_020820, intron 5 of 39) 104500 NM_020820 57580 Hs.153310 XM_005260471 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 1300 chr9 33429381 33432169 + 0 NA Intergenic Intergenic 16856 NM_004925 360 Hs.234642 XM_005251452 ENSG00000165272 AQP3 AQP-3|GIL aquaporin 3 (Gill blood group) protein-coding 1199 chr8 32181503 32182283 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -116369 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 86 chr10 13811667 13812374 + 0 NA intron (NM_018027, intron 6 of 24) MLT2B1|LTR|ERVL 183081 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 624 chr19 3141777 3142899 + 0 NA intron (NM_002068, intron 1 of 6) intron (NM_002068, intron 1 of 6) 6147 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) protein-coding 2598 chr8 143780428 143782210 + 0 NA promoter-TSS (NM_001160355) promoter-TSS (NM_001160355) -210 NM_001160354 54742 Hs.716823 XM_005250989 LY6K CT97|HSJ001348|ly-6K lymphocyte antigen 6 complex, locus K protein-coding 1158 chr8 19400781 19401449 + 0 NA intron (NR_024040, intron 2 of 9) MER68B|LTR|ERVL 58941 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 2170 chr3 23708883 23712001 + 0 NA Intergenic Arthur1|DNA|hAT-Tip100 -136942 NM_182666 7324 Hs.164853 XM_005265431 ENSG00000170142 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 371 chr14 103601203 103604713 + 0 NA 3' UTR (NM_006291, exon 11 of 11) 3' UTR (NM_006291, exon 11 of 11) 10294 NM_006291 7127 Hs.736562 XM_005268034 ENSG00000185215 TNFAIP2 B94|EXOC3L3 tumor necrosis factor, alpha-induced protein 2 protein-coding 656 chr19 46312228 46313448 + 0 NA intron (NM_030785, intron 2 of 5) AluY|SINE|Alu 5767 NM_030785 81492 Hs.146544 NM_030785 ENSG00000104941 RSPH6A RSHL1|RSP4|RSP6|RSPH4B radial spoke head 6 homolog A (Chlamydomonas) protein-coding 204 chr11 63851574 63854436 + 0 NA intron (NM_014067, intron 3 of 10) CpG -18357 NM_013280 23769 Hs.584876 XM_005273861 ENSG00000126500 FLRT1 RP11-21A7A.2 fibronectin leucine rich transmembrane protein 1 protein-coding 2335 chr6 21002852 21007149 + 0 NA intron (NM_017774, intron 11 of 15) AluJo|SINE|Alu 470312 NM_017774 54901 Hs.657604 XM_005249201 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 1041 chr6 73785359 73785967 + 0 NA intron (NM_001160133, intron 3 of 14) AluJo|SINE|Alu 67574 NR_046621 100873997 Hs.743196 NR_046621 ENSG00000229154 KCNQ5-AS1 RP11-257K9.2 KCNQ5 antisense RNA 1 ncRNA 2921 chr2 241860256 241862627 + 0 NA Intergenic Intergenic -25868 NM_001085437 79919 Hs.193745 XM_005247044 ENSG00000172478 C2orf54 - chromosome 2 open reading frame 54 protein-coding 1990 chr2 70172461 70175412 + 0 NA Intergenic Intergenic 15461 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 435 chr16 68992570 68993227 + 0 NA intron (NM_024562, intron 14 of 17) intron (NM_024562, intron 14 of 17) 115389 NM_024562 79613 Hs.13526 XR_243424 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog (Drosophila) protein-coding 3254 chrX 96643930 96645920 + 0 NA intron (NM_007309, intron 25 of 26) LTR26|LTR|ERV1 506018 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4, 30kDa protein-coding 814 chr22 24602245 24605249 + 0 NA Intergenic AluJb|SINE|Alu 26303 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 3195 chr8 90837950 90839551 + 0 NA Intergenic Intergenic 68775 NM_003821 8767 Hs.103755 XM_005251092 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor-interacting serine-threonine kinase 2 protein-coding 2492 chr8 8462129 8465095 + 0 NA Intergenic MIRc|SINE|MIR -96054 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 1482 chr10 34825502 34829820 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 276592 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2109 chr22 24591093 24607557 + 0 NA Intergenic AluSx1|SINE|Alu 21881 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 885 chr3 148939190 148940360 + 0 NA promoter-TSS (NM_000096) promoter-TSS (NM_000096) 57 NM_000096 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 1412 chr1 55971594 55974292 + 0 NA Intergenic Intergenic 281629 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 - microRNA 4422 ncRNA 884 chr3 148933151 148935171 + 0 NA intron (NR_046371, intron 1 of 17) MLT1E3|LTR|ERVL-MaLR 5671 NM_000096 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 1709 chr14 35117292 35122454 + 0 NA Intergenic LTR7B|LTR|ERV1 -20507 NM_152233 58533 Hs.356647 XM_005267957 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 339 chr14 29049879 29050531 + 0 NA Intergenic L1PA16|LINE|L1 -186073 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 228 chr11 70227891 70228969 + 0 NA intron (NR_045286, intron 28 of 28) intron (NR_045286, intron 28 of 28) -16182 NM_001184740 2017 Hs.596164 XM_005273816 ENSG00000085733 CTTN EMS1 cortactin protein-coding 749 chr2 238036227 238037805 + 0 NA Intergenic Intergenic 42932 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 268 chr12 53813854 53816091 + 0 NA Intergenic AluSx|SINE|Alu -2667 NM_020547 269 Hs.659889 XM_005268786 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor, type II protein-coding 829 chr22 42709181 42710790 + 0 NA Intergenic L2a|LINE|L2 44226 NR_036498 388906 Hs.730075 NR_036498 ENSG00000182057 LOC388906 - opioid growth factor receptor pseudogene pseudo 2872 chr17 53483223 53486832 + 0 NA intron (NM_012329, intron 4 of 6) intron (NM_012329, intron 4 of 6) 14314 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 345 chr14 35119638 35120698 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -20802 NM_152233 58533 Hs.356647 XM_005267957 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 596 chr18 24057078 24059583 + 0 NA intron (NM_001258221, intron 2 of 4) intron (NM_001258221, intron 2 of 4) 70170 NM_001142730 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 1297 chr9 127154148 127156573 + 0 NA intron (NM_002799, intron 5 of 7) intron (NM_002799, intron 5 of 7) 22392 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 2090 chr20 52506430 52510414 + 0 NA Intergenic Intergenic -16174 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1521 chr11 28062699 28067457 + 0 NA intron (NM_031217, intron 13 of 16) intron (NM_031217, intron 13 of 16) -13284 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 1862 chr17 53492035 53501545 + 0 NA intron (NM_012329, intron 1 of 6) intron (NM_012329, intron 1 of 6) 2551 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 2352 chr6 27837353 27843755 + 0 NA promoter-TSS (NM_003533) promoter-TSS (NM_003533) -455 NM_003533 8354 Hs.586261 NM_003533 ENSG00000182572 HIST1H3I H3.f|H3/f|H3FF histone cluster 1, H3i protein-coding 613 chr19 49003980 49005325 + 0 NA exon (NM_001080434, exon 10 of 16) exon (NM_001080434, exon 10 of 16) 11794 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|TYKLM3 lemur tyrosine kinase 3 protein-coding 1082 chr7 47797396 47798492 + 0 NA Intergenic Intergenic -3130 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 AC019066.3 long intergenic non-protein coding RNA 525 ncRNA 1066 chr7 11765917 11767319 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 105206 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 121 chr10 34826224 34829393 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 276445 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 952 chr5 23324410 23325858 + 0 NA Intergenic MLT1E2|LTR|ERVL-MaLR -182590 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 MEISETZ|MSBP3|PFM6|PRMD9|ZNF899 PR domain containing 9 protein-coding 2691 chr1 101080625 101082288 + 0 NA Intergenic Intergenic 31104 NR_038914 100128787 Hs.536050 NR_038914 RP11-84O12.4 - uncharacterized LOC100128787 ncRNA 1071 chr7 11859678 11861013 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 11479 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 494 chr16 70740114 70741888 + 0 NA intron (NM_018052, intron 14 of 18) intron (NM_018052, intron 14 of 18) -21047 NM_138383 92154 Hs.432387 XM_005256236 ENSG00000132613 MTSS1L ABBA-1 metastasis suppressor 1-like protein-coding 487 chr16 69098531 69099416 + 0 NA intron (NM_024562, intron 17 of 17) intron (NM_024562, intron 17 of 17) -40494 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 3058 chr5 28312981 28315535 + 0 NA Intergenic Intergenic -612719 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 1956 chr19 5879538 5881840 + 0 NA Intergenic Intergenic -10138 NM_002034 2527 Hs.631843 NM_002034 ENSG00000130383 FUT5 FUC-TV fucosyltransferase 5 (alpha (1,3) fucosyltransferase) protein-coding 2778 chr12 116979281 116982410 + 0 NA Intergenic Intergenic 9605 NR_027346 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 2235 chr4 41910451 41912411 + 0 NA Intergenic L1PA7|LINE|L1 -25706 NM_018126 55161 Hs.31082 XM_005248116 ENSG00000109133 TMEM33 1600019D15Rik|SHINC3 transmembrane protein 33 protein-coding 238 chr11 118966391 118967049 + 0 NA promoter-TSS (NM_002105) promoter-TSS (NM_002105) -543 NM_002105 3014 Hs.477879 XR_246424 ENSG00000188486 H2AFX H2A.X|H2A/X|H2AX H2A histone family, member X protein-coding 3175 chr8 52300453 52303036 + 0 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 420261 NM_144651 137902 Hs.444882 XM_005251167 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 873 chr3 78961266 78963821 + 0 NA intron (NM_133631, intron 2 of 28) intron (NM_133631, intron 2 of 28) 106066 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 3081 chr6 11054384 11057028 + 0 NA intron (NR_038964, intron 3 of 4) intron (NR_038964, intron 3 of 4) 10782 NR_038962 100506409 Hs.43818 NR_038962 ELOVL2-AS1 RP1-62D2.3 ELOVL2 antisense RNA 1 ncRNA 253 chr12 117583855 117591227 + 0 NA intron (NM_033624, intron 11 of 11) intron (NM_033624, intron 11 of 11) 40759 NM_033624 23014 Hs.740376 XM_005253857 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 3099 chr7 2849559 2856094 + 0 NA intron (NM_007353, intron 1 of 3) intron (NM_007353, intron 1 of 3) 2067 NM_001282441 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 448 chr16 10719405 10720508 + 0 NA Intergenic L1MB5|LINE|L1 -45417 NM_001424 2013 Hs.531561 XM_005255165 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 2631 chr9 113596945 113600226 + 0 NA Intergenic MIRc|SINE|MIR 167534 NM_001166280 4593 Hs.521653 XM_005251994 ENSG00000030304 MUSK - muscle, skeletal, receptor tyrosine kinase protein-coding 2278 chr5 39091826 39094949 + 0 NA Intergenic Intergenic -18877 NM_152756 253260 Hs.407926 XM_005248277 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR, complex 2 protein-coding 2427 chr7 139155970 139158121 + 0 NA intron (NM_198508, intron 3 of 4) L1M5|LINE|L1 11412 NM_198508 346689 Hs.17572 XM_005250311 KLRG2 CLEC15B killer cell lectin-like receptor subfamily G, member 2 protein-coding 63 chr1 120838816 120840644 + 0 NA 5' UTR (NM_001100910, exon 1 of 4) 5' UTR (NM_001100910, exon 1 of 4) 725 NM_001100910 653820 Hs.339665 XM_005271147 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 1637 chr12 32086166 32087933 + 0 NA Intergenic Intergenic -25304 NM_018169 55196 Hs.445129 XM_005253405 ENSG00000174718 KIAA1551 C12orf35 KIAA1551 protein-coding 179 chr11 34689065 34690803 + 0 NA Intergenic Intergenic 35923 NM_001206616 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 1532 chr11 65676428 65689272 + 0 NA Intergenic Intergenic 3681 NM_031450 83638 Hs.433573 NM_001135635 ENSG00000175573 C11orf68 BLES03|P5326 chromosome 11 open reading frame 68 protein-coding 1105 chr7 102247026 102247866 + 0 NA intron (NM_001277335, intron 4 of 19) intron (NM_001277335, intron 4 of 19) 9757 NM_001277335 100271927 Hs.530089 XM_005250084 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 713 chr2 86153575 86154845 + 0 NA Intergenic Intergenic -38053 NM_003896 8869 Hs.415117 XM_005264630 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 1334 chrX 40860792 40862296 + 0 NA Intergenic Intergenic -83344 NM_001039590 8239 Hs.77578 XM_005272675 ENSG00000124486 USP9X DFFRX|FAF|FAM|RP5-1172N10.4 ubiquitin specific peptidase 9, X-linked protein-coding 2499 chr8 17589220 17596153 + 0 NA intron (NM_001001924, intron 3 of 14) intron (NM_001001924, intron 3 of 14) -12602 NM_001166393 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2805 chr14 29129577 29131395 + 0 NA Intergenic L1MCc|LINE|L1 -105792 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 2096 chr21 16370088 16375002 + 0 NA intron (NM_003489, intron 3 of 3) intron (NM_003489, intron 3 of 3) 64581 NM_003489 8204 Hs.155017 XM_005261062 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 1784 chr15 90363189 90369348 + 0 NA Intergenic Intergenic -8196 NM_001150 290 Hs.1239 XM_005254892 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl (membrane) aminopeptidase protein-coding 2839 chr15 80256838 80262007 + 0 NA intron (NM_004049, intron 1 of 1) MIR|SINE|MIR 4221 NM_004049 597 Hs.227817 NM_001114735 ENSG00000140379 BCL2A1 ACC-1|ACC-2|BCL2L5|BFL1|GRS|HBPA1 BCL2-related protein A1 protein-coding 938 chr4 175634532 175635037 + 0 NA intron (NM_006529, intron 5 of 9) intron (NM_006529, intron 5 of 9) 115682 NM_001042543 8001 Hs.413099 XM_005263235 ENSG00000145451 GLRA3 - glycine receptor, alpha 3 protein-coding 2149 chr3 24194125 24199682 + 0 NA intron (NM_001128177, intron 5 of 10) intron (NM_001128177, intron 5 of 10) -52165 NR_026834 152024 Hs.385606 XR_245096 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 1679 chr13 67507073 67509023 + 0 NA intron (NM_203487, intron 2 of 4) intron (NM_203487, intron 2 of 4) -43473 NR_046636 100874086 Hs.738194 XR_245371 ENSG00000225263 PCDH9-AS3 RP11-138D23.2 PCDH9 antisense RNA 3 ncRNA 1830 chr16 30099208 30104823 + 0 NA intron (NM_004608, intron 3 of 8) intron (NM_004608, intron 3 of 8) 1190 NM_004608 6911 Hs.198301 XM_005255523 ENSG00000149922 TBX6 - T-box 6 protein-coding 1620 chr12 116860400 116875820 + 0 NA Intergenic Intergenic -1987 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 2241 chr4 75507010 75510322 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 28037 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 3060 chr5 28614480 28615844 + 0 NA Intergenic Intergenic -311815 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 1262 chr8 129045736 129051508 + 0 NA intron (NR_003367, intron 4 of 7) intron (NR_003367, intron 4 of 7) -12776 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 3167 chr8 41599784 41602006 + 0 NA intron (NM_001142446, intron 2 of 42) intron (NM_001142446, intron 2 of 42) 54245 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 1290 chr8 144814539 144816575 + 0 NA promoter-TSS (NR_033849) promoter-TSS (NR_033849) -234 NR_039810 100616318 NR_039810 ENSG00000265660 MIR4664 - microRNA 4664 ncRNA 1527 chr11 57222853 57233446 + 0 NA 5' UTR (NM_178570, exon 1 of 3) 5' UTR (NM_178570, exon 1 of 3) 139 NM_178570 349667 Hs.603388 XM_005273973 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor-like 2 protein-coding 2162 chr3 129332959 129336377 + 0 NA Intergenic L2b|LINE|L2 -9086 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 1132 chr8 131694159 131695662 + 0 NA Intergenic LTR81A|LTR|Gypsy -239004 NM_018482 50807 Hs.655552 XM_005250925 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 2370 chr6 134311600 134313799 + 0 NA intron (NM_145176, intron 4 of 4) intron (NM_145176, intron 4 of 4) 38398 NM_004865 9519 Hs.486507 NM_001253676 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TBP-like 1 protein-coding 929 chr4 102786403 102787181 + 0 NA intron (NM_001083907, intron 4 of 16) L1MCa|LINE|L1 51809 NM_001083907 55024 Hs.480400 NM_001083907 ENSG00000153064 BANK1 BANK B-cell scaffold protein with ankyrin repeats 1 protein-coding 2554 chr8 98796849 98799739 + 0 NA intron (NM_018407, intron 1 of 6) intron (NM_018407, intron 1 of 6) 10485 NM_018407 55353 Hs.492314 NM_018407 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 1925 chr18 37378416 37380755 + 0 NA Intergenic AluY|SINE|Alu -47626 NR_024391 647946 Hs.649350 NR_024391 ENSG00000267374 LINC00669 RP11-244M2.1 long intergenic non-protein coding RNA 669 ncRNA 2916 chr2 216277552 216285569 + 0 NA intron (NM_212474, intron 12 of 43) intron (NM_212474, intron 12 of 43) 19231 NM_212478 2335 Hs.203717 XM_005246397 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF fibronectin 1 protein-coding 2574 chr8 128265380 128266742 + 0 NA Intergenic Intergenic -34548 NR_108049 100507056 Hs.343864 XR_108886 ENSG00000247844 CCAT1 - colon cancer associated transcript 1 (non-protein coding) ncRNA 3126 chr7 81266426 81269191 + 0 NA Intergenic Intergenic 131644 NM_001010933 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 547 chr17 44872385 44873561 + 0 NA intron (NM_030753, intron 1 of 4) intron (NM_030753, intron 1 of 4) 23153 NM_030753 7473 Hs.745220 NM_030753 ENSG00000108379 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 631 chr19 9188873 9190884 + 0 NA Intergenic AluSx|SINE|Alu -14043 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor, family 1, subfamily M, member 1 protein-coding 1616 chr12 76325220 76343606 + 0 NA Intergenic Intergenic 91143 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 1583 chr11 68143606 68152638 + 0 NA intron (NM_002335, intron 5 of 22) intron (NM_002335, intron 5 of 22) 68014 NM_002335 4041 Hs.6347 XM_005273994 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2 low density lipoprotein receptor-related protein 5 protein-coding 1544 chr11 2960805 2963632 + 0 NA Intergenic Intergenic -11568 NM_003311 7262 Hs.154036 NM_003311 ENSG00000181649 PHLDA2 BRW1C|BWR1C|HLDA2|IPL|TSSC3 pleckstrin homology-like domain, family A, member 2 protein-coding 1538 chr11 267506 268379 + 0 NA Intergenic Intergenic -10628 NM_001276700 171389 Hs.352611 NM_001276700 ENSG00000174885 NLRP6 AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5 NLR family, pyrin domain containing 6 protein-coding 396 chr15 53879798 53884464 + 0 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) -48831 NR_102335 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 258 chr12 27904025 27905543 + 0 NA intron (NM_021821, intron 7 of 7) LTR18B|LTR|ERVL 19425 NM_001146221 100287284 Hs.202178 NM_001146221 ENSG00000205693 MANSC4 - MANSC domain containing 4 protein-coding 1422 chr1 98519126 98521639 + 0 NA Intergenic Intergenic -5133 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene (non-protein coding) ncRNA 482 chr16 58497320 58499051 + 0 NA promoter-TSS (NM_022910) promoter-TSS (NM_022910) 191 NM_001130487 65009 Hs.322430 NM_001130487 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 2620 chr9 77385112 77386466 + 0 NA intron (NM_017662, intron 25 of 38) L2a|LINE|L2 116474 NM_001177311 140803 Hs.272225 XM_005251714 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel, subfamily M, member 6 protein-coding 949 chr5 14202438 14203047 + 0 NA intron (NM_007118, intron 1 of 56) THE1B|LTR|ERVL-MaLR 58913 NM_007118 7204 Hs.130031 XR_241714 ENSG00000038382 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 499 chr16 85721633 85722693 + 0 NA intron (NM_016095, intron 1 of 4) AluSx1|SINE|Alu 425 NM_016095 51659 Hs.433180 NM_016095 GINS2 HSPC037|PSF2|Pfs2 GINS complex subunit 2 (Psf2 homolog) protein-coding 1047 chr6 107267620 107269189 + 0 NA Intergenic LTR35A|LTR|ERV1 -33104 NR_033557 100422737 Hs.634681 XR_245495 ENSG00000235142 RP1-60O19.1 - uncharacterized LOC100422737 ncRNA 2138 chr22 46318767 46324813 + 0 NA intron (NM_058238, intron 3 of 3) intron (NM_058238, intron 3 of 3) 51218 NM_058238 7477 Hs.512714 XM_005261729 ENSG00000188064 WNT7B - wingless-type MMTV integration site family, member 7B protein-coding 1055 chr7 15596295 15597912 + 0 NA intron (NM_001004320, intron 2 of 12) intron (NM_001004320, intron 2 of 12) 4537 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 2447 chr8 17633003 17669257 + 0 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 7296 NM_001001924 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 1276 chr8 134656866 134658672 + 0 NA Intergenic Intergenic -73586 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 3228 chr8 141318595 141321203 + 0 NA intron (NM_031466, intron 10 of 22) intron (NM_031466, intron 10 of 22) 147962 NM_001160372 83696 Hs.733622 XM_005251077 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 3140 chr8 142291812 142295501 + 0 NA Intergenic Intergenic -28928 NM_001286646 57210 Hs.372492 XM_005251001 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 141 chr10 128127992 128129649 + 0 NA intron (NM_001004298, intron 6 of 8) L1PB1|LINE|L1 -18372 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 RP11-422P15.3 long intergenic non-protein coding RNA 601 ncRNA 909 chr4 38788708 38790747 + 0 NA Intergenic A-rich|Low_complexity|Low_complexity -5116 NM_001195108 81793 Hs.730896 XM_005262671 ENSG00000174123 TLR10 CD290 toll-like receptor 10 protein-coding 3043 chr4 162840796 162842419 + 0 NA exon (NM_001128428, exon 4 of 15) exon (NM_001128428, exon 4 of 15) 243579 NM_020116 56884 Hs.32452 NM_001128427 ENSG00000168843 FSTL5 - follistatin-like 5 protein-coding 2981 chr3 12457361 12459828 + 0 NA exon (NM_138712, exon 7 of 8) exon (NM_138712, exon 7 of 8) 65593 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator-activated receptor gamma protein-coding 2618 chr9 44536687 44542965 + 0 NA Intergenic Intergenic 152439 NR_046203 643648 Hs.742595 NR_046203 LINC01189 RP11-211N8.7 long intergenic non-protein coding RNA 1189 ncRNA 1124 chr8 62603516 62638277 + 0 NA intron (NM_032466, intron 1 of 13) intron (NM_032466, intron 1 of 13) 6303 NM_004318 444 Hs.332422 XM_005251235 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 1230 chr8 82192156 82194768 + 0 NA intron (NM_001444, intron 1 of 3) CpG 744 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 (psoriasis-associated) protein-coding 75 chr1 205904702 205906050 + 0 NA intron (NM_134325, intron 1 of 21) intron (NM_134325, intron 1 of 21) 7212 NM_134325 115019 Hs.164073 NM_052934 ENSG00000174502 SLC26A9 - solute carrier family 26 (anion exchanger), member 9 protein-coding 2793 chr12 116697298 116700046 + 0 NA intron (NM_015335, intron 1 of 30) intron (NM_015335, intron 1 of 30) 16319 NM_015335 23389 Hs.715095 XM_005253860 ENSG00000123066 MED13L PROSIT240|THRAP2|TRAP240L mediator complex subunit 13-like protein-coding 2993 chr3 78785489 78787634 + 0 NA intron (NM_133631, intron 3 of 28) MIRb|SINE|MIR 282048 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 2588 chr8 134697388 134699380 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -114201 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1917 chr18 12740017 12744141 + 0 NA Intergenic AluY|SINE|Alu 39092 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome (prosome, macropain) assembly chaperone 2 protein-coding 1163 chr8 19548195 19549641 + 0 NA Intergenic Intergenic -8657 NR_024040 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 450 chr16 14520641 14522531 + 0 NA Intergenic Intergenic 118444 NR_029854 100126355 NR_029854 ENSG00000199130 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a microRNA 365a ncRNA 1702 chr14 28777273 28779263 + 0 NA Intergenic HSMAR2|DNA|TcMar-Mariner -458010 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 3118 chr7 74401260 74403982 + 0 NA Intergenic AluY|SINE|Alu 87096 NM_001281441 81554 Hs.723684 NM_001281441 ENSG00000174374 WBSCR16 - Williams-Beuren syndrome chromosome region 16 protein-coding 1405 chr1 33563791 33566939 + 0 NA intron (NM_052998, intron 10 of 11) intron (NM_052998, intron 10 of 11) 18651 NM_052998 113451 Hs.101807 XM_005270404 ENSG00000142920 ADC AZI2|ODC-p|ODC1L arginine decarboxylase protein-coding 1713 chr14 42938628 42940170 + 0 NA Intergenic Intergenic 862635 NM_152447 145581 Hs.136893 XM_005267368 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1060 chr7 2840861 2841714 + 0 NA intron (NM_007353, intron 1 of 3) intron (NM_007353, intron 1 of 3) 13606 NM_001282441 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 2420 chr7 102147455 102149071 + 0 NA intron (NM_001277335, intron 4 of 19).2 intron (NM_001277335, intron 4 of 19).2 9961 NM_001277335 100271927 Hs.530089 XM_005250084 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 2104 chr21 44143631 44145924 + 0 NA intron (NM_001001584, intron 3 of 17) intron (NM_001001584, intron 3 of 17) 70915 NM_001001572 5152 Hs.473927 XM_005261131 ENSG00000160191 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 2894 chr19 30881713 30885123 + 0 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 20090 NM_014717 9745 Hs.378901 XM_005259445 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 2126 chr22 35957320 35959674 + 0 NA Intergenic Intergenic 21145 NM_014310 23551 Hs.474711 XM_005261441 ENSG00000100302 RASD2 MGC:4834|Rhes|TEM2 RASD family, member 2 protein-coding 2858 chr17 35206754 35209318 + 0 NA Intergenic AluJr|SINE|Alu -86736 NM_005568 3975 Hs.443727 NM_005568 ENSG00000132130 LHX1 LIM-1|LIM1 LIM homeobox 1 protein-coding 900 chr4 1767514 1769836 + 0 NA Intergenic CpG -26364 NM_000142 2261 Hs.1420 NM_000142 ENSG00000068078 FGFR3 ACH|CD333|CEK2|HSFGFR3EX|JTK4 fibroblast growth factor receptor 3 protein-coding 318 chr12 125162759 125170352 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -114545 NM_001206654 9612 Hs.137510 XM_005253638 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1729 chr14 101158043 101161082 + 0 NA Intergenic L2a|LINE|L2 -33640 NM_003836 8788 Hs.533717 XM_005268153 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta-like 1 homolog (Drosophila) protein-coding 2526 chr8 32198131 32201746 + 0 NA intron (NM_013962, intron 1 of 4) MIR|SINE|MIR -98324 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 972 chr5 76372509 76373840 + 0 NA exon (NM_032367, exon 3 of 3) exon (NM_032367, exon 3 of 3) 3222 NR_003014 677828 Hs.693249 NR_003014 ENSG00000238961 SNORA47 HBI-115 small nucleolar RNA, H/ACA box 47 snoRNA 473 chr16 30102637 30104149 + 0 NA promoter-TSS (NM_004608) promoter-TSS (NM_004608) -188 NM_004608 6911 Hs.198301 XM_005255523 ENSG00000149922 TBX6 - T-box 6 protein-coding 2572 chr8 126388559 126393564 + 0 NA Intergenic L1MEc|LINE|L1 -51502 NM_025195 10221 Hs.444947 XM_005250752 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 1774 chr15 69590399 69593170 + 0 NA intron (NM_017705, intron 1 of 8) intron (NM_017705, intron 1 of 8) 490 NM_017705 54852 Hs.591096 XM_005254494 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member V protein-coding 3 chr1 23854037 23858697 + 0 NA intron (NM_004091, intron 1 of 6) intron (NM_004091, intron 1 of 6) 1345 NM_004091 1870 Hs.194333 XM_005245748 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 248 chr12 63108169 63113321 + 0 NA intron (NM_020700, intron 6 of 9) intron (NM_020700, intron 6 of 9) 113279 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 146 chr10 134262604 134263493 + 0 NA Intergenic Intergenic 4334 NM_173541 170393 Hs.375059 NM_173541 C10orf91 RP11-432J24.4|bA432J24.4 chromosome 10 open reading frame 91 protein-coding 3202 chr8 97349533 97352567 + 0 NA Intergenic Intergenic 76883 NM_014754 9791 Hs.292579 NM_014754 PTDSS1 PSS1|PSSA phosphatidylserine synthase 1 protein-coding 1351 chrX 150009848 150010925 + 0 NA intron (NM_031462, intron 1 of 10) L4|LINE|RTE 56903 NM_001184808 83692 Hs.522805 XM_005274757 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 2396 chr7 11788391 11794291 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 80483 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 356 chr14 65720751 65723119 + 0 NA Intergenic MamGypLTR1a|LTR|Gypsy -32870 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 802 chr22 30618537 30622252 + 0 NA Intergenic Intergenic 22446 NM_001257135 3976 Hs.2250 XM_005261601 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 2720 chr10 13754084 13755822 + 0 NA intron (NM_018027, intron 12 of 24) intron (NM_018027, intron 12 of 24) 126014 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 2063 chr2 238109682 238112172 + 0 NA Intergenic Intergenic 116843 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 528 chr17 25797335 25801566 + 0 NA intron (NM_014238, intron 1 of 20) intron (NM_014238, intron 1 of 20) 414 NM_014238 8844 Hs.133534 NM_014238 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 164 chr11 1848005 1849173 + 0 NA Intergenic Intergenic -7085 NM_138567 90019 Hs.161031 XM_005253216 ENSG00000149043 SYT8 - synaptotagmin VIII protein-coding 807 chr22 21809766 21812368 + 0 NA Intergenic FRAM|SINE|Alu -10392 NM_001207052 645426 Hs.645547 XM_005276703 TMEM191C AC023490.1 transmembrane protein 191C protein-coding 2040 chr2 169745602 169747237 + 0 NA intron (NM_020675, intron 1 of 6) intron (NM_020675, intron 1 of 6) 525 NM_020675 57405 Hs.421956 XM_005246702 ENSG00000152253 SPC25 SPBC25|hSpc25 SPC25, NDC80 kinetochore complex component protein-coding 2678 chr1 8129862 8131893 + 0 NA Intergenic Intergenic -44484 NM_018948 54206 Hs.605445 XM_005263477 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 2632 chr9 114726400 114729929 + 0 NA Intergenic L2c|LINE|L2 33784 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 1049 chr6 127428685 127429707 + 0 NA Intergenic LTR81A|LTR|Gypsy -10852 NM_032784 84870 Hs.135254 XM_005267167 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 2898 chr19 2220026 2222599 + 0 NA intron (NM_032482, intron 23 of 27) intron (NM_032482, intron 23 of 27) 12836 NR_031596 100302283 NR_031596 MIR1227 MIRN1227|hsa-mir-1227 microRNA 1227 ncRNA 882 chr3 129323884 129326770 + 0 NA exon (NM_015103, exon 1 of 36) exon (NM_015103, exon 1 of 36) 255 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 2812 chr14 57930111 57931856 + 0 NA Intergenic Intergenic 29598 NM_001283057 55195 Hs.659706 XM_005267804 ENSG00000100557 C14orf105 - chromosome 14 open reading frame 105 protein-coding 1050 chr6 136315866 136318721 + 0 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 144459 NM_018945 27115 Hs.744230 XM_005266931 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 1488 chr10 37512855 37515067 + 0 NA intron (NM_052997, intron 34 of 35) intron (NM_052997, intron 34 of 35) -84153 NR_104061 101929520 Hs.144151 XR_242757 LINC00993 RP11-20F24.4 long intergenic non-protein coding RNA 993 ncRNA 560 chr17 64542992 64546938 + 0 NA intron (NM_002737, intron 3 of 16) AluJb|SINE|Alu -238225 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 2830 chr15 36706553 36708309 + 0 NA Intergenic Intergenic -164381 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 798 chr21 38280933 38283800 + 0 NA intron (NM_001242784, intron 6 of 11) intron (NM_001242784, intron 6 of 11) 56590 NM_001242784 3141 Hs.732538 XM_005260953 ENSG00000159267 HLCS HCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding 898 chr3 185540752 185544109 + 0 NA intron (NM_001007225, intron 1 of 14) CpG 397 NM_006548 10644 Hs.35354 XM_005247073 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2|p62 insulin-like growth factor 2 mRNA binding protein 2 protein-coding 2725 chr10 33499972 33502655 + 0 NA intron (NM_001244972, intron 9 of 16) L1MB2|LINE|L1 122520 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 1031 chr6 33806899 33809473 + 0 NA Intergenic Intergenic -36393 NM_002418 4295 Hs.2813 NM_001040109 ENSG00000096395 MLN - motilin protein-coding 1273 chr8 131273437 131278545 + 0 NA intron (NM_018482, intron 3 of 29) MIR|SINE|MIR 32788 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 2942 chr2 204266503 204270516 + 0 NA intron (NM_001282925, intron 9 of 10) AluSx1|SINE|Alu 36902 NM_001282927 10152 Hs.471156 XM_005246217 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl-interactor 2 protein-coding 2516 chr8 27861173 27864110 + 0 NA Intergenic MER57B1|LTR|ERV1 -12272 NM_173833 286133 Hs.591833 XM_005273479 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A, member 5 (putative) protein-coding 451 chr16 14542033 14545322 + 0 NA intron (NM_001134477, intron 22 of 23) L1MC4a|LINE|L1 140535 NR_029854 100126355 NR_029854 ENSG00000199130 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a microRNA 365a ncRNA 3139 chr8 142031809 142034701 + 0 NA Intergenic Intergenic -21843 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 2616 chr9 43487788 43492236 + 0 NA Intergenic Intergenic 140718 NM_001145196 389730 Hs.455299 XM_005273694 ENSG00000185775 SPATA31A6 FAM75A6 SPATA31 subfamily A, member 6 protein-coding 454 chr16 15489332 15490330 + 0 NA exon (NM_001128423, exon 1 of 4) exon (NM_001128423, exon 1 of 4) 220 NM_001128423 255027 Hs.720673 XM_005255235 MPV17L M-LPH|MLPH1|MLPH2|MPV17L1 MPV17 mitochondrial membrane protein-like protein-coding 2538 chr8 48342493 48346159 + 0 NA intron (NM_001080394, intron 7 of 19) intron (NM_001080394, intron 7 of 19) 170856 NM_001080394 23514 Hs.381058 XM_005251189 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 1364 chr1 156366571 156370832 + 0 NA Intergenic AluYb8|SINE|Alu 21520 NR_029691 407046 NR_029691 MIR9-1 MIRN9-1|hsa-mir-9-1|miRNA9-1 microRNA 9-1 ncRNA 1408 chr1 46713249 46715088 + 0 NA intron (NM_003579, intron 1 of 17) intron (NM_003579, intron 1 of 17) 801 NM_003579 8438 Hs.642042 XM_005271272 ENSG00000085999 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54-like (S. cerevisiae) protein-coding 2448 chr8 17747647 17771913 + 0 NA Intergenic AluSx1|SINE|Alu -6733 NM_004467 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 2969 chr22 30100326 30101595 + 0 NA Intergenic Intergenic -15384 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 634 chr19 14245636 14247624 + 0 NA intron (NM_018154, intron 1 of 3) intron (NM_018154, intron 1 of 3) 810 NM_018154 55723 Hs.26516 NM_018154 ENSG00000105011 ASF1B CIA-II anti-silencing function 1B histone chaperone protein-coding 2721 chr10 13907271 13909586 + 0 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 279489 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 578 chr17 78764757 78766742 + 0 NA intron (NM_020761, intron 7 of 33) intron (NM_020761, intron 7 of 33) -199892 NM_024591 79643 Hs.514560 XM_005257668 ENSG00000176108 CHMP6 VPS20 charged multivesicular body protein 6 protein-coding 2551 chr8 90808058 90814832 + 0 NA Intergenic L1MC3|LINE|L1 41470 NM_003821 8767 Hs.103755 XM_005251092 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor-interacting serine-threonine kinase 2 protein-coding 695 chr2 39053973 39055641 + 0 NA intron (NM_198963, intron 14 of 23) intron (NM_198963, intron 14 of 23) 48214 NM_198963 90957 Hs.468226 XM_005264635 ENSG00000163214 DHX57 DDX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 protein-coding 978 chr5 91887883 91889016 + 0 NA Intergenic Intergenic 1018050 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 2144 chr3 43905750 43915700 + 0 NA Intergenic L3|LINE|CR1 178350 NM_016006 51099 Hs.19385 XM_005265197 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 325 chr13 95619501 95621083 + 0 NA Intergenic CpG 255322 NR_046514 100507533 Hs.556071 XR_109146 SOX21-AS1 - SOX21 antisense RNA 1 (head to head) ncRNA 378 chr15 101498171 101499774 + 0 NA intron (NM_024652, intron 2 of 33) MIR|SINE|MIR 39512 NM_024652 79705 Hs.407918 XM_005254979 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine-rich repeat kinase 1 protein-coding 889 chr3 149047892 149052861 + 0 NA intron (NM_138786, intron 2 of 5) MIRb|SINE|MIR 883 NM_001184723 116441 Hs.22026 NM_001184723 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 1233 chr8 90812747 90814653 + 0 NA Intergenic LTR8A|LTR|ERV1 43725 NM_003821 8767 Hs.103755 XM_005251092 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor-interacting serine-threonine kinase 2 protein-coding 540 chr17 39803604 39806038 + 0 NA Intergenic CpG -8370 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 1162 chr8 19482122 19485491 + 0 NA intron (NR_024040, intron 1 of 9) L1MD2|LINE|L1 -23750 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 1615 chr12 76113448 76122197 + 0 NA Intergenic Charlie16a|DNA|hAT-Charlie -212404 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 3137 chr8 130924340 130925936 + 0 NA intron (NR_046360, intron 2 of 14) intron (NR_046360, intron 2 of 14) 26980 NM_001256763 51571 Hs.126941 XM_005250963 ENSG00000153310 FAM49B L1 family with sequence similarity 49, member B protein-coding 2831 chr15 36723633 36725024 + 0 NA Intergenic Intergenic -147484 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 211 chr11 65670118 65671356 + 0 NA Intergenic Intergenic -2740 NM_005438 8061 Hs.283565 XM_005274311 ENSG00000175592 FOSL1 FRA|FRA1|fra-1 FOS-like antigen 1 protein-coding 684 chr2 20792693 20793644 + 0 NA promoter-TSS (NR_046836) promoter-TSS (NR_046836) -860 NR_046836 100874343 Hs.591546 XR_244594 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 (non-protein coding) ncRNA 3065 chr5 67628805 67631673 + 0 NA Intergenic MamSINE1|SINE|tRNA 41843 NM_001242466 5295 Hs.734132 XM_005248542 ENSG00000145675 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 2073 chr20 3200682 3206588 + 0 NA intron (NR_052000, intron 6 of 6) intron (NR_052000, intron 6 of 6) 13501 NM_181493 3704 Hs.415299 NM_001267623 ENSG00000125877 ITPA C20orf37|HLC14-06-P|dJ794I6.3 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) protein-coding 1732 chr14 102028880 102032400 + 0 NA TTS (NM_001362) TTS (NM_001362) 2952 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 deiodinase, iodothyronine, type III protein-coding 861 chr3 32432635 32434313 + 0 NA exon (NM_138410, exon 1 of 5) exon (NM_138410, exon 1 of 5) 311 NM_181472 112616 Hs.440494 XM_005264841 ENSG00000153551 CMTM7 CKLFSF7 CKLF-like MARVEL transmembrane domain containing 7 protein-coding 337 chr14 101154769 101155971 + 0 NA Intergenic Intergenic 31765 NR_024096 283601 Hs.379802 NR_024096 ENSG00000196273 LINC00523 C14orf70 long intergenic non-protein coding RNA 523 ncRNA 2406 chr7 46471340 46473947 + 0 NA Intergenic Intergenic -511772 NM_001013398 3486 Hs.450230 XM_005249743 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 3172 chr8 49539281 49542096 + 0 NA intron (NR_105002, intron 2 of 3) AluSx1|SINE|Alu 7725 NR_105004 101929217 Hs.547790 XR_242463 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 76 chr1 206138282 206140075 + 0 NA 5' UTR (NM_001287385, exon 1 of 4) 5' UTR (NM_001287385, exon 1 of 4) 267 NM_001123168 729533 Hs.661924 NM_001123168 FAM72A LMPIP family with sequence similarity 72, member A protein-coding 1924 chr18 32507952 32510739 + 0 NA Intergenic Intergenic -47547 NM_001143826 10982 Hs.532824 NM_001143826 ENSG00000166974 MAPRE2 EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 protein-coding 2718 chr10 7342192 7345211 + 0 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 107602 NM_001018039 57713 Hs.407983 XM_005252550 ENSG00000198879 SFMBT2 - Scm-like with four mbt domains 2 protein-coding 3042 chr4 156820816 156822378 + 0 NA Intergenic Intergenic -3248 NM_005651 6999 Hs.593955 NM_005651 ENSG00000151790 TDO2 TDO|TO|TPH2|TRPO tryptophan 2,3-dioxygenase protein-coding 982 chr5 92914882 92921900 + 0 NA promoter-TSS (NM_005654) promoter-TSS (NM_005654) -652 NM_005654 7025 Hs.519445 XM_005272069 ENSG00000175745 NR2F1 COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2, group F, member 1 protein-coding 571 chr17 76330239 76331531 + 0 NA Intergenic Intergenic 25275 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 1214 chr8 54791918 54795617 + 0 NA intron (NR_104579, intron 1 of 3) CpG-25682 335 NR_104579 8601 Hs.368733 XM_005251323 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 1190 chr8 29624000 29626275 + 0 NA Intergenic Intergenic -19512 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 2592 chr8 142035905 142037943 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -25512 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 389 chr15 37203327 37205524 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -25691 NR_024264 145845 Hs.302693 NR_024264 LOC145845 - uncharacterized LOC145845 ncRNA 1660 chr12 104992270 105000838 + 0 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 11143 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 3207 chr8 107023078 107024928 + 0 NA Intergenic L1ME2|LINE|L1 -258403 NM_018002 55074 Hs.701892 XM_005250993 ENSG00000164830 OXR1 TLDC3 oxidation resistance 1 protein-coding 1171 chr8 25039888 25048218 + 0 NA intron (NM_024940, intron 1 of 51) AluSx|SINE|Alu 1766 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1345 chrX 96414738 96415579 + 0 NA intron (NM_007309, intron 22 of 26) LTR26|LTR|ERV1 276251 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4, 30kDa protein-coding 2290 chr5 17111095 17117399 + 0 NA Intergenic MIR3|SINE|MIR -102685 NM_001271606 10409 Hs.646924 NM_001271606 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 966 chr5 55736777 55737915 + 0 NA Intergenic Intergenic 40250 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 1123 chr8 62598772 62603492 + 0 NA intron (NM_032466, intron 1 of 13) intron (NM_032466, intron 1 of 13) 1276 NM_001164752 444 Hs.332422 XM_005251235 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 2314 chr5 92914394 92922499 + 0 NA promoter-TSS (NM_005654) promoter-TSS (NM_005654) -597 NM_005654 7025 Hs.519445 XM_005272069 ENSG00000175745 NR2F1 COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2, group F, member 1 protein-coding 2216 chr4 75542459 75554844 + 0 NA Intergenic Intergenic 68022 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 992 chr5 142612175 142614373 + 0 NA Intergenic AluY|SINE|Alu 169980 NM_001024094 2908 Hs.122926 XM_005268419 ENSG00000113580 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 236 chr11 114169950 114170974 + 0 NA intron (NM_006169, intron 2 of 2) L1MEf|LINE|L1 3927 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 758 chr20 10229132 10233221 + 0 NA intron (NM_130811, intron 1 of 7) intron (NM_130811, intron 1 of 7) -31022 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 1954 chr19 3141309 3143232 + 0 NA intron (NM_002068, intron 1 of 6) intron (NM_002068, intron 1 of 6) 6079 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) protein-coding 2843 chr16 14647192 14651931 + 0 NA exon (NM_001242992, exon 18 of 23) exon (NM_001242992, exon 18 of 23) 74567 NM_002582 5073 Hs.253197 XM_005255341 ENSG00000140694 PARN DAN poly(A)-specific ribonuclease protein-coding 218 chr11 68518350 68519751 + 0 NA promoter-TSS (NM_004923) promoter-TSS (NM_004923) -62 NM_004923 9633 Hs.145932 NM_001039656 ENSG00000132749 MTL5 CXCDC2|MTLT|TESMIN metallothionein-like 5, testis-specific (tesmin) protein-coding 706 chr2 69901616 69903392 + 0 NA Intergenic Intergenic -31527 NM_014911 22848 Hs.468878 XM_005264206 AAK1 RP11-427H3.3 AP2 associated kinase 1 protein-coding 14 chr1 178207208 178209625 + 0 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -102190 NM_004841 9462 Hs.496139 XM_005245619 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 2345 chr6 26232253 26237215 + 0 NA exon (NM_005320, exon 1 of 1) exon (NM_005320, exon 1 of 1) 482 NM_005320 3007 Hs.136857 NM_005320 ENSG00000124575 HIST1H1D H1.3|H1D|H1F3|H1s-2 histone cluster 1, H1d protein-coding 3124 chr7 81232852 81235338 + 0 NA Intergenic Intergenic 165357 NM_001010933 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 2587 chr8 134684984 134688901 + 0 NA Intergenic Intergenic -102759 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1608 chr11 122525575 122533060 + 0 NA intron (NM_032873, intron 1 of 13) MIR|SINE|MIR 2919 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 2973 chr22 46849250 46851995 + 0 NA intron (NM_014246, intron 2 of 34) intron (NM_014246, intron 2 of 34) 82445 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 CDHF9|FMI2|HFMI2|ME2 cadherin, EGF LAG seven-pass G-type receptor 1 protein-coding 2328 chr5 180590165 180593258 + 0 NA Intergenic Intergenic 9768 NM_206880 285659 Hs.553681 NM_206880 ENSG00000182613 OR2V2 OR2V3|OST713 olfactory receptor, family 2, subfamily V, member 2 protein-coding 2999 chr3 81319193 81321364 + 0 NA Intergenic LTR24B|LTR|ERV1 490672 NM_000158 2632 Hs.436062 XM_005264728 ENSG00000114480 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 2567 chr8 123705422 123707850 + 0 NA Intergenic Intergenic -87265 NM_014943 22882 Hs.658443 XM_005250836 ENSG00000178764 ZHX2 AFR1|RAF|RP11-44N11.3 zinc fingers and homeoboxes 2 protein-coding 3232 chr9 137116993 137119123 + 0 NA Intergenic Intergenic -88372 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 2474 chr8 127579986 127586653 + 0 NA Intergenic Intergenic -12608 NM_174911 157638 Hs.741352 XM_005250798 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 2889 chr18 43382058 43383923 + 0 NA Intergenic Intergenic -22555 NM_213602 284266 Hs.287692 XM_005258249 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig-like lectin 15 protein-coding 234 chr11 78797045 78800870 + 0 NA intron (NM_001098816, intron 4 of 33) intron (NM_001098816, intron 4 of 33) 314196 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 594 chr18 21196811 21199547 + 0 NA intron (NM_173505, intron 7 of 9) intron (NM_173505, intron 7 of 9) -31598 NM_000271 4864 Hs.715623 XM_005258277 ENSG00000141458 NPC1 NPC Niemann-Pick disease, type C1 protein-coding 2924 chr2 42313233 42315876 + 0 NA Intergenic L2a|LINE|L2 39393 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 1438 chr1 218877517 218882714 + 0 NA Intergenic UCON2|Unknown|Unknown -361095 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 RP11-224O19.2 - uncharacterized LOC728463 ncRNA 3158 chr8 25159589 25162847 + 0 NA intron (NM_024940, intron 10 of 51) AluSx|SINE|Alu -41700 NR_106936 102465527 NR_106936 MIR6876 hsa-mir-6876 microRNA mir-6876 ncRNA 1903 chr17 78037148 78039018 + 0 NA intron (NM_001243342, intron 9 of 17) intron (NM_001243342, intron 9 of 17) 27652 NM_017950 55036 Hs.202542 XM_005257491 ENSG00000141519 CCDC40 CILD15|FAP172 coiled-coil domain containing 40 protein-coding 2767 chr11 88167175 88168573 + 0 NA Intergenic LTR18B|LTR|ERVL -69870 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 RP11-657K20.2 GRM5 antisense RNA 1 ncRNA 2188 chr3 87253914 87259580 + 0 NA Intergenic Intergenic 18680 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 1778 chr15 71698961 71708669 + 0 NA intron (NM_024817, intron 5 of 16) L1MB7|LINE|L1 -135726 NM_001286429 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 2339 chr6 47118424 47122831 + 0 NA Intergenic LTR16A|LTR|ERVL -110545 NM_153840 266977 Hs.733762 XM_005249004 ENSG00000153292 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 1859 chr17 39108351 39117579 + 0 NA Intergenic MIRc|SINE|MIR 10179 NM_213656 390792 Hs.28467 NM_213656 ENSG00000196859 KRT39 CK-39|K39|KA35 keratin 39 protein-coding 160 chr11 267508 268074 + 0 NA Intergenic Intergenic -10779 NM_001276700 171389 Hs.352611 NM_001276700 ENSG00000174885 NLRP6 AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5 NLR family, pyrin domain containing 6 protein-coding 3116 chr7 67228484 67230718 + 0 NA Intergenic Intergenic 428638 NR_108104 101929736 Hs.634050 XR_242296 RP11-166O4.5 - uncharacterized LOC101929736 ncRNA 2776 chr12 10320969 10323729 + 0 NA promoter-TSS (NM_001079815) promoter-TSS (NM_001079815) -849 NM_001079815 120939 Hs.226422 XM_005253298 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 98 chr10 13738357 13739664 + 0 NA intron (NM_018027, intron 14 of 24) intron (NM_018027, intron 14 of 24) 110071 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 2901 chr19 5869698 5871720 + 0 NA promoter-TSS (NM_002034) promoter-TSS (NM_002034) -158 NM_002034 2527 Hs.631843 NM_002034 ENSG00000130383 FUT5 FUC-TV fucosyltransferase 5 (alpha (1,3) fucosyltransferase) protein-coding 1048 chr6 127427986 127428664 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -11723 NM_032784 84870 Hs.135254 XM_005267167 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 1278 chr8 134685982 134688318 + 0 NA Intergenic Intergenic -102967 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 2434 chr7 157281480 157283970 + 0 NA intron (NR_110157, intron 2 of 3) AluSx1|SINE|Alu 23800 NR_110157 101927914 Hs.623826 XR_242052 AC006372.4 - uncharacterized LOC101927914 ncRNA 1000 chr5 179755121 179762922 + 0 NA intron (NM_005110, intron 4 of 18) MER102b|DNA|hAT-Charlie 21294 NM_005110 9945 Hs.696497 XM_005266017 ENSG00000131459 GFPT2 GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 1381 chr1 196620123 196626872 + 0 NA intron (NM_001014975, intron 1 of 9) intron (NM_001014975, intron 1 of 9) 2489 NM_001014975 3075 Hs.363396 XM_005245111 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 43 chr1 55972145 55973848 + 0 NA Intergenic Intergenic 281682 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 - microRNA 4422 ncRNA 1061 chr7 2841949 2843589 + 0 NA intron (NM_007353, intron 1 of 3) intron (NM_007353, intron 1 of 3) 12124 NM_001282441 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 2582 chr8 131269056 131279075 + 0 NA intron (NM_018482, intron 3 of 29) intron (NM_018482, intron 3 of 29) 34714 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 2054 chr2 228230351 228233046 + 0 NA intron (NM_024795, intron 2 of 3) intron (NM_024795, intron 2 of 3) 12324 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 1728 chr14 97263393 97265376 + 0 NA intron (NM_003384, intron 1 of 12) L2a|LINE|L2 700 NM_003384 7443 Hs.422662 XM_005268040 ENSG00000100749 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 2785 chr12 75212007 75215409 + 0 NA Intergenic Intergenic 282157 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B - ataxin 7-like 3B protein-coding 3224 chr8 134467312 134470580 + 0 NA 3' UTR (NM_173344, exon 10 of 10) 3' UTR (NM_173344, exon 10 of 10) 115237 NM_173344 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 193 chr11 57405056 57408708 + 0 NA Intergenic Intergenic -1789 NR_029673 406919 NR_029673 ENSG00000208009 MIR130A MIRN130A|miRNA130A microRNA 130a ncRNA 288 chr12 76375719 76378172 + 0 NA Intergenic Intergenic 48611 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 119 chr10 34763861 34765178 + 0 NA intron (NM_001184790, intron 3 of 22) Charlie1a|DNA|hAT-Charlie 339734 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1555 chr11 27894299 27897892 + 0 NA Intergenic Intergenic -152490 NM_170731 627 Hs.502182 XM_005253060 ENSG00000176697 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 586 chr18 656700 659120 + 0 NA exon (NM_001012716, exon 1 of 2) exon (NM_001012716, exon 1 of 2) 306 NM_001071 7298 Hs.369762 XM_005258137 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 2870 chr17 45343060 45346367 + 0 NA intron (NM_000212, intron 1 of 14) intron (NM_000212, intron 1 of 14) 13505 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding 2859 chr17 39253671 39257024 + 0 NA promoter-TSS (NM_031960) promoter-TSS (NM_031960) -972 NM_031960 728224 Hs.307019 XM_003846479 ENSG00000204880 KRTAP4-8 KAP4.8|KRTAP4.8 keratin associated protein 4-8 protein-coding 410 chr15 71585217 71590232 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) 153936 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 3193 chr8 89309943 89311209 + 0 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 29141 NM_005941 4325 Hs.546267 XM_005250921 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 999 chr5 179754000 179754872 + 0 NA intron (NM_005110, intron 7 of 18) intron (NM_005110, intron 7 of 18) 25879 NM_005110 9945 Hs.696497 XM_005266017 ENSG00000131459 GFPT2 GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 3019 chr4 75527115 75530705 + 0 NA Intergenic Intergenic 48281 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 1180 chr8 25118008 25119972 + 0 NA intron (NM_024940, intron 2 of 51) MARNA|DNA|TcMar-Mariner 76703 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2169 chr3 15647095 15650528 + 0 NA intron (NM_001281725, intron 1 of 3) intron (NM_001281725, intron 1 of 3) 5335 NM_001281725 686 Hs.517830 XM_005265414 ENSG00000169814 BTD - biotinidase protein-coding 430 chr16 23689330 23693322 + 0 NA intron (NM_005030, intron 1 of 9) intron (NM_005030, intron 1 of 9) 1125 NM_005030 5347 Hs.592049 NM_005030 ENSG00000166851 PLK1 PLK|STPK13 polo-like kinase 1 protein-coding 1185 chr8 29315581 29318639 + 0 NA Intergenic Intergenic -108843 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 447 chr16 10673391 10675175 + 0 NA intron (NM_001424, intron 1 of 4) CpG 256 NM_001424 2013 Hs.531561 XM_005255165 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 3258 chrX 149939796 149942051 + 0 NA intron (NM_001242614, intron 9 of 11) intron (NM_001242614, intron 9 of 11) 79054 NM_003828 8776 Hs.347187 XM_005274765 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 1446 chr10 102104496 102112737 + 0 NA intron (NM_005063, intron 2 of 5) intron (NM_005063, intron 2 of 5) 1844 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS stearoyl-CoA desaturase (delta-9-desaturase) protein-coding 1741 chr15 70778189 70781174 + 0 NA Intergenic Intergenic 214939 NM_001008224 55075 Hs.108049 XM_005254527 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 2118 chr22 21909449 21911729 + 0 NA intron (NM_001256355, intron 1 of 3) FRAM|SINE|Alu -4839 NM_001128633 150221 Hs.447643 NM_001128633 ENSG00000183246 RIMBP3C RIM-BP3.3|RIMBP3.3 RIMS binding protein 3C protein-coding 415 chr15 75415643 75417524 + 0 NA Intergenic LTR16E2|LTR|ERVL -77638 NM_015492 56905 Hs.17936 XM_005254551 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 1130 chr8 129120363 129122912 + 0 NA Intergenic Intergenic -40725 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 1315 chr9 114727222 114728689 + 0 NA Intergenic L2c|LINE|L2 33575 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 189 chr11 47962217 47970982 + 0 NA Intergenic AluJb|SINE|Alu -35511 NM_001098503 5795 Hs.318547 XM_005253038 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 2597 chr8 143755767 143761013 + 0 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -3484 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 1292 chr8 145753455 145755162 + 0 NA TTS (NM_025251) TTS (NM_025251) 150 NM_001001795 414919 Hs.105685 XM_005272319 C8orf82 - chromosome 8 open reading frame 82 protein-coding 2330 chr6 136313903 136319353 + 0 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 143794 NM_018945 27115 Hs.744230 XM_005266931 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 1356 chrY 146454 147224 + 0 NA intron (NR_028057, intron 1 of 8).2 intron (NR_028057, intron 1 of 8).2 -1222 NM_018390 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 2849 chr16 9160980 9163289 + 0 NA Intergenic Intergenic -23403 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 480 chr16 57925893 57929412 + 0 NA intron (NM_001286130, intron 31 of 32) AluSx|SINE|Alu 77368 NM_001135639 1258 Hs.147062 XM_005255797 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 107 chr10 33410957 33411746 + 0 NA Intergenic Intergenic -164058 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 438 chr16 69565399 69567891 + 0 NA Intergenic MIRc|SINE|MIR 33126 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 1153 chr8 17752281 17755721 + 0 NA promoter-TSS (NM_004467) promoter-TSS (NM_004467) -954 NM_004467 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 1871 chr17 80820877 80822942 + 0 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -23978 NM_024702 79755 Hs.653124 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 2385 chr7 83689054 83691444 + 0 NA intron (NM_006080, intron 4 of 16) intron (NM_006080, intron 4 of 16) 133968 NM_006080 10371 Hs.252451 XM_005250110 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 87 chr10 22331140 22332526 + 0 NA Intergenic Intergenic -39183 NM_022365 64215 Hs.499000 XM_005252554 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ (Hsp40) homolog, subfamily C, member 1 protein-coding 1022 chr6 26272480 26275616 + 0 NA TTS (NM_003525) TTS (NM_003525) 844 NM_003525 8346 Hs.553506 NM_003525 ENSG00000168242 HIST1H2BI H2B/k|H2BFK histone cluster 1, H2bi protein-coding 1832 chr16 46653156 46655856 + 0 NA intron (NM_024745, intron 1 of 12) intron (NM_024745, intron 1 of 12) 805 NM_024745 79801 Hs.123253 NM_024745 ENSG00000171241 SHCBP1 PAL SHC SH2-domain binding protein 1 protein-coding 2795 chr13 20701417 20702650 + 0 NA Intergenic CpG 33150 NM_021954 2700 Hs.130313 XM_005266353 ENSG00000121743 GJA3 CTRCT14|CX46|CZP3 gap junction protein, alpha 3, 46kDa protein-coding 2704 chr1 196406517 196407833 + 0 NA intron (NM_001287819, intron 8 of 26) MIRb|SINE|MIR 144436 NR_039888 100616363 NR_039888 MIR4735 - microRNA 4735 ncRNA 953 chr5 23419248 23420722 + 0 NA Intergenic Intergenic -87739 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 MEISETZ|MSBP3|PFM6|PRMD9|ZNF899 PR domain containing 9 protein-coding 221 chr11 69061514 69071131 + 0 NA Intergenic Intergenic 4700 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 3147 chr8 17598006 17600479 + 0 NA intron (NM_001001924, intron 3 of 14) intron (NM_001001924, intron 3 of 14) -19158 NM_001166393 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 3176 chr8 53042128 53045200 + 0 NA intron (NM_014682, intron 22 of 25) intron (NM_014682, intron 22 of 25) -231918 NM_001286783 115294 Hs.671268 XM_005251145 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 1424 chr1 110452463 110458004 + 0 NA intron (NM_172210, intron 1 of 8) intron (NM_172210, intron 1 of 8) 2000 NM_172211 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 (macrophage) protein-coding 1560 chr11 34910625 34913377 + 0 NA intron (NM_015957, intron 3 of 6) intron (NM_015957, intron 3 of 6) -25676 NM_001135024 8050 Hs.502315 NM_001135024 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDX1|proX pyruvate dehydrogenase complex, component X protein-coding 417 chr15 85497985 85499429 + 0 NA Intergenic Intergenic -25037 NM_001243137 5151 Hs.9333 XM_005254933 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 784 chr20 52522367 52524376 + 0 NA Intergenic AluSz|SINE|Alu -31123 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1762 chr15 37191834 37200584 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -17475 NR_024264 145845 Hs.302693 NR_024264 LOC145845 - uncharacterized LOC145845 ncRNA 260 chr12 31659227 31662523 + 0 NA intron (NM_144973, intron 1 of 20) intron (NM_144973, intron 1 of 20) -81982 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 RP11-820K3.5 DENND5B antisense RNA 1 ncRNA 3080 chr6 136410901 136413282 + 0 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 159358 NM_138419 113115 Hs.121536 NM_001099286 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 2061 chr2 238036135 238038059 + 0 NA Intergenic Intergenic 43013 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 1844 chr16 76979729 76982154 + 0 NA Intergenic Intergenic 78108 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 1530 chr11 63683542 63687070 + 0 NA promoter-TSS (NM_173587) promoter-TSS (NM_173587) -990 NM_173587 283248 Hs.98788 XM_005273932 ENSG00000167771 RCOR2 - REST corepressor 2 protein-coding 2504 chr8 19464281 19467029 + 0 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) -5599 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 762 chr20 13010070 13011665 + 0 NA intron (NM_018327, intron 1 of 11) intron (NM_018327, intron 1 of 11) 21240 NM_018327 55304 Hs.425023 XR_244218 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase, long chain base subunit 3 protein-coding 1144 chr8 11748731 11750185 + 0 NA Intergenic AluSx3|SINE|Alu -23812 NM_147782 1508 Hs.520898 XM_005272367 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 2798 chr13 95738710 95740906 + 0 NA intron (NM_005845, intron 20 of 30) intron (NM_005845, intron 20 of 30) 213879 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 734 chr2 174023906 174025896 + 0 NA intron (NM_016653, intron 2 of 19) intron (NM_016653, intron 2 of 19) 84336 NM_016653 51776 Hs.444451 XM_005246639 ENSG00000091436 ZAK AZK|MLK7|MLT|MLTK|MRK|mlklak|pk sterile alpha motif and leucine zipper containing kinase AZK protein-coding 2952 chr20 10293700 10296414 + 0 NA Intergenic Intergenic -94903 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 1723 chr14 69160390 69163590 + 0 NA Intergenic Intergenic 98641 NM_004926 677 Hs.707091 XM_005268025 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 2621 chr9 81537600 81540898 + 0 NA Intergenic MER89-int|LTR|ERV1 221332 NR_109771 101927450 Hs.738041 XR_242629 ENSG00000260995 RP11-165H23.1 - uncharacterized LOC101927450 ncRNA 2047 chr2 206578485 206580602 + 0 NA intron (NM_201264, intron 2 of 8) intron (NM_201264, intron 2 of 8) 32319 NM_201264 8828 Hs.471200 XM_005246933 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 144 chr10 128993940 128995655 + 0 NA promoter-TSS (NM_001039762) promoter-TSS (NM_001039762) -375 NM_001039762 642938 Hs.613882 XM_005252694 ENSG00000188916 FAM196A C10orf141 family with sequence similarity 196, member A protein-coding 1440 chr1 232284301 232287073 + 0 NA Intergenic Intergenic -331424 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 (non-protein coding) ncRNA 2524 chr8 32101998 32106183 + 0 NA intron (NM_013962, intron 1 of 4) MER31-int|LTR|ERV1 -194172 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 381 chr15 33571162 33572445 + 0 NA Intergenic LTR81A|LTR|Gypsy -31374 NM_001036 6263 Hs.709373 XM_005254587 ENSG00000198838 RYR3 - ryanodine receptor 3 protein-coding 1471 chr10 33297064 33306004 + 0 NA Intergenic Intergenic -54241 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 1814 chr16 10718941 10722028 + 0 NA TTS (NM_144674) TTS (NM_144674) -45945 NM_001424 2013 Hs.531561 XM_005255165 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 906 chr4 5051999 5054576 + 0 NA promoter-TSS (NM_018401) promoter-TSS (NM_018401) -240 NM_018401 55351 Hs.133062 XM_005247980 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 2205 chr3 171659705 171663792 + 0 NA Intergenic MIRb|SINE|MIR -95670 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 1349 chrX 139846473 139847353 + 0 NA intron (NR_104228, intron 3 of 3) CpG 19810 NM_004065 1038 Hs.446675 NM_004065 ENSG00000184258 CDR1 CDR|CDR34|CDR62A cerebellar degeneration-related protein 1, 34kDa protein-coding 2966 chr22 23045253 23047260 + 0 NA Intergenic Intergenic 57474 NM_199127 91227 Hs.632765 XM_005261815 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 177 chr11 34066104 34066926 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -6715 NM_005898 4076 Hs.471818 XM_005252931 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 2213 chr4 40991119 40997453 + 0 NA intron (NM_004307, intron 6 of 17) AluJr|SINE|Alu -135077 NM_001166053 323 Hs.479602 XM_005248094 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding 373 chr15 41418079 41419217 + 0 NA Intergenic L1M4b|LINE|L1 -10204 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 2078 chr20 14824784 14827401 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) 84072 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 NCRNA00186 MACROD2 antisense RNA 1 ncRNA 773 chr20 46069468 46070802 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -60466 NM_001174087 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 1247 chr8 120866694 120868863 + 0 NA intron (NM_024094, intron 1 of 8) intron (NM_024094, intron 1 of 8) 392 NM_024094 79075 Hs.315167 XM_005251065 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 2940 chr2 192186128 192188117 + 0 NA intron (NM_001130158, intron 3 of 30) intron (NM_001130158, intron 3 of 30) 76868 NM_001161819 4430 Hs.439620 XM_005246568 ENSG00000128641 MYO1B myr1 myosin IB protein-coding 22 chr1 3459091 3460083 + 0 NA intron (NM_001409, intron 4 of 36) intron (NM_001409, intron 4 of 36) 17767 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 205 chr11 63856852 63860163 + 0 NA intron (NM_014067, intron 3 of 10) GA-rich|Low_complexity|Low_complexity -12855 NM_013280 23769 Hs.584876 XM_005273861 ENSG00000126500 FLRT1 RP11-21A7A.2 fibronectin leucine rich transmembrane protein 1 protein-coding 3072 chr5 106728966 106732927 + 0 NA intron (NM_001962, intron 2 of 4) AluSz|SINE|Alu 275650 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 1309 chr9 66032540 66036156 + 0 NA Intergenic L1P4b|LINE|L1 -459921 NR_024496 442421 Hs.745371 NR_024496 PTGER4P2-CDK2AP2P2 PTGER4P2 PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene pseudo 1752 chr15 75411078 75415581 + 0 NA Intergenic AluSz|SINE|Alu -80892 NM_015492 56905 Hs.17936 XM_005254551 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 3213 chr8 124644224 124646193 + 0 NA Intergenic Intergenic 19982 NM_001081675 340359 Hs.450252 XM_005250901 ENSG00000175946 KLHL38 C8ORFK36 kelch-like family member 38 protein-coding 1576 chr11 63769519 63776049 + 0 NA intron (NM_014067, intron 4 of 10) AluSg|SINE|Alu 19459 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU domain, ubiquitin aldehyde binding 1 protein-coding 2874 chr17 61512139 61513569 + 0 NA intron (NM_001017916, intron 4 of 5) intron (NM_001017916, intron 4 of 5) 5353 NM_001017917 1534 Hs.355264 XM_005257090 ENSG00000008283 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 2681 chr1 38494587 38496692 + 0 NA Intergenic Intergenic 16811 NM_002699 5453 Hs.1837 NM_002699 ENSG00000185668 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 1622 chr12 116957906 116978524 + 0 NA Intergenic Intergenic -3012 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 1260 chr8 128943018 128945044 + 0 NA intron (NR_003367, intron 1 of 7) intron (NR_003367, intron 1 of 7) 16938 NR_103558 641384 Hs.629674 NM_001037234 TMEM75 - transmembrane protein 75 ncRNA 874 chr3 81492229 81493816 + 0 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 317928 NM_000158 2632 Hs.436062 XM_005264728 ENSG00000114480 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 975 chr5 78015799 78018600 + 0 NA Intergenic Intergenic -72551 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 493 chr16 70456052 70458151 + 0 NA intron (NM_006927, intron 1 of 6) intron (NM_006927, intron 1 of 6) 15890 NM_006927 6483 Hs.368611 XM_005256114 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 1708 chr14 35054916 35061097 + 0 NA intron (NM_152233, intron 8 of 13) L1ME1|LINE|L1 41309 NM_021249 58533 Hs.356647 XM_005267957 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 2220 chr4 114897255 114901980 + 0 NA exon (NM_024590, exon 1 of 2) exon (NM_024590, exon 1 of 2) 1261 NM_024590 79642 Hs.712042 XM_005263211 ENSG00000180801 ARSJ - arylsulfatase family, member J protein-coding 1436 chr1 202591680 202593279 + 0 NA intron (NM_177402, intron 1 of 8) intron (NM_177402, intron 1 of 8) 20102 NM_001136504 127833 Hs.25422 NM_001136504 ENSG00000143858 SYT2 SytII synaptotagmin II protein-coding 1911 chr18 24056266 24069812 + 0 NA intron (NM_001258221, intron 2 of 4) intron (NM_001258221, intron 2 of 4) 65461 NM_001142730 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 2856 chr16 87239747 87242064 + 0 NA Intergenic L1ME1|LINE|L1 85153 NR_104667 101928682 Hs.149004 XR_243495 RP11-178L8.5 - uncharacterized LOC101928682 ncRNA 2528 chr8 38305893 38310232 + 0 NA intron (NM_001174064, intron 2 of 18) intron (NM_001174064, intron 2 of 18) 17301 NM_001174067 2260 Hs.264887 XM_005273449 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 1591 chr11 69233459 69237550 + 0 NA Intergenic Intergenic 173882 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 1677 chr13 45286860 45289994 + 0 NA Intergenic Intergenic 95339 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330|RP11-96M12.1 long intergenic non-protein coding RNA 330 ncRNA 2199 chr3 149823537 149826458 + 0 NA Intergenic Intergenic -131309 NR_110168 101927992 Hs.534682 XR_241591 ENSG00000244541 RP11-167H9.6 - uncharacterized LOC101927992 ncRNA 2174 chr3 32442556 32444430 + 0 NA intron (NM_181472, intron 1 of 3) intron (NM_181472, intron 1 of 3) 10330 NM_181472 112616 Hs.440494 XM_005264841 ENSG00000153551 CMTM7 CKLFSF7 CKLF-like MARVEL transmembrane domain containing 7 protein-coding 1320 chr9 131673083 131675895 + 0 NA intron (NM_019594, intron 3 of 3) FLAM_C|SINE|Alu -8685 NM_174933 254295 Hs.709447 XM_005251874 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 1026 chr6 27793588 27795356 + 0 NA Intergenic Intergenic 2569 NM_021968 8363 Hs.278483 NM_021968 ENSG00000197238 HIST1H4J H4/e|H4F2iv|H4FE|dJ160A22.2 histone cluster 1, H4j protein-coding 3002 chr3 112248031 112250872 + 0 NA Intergenic L1MD3|LINE|L1 -31043 NM_181780 151888 Hs.445162 XM_005247136 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 2752 chr11 42087336 42088577 + 0 NA Intergenic LTR1|LTR|ERV1 187284 NR_038309 100507205 Hs.99310 XR_242773 LOC100507205 - uncharacterized LOC100507205 ncRNA 1390 chr1 9033401 9035260 + 0 NA intron (NM_001270501, intron 6 of 6) intron (NM_001270501, intron 6 of 6) 28437 NM_001270502 765 Hs.100322 NM_001215 ENSG00000131686 CA6 CA-VI|GUSTIN carbonic anhydrase VI protein-coding 3113 chr7 37447650 37449360 + 0 NA intron (NM_001206480, intron 1 of 21) L1MB2|LINE|L1 40050 NM_014800 9844 Hs.656638 XM_005249919 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 1993 chr2 165376215 165383090 + 0 NA intron (NM_004490, intron 5 of 13) MLT1G3|LTR|ERVL-MaLR 98708 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 1893 chr17 59412095 59416757 + 0 NA intron (NM_017679, intron 22 of 23) AluSz|SINE|Alu -62831 NM_005994 6909 Hs.531085 NM_005994 ENSG00000121068 TBX2 - T-box 2 protein-coding 1469 chr10 30982483 30992674 + 0 NA intron (NR_036438, intron 4 of 9) intron (NR_036438, intron 4 of 9) 6375 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 1499 chr10 126066777 126070455 + 0 NA Intergenic C-rich|Low_complexity|Low_complexity 38929 NM_000274 4942 Hs.523332 XM_005269868 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 1646 chr12 63033229 63035671 + 0 NA Intergenic AluJo|SINE|Alu 36984 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 3010 chr3 177526353 177529913 + 0 NA Intergenic Intergenic 368424 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 RP11-335L9.1 long intergenic non-protein coding RNA 578 ncRNA 400 chr15 59396379 59399329 + 0 NA intron (NM_004701, intron 1 of 8) intron (NM_004701, intron 1 of 8) 570 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 534 chr17 39006112 39007829 + 0 NA Intergenic Intergenic 16492 NM_000223 3859 Hs.66739 NM_000223 ENSG00000187242 KRT12 K12 keratin 12 protein-coding 746 chr2 235149888 235155824 + 0 NA Intergenic MER51B|LTR|ERV1 193510 NM_006944 6694 Hs.444488 XM_005246102 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 919 chr4 75584047 75587367 + 0 NA Intergenic Intergenic 105078 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 744 chr2 231988045 231990482 + 0 NA intron (NM_000867, intron 1 of 3) intron (NM_000867, intron 1 of 3) 561 NM_000867 3357 Hs.421649 XM_005246520 ENSG00000135914 HTR2B 5-HT(2B)|5-HT2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled protein-coding 1268 chr8 129179178 129181787 + 0 NA Intergenic MIRb|SINE|MIR 18120 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 633 chr19 11264722 11267471 + 0 NA intron (NM_182513, intron 1 of 4) MIR|SINE|MIR 388 NM_182513 147841 Hs.381225 XM_005259753 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 1372 chr1 110324820 110336805 + 0 NA Intergenic Intergenic -24168 NM_024526 79574 Hs.485352 XM_005271193 ENSG00000198758 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 151 chr11 309948 311834 + 0 NA Intergenic CpG 2784 NM_006435 10581 Hs.709321 XM_005252750 ENSG00000185201 IFITM2 1-8D|DSPA2c interferon induced transmembrane protein 2 protein-coding 1977 chr19 51896668 51899266 + 0 NA Intergenic Intergenic -4139 NM_001193623 147646 Hs.148344 NM_001193623 ENSG00000262874 C19orf84 - chromosome 19 open reading frame 84 protein-coding 2023 chr2 120188142 120190215 + 0 NA promoter-TSS (NM_183240) promoter-TSS (NM_183240) -268 NM_183240 140738 Hs.26216 XM_005263597 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 1669 chr12 120714071 120717297 + 0 NA Intergenic SVA_A|Other|Other -12110 NM_001243756 5829 Hs.446336 XM_005253910 ENSG00000089159 PXN - paxillin protein-coding 1825 chr16 18956721 18958422 + 0 NA Intergenic Intergenic -19845 NM_015092 23049 Hs.460179 XM_005255182 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1 phosphatidylinositol 3-kinase-related kinase protein-coding 1285 chr8 142237797 142239146 + 0 NA 5' UTR (NM_001286648, exon 1 of 7) 5' UTR (NM_001286648, exon 1 of 7) 202 NM_001080431 57210 Hs.372492 XM_005251001 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 1952 chr19 2533244 2536926 + 0 NA intron (NM_052847, intron 3 of 4) intron (NM_052847, intron 3 of 4) 58962 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 287 chr12 76374369 76375629 + 0 NA Intergenic MIRb|SINE|MIR 50557 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 475 chr16 46654096 46655947 + 0 NA intron (NM_024745, intron 1 of 12) CpG 290 NM_024745 79801 Hs.123253 NM_024745 ENSG00000171241 SHCBP1 PAL SHC SH2-domain binding protein 1 protein-coding 2595 chr8 142236387 142240848 + 0 NA promoter-TSS (NM_001286648) promoter-TSS (NM_001286648) 56 NM_001080431 57210 Hs.372492 XM_005251001 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 932 chr4 126649646 126651802 + 0 NA Intergenic Intergenic 222310 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 1549 chr11 10412758 10418266 + 0 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) -56356 NM_001172431 272 Hs.501890 XM_005252867 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 1959 chr19 10922145 10924965 + 0 NA intron (NM_001005360, intron 15 of 20) intron (NM_001005360, intron 15 of 20) 4617 NR_029586 406976 NR_029586 ENSG00000207752 MIR199A1 MIR-199-s|MIRN199A1 microRNA 199a-1 ncRNA 515 chr17 15811205 15814618 + 0 NA Intergenic Intergenic -35320 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 1525 chr11 48068499 48071656 + 0 NA intron (NM_001098503, intron 1 of 8) AluSz|SINE|Alu 67967 NM_002843 5795 Hs.318547 XM_005253038 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 2545 chr8 67088098 67090134 + 0 NA 3' UTR (NM_000756, exon 2 of 2) 3' UTR (NM_000756, exon 2 of 2) 1730 NM_000756 1392 Hs.75294 NM_000756 ENSG00000147571 CRH CRF corticotropin releasing hormone protein-coding 1242 chr8 102619231 102620949 + 0 NA intron (NM_024915, intron 8 of 15) intron (NM_024915, intron 8 of 15) 115422 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|TFCP2L3 grainyhead-like 2 (Drosophila) protein-coding 2761 chr11 69149695 69153266 + 0 NA Intergenic AluJb|SINE|Alu 89858 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 2996 chr3 78923903 78925334 + 0 NA intron (NM_133631, intron 2 of 28) intron (NM_133631, intron 2 of 28) 143991 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 138 chr10 114417617 114420157 + 0 NA intron (NM_145206, intron 5 of 7) intron (NM_145206, intron 5 of 7) 24958 NR_036177 100422909 NR_036177 MIR4295 - microRNA 4295 ncRNA 1107 chr7 116411708 116413636 + 0 NA intron (NM_001127500, intron 14 of 20) intron (NM_001127500, intron 14 of 20) -89891 NM_006136 830 Hs.446123 XR_242266 CAPZA2 CAPPA2|CAPZ capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 1208 chr8 41648704 41650860 + 0 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 5358 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 1874 chr17 21001311 21003852 + 0 NA Intergenic Intergenic -27660 NM_015510 25979 Hs.386989 XM_005256595 ENSG00000109016 DHRS7B SDR32C1 dehydrogenase/reductase (SDR family) member 7B protein-coding 1803 chr16 69087613 69100662 + 0 NA intron (NM_024562, intron 17 of 17) AluJb|SINE|Alu -45330 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 724 chr2 161608945 161609808 + 0 NA Intergenic Intergenic -259058 NM_002897 5937 Hs.708357 XM_005246737 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif, single stranded interacting protein 1 protein-coding 1201 chr8 32198726 32199405 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -99197 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 519 chr17 15856924 15858406 + 0 NA intron (NM_000676, intron 1 of 1) intron (NM_000676, intron 1 of 1) 9434 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 1195 chr8 32102386 32105881 + 0 NA intron (NM_013962, intron 1 of 4) MER31-int|LTR|ERV1 -194129 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 17 chr1 1099831 1101149 + 0 NA Intergenic CpG -1994 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B microRNA 200b ncRNA 2451 chr8 25074805 25088623 + 0 NA intron (NM_024940, intron 1 of 51) AluSz|SINE|Alu 39427 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1327 chr9 132115061 132115819 + 0 NA Intergenic Intergenic 32145 NM_001012715 414318 Hs.449434 NM_001012715 C9orf106 bA65J3.5 chromosome 9 open reading frame 106 protein-coding 2192 chr3 128134228 128137834 + 0 NA Intergenic L2a|LINE|L2 -46406 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 RP11-475N22.2 DNAJB8 antisense RNA 1 ncRNA 1274 chr8 134196549 134197859 + 0 NA Intergenic Intergenic -6078 NM_003882 8840 Hs.492974 NM_001204869 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 2667 chrX 140498283 140502739 + 0 NA Intergenic Intergenic -90332 NR_037183 619455 Hs.590784 NR_037183 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 (non-protein coding) ncRNA 110 chr10 33443595 33446843 + 0 NA Intergenic Intergenic 178614 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 333 chr14 102758446 102762712 + 0 NA intron (NM_001272011, intron 1 of 10) AluY|SINE|Alu 10958 NM_001272011 5891 Hs.104119 NM_001272011 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1 MOK protein kinase protein-coding 1995 chr2 165476605 165479454 + 0 NA 5' UTR (NM_004490, exon 1 of 14) 5' UTR (NM_004490, exon 1 of 14) 331 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 2356 chr6 45386670 45393166 + 0 NA promoter-TSS (NM_001278478) promoter-TSS (NM_001278478) -396 NM_001278478 860 Hs.535845 NM_001015051 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 2210 chr3 185539998 185544134 + 0 NA intron (NM_001007225, intron 1 of 14) CpG 761 NM_006548 10644 Hs.35354 XM_005247073 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2|p62 insulin-like growth factor 2 mRNA binding protein 2 protein-coding 2658 chrX 46057407 46063289 + 0 NA Intergenic L1MC4a|LINE|L1 -246276 NM_001129899 55634 Hs.632800 XM_005272625 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 2780 chr12 18395056 18396198 + 0 NA Intergenic Intergenic -18847 NM_001288774 5288 Hs.22500 XM_005253393 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma protein-coding 646 chr19 38548266 38550738 + 0 NA intron (NM_015073, intron 2 of 21) AluSq|SINE|Alu 151634 NM_015073 23094 Hs.655502 XM_005258671 ENSG00000105738 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 446 chr16 8964197 8965662 + 0 NA Intergenic L1MB7|LINE|L1 -2060 NM_001278260 23589 Hs.632184 XM_005255228 ENSG00000153048 CARHSP1 CRHSP-24|CSDC1 calcium regulated heat stable protein 1, 24kDa protein-coding 2181 chr3 48227484 48230891 + 0 NA intron (NM_201567, intron 1 of 13) CpG 614 NM_001789 993 Hs.437705 XM_005265629 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 2229 chr4 7965845 7967894 + 0 NA TTS (NM_001130086) TTS (NM_001130086) -25216 NM_001134647 60312 Hs.529369 XM_005247991 ENSG00000196526 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 1220 chr8 62690419 62697090 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 66407 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 1582 chr11 66789357 66793410 + 0 NA intron (NM_177963, intron 1 of 7) CpG 567 NM_177963 91683 Hs.287636 NM_001177880 SYT12 SYT11|sytXII synaptotagmin XII protein-coding 2842 chr16 12500175 12503068 + 0 NA intron (NM_032167, intron 18 of 20) L4|LINE|RTE -312557 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 1599 chr11 86626618 86629044 + 0 NA Intergenic Intergenic 38609 NM_012193 8322 Hs.591968 XM_005274341 ENSG00000174804 FZD4 CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 frizzled family receptor 4 protein-coding 3013 chr3 189717681 189719889 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 120123 NM_018192 55214 Hs.374191 NM_001134418 ENSG00000090530 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 2306 chr5 75697829 75701009 + 0 NA intron (NM_006633, intron 1 of 35) CpG 339 NM_006633 10788 Hs.291030 XM_005248409 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 1149 chr8 17637644 17639895 + 0 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 19657 