PeakID (cmd=annotatePeaks.pl sample1_uniq_peaks.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
1801	chr1	231709833	231714385	+	0	NA	intron (NR_028398, intron 3 of 10)	AluSx|SINE|Alu	35727	NR_034037	100287814	Hs.25555	NR_034037	ENSG00000229228	LINC00582	-	long intergenic non-protein coding RNA 582	ncRNA
5006	chrX	46637215	46638181	+	0	NA	Intergenic	MER4C|LTR|ERV1	-19091	NM_001257291	84679	Hs.91389	XM_005272680		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
3074	chr6	158825914	158827701	+	0	NA	intron (NM_001007466, intron 1 of 12)	LTR14B|LTR|ERVK	93115	NM_020245	56995	Hs.486993	XM_005267057	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
3509	chr1	84766668	84769270	+	0	NA	promoter-TSS (NM_001134664)	promoter-TSS (NM_001134664)	-365	NM_001134664	148418	Hs.591445	NM_001010971	ENSG00000203943	SAMD13	RP11-376N17.1	sterile alpha motif domain containing 13	protein-coding
4863	chr7	85349176	85349791	+	0	NA	Intergenic	Intergenic	-598236	NM_152754	223117	Hs.201340	XM_005250229	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
3163	chr6	114139087	114141475	+	0	NA	Intergenic	Intergenic	-38246	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
1178	chr5	93697217	93699640	+	0	NA	intron (NM_001145678, intron 20 of 20)	L2c|LINE|L2	-251024	NM_001163418	83989	Hs.600086	XM_005272103	ENSG00000113391	FAM172A	C5orf21	family with sequence similarity 172, member A	protein-coding
4628	chr5	67691085	67693670	+	0	NA	Intergenic	Intergenic	103981	NM_001242466	5295	Hs.734132	XM_005248542	ENSG00000145675	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
1387	chr7	365965	368347	+	0	NA	Intergenic	Intergenic	37020	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
1932	chr11	119991377	119996705	+	0	NA	intron (NM_012101, intron 4 of 8)	MIRc|SINE|MIR	14822	NM_012101	23650	Hs.504115	XM_005271487	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
458	chr14	53307018	53308729	+	0	NA	Intergenic	Intergenic	-49487	NM_198066	64841	Hs.478025	XM_005268012	ENSG00000100522	GNPNAT1	GNPNAT|Gpnat1	glucosamine-phosphate N-acetyltransferase 1	protein-coding
2634	chr20	31050729	31056662	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	17690	NM_080616	140688	Hs.729596	XM_005260282	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
1785	chr1	214160086	214163093	+	0	NA	promoter-TSS (NM_002763)	promoter-TSS (NM_002763)	-255	NM_002763	5629	Hs.744931	XM_005273194	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding
4361	chr21	44757449	44766776	+	0	NA	Intergenic	Intergenic	-10193	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	AP001046.4|C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
1250	chr6	136752607	136765258	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	29081	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
2507	chr2	109203389	109206738	+	0	NA	5' UTR (NM_001193488, exon 1 of 10)	5' UTR (NM_001193488, exon 1 of 10)	141	NM_001193488	3987	Hs.613268	XM_005263946	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
4893	chr7	137636874	137640353	+	0	NA	intron (NM_001243523, intron 1 of 3)	intron (NM_001243523, intron 1 of 3)	519	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
3957	chr15	79007248	79008750	+	0	NA	Intergenic	L2c|LINE|L2	-36380	NR_036495	646938	Hs.449783	NR_036495	ENSG00000238166	LOC646938	-	TBC1 domain family, member 2B pseudogene	pseudo
1630	chr1	44512797	44517046	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-17757	NM_001024845	6536	Hs.442590	XM_005271145	ENSG00000196517	SLC6A9	GLYT1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding
3497	chr1	47646388	47648776	+	0	NA	Intergenic	Intergenic	2660	NR_047498	100874253	Hs.435758	NR_047498	ENSG00000224805	LINC00853	PDZK1IP1-AS1|ncRNA-a4	long intergenic non-protein coding RNA 853	ncRNA
4340	chr20	39317331	39319024	+	0	NA	promoter-TSS (NM_005461)	promoter-TSS (NM_005461)	-297	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
3185	chr6	150738579	150741064	+	0	NA	Intergenic	Intergenic	49793	NM_001164695	389434	Hs.310225	XM_005266977	ENSG00000009765	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
3109	chr6	21730520	21734559	+	0	NA	intron (NR_015410, intron 2 of 11)	AluSg|SINE|Alu	65864	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