NM_001001924 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2900 chr19 4573539 4577737 + 0 NA Intergenic Intergenic -15867 NM_032108 10501 Hs.465642 NM_032108 ENSG00000167680 SEMA6B SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B protein-coding 2652 chrX 150008753 150022812 + 0 NA intron (NM_031462, intron 1 of 10) L1M4|LINE|L1 51507 NM_001184808 83692 Hs.522805 XM_005274757 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 2337 chr6 26181194 26200954 + 0 NA Intergenic AluY|SINE|Alu -1770 NM_003539 8360 Hs.248179 NM_003539 ENSG00000188987 HIST1H4D H4/b|H4FB|dJ221C16.9 histone cluster 1, H4d protein-coding 2603 chr9 19167371 19175948 + 0 NA Intergenic AluSx|SINE|Alu -44055 NM_001122 123 Hs.3416 NM_001122 ENSG00000147872 PLIN2 ADFP|ADRP perilipin 2 protein-coding 2283 chr5 106790237 106793686 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 214635 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 2243 chr4 75607386 75609184 + 0 NA Intergenic L1MA2|LINE|L1 111597 NM_001729 685 Hs.710156 XM_005263190 BTC - betacellulin protein-coding 2407 chr7 47210223 47214796 + 0 NA Intergenic Intergenic 409233 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 2695 chr1 114574519 114576589 + 0 NA Intergenic Intergenic 53541 NM_001286353 56944 Hs.9315 XM_005271049 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin-like 3 protein-coding 1087 chr7 73356223 73357151 + 0 NA Intergenic L1M4b|LINE|L1 81198 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 1288 chr8 144360383 144361972 + 0 NA Intergenic CpG 11570 NM_138465 2738 Hs.400533 XM_005250868 ENSG00000250571 GLI4 HKR4|ZNF928 GLI family zinc finger 4 protein-coding 810 chr22 24577292 24577905 + 0 NA intron (NM_019601, intron 1 of 14) intron (NM_019601, intron 1 of 14) 154 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 1238 chr8 98797777 98799134 + 0 NA intron (NM_018407, intron 1 of 6) intron (NM_018407, intron 1 of 6) 10646 NM_018407 55353 Hs.492314 NM_018407 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 33 chr1 24866341 24869200 + 0 NA intron (NR_109781, intron 2 of 2) intron (NR_109781, intron 2 of 2) 14745 NR_109781 100506985 Hs.607088 XR_108374 LOC100506985 - uncharacterized LOC100506985 ncRNA 1587 chr11 68880665 68885501 + 0 NA Intergenic UCON31|Unknown|Unknown 55947 NR_104161 338694 Hs.564235 XR_247248 ENSG00000261070 RP11-554A11.8 - uncharacterized LOC338694 ncRNA 2866 chr17 18779577 18781518 + 0 NA intron (NM_002767, intron 5 of 11) L2a|LINE|L2 11765 NM_001243940 5636 Hs.632236 XM_005256724 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase-associated protein 2 protein-coding 1559 chr11 34705349 34708255 + 0 NA Intergenic Intergenic 52791 NM_001206616 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 7 chr1 27316371 27329283 + 0 NA intron (NM_001013642, intron 1 of 1) intron (NM_001013642, intron 1 of 1) 2632 NM_001013642 388610 Hs.355747 XM_005245867 ENSG00000253368 TRNP1 C1orf225|TNRP TMF1-regulated nuclear protein 1 protein-coding 1793 chr16 15544183 15550675 + 0 NA intron (NM_033201, intron 1 of 5) AluJo|SINE|Alu 19104 NM_033201 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 227 chr11 70005192 70007295 + 0 NA intron (NM_018043, intron 16 of 25) intron (NM_018043, intron 16 of 25) -43026 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD MORT1 Fas (TNFRSF6)-associated via death domain protein-coding 1701 chr14 24452811 24459859 + 0 NA intron (NM_001193637, intron 1 of 5) intron (NM_001193637, intron 1 of 5) -1692 NM_198083 317749 Hs.743442 NM_001193635 ENSG00000187630 DHRS4L2 SDR25C3 dehydrogenase/reductase (SDR family) member 4 like 2 protein-coding 1860 chr17 39174061 39179090 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 6879 NM_031957 83895 Hs.534499 NM_031957 ENSG00000221852 KRTAP1-5 KAP1.5|KRTAP1.5 keratin associated protein 1-5 protein-coding 2443 chr8 17465074 17470265 + 0 NA intron (NM_006207, intron 3 of 6) intron (NM_006207, intron 3 of 6) 33727 NM_006207 5157 Hs.458573 XM_005273528 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet-derived growth factor receptor-like protein-coding 1937 chr19 13253264 13255509 + 0 NA TTS (NM_001271610) TTS (NM_001271610) 6802 NM_001271610 8677 Hs.43812 NM_001271609 ENSG00000104915 STX10 SYN10|hsyn10 syntaxin 10 protein-coding 2013 chr2 42085894 42089920 + 0 NA Intergenic Zaphod|DNA|hAT-Tip100 -16788 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 AC104654.1 - uncharacterized LOC388942 ncRNA 255 chr12 14410063 14411545 + 0 NA Intergenic Intergenic -107762 NM_018179 55729 Hs.591151 XM_005253423 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 264 chr12 49318134 49319588 + 0 NA promoter-TSS (NM_001143781) promoter-TSS (NM_001143781) -197 NM_001143781 51303 Hs.655103 XM_005268950 ENSG00000134285 FKBP11 FKBP19 FK506 binding protein 11, 19 kDa protein-coding 806 chr22 46874575 46876969 + 0 NA intron (NM_014246, intron 1 of 34) intron (NM_014246, intron 1 of 34) 57295 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 CDHF9|FMI2|HFMI2|ME2 cadherin, EGF LAG seven-pass G-type receptor 1 protein-coding 2230 chr4 8226901 8231846 + 0 NA exon (NM_018986, exon 12 of 18) exon (NM_018986, exon 12 of 18) 28313 NM_018986 54436 Hs.479116 XM_005247974 ENSG00000125089 SH3TC1 - SH3 domain and tetratricopeptide repeats 1 protein-coding 1885 chr17 41621151 41624842 + 0 NA 5' UTR (NM_001079675, exon 2 of 13) 5' UTR (NM_001079675, exon 2 of 13) 309 NM_001986 2118 Hs.434059 XM_005257142 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ets variant 4 protein-coding 182 chr11 34997968 35000550 + 0 NA intron (NM_001135024, intron 7 of 10) Charlie7a|DNA|hAT-Charlie 35875 NR_039836 100616437 NR_039836 MIR1343 - microRNA 1343 ncRNA 2905 chr19 11162496 11164832 + 0 NA intron (NM_001128848, intron 28 of 32) intron (NM_001128848, intron 28 of 32) -36374 NM_001195799 3949 Hs.713981 XM_005259909 ENSG00000130164 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 1817 chr16 14519230 14525183 + 0 NA Intergenic Intergenic 119064 NR_029854 100126355 NR_029854 ENSG00000199130 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a microRNA 365a ncRNA 2707 chr1 199776714 199778142 + 0 NA Intergenic Intergenic -219302 NM_003822 2494 Hs.33446 XM_005245061 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 556 chr17 57874101 57875398 + 0 NA intron (NM_030938, intron 7 of 11) L1ME3|LINE|L1 -43878 NR_029493 406991 Hs.444569 NR_029493 ENSG00000199004 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 717 chr2 121101801 121103649 + 0 NA promoter-TSS (NM_002193) promoter-TSS (NM_002193) -994 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin, beta B protein-coding 2817 chr14 93090755 93093053 + 0 NA intron (NM_024832, intron 4 of 9) HERVI-int|LTR|ERV1 111779 NM_024832 79890 Hs.326822 XM_005268074 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 815 chr22 24641873 24642654 + 0 NA Intergenic Intergenic -1153 NM_001099782 2687 Hs.437156 XM_005261557 ENSG00000099998 GGT5 GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 671 chr19 56182933 56183585 + 0 NA intron (NM_001012478, intron 11 of 11) AluSg|SINE|Alu -3302 NM_013333 29924 Hs.279953 XM_005258829 ENSG00000063245 EPN1 - epsin 1 protein-coding 1511 chr11 47954453 47972601 + 0 NA Intergenic MIR3|SINE|MIR -38583 NM_001098503 5795 Hs.318547 XM_005253038 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 2249 chr4 95854339 95858796 + 0 NA intron (NM_001203, intron 2 of 12) L2a|LINE|L2 -60816 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 167 chr11 9882359 9883867 + 0 NA intron (NM_030962, intron 17 of 39) AluSx1|SINE|Alu -102033 NR_033972 440028 Hs.677541 XR_242804 ENSG00000245522 RP11-540A21.2 - uncharacterized LOC440028 ncRNA 2423 chr7 116098465 116102918 + 0 NA Intergenic HERVH-int|LTR|ERV1 -38964 NM_001206747 858 Hs.603096 NM_001206747 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 692 chr2 29032861 29034062 + 0 NA promoter-TSS (NM_182756) promoter-TSS (NM_182756) -239 NM_182756 245711 Hs.511956 XM_005264239 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 1605 chr11 114173369 114176232 + 0 NA intron (NM_006169, intron 2 of 2) intron (NM_006169, intron 2 of 2) 8265 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 663 chr19 51896817 51898517 + 0 NA Intergenic CpG -3839 NM_001193623 147646 Hs.148344 NM_001193623 ENSG00000262874 C19orf84 - chromosome 19 open reading frame 84 protein-coding 2431 chr7 141796511 141800884 + 0 NA intron (NM_004668, intron 43 of 47) intron (NM_004668, intron 43 of 47) -12852 NR_003715 93432 Hs.647098 NM_001008748 ENSG00000257743 LOC93432 - maltase-glucoamylase (alpha-glucosidase) pseudogene pseudo 1907 chr17 79987829 79990688 + 0 NA promoter-TSS (NM_005052) promoter-TSS (NM_005052) -274 NM_005052 5881 Hs.45002 XM_005256390 ENSG00000169750 RAC3 - ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) protein-coding 854 chr3 24197206 24199070 + 0 NA intron (NM_001128177, intron 5 of 10) intron (NM_001128177, intron 5 of 10) -53400 NR_026834 152024 Hs.385606 XR_245096 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 1945 chr19 54489803 54495944 + 0 NA 3' UTR (NM_031895, exon 4 of 4) 3' UTR (NM_031895, exon 4 of 4) -1530 NR_102308 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium channel, voltage-dependent, gamma subunit 6 protein-coding 3120 chr7 76077165 76080686 + 0 NA Intergenic MER34B-int|LTR|ERV1 -12047 NM_001102594 113878 Hs.187058 XM_005250131 ENSG00000091073 DTX2 RNF58 deltex homolog 2 (Drosophila) protein-coding 969 chr5 73059980 73061581 + 0 NA intron (NM_001080479, intron 4 of 36) intron (NM_001080479, intron 4 of 36) -48563 NM_001244364 64283 Hs.482521 XM_005248568 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 1174 chr8 25054585 25055221 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 12616 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1946 chr19 54508930 54514471 + 0 NA intron (NM_145814, intron 3 of 3) intron (NM_145814, intron 3 of 3) 16158 NM_145814 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium channel, voltage-dependent, gamma subunit 6 protein-coding 510 chr17 1673009 1674136 + 0 NA intron (NM_002615, intron 3 of 7) intron (NM_002615, intron 3 of 7) 8313 NM_002615 5176 Hs.532768 NM_002615 ENSG00000132386 SERPINF1 EPC-1|OI12|OI6|PEDF serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 protein-coding 3020 chr4 87751844 87753477 + 0 NA intron (NM_197965, intron 3 of 5) intron (NM_197965, intron 3 of 5) 17756 NM_197965 345274 Hs.452996 XM_005262980 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 (sodium/bile acid cotransporter), member 6 protein-coding 393 chr15 45937631 45939102 + 0 NA intron (NM_021199, intron 1 of 9) intron (NM_021199, intron 1 of 9) 11428 NM_021199 58472 Hs.743355 XM_005254571 ENSG00000137767 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 2276 chr5 14236636 14238898 + 0 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 93938 NM_007118 7204 Hs.130031 XR_241714 ENSG00000038382 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 1501 chr10 128109317 128113563 + 0 NA promoter-TSS (NR_073453) promoter-TSS (NR_073453) -992 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 RP11-422P15.3 long intergenic non-protein coding RNA 601 ncRNA 658 chr19 48899942 48902317 + 0 NA intron (NM_000836, intron 1 of 12) C-rich|Low_complexity|Low_complexity 2997 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|GluN2D|NMDAR2D|NR2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D protein-coding 274 chr12 63131704 63132801 + 0 NA intron (NM_020700, intron 4 of 9) intron (NM_020700, intron 4 of 9) 134786 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 549 chr17 46948474 46950194 + 0 NA Intergenic Intergenic -20814 NM_001002027 516 Hs.80986 NM_001002027 ENSG00000159199 ATP5G1 ATP5A|ATP5G ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) protein-coding 877 chr3 106935618 106936197 + 0 NA intron (NR_028303, intron 1 of 3) Charlie17a|DNA|hAT-Charlie 23578 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 RP11-280F2.2 long intergenic non-protein coding RNA 882 ncRNA 1508 chr10 134262533 134263750 + 0 NA Intergenic Intergenic 4427 NM_173541 170393 Hs.375059 NM_173541 C10orf91 RP11-432J24.4|bA432J24.4 chromosome 10 open reading frame 91 protein-coding 3034 chr4 75532365 75534852 + 0 NA Intergenic Intergenic 52979 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 1128 chr8 127582170 127585316 + 0 NA Intergenic Intergenic -13032 NM_174911 157638 Hs.741352 XM_005250798 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 1771 chr15 63178206 63181433 + 0 NA Intergenic Intergenic 63663 NR_029709 406965 NR_029709 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190 microRNA 190a ncRNA 2891 chr19 4716519 4718848 + 0 NA intron (NM_139159, intron 3 of 21) intron (NM_139159, intron 3 of 21) 6172 NM_139159 91039 Hs.515081 XM_005259673 ENSG00000142002 DPP9 DP9|DPLP9|DPRP-2|DPRP2 dipeptidyl-peptidase 9 protein-coding 946 chr5 10511855 10512910 + 0 NA Intergenic Intergenic -9542 NR_104606 101929412 Hs.508287 XR_241739 ENSG00000249396 RP11-1C1.4 - uncharacterized LOC101929412 ncRNA 1724 chr14 93065327 93068809 + 0 NA intron (NM_024832, intron 3 of 9) intron (NM_024832, intron 3 of 9) 86943 NM_024832 79890 Hs.326822 XM_005268074 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 1520 chr11 12201941 12206659 + 0 NA intron (NM_001282663, intron 3 of 27) intron (NM_001282663, intron 3 of 27) 19070 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA mir-6124 ncRNA 2644 chr9 139419986 139426083 + 0 NA intron (NM_017617, intron 2 of 33) intron (NM_017617, intron 2 of 33) -8956 NR_039820 100616242 NR_039820 MIR4673 - microRNA 4673 ncRNA 2148 chr3 23788977 23791786 + 0 NA Intergenic Intergenic -57003 NM_182666 7324 Hs.164853 XM_005265431 ENSG00000170142 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 250 chr12 76117987 76120117 + 0 NA Intergenic Intergenic -213634 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 303 chr12 111850993 111852873 + 0 NA intron (NM_005475, intron 1 of 7) intron (NM_005475, intron 1 of 7) 8181 NM_005475 10019 Hs.506784 XM_005253818 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 1361 chr1 90307801 90310812 + 0 NA 5' UTR (NM_001134479, exon 2 of 3) 5' UTR (NM_001134479, exon 2 of 3) 21826 NM_018103 55144 Hs.482087 XM_005270991 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 614 chr19 54492901 54495718 + 0 NA promoter-TSS (NR_102308) promoter-TSS (NR_102308) -94 NR_102308 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium channel, voltage-dependent, gamma subunit 6 protein-coding 2963 chr22 33914182 33916847 + 0 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -82859 NR_039921 100616295 NR_039921 MIR4764 - microRNA 4764 ncRNA 1765 chr15 53824119 53833674 + 0 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) 4153 NR_102336 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 3155 chr8 19467345 19470097 + 0 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) -8665 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 2959 chr21 38229944 38232466 + 0 NA intron (NM_001242784, intron 7 of 11) intron (NM_001242784, intron 7 of 11) 107751 NM_001242784 3141 Hs.732538 XM_005260953 ENSG00000159267 HLCS HCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding 130 chr10 62748933 62749997 + 0 NA intron (NR_024555, intron 1 of 11) intron (NR_024555, intron 1 of 11) 11271 NR_024554 9886 Hs.737374 NM_001242359 ENSG00000072422 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 53 chr1 98510225 98511946 + 0 NA promoter-TSS (NR_039604) promoter-TSS (NR_039604) -178 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 1373 chr1 114521087 114526706 + 0 NA exon (NM_001286353, exon 3 of 3) exon (NM_001286353, exon 3 of 3) 1883 NM_001286353 56944 Hs.9315 XM_005271049 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin-like 3 protein-coding 2925 chr2 44750537 44752817 + 0 NA intron (NM_024766, intron 3 of 10) CT-rich|Low_complexity|Low_complexity 24982 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 1465 chr10 13818534 13820734 + 0 NA intron (NM_018027, intron 6 of 24) intron (NM_018027, intron 6 of 24) 190695 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 2990 chr3 65015951 65017440 + 0 NA Intergenic L2b|LINE|L2 311012 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 1302 chr9 41003985 41005046 + 0 NA Intergenic L1P4b|LINE|L1 -212403 NM_033160 26149 Hs.522147 XM_005272515 ENSG00000196409 ZNF658 - zinc finger protein 658 protein-coding 2239 chr4 74894092 74906171 + 0 NA Intergenic L1MEc|LINE|L1 4359 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 chemokine (C-X-C motif) ligand 3 protein-coding 1397 chr1 12584492 12587277 + 0 NA Intergenic Intergenic 18584 NR_003022 677882 Hs.658450 NR_003022 SNORA59B ACA59 small nucleolar RNA, H/ACA box 59B snoRNA 941 chr5 39092179 39093841 + 0 NA Intergenic MER68|LTR|ERVL -18500 NM_152756 253260 Hs.407926 XM_005248277 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR, complex 2 protein-coding 3029 chr4 34182196 34184829 + 0 NA Intergenic Intergenic 2062467 NM_015230 116984 Hs.479451 XM_005262638 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 583 chr17 80058706 80061819 + 0 NA intron (NM_198082, intron 16 of 16) intron (NM_198082, intron 16 of 16) -4156 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 2392 chr7 2902434 2904657 + 0 NA Intergenic LTR78B|LTR|ERV1 -19586 NM_007353 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 1879 chr17 37122882 37124818 + 0 NA promoter-TSS (NM_001008777) promoter-TSS (NM_001008777) -195 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 1824 chr16 16293104 16297750 + 0 NA intron (NM_001171, intron 9 of 30) L2b|LINE|L2 21901 NM_001171 368 Hs.442182 XM_005255310 ENSG00000091262 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 2917 chr2 228261567 228265110 + 0 NA Intergenic Intergenic -19316 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 1869 chr17 76345942 76357701 + 0 NA Intergenic Intergenic 4339 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 3190 chr8 89250315 89253086 + 0 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 88017 NM_005941 4325 Hs.546267 XM_005250921 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 2342 chr6 154729137 154737280 + 0 NA intron (NM_173515, intron 10 of 12) intron (NM_173515, intron 10 of 12) -55308 NM_001130700 26034 Hs.146100 XM_005266919 ENSG00000074706 IPCEF1 PIP3-E|RP3-402L9.2 interaction protein for cytohesin exchange factors 1 protein-coding 591 chr18 12636689 12638672 + 0 NA intron (NM_020148, intron 1 of 15) intron (NM_020148, intron 1 of 15) 19051 NM_001128627 56907 Hs.515283 XM_005258121 ENSG00000134278 SPIRE1 Spir-1 spire-type actin nucleation factor 1 protein-coding 2304 chr5 65493248 65494951 + 0 NA Intergenic L1M1|LINE|L1 53436 NM_139168 140890 Hs.49367 XM_005248439 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamine/lysine-rich protein 1 protein-coding 832 chr22 44319115 44320423 + 0 NA 5' UTR (NM_025225, exon 1 of 9) 5' UTR (NM_025225, exon 1 of 9) 150 NM_025225 80339 Hs.654800 XM_005261754 ENSG00000100344 PNPLA3 ADPN|C22orf20|iPLA(2)epsilon patatin-like phospholipase domain containing 3 protein-coding 2804 chr13 111609174 111610753 + 0 NA Intergenic LTR7C|LTR|ERV1 -42509 NM_001286721 55608 Hs.525163 XM_005254064 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 2341 chr6 151401058 151406145 + 0 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) -157533 NM_005100 9590 Hs.371240 XM_005267233 ENSG00000131016 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 2135 chr22 43081699 43086187 + 0 NA Intergenic Intergenic 32933 NM_017436 53947 Hs.105956 XM_005261643 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase protein-coding 828 chr22 42341032 42343676 + 0 NA intron (NM_001002876, intron 2 of 4) intron (NM_001002876, intron 2 of 4) 794 NM_001002876 79019 Hs.208912 XM_005261736 ENSG00000100162 CENPM C22orf18|CENP-M|PANE1|bK250D10.2 centromere protein M protein-coding 276 chr12 63185229 63190313 + 0 NA intron (NM_020700, intron 3 of 9) intron (NM_020700, intron 3 of 9) 140894 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 102 chr10 30988755 30991613 + 0 NA intron (NR_036438, intron 5 of 9) intron (NR_036438, intron 5 of 9) 8981 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 1920 chr18 21196771 21199957 + 0 NA intron (NM_173505, intron 7 of 9) AluSz6|SINE|Alu -31783 NM_000271 4864 Hs.715623 XM_005258277 ENSG00000141458 NPC1 NPC Niemann-Pick disease, type C1 protein-coding 2465 chr8 62593304 62639708 + 0 NA intron (NM_032466, intron 1 of 13) L1ME2z|LINE|L1 10693 NM_004318 444 Hs.332422 XM_005251235 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 1831 chr16 31264269 31265876 + 0 NA Intergenic L2a|LINE|L2 -6216 NM_001145808 3684 Hs.172631 NM_000632 ENSG00000169896 ITGAM CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6 integrin, alpha M (complement component 3 receptor 3 subunit) protein-coding 2992 chr3 78777109 78778762 + 0 NA intron (NM_133631, intron 3 of 28) intron (NM_133631, intron 3 of 28) 290674 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 2639 chr9 131673196 131677037 + 0 NA intron (NM_019594, intron 3 of 3) intron (NM_019594, intron 3 of 3) -8058 NM_174933 254295 Hs.709447 XM_005251874 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 1218 chr8 62645392 62647523 + 0 NA Intergenic Intergenic 19110 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 1404 chr1 30181044 30183510 + 0 NA Intergenic MIRc|SINE|MIR 619249 NM_001195001 10076 Hs.19718 XM_005245710 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type, U protein-coding 2398 chr7 11813447 11818145 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 56028 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 1543 chr11 2762121 2764350 + 0 NA intron (NM_181798, intron 11 of 15) intron (NM_181798, intron 11 of 15) -42007 NR_002728 10984 Hs.741312 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) ncRNA 259 chr12 31556118 31556919 + 0 NA intron (NM_144973, intron 14 of 20) AluSx1|SINE|Alu -77359 NM_001135812 58516 Hs.505154 XM_005253456 ENSG00000139146 FAM60A C12orf14|TERA family with sequence similarity 60, member A protein-coding 424 chr15 102067064 102069640 + 0 NA Intergenic Intergenic -38165 NM_138322 5046 Hs.665989 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 1625 chr12 123928232 123934293 + 0 NA Intergenic AluSx3|SINE|Alu -9998 NM_145058 196383 Hs.488173 XR_242952 ENSG00000150977 RILPL2 RLP2 Rab interacting lysosomal protein-like 2 protein-coding 163 chr11 469116 470508 + 0 NA intron (NM_030783, intron 2 of 11) L1MC3|LINE|L1 19532 NM_030783 81490 Hs.731700 XM_005253153 ENSG00000174915 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 1106 chr7 116104767 116106963 + 0 NA Intergenic Intergenic -33790 NM_001206747 858 Hs.603096 NM_001206747 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 1402 chr1 28960210 28962414 + 0 NA intron (NM_005644, intron 1 of 5) AluSp|SINE|Alu 8292 NM_001135218 6883 Hs.530251 XM_005245977 ENSG00000120656 TAF12 TAF2J|TAFII20 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa protein-coding 1836 chr16 58484172 58487995 + 0 NA Intergenic MER34A1|LTR|ERV1 -11466 NM_020465 65009 Hs.322430 NM_001130487 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 2986 chr3 43898792 43900625 + 0 NA Intergenic LTR16A|LTR|ERVL 167333 NM_016006 51099 Hs.19385 XM_005265197 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 2402 chr7 26194610 26197137 + 0 NA intron (NM_004289, intron 1 of 3) MIR|SINE|MIR 4026 NM_004289 9603 Hs.712898 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2-like 3 protein-coding 1531 chr11 64847662 64853073 + 0 NA intron (NM_080668, intron 4 of 5) L2c|LINE|L2 1248 NM_080668 113130 Hs.434886 XM_005273733 ENSG00000146670 CDCA5 SORORIN cell division cycle associated 5 protein-coding 2731 chr10 37506992 37509928 + 0 NA exon (NM_052997, exon 34 of 36) exon (NM_052997, exon 34 of 36) -89654 NR_104061 101929520 Hs.144151 XR_242757 LINC00993 RP11-20F24.4 long intergenic non-protein coding RNA 993 ncRNA 2929 chr2 120195096 120196946 + 0 NA TTS (NM_183240) TTS (NM_183240) 6575 NM_183240 140738 Hs.26216 XM_005263597 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 1841 chr16 70436224 70439833 + 0 NA intron (NM_006927, intron 1 of 6) L2|LINE|L2 34963 NM_006927 6483 Hs.368611 XM_005256114 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 347 chr14 35859807 35861046 + 0 NA Intergenic MIRb|SINE|MIR 13534 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding 2738 chr11 865548 868416 + 0 NA TTS (NM_023947) TTS (NM_023947) 22536 NM_001025237 7106 Hs.654836 XM_005253102 ENSG00000214063 TSPAN4 NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4 tetraspanin 4 protein-coding 1333 chrX 30324535 30327800 + 0 NA intron (NM_000475, intron 1 of 1) intron (NM_000475, intron 1 of 1) 1328 NM_000475 190 Hs.268490 NM_000475 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0, group B, member 1 protein-coding 2586 chr8 134663242 134665367 + 0 NA Intergenic L2c|LINE|L2 -80121 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 434 chr16 55786972 55787765 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR -7143 NR_003276 51716 Hs.721645 NR_003276 ENSG00000228695 CES1P1 CES1A2|CES1A3|CES4|CESR|PCE-3 carboxylesterase 1 pseudogene 1 pseudo 865 chr3 45224167 45225565 + 0 NA Intergenic Intergenic -36952 NM_178181 64866 Hs.476093 XM_005265404 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 1184 chr8 27861498 27863752 + 0 NA Intergenic MER57B1|LTR|ERV1 -12256 NM_173833 286133 Hs.591833 XM_005273479 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A, member 5 (putative) protein-coding 3165 chr8 38393776 38395671 + 0 NA Intergenic AluY|SINE|Alu -8543 NM_207412 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 2770 chr11 103663990 103664858 + 0 NA Intergenic AluSx1|SINE|Alu -56210 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 3087 chr6 49502589 49505391 + 0 NA Intergenic Intergenic -14123 NM_001145652 135398 Hs.722010 XM_005248850 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 442 chr16 1922100 1923020 + 0 NA promoter-TSS (NM_001163560) promoter-TSS (NM_001163560) -381 NM_001163560 254528 Hs.729604 XM_005255234 ENSG00000162039 MEIOB C16orf73|gs129 meiosis specific with OB domains protein-coding 2156 chr3 106934269 106939060 + 0 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 22821 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 RP11-280F2.2 long intergenic non-protein coding RNA 882 ncRNA 1577 chr11 63851028 63863951 + 0 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) -13873 NM_013280 23769 Hs.584876 XM_005273861 ENSG00000126500 FLRT1 RP11-21A7A.2 fibronectin leucine rich transmembrane protein 1 protein-coding 1572 chr11 61593981 61598092 + 0 NA exon (NM_004265, exon 1 of 12) exon (NM_004265, exon 1 of 12) 531 NM_004265 9415 Hs.502745 NM_001281501 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 2851 chr16 15553408 15555919 + 0 NA intron (NM_033201, intron 1 of 5) L2c|LINE|L2 26338 NM_033201 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 3129 chr7 130877277 130879111 + 0 NA intron (NM_001145354, intron 2 of 18) AluSx3|SINE|Alu 83339 NM_001145354 4289 Hs.44693 XM_005250355 ENSG00000128585 MKLN1 TWA2 muskelin 1, intracellular mediator containing kelch motifs protein-coding 689 chr2 28548506 28549539 + 0 NA intron (NM_199192, intron 12 of 12) intron (NM_199192, intron 12 of 12) -15696 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 AC093690.1 - uncharacterized LOC100505716 ncRNA 886 chr3 148941616 148944026 + 0 NA Intergenic Intergenic -2989 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 1116 chr8 22413181 22414582 + 0 NA intron (NM_005775, intron 3 of 20) MIRb|SINE|MIR 4630 NM_005775 10174 Hs.528572 XM_005273370 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 2835 chr15 71493535 71497437 + 0 NA intron (NM_024817, intron 2 of 16) intron (NM_024817, intron 2 of 16) 61698 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 1329 chr9 132312143 132313534 + 0 NA Intergenic CpG -58325 NM_001286796 28989 Hs.744027 XM_005251936 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 2869 chr17 29378637 29380309 + 0 NA Intergenic L3|LINE|CR1 41970 NR_039886 100616266 NR_039886 ENSG00000265444 MIR4733 - microRNA 4733 ncRNA 1725 chr14 93194803 93197444 + 0 NA intron (NM_001008530, intron 3 of 14) intron (NM_001008530, intron 3 of 14) 18924 NM_001008530 5641 Hs.18069 XM_005267862 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 2379 chr7 47266213 47268911 + 0 NA Intergenic Intergenic 354180 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 727 chr2 165391753 165392609 + 0 NA intron (NM_004490, intron 3 of 13) intron (NM_004490, intron 3 of 13) 86179 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 3243 chr9 131991283 131992744 + 0 NA Intergenic Intergenic -51473 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5-like protein-coding 320 chr13 45287730 45289000 + 0 NA Intergenic Intergenic 95401 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330|RP11-96M12.1 long intergenic non-protein coding RNA 330 ncRNA 939 chr4 177699125 177700090 + 0 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 14292 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|VRP vascular endothelial growth factor C protein-coding 2619 chr9 66032150 66042737 + 0 NA Intergenic MIR|SINE|MIR -456826 NR_024496 442421 Hs.745371 NR_024496 PTGER4P2-CDK2AP2P2 PTGER4P2 PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene pseudo 811 chr22 24585104 24586408 + 0 NA TTS (NM_019601) TTS (NM_019601) 8312 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 1670 chr12 123160975 123167606 + 0 NA Intergenic AluJo|SINE|Alu 23614 NM_177551 338442 Hs.524812 XM_005253569 ENSG00000182782 HCAR2 GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g hydroxycarboxylic acid receptor 2 protein-coding 2010 chr2 29032614 29034348 + 0 NA promoter-TSS (NM_182756) promoter-TSS (NM_182756) -219 NM_182756 245711 Hs.511956 XM_005264239 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 2834 chr15 69650566 69653200 + 0 NA intron (NM_017705, intron 2 of 8) LTR2|LTR|ERV1 45141 NM_001104554 54852 Hs.591096 XM_005254494 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member V protein-coding 465 chr16 16293610 16294453 + 0 NA intron (NM_001171, intron 9 of 30) AluSq|SINE|Alu 23297 NM_001171 368 Hs.442182 XM_005255310 ENSG00000091262 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 249 chr12 63191923 63193111 + 0 NA intron (NM_020700, intron 3 of 9) intron (NM_020700, intron 3 of 9) 136148 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 1612 chr12 53262509 53276557 + 0 NA Intergenic Intergenic -26755 NM_173352 196374 Hs.665267 XM_005268695 ENSG00000170423 KRT78 K5B|Kb40 keratin 78 protein-coding 819 chr22 30615642 30617599 + 0 NA Intergenic Intergenic 26220 NM_001257135 3976 Hs.2250 XM_005261601 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 1177 chr8 25060836 25061666 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 18964 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1189 chr8 29498809 29500050 + 0 NA Intergenic Intergenic 106196 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 1127 chr8 90898000 90903275 + 0 NA Intergenic HAL1|LINE|L1 -13459 NM_004337 734 Hs.436445 NM_001126111 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 1537 chr11 122533431 122549875 + 0 NA intron (NM_032873, intron 1 of 13) AluSx|SINE|Alu 15255 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 894 chr3 171662084 171663478 + 0 NA Intergenic Intergenic -94637 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 1748 chr15 45936182 45942207 + 0 NA intron (NM_021199, intron 1 of 9) intron (NM_021199, intron 1 of 9) 12256 NM_021199 58472 Hs.743355 XM_005254571 ENSG00000137767 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 2127 chr22 36179480 36181272 + 0 NA intron (NM_001082578, intron 3 of 13) intron (NM_001082578, intron 3 of 13) 56254 NM_001082577 23543 Hs.282998 XM_005261428 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding protein, fox-1 homolog (C. elegans) 2 protein-coding 858 chr3 30274739 30276659 + 0 NA Intergenic Intergenic -372295 NM_001024847 7048 Hs.604277 NM_001024847 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 1298 chr9 4904072 4904888 + 0 NA Intergenic Intergenic 54183 NR_029836 406894 NR_029836 MIR101-2 MIRN101-2 microRNA 101-2 ncRNA 140 chr10 128085981 128087425 + 0 NA Intergenic Intergenic -9576 NM_021641 8038 Hs.741333 XM_005270188 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 2222 chr4 169012933 169021656 + 0 NA intron (NM_007193, intron 1 of 11) intron (NM_007193, intron 1 of 11) 3606 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 1900 chr17 74247245 74249374 + 0 NA Intergenic Intergenic -11919 NM_052916 114804 Hs.500643 XM_005257006 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 385 chr15 36791787 36792970 + 0 NA Intergenic Intergenic -79434 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 954 chr5 28620051 28621407 + 0 NA Intergenic AluSc|SINE|Alu -306248 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 1359 chr1 23853707 23859020 + 0 NA intron (NM_004091, intron 1 of 6) intron (NM_004091, intron 1 of 6) 1349 NM_004091 1870 Hs.194333 XM_005245748 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 1479 chr10 34721285 34723950 + 0 NA intron (NM_001184790, intron 4 of 22) intron (NM_001184790, intron 4 of 22) 381636 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2578 chr8 129536461 129539484 + 0 NA Intergenic MER58A|DNA|hAT-Charlie 375610 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 801 chr22 30096692 30099232 + 0 NA Intergenic Intergenic -18382 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 985 chr5 100225414 100227189 + 0 NA intron (NM_005668, intron 2 of 4) intron (NM_005668, intron 2 of 4) 12688 NM_005668 7903 Hs.308628 XM_005272078 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 971 chr5 76109873 76111100 + 0 NA Intergenic AluSq|SINE|Alu -4347 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 coagulation factor II (thrombin) receptor-like 1 protein-coding 754 chr20 1396297 1397584 + 0 NA Intergenic Intergenic -23124 NM_000801 2280 Hs.700839 XM_005260673 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FK506 binding protein 1A, 12kDa protein-coding 3151 chr8 17700716 17704093 + 0 NA Intergenic Intergenic -43978 NM_001001925 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 479 chr16 57923501 57925100 + 0 NA intron (NM_001286130, intron 31 of 32) MER124|DNA?|DNA? 79751 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 847 chr3 8782949 8784140 + 0 NA intron (NM_001234, intron 1 of 2) intron (NM_001234, intron 1 of 2) 8058 NM_001234 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 1166 chr8 23039226 23040548 + 0 NA Intergenic LOR1-int|LTR|ERV1 -18344 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding 3061 chr5 28616672 28618449 + 0 NA Intergenic Intergenic -309417 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 3091 chr6 120678071 120680988 + 0 NA Intergenic MER11B|LTR|ERVK -867062 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 2166 chr3 185824415 185828380 + 0 NA intron (NM_004454, intron 1 of 12) CpG 504 NM_004454 2119 Hs.43697 XM_005247210 ENSG00000244405 ETV5 ERM ets variant 5 protein-coding 1563 chr11 35324669 35327737 + 0 NA intron (NM_004171, intron 5 of 10) intron (NM_004171, intron 5 of 10) 114902 NM_004171 6506 Hs.502338 XM_005253066 ENSG00000110436 SLC1A2 EAAT2|GLT-1 solute carrier family 1 (glial high affinity glutamate transporter), member 2 protein-coding 1003 chr6 2865539 2867304 + 0 NA intron (NR_033851, intron 1 of 1) MER21C|LTR|ERVL 10323 NR_033851 221756 Hs.8162 NM_182544 MGC39372 - serpin peptidase inhibitor, clade B (ovalbumin), member 9 pseudogene pseudo 1378 chr1 178206318 178209916 + 0 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -102489 NM_004841 9462 Hs.496139 XM_005245619 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 1054 chr7 68156230 68157961 + 0 NA Intergenic MamRep605|Unknown|Unknown 905386 NR_108105 100507468 Hs.362492 XR_108828 LOC100507468 - uncharacterized LOC100507468 ncRNA 1800 chr16 31275783 31277878 + 0 NA intron (NM_000632, intron 3 of 29) intron (NM_000632, intron 3 of 29) 5542 NM_000632 3684 Hs.172631 NM_000632 ENSG00000169896 ITGAM CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6 integrin, alpha M (complement component 3 receptor 3 subunit) protein-coding 2821 chr14 102736382 102741567 + 0 NA intron (NM_014226, intron 2 of 11) L1M5|LINE|L1 -32016 NR_073541 5891 Hs.104119 NM_001272011 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1 MOK protein kinase protein-coding 2101 chr21 35173002 35175337 + 0 NA intron (NM_001001132, intron 19 of 29) intron (NM_001001132, intron 19 of 29) 113989 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5O ATPO|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 619 chr19 1185198 1186019 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -11326 NM_014963 22904 Hs.408708 XM_005259519 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 1717 chr14 56217401 56221715 + 0 NA Intergenic Intergenic -13405 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 2557 chr8 102109553 102111642 + 0 NA Intergenic L2a|LINE|L2 46315 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 RP11-302J23.1 uncharacterized LOC441374 ncRNA 698 chr2 42362513 42367491 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -31488 NM_001145076 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 1634 chr12 31555661 31557707 + 0 NA intron (NM_144973, intron 14 of 20) AluSg|SINE|Alu -77525 NM_001135812 58516 Hs.505154 XM_005253456 ENSG00000139146 FAM60A C12orf14|TERA family with sequence similarity 60, member A protein-coding 621 chr19 2468756 2470289 + 0 NA Intergenic Intergenic -6601 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 524 chr17 18981621 18983335 + 0 NA Intergenic Intergenic -32142 NM_006613 10750 Hs.567416 XM_005256425 GRAP - GRB2-related adaptor protein protein-coding 2176 chr3 45223687 45226247 + 0 NA Intergenic Intergenic -37053 NM_178181 64866 Hs.476093 XM_005265404 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 1848 chr16 89640298 89643973 + 0 NA promoter-TSS (NM_153636) promoter-TSS (NM_153636) -41 NM_014427 27132 Hs.461775 XR_243505 ENSG00000178773 CPNE7 - copine VII protein-coding 2714 chr10 134479036 134482033 + 0 NA intron (NM_005539, intron 4 of 15) intron (NM_005539, intron 4 of 15) 119003 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B NK6 homeobox 2 protein-coding 2310 chr5 78011534 78020079 + 0 NA Intergenic Intergenic -71158 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 2495 chr8 11747403 11750711 + 0 NA Intergenic AluJo|SINE|Alu -23411 NM_147782 1508 Hs.520898 XM_005272367 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 598 chr18 24063232 24063890 + 0 NA intron (NM_001258221, intron 2 of 4) intron (NM_001258221, intron 2 of 4) 64939 NM_001142730 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 3052 chr5 10631080 10633306 + 0 NA intron (NM_001164440, intron 2 of 3) MER72|LTR|ERV1 67758 NM_001164440 651746 Hs.26039 XM_005248343 ANKRD33B RP11-215G15.5 ankyrin repeat domain 33B protein-coding 2486 chr8 145666778 145672226 + 0 NA intron (NM_013432, intron 2 of 25) CpG-26242 310 NM_013432 4796 Hs.675285 XM_005272320 ENSG00000160949 TONSL IKBR|NFKBIL2 tonsoku-like, DNA repair protein protein-coding 2322 chr5 150283837 150285442 + 0 NA promoter-TSS (NM_052860) promoter-TSS (NM_052860) -94 NM_052860 91975 Hs.134885 NM_001172831 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 780 chr20 49251841 49253537 + 0 NA intron (NM_080829, intron 1 of 21) intron (NM_080829, intron 1 of 21) 737 NM_080829 140876 Hs.372578 XM_005260294 ENSG00000042062 FAM65C C20orf175|C20orf176|dJ530I15.2|dJ530I15.3 family with sequence similarity 65, member C protein-coding 2438 chr8 22409945 22425151 + 0 NA intron (NM_005775, intron 5 of 20) AluSx|SINE|Alu -5631 NM_001018003 10174 Hs.528572 XM_005273370 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 2317 chr5 100224873 100227627 + 0 NA intron (NM_005668, intron 2 of 4) intron (NM_005668, intron 2 of 4) 12739 NM_005668 7903 Hs.308628 XM_005272078 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 3246 chrX 48343385 48349798 + 0 NA Intergenic Intergenic 12182 NM_177439 24140 Hs.23170 XM_005272595 ENSG00000068438 FTSJ1 CDLIV|MRX44|MRX9|SPB1|TRMT7 FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding 240 chr11 122525877 122528469 + 0 NA intron (NM_032873, intron 1 of 13) CpG 775 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 1433 chr1 199945038 199947464 + 0 NA Intergenic L2a|LINE|L2 -50479 NM_003822 2494 Hs.33446 XM_005245061 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 1666 chr12 116939196 116947650 + 0 NA Intergenic Intergenic -27804 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 2209 chr3 178068061 178071055 + 0 NA Intergenic Intergenic -67431 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1|RP11-33A14.2 long intergenic non-protein coding RNA 1014 ncRNA 230 chr11 73098463 73100841 + 0 NA intron (NM_032871, intron 1 of 10) intron (NM_032871, intron 1 of 10) 11939 NM_032871 84957 Hs.533720 XM_005274356 ENSG00000054967 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding 115 chr10 34694352 34695637 + 0 NA intron (NM_001184790, intron 4 of 22) intron (NM_001184790, intron 4 of 22) 409259 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 377 chr15 90357713 90358824 + 0 NA promoter-TSS (NM_001150) promoter-TSS (NM_001150) -196 NM_001150 290 Hs.1239 XM_005254892 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl (membrane) aminopeptidase protein-coding 2374 chr7 15594972 15598064 + 0 NA intron (NM_001004320, intron 2 of 12) intron (NM_001004320, intron 2 of 12) 5122 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 2050 chr2 216273919 216276912 + 0 NA intron (NM_212474, intron 13 of 43) AluSp|SINE|Alu 25376 NM_212478 2335 Hs.203717 XM_005246397 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF fibronectin 1 protein-coding 602 chr18 67989465 67991528 + 0 NA intron (NM_004232, intron 1 of 1) intron (NM_004232, intron 1 of 1) 34359 NM_004232 9306 Hs.44439 XM_005266783 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 922 chr4 95889212 95890099 + 0 NA intron (NM_001203, intron 2 of 12) Charlie26a|DNA|hAT-Charlie -27728 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2319 chr5 137665947 137668596 + 0 NA intron (NM_001790, intron 1 of 13) intron (NM_001790, intron 1 of 13) 295 NM_001287582 995 Hs.656 XM_005272144 ENSG00000158402 CDC25C CDC25|PPP1R60 cell division cycle 25C protein-coding 1311 chr9 82185045 82186536 + 0 NA promoter-TSS (NM_001282753) promoter-TSS (NM_001282753) -898 NM_001282753 7091 Hs.444213 XM_005252167 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) protein-coding 2741 chr11 27458209 27463971 + 0 NA intron (NM_018490, intron 1 of 17) L1MB3|LINE|L1 33244 NM_018490 55366 Hs.502176 XM_005253004 ENSG00000205213 LGR4 BNMD17|GPR48 leucine-rich repeat containing G protein-coupled receptor 4 protein-coding 2628 chr9 95873427 95877583 + 0 NA TTS (NM_032310) TTS (NM_032310) 17055 NM_032310 84270 Hs.434213 XM_005252272 ENSG00000165233 C9orf89 BinCARD|bA370F5.1 chromosome 9 open reading frame 89 protein-coding 1072 chr7 11867400 11868178 + 0 NA intron (NM_015204, intron 1 of 26) L2c|LINE|L2 4035 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2470 chr8 101678729 101682766 + 0 NA Intergenic Intergenic -18854 NM_152628 169166 Hs.567758 XM_005250811 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 1787 chr15 102028271 102030813 + 0 NA intron (NM_138324, intron 1 of 14) CpG 645 NM_138323 5046 Hs.665989 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 1394 chr1 9471353 9475228 + 0 NA Intergenic Intergenic 15685 NR_104623 100506022 Hs.568596 XR_109872 LOC100506022 - uncharacterized LOC100506022 ncRNA 612 chr19 48856782 48859987 + 0 NA intron (NM_018273, intron 3 of 7) AluSx1|SINE|Alu 8802 NM_018273 55260 Hs.351335 XM_005259031 ENSG00000161558 TMEM143 - transmembrane protein 143 protein-coding 2772 chr11 122517283 122518457 + 0 NA Intergenic Intergenic -8528 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 936 chr4 174255679 174257984 + 0 NA Intergenic Intergenic -1236 NM_002129 3148 Hs.434953 NM_001130688 HMGB2 HMG2 high mobility group box 2 protein-coding 1391 chr1 9044850 9048441 + 0 NA Intergenic AluJo|SINE|Alu 39759 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT7 solute carrier family 2 (facilitated glucose transporter), member 7 protein-coding 2251 chr4 95937648 95942441 + 0 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) 22661 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 1277 chr8 134663470 134665024 + 0 NA Intergenic L2c|LINE|L2 -80064 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1086 chr7 68169986 68172985 + 0 NA Intergenic Intergenic 890996 NR_108105 100507468 Hs.362492 XR_108828 LOC100507468 - uncharacterized LOC100507468 ncRNA 2794 chr13 47233131 47235597 + 0 NA intron (NM_015116, intron 2 of 18) AluY|SINE|Alu 107068 NM_015116 23143 Hs.507971 NM_001164211 ENSG00000136141 LRCH1 CHDC1|NP81 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding 701 chr2 44460325 44463704 + 0 NA TTS (NM_177968) TTS (NM_177968) -40583 NM_000341 6519 Hs.112916 NM_000341 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 (amino acid transporter heavy chain), member 1 protein-coding 214 chr11 66102650 66104774 + 0 NA intron (NM_004292, intron 1 of 9) intron (NM_004292, intron 1 of 9) 288 NM_004292 9610 Hs.1030 XM_005274410 ENSG00000174791 RIN1 - Ras and Rab interactor 1 protein-coding 564 chr17 71337271 71338949 + 0 NA intron (NM_001144952, intron 44 of 44) MIR|SINE|MIR -29967 NM_012121 23580 Hs.3903 XM_005257182 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 3070 chr5 78073800 78076654 + 0 NA 3' UTR (NM_000046, exon 8 of 8) 3' UTR (NM_000046, exon 8 of 8) -130579 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 2708 chr1 209577529 209579561 + 0 NA Intergenic Intergenic -23623 NM_001104548 642587 Hs.510543 XM_005273225 MIR205HG LINC00510 MIR205 host gene (non-protein coding) protein-coding 2562 chr8 108507658 108510406 + 0 NA intron (NM_001146, intron 1 of 8) intron (NM_001146, intron 1 of 8) 1222 NM_001146 284 Hs.369675 XM_005250873 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 3094 chr6 134349880 134352657 + 0 NA intron (NM_145176, intron 1 of 4) intron (NM_145176, intron 1 of 4) 22521 NM_145176 154091 Hs.486508 NM_145176 SLC2A12 GLUT12|GLUT8 solute carrier family 2 (facilitated glucose transporter), member 12 protein-coding 2789 chr12 86207473 86209470 + 0 NA intron (NM_005447, intron 1 of 1) intron (NM_005447, intron 1 of 1) 21847 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 protein-coding 1650 chr12 76104012 76109499 + 0 NA Intergenic Intergenic -201337 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 2074 chr20 5701854 5708083 + 0 NA Intergenic AluSg|SINE|Alu -26075 NM_152504 149840 Hs.529340 NM_152504 ENSG00000171984 C20orf196 - chromosome 20 open reading frame 196 protein-coding 2539 chr8 52306491 52312974 + 0 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 412273 NM_144651 137902 Hs.444882 XM_005251167 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 2850 chr16 12518608 12520535 + 0 NA intron (NM_032167, intron 18 of 20) intron (NM_032167, intron 18 of 20) -294607 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 2547 chr8 67782350 67783703 + 0 NA promoter-TSS (NM_001136161) promoter-TSS (NM_001136161) 42 NM_001136161 157777 Hs.437006 XM_005251173 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 731 chr2 169636160 169638249 + 0 NA intron (NR_045787, intron 1 of 2) intron (NR_045787, intron 1 of 2) 5735 NR_045787 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 AC009475.2 CERS6 antisense RNA 1 ncRNA 1967 chr19 18547534 18552383 + 0 NA promoter-TSS (NM_001170938) promoter-TSS (NM_001170938) -847 NM_001170938 51477 Hs.405873 NM_001170938 ENSG00000105655 ISYNA1 INO1|INOS|IPS|IPS 1|IPS-1 inositol-3-phosphate synthase 1 protein-coding 2779 chr12 1608548 1610396 + 0 NA promoter-TSS (NR_028415) promoter-TSS (NR_028415) -185 NR_028415 100292680 Hs.391695 NR_028415 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 657 chr19 46430994 46431814 + 0 NA Intergenic Intergenic -13368 NM_001029861 339345 Hs.434218 NM_001029861 ENSG00000188425 NANOS2 NOS2 nanos homolog 2 (Drosophila) protein-coding 2139 chr22 49895082 49897067 + 0 NA Intergenic Intergenic 155116 NR_026997 348645 Hs.133159 XR_244372 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 ncRNA 1865 chr17 64535455 64541109 + 0 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) 239356 NM_002737 5578 Hs.708867 XM_005257502 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PRKACA protein kinase C, alpha protein-coding 1783 chr15 90117441 90123673 + 0 NA intron (NM_152259, intron 1 of 21) intron (NM_152259, intron 1 of 21) 1739 NM_152259 90381 Hs.441708 XM_005254985 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1-interacting checkpoint and replication regulator protein-coding 768 chr20 42294939 42297091 + 0 NA intron (NM_002466, intron 1 of 13) CpG 356 NM_001278610 4605 Hs.179718 NM_001278610 ENSG00000101057 MYBL2 B-MYB|BMYB v-myb avian myeloblastosis viral oncogene homolog-like 2 protein-coding 1928 chr18 55679197 55682276 + 0 NA Intergenic Intergenic -30874 NM_015277 23327 Hs.185677 XM_005266657 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 1092 chr7 76583371 76583907 + 0 NA Intergenic AluSq2|SINE|Alu -26500 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 503 chr17 9551093 9552587 + 0 NA intron (NM_001267576, intron 1 of 14) L2c|LINE|L2 2986 NM_001267576 124739 Hs.709621 XM_005256441 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 2255 chr4 102785722 102787567 + 0 NA intron (NM_001083907, intron 4 of 16) L1MCa|LINE|L1 51661 NM_001083907 55024 Hs.480400 NM_001083907 ENSG00000153064 BANK1 BANK B-cell scaffold protein with ankyrin repeats 1 protein-coding 1756 chr15 30462975 30464754 + 0 NA Intergenic Intergenic -24375 NR_026771 26082 Hs.652128 NR_026771 ENSG00000225930 DKFZP434L187 AC026150.5 uncharacterized LOC26082 ncRNA 1636 chr12 31787540 31790875 + 0 NA Intergenic (CAAA)n|Simple_repeat|Simple_repeat -10887 NM_001135864 254013 Hs.740628 XM_005253345 ENSG00000139160 METTL20 C12orf72 methyltransferase like 20 protein-coding 2491 chr8 8282613 8288525 + 0 NA Intergenic Intergenic -46312 NM_001080826 157285 Hs.657673 XM_005272369 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 1483 chr10 34844355 34846929 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 258611 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 338 chr14 103480489 103482068 + 0 NA intron (NM_006035, intron 1 of 36) intron (NM_006035, intron 1 of 36) 42464 NM_006035 9578 Hs.654634 XM_005268227 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta (DMPK-like) protein-coding 3105 chr7 145340194 145344245 + 0 NA Intergenic AluSg|SINE|Alu -471234 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein-like 2 protein-coding 576 chr17 78037836 78038714 + 0 NA intron (NM_001243342, intron 9 of 17) intron (NM_001243342, intron 9 of 17) 27844 NM_017950 55036 Hs.202542 XM_005257491 ENSG00000141519 CCDC40 CILD15|FAP172 coiled-coil domain containing 40 protein-coding 761 chr20 10347532 10348554 + 0 NA Intergenic Intergenic 64530 NM_018848 8195 Hs.741430 XM_005260853 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 1996 chr2 191701211 191713693 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -38095 NM_001256310 2744 Hs.737608 XM_005246467 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 738 chr2 197503711 197505267 + 0 NA 5' UTR (NM_001080539, exon 1 of 28) 5' UTR (NM_001080539, exon 1 of 28) 133 NM_001080539 284992 Hs.132519 XM_005246472 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 1775 chr15 71402681 71416315 + 0 NA Intergenic Intergenic -1659 NM_001102658 196993 Hs.646533 XM_005254222 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 1415 chr1 66750904 66753772 + 0 NA intron (NM_001037341, intron 7 of 16) intron (NM_001037341, intron 7 of 16) -45455 NM_001037339 5142 Hs.198072 XM_005270923 ENSG00000184588 PDE4B DPDE4|PDE4B5|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 484 chr16 68955043 68956690 + 0 NA intron (NM_024562, intron 12 of 17) intron (NM_024562, intron 12 of 17) 78357 NM_024562 79613 Hs.13526 XR_243424 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog (Drosophila) protein-coding 2334 chr6 11042773 11045434 + 0 NA promoter-TSS (NR_038962) intron (NR_038963, intron 1 of 2) 112 NR_038963 100506409 Hs.43818 NR_038962 ELOVL2-AS1 RP1-62D2.3 ELOVL2 antisense RNA 1 ncRNA 1036 chr6 41943949 41945788 + 0 NA intron (NM_001136017, intron 1 of 4) L3|LINE|CR1 -35282 NM_001136125 896 Hs.534307 XM_005249463 ENSG00000112576 CCND3 - cyclin D3 protein-coding 1078 chr7 47267126 47267826 + 0 NA Intergenic Intergenic 354266 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 1243 chr8 103540507 103541774 + 0 NA Intergenic Intergenic -22708 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 2530 chr8 38396433 38400432 + 0 NA Intergenic AluSx|SINE|Alu -12252 NM_207412 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 2065 chr2 238639389 238643048 + 0 NA intron (NM_001137550, intron 8 of 23) intron (NM_001137550, intron 8 of 23) 40411 NM_001137553 9208 Hs.471779 XM_005246112 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP leucine rich repeat (in FLII) interacting protein 1 protein-coding 1265 chr8 129117374 129118836 + 0 NA Intergenic Intergenic -44257 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 544 chr17 42732989 42734345 + 0 NA promoter-TSS (NM_001145080) promoter-TSS (NM_001145080) -95 NM_001145080 284071 Hs.349758 XM_005257236 ENSG00000180336 C17orf104 - chromosome 17 open reading frame 104 protein-coding 623 chr19 2549493 2550544 + 0 NA intron (NM_052847, intron 3 of 4) intron (NM_052847, intron 3 of 4) 73895 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 1512 chr11 65404504 65406703 + 0 NA promoter-TSS (NM_006747) promoter-TSS (NM_006747) 25 NM_006747 6494 Hs.530477 XM_005274189 ENSG00000213445 SIPA1 SPA1 signal-induced proliferation-associated 1 protein-coding 3253 chrX 88218660 88220966 + 0 NA Intergenic Intergenic 217587 NM_001184771 53336 Hs.458292 NM_001184771 ENSG00000147183 CPXCR1 CT77 CPX chromosome region, candidate 1 protein-coding 2956 chr20 55650785 55652131 + 0 NA Intergenic Intergenic 190249 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 1196 chr8 32121783 32125125 + 0 NA intron (NM_013962, intron 1 of 4) MER2|DNA|TcMar-Tigger -174808 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 1114 chr8 145751761 145752987 + 0 NA promoter-TSS (NM_001024678) promoter-TSS (NM_001024678) 42 NM_001024678 441381 Hs.740859 NM_001024678 ENSG00000254402 LRRC24 LRRC14OS leucine rich repeat containing 24 protein-coding 2389 chr7 128070176 128076882 + 0 NA Intergenic Intergenic -22355 NM_001098786 29923 Hs.706124 NM_001098786 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet-associated protein-coding 2946 chr2 235066335 235068511 + 0 NA Intergenic Intergenic 108077 NM_006944 6694 Hs.444488 XM_005246102 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 2564 chr8 120866235 120869081 + 0 NA intron (NM_024094, intron 1 of 8) intron (NM_024094, intron 1 of 8) 512 NM_024094 79075 Hs.315167 XM_005251065 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 2382 chr7 73725796 73728645 + 0 NA intron (NM_032421, intron 1 of 15) intron (NM_032421, intron 1 of 15) 23415 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-GLY domain containing linker protein 2 protein-coding 328 chr13 109421506 109422098 + 0 NA intron (NM_015011, intron 4 of 34) L2|LINE|L2 140231 NM_001198950 23026 Hs.656587 NM_001198950 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3 myosin XVI protein-coding 239 chr11 122512525 122514930 + 0 NA Intergenic Intergenic -12671 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 2635 chr9 118134602 118136974 + 0 NA intron (NM_017418, intron 4 of 7) intron (NM_017418, intron 4 of 7) 231691 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 122 chr10 34844526 34846191 + 0 NA intron (NM_001184790, intron 2 of 22) AluY|SINE|Alu 258895 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 269 chr12 62974830 62977331 + 0 NA intron (NM_001278469, intron 32 of 35) intron (NM_001278469, intron 32 of 35) 21134 NM_175895 283416 Hs.375881 NM_175895 ENSG00000221949 C12orf61 - chromosome 12 open reading frame 61 protein-coding 628 chr19 5174484 5175228 + 0 NA Intergenic Intergenic 165958 NM_002850 5802 Hs.744928 XM_005259600 ENSG00000105426 PTPRS PTPSIGMA protein tyrosine phosphatase, receptor type, S protein-coding 878 chr3 117266105 117268291 + 0 NA Intergenic Intergenic 838563 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|NCRNA00295|RP11-115O13.1 tumor suppressor candidate 7 (non-protein coding) ncRNA 1223 chr8 66885204 66886991 + 0 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -47694 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 2277 chr5 36501456 36504473 + 0 NA Intergenic Intergenic -103493 NM_001166696 6507 Hs.481918 XM_005248342 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 363 chr14 101158791 101160283 + 0 NA Intergenic L2a|LINE|L2 -33665 NM_003836 8788 Hs.533717 XM_005268153 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta-like 1 homolog (Drosophila) protein-coding 2353 chr6 32886478 32890690 + 0 NA Intergenic L1MEd|LINE|L1 20263 NM_002118 3109 Hs.351279 XM_005249045 ENSG00000242574 HLA-DMB D6S221E|RING7 major histocompatibility complex, class II, DM beta protein-coding 3198 chr8 91996685 91998453 + 0 NA promoter-TSS (NM_001190972) promoter-TSS (NM_001190972) -84 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 3215 chr8 128991873 128995841 + 0 NA intron (NR_003367, intron 2 of 7) intron (NR_003367, intron 2 of 7) 20978 NR_031610 100302161 NR_031610 ENSG00000221771 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 733 chr2 173951187 173953112 + 0 NA intron (NM_016653, intron 1 of 19) intron (NM_016653, intron 1 of 19) 11584 NM_016653 51776 Hs.444451 XM_005246639 ENSG00000091436 ZAK AZK|MLK7|MLT|MLTK|MRK|mlklak|pk sterile alpha motif and leucine zipper containing kinase AZK protein-coding 2159 chr3 119027210 119031460 + 0 NA intron (NM_020754, intron 1 of 11) MER1B|DNA|hAT-Charlie 16115 NM_020754 57514 Hs.668218 XM_005247671 ENSG00000031081 ARHGAP31 AOS1|CDGAP Rho GTPase activating protein 31 protein-coding 3059 chr5 28374845 28376082 + 0 NA Intergenic MSTD-int|LTR|ERVL-MaLR -551514 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 630 chr19 8739603 8741861 + 0 NA Intergenic Intergenic -65112 NM_030957 81794 Hs.657508 XM_005272498 ENSG00000142303 ADAMTS10 ADAM-TS10|ADAMTS-10|WMS|WMS1 ADAM metallopeptidase with thrombospondin type 1 motif, 10 protein-coding 997 chr5 176805609 176807334 + 0 NA Intergenic Intergenic -4961 NM_003052 6569 Hs.936 XM_005265973 ENSG00000131183 SLC34A1 FRTS2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2 solute carrier family 34 (type II sodium/phosphate contransporter), member 1 protein-coding 1449 chr10 13810827 13814180 + 0 NA intron (NM_018027, intron 6 of 24) AluJo|SINE|Alu 183564 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 608 chr19 16449025 16450140 + 0 NA Intergenic Intergenic 13931 NM_016270 10365 Hs.744182 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel-like factor 2 protein-coding 2873 chr17 53487023 53490450 + 0 NA exon (NM_012329, exon 3 of 7) exon (NM_012329, exon 3 of 7) 10605 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 1234 chr8 90894522 90895802 + 0 NA Intergenic L1MEd|LINE|L1 -18934 NM_004337 734 Hs.436445 NM_001126111 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 1649 chr12 76099248 76101609 + 0 NA Intergenic Intergenic -195010 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 2226 chr4 330704 332794 + 0 NA 5' UTR (NM_003441, exon 1 of 4) 5' UTR (NM_003441, exon 1 of 4) 153 NM_003441 7700 Hs.654355 XM_005272294 ZNF141 D4S90|PAPA6|pHZ-44 zinc finger protein 141 protein-coding 2878 chr17 72223729 72225534 + 0 NA intron (NM_032646, intron 2 of 13) L3|LINE|CR1 14935 NM_032646 94015 Hs.27935 XM_005257824 ENSG00000141540 TTYH2 C17orf29 tweety family member 2 protein-coding 1314 chr9 113337152 113338895 + 0 NA intron (NM_153366, intron 1 of 47) intron (NM_153366, intron 1 of 47) 4137 NM_153366 79987 Hs.726867 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 2748 chr11 25086128 25088532 + 0 NA intron (NM_001009909, intron 10 of 11) intron (NM_001009909, intron 10 of 11) 568814 NM_001252008 338645 Hs.655032 XM_005252887 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1798 chr16 24656262 24659488 + 0 NA Intergenic Charlie5|DNA|hAT-Charlie -83174 NM_014494 27327 Hs.655057 XM_005255253 ENSG00000090905 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 1474 chr10 33442204 33447819 + 0 NA Intergenic Intergenic 178822 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 2535 chr8 41653940 41657649 + 0 NA promoter-TSS (NM_020477) promoter-TSS (NM_020477) -654 NM_020476 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 125 chr10 35022198 35022965 + 0 NA intron (NM_001184790, intron 1 of 22) AluSx|SINE|Alu 81672 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 522 chr17 15868569 15871127 + 0 NA intron (NM_000676, intron 1 of 1) intron (NM_000676, intron 1 of 1) 21617 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 1632 chr12 17455972 17459506 + 0 NA Intergenic LTR2|LTR|ERV1 316058 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase-associated protein 1 pseudogene 2 pseudo 44 chr1 64195859 64198666 + 0 NA Intergenic Intergenic -42428 NM_005012 4919 Hs.128753 NM_001083592 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 1423 chr1 110362904 110368283 + 0 NA Intergenic L2b|LINE|L2 -58949 NM_024526 79574 Hs.485352 XM_005271193 ENSG00000198758 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 2412 chr7 73355266 73358177 + 0 NA Intergenic L1M4b|LINE|L1 81232 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 2152 chr3 45674976 45679763 + 0 NA intron (NM_014240, intron 1 of 7) intron (NM_014240, intron 1 of 7) 41046 NM_014240 8994 Hs.621057 XM_005265529 LIMD1 - LIM domains containing 1 protein-coding 1687 chr13 109421253 109422693 + 0 NA intron (NM_015011, intron 4 of 34) L2|LINE|L2 140402 NM_001198950 23026 Hs.656587 NM_001198950 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3 myosin XVI protein-coding 667 chr19 54510895 54512943 + 0 NA intron (NM_145814, intron 3 of 3) L2c|LINE|L2 16377 NM_145814 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium channel, voltage-dependent, gamma subunit 6 protein-coding 1188 chr8 29353346 29354389 + 0 NA Intergenic Intergenic -145600 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 3142 chr8 6501508 6503258 + 0 NA Intergenic Intergenic -22642 NR_107022 102465861 NR_107022 MIR8055 hsa-mir-8055 microRNA mir-8055 ncRNA 2008 chr2 28560634 28570003 + 0 NA Intergenic MIRb|SINE|MIR -31992 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 AC093690.1 - uncharacterized LOC100505716 ncRNA 2862 chr17 157402 160698 + 0 NA intron (NM_001190411, intron 4 of 8) AluJr|SINE|Alu -21946 NM_001242780 100506388 Hs.627744 NM_001242780 LOC100506388 - uncharacterized LOC100506388 protein-coding 714 chr2 86156023 86158914 + 0 NA Intergenic Intergenic -41311 NM_003896 8869 Hs.415117 XM_005264630 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 1280 chr8 142027825 142029283 + 0 NA Intergenic Intergenic -17142 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 1564 chr11 46258167 46261850 + 0 NA Intergenic CpG -39181 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3-like 1 protein-coding 313 chr12 118772608 118775807 + 0 NA intron (NM_016281, intron 1 of 20) L1MD2|LINE|L1 36543 NM_016281 51347 Hs.644420 XM_005253897 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18 TAO kinase 3 protein-coding 2017 chr2 44458952 44465189 + 0 NA TTS (NM_177968) TTS (NM_177968) -40527 NM_000341 6519 Hs.112916 NM_000341 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 (amino acid transporter heavy chain), member 1 protein-coding 2663 chrX 122935905 122942845 + 0 NA Intergenic LTR33|LTR|ERVL -54287 NM_001204401 331 Hs.736565 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 3023 chr4 151044001 151046162 + 0 NA intron (NM_001040260, intron 2 of 15) AluJb|SINE|Alu 45655 NR_036614 166614 Hs.591683 XM_005262785 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 2884 chr18 11953784 11956396 + 0 NA Intergenic Intergenic -26337 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol(myo)-1(or 4)-monophosphatase 2 protein-coding 2661 chrX 96412849 96416897 + 0 NA intron (NM_007309, intron 22 of 26) intron (NM_007309, intron 22 of 26) 275966 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4, 30kDa protein-coding 1324 chr9 132104831 132107144 + 0 NA Intergenic Intergenic 22692 NM_001012715 414318 Hs.449434 NM_001012715 C9orf106 bA65J3.5 chromosome 9 open reading frame 106 protein-coding 397 chr15 54002734 54003778 + 0 NA intron (NM_182758, intron 8 of 19) intron (NM_182758, intron 8 of 19) 48603 NM_182758 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 1096 chr7 83823608 83825242 + 0 NA promoter-TSS (NM_006080) promoter-TSS (NM_006080) -208 NM_006080 10371 Hs.252451 XM_005250110 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 3077 chr6 94501805 94503394 + 0 NA Intergenic Intergenic 85798 NR_015362 643432 Hs.509936 XR_241850 TSG1 - tumor suppressor TSG1 ncRNA 2934 chr2 164520381 164525470 + 0 NA intron (NM_018086, intron 2 of 2) intron (NM_018086, intron 2 of 2) 69588 NM_018086 55137 Hs.593650 XM_005246661 FIGN - fidgetin protein-coding 1657 chr12 96229682 96233769 + 0 NA Intergenic Intergenic -20984 NM_003095 6636 Hs.105465 NM_003095 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 3009 chr3 158886991 158888812 + 0 NA intron (NM_001042705, intron 1 of 4) Charlie4z|DNA|hAT-Charlie 100860 NM_001197100 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 2185 chr3 78936119 78937998 + 0 NA intron (NM_133631, intron 2 of 28) intron (NM_133631, intron 2 of 28) 131551 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 2717 chr10 52641721 52645708 + 0 NA intron (NM_001198818, intron 1 of 13) MIR|SINE|MIR 1721 NM_138932 29974 Hs.282795 XM_005269718 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 1191 chr8 29813802 29815055 + 0 NA TTS (NR_036104) TTS (NR_036104) 436 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 - microRNA 3148 ncRNA 459 chr16 15600575 15602290 + 0 NA intron (NM_001142469, intron 1 of 5) L2|LINE|L2 5309 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 823 chr22 38597965 38599706 + 0 NA promoter-TSS (NM_001161573) promoter-TSS (NM_001161573) -192 NM_001161573 23764 Hs.517617 NM_001161572 ENSG00000185022 MAFF U-MAF|hMafF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F protein-coding 1495 chr10 101533243 101535072 + 0 NA Intergenic Intergenic -8306 NM_000392 1244 Hs.368243 XM_005269536 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP-binding cassette, sub-family C (CFTR/MRP), member 2 protein-coding 771 chr20 45828394 45830487 + 0 NA Intergenic L2a|LINE|L2 33831 NR_037410 100500814 NR_037410 MIR3616 - microRNA 3616 ncRNA 1753 chr15 81245118 81249140 + 0 NA Intergenic MER30|DNA|hAT-Charlie 35076 NM_015154 23184 Hs.732380 XR_243082 ENSG00000117899 MESDC2 BOCA|MESD mesoderm development candidate 2 protein-coding 401 chr15 63178374 63180121 + 0 NA Intergenic Intergenic 63091 NR_029709 406965 NR_029709 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190 microRNA 190a ncRNA 3187 chr8 67364306 67367413 + 0 NA intron (NM_144650, intron 9 of 13) intron (NM_144650, intron 9 of 13) 21141 NM_144650 137872 Hs.720023 XM_005251152 ENSG00000147576 ADHFE1 ADH8|HOT alcohol dehydrogenase, iron containing, 1 protein-coding 2688 chr1 98549856 98552178 + 0 NA Intergenic Intergenic -35768 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene (non-protein coding) ncRNA 186 chr11 47533530 47535711 + 0 NA intron (NM_001172639, intron 1 of 15) intron (NM_001172639, intron 1 of 15) 10920 NM_001172639 10658 Hs.595333 XM_005252753 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding 1797 chr16 23688705 23693925 + 0 NA intron (NM_005030, intron 1 of 9) intron (NM_005030, intron 1 of 9) 1114 NM_005030 5347 Hs.592049 NM_005030 ENSG00000166851 PLK1 PLK|STPK13 polo-like kinase 1 protein-coding 1119 chr8 23033781 23036296 + 0 NA Intergenic Intergenic -13495 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding 1914 chr18 8115140 8118985 + 0 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 249970 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 RP11-789C17.3 - uncharacterized LOC100192426 ncRNA 3039 chr4 102138396 102140670 + 0 NA intron (NM_000944, intron 1 of 13) intron (NM_000944, intron 1 of 13) 22496 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA mir-8066 ncRNA 2756 chr11 57116390 57118230 + 0 NA exon (NM_002559, exon 7 of 12) exon (NM_002559, exon 7 of 12) 11469 NM_002559 5024 Hs.146738 NM_002559 P2RX3 P2X3 purinergic receptor P2X, ligand-gated ion channel, 3 protein-coding 1705 chr14 31342862 31344563 + 0 NA promoter-TSS (NM_004086) promoter-TSS (NM_004086) -29 NM_001135058 1690 Hs.21016 XM_005267388 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9 cochlin protein-coding 1919 chr18 21125094 21127117 + 0 NA intron (NM_000271, intron 11 of 24) AluSx1|SINE|Alu 40476 NM_000271 4864 Hs.715623 XM_005258277 ENSG00000141458 NPC1 NPC Niemann-Pick disease, type C1 protein-coding 1938 chr19 16448095 16451644 + 0 NA Intergenic Intergenic 14218 NM_016270 10365 Hs.744182 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel-like factor 2 protein-coding 3000 chr3 101892371 101894839 + 0 NA Intergenic Intergenic 233902 NR_026934 152225 Hs.376768 XR_241470 ENSG00000214407 LOC152225 RP11-221J22.1|RP11-221J22.2 uncharacterized LOC152225 ncRNA 915 chr4 74888207 74890948 + 0 NA Intergenic Intergenic 14913 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 chemokine (C-X-C motif) ligand 3 protein-coding 3107 chr7 11700188 11701883 + 0 NA intron (NM_015204, intron 1 of 26) L1MEg|LINE|L1 170789 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2978 chr3 146030059 146032551 + 0 NA Intergenic L1MA9|LINE|L1 -62339 NM_001128306 57088 Hs.477869 XM_005247654 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 1586 chr11 68868939 68871860 + 0 NA Intergenic Intergenic 54049 NM_139075 219931 Hs.131851 XM_005273824 TPCN2 SHEP10|TPC2 two pore segment channel 2 protein-coding 1986 chr2 42417087 42424682 + 0 NA intron (NM_001145076, intron 1 of 21) AluJb|SINE|Alu 24394 NM_019063 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 1456 chr10 34760052 34767856 + 0 NA intron (NM_001184790, intron 3 of 22) intron (NM_001184790, intron 3 of 22) 340299 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2606 chr9 127151575 127157111 + 0 NA intron (NM_002799, intron 5 of 7) intron (NM_002799, intron 5 of 7) 23409 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 404 chr15 69590476 69592957 + 0 NA intron (NM_017705, intron 1 of 8) CpG 422 NM_017705 54852 Hs.591096 XM_005254494 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member V protein-coding 516 chr17 15821604 15823047 + 0 NA Intergenic Intergenic -25906 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 1813 chr16 10672289 10675273 + 0 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) 758 NM_001424 2013 Hs.531561 XM_005255165 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 2004 chr2 16573316 16576591 + 0 NA Intergenic Intergenic 272181 NM_030797 81553 Hs.467769 XM_005262629 ENSG00000197872 FAM49A - family with sequence similarity 49, member A protein-coding 2060 chr2 235900242 235912517 + 0 NA intron (NM_014521, intron 2 of 5) intron (NM_014521, intron 2 of 5) 45751 NM_014521 23677 Hs.516777 XM_005246069 ENSG00000130147 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 1551 chr11 13030133 13035591 + 0 NA 3' UTR (NM_001080521, exon 1 of 1) 3' UTR (NM_001080521, exon 1 of 1) 1892 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 702 chr2 47581031 47582626 + 0 NA Intergenic Intergenic -9615 NR_110208 101927043 Hs.515976 XR_244999 ENSG00000234690 AC073283.4 - uncharacterized LOC101927043 ncRNA 2297 chr5 39098734 39105271 + 0 NA Intergenic AluJb|SINE|Alu -27492 NM_152756 253260 Hs.407926 XM_005248277 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR, complex 2 protein-coding 2163 chr3 148994226 148998088 + 0 NA Intergenic L1ME3C|LINE|L1 55102 NM_001184723 116441 Hs.22026 NM_001184723 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 2214 chr4 72414534 72418095 + 0 NA intron (NM_003759, intron 17 of 22) intron (NM_003759, intron 17 of 22) 211544 NM_003759 8671 Hs.5462 XM_005265703 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|pNBC solute carrier family 4 (sodium bicarbonate cotransporter), member 4 protein-coding 2904 chr19 10528205 10532323 + 0 NA intron (NM_001243121, intron 3 of 16) CpG -1069 NM_001111307 5141 Hs.89901 XM_005259932 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A, cAMP-specific protein-coding 2346 chr6 26248866 26251475 + 0 NA TTS (NM_021018) TTS (NM_021018) 665 NM_021018 8968 Hs.247814 NM_021018 ENSG00000256316 HIST1H3F H3/i|H3FI histone cluster 1, H3f protein-coding 2195 chr3 133170086 133173301 + 0 NA intron (NM_003571, intron 4 of 6) intron (NM_003571, intron 4 of 6) 52854 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2, phakinin protein-coding 561 chr17 64561055 64562126 + 0 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -221600 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 2112 chr22 38613436 38617247 + 0 NA TTS (NM_001195072) TTS (NM_001195072) 16314 NM_001161573 23764 Hs.517617 NM_001161572 ENSG00000185022 MAFF U-MAF|hMafF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F protein-coding 2555 chr8 99952573 99954627 + 0 NA intron (NM_001256312, intron 1 of 12) CpG 1199 NM_001256312 6788 Hs.492333 XM_005251033 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 2221 chr4 126647958 126652554 + 0 NA Intergenic Intergenic 221842 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 2982 chr3 15650714 15653055 + 0 NA intron (NM_001281725, intron 1 of 3) MLT1H|LTR|ERVL-MaLR 8408 NM_001281725 686 Hs.517830 XM_005265414 ENSG00000169814 BTD - biotinidase protein-coding 357 chr14 69161376 69161967 + 0 NA Intergenic Intergenic 98960 NM_004926 677 Hs.707091 XM_005268025 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 1307 chr9 44534497 44535547 + 0 NA Intergenic L1P4b|LINE|L1 147635 NR_046203 643648 Hs.742595 NR_046203 LINC01189 RP11-211N8.7 long intergenic non-protein coding RNA 1189 ncRNA 3236 chr9 84279422 84282778 + 0 NA intron (NM_005077, intron 4 of 19) intron (NM_005077, intron 4 of 19) 22496 NM_005077 7088 Hs.689805 XM_005252151 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 1812 chr16 10613430 10615493 + 0 NA Intergenic Intergenic 60078 NM_001424 2013 Hs.531561 XM_005255165 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 1941 chr19 40464425 40468812 + 0 NA Intergenic AluSp|SINE|Alu -10294 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome (prosome, macropain) 26S subunit, ATPase, 4 protein-coding 2826 chr15 53902841 53905458 + 0 NA intron (NM_182758, intron 16 of 19) intron (NM_182758, intron 16 of 19) -70849 NR_102335 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 1769 chr15 58722822 58728375 + 0 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) 1423 NM_000236 3990 Hs.654472 XM_005254372 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase, hepatic protein-coding 2475 chr8 128217028 128239567 + 0 NA intron (NR_108049, intron 1 of 1) intron (NR_108049, intron 1 of 1) 3216 NR_108049 100507056 Hs.343864 XR_108886 ENSG00000247844 CCAT1 - colon cancer associated transcript 1 (non-protein coding) ncRNA 455 chr16 15528053 15530554 + 0 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) 978 NM_033201 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 1875 chr17 25797006 25801678 + 0 NA intron (NM_014238, intron 1 of 20) intron (NM_014238, intron 1 of 20) 306 NM_014238 8844 Hs.133534 NM_014238 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 1673 chr12 133092673 133094915 + 0 NA intron (NM_001142641, intron 2 of 16) intron (NM_001142641, intron 2 of 16) 26637 NM_001142641 57666 Hs.656668 XM_003403652 ENSG00000112787 FBRSL1 - fibrosin-like 1 protein-coding 2132 chr22 42340634 42343852 + 0 NA intron (NM_001002876, intron 2 of 4) intron (NM_001002876, intron 2 of 4) 905 NM_001002876 79019 Hs.208912 XM_005261736 ENSG00000100162 CENPM C22orf18|CENP-M|PANE1|bK250D10.2 centromere protein M protein-coding 297 chr12 96235811 96236962 + 0 NA Intergenic AluJb|SINE|Alu -16323 NM_003095 6636 Hs.105465 NM_003095 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 963 chr5 55642448 55643863 + 0 NA Intergenic LTR29|LTR|ERV1 -113969 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 3181 chr8 66641597 66646043 + 0 NA intron (NM_002603, intron 7 of 12) intron (NM_002603, intron 7 of 12) 57509 NM_002603 5150 Hs.527119 NM_001242318 PDE7A HCP1|PDE7|RP11-707M3.3 phosphodiesterase 7A protein-coding 2612 chr9 37475506 37478508 + 0 NA Intergenic Intergenic -8925 NM_001282766 64425 Hs.733126 XM_005251547 ENSG00000137054 POLR1E PAF53|PRAF1|RP11-405L18.3 polymerase (RNA) I polypeptide E, 53kDa protein-coding 2031 chr2 158315886 158318388 + 0 NA Intergenic Intergenic -16533 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 2272 chr5 39190133 39201081 + 0 NA intron (NM_199335, intron 2 of 17) intron (NM_199335, intron 2 of 17) 24073 NM_001465 2533 Hs.691768 NM_001243093 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130 FYN binding protein protein-coding 1889 chr17 44871346 44874424 + 0 NA intron (NM_030753, intron 1 of 4) intron (NM_030753, intron 1 of 4) 23241 NM_030753 7473 Hs.745220 NM_030753 ENSG00000108379 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 2692 chr1 101095105 101097841 + 0 NA intron (NR_038914, intron 3 of 4) L2c|LINE|L2 16087 NR_038914 100128787 Hs.536050 NR_038914 RP11-84O12.4 - uncharacterized LOC100128787 ncRNA 2646 chrX 195001 199515 + 0 NA promoter-TSS (NM_018390).2 promoter-TSS (NM_018390).2 -803 NM_018390 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 10 chr1 114655138 114655582 + 0 NA intron (NM_001270805, intron 3 of 7) intron (NM_001270805, intron 3 of 7) 39702 NM_205848 148281 Hs.736999 XM_005270496 ENSG00000134207 SYT6 sytVI synaptotagmin VI protein-coding 980 chr5 92280389 92282705 + 0 NA Intergenic Intergenic 624952 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1596 chr11 76534295 76536602 + 0 NA Intergenic Intergenic -36469 NM_018367 55331 Hs.23862 XM_005274086 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 550 chr17 49474446 49476780 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 137716 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit (SSU) processome component homolog (yeast) protein-coding 2083 chr20 46191519 46195797 + 0 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 63057 NM_001174088 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 2697 chr1 114664834 114666675 + 0 NA intron (NM_001270805, intron 3 of 7) intron (NM_001270805, intron 3 of 7) 29308 NM_205848 148281 Hs.736999 XM_005270496 ENSG00000134207 SYT6 sytVI synaptotagmin VI protein-coding 2097 chr21 16581408 16585054 + 0 NA Intergenic MamRep1161|DNA|TcMar -146105 NM_003489 8204 Hs.155017 XM_005261062 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 1081 chr7 47662335 47663522 + 0 NA non-coding (NR_108090, exon 2 of 4) non-coding (NR_108090, exon 2 of 4) 1391 NR_108090 101929086 Hs.563487 XR_242177 ENSG00000236078 AC095067.1 - uncharacterized LOC101929086 ncRNA 1651 chr12 76143615 76147146 + 0 NA Intergenic L1ME4a|LINE|L1 -239962 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 958 chr5 39194272 39198279 + 0 NA intron (NM_199335, intron 2 of 17) intron (NM_199335, intron 2 of 17) 23405 NM_001465 2533 Hs.691768 