3919	chr15	23717038	23718972	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	89273	NR_039731	100616275		NR_039731	ENSG00000265673	MIR4508	-	microRNA 4508	ncRNA
728	chr2	72440624	72443211	+	0	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-66926	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
1244	chr6	85556365	85559294	+	0	NA	Intergenic	Intergenic	-83875	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
1638	chr1	144505610	144508706	+	0	NA	intron (NR_024584, intron 2 of 3)	intron (NR_024584, intron 2 of 3)	14811	NR_024584	728875	Hs.662922	NR_024584	ENSG00000236943	RP11-640M9.1	-	uncharacterized LOC728875	ncRNA
3936	chr15	56331985	56333657	+	0	NA	Intergenic	Intergenic	-46877	NM_006154	4734	Hs.1565	XM_005254406	ENSG00000069869	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
29	chr1	16393233	16395775	+	0	NA	intron (NM_182623, intron 1 of 6)	MIR3|SINE|MIR	5623	NM_182623	348487	Hs.126825	NM_182623	ENSG00000185519	FAM131C	C1orf117|RP11-5P18.9	family with sequence similarity 131, member C	protein-coding
350	chr12	22382146	22384015	+	0	NA	intron (NM_003034, intron 4 of 4)	intron (NM_003034, intron 4 of 4)	104568	NM_003034	6489	Hs.408614	XM_005253469	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
4087	chr18	47374773	47376539	+	0	NA	intron (NM_001080467, intron 32 of 39)	intron (NM_001080467, intron 32 of 39)	35263	NR_003003	677769		NR_003003		SCARNA17	U91	small Cajal body-specific RNA 17	ncRNA
1969	chr11	111797877	111802440	+	0	NA	intron (NM_001278542, intron 1 of 5)	intron (NM_001278542, intron 1 of 5)	2290	NM_001278542	85458	Hs.655626	XM_005277726	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
1810	chr1	240759413	240762167	+	0	NA	intron (NM_022469, intron 1 of 1)	intron (NM_022469, intron 1 of 1)	14672	NM_022469	64388	Hs.98206	XM_005273226	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
2203	chr15	64361956	64365587	+	0	NA	TTS (NM_001014812)	TTS (NM_001014812)	22436	NM_032231	84191	Hs.439548	NM_001014812	ENSG00000166797	FAM96A	-	family with sequence similarity 96, member A	protein-coding
4358	chr21	34782831	34787571	+	0	NA	intron (NM_005534, intron 1 of 6)	intron (NM_005534, intron 1 of 6)	9999	NM_005534	3460	Hs.634632	XM_005260969	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
2754	chr3	62859172	62860978	+	0	NA	intron (NM_003716, intron 1 of 29)	CpG	989	NM_003716	8618	Hs.654933	XM_005265519	ENSG00000163618	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
1546	chr9	124112306	124114304	+	0	NA	intron (NR_073037, intron 5 of 7)	intron (NR_073037, intron 5 of 7)	19277	NR_073037	2040	Hs.253903	XM_005251798	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
2994	chr5	96049292	96052461	+	0	NA	intron (NM_001284212, intron 1 of 27)	intron (NM_001284212, intron 1 of 27)	12334	NM_001284212	831	Hs.436186	NM_001042440	ENSG00000153113	CAST	BS-17	calpastatin	protein-coding
4003	chr16	73102012	73103306	+	0	NA	Intergenic	Intergenic	-10125	NM_001164766	463	Hs.598297	XM_005255957	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
3256	chr7	86945371	86949270	+	0	NA	Intergenic	Intergenic	27488	NR_015381	11257	Hs.274329	NR_015381	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1	TP53 target 1 (non-protein coding)	ncRNA
311	chr12	7175141	7177207	+	0	NA	intron (NM_001734, intron 11 of 11)	intron (NM_001734, intron 11 of 11)	8194	NM_201442	716	Hs.458355	XM_005253760	ENSG00000182326	C1S	-	complement component 1, s subcomponent	protein-coding
4537	chr4	41361959	41364419	+	0	NA	intron (NM_014988, intron 1 of 26)	CpG	387	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4836	chr7	2438789	2440678	+	0	NA	Intergenic	Intergenic	-3462	NM_001243795	55501	Hs.744987	NM_001243794	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate (chondroitin 4) sulfotransferase 12	protein-coding
3844	chr12	125204312	125205884	+	0	NA	Intergenic	L2a|LINE|L2	143421	NM_005505	949	Hs.731377	XM_005253633	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
825	chr20	6754140	6758894	+	0	NA	intron (NM_001200, intron 2 of 2)	intron (NM_001200, intron 2 of 2)	7772	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
917	chr3	7525970	7527175	+	0	NA	intron (NM_000844, intron 7 of 9)	MLT1F2|LTR|ERVL-MaLR	531422	NR_110131	101927394	Hs.517767	XR_245179	ENSG00000227110	AC087859.1	-	uncharacterized LOC101927394	ncRNA