NM_001243093 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130 FYN binding protein protein-coding 1569 chr11 57199078 57205507 + 0 NA Intergenic MLT2F|LTR|ERVL -7239 NM_017611 29015 Hs.99962 XM_005273942 ENSG00000134802 SLC43A3 EEG1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43, member 3 protein-coding 1736 chr14 103600974 103606812 + 0 NA TTS (NM_006291) TTS (NM_006291) 11229 NM_006291 7127 Hs.736562 XM_005268034 ENSG00000185215 TNFAIP2 B94|EXOC3L3 tumor necrosis factor, alpha-induced protein 2 protein-coding 592 chr18 12740878 12742384 + 0 NA Intergenic L1MB7|LINE|L1 38644 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome (prosome, macropain) assembly chaperone 2 protein-coding 2542 chr8 62639811 62651961 + 0 NA Intergenic L1MD2|LINE|L1 18539 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 2123 chr22 30503202 30505950 + 0 NA intron (NM_152510, intron 5 of 10) L2c|LINE|L2 28123 NM_152510 150280 Hs.120391 XM_005261364 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 1978 chr19 54023442 54025231 + 0 NA 5' UTR (NM_018555, exon 1 of 7) 5' UTR (NM_018555, exon 1 of 7) 159 NM_018555 55422 Hs.185674 XM_005259040 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 2364 chr6 73782395 73787473 + 0 NA intron (NM_001160133, intron 3 of 14) intron (NM_001160133, intron 3 of 14) 68303 NR_046621 100873997 Hs.743196 NR_046621 ENSG00000229154 KCNQ5-AS1 RP11-257K9.2 KCNQ5 antisense RNA 1 ncRNA 1640 chr12 50417103 50420231 + 0 NA intron (NM_013277, intron 1 of 18) intron (NM_013277, intron 1 of 18) 640 NM_001126104 29127 Hs.505469 XM_005268811 ENSG00000161800 RACGAP1 CYK4|HsCYK-4|ID-GAP|MgcRacGAP Rac GTPase activating protein 1 protein-coding 173 chr11 19262743 19263612 + 0 NA promoter-TSS (NM_024680) promoter-TSS (NM_024680) -10 NM_001256371 79733 Hs.523526 NM_001256371 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 530 chr17 35291555 35294110 + 0 NA Intergenic CpG -1940 NM_005568 3975 Hs.443727 NM_005568 ENSG00000132130 LHX1 LIM-1|LIM1 LIM homeobox 1 protein-coding 66 chr1 149817967 149827750 + 0 NA promoter-TSS (NR_036461) promoter-TSS (NR_036461) 230 NM_003516 8337 Hs.530461 NM_003516 HIST2H2AA3 H2A|H2A.2|H2A/O|H2A/q|H2AFO|H2a-615|HIST2H2AA histone cluster 2, H2aa3 protein-coding 2709 chr1 209582450 209584072 + 0 NA Intergenic Intergenic -18907 NM_001104548 642587 Hs.510543 XM_005273225 MIR205HG LINC00510 MIR205 host gene (non-protein coding) protein-coding 3067 chr5 75764078 75770046 + 0 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) 67982 NM_006633 10788 Hs.291030 XM_005248409 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 2675 chr1 3411181 3414666 + 0 NA intron (NM_001409, intron 29 of 36) intron (NM_001409, intron 29 of 36) 41776 NM_014448 27237 Hs.87435 XM_005244740 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor (GEF) 16 protein-coding 470 chr16 24988888 24990116 + 0 NA intron (NM_001006634, intron 2 of 19) intron (NM_001006634, intron 2 of 19) 37197 NM_018054 55114 Hs.373793 XM_005255413 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 2026 chr2 133194903 133198390 + 0 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 22499 NM_001508 2863 Hs.744392 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 1524 chr11 34699700 34705328 + 0 NA Intergenic MIRb|SINE|MIR 48503 NM_001206616 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 3130 chr7 139337425 139339659 + 0 NA intron (NM_001113239, intron 2 of 14) AluSx1|SINE|Alu 129868 NM_001080511 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2, member L protein-coding 2360 chr6 56263335 56265834 + 0 NA intron (NR_046940, intron 2 of 5) LTR22|LTR|ERVK -152206 NM_030820 81578 Hs.47629 XM_005249431 ENSG00000124749 COL21A1 COLA1L|dJ682J15.1|dJ708F5.1 collagen, type XXI, alpha 1 protein-coding 793 chr21 16583606 16584423 + 0 NA Intergenic Intergenic -146888 NM_003489 8204 Hs.155017 XM_005261062 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 1205 chr8 41386630 41388341 + 0 NA intron (NM_032336, intron 1 of 7) intron (NM_032336, intron 1 of 7) 760 NM_032336 84296 Hs.656996 XM_005273659 ENSG00000147536 GINS4 SLD5 GINS complex subunit 4 (Sld5 homolog) protein-coding 1287 chr8 143762118 143764306 + 0 NA intron (NR_033343, intron 2 of 2) intron (NR_033343, intron 2 of 2) 1338 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 1696 chr14 54573264 54576943 + 0 NA Intergenic Intergenic -151549 NM_001202 652 Hs.68879 XM_005268015 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 3168 chr8 41674367 41676496 + 0 NA intron (NM_001142446, intron 1 of 42) MER34-int|LTR|ERV1 -20291 NM_020476 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 2403 chr7 32655212 32659589 + 0 NA intron (NR_036680, intron 12 of 16) intron (NR_036680, intron 12 of 16) 101380 NR_036680 100129460 Hs.633705 NR_036680 DPY19L1P1 - DPY19L1 pseudogene 1 pseudo 654 chr19 45416576 45417324 + 0 NA promoter-TSS (NM_001645) promoter-TSS (NM_001645) -971 NM_001645 341 Hs.737668 XM_005258855 ENSG00000130208 APOC1 - apolipoprotein C-I protein-coding 2261 chr4 142485883 142489900 + 0 NA Intergenic Tigger3|DNA|TcMar-Tigger -69858 NM_172175 3600 Hs.602618 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 283 chr12 76144135 76145773 + 0 NA Intergenic Intergenic -239536 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 156 chr11 57225761 57229451 + 0 NA promoter-TSS (NM_178570) promoter-TSS (NM_178570) -404 NM_178570 349667 Hs.603388 XM_005273973 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor-like 2 protein-coding 59 chr1 110518104 110519175 + 0 NA Intergenic Intergenic -8748 NM_006621 10768 Hs.743973 XM_005270388 ENSG00000168710 AHCYL1 DCAL|IRBIT|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 2091 chr20 52521852 52525853 + 0 NA Intergenic Intergenic -31604 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1971 chr19 40440074 40445100 + 0 NA Intergenic AluJr|SINE|Alu -2054 NM_003890 8857 Hs.111732 XM_005259365 ENSG00000090920 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 2358 chr6 45622225 45626210 + 0 NA Intergenic Intergenic 233903 NM_001278478 860 Hs.535845 NM_001015051 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 1226 chr8 67088644 67089969 + 0 NA exon (NM_000756, exon 2 of 2) exon (NM_000756, exon 2 of 2) 1540 NM_000756 1392 Hs.75294 NM_000756 ENSG00000147571 CRH CRF corticotropin releasing hormone protein-coding 2498 chr8 17555968 17559964 + 0 NA intron (NM_001001924, intron 6 of 14) AluSq2|SINE|Alu -2720 NM_020749 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 1256 chr8 126290084 126291300 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -151871 NM_025195 10221 Hs.444947 XM_005250752 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 1949 chr19 1188477 1193496 + 0 NA Intergenic AluSx|SINE|Alu -14812 NM_000455 6794 Hs.515005 XM_005259617 ENSG00000118046 STK11 LKB1|PJS|hLKB1 serine/threonine kinase 11 protein-coding 2247 chr4 95554639 95566991 + 0 NA intron (NM_001011513, intron 8 of 12) intron (NM_001011513, intron 8 of 12) -118313 NM_001203 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 1744 chr15 36467728 36471350 + 0 NA Intergenic L2a|LINE|L2 250482 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 - microRNA 4510 ncRNA 1853 chr17 9550667 9552925 + 0 NA intron (NM_001267576, intron 1 of 14) L2c|LINE|L2 2942 NM_001267576 124739 Hs.709621 XM_005256441 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 864 chr3 44035992 44039186 + 0 NA Intergenic CpG -118115 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1 microRNA 138-1 ncRNA 2913 chr2 84473971 84476030 + 0 NA Intergenic Intergenic -42806 NR_003663 388965 Hs.744643 NR_003663 ENSG00000182814 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 219 chr11 68847237 68848566 + 0 NA intron (NM_139075, intron 17 of 24) intron (NM_139075, intron 17 of 24) 31551 NM_139075 219931 Hs.131851 XM_005273824 TPCN2 SHEP10|TPC2 two pore segment channel 2 protein-coding 1016 chr6 26048616 26049945 + 0 NA Intergenic LTR8|LTR|ERV1 3641 NM_003531 8352 Hs.248176 NM_003531 ENSG00000196532 HIST1H3C H3.1|H3/c|H3FC histone cluster 1, H3c protein-coding 2480 chr8 129161664 129172002 + 0 NA Intergenic AluSx3|SINE|Alu 4471 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 2300 chr5 55614067 55616733 + 0 NA Intergenic Intergenic -86214 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 799 chr21 43146690 43147976 + 0 NA Intergenic Intergenic 10737 NR_024028 54089 Hs.98186 NR_024028 ENSG00000232401 LINC00112 C21orf22|NCRNA00112 long intergenic non-protein coding RNA 112 ncRNA 1170 chr8 25030404 25034530 + 0 NA Intergenic Intergenic -9820 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 925 chr4 95938912 95941161 + 0 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) 22653 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 1896 chr17 64488413 64491474 + 0 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 191017 NM_002737 5578 Hs.708867 XM_005257502 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PRKACA protein kinase C, alpha protein-coding 390 chr15 40453145 40454890 + 0 NA intron (NM_001211, intron 1 of 22) intron (NM_001211, intron 1 of 22) 807 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 2895 chr19 34649669 34653052 + 0 NA Intergenic AluJb|SINE|Alu -11992 NM_015578 26065 Hs.744009 XM_005258719 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 2368 chr6 105402888 105407993 + 0 NA intron (NM_001004317, intron 1 of 3) intron (NM_001004317, intron 1 of 3) 517 NM_001004317 389421 Hs.23616 XM_005266975 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B (C. elegans) protein-coding 1042 chr6 73789331 73790024 + 0 NA intron (NM_001160133, intron 5 of 14) intron (NM_001160133, intron 5 of 14) 63560 NR_046621 100873997 Hs.743196 NR_046621 ENSG00000229154 KCNQ5-AS1 RP11-257K9.2 KCNQ5 antisense RNA 1 ncRNA 1515 chr11 114160328 114172128 + 0 NA promoter-TSS (NM_006169) promoter-TSS (NM_006169) -307 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 1686 chr13 109147316 109148917 + 0 NA Intergenic CpG -100384 NM_015011 23026 Hs.656587 NM_001198950 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3 myosin XVI protein-coding 38 chr1 36788452 36789792 + 0 NA intron (NM_018166, intron 1 of 2) CpG-886 633 NM_018166 55194 Hs.87016 XM_005270998 ENSG00000142694 EVA1B C1orf78|FAM176B|RP11-268J15.2 eva-1 homolog B (C. elegans) protein-coding 1955 chr19 4580166 4582081 + 0 NA Intergenic CpG -21352 NM_032108 10501 Hs.465642 NM_032108 ENSG00000167680 SEMA6B SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B protein-coding 196 chr11 61594393 61597643 + 0 NA exon (NM_004265, exon 1 of 12) exon (NM_004265, exon 1 of 12) 513 NM_004265 9415 Hs.502745 NM_001281501 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 945 chr5 10457353 10458592 + 0 NA intron (NM_031916, intron 3 of 4) intron (NM_031916, intron 3 of 4) 15998 NM_001201466 83853 Hs.381089 NM_001201466 ENSG00000145491 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1-like protein-coding 1169 chr8 25027863 25028387 + 0 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -14162 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2784 chr12 50705567 50706951 + 0 NA Intergenic MER63B|DNA|hAT-Blackjack -28906 NM_016357 51474 Hs.525419 NM_001113546 ENSG00000050405 LIMA1 EPLIN|SREBP3 LIM domain and actin binding 1 protein-coding 206 chr11 63860650 63863173 + 0 NA intron (NM_014067, intron 3 of 10) AluSg7|SINE|Alu -9451 NM_013280 23769 Hs.584876 XM_005273861 ENSG00000126500 FLRT1 RP11-21A7A.2 fibronectin leucine rich transmembrane protein 1 protein-coding 118 chr10 34762054 34763274 + 0 NA intron (NM_001184790, intron 3 of 22) MER66B|LTR|ERV1 341589 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 959 chr5 39760337 39761108 + 0 NA Intergenic Intergenic 240189 NR_104632 101926940 Hs.738168 XR_241760 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 1674 chr13 42400255 42403670 + 0 NA intron (NM_001009814, intron 14 of 25) intron (NM_001009814, intron 14 of 25) 133259 NM_001009814 23078 Hs.368282 NM_001009814 ENSG00000102763 VWA8 KIAA0564 von Willebrand factor A domain containing 8 protein-coding 3194 chr8 89378265 89380981 + 0 NA Intergenic Intergenic -39906 NM_005941 4325 Hs.546267 XM_005250921 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 358 chr14 69162095 69162765 + 0 NA Intergenic Intergenic 98201 NM_004926 677 Hs.707091 XM_005268025 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 331 chr13 114808549 114811327 + 0 NA intron (NM_007368, intron 3 of 23) intron (NM_007368, intron 3 of 23) 88157 NM_007368 22821 Hs.593075 XM_005266195 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 1065 chr7 6334277 6335930 + 0 NA Intergenic Intergenic -22861 NM_004227 9265 Hs.487479 XM_005249905 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3 cytohesin 3 protein-coding 1659 chr12 104763689 104767763 + 0 NA Intergenic Intergenic 68216 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 2746 chr11 16901398 16904060 + 0 NA intron (NM_175058, intron 3 of 22) intron (NM_175058, intron 3 of 22) 133234 NM_175058 144100 Hs.12332 XM_005252801 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing, family A member 7 protein-coding 737 chr2 191705270 191708466 + 0 NA Intergenic Intergenic -38679 NM_001256310 2744 Hs.737608 XM_005246467 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 767 chr20 37541837 37543079 + 0 NA intron (NM_015568, intron 10 of 10) MER92B|LTR|ERV1 -12497 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83, member D protein-coding 3037 chr4 95850554 95854149 + 0 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -65032 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2228 chr4 5365856 5369419 + 0 NA intron (NM_018401, intron 4 of 11) intron (NM_018401, intron 4 of 11) -159246 NM_005750 10141 Hs.177972 NM_005750 ENSG00000082929 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 2070 chr20 46078058 46089121 + 0 NA Intergenic AluJr4|SINE|Alu -47012 NM_001174087 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 2173 chr3 32432561 32434552 + 0 NA exon (NM_138410, exon 1 of 5) exon (NM_138410, exon 1 of 5) 393 NM_181472 112616 Hs.440494 XM_005264841 ENSG00000153551 CMTM7 CKLFSF7 CKLF-like MARVEL transmembrane domain containing 7 protein-coding 1020 chr6 26232303 26236369 + 0 NA TTS (NM_005320) TTS (NM_005320) 880 NM_005320 3007 Hs.136857 NM_005320 ENSG00000124575 HIST1H1D H1.3|H1D|H1F3|H1s-2 histone cluster 1, H1d protein-coding 805 chr22 45072289 45073838 + 0 NA 5' UTR (NM_001198721, exon 1 of 10) 5' UTR (NM_001198721, exon 1 of 10) 375 NM_001017530 55615 Hs.102336 XM_005261672 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 (renal) protein-coding 84 chr10 102104883 102110002 + 0 NA intron (NM_005063, intron 1 of 5) CpG 670 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS stearoyl-CoA desaturase (delta-9-desaturase) protein-coding 437 chr16 69450865 69452715 + 0 NA Intergenic Intergenic -6708 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5|RP11-140H17.1 cytochrome b5 type B (outer mitochondrial membrane) protein-coding 194 chr11 59322846 59325793 + 0 NA Intergenic Intergenic 38312 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 2749 chr11 27380156 27382631 + 0 NA intron (NM_030771, intron 1 of 5) L2c|LINE|L2 3402 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 1768 chr15 57270469 57273305 + 0 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 61054 NM_207038 6938 Hs.511504 XM_005254613 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|bHLHb20 transcription factor 12 protein-coding 220 chr11 68888691 68892147 + 0 NA Intergenic Intergenic 48611 NR_104161 338694 Hs.564235 XR_247248 ENSG00000261070 RP11-554A11.8 - uncharacterized LOC338694 ncRNA 1312 chr9 93799510 93800843 + 0 NA Intergenic Intergenic 37238 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 2395 chr7 11765470 11774392 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 101893 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2365 chr6 73788153 73793079 + 0 NA intron (NM_001160133, intron 5 of 14) intron (NM_001160133, intron 5 of 14) 62621 NR_046621 100873997 Hs.743196 NR_046621 ENSG00000229154 KCNQ5-AS1 RP11-257K9.2 KCNQ5 antisense RNA 1 ncRNA 1021 chr6 26249283 26251202 + 0 NA TTS (NM_021018) TTS (NM_021018) 593 NM_021018 8968 Hs.247814 NM_021018 ENSG00000256316 HIST1H3F H3/i|H3FI histone cluster 1, H3f protein-coding 1263 chr8 129077060 129078441 + 0 NA intron (NR_003367, intron 4 of 7) intron (NR_003367, intron 4 of 7) 16352 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 934 chr4 142485980 142487648 + 0 NA Intergenic Tigger3|DNA|TcMar-Tigger -70935 NM_172175 3600 Hs.602618 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 1989 chr2 69940966 69949074 + 0 NA Intergenic Intergenic -24107 NM_001153 307 Hs.422986 XM_005264277 ENSG00000196975 ANXA4 ANX4|PIG28|ZAP36 annexin A4 protein-coding 948 chr5 14177060 14181193 + 0 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 35297 NM_007118 7204 Hs.130031 XR_241714 ENSG00000038382 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 2160 chr3 128416883 128418174 + 0 NA Intergenic Intergenic -27451 NM_004637 7879 Hs.744853 XM_005247751 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 572 chr17 76337262 76340259 + 0 NA Intergenic MIRb|SINE|MIR 17400 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 2450 chr8 23031224 23036789 + 0 NA Intergenic Intergenic -12463 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding 1398 chr1 15910300 15912031 + 0 NA intron (NM_024758, intron 1 of 6) CpG 440 NM_024758 79814 Hs.461532 NM_024758 AGMAT - agmatine ureohydrolase (agmatinase) protein-coding 226 chr11 69974234 69975150 + 0 NA intron (NM_018043, intron 10 of 25) intron (NM_018043, intron 10 of 25) 43176 NR_030691 55107 Hs.503074 NM_018043 ENSG00000131620 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1, calcium activated chloride channel protein-coding 527 chr17 21001805 21003708 + 0 NA Intergenic Intergenic -27485 NM_015510 25979 Hs.386989 XM_005256595 ENSG00000109016 DHRS7B SDR32C1 dehydrogenase/reductase (SDR family) member 7B protein-coding 1430 chr1 192518948 192521107 + 0 NA Intergenic Intergenic -24830 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|IER1|IR20 regulator of G-protein signaling 1 protein-coding 1145 chr8 17433880 17435634 + 0 NA 5' UTR (NM_006207, exon 2 of 7) 5' UTR (NM_006207, exon 2 of 7) 815 NM_006207 5157 Hs.458573 XM_005273528 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet-derived growth factor receptor-like protein-coding 1870 chr17 76480014 76481794 + 0 NA promoter-TSS (NR_102401) promoter-TSS (NR_102401) -88 NR_102401 100996295 Hs.638630 NR_102401 DNAH17-AS1 RP11-559N14.5 DNAH17 antisense RNA 1 ncRNA 2549 chr8 83480202 83482344 + 0 NA Intergenic L1MEc|LINE|L1 -726752 NM_022133 64089 Hs.492121 XM_005251282 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 1448 chr10 13735297 13753673 + 0 NA intron (NM_018027, intron 13 of 24) intron (NM_018027, intron 13 of 24) 115546 NM_003675 8559 Hs.729158 XM_005252634 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 3229 chr8 142253915 142256792 + 0 NA intron (NM_001286646, intron 1 of 7) intron (NM_001286646, intron 1 of 7) 9375 NM_001286646 57210 Hs.372492 XM_005251001 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 2466 chr8 62666077 62705703 + 0 NA Intergenic MIR|SINE|MIR 58543 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 62 chr1 114694923 114696095 + 0 NA promoter-TSS (NM_205848) promoter-TSS (NM_205848) -447 NM_205848 148281 Hs.736999 XM_005270496 ENSG00000134207 SYT6 sytVI synaptotagmin VI protein-coding 833 chr22 44454459 44456182 + 0 NA intron (NM_001243386, intron 1 of 11) intron (NM_001243386, intron 1 of 11) -9677 NM_001243385 29780 Hs.475074 XM_005261593 ENSG00000188677 PARVB CGI-56 parvin, beta protein-coding 3146 chr8 17573455 17578419 + 0 NA intron (NM_001001925, intron 3 of 13) intron (NM_001001925, intron 3 of 13) 3793 NM_001001931 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2743 chr11 57243957 57248166 + 0 NA Intergenic Intergenic 18051 NM_178570 349667 Hs.603388 XM_005273973 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor-like 2 protein-coding 1472 chr10 33402765 33406248 + 0 NA Intergenic AluSg|SINE|Alu -157213 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 1573 chr11 61890406 61894069 + 0 NA intron (NM_001040694, intron 1 of 18) MIR|SINE|MIR 792 NM_020238 3619 Hs.142179 NM_001040694 ENSG00000149503 INCENP - inner centromere protein antigens 135/155kDa protein-coding 548 chr17 46620236 46621218 + 0 NA promoter-TSS (NR_102279) promoter-TSS (NR_102279) -986 NR_102279 100874362 Hs.171806 XR_243624 ENSG00000230148 HOXB-AS1 - HOXB cluster antisense RNA 1 ncRNA 2020 chr2 69919859 69924348 + 0 NA Intergenic AluJb|SINE|Alu -47024 NM_001153 307 Hs.422986 XM_005264277 ENSG00000196975 ANXA4 ANX4|PIG28|ZAP36 annexin A4 protein-coding 2575 chr8 128976141 128987144 + 0 NA intron (NR_003367, intron 2 of 7) intron (NR_003367, intron 2 of 7) 8763 NR_031610 100302161 NR_031610 ENSG00000221771 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 1110 chr7 128074548 128076722 + 0 NA Intergenic L1MEd|LINE|L1 -20249 NM_001098786 29923 Hs.706124 NM_001098786 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet-associated protein-coding 2622 chr9 84148854 84151970 + 0 NA Intergenic Intergenic 153184 NM_005077 7088 Hs.689805 XM_005252151 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 2204 chr3 171618984 171620976 + 0 NA Intergenic Intergenic 58841 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 1999 chr2 232044742 232047495 + 0 NA Intergenic AluSz6|SINE|Alu -17176 NM_025139 80210 Hs.471610 NM_001271466 ENSG00000135931 ARMC9 ARM|KU-MEL-1 armadillo repeat containing 9 protein-coding 2799 chr13 95772829 95778956 + 0 NA intron (NM_001105515, intron 19 of 20) AluSx|SINE|Alu 177795 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 1772 chr15 65113956 65118859 + 0 NA exon (NM_001286497, exon 2 of 13) exon (NM_001286497, exon 2 of 13) 1460 NM_025049 80119 Hs.112160 XM_005254691 ENSG00000140451 PIF1 C15orf20|PIF PIF1 5'-to-3' DNA helicase protein-coding 418 chr15 90117622 90120081 + 0 NA promoter-TSS (NM_152259) promoter-TSS (NM_152259) 33 NM_152259 90381 Hs.441708 XM_005254985 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1-interacting checkpoint and replication regulator protein-coding 2324 chr5 175907901 175909940 + 0 NA intron (NM_014613, intron 2 of 10) L1M4|LINE|L1 33564 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 933 chr4 126655431 126657646 + 0 NA Intergenic Intergenic 228124 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 783 chr20 52421421 52423628 + 0 NA Intergenic L2b|LINE|L2 69724 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 2217 chr4 75573332 75591808 + 0 NA Intergenic Intergenic 101941 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 1357 chrY 147711 148946 + 0 NA non-coding (NR_028057, exon 2 of 9).2 non-coding (NR_028057, exon 2 of 9).2 267 NM_018390 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 2333 chr6 2864950 2867549 + 0 NA intron (NR_033851, intron 1 of 1) LTR56|LTR|ERV1 10495 NR_033851 221756 Hs.8162 NM_182544 MGC39372 - serpin peptidase inhibitor, clade B (ovalbumin), member 9 pseudogene pseudo 348 chr14 42938782 42939923 + 0 NA Intergenic Intergenic 862588 NM_152447 145581 Hs.136893 XM_005267368 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1152 chr8 17749399 17751045 + 0 NA intron (NM_201552, intron 1 of 8) intron (NM_201552, intron 1 of 8) 2691 NM_147203 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 789 chr21 32929935 32932295 + 0 NA intron (NM_003253, intron 1 of 28) CpG 175 NM_003253 7074 Hs.517228 XM_005261037 ENSG00000156299 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 49 chr1 98494326 98495111 + 0 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 16189 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 2046 chr2 204622902 204625938 + 0 NA Intergenic L1MA3|LINE|L1 53222 NM_001243077 940 Hs.443123 XM_005246969 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 2052 chr2 221088886 221096415 + 0 NA Intergenic Intergenic -321364 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 2967 chr22 24609028 24611620 + 0 NA Intergenic Intergenic 30786 NM_004121 2687 Hs.437156 XM_005261557 ENSG00000099998 GGT5 GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 2868 chr17 20704650 20705921 + 0 NA Intergenic AluY|SINE|Alu -66461 NR_104185 440416 Hs.661076 XR_243605 RP11-344E13.3 - uncharacterized LOC440416 ncRNA 993 chr5 150283936 150285279 + 0 NA promoter-TSS (NM_052860) promoter-TSS (NM_052860) -62 NM_052860 91975 Hs.134885 NM_001172831 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 627 chr19 5170302 5174344 + 0 NA Intergenic AluSq|SINE|Alu 168491 NM_002850 5802 Hs.744928 XM_005259600 ENSG00000105426 PTPRS PTPSIGMA protein tyrosine phosphatase, receptor type, S protein-coding 1090 chr7 76017979 76019244 + 0 NA TTS (NM_080744) TTS (NM_080744) -8230 NM_007155 7784 Hs.656137 NM_001110354 ENSG00000188372 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 (sperm receptor) protein-coding 1308 chr9 44538202 44541455 + 0 NA Intergenic Intergenic 152441 NR_046203 643648 Hs.742595 NR_046203 LINC01189 RP11-211N8.7 long intergenic non-protein coding RNA 1189 ncRNA 2117 chr22 21809072 21813464 + 0 NA Intergenic L2a|LINE|L2 -10191 NM_001207052 645426 Hs.645547 XM_005276703 TMEM191C AC023490.1 transmembrane protein 191C protein-coding 715 chr2 101469383 101472520 + 0 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 34338 NM_002518 4862 Hs.705895 XM_005263953 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 1934 chr19 5164516 5178050 + 0 NA Intergenic AluJr|SINE|Alu 169531 NM_002850 5802 Hs.744928 XM_005259600 ENSG00000105426 PTPRS PTPSIGMA protein tyrosine phosphatase, receptor type, S protein-coding 2503 chr8 19458578 19461237 + 0 NA 5' UTR (NM_001130518, exon 1 of 10) 5' UTR (NM_001130518, exon 1 of 10) 149 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 2201 chr3 160223243 160226283 + 0 NA intron (NM_002268, intron 15 of 16) intron (NM_002268, intron 15 of 16) 8261 NR_003001 677767 Hs.675953 NR_003001 SCARNA7 U90 small Cajal body-specific RNA 7 ncRNA 1916 chr18 12635795 12641931 + 0 NA intron (NM_020148, intron 1 of 15) MSTA|LTR|ERVL-MaLR 17868 NM_001128627 56907 Hs.515283 XM_005258121 ENSG00000134278 SPIRE1 Spir-1 spire-type actin nucleation factor 1 protein-coding 23 chr1 8197307 8198774 + 0 NA Intergenic Intergenic -111647 NM_018948 54206 Hs.605445 XM_005263477 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 1722 chr14 63936524 63939282 + 0 NA intron (NM_001282179, intron 2 of 13) intron (NM_001282179, intron 2 of 13) 37053 NM_001282182 5529 Hs.594347 XM_005267828 PPP2R5E - protein phosphatase 2, regulatory subunit B', epsilon isoform protein-coding 388 chr15 37202860 37203321 + 0 NA intron (NR_051953, intron 8 of 11) AluSx3|SINE|Alu -24356 NR_024264 145845 Hs.302693 NR_024264 LOC145845 - uncharacterized LOC145845 ncRNA 364 chr14 102018636 102019993 + 0 NA non-coding (NR_002770, exon 1 of 1) non-coding (NR_002770, exon 1 of 1) 2699 NR_002770 64150 Hs.745484 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 3069 chr5 78047173 78050224 + 0 NA Intergenic AluSz|SINE|Alu -104050 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 1425 chr1 110516852 110519777 + 0 NA Intergenic L1ME4a|LINE|L1 -9073 NM_006621 10768 Hs.743973 XM_005270388 ENSG00000168710 AHCYL1 DCAL|IRBIT|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 950 chr5 16866874 16867427 + 0 NA intron (NM_012334, intron 2 of 40) intron (NM_012334, intron 2 of 40) 69235 NM_012334 4651 Hs.481720 XM_005248306 ENSG00000145555 MYO10 - myosin X protein-coding 2680 chr1 32153957 32158872 + 0 NA intron (NM_001856, intron 20 of 70) intron (NM_001856, intron 20 of 70) 13354 NM_001856 1307 Hs.368921 XM_005270481 ENSG00000084636 COL16A1 447AA collagen, type XVI, alpha 1 protein-coding 2957 chr21 32897659 32899692 + 0 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 32615 NM_003253 7074 Hs.517228 XM_005261037 ENSG00000156299 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 1445 chr10 33416955 33433445 + 0 NA Intergenic Intergenic -177907 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 1678 chr13 47236705 47241634 + 0 NA intron (NM_015116, intron 2 of 18) intron (NM_015116, intron 2 of 18) 111873 NM_015116 23143 Hs.507971 NM_001164211 ENSG00000136141 LRCH1 CHDC1|NP81 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding 1845 chr16 81174369 81175756 + 0 NA exon (NM_001278425, exon 20 of 32) exon (NM_001278425, exon 20 of 32) 39905 NM_001278423 114780 Hs.413525 NM_001076780 ENSG00000166473 PKD1L2 PC1L2 polycystic kidney disease 1-like 2 protein-coding 1025 chr6 27790544 27793491 + 0 NA exon (NM_021968, exon 1 of 1) exon (NM_021968, exon 1 of 1) 114 NM_021968 8363 Hs.278483 NM_021968 ENSG00000197238 HIST1H4J H4/e|H4F2iv|H4FE|dJ160A22.2 histone cluster 1, H4j protein-coding 3083 chr6 32871630 32875934 + 0 NA Intergenic Charlie1|DNA|hAT-Charlie 11829 NR_037177 100294145 Hs.559456 NR_037177 LOC100294145 - uncharacterized LOC100294145 ncRNA 3073 chr5 131844166 131846713 + 0 NA Intergenic L1M4c|LINE|L1 -18974 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 1992 chr2 145782523 145788207 + 0 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 359831 NR_033870 401014 Hs.742290 NR_033870 TEX41 AC074093.1|DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 2478 chr8 129113263 129125175 + 0 NA Intergenic AluSc|SINE|Alu -43143 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 1842 chr16 70455392 70459450 + 0 NA intron (NM_006927, intron 1 of 6) AluSx|SINE|Alu 15570 NM_006927 6483 Hs.368611 XM_005256114 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 1466 chr10 15241017 15245003 + 0 NA Intergenic Intergenic -32315 NM_004808 9397 Hs.60339 XM_005252642 NMT2 - N-myristoyltransferase 2 protein-coding 485 chr16 69096726 69097624 + 0 NA intron (NM_024562, intron 17 of 17) AluY|SINE|Alu -42292 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 2340 chr6 148453541 148456091 + 0 NA Intergenic AluSx1|SINE|Alu -208913 NM_015278 23328 Hs.193133 XM_005266874 ENSG00000111961 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 2143 chr3 42072698 42075366 + 0 NA Intergenic Intergenic -58714 NM_001042646 22906 Hs.535711 XM_005264956 ENSG00000182606 TRAK1 MILT1|OIP106 trafficking protein, kinesin binding 1 protein-coding 778 chr20 47339028 47340631 + 0 NA intron (NM_020820, intron 5 of 39) intron (NM_020820, intron 5 of 39) 104591 NM_020820 57580 Hs.153310 XM_005260471 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 720 chr2 127976108 127978214 + 0 NA Intergenic CpG -13818 NM_001001665 339761 Hs.407639 XM_005263658 ENSG00000186684 CYP27C1 - cytochrome P450, family 27, subfamily C, polypeptide 1 protein-coding 1270 chr8 130884174 130885096 + 0 NA intron (NM_001256763, intron 4 of 12) intron (NM_001256763, intron 4 of 12) 67483 NM_001256763 51571 Hs.126941 XM_005250963 ENSG00000153310 FAM49B L1 family with sequence similarity 49, member B protein-coding 2449 chr8 19473562 19487121 + 0 NA intron (NR_024040, intron 1 of 9) L1MEg|LINE|L1 -20285 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 460 chr16 15604640 15605430 + 0 NA intron (NM_001142469, intron 1 of 5) intron (NM_001142469, intron 1 of 5) 8912 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 1645 chr12 62974416 62978680 + 0 NA intron (NM_001278469, intron 32 of 35) intron (NM_001278469, intron 32 of 35) 20666 NM_175895 283416 Hs.375881 NM_175895 ENSG00000221949 C12orf61 - chromosome 12 open reading frame 61 protein-coding 324 chr13 83675054 83675897 + 0 NA Intergenic Intergenic 781053 NM_001281503 114798 Hs.694617 NM_001281503 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK-like family, member 1 protein-coding 1389 chr1 8196813 8199185 + 0 NA Intergenic Intergenic -111606 NM_018948 54206 Hs.605445 XM_005263477 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 244 chr12 753483 755944 + 0 NA intron (NM_016533, intron 1 of 3) MIRb|SINE|MIR 18042 NM_016533 4815 Hs.656450 XM_005253689 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 637 chr19 17889254 17890396 + 0 NA intron (NM_015122, intron 20 of 28) L2a|LINE|L2 -16094 NM_014256 10331 Hs.657825 NM_014256 ENSG00000179913 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 2066 chr20 10330717 10342779 + 0 NA Intergenic Intergenic 75825 NM_018848 8195 Hs.741430 XM_005260853 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 3220 chr8 132958515 132959990 + 0 NA intron (NM_015137, intron 4 of 22) L1M4|LINE|L1 42896 NM_015137 23167 Hs.204564 XM_005250849 ENSG00000132294 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 2811 chr14 56280362 56282392 + 0 NA Intergenic Intergenic -17985 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 2679 chr1 28285439 28286965 + 0 NA promoter-TSS (NM_018053) promoter-TSS (NM_018053) -302 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 RP11-460I13.3|XRG8|hXkr8 XK, Kell blood group complex subunit-related family, member 8 protein-coding 752 chr20 46087392 46088851 + 0 NA Intergenic L1MC5|LINE|L1 -42480 NM_001174087 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 1232 chr8 89338781 89341146 + 0 NA promoter-TSS (NM_005941) promoter-TSS (NM_005941) -246 NM_005941 4325 Hs.546267 XM_005250921 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 2899 chr19 4359949 4362448 + 0 NA 3' UTR (NM_001199943, exon 9 of 9) 3' UTR (NM_001199943, exon 9 of 9) 17674 NM_032868 84954 Hs.321689 XM_005259663 ENSG00000008382 MPND - MPN domain containing protein-coding 3045 chr4 175285389 175288070 + 0 NA Intergenic Intergenic -58217 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 2941 chr2 200295996 200298662 + 0 NA intron (NM_001172509, intron 3 of 10) intron (NM_001172509, intron 3 of 10) 25490 NM_001172509 23314 Hs.516617 XM_005246396 ENSG00000119042 SATB2 - SATB homeobox 2 protein-coding 379 chr15 30463451 30464364 + 0 NA Intergenic Intergenic -24332 NR_026771 26082 Hs.652128 NR_026771 ENSG00000225930 DKFZP434L187 AC026150.5 uncharacterized LOC26082 ncRNA 1607 chr11 122510903 122517077 + 0 NA Intergenic Intergenic -12408 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 1386 chr1 3418318 3422878 + 0 NA intron (NM_001409, intron 17 of 36) intron (NM_001409, intron 17 of 36) 49451 NM_014448 27237 Hs.87435 XM_005244740 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor (GEF) 16 protein-coding 1536 chr11 114176900 114180499 + 0 NA intron (NM_006169, intron 2 of 2) L2b|LINE|L2 12164 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 1639 chr12 42372321 42378142 + 0 NA Intergenic Intergenic 163442 NM_001099650 283464 Hs.259347 NM_001099650 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 1035 chr6 35693602 35696675 + 0 NA intron (NR_027117, intron 9 of 9) intron (NR_027117, intron 9 of 9) 1222 NM_001145775 2289 Hs.407190 NM_001145775 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FK506 binding protein 5 protein-coding 2617 chr9 44532524 44536656 + 0 NA Intergenic L1P4b|LINE|L1 147203 NR_046203 643648 Hs.742595 NR_046203 LINC01189 RP11-211N8.7 long intergenic non-protein coding RNA 1189 ncRNA 452 chr16 14638493 14639237 + 0 NA intron (NM_001134477, intron 21 of 23) AluJb|SINE|Alu 85263 NM_002582 5073 Hs.253197 XM_005255341 ENSG00000140694 PARN DAN poly(A)-specific ribonuclease protein-coding 579 chr17 79013432 79015045 + 0 NA intron (NM_006340, intron 1 of 14) intron (NM_006340, intron 1 of 14) 5291 NM_006340 10458 Hs.128316 XM_005256942 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1-associated protein 2 protein-coding 295 chr12 95717790 95718609 + 0 NA Intergenic AluSx1|SINE|Alu 14500 NR_037456 100500802 NR_037456 ENSG00000265917 MIR3685 - microRNA 3685 ncRNA 1894 chr17 61509065 61511817 + 0 NA 3' UTR (NM_001017917, exon 6 of 6) 3' UTR (NM_001017917, exon 6 of 6) 7766 NM_001017917 1534 Hs.355264 XM_005257090 ENSG00000008283 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 535 chr17 39051228 39052746 + 0 NA Intergenic Intergenic -10492 NM_019010 54474 Hs.84905 XM_005257464 ENSG00000171431 KRT20 CD20|CK-20|CK20|K20|KRT21 keratin 20 protein-coding 1618 chr12 81328801 81335015 + 0 NA promoter-TSS (NM_004664) promoter-TSS (NM_004664) -214 NM_004664 8825 Hs.144333 XM_005269212 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|TIP-33|VELI1 lin-7 homolog A (C. elegans) protein-coding 3138 chr8 138198087 138200898 + 0 NA Intergenic Intergenic 1309573 NM_015912 51059 Hs.126024 XM_005250928 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135, member B protein-coding 3136 chr8 108116615 108118197 + 0 NA Intergenic L1M5|LINE|L1 -334934 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin-binding Rho activating protein protein-coding 77 chr1 211847808 211849963 + 0 NA promoter-TSS (NM_002497) promoter-TSS (NM_002497) 87 NM_002497 4751 Hs.153704 XM_005273147 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|RP67 NIMA-related kinase 2 protein-coding 683 chr2 16573902 16575904 + 0 NA Intergenic Intergenic 272231 NM_030797 81553 Hs.467769 XM_005262629 ENSG00000197872 FAM49A - family with sequence similarity 49, member A protein-coding 2260 chr4 126654033 126658760 + 0 NA Intergenic MIR3|SINE|MIR 227982 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 541 chr17 40576903 40577768 + 0 NA Intergenic Intergenic -1997 NM_012232 284119 Hs.437191 XM_005257241 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|cavin-1 polymerase I and transcript release factor protein-coding 1215 chr8 54796719 54799558 + 0 NA intron (NR_104579, intron 1 of 3) AluY|SINE|Alu 4706 NR_104579 8601 Hs.368733 XM_005251323 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 2995 chr3 78906027 78908648 + 0 NA intron (NM_133631, intron 2 of 28) intron (NM_133631, intron 2 of 28) 161272 NM_001145845 6091 Hs.744218 NM_001145845 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 1712 chr14 35859314 35861546 + 0 NA Intergenic MIRb|SINE|MIR 13530 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding 2344 chr6 12591002 12595693 + 0 NA Intergenic Intergenic -123690 NM_001242648 221692 Hs.436996 XM_005248933 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 765 chr20 33208865 33210214 + 0 NA intron (NM_080476, intron 6 of 11) intron (NM_080476, intron 6 of 11) 55550 NM_080476 128869 Hs.253319 XM_005260279 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis, class U protein-coding 2552 chr8 94546555 94548883 + 0 NA intron (NR_033858, intron 6 of 10) L2c|LINE|L2 164942 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 RP11-163D8.1 long intergenic non-protein coding RNA 535 ncRNA 2521 chr8 29498113 29500750 + 0 NA Intergenic Intergenic 106194 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 897 chr3 177544903 177546045 + 0 NA Intergenic Intergenic 385765 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 RP11-335L9.1 long intergenic non-protein coding RNA 578 ncRNA 312 chr12 117029267 117030873 + 0 NA Intergenic Intergenic 32884 NM_001085481 643246 Hs.506947 NM_001085481 ENSG00000171471 MAP1LC3B2 ATG8G microtubule-associated protein 1 light chain 3 beta 2 protein-coding 1628 chr12 9871475 9876963 + 0 NA TTS (NM_172004) TTS (NM_172004) 11676 NM_172004 160365 Hs.734740 NM_001253750 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin-like 1 protein-coding 3219 chr8 130157206 130158870 + 0 NA Intergenic L1ME3C|LINE|L1 95448 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 RP11-1057N3.1 long intergenic non-protein coding RNA 977 ncRNA 2435 chr8 8126201 8129429 + 0 NA Intergenic Intergenic 41723 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 1002 chr6 27787098 27788689 + 0 NA Intergenic MER34A1|LTR|ERV1 -4010 NM_021968 8363 Hs.278483 NM_021968 ENSG00000197238 HIST1H4J H4/e|H4F2iv|H4FE|dJ160A22.2 histone cluster 1, H4j protein-coding 237 chr11 114177857 114178948 + 0 NA intron (NM_006169, intron 2 of 2) L2b|LINE|L2 11867 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 2584 chr8 134193570 134198474 + 0 NA Intergenic Intergenic -7260 NM_003882 8840 Hs.492974 NM_001204869 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 