3431	chrX	107682344	107686632	+	0	NA	intron (NM_033380, intron 1 of 50)	intron (NM_033380, intron 1 of 50)	1414	NM_033380	1287	Hs.369089	XM_005262070	ENSG00000188153	COL4A5	ASLN|ATS|CA54	collagen, type IV, alpha 5	protein-coding
4977	chr9	117110493	117112320	+	0	NA	intron (NM_030767, intron 15 of 21)	intron (NM_030767, intron 15 of 21)	19337	NM_000608	5005	Hs.719954	NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
495	chr15	68842995	68846021	+	0	NA	Intergenic	MIR3|SINE|MIR	-26800	NM_006091	10391	Hs.551213	XM_005254124	ENSG00000103647	CORO2B	CLIPINC	coronin, actin binding protein, 2B	protein-coding
4501	chr3	159851368	159853117	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	72637	NR_108088	101928376	Hs.565865	XR_241609	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
3889	chr14	54308191	54309848	+	0	NA	Intergenic	AluJb|SINE|Alu	106183	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
3302	chr8	40341519	40346411	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	332978	NM_020130	56892	Hs.745031	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
2086	chr13	40975868	40977799	+	0	NA	intron (NR_024506, intron 5 of 5)	(A)n|Simple_repeat|Simple_repeat	78310	NR_024507	646982	Hs.287664	NR_024505		LINC00598	RP11-350A18.1|TTL	long intergenic non-protein coding RNA 598	ncRNA
1322	chr6	82392953	82394371	+	0	NA	Intergenic	Intergenic	68766	NM_017633	55603	Hs.10784	XM_005248731	ENSG00000112773	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
1816	chr10	6777877	6784419	+	0	NA	Intergenic	Intergenic	39994	NR_108074	100652997	Hs.255086	XR_132575		LINC00706	-	long intergenic non-protein coding RNA 706	ncRNA
2460	chr2	43423767	43428606	+	0	NA	Intergenic	AluSz|SINE|Alu	27559	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
4293	chr20	34356616	34358133	+	0	NA	Intergenic	L2c|LINE|L2	-2549	NM_016436	51230	Hs.517044	XM_005260420	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
2699	chr22	32345649	32351796	+	0	NA	intron (NM_003405, intron 1 of 1)	intron (NM_003405, intron 1 of 1)	-7386	NM_015372	25775	Hs.627602	XM_005261497	ENSG00000128254	C22orf24	HSN44A4A	chromosome 22 open reading frame 24	protein-coding
1259	chr6	2475484	2477750	+	0	NA	Intergenic	Intergenic	158681	NM_152554	154386	Hs.680574	NM_152554		C6orf195	RP11-145H9.2|bA145H9.2	chromosome 6 open reading frame 195	protein-coding
3824	chr12	92997437	92998159	+	0	NA	Intergenic	Intergenic	-98821	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
3574	chr1	201672138	201673743	+	0	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-15696	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
2976	chr5	64775068	64779895	+	0	NA	5' UTR (NM_197941, exon 1 of 25)	5' UTR (NM_197941, exon 1 of 25)	223	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif, 6	protein-coding
3475	chr1	16401391	16404941	+	0	NA	Intergenic	Intergenic	-3039	NM_182623	348487	Hs.126825	NM_182623	ENSG00000185519	FAM131C	C1orf117|RP11-5P18.9	family with sequence similarity 131, member C	protein-coding
4319	chr20	11523895	11525698	+	0	NA	Intergenic	Intergenic	-270765	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
3421	chrX	56078643	56080291	+	0	NA	Intergenic	L1PA4|LINE|L1	-179355	NM_007250	11279	Hs.646614	XM_005261977	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
3238	chr7	32201333	32203767	+	0	NA	intron (NM_001191058, intron 3 of 18)	intron (NM_001191058, intron 3 of 18)	-91505	NM_005020	5137	Hs.728862	XM_005249766	ENSG00000154678	PDE1C	Hcam3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
2274	chr17	55607009	55615923	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	211224	NM_001282544	101927581	Hs.540784	XM_005257905	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
2002	chr12	49593652	49596524	+	0	NA	Intergenic	Intergenic	-11981	NM_006009	7846	Hs.654422	XM_005269143	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin, alpha 1a	protein-coding
4902	chr8	1733630	1735638	+	0	NA	3' UTR (NM_018941, exon 3 of 3)	3' UTR (NM_018941, exon 3 of 3)	22764	NM_018941	2055	Hs.127675	XM_005266021	ENSG00000182372	CLN8	C8orf61|EPMR	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	protein-coding
4591	chr4	184825892	184827603	+	0	NA	5' UTR (NM_020225, exon 1 of 4)	5' UTR (NM_020225, exon 1 of 4)	238	NM_020225	56977	Hs.696657	XM_005263142	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