370 chr14 103564736 103568244 + 0 NA promoter-TSS (NM_001077594) promoter-TSS (NM_001077594) 9 NM_001077594 91828 Hs.37712 XM_005268210 ENSG00000205436 EXOC3L4 C14orf73|RP11-736N17.8 exocyst complex component 3-like 4 protein-coding 2722 chr10 30969712 30973143 + 0 NA Intergenic Intergenic -9776 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 2371 chr6 151406153 151408641 + 0 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) -153737 NM_005100 9590 Hs.371240 XM_005267233 ENSG00000131016 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 2519 chr8 29350191 29352141 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -142899 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 2923 chr2 39673803 39677248 + 0 NA intron (NR_037875, intron 1 of 5) intron (NR_037875, intron 1 of 5) 10968 NR_037875 728730 Hs.655344 XR_244956 ENSG00000231312 AC007246.3 - uncharacterized LOC728730 ncRNA 2610 chr9 4901062 4902672 + 0 NA Intergenic L1PA7|LINE|L1 51570 NR_029836 406894 NR_029836 MIR101-2 MIRN101-2 microRNA 101-2 ncRNA 567 chr17 73683944 73686282 + 0 NA intron (NM_013260, intron 3 of 10) intron (NM_013260, intron 3 of 10) 21714 NM_013260 29115 Hs.655088 XM_005257256 ENSG00000161526 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 416 chr15 78304776 78305718 + 0 NA exon (NM_144572, exon 9 of 13) exon (NM_144572, exon 9 of 13) -18680 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 2950 chr2 238214335 238215805 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 107780 NM_057167 1293 Hs.233240 XM_005246065 ENSG00000163359 COL6A3 - collagen, type VI, alpha 3 protein-coding 3212 chr8 122165758 122167908 + 0 NA Intergenic Intergenic -342524 NM_021021 6641 Hs.46701 XM_005251031 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding 3115 chr7 47271451 47273110 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 349462 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 914 chr4 74760732 74761594 + 0 NA Intergenic MER50|LTR|ERV1 26054 NR_046035 2919 Hs.708652 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) protein-coding 380 chr15 32658212 32659311 + 0 NA Intergenic Intergenic 36732 NM_001282493 653125 XM_001724746 GOLGA8K - golgin A8 family, member K protein-coding 100 chr10 22540184 22541765 + 0 NA promoter-TSS (NR_038921) promoter-TSS (NR_038921) -27 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 3206 chr8 106861274 106862819 + 0 NA Intergenic L1PB1|LINE|L1 -420360 NM_018002 55074 Hs.701892 XM_005250993 ENSG00000164830 OXR1 TLDC3 oxidation resistance 1 protein-coding 965 chr5 55651383 55653603 + 0 NA Intergenic Intergenic -123307 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 300 chr12 109634903 109635821 + 0 NA intron (NM_001093, intron 16 of 51) L2b|LINE|L2 58160 NM_001093 32 Hs.234898 XM_005253876 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 1279 chr8 134847752 134848534 + 0 NA Intergenic Intergenic -263960 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1439 chr1 222718117 222722374 + 0 NA intron (NM_024746, intron 1 of 8) intron (NM_024746, intron 1 of 8) 1199 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 2974 chr22 46852745 46854859 + 0 NA intron (NM_014246, intron 2 of 34) intron (NM_014246, intron 2 of 34) 79265 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 CDHF9|FMI2|HFMI2|ME2 cadherin, EGF LAG seven-pass G-type receptor 1 protein-coding 2079 chr20 37541105 37543856 + 0 NA intron (NM_015568, intron 10 of 10) MER92B|LTR|ERV1 -12475 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83, member D protein-coding 286 chr12 76344819 76348666 + 0 NA Intergenic Intergenic 78814 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 1395 chr1 12492193 12499648 + 0 NA intron (NM_018156, intron 64 of 68) intron (NM_018156, intron 64 of 68) -71380 NR_003025 677885 Hs.721005 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 2405 chr7 44009485 44011111 + 0 NA intron (NR_003655, intron 9 of 15) intron (NR_003655, intron 9 of 15) -30191 NM_175064 285955 Hs.645483 XM_005249718 ENSG00000136206 SPDYE1 Ringo1|SPDYE|WBSCR19 speedy/RINGO cell cycle regulator family member E1 protein-coding 1075 chr7 37070535 37072808 + 0 NA intron (NM_014800, intron 15 of 21) intron (NM_014800, intron 15 of 21) 34270 NR_104120 100861514 Hs.627775 NR_104120 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 2426 chr7 116414702 116419886 + 0 NA intron (NM_001127500, intron 15 of 20) intron (NM_001127500, intron 15 of 20) -85269 NM_006136 830 Hs.446123 XR_242266 CAPZA2 CAPPA2|CAPZ capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 800 chr21 44143846 44145062 + 0 NA intron (NM_001001569, intron 2 of 15) intron (NM_001001569, intron 2 of 15) 70592 NM_001001572 5152 Hs.473927 XM_005261131 ENSG00000160191 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 2232 chr4 15894585 15897281 + 0 NA Intergenic L1ME3A|LINE|L1 44430 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 3125 chr7 81253181 81255780 + 0 NA Intergenic Intergenic 144972 NM_001010933 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 1365 chr1 3423888 3429215 + 0 NA exon (NM_001409, exon 11 of 37) exon (NM_001409, exon 11 of 37) 50803 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 2432 chr7 151144777 151146284 + 0 NA Intergenic CpG -8431 NM_144727 155051 Hs.647104 XM_005249952 ENSG00000127377 CRYGN - crystallin, gamma N protein-coding 1407 chr1 44402098 44403794 + 0 NA TTS (NM_057091) TTS (NM_057091) 3954 NM_057090 9048 Hs.632404 NM_001136215 ENSG00000117407 ARTN ENOVIN|EVN|NBN artemin protein-coding 496 chr16 84632616 84638898 + 0 NA intron (NM_021149, intron 2 of 3) intron (NM_021149, intron 2 of 3) 15945 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin-like 1 (Dictyostelium) protein-coding 2829 chr15 36692780 36695509 + 0 NA Intergenic Intergenic -177668 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 605 chr19 3717439 3719302 + 0 NA intron (NM_001267560, intron 1 of 20) AluJb|SINE|Alu -3327 NM_001267561 27134 Hs.25527 XM_005259539 ENSG00000105289 TJP3 ZO-3|ZO3 tight junction protein 3 protein-coding 2987 chr3 45174985 45176389 + 0 NA intron (NM_178181, intron 1 of 3) AluY|SINE|Alu 12227 NM_022842 64866 Hs.476093 XM_005265404 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 1779 chr15 71746056 71750389 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -91319 NM_001286429 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 2581 chr8 131205220 131210049 + 0 NA intron (NM_018482, intron 5 of 29) AluJo|SINE|Alu 101145 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 1568 chr11 57123088 57130420 + 0 NA intron (NM_002559, intron 8 of 11) LTR33|LTR|ERVL 20913 NM_002559 5024 Hs.146738 NM_002559 P2RX3 P2X3 purinergic receptor P2X, ligand-gated ion channel, 3 protein-coding 607 chr19 9878796 9879823 + 0 NA 5' UTR (NM_001077624, exon 1 of 6) 5' UTR (NM_001077624, exon 1 of 6) 101 NM_001077624 162993 Hs.665717 XM_005259771 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 1807 chr16 84646190 84656535 + 0 NA intron (NM_021149, intron 1 of 3) CpG-9574 340 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin-like 1 (Dictyostelium) protein-coding 2902 chr19 9238042 9240010 + 0 NA Intergenic Intergenic -1400 NM_001001958 390883 Hs.553775 NM_001001958 ENSG00000170920 OR7G3 OST085 olfactory receptor, family 7, subfamily G, member 3 protein-coding 1699 chr14 102022182 102026021 + 0 NA Intergenic Intergenic -2088 NR_002770 64150 Hs.745484 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 42 chr1 55776274 55777531 + 0 NA Intergenic Intergenic 85588 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 - microRNA 4422 ncRNA 759 chr20 10308270 10310038 + 0 NA Intergenic LTR84b|LTR|ERVL 103419 NM_018848 8195 Hs.741430 XM_005260853 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 3093 chr6 134303483 134306190 + 0 NA intron (NM_004865, intron 4 of 6) intron (NM_004865, intron 4 of 6) 30535 NM_004865 9519 Hs.486507 NM_001253676 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TBP-like 1 protein-coding 2508 chr8 23038274 23041197 + 0 NA Intergenic AluY|SINE|Alu -18192 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding 1228 chr8 67521905 67525605 + 0 NA intron (NM_001080416, intron 1 of 15) MER20|DNA|hAT-Charlie 1725 NM_001144755 4603 Hs.445898 XM_005251251 ENSG00000185697 MYBL1 A-MYB|AMYB v-myb avian myeloblastosis viral oncogene homolog-like 1 protein-coding 235 chr11 101741372 101741961 + 0 NA Intergenic Intergenic -44080 NM_020802 57562 Hs.156352 XM_005271627 ENSG00000110318 KIAA1377 - KIAA1377 protein-coding 1073 chr7 32622915 32624338 + 0 NA 3' UTR (NM_015060, exon 16 of 16) 3' UTR (NM_015060, exon 16 of 16) 88450 NM_015060 23080 Hs.128056 XM_005249668 ENSG00000105778 AVL9 KIAA0241 AVL9 homolog (S. cerevisiase) protein-coding 2291 chr5 23324211 23326222 + 0 NA Intergenic MLT1E2|LTR|ERVL-MaLR -182508 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 MEISETZ|MSBP3|PFM6|PRMD9|ZNF899 PR domain containing 9 protein-coding 2591 chr8 142025838 142030596 + 0 NA Intergenic Intergenic -16805 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 2187 chr3 87137703 87139585 + 0 NA non-coding (NR_047469, exon 1 of 2) non-coding (NR_047469, exon 1 of 2) 214 NR_104153 100846978 Hs.570649 NR_047469 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 1931 chr18 68116387 68118175 + 0 NA Intergenic Intergenic 161144 NM_004232 9306 Hs.44439 XM_005266783 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 694 chr2 38325162 38326691 + 0 NA Intergenic Intergenic -22603 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450, family 1, subfamily B, polypeptide 1 protein-coding 2844 chr16 15564145 15568140 + 0 NA intron (NM_033201, intron 1 of 5) L1MD2|LINE|L1 -29981 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 816 chr22 24642788 24643898 + 0 NA Intergenic Intergenic -2233 NM_001099782 2687 Hs.437156 XM_005261557 ENSG00000099998 GGT5 GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 1103 chr7 95128377 95131452 + 0 NA intron (NM_145872, intron 2 of 2) intron (NM_145872, intron 2 of 2) 14701 NM_145872 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 3031 chr4 69792465 69793570 + 0 NA Intergenic Intergenic 24492 NM_024743 79799 Hs.122583 NM_024743 ENSG00000135220 UGT2A3 - UDP glucuronosyltransferase 2 family, polypeptide A3 protein-coding 3148 chr8 17617156 17618981 + 0 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) -37984 NM_001166393 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2244 chr4 86116406 86118112 + 0 NA Intergenic L1PA6|LINE|L1 229288 NR_015359 404201 Hs.720920 XR_244628 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 3159 chr8 27763112 27769867 + 0 NA intron (NM_173833, intron 5 of 8) intron (NM_173833, intron 5 of 8) -22856 NR_036249 100422828 NR_036249 MIR4287 - microRNA 4287 ncRNA 296 chr12 96230020 96232914 + 0 NA Intergenic AluJr|SINE|Alu -21242 NM_003095 6636 Hs.105465 NM_003095 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 265 chr12 50418127 50420033 + 0 NA intron (NM_013277, intron 1 of 18) CpG 227 NM_001126104 29127 Hs.505469 XM_005268811 ENSG00000161800 RACGAP1 CYK4|HsCYK-4|ID-GAP|MgcRacGAP Rac GTPase activating protein 1 protein-coding 1062 chr7 2859408 2861998 + 0 NA intron (NM_007353, intron 1 of 3) intron (NM_007353, intron 1 of 3) -5810 NM_001282441 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 3112 chr7 11863517 11865674 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 7229 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 3169 chr8 48273675 48277140 + 0 NA intron (NR_104581, intron 5 of 16) AluSz|SINE|Alu 101937 NM_001080394 23514 Hs.381058 XM_005251189 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 171 chr11 13030312 13031739 + 0 NA promoter-TSS (NM_001080521) promoter-TSS (NM_001080521) 55 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 1700 chr14 103479662 103482901 + 0 NA intron (NM_006035, intron 1 of 36) intron (NM_006035, intron 1 of 36) 42461 NM_006035 9578 Hs.654634 XM_005268227 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta (DMPK-like) protein-coding 2609 chr9 4836884 4840080 + 0 NA intron (NM_005772, intron 5 of 8) intron (NM_005772, intron 5 of 8) -1287 NM_001286701 10171 Hs.194121 XM_005251337 ENSG00000120158 RCL1 RNAC|RPCL1 RNA terminal phosphate cyclase-like 1 protein-coding 445 chr16 4329126 4330378 + 0 NA Intergenic AluSx1|SINE|Alu -6751 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding 2131 chr22 41907278 41910004 + 0 NA intron (NM_001098, intron 4 of 17) intron (NM_001098, intron 4 of 17) 31852 NM_138338 171568 Hs.712617 XM_005261385 ENSG00000100413 POLR3H RPC22.9|RPC8 polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein-coding 2687 chr1 98469027 98470581 + 0 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 41103 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 1339 chrX 29552873 29554341 + 0 NA intron (NM_014271, intron 5 of 10) LTR16A2|LTR|ERVL -680068 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 melanoma antigen family B, 2 protein-coding 2338 chr6 45676914 45680214 + 0 NA Intergenic Intergenic 226770 NR_045674 53405 Hs.734348 NM_001114086 ENSG00000112782 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 2012 chr2 40661017 40663499 + 0 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -4814 NM_001252624 6546 Hs.744988 XM_005264512 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 3201 chr8 97283318 97284378 + 0 NA intron (NM_014754, intron 1 of 12) L1MC4a|LINE|L1 9681 NM_014754 9791 Hs.292579 NM_014754 PTDSS1 PSS1|PSSA phosphatidylserine synthase 1 protein-coding 582 chr17 79988359 79990546 + 0 NA promoter-TSS (NM_005052) promoter-TSS (NM_005052) -80 NM_005052 5881 Hs.45002 XM_005256390 ENSG00000169750 RAC3 - ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) protein-coding 3257 chrX 133755734 133757059 + 0 NA intron (NM_021796, intron 1 of 2) intron (NM_021796, intron 1 of 2) 36117 NM_021796 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2L placenta-specific 1 protein-coding 1884 chr17 40001936 40003576 + 0 NA intron (NM_152467, intron 3 of 4) AluSc8|SINE|Alu 8713 NM_152467 317719 Hs.127510 XM_005257273 ENSG00000161594 KLHL10 SPGF11 kelch-like family member 10 protein-coding 2120 chr22 24551173 24554457 + 0 NA intron (NM_012295, intron 29 of 36) intron (NM_012295, intron 29 of 36) -24629 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 1858 chr17 39005081 39017140 + 0 NA Intergenic AluY|SINE|Alu 12352 NM_000223 3859 Hs.66739 NM_000223 ENSG00000187242 KRT12 K12 keratin 12 protein-coding 557 chr17 57877633 57878502 + 0 NA intron (NM_030938, intron 7 of 11) Tigger3b|DNA|TcMar-Tigger -40560 NR_029493 406991 Hs.444569 NR_029493 ENSG00000199004 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 718 chr2 121104148 121104665 + 0 NA intron (NM_002193, intron 1 of 1) CpG-15454 687 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin, beta B protein-coding 2147 chr3 12463745 12468725 + 0 NA intron (NM_015869, intron 6 of 6) MIRb|SINE|MIR -59696 NM_001145393 80746 Hs.335550 XM_005265495 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L TSEN2 tRNA splicing endonuclease subunit protein-coding 1581 chr11 66669367 66676987 + 0 NA intron (NM_000920, intron 2 of 21) L2|LINE|L2 2163 NM_022172 5091 Hs.89890 XM_005274030 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 1507 chr10 134256077 134262337 + 0 NA exon (NM_173541, exon 2 of 3) exon (NM_173541, exon 2 of 3) 493 NM_173541 170393 Hs.375059 NM_173541 C10orf91 RP11-432J24.4|bA432J24.4 chromosome 10 open reading frame 91 protein-coding 1604 chr11 114150709 114152942 + 0 NA Intergenic Intergenic -14710 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 2726 chr10 33590874 33592318 + 0 NA intron (NM_001244972, intron 2 of 16) intron (NM_001244972, intron 2 of 16) 32237 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 441 chr16 1202327 1206026 + 0 NA intron (NM_001005407, intron 2 of 33) CpG-8532 935 NM_001005407 8912 Hs.459642 XM_005255652 ENSG00000196557 CACNA1H CACNA1HB|Cav3.2|ECA6|EIG6 calcium channel, voltage-dependent, T type, alpha 1H subunit protein-coding 868 chr3 46150246 46151508 + 0 NA Intergenic Intergenic -81898 NM_005283 2829 Hs.248116 NM_001024644 ENSG00000173578 XCR1 CCXCR1|GPR5 chemokine (C motif) receptor 1 protein-coding 672 chr2 3651987 3653871 + 0 NA promoter-TSS (NM_001255989) promoter-TSS (NM_001255989) -713 NM_001255988 78989 Hs.735715 XM_005263853 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin sub-family member 11 protein-coding 1140 chr8 8173466 8175398 + 0 NA TTS (NM_001080826) TTS (NM_001080826) 64825 NM_001080826 157285 Hs.657673 XM_005272369 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 983 chr5 96528301 96529652 + 0 NA Intergenic L1PB1|LINE|L1 -9971 NM_001159749 55781 Hs.27021 NM_001159749 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 275 chr12 63151340 63157468 + 0 NA intron (NM_020700, intron 4 of 9) HERVH-int|LTR|ERV1 156938 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 2035 chr2 165386397 165389824 + 0 NA intron (NM_004490, intron 3 of 13) intron (NM_004490, intron 3 of 13) 90250 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 197 chr11 61890685 61893643 + 0 NA intron (NM_001040694, intron 1 of 18) intron (NM_001040694, intron 1 of 18) 719 NM_020238 3619 Hs.142179 NM_001040694 ENSG00000149503 INCENP - inner centromere protein antigens 135/155kDa protein-coding 2208 chr3 174125711 174128305 + 0 NA Intergenic L2a|LINE|L2 -450103 NM_207015 254827 Hs.660010 XM_005247264 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 1731 chr14 102017564 102022163 + 0 NA non-coding (NR_002770, exon 1 of 1) non-coding (NR_002770, exon 1 of 1) 2150 NR_002770 64150 Hs.745484 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 853 chr3 23709386 23711076 + 0 NA Intergenic Intergenic -137153 NM_182666 7324 Hs.164853 XM_005265431 ENSG00000170142 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 751 chr2 238199381 238201006 + 0 NA Intergenic Intergenic 122657 NM_057167 1293 Hs.233240 XM_005246065 ENSG00000163359 COL6A3 - collagen, type VI, alpha 3 protein-coding 1500 chr10 128083294 128088364 + 0 NA Intergenic L2c|LINE|L2 -8702 NM_021641 8038 Hs.741333 XM_005270188 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 1746 chr15 37200779 37208306 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -25808 NR_024264 145845 Hs.302693 NR_024264 LOC145845 - uncharacterized LOC145845 ncRNA 2167 chr3 8669271 8672916 + 0 NA intron (NM_001256748, intron 7 of 11) intron (NM_001256748, intron 7 of 11) 15391 NR_046358 51066 Hs.740735 XM_005265193 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 2136 chr22 44318913 44320773 + 0 NA exon (NM_025225, exon 1 of 9) exon (NM_025225, exon 1 of 9) 224 NM_025225 80339 Hs.654800 XM_005261754 ENSG00000100344 PNPLA3 ADPN|C22orf20|iPLA(2)epsilon patatin-like phospholipase domain containing 3 protein-coding 1980 chr19 54392153 54393578 + 0 NA intron (NM_002739, intron 3 of 17) intron (NM_002739, intron 3 of 17) 7398 NM_002739 5582 Hs.631564 XM_005259054 ENSG00000126583 PRKCG PKC-gamma|PKCC|PKCG|SCA14 protein kinase C, gamma protein-coding 2275 chr5 14104975 14107271 + 0 NA Intergenic Intergenic -37706 NM_007118 7204 Hs.130031 XR_241714 ENSG00000038382 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 2685 chr1 92269465 92271616 + 0 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 81296 NM_003243 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 3028 chr4 25692428 25694328 + 0 NA Intergenic MER11A|LTR|ERVK 35292 NM_001177999 10568 Hs.479372 XM_005248128 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 1295 chr9 46971913 46975158 + 0 NA Intergenic L1P4b|LINE|L1 144245 NR_046203 643648 Hs.742595 NR_046203 LINC01189 RP11-211N8.7 long intergenic non-protein coding RNA 1189 ncRNA 2832 chr15 36740775 36742439 + 0 NA Intergenic L2a|LINE|L2 -130205 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 677 chr2 165476903 165478837 + 0 NA 5' UTR (NM_004490, exon 1 of 14) 5' UTR (NM_004490, exon 1 of 14) 490 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 1111 chr7 151122445 151124770 + 0 NA Intergenic Intergenic 7118 NR_037468 100500835 NR_037468 MIR3907 - microRNA 3907 ncRNA 907 chr4 5366865 5368875 + 0 NA intron (NM_018401, intron 4 of 11) intron (NM_018401, intron 4 of 11) -159013 NM_005750 10141 Hs.177972 NM_005750 ENSG00000082929 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 3249 chrX 19012087 19014187 + 0 NA exon (NM_001184836, exon 26 of 27) exon (NM_001184836, exon 26 of 27) -10657 NM_000292 5256 Hs.54941 XM_005274548 ENSG00000044446 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase, alpha 2 (liver) protein-coding 2238 chr4 72471574 72476225 + 0 NA Intergenic Intergenic 176180 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP/GC|GRD3|VDBG|VDBP group-specific component (vitamin D binding protein) protein-coding 1868 chr17 76323488 76340591 + 0 NA Intergenic L3|LINE|CR1 24121 NM_003955 9021 Hs.703620 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 3154 chr8 19403967 19405988 + 0 NA intron (NR_024040, intron 2 of 9) THE1B|LTR|ERVL-MaLR 55079 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 590 chr18 11977752 11978665 + 0 NA Intergenic AluY|SINE|Alu -3219 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol(myo)-1(or 4)-monophosphatase 2 protein-coding 1210 chr8 41685260 41686715 + 0 NA intron (NM_001142446, intron 1 of 42) CpG -30847 NM_020476 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 664 chr19 54023546 54024797 + 0 NA promoter-TSS (NM_018555) promoter-TSS (NM_018555) -6 NM_018555 55422 Hs.185674 XM_005259040 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 1790 chr16 57922509 57934761 + 0 NA intron (NM_001286130, intron 31 of 32) L1MC4a|LINE|L1 76385 NM_001135639 1258 Hs.147062 XM_005255797 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 1878 chr17 37018634 37020860 + 0 NA Intergenic L2|LINE|L2 -6365 NR_073384 3927 Hs.741156 NM_001271608 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 2388 chr7 95139738 95141995 + 0 NA intron (NM_145872, intron 2 of 2) AluSp|SINE|Alu 25653 NM_145872 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 2938 chr2 190140224 190143144 + 0 NA Intergenic Intergenic -97079 NM_000393 1290 Hs.445827 XM_005246283 ENSG00000204262 COL5A2 - collagen, type V, alpha 2 protein-coding 2264 chr4 169058486 169061497 + 0 NA intron (NM_007193, intron 2 of 11) L1P4|LINE|L1 46303 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 2964 chr22 37730795 37734254 + 0 NA Intergenic AluSx1|SINE|Alu 54029 NM_013385 27128 Hs.170944 XM_005261567 ENSG00000100055 CYTH4 CYT4|DJ63G5.1|PSCD4 cytohesin 4 protein-coding 1690 chr13 114833388 114835375 + 0 NA intron (NM_007368, intron 2 of 23) intron (NM_007368, intron 2 of 23) 63714 NM_007368 22821 Hs.593075 XM_005266195 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 617 chr19 1154170 1156982 + 0 NA intron (NM_014963, intron 1 of 31) intron (NM_014963, intron 1 of 31) 18706 NM_014963 22904 Hs.408708 XM_005259519 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 79 chr1 222718907 222722081 + 0 NA intron (NM_024746, intron 1 of 8) intron (NM_024746, intron 1 of 8) 950 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 1420 chr1 92365196 92368843 + 0 NA intron (NM_001195684, intron 1 of 17) intron (NM_001195684, intron 1 of 17) 4540 NM_001195684 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 352 chr14 56218688 56220895 + 0 NA Intergenic Intergenic -13172 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 2502 chr8 19452977 19456986 + 0 NA intron (NM_001130518, intron 2 of 9) AluJo|SINE|Alu 5075 NM_001130518 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 2918 chr2 238092206 238094181 + 0 NA Intergenic Intergenic 99109 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 126 chr10 35023115 35023849 + 0 NA intron (NM_001184790, intron 1 of 22) AluY|SINE|Alu 80771 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 251 chr12 81329464 81332256 + 0 NA intron (NM_004664, intron 1 of 5) CpG 834 NM_004664 8825 Hs.144333 XM_005269212 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|TIP-33|VELI1 lin-7 homolog A (C. elegans) protein-coding 1034 chr6 34211428 34213303 + 0 NA intron (NM_145899, intron 5 of 5) intron (NM_145899, intron 5 of 5) 3915 NR_106893 102465502 NR_106893 MIR6835 hsa-mir-6835 microRNA mir-6835 ncRNA 1594 chr11 70227430 70229270 + 0 NA intron (NR_045286, intron 28 of 28) intron (NR_045286, intron 28 of 28) -16262 NM_001184740 2017 Hs.596164 XM_005273816 ENSG00000085733 CTTN EMS1 cortactin protein-coding 2803 chr13 111031740 111033679 + 0 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 39404 NR_107040 102465872 NR_107040 MIR8073 hsa-mir-8073 microRNA mir-8073 ncRNA 2875 chr17 62631109 62632905 + 0 NA intron (NM_022739, intron 1 of 18) L1MB7|LINE|L1 26379 NM_022739 64750 Hs.515011 XM_005257585 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 369 chr14 102780064 102781463 + 0 NA Intergenic CpG -2951 NM_001267827 55778 Hs.743359 XM_005267850 ENSG00000022976 ZNF839 C14orf131 zinc finger protein 839 protein-coding 1533 chr11 68885678 68895085 + 0 NA Intergenic Intergenic 48649 NR_104161 338694 Hs.564235 XR_247248 ENSG00000261070 RP11-554A11.8 - uncharacterized LOC338694 ncRNA 1548 chr11 10343230 10345643 + 0 NA intron (NR_103765, intron 1 of 3) intron (NR_103765, intron 1 of 3) 14576 NR_103765 100130460 Hs.738353 XR_242768 CAND1.11 - uncharacterized LOC100130460 ncRNA 651 chr19 42617340 42618842 + 0 NA intron (NM_001207025, intron 5 of 13) intron (NM_001207025, intron 5 of 13) 18534 NM_001207025 5452 Hs.147381 XM_005259009 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 176 chr11 27902360 27905089 + 0 NA Intergenic Intergenic -160119 NM_170731 627 Hs.502182 XM_005253060 ENSG00000176697 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 3145 chr8 17564532 17567920 + 0 NA intron (NM_001001924, intron 6 of 14) intron (NM_001001924, intron 6 of 14) -10980 NM_020749 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 947 chr5 14034766 14040129 + 0 NA Intergenic Intergenic -92858 NM_001369 1767 Hs.212360 XM_005248262 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 256 chr12 14412853 14414178 + 0 NA Intergenic Intergenic -105051 NM_018179 55729 Hs.591151 XM_005253423 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1823 chr16 15680572 15687906 + 0 NA Intergenic AluY|SINE|Alu 20713 NR_106761 102465252 NR_106761 MIR6506 hsa-mir-6506 microRNA mir-6506 ncRNA 2537 chr8 42066681 42068957 + 0 NA Intergenic AluSx3|SINE|Alu -2625 NM_000930 5327 Hs.491582 XM_005273530 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 2267 chr4 175627630 175635851 + 0 NA intron (NM_006529, intron 5 of 9) intron (NM_006529, intron 5 of 9) 118726 NM_001042543 8001 Hs.413099 XM_005263235 ENSG00000145451 GLRA3 - glycine receptor, alpha 3 protein-coding 2810 chr14 56215347 56217240 + 0 NA Intergenic LTR16C|LTR|ERVL -16670 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 920 chr4 86416585 86420207 + 0 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 22112 NM_001025616 83478 Hs.444229 XM_005263263 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 428 chr16 14466095 14468237 + 0 NA Intergenic Intergenic 64024 NR_029854 100126355 NR_029854 ENSG00000199130 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a microRNA 365a ncRNA 2305 chr5 73058868 73062213 + 0 NA intron (NM_001080479, intron 4 of 36) intron (NM_001080479, intron 4 of 36) -48803 NM_001244364 64283 Hs.482521 XM_005248568 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 887 chr3 148990466 148992375 + 0 NA Intergenic Intergenic -51588 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 72 chr1 200011450 200012372 + 0 NA promoter-TSS (NM_001276464) promoter-TSS (NM_001276464) -42 NM_001276464 2494 Hs.33446 XM_005245061 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 500 chr16 89640646 89642897 + 0 NA promoter-TSS (NM_153636) promoter-TSS (NM_153636) -405 NM_014427 27132 Hs.461775 XR_243505 ENSG00000178773 CPNE7 - copine VII protein-coding 1221 chr8 62698573 62699278 + 0 NA Intergenic Intergenic 71578 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 1496 chr10 112288793 112291869 + 0 NA Intergenic Intergenic 32706 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 1200 chr8 32182550 32186512 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -113731 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 1757 chr15 32658000 32659676 + 0 NA Intergenic Intergenic 36655 NM_001282493 653125 XM_001724746 GOLGA8K - golgin A8 family, member K protein-coding 918 chr4 75556266 75559025 + 0 NA Intergenic Intergenic 77016 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 1682 chr13 95619439 95621469 + 0 NA Intergenic CpG 255484 NR_046514 100507533 Hs.556071 XR_109146 SOX21-AS1 - SOX21 antisense RNA 1 (head to head) ncRNA 2781 chr12 25499622 25500981 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -96447 NM_033360 3845 Hs.505033 XM_005253365 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RASK2 Kirsten rat sarcoma viral oncogene homolog protein-coding 1413 chr1 64178577 64180658 + 0 NA Intergenic Intergenic -60073 NM_005012 4919 Hs.128753 NM_001083592 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 2107 chr22 24635608 24644794 + 0 NA intron (NM_004121, intron 1 of 11) intron (NM_004121, intron 1 of 11) 909 NM_004121 2687 Hs.437156 XM_005261557 ENSG00000099998 GGT5 GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 1108 chr7 116415335 116418294 + 0 NA intron (NM_001127500, intron 15 of 20) intron (NM_001127500, intron 15 of 20) -85749 NM_006136 830 Hs.446123 XR_242266 CAPZA2 CAPPA2|CAPZ capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 1275 chr8 134653271 134655966 + 0 NA Intergenic Intergenic -70435 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 2211 chr3 189899554 189904991 + 0 NA Intergenic Intergenic -62046 NM_001134418 55214 Hs.374191 NM_001134418 ENSG00000090530 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 1598 chr11 78795955 78801453 + 0 NA intron (NM_001098816, intron 4 of 33) intron (NM_001098816, intron 4 of 33) 314449 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 2282 chr5 92304145 92307835 + 0 NA Intergenic Intergenic 600509 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1014 chr6 26035579 26035985 + 0 NA Intergenic Intergenic -1986 NM_003513 8335 Hs.248174 NM_003513 ENSG00000137259 HIST1H2AB H2A/m|H2AFM histone cluster 1, H2ab protein-coding 2760 chr11 69142094 69143559 + 0 NA Intergenic Intergenic 81204 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 843 chr3 129204184 129206235 + 0 NA intron (NM_001280545, intron 16 of 30) MIRb|SINE|MIR -42273 NM_000539 6010 Hs.247565 NM_000539 ENSG00000163914 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 1856 chr17 18981718 18989236 + 0 NA Intergenic AluY|SINE|Alu -35141 NM_006613 10750 Hs.567416 XM_005256425 GRAP - GRB2-related adaptor protein protein-coding 2529 chr8 38377267 38382599 + 0 NA intron (NM_207412, intron 1 of 2) AluSx3|SINE|Alu 6247 NM_207412 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 1491 chr10 72237170 72239960 + 0 NA promoter-TSS (NM_014431) promoter-TSS (NM_014431) 1 NM_014431 27143 Hs.202351 NM_014431 ENSG00000107719 PALD1 KIAA1274|PALD phosphatase domain containing, paladin 1 protein-coding 1362 chr1 114556239 114559741 + 0 NA Intergenic Intergenic 35977 NM_001286353 56944 Hs.9315 XM_005271049 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin-like 3 protein-coding 1804 chr16 69120664 69124582 + 0 NA Intergenic L2a|LINE|L2 -16844 NM_001199280 3038 Hs.592069 XM_005255919 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 2315 chr5 96527830 96529749 + 0 NA Intergenic L1PB1|LINE|L1 -9784 NM_001159749 55781 Hs.27021 NM_001159749 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 632 chr19 10679711 10680885 + 0 NA promoter-TSS (NM_001800) promoter-TSS (NM_001800) -643 NM_079421 1032 Hs.435051 NM_001800 ENSG00000129355 CDKN2D INK4D|p19|p19-INK4D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) protein-coding 2357 chr6 45617793 45619971 + 0 NA Intergenic Intergenic 228568 NM_001278478 860 Hs.535845 NM_001015051 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 394 chr15 53599818 53601063 + 0 NA Intergenic L1MA8|LINE|L1 232609 NR_102336 256764 Hs.122125 NM_001277176 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 1371 chr1 101086216 101094807 + 0 NA Intergenic Intergenic 22049 NR_038914 100128787 Hs.536050 NR_038914 RP11-84O12.4 - uncharacterized LOC100128787 ncRNA 2484 chr8 142243411 142246640 + 0 NA intron (NM_001286646, intron 1 of 7) intron (NM_001286646, intron 1 of 7) -6352 NM_001286648 57210 Hs.372492 XM_005251001 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 2257 chr4 120000805 120004324 + 0 NA Intergenic L2c|LINE|L2 -54375 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 610 chr19 46907294 46908184 + 0 NA Intergenic L2a|LINE|L2 9180 NM_032040 83987 Hs.744359 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 514 chr17 15804026 15806039 + 0 NA Intergenic L2c|LINE|L2 -43199 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 2659 chrX 47930288 47931535 + 0 NA promoter-TSS (NM_001037735) promoter-TSS (NM_001037735) 114 NM_001190255 57232 Hs.650883 NM_001037735 ENSG00000221994 ZNF630 dJ54B20.2 zinc finger protein 630 protein-coding 2444 chr8 17578917 17585186 + 0 NA intron (NM_001001924, intron 3 of 14) intron (NM_001001924, intron 3 of 14) -1967 NM_001166393 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 725 chr2 165370577 165371993 + 0 NA intron (NM_004490, intron 6 of 13) L1PB1|LINE|L1 107075 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 513 chr17 15800581 15802099 + 0 NA Intergenic Intergenic -46891 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 50 chr1 98495959 98496875 + 0 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 14490 NR_039604 100616452 NR_039604 ENSG00000225206 MIR2682 - microRNA 2682 ncRNA 2645 chr9 140375703 140377714 + 0 NA intron (NM_152286, intron 20 of 33) L1MC1|LINE|L1 -22922 NM_001130969 26012 Hs.455336 XM_005266061 ENSG00000165802 NSMF HH9|NELF NMDA receptor synaptonuclear signaling and neuronal migration factor protein-coding 1519 chr11 9920432 9933073 + 0 NA intron (NM_030962, intron 16 of 39) intron (NM_030962, intron 16 of 39) -145672 NR_033972 440028 Hs.677541 XR_242804 ENSG00000245522 RP11-540A21.2 - uncharacterized LOC440028 ncRNA 1994 chr2 165390704 165400427 + 0 NA intron (NM_004490, intron 3 of 13) intron (NM_004490, intron 3 of 13) 82795 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 3252 chrX 68061399 68063825 + 0 NA TTS (NM_004429) TTS (NM_004429) 13772 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFL3|EPLG2|Elk-L|LERK2 ephrin-B1 protein-coding 2633 chr9 114781641 114785241 + 0 NA intron (NR_036085, intron 3 of 3) AluSq2|SINE|Alu 89061 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 3173 chr8 52294362 52297167 + 0 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 426241 NM_144651 137902 Hs.444882 XM_005251167 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 797 chr21 35133189 35134958 + 0 NA intron (NM_001001132, intron 8 of 29) intron (NM_001001132, intron 8 of 29) 119289 NM_003024 6453 Hs.160324 XM_005261026 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 (SH3 domain protein) protein-coding 2459 chr8 37683184 37685250 + 0 NA intron (NM_032777, intron 2 of 18) intron (NM_032777, intron 2 of 18) 23214 NM_018310 55290 Hs.709301 NM_018310 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit protein-coding 2197 chr3 148989231 148993700 + 0 NA Intergenic Intergenic -51633 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 1136 chr8 8127328 8127970 + 0 NA Intergenic Intergenic 41557 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 1175 chr8 25055404 25057820 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 14325 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1236 chr8 90907652 90910335 + 0 NA Intergenic L1MA3|LINE|L1 -5103 NM_004337 734 Hs.436445 NM_001126111 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 1683 chr13 95750705 95756568 + 0 NA intron (NM_001105515, intron 20 of 20) intron (NM_001105515, intron 20 of 20) 200051 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 2413 chr7 76017461 76019542 + 0 NA TTS (NM_080744) TTS (NM_080744) -8340 NM_007155 7784 Hs.656137 NM_001110354 ENSG00000188372 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 (sperm receptor) protein-coding 645 chr19 37263044 37264252 + 0 NA promoter-TSS (NM_001193552) promoter-TSS (NM_001193552) 68 NM_001267779 342892 Hs.406307 XM_005258857 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 1326 chr9 132113835 132114781 + 0 NA Intergenic Intergenic 31013 NM_001012715 414318 Hs.449434 NM_001012715 C9orf106 bA65J3.5 chromosome 9 open reading frame 106 protein-coding 2566 chr8 122821754 122825228 + 0 NA Intergenic Intergenic -169861 NM_005328 3037 Hs.159226 XM_005250900 HAS2 - hyaluronan synthase 2 protein-coding 1382 chr1 214775469 214779277 + 0 NA intron (NM_016343, intron 1 of 19) intron (NM_016343, intron 1 of 19) 841 NM_016343 1063 Hs.497741 XM_005273008 ENSG00000117724 CENPF CENF|PRO1779|hcp-1 centromere protein F, 350/400kDa protein-coding 1176 chr8 25058144 25060285 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 16927 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1452 chr10 33353294 33358038 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -108373 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 2881 chr17 75502887 75505457 + 0 NA Intergenic MIRc|SINE|MIR 32847 NM_001113495 10801 Hs.440932 XM_005256958 ENSG00000184640 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 2384 chr7 81312748 81315192 + 0 NA Intergenic Intergenic 85482 NM_001010933 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 1039 chr6 45623053 45624719 + 0 NA Intergenic Intergenic 233572 NM_001278478 860 Hs.535845 NM_001015051 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 1815 chr16 10830342 10833764 + 0 NA Intergenic Intergenic -5590 NM_001278506 4682 Hs.81469 NM_001278506 ENSG00000103274 NUBP1 NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 2637 chr9 123293905 123296195 + 0 NA intron (NM_001272039, intron 7 of 34) intron (NM_001272039, intron 7 of 34) 47398 NR_073556 55755 Hs.269560 NM_001011649 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 1005 chr6 27097442 27103200 + 0 NA promoter-TSS (NM_021064) promoter-TSS (NM_021064) 254 NM_021058 8970 Hs.656567 XM_005249464 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 28 chr1 12492668 12497720 + 0 NA intron (NM_018156, intron 64 of 68) intron (NM_018156, intron 64 of 68) -72106 NR_003025 677885 Hs.721005 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 2089 chr20 52418993 52424027 + 0 NA Intergenic MamRep137|DNA|TcMar? 70738 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 589 chr18 8116228 8117444 + 0 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 250196 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 RP11-789C17.3 - uncharacterized LOC100192426 ncRNA 2087 chr20 52224694 52230900 + 0 NA Intergenic Intergenic -28161 NM_006526 7764 Hs.711564 XM_005260545 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 1337 chrX 10596962 10599174 + 0 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -9394 NM_000381 4281 Hs.689953 XM_005274536 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 (Opitz/BBB syndrome) protein-coding 215 chr11 66671932 66672516 + 0 NA intron (NM_000920, intron 2 of 21) intron (NM_000920, intron 2 of 21) 3116 NM_022172 5091 Hs.89890 XM_005274030 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 687 chr2 28304835 28306324 + 0 NA intron (NM_001261840, intron 6 of 11) intron (NM_001261840, intron 6 of 11) 86345 NR_036230 100422965 NR_036230 MIR4263 - microRNA 4263 ncRNA 3101 chr7 73416601 73417942 + 0 NA Intergenic Intergenic -24848 NM_001278914 2006 Hs.647061 XM_005250187 ENSG00000049540 ELN SVAS|WBS|WS elastin protein-coding 2098 chr21 17107162 17113148 + 0 NA intron (NM_001283042, intron 1 of 24) Tigger4a|DNA|TcMar-Tigger 7811 NM_001283041 29761 Hs.743994 XM_005260946 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 2184 chr3 57435087 57437888 + 0 NA intron (NM_178504, intron 25 of 58) intron (NM_178504, intron 25 of 58) 93584 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein, axonemal, heavy chain 12 protein-coding 150 chr11 114161866 114163898 + 0 NA Intergenic L1ME3B|LINE|L1 -3653 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 3161 chr8 34714747 34716153 + 0 NA Intergenic Intergenic -377525 NM_080872 137970 Hs.238889 XM_005273404 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 homolog D (C. elegans) protein-coding 3018 chr4 5158890 5161186 + 0 NA intron (NM_018401, intron 2 of 11) intron (NM_018401, intron 2 of 11) 106511 NM_018401 55351 Hs.133062 XM_005247980 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 2298 chr5 39758642 39762290 + 0 NA Intergenic Intergenic 239933 NR_104632 101926940 Hs.738168 XR_241760 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 2336 chr6 26019581 26059349 + 0 NA Intergenic L1MD|LINE|L1 4420 NM_021062 3018 Hs.553494 NM_021062 ENSG00000196226 HIST1H2BB H2B.1|H2B/f|H2BFF histone cluster 1, H2bb protein-coding 245 chr12 40679857 40682993 + 0 NA intron (NM_198578, intron 20 of 50) intron (NM_198578, intron 20 of 50) 62612 NM_198578 120892 Hs.187636 XM_005268629 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine-rich repeat kinase 2 protein-coding 2604 chr9 46971552 46975621 + 0 NA Intergenic L1P4b|LINE|L1 144296 NR_046203 643648 Hs.742595 NR_046203 LINC01189 RP11-211N8.7 long intergenic non-protein coding RNA 1189 ncRNA 2511 chr8 25070591 25073451 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 29734 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2190 chr3 117265751 117268839 + 0 NA Intergenic Intergenic 838660 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|NCRNA00295|RP11-115O13.1 tumor suppressor candidate 7 (non-protein coding) ncRNA 2546 chr8 67374435 67376949 + 0 NA intron (NM_144650, intron 13 of 13) intron (NM_144650, intron 13 of 13) -29799 NM_152765 254778 Hs.268869 XM_005251206 ENSG00000169085 C8orf46 - chromosome 8 open reading frame 46 protein-coding 826 chr22 41908430 41909467 + 0 NA intron (NM_001098, intron 4 of 17) intron (NM_001098, intron 4 of 17) 31545 NM_138338 171568 Hs.712617 XM_005261385 ENSG00000100413 POLR3H RPC22.9|RPC8 polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein-coding 2494 chr8 11733854 11736237 + 0 NA Intergenic AluSx1|SINE|Alu -9399 NM_147782 1508 Hs.520898 XM_005272367 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 1344 chrX 93859903 93861706 + 0 NA Intergenic Intergenic 931792 NM_001171111 286499 Hs.110069 NM_001171109 ENSG00000179083 FAM133A CT115 family with sequence similarity 133, member A protein-coding 3012 chr3 183641736 183644195 + 0 NA intron (NM_005688, intron 29 of 29) intron (NM_005688, intron 29 of 29) -40272 NM_001037639 55486 Hs.478469 XM_005247582 ENSG00000175193 PARL PSARL|PSARL1|PSENIP2|RHBDS1 presenilin associated, rhomboid-like protein-coding 2666 chrX 139845949 139848964 + 0 NA intron (NR_104228, intron 3 of 3) intron (NR_104228, intron 3 of 3) 19267 NM_004065 1038 Hs.446675 NM_004065 ENSG00000184258 CDR1 CDR|CDR34|CDR62A cerebellar degeneration-related protein 1, 34kDa protein-coding 332 chr13 114833984 114835139 + 0 NA intron (NM_007368, intron 2 of 23) intron (NM_007368, intron 2 of 23) 63534 NM_007368 22821 Hs.593075 XM_005266195 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 2329 chr6 41942905 41946426 + 0 NA intron (NM_001136017, intron 1 of 4) intron (NM_001136017, intron 1 of 4) -35079 NM_001136125 896 Hs.534307 XM_005249463 ENSG00000112576 CCND3 - cyclin D3 protein-coding 1099 chr7 95114613 95115356 + 0 NA promoter-TSS (NM_016116) promoter-TSS (NM_016116) -229 NM_016116 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 1965 chr19 17889080 17891216 + 0 NA intron (NM_015122, intron 20 of 28) L2a|LINE|L2 -15771 NM_014256 10331 Hs.657825 NM_014256 ENSG00000179913 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 2980 chr3 11248737 11250749 + 0 NA intron (NM_001098212, intron 1 of 1) intron (NM_001098212, intron 1 of 1) -17926 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|hisH1 histamine receptor H1 protein-coding 745 chr2 235099765 235100655 + 0 NA Intergenic L1M5|LINE|L1 140864 NM_006944 6694 Hs.444488 XM_005246102 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 34 chr1 28960518 28961668 + 0 NA intron (NM_005644, intron 1 of 5) intron (NM_005644, intron 1 of 5) 8511 NM_001135218 6883 Hs.530251 XM_005245977 ENSG00000120656 TAF12 TAF2J|TAFII20 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa protein-coding 2653 chrX 177458 180063 + 0 NA Intergenic LTR8|LTR|ERV1 -14231 NR_028057 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 2656 chrX 29552410 29554926 + 0 NA intron (NM_014271, intron 5 of 10) intron (NM_014271, intron 5 of 10) -680007 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 melanoma antigen family B, 2 protein-coding 2548 chr8 82192059 82194888 + 0 NA intron (NM_001444, intron 1 of 3) CpG 755 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 (psoriasis-associated) protein-coding 2082 chr20 46045231 46048207 + 0 NA Intergenic Intergenic -61086 NM_183048 23613 Hs.668465 XM_005260356 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 3056 chr5 75773993 75776744 + 0 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -67866 NM_001285460 10788 Hs.291030 XM_005248409 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 2613 chr9 41002140 41006240 + 0 NA Intergenic L1P4b|LINE|L1 -212078 NM_033160 26149 Hs.522147 XM_005272515 ENSG00000196409 ZNF658 - zinc finger protein 658 protein-coding 620 chr19 2461185 2463800 + 0 NA Intergenic MIR|SINE|MIR -5526 NM_032737 84823 Hs.538286 NM_032737 ENSG00000176619 LMNB2 LAMB2|LMN2 lamin B2 protein-coding 1410 chr1 55774583 55778279 + 0 NA Intergenic Intergenic 85117 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 - microRNA 4422 ncRNA 2693 chr1 101199385 101201439 + 0 NA intron (NM_080682, intron 7 of 7) intron (NM_080682, intron 7 of 7) 15216 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 1434 chr1 200010945 200012800 + 0 NA promoter-TSS (NM_001276464) promoter-TSS (NM_001276464) -81 NM_001276464 2494 Hs.33446 XM_005245061 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 2713 chr1 244898234 244899433 + 0 NA Intergenic MER61E|LTR|ERV1 82481 NM_016076 51029 Hs.498317 XM_005273154 ENSG00000121644 DESI2 C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 2625 chr9 84268412 84274250 + 0 NA intron (NM_005077, intron 4 of 19) intron (NM_005077, intron 4 of 19) 32265 NM_005077 7088 Hs.689805 XM_005252151 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 2471 chr8 104382410 104385062 + 0 NA promoter-TSS (NM_138455) promoter-TSS (NM_138455) -7 NM_138455 115908 Hs.405614 NM_001256099 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 1547 chr11 9339316 9341764 + 0 NA Intergenic LTR5_Hs|LTR|ERVK -4225 NR_028491 440026 Hs.731960 NM_001165030 ENSG00000166471 TMEM41B - transmembrane protein 41B protein-coding 937 chr4 175315426 175316848 + 0 NA Intergenic L1MA7|LINE|L1 -28809 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 1045 chr6 100747660 100749072 + 0 NA Intergenic MER21C|LTR|ERVL 163185 NM_005068 6492 Hs.520293 XM_005267100 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 1619 chr12 111841967 111853838 + 0 NA intron (NM_005475, intron 1 of 7) intron (NM_005475, intron 1 of 7) 4150 NM_005475 10019 Hs.506784 XM_005253818 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 730 chr2 165550860 165551733 + 0 NA exon (NM_014900, exon 12 of 14) exon (NM_014900, exon 12 of 14) -7009 NR_033309 100337591 Hs.664357 NR_033309 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 16 chr1 214775546 214779085 + 0 NA intron (NM_016343, intron 1 of 19) intron (NM_016343, intron 1 of 19) 783 NM_016343 1063 Hs.497741 XM_005273008 ENSG00000117724 CENPF CENF|PRO1779|hcp-1 centromere protein F, 350/400kDa protein-coding 921 chr4 95854867 95857343 + 0 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -61278 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2880 chr17 75229063 75231265 + 0 NA Intergenic Intergenic -47328 NM_001113491 10801 Hs.440932 XM_005256958 ENSG00000184640 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 1069 chr7 11823773 11827958 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 45959 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2311 chr5 78070812 78073745 + 0 NA TTS (NM_000046) TTS (NM_000046) -127630 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 1224 chr8 67035325 67037936 + 0 NA Intergenic L2c|LINE|L2 -2648 NM_184087 84675 Hs.85524 XM_005251316 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 368 chr14 102749927 102751493 + 0 NA intron (NM_001272011, intron 1 of 10) MLT1J-int|LTR|ERVL-MaLR 20827 NM_001272011 5891 Hs.104119 NM_001272011 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1 MOK protein kinase protein-coding 3078 chr6 17971272 17973520 + 0 NA intron (NM_001243423, intron 2 of 2) intron (NM_001243423, intron 2 of 2) 15458 NM_001105568 63971 Hs.94499 XM_005249289 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 2556 chr8 101155666 101158938 + 0 NA non-coding (NR_036491, exon 1 of 5) non-coding (NR_036491, exon 1 of 5) 797 NM_001029860 286151 Hs.339577 XM_005250897 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 994 chr5 158936839 158938856 + 0 NA Intergenic MIR3|SINE|MIR -44563 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 AC008703.1 - uncharacterized LOC285627 ncRNA 611 chr19 48773488 48775856 + 0 NA promoter-TSS (NM_153608) promoter-TSS (NM_153608) 18 NM_153608 163071 Hs.511883 XM_005258579 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 1786 chr15 101976037 101982517 + 0 NA intron (NM_138324, intron 2 of 14) L2|LINE|L2 50910 NM_138323 5046 Hs.665989 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 1849 chr16 89777982 89779880 + 0 NA intron (NM_004913, intron 5 of 14) intron (NM_004913, intron 5 of 14) 667 NR_036480 100128881 Hs.666282 XR_243501 ENSG00000261373 VPS9D1-AS1 RP11-368I7.2 VPS9D1 antisense RNA 1 ncRNA 849 chr3 10236576 10238736 + 0 NA intron (NM_001570, intron 2 of 12) intron (NM_001570, intron 2 of 12) 31093 NM_001570 3656 Hs.449207 XR_245126 ENSG00000134070 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 2320 chr5 140012037 140014965 + 0 NA promoter-TSS (NM_000591) promoter-TSS (NM_000591) -215 NM_001174105 929 Hs.163867 NM_000591 ENSG00000170458 CD14 - CD14 molecule protein-coding 492 chr16 70437759 70439105 + 0 NA intron (NM_006927, intron 1 of 6) L1MB7|LINE|L1 34559 NM_006927 6483 Hs.368611 XM_005256114 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 2740 chr11 13138965 13143120 + 0 NA Intergenic Intergenic 110072 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 208 chr11 64850117 64853256 + 0 NA promoter-TSS (NM_080668) promoter-TSS (NM_080668) -8 NM_006782 7542 Hs.712317 NM_006782 ENSG00000162300 ZFPL1 D11S750|MCG4 zinc finger protein-like 1 protein-coding 2788 chr12 86151424 86153970 + 0 NA Intergenic Intergenic 77621 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 protein-coding 2440 chr8 129097776 129106549 + 0 NA intron (NR_003367, intron 5 of 7) Charlie4a|DNA|hAT-Charlie 40764 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 2140 chr3 44035844 44044682 + 0 NA Intergenic CpG -115441 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1 microRNA 138-1 ncRNA 2271 chr5 55573352 55577087 + 0 NA Intergenic Intergenic -46033 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 1523 chr11 34684642 34691864 + 0 NA Intergenic MIRb|SINE|MIR 34242 NM_001206616 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 3225 chr8 134557204 134560001 + 0 NA intron (NM_003033, intron 1 of 8) AluSz|SINE|Alu 25581 NM_173344 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 93 chr10 62734007 62739977 + 0 NA intron (NR_024554, intron 2 of 11) intron (NR_024554, intron 2 of 11) 23744 NR_024554 9886 Hs.737374 NM_001242359 ENSG00000072422 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 3055 chr5 55605722 55607559 + 0 NA Intergenic Intergenic -77454 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 2773 chr11 122556303 122557899 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 30703 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 292 chr12 87053198 87054894 + 0 NA intron (NM_013244, intron 1 of 6) L2|LINE|L2 -107317 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 2445 chr8 17606523 17617121 + 0 NA exon (NM_001001925, exon 2 of 14) exon (NM_001001925, exon 2 of 14) -31738 NM_001166393 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 291 chr12 85576327 85577340 + 0 NA intron (NM_001079910, intron 24 of 26) AT_rich|Low_complexity|Low_complexity -97203 NM_006982 8092 Hs.41683 XM_005269165 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 3071 chr5 91714424 91715793 + 0 NA Intergenic Intergenic -1035959 NM_020801 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 3040 chr4 105648920 105650361 + 0 NA Intergenic Intergenic -233582 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 2429 chr7 139356965 139362016 + 0 NA intron (NM_001113239, intron 2 of 14) intron (NM_001113239, intron 2 of 14) 118203 NM_022740 28996 Hs.731417 NM_001113239 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 374 chr15 63388580 63390986 + 0 NA Intergenic Intergenic -24216 NM_001288585 114294 Hs.410388 XM_005254143 ENSG00000103642 LACTB G24|MRPL56 lactamase, beta protein-coding 2790 chr12 86214381 86217150 + 0 NA intron (NM_005447, intron 1 of 1) intron (NM_005447, intron 1 of 1) 14553 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 protein-coding 114 chr10 34652633 34653912 + 0 NA intron (NM_001184790, intron 10 of 22) intron (NM_001184790, intron 10 of 22) 450981 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 429 chr16 15530787 15532563 + 0 NA intron (NM_033201, intron 1 of 5) AluY|SINE|Alu 3350 NM_033201 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 1306 chr9 44532891 44534423 + 0 NA Intergenic L1P3|LINE|L1 146270 NR_046203 643648 Hs.742595 NR_046203 LINC01189 RP11-211N8.7 long intergenic non-protein coding RNA 1189 ncRNA 1939 chr19 17940352 17941717 + 0 NA intron (NM_000215, intron 22 of 23) intron (NM_000215, intron 22 of 23) -8651 NM_005543 3640 Hs.37062 NM_001265587 ENSG00000248099 INSL3 RLF|RLNL|ley-I-L insulin-like 3 (Leydig cell) protein-coding 3097 chr6 154807990 154810837 + 0 NA intron (NM_173515, intron 1 of 12) intron (NM_173515, intron 1 of 12) 22340 NM_173515 154043 Hs.16064 NM_173515 CNKSR3 MAGI1 CNKSR family member 3 protein-coding 1328 chr9 132232614 132233349 + 0 NA Intergenic Intergenic -17958 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 73 chr1 200304881 200306951 + 0 NA Intergenic Intergenic 37004 NR_040064 554279 Hs.575858 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 409 chr15 71569438 71573463 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) 137662 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 1091 chr7 76246773 76250492 + 0 NA intron (NM_152992, intron 3 of 4) AluSx|SINE|Alu 7988 NM_152992 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 67 chr1 153669152 153670859 + 0 NA Intergenic Intergenic -7736 NR_107050 102466879 NR_107050 MIR8083 hsa-mir-8083 microRNA mir-8083 ncRNA 812 chr22 24596264 24599074 + 0 NA Intergenic AluSz|SINE|Alu 20225 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 241 chr11 122538379 122540535 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 13059 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 1958 chr19 10679792 10681220 + 0 NA promoter-TSS (NM_001800) promoter-TSS (NM_001800) -851 NM_079421 1032 Hs.435051 NM_001800 ENSG00000129355 CDKN2D INK4D|p19|p19-INK4D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) protein-coding 1962 chr19 14473385 14475843 + 0 NA Intergenic Intergenic -17342 NM_078481 976 Hs.466039 XM_005260170 ENSG00000123146 CD97 TM7LN1 CD97 molecule protein-coding 3133 chr8 6733736 6736159 + 0 NA intron (NM_005218, intron 1 of 1) intron (NM_005218, intron 1 of 1) 582 NM_005218 1672 Hs.32949 NM_005218 ENSG00000164825 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin, beta 1 protein-coding 2561 chr8 108127189 108130719 + 0 NA Intergenic Intergenic -346482 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin-binding Rho activating protein protein-coding 489 chr16 69443031 69445647 + 0 NA Intergenic Intergenic -14159 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5|RP11-140H17.1 cytochrome b5 type B (outer mitochondrial membrane) protein-coding 585 chr18 24050085 24051779 + 0 NA intron (NM_001258221, intron 3 of 4) intron (NM_001258221, intron 3 of 4) 77568 NM_001142730 284252 Hs.526630 NM_001136205 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 327 chr13 95914027 95914805 + 0 NA intron (NM_001105515, intron 1 of 20) intron (NM_001105515, intron 1 of 20) 39271 NM_001105515 10257 Hs.508423 XM_005254025 ENSG00000125257 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 1392 chr1 9388076 9393901 + 0 NA intron (NM_025106, intron 1 of 2) L1M3|LINE|L1 38047 NM_025106 80176 Hs.738680 XM_005263498 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 1970 chr19 37262591 37264527 + 0 NA intron (NM_001267779, intron 1 of 3) CpG 157 NM_001267779 342892 Hs.406307 XM_005258857 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 2391 chr7 2857664 2862850 + 0 NA intron (NM_007353, intron 1 of 3) intron (NM_007353, intron 1 of 3) -5364 NM_001282441 2768 Hs.487341 XM_005249714 ENSG00000146535 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 1080 chr7 47569617 47570426 + 0 NA intron (NM_022748, intron 1 of 30) L1MEc|LINE|L1 51721 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 1281 chr8 142036451 142037770 + 0 NA Intergenic Intergenic -25698 NM_001199649 5747 Hs.395482 XM_005251003 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 2819 chr14 101908623 101912205 + 0 NA Intergenic Intergenic 111599 NR_002770 64150 Hs.745484 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 732 chr2 169746050 169747065 + 0 NA intron (NM_020675, intron 1 of 6) MIR3|SINE|MIR 387 NM_020675 57405 Hs.421956 XM_005246702 ENSG00000152253 SPC25 SPBC25|hSpc25 SPC25, NDC80 kinetochore complex component protein-coding 1864 chr17 53520379 53537884 + 0 NA Intergenic Intergenic -29790 NM_012329 23531 Hs.656753 XM_005257179 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 3214 chr8 128263800 128265233 + 0 NA Intergenic L2b|LINE|L2 -33003 NR_108049 100507056 Hs.343864 XR_108886 ENSG00000247844 CCAT1 - colon cancer associated transcript 1 (non-protein coding) ncRNA 2233 chr4 15921542 15923863 + 0 NA Intergenic Intergenic 17661 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 1603 chr11 101740580 101742513 + 0 NA Intergenic Intergenic -44200 NM_020802 57562 Hs.156352 XM_005271627 ENSG00000110318 KIAA1377 - KIAA1377 protein-coding 622 chr19 2533258 2535100 + 0 NA intron (NM_052847, intron 3 of 4) intron (NM_052847, intron 3 of 4) 58056 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 1881 chr17 39164594 39167205 + 0 NA promoter-TSS (NM_031958) promoter-TSS (NM_031958) -533 NM_031958 83896 Hs.307027 NM_031958 ENSG00000212901 KRTAP3-1 KAP3.1|KRTAP3.1 keratin associated protein 3-1 protein-coding 970 chr5 75698099 75700159 + 0 NA promoter-TSS (NM_006633) promoter-TSS (NM_006633) 49 NM_006633 10788 Hs.291030 XM_005248409 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 2381 chr7 68161923 68174194 + 0 NA Intergenic Intergenic 894423 NR_108105 100507468 Hs.362492 XR_108828 LOC100507468 - uncharacterized LOC100507468 ncRNA 2771 chr11 114154602 114157272 + 0 NA Intergenic Intergenic -10598 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 2375 chr7 151122093 151127951 + 0 NA Intergenic Intergenic 5703 NR_037468 100500835 NR_037468 MIR3907 - microRNA 3907 ncRNA 24 chr1 9226519 9227319 + 0 NA Intergenic Intergenic -15083 NR_029610 407040 Hs.730325 NR_029610 ENSG00000207865 MIR34A MIRN34A|miRNA34A|mir-34 microRNA 34a ncRNA 1416 chr1 81120775 81124067 + 0 NA Intergenic Intergenic -1143661 NM_012302 23266 Hs.649282 XM_005270666 ENSG00000117114 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 2759 chr11 69076454 69080859 + 0 NA Intergenic Intergenic 17034 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 2256 chr4 114879474 114881610 + 0 NA intron (NM_024590, intron 1 of 1) intron (NM_024590, intron 1 of 1) 20336 NM_024590 79642 Hs.712042 XM_005263211 ENSG00000180801 ARSJ - arylsulfatase family, member J protein-coding 2049 chr2 208610080 208614404 + 0 NA intron (NM_152523, intron 9 of 10) intron (NM_152523, intron 9 of 10) -7289 NR_039934 100616361 NR_039934 ENSG00000264900 MIR4775 - microRNA 4775 ncRNA 1658 chr12 96234122 96237155 + 0 NA Intergenic SVA_E|Other|Other -17071 NM_003095 6636 Hs.105465 NM_003095 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 3197 chr8 90919607 90921338 + 0 NA intron (NM_001126111, intron 1 of 5) intron (NM_001126111, intron 1 of 5) 5710 NM_001126111 734 Hs.436445 NM_001126111 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 104 chr10 33304223 33305518 + 0 NA Intergenic Intergenic -57577 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 2057 chr2 235086504 235088336 + 0 NA Intergenic LTR33|LTR|ERVL 128074 NM_006944 6694 Hs.444488 XM_005246102 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 1558 chr11 34605416 34611279 + 0 NA Intergenic Intergenic -34241 NM_012153 26298 Hs.653859 XM_005252857 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 1237 chr8 95486130 95488122 + 0 NA intron (NM_001205262, intron 1 of 3) CpG 217 NM_012415 25788 Hs.744229 NM_001205262 ENSG00000197275 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 1635 chr12 31659221 31664419 + 0 NA intron (NM_144973, intron 1 of 20) intron (NM_144973, intron 1 of 20) -81037 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 RP11-820K3.5 DENND5B antisense RNA 1 ncRNA 2361 chr6 56731592 56735109 + 0 NA intron (NM_001144769, intron 3 of 96) intron (NM_001144769, intron 3 of 96) -16636 NM_001144770 667 Hs.735651 XM_005249310 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 2175 chr3 42536703 42540006 + 0 NA intron (NM_001251882, intron 1 of 13) intron (NM_001251882, intron 1 of 13) -5750 NM_004624 7433 Hs.348500 XM_005265437 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 1513 chr11 65654132 65672255 + 0 NA intron (NM_005438, intron 2 of 3) intron (NM_005438, intron 2 of 3) 4804 NM_005438 8061 Hs.283565 XM_005274311 ENSG00000175592 FOSL1 FRA|FRA1|fra-1 FOS-like antigen 1 protein-coding 1264 chr8 129102910 129104526 + 0 NA intron (NR_003367, intron 5 of 7) intron (NR_003367, intron 5 of 7) 42320 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 2490 chr8 8143442 8156351 + 0 NA Intergenic AluSx1|SINE|Alu 63804 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 747 chr2 235279949 235281285 + 0 NA Intergenic Intergenic 125076 NM_005737 10123 Hs.730678 XM_005246055 ENSG00000188042 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 159 chr11 69450579 69452006 + 0 NA Intergenic CpG -4581 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 2563 chr8 119022764 119025097 + 0 NA intron (NM_000127, intron 1 of 10) MIRb|SINE|MIR 100128 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 3086 chr6 45664331 45666663 + 0 NA Intergenic Intergenic 239837 NR_045674 53405 Hs.734348 NM_001114086 ENSG00000112782 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 1633 chr12 21225786 21228009 + 0 NA intron (NM_001009562, intron 11 of 12) L1PB1|LINE|L1 -57231 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family, member 1B1 protein-coding 47 chr1 92076833 92077810 + 0 NA Intergenic Intergenic 110656 NM_001134420 8317 Hs.533573 XM_005271241 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 1427 chr1 145962728 145964781 + 0 NA intron (NR_104217, intron 2 of 17).2 intron (NR_104217, intron 2 of 17).2 -21135 NR_003377 728939 Hs.696575 NR_003377 ENSG00000215860 PDZK1P1 - PDZ domain containing 1 pseudogene 1 pseudo 1942 chr19 45413180 45419493 + 0 NA Intergenic Intergenic -1585 NM_001645 341 Hs.737668 XM_005258855 ENSG00000130208 APOC1 - apolipoprotein C-I protein-coding 1484 chr10 34924872 34929832 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 176901 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1017 chr6 26183211 26185059 + 0 NA exon (NM_003523, exon 1 of 1) exon (NM_003523, exon 1 of 1) 111 NM_003523 8344 Hs.534369 NM_003523 ENSG00000197697 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1, H2be protein-coding 270 chr12 63001901 63004025 + 0 NA Intergenic L1MC5|LINE|L1 5497 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 1057 chr7 47689704 47695484 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -2248 NM_001123065 401335 Hs.520816 NM_001123065 ENSG00000221845 C7orf65 - chromosome 7 open reading frame 65 protein-coding 2042 chr2 174218146 174221791 + 0 NA intron (NM_031942, intron 1 of 9) CpG 407 NM_145810 83879 Hs.470654 XM_005246883 ENSG00000144354 CDCA7 JPO1 cell division cycle associated 7 protein-coding 538 chr17 39175479 39177669 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 6880 NM_031957 83895 Hs.534499 NM_031957 ENSG00000221852 KRTAP1-5 KAP1.5|KRTAP1.5 keratin associated protein 1-5 protein-coding 2840 chr15 102118429 102120807 + 0 NA Intergenic Intergenic 72976 NM_078474 80213 Hs.288912 XM_005254980 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 1602 chr11 100609413 100612083 + 0 NA intron (NM_152432, intron 1 of 23) intron (NM_152432, intron 1 of 23) 52341 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 521 chr17 15866586 15868125 + 0 NA intron (NM_000676, intron 1 of 1) intron (NM_000676, intron 1 of 1) 19124 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 2007 chr2 28547808 28551632 + 0 NA intron (NM_199192, intron 12 of 12) intron (NM_199192, intron 12 of 12) -16394 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 AC093690.1 - uncharacterized LOC100505716 ncRNA 1332 chrX 196408 197293 + 0 NA intron (NR_028057, intron 1 of 8) intron (NR_028057, intron 1 of 8) -1211 NM_018390 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 162 chr11 355239 356607 + 0 NA Intergenic Intergenic -13872 NM_178537 338707 Hs.148074 XM_005252891 ENSG00000182272 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyl transferase 4 protein-coding 1923 chr18 32491398 32495115 + 0 NA Intergenic Intergenic -63636 NM_001143826 10982 Hs.532824 NM_001143826 ENSG00000166974 MAPRE2 EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 protein-coding 880 chr3 118923222 118926190 + 0 NA TTS (NM_006952) TTS (NM_006952) 32281 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 433 chr16 31276402 31277283 + 0 NA intron (NM_000632, intron 3 of 29) intron (NM_000632, intron 3 of 29) 5554 NM_000632 3684 Hs.172631 NM_000632 ENSG00000169896 ITGAM CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6 integrin, alpha M (complement component 3 receptor 3 subunit) protein-coding 2164 chr3 158448819 158451765 + 0 NA promoter-TSS (NM_002888) promoter-TSS (NM_002888) -17 NM_206963 5918 Hs.131269 XM_005247686 ENSG00000118849 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 1399 chr1 16110545 16115989 + 0 NA TTS (NM_017556) TTS (NM_017556) 20927 NM_001089591 440567 Hs.568229 NM_001089591 UQCRHL - ubiquinol-cytochrome c reductase hinge protein-like protein-coding 1912 chr18 656496 659727 + 0 NA exon (NM_001012716, exon 1 of 2) exon (NM_001012716, exon 1 of 2) 229 NM_001012716 494514 Hs.274959 NM_001012716 ENSG00000176912 C18orf56 - chromosome 18 open reading frame 56 protein-coding 986 chr5 106759268 106760589 + 0 NA intron (NM_001962, intron 2 of 4) AluSg4|SINE|Alu 246668 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 786 chr20 54457614 54458725 + 0 NA Intergenic LTR16A1|LTR|ERVL 122359 NM_080617 140689 Hs.741877 XM_005260291 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 740 chr2 208547325 208549998 + 0 NA Intergenic Intergenic -27603 NM_001142300 151195 Hs.597952 XM_005246343 ENSG00000163249 CCNYL1 - cyclin Y-like 1 protein-coding 1117 chr8 17624600 17629735 + 0 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 31259 NM_001001924 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 1008 chr6 2503808 2505006 + 0 NA Intergenic Intergenic 130891 NM_152554 154386 Hs.680574 NM_152554 C6orf195 RP11-145H9.2|bA145H9.2 chromosome 6 open reading frame 195 protein-coding 3022 chr4 114622424 114624792 + 0 NA intron (NM_172115, intron 2 of 16) intron (NM_172115, intron 2 of 16) 59475 NM_172127 817 Hs.144114 XM_005263251 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 103 chr10 33297089 33300537 + 0 NA Intergenic Intergenic -51520 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 201 chr11 62247152 62249111 + 0 NA intron (NM_024060, intron 5 of 5) AluSg4|SINE|Alu 61624 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 871 chr3 49502761 49503791 + 0 NA Intergenic Intergenic -2860 NM_001177643 1605 Hs.76111 NM_001165928 ENSG00000173402 DAG1 156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9 dystroglycan 1 (dystrophin-associated glycoprotein 1) protein-coding 1401 chr1 24864953 24870753 + 0 NA intron (NR_109781, intron 2 of 2) intron (NR_109781, intron 2 of 2) 14662 NR_109781 100506985 Hs.607088 XR_108374 LOC100506985 - uncharacterized LOC100506985 ncRNA 719 chr2 121154498 121157973 + 0 NA Intergenic Intergenic 52516 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin, beta B protein-coding 1529 chr11 62190744 62201965 + 0 NA Intergenic LTR8|LTR|ERV1 9847 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 902 chr4 75595550 75596503 + 0 NA Intergenic L2c|LINE|L2 115397 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|CRDGF|SDGF amphiregulin protein-coding 827 chr22 42066510 42068894 + 0 NA Intergenic AluSq2|SINE|Alu 17211 NM_005008 4809 Hs.182255 XM_005261620 ENSG00000100138 NHP2L1 15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) protein-coding 266 chr12 52369453 52372712 + 0 NA intron (NM_020327, intron 3 of 8) intron (NM_020327, intron 3 of 8) 23918 NM_020327 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor, type IB protein-coding 2039 chr2 169635637 169639172 + 0 NA intron (NR_045787, intron 1 of 2) intron (NR_045787, intron 1 of 2) 5535 NR_045787 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 AC009475.2 CERS6 antisense RNA 1 ncRNA 1353 chrX 150013969 150014691 + 0 NA intron (NM_031462, intron 1 of 10) intron (NM_031462, intron 1 of 10) 52959 NM_001184808 83692 Hs.522805 XM_005274757 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 1742 chr15 71564758 71577578 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) 137380 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 3128 chr7 100099163 100102589 + 0 NA Intergenic AluSx3|SINE|Alu 19326 NM_173564 222950 Hs.320086 XM_005250228 ENSG00000166924 NYAP1 C7orf51 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 protein-coding 2585 chr8 134652334 134659457 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -71712 NM_003033 6482 Hs.374257 XM_005251023 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1624 chr12 121813860 121816584 + 0 NA Intergenic FRAM|SINE|Alu -22664 NM_025126 80196 Hs.292804 NM_001256858 ENSG00000170633 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34, E3 ubiquitin protein ligase protein-coding 2892 chr19 1146759 1148757 + 0 NA intron (NM_014963, intron 3 of 31) intron (NM_014963, intron 3 of 31) -15485 NM_001100122 22904 Hs.408708 XM_005259519 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 1219 chr8 62677656 62681429 + 0 NA Intergenic Intergenic 52195 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 1695 chr14 35191515 35193317 + 0 NA Intergenic MER119|DNA|hAT-Charlie -8387 NM_138638 1073 Hs.180141 NM_001243645 ENSG00000165410 CFL2 NEM7 cofilin 2 (muscle) protein-coding 2534 chr8 41648204 41651423 + 0 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 5327 NM_020475 286 Hs.708861 XM_005273476 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 97 chr10 13202592 13204809 + 0 NA intron (NM_182751, intron 1 of 19) CpG 146 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43 minichromosome maintenance complex component 10 protein-coding 2983 chr3 23776274 23778555 + 0 NA Intergenic LTR16A2|LTR|ERVL -69970 NM_182666 7324 Hs.164853 XM_005265431 ENSG00000170142 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 2378 chr7 11744795 11752038 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 123408 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 1704 chr14 29119960 29123757 + 0 NA Intergenic Charlie7|DNA|hAT-Charlie -114420 NM_005249 2290 Hs.741222 NM_005249 ENSG00000176165 FOXG1 BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN forkhead box G1 protein-coding 668 chr19 55657343 55659510 + 0 NA intron (NM_003283, intron 2 of 13) intron (NM_003283, intron 2 of 13) 2180 NM_001126132 7138 Hs.631558 XM_005259188 ENSG00000105048 TNNT1 ANM|NEM5|STNT|TNT|TNTS troponin T type 1 (skeletal, slow) protein-coding 750 chr2 238110234 238111175 + 0 NA Intergenic Intergenic 116620 NM_006710 10920 Hs.531713 XR_241234 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 688 chr2 28447180 28449044 + 0 NA intron (NM_001261840, intron 7 of 11) intron (NM_001261840, intron 7 of 11) 85214 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 AC093690.1 - uncharacterized LOC100505716 ncRNA 1749 chr15 68237552 68240453 + 0 NA Intergenic Intergenic -107570 NM_016166 8554 Hs.162458 XM_005254734 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT, 1 protein-coding 774 chr20 46081562 46087092 + 0 NA Intergenic Intergenic -46274 NM_001174087 8202 Hs.592142 XM_005260564 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 1126 chr8 62684573 62688238 + 0 NA Intergenic Intergenic 59058 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 - microRNA 4470 ncRNA 2128 chr22 37704945 37706610 + 0 NA intron (NM_013385, intron 9 of 12) MIR3|SINE|MIR 27282 NM_013385 27128 Hs.170944 XM_005261567 ENSG00000100055 CYTH4 CYT4|DJ63G5.1|PSCD4 cytohesin 4 protein-coding 910 chr4 69885418 69886313 + 0 NA exon (NM_001075, exon 2 of 8) exon (NM_001075, exon 2 of 8) 248 NM_001075 7365 Hs.201634 NM_001075 UGT2B10 UDPGT2B10 UDP glucuronosyltransferase 2 family, polypeptide B10 protein-coding 2701 chr1 186466729 186469329 + 0 NA Intergenic MLT2D|LTR|ERVL -21374 NR_031642 100302192 NR_031642 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 693 chr2 38318727 38321301 + 0 NA Intergenic Intergenic -16691 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450, family 1, subfamily B, polypeptide 1 protein-coding 1341 chrX 41275827 41276703 + 0 NA Intergenic AluY|SINE|Alu -30448 NM_022567 60506 Hs.302019 XM_005272632 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 2684 chr1 56795735 56798840 + 0 NA Intergenic Intergenic 247970 NM_003713 8613 Hs.619002 NM_003713 ENSG00000162407 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 1534 chr11 69450296 69452302 + 0 NA Intergenic CpG -4574 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 2570 chr8 126009610 126014100 + 0 NA exon (NM_003129, exon 1 of 11) exon (NM_003129, exon 1 of 11) 1135 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 893 chr3 171660771 171661564 + 0 NA Intergenic Intergenic -96251 NM_022763 64778 Hs.744888 NM_001135095 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 2309 chr5 77960690 77963738 + 0 NA Intergenic Intergenic -17566 NM_005779 10184 Hs.670094 XM_005248396 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 1915 chr18 11322427 11326442 + 0 NA Intergenic Intergenic -175673 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771 piezo-type mechanosensitive ion channel component 2 protein-coding 2737 chr11 122550106 122553533 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 25421 NM_032873 84959 Hs.444075 XM_005271712 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 804 chr22 42236564 42239907 + 0 NA intron (NR_103834, intron 1 of 21) L1MC4a|LINE|L1 9152 NM_004599 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 83 chr10 33420497 33426706 + 0 NA Intergenic LTR45B|LTR|ERV1 -176308 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 2558 chr8 102618402 102621647 + 0 NA intron (NM_024915, intron 8 of 15) intron (NM_024915, intron 8 of 15) 115356 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|TFCP2L3 grainyhead-like 2 (Drosophila) protein-coding 1385 chr1 1616502 1619129 + 0 NA intron (NM_001110781, intron 1 of 8) L1MC4|LINE|L1 6428 NM_001110781 728661 Hs.655255 XM_005244791 ENSG00000189339 SLC35E2B SLC35E2 solute carrier family 35, member E2B protein-coding 2672 chr1 222543693 222545750 + 0 NA Intergenic Intergenic 176723 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 1818 chr16 14537180 14546799 + 0 NA intron (NM_001134477, intron 22 of 23) AluSx|SINE|Alu 138847 NR_029854 100126355 NR_029854 ENSG00000199130 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a microRNA 365a ncRNA 2094 chr21 17119877 17123969 + 0 NA intron (NM_001283042, intron 1 of 24) intron (NM_001283042, intron 1 of 24) 19579 NM_001283041 29761 Hs.743994 XM_005260946 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 962 chr5 55614790 55616102 + 0 NA Intergenic Intergenic -86260 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 755 chr20 3201354 3204667 + 0 NA intron (NR_052000, intron 6 of 6) AluSq2|SINE|Alu 12876 NM_181493 3704 Hs.415299 NM_001267623 ENSG00000125877 ITPA C20orf37|HLC14-06-P|dJ794I6.3 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) protein-coding 1085 chr7 68163545 68165154 + 0 NA Intergenic Intergenic 898132 NR_108105 100507468 Hs.362492 XR_108828 LOC100507468 - uncharacterized LOC100507468 ncRNA 1714 chr14 50153557 50155632 + 0 NA intron (NM_001197331, intron 1 of 16) AluSc|SINE|Alu 504 NM_002692 5427 Hs.162777 NM_001197330 ENSG00000100479 POLE2 DPE2 polymerase (DNA directed), epsilon 2, accessory subunit protein-coding 1837 chr16 58496969 58499569 + 0 NA promoter-TSS (NM_022910) promoter-TSS (NM_022910) 275 NM_001130487 65009 Hs.322430 NM_001130487 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 143 chr10 128946017 128948007 + 0 NA intron (NM_001039762, intron 5 of 5) intron (NM_001039762, intron 5 of 5) 47410 NM_001039762 642938 Hs.613882 XM_005252694 ENSG00000188916 FAM196A C10orf141 family with sequence similarity 196, member A protein-coding 3090 chr6 105401270 105402752 + 0 NA Intergenic Intergenic -2912 NM_001004317 389421 Hs.23616 XM_005266975 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B (C. elegans) protein-coding 1403 chr1 29582649 29585761 + 0 NA intron (NM_001195001, intron 2 of 29) intron (NM_001195001, intron 2 of 29) 21177 NM_001195001 10076 Hs.19718 XM_005245710 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type, U protein-coding 2323 chr5 158936708 158939874 + 0 NA Intergenic MIRb|SINE|MIR -45007 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 AC008703.1 - uncharacterized LOC285627 ncRNA 3049 chr4 175623085 175625284 + 0 NA intron (NM_006529, intron 5 of 9) intron (NM_006529, intron 5 of 9) 126282 NM_001042543 8001 Hs.413099 XM_005263235 ENSG00000145451 GLRA3 - glycine receptor, alpha 3 protein-coding 2822 chr14 102764882 102769136 + 0 NA intron (NM_001272011, intron 1 of 10) intron (NM_001272011, intron 1 of 10) 4528 NM_001272011 5891 Hs.104119 NM_001272011 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1 MOK protein kinase protein-coding 1051 chr6 151402323 151403636 + 0 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) -158155 NM_005100 9590 Hs.371240 XM_005267233 ENSG00000131016 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 2268 chr4 178494176 178496340 + 0 NA Intergenic Intergenic -131601 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 3033 chr4 75247085 75248539 + 0 NA intron (NM_001432, intron 3 of 4) AluSz|SINE|Alu 16952 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG ER epiregulin protein-coding 1497 chr10 114417367 114420523 + 0 NA intron (NM_145206, intron 5 of 7) intron (NM_145206, intron 5 of 7) 25016 NR_036177 100422909 NR_036177 MIR4295 - microRNA 4295 ncRNA 518 chr17 15847574 15851716 + 0 