1203	chr5	136065038	136067295	+	0	NA	Intergenic	Intergenic	-365002	NM_001167576	57113	Hs.591263	XM_005272036	ENSG00000069018	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
4261	chr2	228091987	228093203	+	0	NA	non-coding (NR_102371, exon 12 of 14)	non-coding (NR_102371, exon 12 of 14)	63314	NM_000091	1285	Hs.570065	XM_005246275	ENSG00000169031	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
2088	chr13	73938405	73941378	+	0	NA	Intergenic	Intergenic	306961	NM_001730	688	Hs.508234	XM_005266508	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
1068	chr4	41656489	41658315	+	0	NA	intron (NM_001112720, intron 7 of 19)	intron (NM_001112720, intron 7 of 19)	42613	NM_001112720	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4429	chr3	49388421	49389979	+	0	NA	Intergenic	Intergenic	6591	NM_201397	2876	Hs.76686	NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
486	chr14	98917177	98920134	+	0	NA	Intergenic	LTR7|LTR|ERV1	-259295	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
2134	chr14	36343809	36349733	+	0	NA	Intergenic	MIR|SINE|MIR	51174	NM_032352	84312	Hs.525299	XM_005268128	ENSG00000100916	BRMS1L	BRMS1	breast cancer metastasis-suppressor 1-like	protein-coding
1354	chr6	136765467	136769521	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	20519	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
4066	chr18	6728887	6730374	+	0	NA	Intergenic	Intergenic	-104802	NM_001010000	79822	Hs.183114	XM_005258144	ENSG00000088756	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
4213	chr2	103603972	103604966	+	0	NA	Intergenic	Intergenic	225979	NM_144632	130827	Hs.436203	XM_005263874	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
8	chr1	144325401	144328293	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	13926	NR_109754	728855	Hs.662922	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	ncRNA
3239	chr7	38670090	38671614	+	0	NA	intron (NM_139316, intron 1 of 19)	CpG	315	NM_001635	273	Hs.592182	XM_005249702	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
2359	chr18	56214432	56222574	+	0	NA	intron (NM_052947, intron 4 of 12)	MLT1C|LTR|ERVL-MaLR	77686	NM_052947	115701	Hs.628152	XM_005266646	ENSG00000198796	ALPK2	HAK	alpha-kinase 2	protein-coding
2045	chr12	49252978	49263584	+	0	NA	intron (NM_014470, intron 2 of 4)	intron (NM_014470, intron 2 of 4)	1372	NM_014470	27289	Hs.124940	NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
686	chr2	18228309	18230347	+	0	NA	Intergenic	MIRc|SINE|MIR	169404	NM_002252	3790	Hs.414489	XM_005262614	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
3149	chr6	82405611	82408218	+	0	NA	Intergenic	Intergenic	55514	NM_017633	55603	Hs.10784	XM_005248731	ENSG00000112773	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
943	chr3	55225363	55226899	+	0	NA	Intergenic	Intergenic	-264059	NM_020678	57408	Hs.591668	XM_005265337	ENSG00000144771	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
1887	chr10	78040695	78044016	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	499836	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
4258	chr2	225774337	225776127	+	0	NA	intron (NM_014689, intron 3 of 55)	MIR|SINE|MIR	100025	NR_039641	100616207		NR_039641		MIR4439	-	microRNA 4439	ncRNA
1585	chrX	76221902	76224998	+	0	NA	Intergenic	Intergenic	-83665	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
4709	chr6	37207414	37208708	+	0	NA	intron (NM_145316, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	17352	NM_145316	221468	Hs.520101	XM_005248907	ENSG00000172738	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
4993	chr9	137561003	137564250	+	0	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	28975	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	collagen, type V, alpha 1	protein-coding
4474	chr3	112389547	112391747	+	0	NA	Intergenic	Intergenic	-30657	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
2705	chr3	39180058	39197807	+	0	NA	intron (NM_033027, intron 1 of 4)	intron (NM_033027, intron 1 of 4)	6170	NM_033027	64651	Hs.370950	XM_005265403	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine-serine-rich nuclear protein 1	protein-coding
690	chr2	23430102	23432190	+	0	NA	Intergenic	Intergenic	-177152	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
61	chr1	103914016	103915103	+	0	NA	Intergenic	AluJo|