NA intron (NM_000676, intron 1 of 1) intron (NM_000676, intron 1 of 1) 1414 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 497 chr16 84649521 84653610 + 0 NA 5' UTR (NM_021149, exon 1 of 4) 5' UTR (NM_021149, exon 1 of 4) 137 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin-like 1 (Dictyostelium) protein-coding 2914 chr2 84523602 84529624 + 0 NA Intergenic Intergenic 8807 NR_003663 388965 Hs.744643 NR_003663 ENSG00000182814 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 2906 chr19 11174658 11176289 + 0 NA Intergenic AluJb|SINE|Alu -24565 NM_001195799 3949 Hs.713981 XM_005259909 ENSG00000130164 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 1211 chr8 48343522 48344376 + 0 NA intron (NM_001080394, intron 7 of 19) intron (NM_001080394, intron 7 of 19) 170479 NM_001080394 23514 Hs.381058 XM_005251189 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 3221 chr8 134028356 134030562 + 0 NA intron (NM_003235, intron 37 of 47) MER46C|DNA|TcMar-Tigger 29367 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA mir-7848 ncRNA 2852 chr16 15665009 15667565 + 0 NA intron (NM_033201, intron 3 of 5) intron (NM_033201, intron 3 of 5) 38665 NR_106761 102465252 NR_106761 MIR6506 hsa-mir-6506 microRNA mir-6506 ncRNA 2732 chr10 37515118 37516261 + 0 NA intron (NM_052997, intron 34 of 35) L1MB8|LINE|L1 -82425 NR_104061 101929520 Hs.144151 XR_242757 LINC00993 RP11-20F24.4 long intergenic non-protein coding RNA 993 ncRNA 2155 chr3 81491529 81494036 + 0 NA Intergenic Intergenic 318168 NM_000158 2632 Hs.436062 XM_005264728 ENSG00000114480 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 169 chr11 12092148 12094830 + 0 NA Intergenic Intergenic -38634 NM_014632 9645 Hs.501928 XM_005253243 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 411 chr15 71701748 71708423 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -134456 NM_001286429 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 2991 chr3 67654540 67656893 + 0 NA intron (NM_003848, intron 2 of 10) intron (NM_003848, intron 2 of 10) 49322 NM_003848 8801 Hs.644919 XM_005264773 ENSG00000172340 SUCLG2 GBETA succinate-CoA ligase, GDP-forming, beta subunit protein-coding 2399 chr7 11856377 11861966 + 0 NA intron (NM_015204, intron 1 of 26) L1MC2|LINE|L1 12653 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 1542 chr11 468797 470863 + 0 NA intron (NM_030783, intron 2 of 11) L1MC3|LINE|L1 19550 NM_030783 81490 Hs.731700 XM_005253153 ENSG00000174915 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 1711 chr14 35628205 35631491 + 0 NA intron (NM_001256678, intron 3 of 6) intron (NM_001256678, intron 3 of 6) 38090 NM_001256681 9692 Hs.739309 XM_005268237 ENSG00000100890 KIAA0391 MRPP3|PRORP KIAA0391 protein-coding 2836 chr15 71593907 71596938 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) 161634 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 2102 chr21 38279422 38286196 + 0 NA intron (NM_001242784, intron 6 of 11) AluSx1|SINE|Alu 56147 NM_001242784 3141 Hs.732538 XM_005260953 ENSG00000159267 HLCS HCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding 2579 chr8 130883390 130888895 + 0 NA intron (NM_001256763, intron 4 of 12) intron (NM_001256763, intron 4 of 12) 65976 NM_001256763 51571 Hs.126941 XM_005250963 ENSG00000153310 FAM49B L1 family with sequence similarity 49, member B protein-coding 478 chr16 57891940 57895127 + 0 NA Intergenic Intergenic 48984 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 3242 chr9 123154850 123158124 + 0 NA intron (NM_001272039, intron 33 of 34) intron (NM_001272039, intron 33 of 34) -149159 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 384 chr15 36785509 36791530 + 0 NA Intergenic Intergenic -83293 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 398 chr15 58723508 58725690 + 0 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) 424 NM_000236 3990 Hs.654472 XM_005254372 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase, hepatic protein-coding 836 chr22 46319109 46323260 + 0 NA intron (NM_058238, intron 3 of 3) intron (NM_058238, intron 3 of 3) 51824 NM_058238 7477 Hs.512714 XM_005261729 ENSG00000188064 WNT7B - wingless-type MMTV integration site family, member 7B protein-coding 2016 chr2 43519673 43524208 + 0 NA intron (NM_022065, intron 31 of 37) intron (NM_022065, intron 31 of 37) 67590 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 3182 chr8 66880645 66884093 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -51422 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 3068 chr5 75771467 75773293 + 0 NA intron (NM_006633, intron 2 of 35) L2|LINE|L2 -70854 NM_001285460 10788 Hs.291030 XM_005248409 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 955 chr5 30099451 30101401 + 0 NA Intergenic Intergenic -704343 NR_104628 101929681 Hs.549659 XR_241753 LOC101929681 - uncharacterized LOC101929681 ncRNA 942 chr5 141703377 141706279 + 0 NA promoter-TSS (NM_001127496) promoter-TSS (NM_001127496) -208 NM_030964 81848 Hs.323308 XM_005268517 ENSG00000187678 SPRY4 HH17 sprouty homolog 4 (Drosophila) protein-coding 1735 chr14 103563527 103568595 + 0 NA promoter-TSS (NM_001077594) promoter-TSS (NM_001077594) -420 NM_001077594 91828 Hs.37712 XM_005268210 ENSG00000205436 EXOC3L4 C14orf73|RP11-736N17.8 exocyst complex component 3-like 4 protein-coding 1376 chr1 150157908 150160763 + 0 NA Intergenic Intergenic 37165 NM_016274 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|OC120 pleckstrin homology domain containing, family O member 1 protein-coding 1888 chr17 44176475 44180752 + 0 NA intron (NM_015443, intron 2 of 14) intron (NM_015443, intron 2 of 14) 91553 NM_001193466 284058 Hs.648744 XM_005257232 ENSG00000120071 KANSL1 CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1 KAT8 regulatory NSL complex subunit 1 protein-coding 2030 chr2 153281575 153285007 + 0 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 91540 NM_052905 114793 Hs.654630 XM_005246263 ENSG00000157827 FMNL2 FHOD2 formin-like 2 protein-coding 2286 chr5 315235 320540 + 0 NA intron (NM_001242412, intron 1 of 10) intron (NM_001242412, intron 1 of 10) 13596 NM_001242412 57491 Hs.50823 NM_001242412 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 2369 chr6 107267004 107270010 + 0 NA Intergenic LTR35A|LTR|ERV1 -33207 NR_033557 100422737 Hs.634681 XR_245495 ENSG00000235142 RP1-60O19.1 - uncharacterized LOC100422737 ncRNA 2647 chrX 30318779 30328100 + 0 NA intron (NM_000475, intron 1 of 1) intron (NM_000475, intron 1 of 1) 4056 NM_000475 190 Hs.268490 NM_000475 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0, group B, member 1 protein-coding 1595 chr11 73090643 73103163 + 0 NA intron (NM_032871, intron 1 of 10) AluJo|SINE|Alu 9190 NM_032871 84957 Hs.533720 XM_005274356 ENSG00000054967 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding 190 chr11 57125151 57128945 + 0 NA intron (NM_002559, intron 8 of 11) intron (NM_002559, intron 8 of 11) 21207 NM_002559 5024 Hs.146738 NM_002559 P2RX3 P2X3 purinergic receptor P2X, ligand-gated ion channel, 3 protein-coding 2816 chr14 88509721 88512265 + 0 NA intron (NR_046094, intron 2 of 3) intron (NR_046094, intron 2 of 3) -18337 NR_110121 101928791 Hs.641889 XR_245802 ENSG00000258826 RP11-300J18.1 - uncharacterized LOC101928791 ncRNA 1750 chr15 71579767 71593753 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) 152972 NM_024817 79875 Hs.387057 XM_005254678 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 1808 chr16 1201906 1206268 + 0 NA intron (NM_001005407, intron 2 of 33) CpG-8532 846 NM_001005407 8912 Hs.459642 XM_005255652 ENSG00000196557 CACNA1H CACNA1HB|Cav3.2|ECA6|EIG6 calcium channel, voltage-dependent, T type, alpha 1H subunit protein-coding 2802 chr13 100808199 100809976 + 0 NA intron (NM_001127692, intron 4 of 22) intron (NM_001127692, intron 4 of 22) 67818 NM_001127692 5095 Hs.80741 XM_005254059 ENSG00000175198 PCCA - propionyl CoA carboxylase, alpha polypeptide protein-coding 822 chr22 37726578 37729450 + 0 NA Intergenic Intergenic 49519 NM_013385 27128 Hs.170944 XM_005261567 ENSG00000100055 CYTH4 CYT4|DJ63G5.1|PSCD4 cytohesin 4 protein-coding 601 chr18 56529891 56531795 + 0 NA intron (NM_018181, intron 1 of 10) CpG 782 NM_018181 55205 Hs.607676 XM_005266716 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 1739 chr15 67237728 67242112 + 0 NA Intergenic L1MC4|LINE|L1 -118275 NM_005902 4088 Hs.742270 XM_005254383 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 231 chr11 73778001 73778598 + 0 NA intron (NM_001286577, intron 24 of 32) intron (NM_001286577, intron 24 of 32) -58017 NM_022803 7352 Hs.621879 NM_003356 ENSG00000175564 UCP3 SLC25A9 uncoupling protein 3 (mitochondrial, proton carrier) protein-coding 1610 chr12 40678466 40683278 + 0 NA intron (NM_198578, intron 19 of 50) MIRb|SINE|MIR 62059 NM_198578 120892 Hs.187636 XM_005268629 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine-rich repeat kinase 2 protein-coding 779 chr20 47997565 47998871 + 0 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 100963 NM_004975 3745 Hs.84244 NM_004975 KCNB1 DRK1|KV2.1|h-DRK1 potassium voltage-gated channel, Shab-related subfamily, member 1 protein-coding 551 chr17 53167095 53168682 + 0 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) 121762 NM_178509 252983 Hs.35199 XM_005257185 ENSG00000166263 STXBP4 Synip syntaxin binding protein 4 protein-coding 343 chr14 34550043 34551507 + 0 NA Intergenic Intergenic -130491 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 504 chr17 19070096 19073853 + 0 NA Intergenic Intergenic 41192 NM_001129778 400581 Hs.677674 NM_001129778 GRAPL - GRB2-related adaptor protein-like protein-coding 981 chr5 92304794 92306671 + 0 NA Intergenic Intergenic 600767 NR_015369 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 697 chr2 42359227 42361479 + 0 NA Intergenic Intergenic -36137 NM_001145076 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 2823 chr15 36698825 36700753 + 0 NA Intergenic Intergenic -172023 NM_001130010 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 3001 chr3 105831276 105835967 + 0 NA Intergenic L1MC|LINE|L1 -245734 NM_170662 868 Hs.430589 XM_005247852 ENSG00000114423 CBLB Cbl-b|RNF56 Cbl proto-oncogene B, E3 ubiquitin protein ligase protein-coding 3177 chr8 56759721 56761477 + 0 NA Intergenic Intergenic -31787 NM_001111097 4067 Hs.545418 XM_005251232 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn v-yes-1 Yamaguchi sarcoma viral related oncogene homolog protein-coding 857 chr3 30272567 30274706 + 0 NA Intergenic Intergenic -374358 NM_001024847 7048 Hs.604277 NM_001024847 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 1010 chr6 11043557 11045300 + 0 NA promoter-TSS (NR_038962) promoter-TSS (NR_038962) 196 NM_017770 54898 Hs.656436 XM_005249200 ENSG00000197977 ELOVL2 SSC2 ELOVL fatty acid elongase 2 protein-coding 707 chr2 69921840 69923082 + 0 NA Intergenic Intergenic -46666 NM_001153 307 Hs.422986 XM_005264277 ENSG00000196975 ANXA4 ANX4|PIG28|ZAP36 annexin A4 protein-coding 1966 chr19 17951785 17954182 + 0 NA intron (NM_000215, intron 6 of 23) CpG-13247 5858 NM_000215 3718 Hs.515247 XM_005259896 ENSG00000105639 JAK3 JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK Janus kinase 3 protein-coding 1665 chr12 115370604 115372763 + 0 NA Intergenic Intergenic -249714 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 261 chr12 31677100 31680504 + 0 NA intron (NM_144973, intron 1 of 20) AluJb|SINE|Alu -64055 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 RP11-820K3.5 DENND5B antisense RNA 1 ncRNA 1782 chr15 85497623 85499798 + 0 NA Intergenic Intergenic -25034 NM_001243137 5151 Hs.9333 XM_005254933 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 2698 chr1 115721170 115723162 + 0 NA Intergenic Intergenic -90045 NM_005725 10100 Hs.310458 XM_005270340 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 2439 chr8 25030395 25066754 + 0 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 6287 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2252 chr4 95964251 95975973 + 0 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) -2718 NM_001256793 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2506 chr8 19547863 19550853 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -9097 NR_024040 55790 Hs.721954 NM_001130518 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 321 chr13 47239423 47240766 + 0 NA intron (NM_015116, intron 2 of 18) intron (NM_015116, intron 2 of 18) 112798 NM_015116 23143 Hs.507971 NM_001164211 ENSG00000136141 LRCH1 CHDC1|NP81 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding 792 chr21 16582524 16583172 + 0 NA Intergenic Intergenic -145722 NM_003489 8204 Hs.155017 XM_005261062 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 3209 chr8 110936567 110939006 + 0 NA Intergenic U5|snRNA|snRNA 49173 NM_014379 27012 Hs.13285 XM_005250866 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium channel, subfamily V, member 1 protein-coding 3122 chr7 79814640 79817620 + 0 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 51059 NM_001256414 2770 Hs.134587 NM_001256414 ENSG00000127955 GNAI1 Gi guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 protein-coding 2896 chr19 616660 618804 + 0 NA TTS (NM_001194) TTS (NM_001194) 15836 NM_005035 5442 Hs.254113 XM_005259580 ENSG00000099821 POLRMT APOLMT|MTRNAP|MTRPOL|h-mtRPOL polymerase (RNA) mitochondrial (DNA directed) protein-coding 1079 chr7 47567275 47569582 + 0 NA intron (NM_022748, intron 2 of 30) intron (NM_022748, intron 2 of 30) 53314 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 1248 chr8 122651335 122652887 + 0 NA non-coding (NR_002835, exon 1 of 4) non-coding (NR_002835, exon 1 of 4) 525 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 2422 chr7 116081371 116084724 + 0 NA Intergenic Intergenic -56608 NM_001206747 858 Hs.603096 NM_001206747 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 1590 chr11 69086534 69089842 + 0 NA Intergenic Intergenic 26566 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 2401 chr7 12196397 12205457 + 0 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -49921 NM_001134232 54664 Hs.396358 XM_005249789 TMEM106B - transmembrane protein 106B protein-coding 1652 chr12 76367504 76381846 + 0 NA Intergenic AluSc8|SINE|Alu 50881 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 1516 chr11 306586 311973 + 0 NA 3' UTR (NM_006435, exon 2 of 2) 3' UTR (NM_006435, exon 2 of 2) 1172 NM_006435 10581 Hs.709321 XM_005252750 ENSG00000185201 IFITM2 1-8D|DSPA2c interferon induced transmembrane protein 2 protein-coding 2462 chr8 48870388 48876304 + 0 NA promoter-TSS (NM_006904) promoter-TSS (NM_006904) 583 NM_005914 4173 Hs.460184 XM_005251234 ENSG00000104738 MCM4 CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 2053 chr2 227289715 227294600 + 0 NA Intergenic MER112|DNA|hAT-Charlie 231352 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 924 chr4 95895583 95896499 + 0 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -21342 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2933 chr2 154819361 154821044 + 0 NA intron (NM_052917, intron 3 of 12) L1ME1|LINE|L1 91776 NM_052917 114805 Hs.470277 XM_005246267 ENSG00000144278 GALNT13 GalNAc-T13|H_NH0187G20.1|WUGSC:H_NH0187G20.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) protein-coding 2301 chr5 55641645 55648860 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -116066 NM_024669 79722 Hs.436214 XM_005248599 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 760 chr20 10330865 10335657 + 0 NA Intergenic LTR35|LTR|ERV1 79312 NM_018848 8195 Hs.741430 XM_005260853 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 863 chr3 42538279 42539213 + 0 NA intron (NM_001251882, intron 1 of 13) intron (NM_001251882, intron 1 of 13) -5358 NM_004624 7433 Hs.348500 XM_005265437 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 2481 chr8 129175779 129200153 + 0 NA Intergenic Intergenic 25604 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 531 chr17 36603553 36604777 + 0 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 19445 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000225485 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 2027 chr2 135188371 135191776 + 0 NA intron (NM_002410, intron 14 of 15) intron (NM_002410, intron 14 of 15) 178243 NM_002410 4249 Hs.4988 XM_005263664 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 2469 chr8 95485851 95488285 + 0 NA intron (NM_001205262, intron 1 of 3) CpG 275 NM_012415 25788 Hs.744229 NM_001205262 ENSG00000197275 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 172 chr11 19261497 19262642 + 0 NA intron (NM_001256372, intron 1 of 12) CpG 438 NM_024680 79733 Hs.523526 NM_001256371 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 1745 chr15 37188114 37191820 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -11233 NR_024264 145845 Hs.302693 NR_024264 LOC145845 - uncharacterized LOC145845 ncRNA 2594 chr8 142082464 142087941 + 0 NA Intergenic Intergenic -53518 NM_014957 22898 Hs.18166 XM_005250838 ENSG00000105339 DENND3 - DENN/MADD domain containing 3 protein-coding 2111 chr22 38156562 38159555 + 0 NA intron (NM_001039141, intron 17 of 23) intron (NM_001039141, intron 17 of 23) 15817 NM_007032 11078 Hs.533030 XM_005261316 ENSG00000100106 TRIOBP DFNB28|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 1366 chr1 16104101 16109631 + 0 NA intron (NM_001024216, intron 4 of 4) AluSz|SINE|Alu 15407 NM_001024216 54751 Hs.530101 XM_005245900 ENSG00000162458 FBLIM1 CAL|FBLP-1|FBLP1 filamin binding LIM protein 1 protein-coding 223 chr11 69234692 69236769 + 0 NA Intergenic Intergenic 174108 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 2124 chr22 33723918 33727070 + 0 NA intron (NM_133642, intron 10 of 14) intron (NM_133642, intron 10 of 14) 107161 NR_039921 100616295 NR_039921 MIR4764 - microRNA 4764 ncRNA 721 chr2 135189273 135190934 + 0 NA intron (NM_002410, intron 14 of 15) intron (NM_002410, intron 14 of 15) 178273 NM_002410 4249 Hs.4988 XM_005263664 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 1897 chr17 64542394 64550068 + 0 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -236959 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 1043 chr6 74160231 74162544 + 0 NA exon (NM_138441, exon 1 of 5) exon (NM_138441, exon 1 of 5) 656 NM_138441 115004 Hs.658405 NM_138441 MB21D1 C6orf150|cGAS|h-cGAS Mab-21 domain containing 1 protein-coding 1255 chr8 126283232 126284833 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -158531 NM_025195 10221 Hs.444947 XM_005250752 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 2660 chrX 71457491 71459857 + 0 NA intron (NM_017669, intron 1 of 1) CpG 184 NM_017669 54821 Hs.47558 XM_005262280 ENSG00000186871 ERCC6L PICH|RAD26L excision repair cross-complementing rodent repair deficiency, complementation group 6-like protein-coding 669 chr19 55684664 55685648 + 0 NA intron (NM_003180, intron 8 of 8) CpG 6564 NM_003180 6861 Hs.631566 XM_005259184 SYT5 - synaptotagmin V protein-coding 282 chr12 76105157 76107210 + 0 NA Intergenic Intergenic -200765 NM_007043 11103 Hs.645517 XM_005268592 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 420 chr15 90365112 90367195 + 0 NA Intergenic L2|LINE|L2 -8081 NM_001150 290 Hs.1239 XM_005254892 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl (membrane) aminopeptidase protein-coding 1852 chr17 8109822 8115373 + 0 NA intron (NM_001256834, intron 1 of 7) AluSx|SINE|Alu 1347 NM_004217 9212 Hs.442658 XM_005256852 ENSG00000178999 AURKB AIK2|AIM-1|AIM1|ARK2|AurB|IPL1|PPP1R48|STK12|STK5|aurkb-sv1|aurkb-sv2 aurora kinase B protein-coding 639 chr19 17953023 17953834 + 0 NA intron (NM_000215, intron 5 of 23) CpG-13247 5413 NM_000215 3718 Hs.515247 XM_005259896 ENSG00000105639 JAK3 JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK Janus kinase 3 protein-coding 989 chr5 140012312 140013897 + 0 NA promoter-TSS (NM_000591) promoter-TSS (NM_000591) -69 NM_000591 929 Hs.163867 NM_000591 ENSG00000170458 CD14 - CD14 molecule protein-coding 1505 chr10 128993129 128995922 + 0 NA promoter-TSS (NM_001039762) promoter-TSS (NM_001039762) -103 NM_001039762 642938 Hs.613882 XM_005252694 ENSG00000188916 FAM196A C10orf141 family with sequence similarity 196, member A protein-coding 2372 chr6 151643368 151650013 + 0 NA promoter-TSS (NM_144497) promoter-TSS (NM_144497) 24 NM_144497 9590 Hs.371240 XM_005267233 ENSG00000131016 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 1348 chrX 123085160 123086474 + 0 NA Intergenic L2a|LINE|L2 -8593 NM_001042749 10735 Hs.624663 XM_005262357 ENSG00000101972 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 2945 chr2 231982549 231986283 + 0 NA intron (NM_000867, intron 2 of 3) AluSx|SINE|Alu 5408 NM_000867 3357 Hs.421649 XM_005246520 ENSG00000135914 HTR2B 5-HT(2B)|5-HT2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled protein-coding 2248 chr4 95610637 95613539 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -67040 NM_001203 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 577 chr17 78762929 78764248 + 0 NA intron (NM_020761, intron 6 of 33) L1MEa|LINE|L1 -202053 NM_024591 79643 Hs.514560 XM_005257668 ENSG00000176108 CHMP6 VPS20 charged multivesicular body protein 6 protein-coding 1137 chr8 8128061 8129121 + 0 NA Intergenic Intergenic 42499 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 2809 chr14 54801630 54803405 + 0 NA Intergenic L1MD2|LINE|L1 -61156 NM_001130851 1033 Hs.84113 XM_005267257 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin-dependent kinase inhibitor 3 protein-coding 1227 chr8 67429692 67430569 + 0 NA 3' UTR (NM_152765, exon 6 of 6) 3' UTR (NM_152765, exon 6 of 6) 24639 NM_152765 254778 Hs.268869 XM_005251206 ENSG00000169085 C8orf46 - chromosome 8 open reading frame 46 protein-coding 1417 chr1 92201239 92204001 + 0 NA intron (NR_036634, intron 5 of 17) intron (NR_036634, intron 5 of 17) 149216 NM_003243 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 216 chr11 66742541 66744171 + 0 NA intron (NM_001136485, intron 1 of 1) L2b|LINE|L2 602 NM_001136485 254439 Hs.232604 XM_005273875 ENSG00000173237 C11orf86 - chromosome 11 open reading frame 86 protein-coding 852 chr3 16109340 16111601 + 0 NA Intergenic Intergenic -105714 NM_054110 117248 Hs.411308 XM_005264851 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 643 chr19 36302797 36304319 + 0 NA exon (NM_021232, exon 2 of 11) exon (NM_021232, exon 2 of 11) 643 NM_021232 58510 Hs.515366 XM_005259123 ENSG00000250799 PRODH2 HSPOX1 proline dehydrogenase (oxidase) 2 protein-coding 1951 chr19 2468040 2470571 + 0 NA Intergenic MIRb|SINE|MIR -6818 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 2766 chr11 77549352 77550515 + 0 NA intron (NM_024684, intron 1 of 3) AluYk4|SINE|Alu 17725 NM_024684 28971 Hs.745040 XM_005273938 ENSG00000087884 AAMDC C11orf67|CK067 adipogenesis associated, Mth938 domain containing protein-coding 1120 chr8 25049927 25051564 + 0 NA intron (NM_024940, intron 1 of 51) MER82|DNA|TcMar-Tigger 8458 NM_024940 80005 Hs.195403 XM_005273650 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2928 chr2 71969264 71971073 + 0 NA Intergenic Intergenic 276336 NM_001130987 8291 Hs.252180 XM_005264584 ENSG00000135636 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 1475 chr10 33447874 33454441 + 0 NA Intergenic Intergenic 172676 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 1794 chr16 15607117 15618877 + 0 NA intron (NM_033201, intron 2 of 5) intron (NM_033201, intron 2 of 5) 16874 NM_001142469 89927 Hs.401798 NM_001142469 ENSG00000166780 C16orf45 - chromosome 16 open reading frame 45 protein-coding 1187 chr8 29351112 29351981 + 0 NA Intergenic L2|LINE|L2 -143279 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 2193 chr3 128142405 128146009 + 0 NA Intergenic L1ME1|LINE|L1 -38230 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 RP11-475N22.2 DNAJB8 antisense RNA 1 ncRNA 2636 chr9 119260862 119263752 + 0 NA intron (NM_001184734, intron 4 of 8) intron (NM_001184734, intron 4 of 8) -4255 NR_033973 100128505 Hs.675821 XR_242552 ENSG00000229105 RP11-264C15.2 - uncharacterized LOC100128505 ncRNA 2968 chr22 24632201 24634735 + 0 NA intron (NM_004121, intron 1 of 11) AluSx|SINE|Alu 7642 NM_004121 2687 Hs.437156 XM_005261557 ENSG00000099998 GGT5 GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 2092 chr20 54454868 54458941 + 0 NA Intergenic Intergenic 123624 NM_080617 140689 Hs.741877 XM_005260291 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 676 chr2 165379231 165380829 + 0 NA intron (NM_004490, intron 5 of 13) intron (NM_004490, intron 5 of 13) 98330 NM_004490 2888 Hs.411881 XM_005246477 ENSG00000115290 GRB14 - growth factor receptor-bound protein 14 protein-coding 1251 chr8 124084253 124086355 + 0 NA intron (NM_145647, intron 1 of 21) CpG 384 NM_001145088 93594 Hs.492716 XM_005251102 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family, member 31 protein-coding 277 chr12 63193115 63194427 + 0 NA intron (NM_020700, intron 3 of 9) 7SLRNA|srpRNA|srpRNA 134894 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 2456 chr8 32159384 32170943 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -133099 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 RP11-468C1.1 NRG1 intronic transcript 3 (non-protein coding) ncRNA 3191 chr8 89254109 89256779 + 0 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 84273 NM_005941 4325 Hs.546267 XM_005250921 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 1192 chr8 32081073 32086054 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 199829 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 (non-protein coding) ncRNA 879 chr3 118899602 118905113 + 0 NA intron (NM_006952, intron 1 of 7) AluSx1|SINE|Alu 9932 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 3017 chr4 95943790 95945102 + 0 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) 27063 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2640 chr9 131986605 131989134 + 0 NA Intergenic AluJo|SINE|Alu -47329 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5-like protein-coding 2700 chr1 172938429 172939990 + 0 NA Intergenic Intergenic 80894 NM_005092 8995 Hs.248197 NM_005092 TNFSF18 AITRL|GITRL|TL6|hGITRL tumor necrosis factor (ligand) superfamily, member 18 protein-coding 1095 chr7 79917268 79918303 + 0 NA Intergenic L1M1|LINE|L1 85970 NR_110075 101927269 Hs.583232 XR_242303 AC004862.6 - uncharacterized LOC101927269 ncRNA 3104 chr7 139424488 139428210 + 0 NA intron (NM_001113239, intron 1 of 14) intron (NM_001113239, intron 1 of 14) 51344 NM_022740 28996 Hs.731417 NM_001113239 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 1183 chr8 27693157 27696067 + 0 NA intron (NM_001278945, intron 1 of 7) intron (NM_001278945, intron 1 of 7) 1000 NM_018492 55872 Hs.104741 XM_005273570 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 2975 chr22 49779807 49781534 + 0 NA Intergenic Intergenic 270520 NR_026997 348645 Hs.133159 XR_244372 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 ncRNA 1444 chr10 33539071 33557628 + 0 NA intron (NM_001244972, intron 4 of 16) intron (NM_001244972, intron 4 of 16) 75484 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 2747 chr11 16917891 16920655 + 0 NA intron (NM_175058, intron 3 of 22) intron (NM_175058, intron 3 of 22) 116690 NM_175058 144100 Hs.12332 XM_005252801 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing, family A member 7 protein-coding 1883 chr17 39803501 39806156 + 0 NA Intergenic CpG -8377 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 1846 chr16 85205860 85209018 + 0 NA Intergenic Intergenic 36683 NR_033984 400548 Hs.592054 NR_033984 LOC400548 - uncharacterized LOC400548 ncRNA 2215 chr4 74887182 74892296 + 0 NA Intergenic Intergenic 14751 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 chemokine (C-X-C motif) ligand 3 protein-coding 2671 chr1 191476902 191480521 + 0 NA Intergenic L1MEe|LINE|L1 -648881 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G-protein signaling 18 protein-coding 133 chr10 72237657 72239327 + 0 NA promoter-TSS (NM_014431) promoter-TSS (NM_014431) -72 NM_014431 27143 Hs.202351 NM_014431 ENSG00000107719 PALD1 KIAA1274|PALD phosphatase domain containing, paladin 1 protein-coding 123 chr10 34926587 34927848 + 0 NA intron (NM_001184790, intron 2 of 22) intron (NM_001184790, intron 2 of 22) 177036 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 304 chr12 114210364 114212120 + 0 NA intron (NR_110026, intron 1 of 2) MLT1K|LTR|ERVL-MaLR 246 NR_110026 100506465 Hs.211461 XR_109132 ENSG00000249550 RP11-438N16.1 - uncharacterized LOC100506465 ncRNA 2600 chr8 145726920 145730078 + 0 NA promoter-TSS (NM_005309) promoter-TSS (NM_005309) -966 NM_005309 2875 Hs.103502 NM_005309 ENSG00000167701 GPT AAT1|ALT1|GPT1 glutamic-pyruvate transaminase (alanine aminotransferase) protein-coding 2515 chr8 27772099 27774944 + 0 NA intron (NM_173833, intron 4 of 8) intron (NM_173833, intron 4 of 8) -29888 NR_036249 100422828 NR_036249 MIR4287 - microRNA 4287 ncRNA 2417 chr7 84040892 84043100 + 0 NA Intergenic Intergenic -119796 NR_110080 101927378 Hs.539042 XR_242309 ENSG00000235139 AC003984.1 - uncharacterized LOC101927378 ncRNA 1631 chr12 14412632 14414648 + 0 NA Intergenic Intergenic -104926 NM_018179 55729 Hs.591151 XM_005253423 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1828 chr16 24710966 24714356 + 0 NA Intergenic L2|LINE|L2 -28388 NM_014494 27327 Hs.655057 XM_005255253 ENSG00000090905 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 2605 chr9 75446731 75456448 + 0 NA TTS (NM_138691) TTS (NM_138691) 116644 NM_000689 216 Hs.76392 XM_005251800 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family, member A1 protein-coding 2294 chr5 30098503 30099800 + 0 NA Intergenic L1PA7|LINE|L1 -703068 NR_104628 101929681 Hs.549659 XR_241753 LOC101929681 - uncharacterized LOC101929681 ncRNA 56 chr1 110363467 110365125 + 0 NA Intergenic Intergenic -57652 NM_024526 79574 Hs.485352 XM_005271193 ENSG00000198758 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 1369 chr1 92353927 92359223 + 0 NA intron (NM_001195684, intron 2 of 17) AluSx1|SINE|Alu -4739 NR_036634 7049 Hs.735919 NM_001195683 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 3006 chr3 129314825 129317264 + 0 NA intron (NM_015103, intron 1 of 35) MIR|SINE|MIR 9538 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 54 chr1 110325059 110326841 + 0 NA Intergenic Intergenic -19306 NM_024526 79574 Hs.485352 XM_005271193 ENSG00000198758 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 1151 chr8 17722275 17723001 + 0 NA intron (NM_201552, intron 8 of 8) intron (NM_201552, intron 8 of 8) 30275 NM_147203 2267 Hs.491143 XM_005273450 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 306 chr12 116843231 116845264 + 0 NA Intergenic AluSx1|SINE|Alu 21876 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 1204 chr8 38397668 38399329 + 0 NA Intergenic LTR48|LTR|ERV1 -12318 NM_207412 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 70 chr1 193676466 193677445 + 0 NA Intergenic Intergenic -521212 NM_003783 8707 Hs.518834 NM_003783 ENSG00000162630 B3GALT2 BETA3GALT2|GLCT2|beta3Gal-T2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 839 chr3 43907395 43910001 + 0 NA Intergenic Intergenic 176323 NM_016006 51099 Hs.19385 XM_005265197 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 2520 chr8 29352303 29358620 + 0 NA Intergenic Intergenic -147194 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 166 chr11 6947443 6948505 + 0 NA intron (NM_013250, intron 1 of 6) CpG 320 NM_013250 7762 Hs.523457 XM_005253130 ENSG00000149054 ZNF215 BAZ-2|BAZ2|ZKSCAN11|ZSCAN43 zinc finger protein 215 protein-coding 2225 chr4 184254207 184258082 + 0 NA Intergenic Intergenic -12565 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 88 chr10 33259170 33263908 + 0 NA Intergenic Tigger12c|DNA|TcMar-Tigger -14246 NM_002211 3688 Hs.643813 XM_005252448 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 1578 chr11 64349887 64351995 + 0 NA Intergenic Intergenic -7341 NM_144585 116085 Hs.700182 XM_005273740 ENSG00000197891 SLC22A12 OAT4L|RST|URAT1 solute carrier family 22 (organic anion/urate transporter), member 12 protein-coding 1009 chr6 3013450 3014339 + 0 NA intron (NM_000904, intron 4 of 6) intron (NM_000904, intron 4 of 6) 11111 NR_033884 401233 Hs.745279 NM_001013680 HTATSF1P2 - HIV-1 Tat specific factor 1 pseudogene 2 pseudo 30 chr1 12585031 12586341 + 0 NA Intergenic Intergenic 18386 NR_003022 677882 Hs.658450 NR_003022 SNORA59B ACA59 small nucleolar RNA, H/ACA box 59B snoRNA 403 chr15 65707228 65708448 + 0 NA intron (NM_020962, intron 1 of 19) intron (NM_020962, intron 1 of 19) 7572 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily, DCC subclass, member 4 protein-coding 466 chr16 18956948 18958209 + 0 NA Intergenic Intergenic -19852 NM_015092 23049 Hs.460179 XM_005255182 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1 phosphatidylinositol 3-kinase-related kinase protein-coding 134 chr10 89707549 89709086 + 0 NA intron (NM_000314, intron 5 of 8) intron (NM_000314, intron 5 of 8) 85122 NM_000314 5728 Hs.500466 NM_000314 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 phosphatase and tensin homolog protein-coding 3038 chr4 95916450 95917968 + 0 NA promoter-TSS (NM_001256792) promoter-TSS (NM_001256792) -174 NM_001256792 658 Hs.598475 XM_005263179 ENSG00000138696 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 2151 chr3 43892708 43895572 + 0 NA Intergenic L1MEc|LINE|L1 161765 NM_016006 51099 Hs.19385 XM_005265197 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 618 chr19 1174924 1178450 + 0 NA Intergenic AluY|SINE|Alu -2405 NM_014963 22904 Hs.408708 XM_005259519 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 848 chr3 10214986 10216015 + 0 NA intron (NM_001570, intron 1 of 12) AluSz|SINE|Alu 8937 NM_001570 3656 Hs.449207 XR_245126 ENSG00000134070 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 1829 chr16 24988222 24990574 + 0 NA intron (NM_001006634, intron 2 of 19) intron (NM_001006634, intron 2 of 19) 37301 NM_018054 55114 Hs.373793 XM_005255413 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 1904 chr17 78762803 78769083 + 0 NA intron (NM_020761, intron 7 of 33) intron (NM_020761, intron 7 of 33) -199698 NM_024591 79643 Hs.514560 XM_005257668 ENSG00000176108 CHMP6 VPS20 charged multivesicular body protein 6 protein-coding 1629 chr12 14391467 14394403 + 0 NA Intergenic Intergenic -125631 NM_018179 55729 Hs.591151 XM_005253423 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1761 chr15 36934620 36937617 + 0 NA intron (NM_032499, intron 1 of 10) intron (NM_032499, intron 1 of 10) 3312 NM_032499 84529 Hs.48348 XM_005254719 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 2755 chr11 47357813 47360050 + 0 NA intron (NM_000256, intron 24 of 33) intron (NM_000256, intron 24 of 33) 15322 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 2196 chr3 148931454 148944915 + 0 NA intron (NR_046371, intron 1 of 17) intron (NR_046371, intron 1 of 17) 1648 NM_000096 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 1918 chr18 20861267 20865192 + 0 NA Intergenic AluJb|SINE|Alu 127440 NM_138375 91768 Hs.11108 NM_001100619 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 1323 chr9 132103128 132103652 + 0 NA Intergenic Intergenic 20095 NM_001012715 414318 Hs.449434 NM_001012715 C9orf106 bA65J3.5 chromosome 9 open reading frame 106 protein-coding 3237 chr9 89967969 89970342 + 0 NA Intergenic Intergenic -142988 NM_001288731 1612 Hs.693441 XM_005251755 ENSG00000196730 DAPK1 DAPK death-associated protein kinase 1 protein-coding 1455 chr10 34710314 34721280 + 0 NA intron (NM_001184790, intron 4 of 22) MER11B|LTR|ERVK 388456 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 3150 chr8 17672637 17676811 + 0 NA Intergenic Intergenic -16298 NM_001001925 57509 Hs.7946 XM_005273577 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2662 chrX 119867658 119871811 + 0 NA Intergenic AluJb|SINE|Alu -105729 NM_152692 29071 Hs.643920 NM_001011551 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|MST143|TNPS C1GALT1-specific chaperone 1 protein-coding 1492 chr10 89707232 89709613 + 0 NA intron (NM_000314, intron 5 of 8) AluSz|SINE|Alu 85227 NM_000314 5728 Hs.500466 NM_000314 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 phosphatase and tensin homolog protein-coding 3164 chr8 38362220 38365456 + 0 NA Intergenic Intergenic 22342 NM_207412 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 2729 chr10 34770653 34774461 + 0 NA intron (NM_001184790, intron 3 of 22) L2a|LINE|L2 331696 NM_001184791 56288 Hs.131489 XM_005252527 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 703 chr2 61692306 61694447 + 0 NA intron (NM_014709, intron 1 of 79) AluSq|SINE|Alu 4473 NM_014709 9736 Hs.644708 XM_005264661 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 1134 chr8 6691707 6693091 + 0 NA promoter-TSS (NR_045217) promoter-TSS (NR_045217) -677 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 1100 chr7 95116957 95118395 + 0 NA intron (NM_145872, intron 1 of 2) intron (NM_145872, intron 1 of 2) 2463 NM_145872 51666 Hs.737518 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 2885 chr18 14224547 14226188 + 0 NA intron (NR_040113, intron 15 of 15) SVA_A|Other|Other 46271 NR_040113 440482 Hs.632352 NM_001029999 ANKRD20A5P ANKRD20A5 ankyrin repeat domain 20 family, member A5, pseudogene pseudo 2861 chr17 49511982 49514229 + 0 NA Intergenic Intergenic 175208 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit (SSU) processome component homolog (yeast) protein-coding 1377 chr1 153679636 153683230 + 0 NA Intergenic Intergenic -19134 NM_023015 65123 Hs.516522 XM_005245459 ENSG00000143624 INTS3 C1orf193|C1orf60|INT3|SOSS-A integrator complex subunit 3 protein-coding 3106 chr7 11694280 11696348 + 0 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 176510 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin, type I, domain containing 7A protein-coding 2488 chr8 6691576 6693578 + 0 NA promoter-TSS (NR_045217) promoter-TSS (NR_045217) -499 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 1461 chr10 128073067 128077914 + 0 NA intron (NM_001288974, intron 1 of 18) intron (NM_001288974, intron 1 of 18) 1637 NM_001288974 8038 Hs.741333 XM_005270188 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 185 chr11 46737761 46741143 + 0 NA Intergenic AluJr|SINE|Alu -1291 NM_000506 2147 Hs.655207 NM_000506 ENSG00000180210 F2 PT|RPRGL2|THPH1 coagulation factor II (thrombin) protein-coding 2487 chr8 1968610 1970628 + 0 NA Intergenic Intergenic -23539 NM_003970 9172 Hs.443683 XM_005266036 ENSG00000036448 MYOM2 TTNAP myomesin 2 protein-coding 3188 chr8 73018926 73020169 + 0 NA Intergenic Intergenic -31728 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS transient receptor potential cation channel, subfamily A, member 1 protein-coding 1719 chr14 56297454 56300395 + 0 NA Intergenic MER63B|DNA|hAT-Blackjack -35532 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 2716 chr10 33584833 33590855 + 0 NA intron (NM_001244972, intron 2 of 16) intron (NM_001244972, intron 2 of 16) 35989 NM_001244972 8829 Hs.653996 NM_001024628 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 4 chr1 81000597 81003216 + 0 NA Intergenic Intergenic -1264176 NM_012302 23266 Hs.649282 XM_005270666 ENSG00000117114 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 1985 chr2 42357684 42372189 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -31554 NM_001145076 27436 Hs.713173 XM_005264267 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 2669 chrY 127476 130209 + 0 NA Intergenic LTR8|LTR|ERV1 -14149 NR_028057 55344 Hs.522568 NM_018390 PLCXD1 - phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 1691 chr14 102754926 102764737 + 0 NA intron (NM_001272011, intron 1 of 10) AluSp|SINE|Alu 11706 NM_001272011 5891 Hs.104119 NM_001272011 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1 MOK protein kinase protein-coding 2003 chr2 15920727 15923489 + 0 NA Intergenic Intergenic 91202 NR_110201 101926966 Hs.502835 XR_241275 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA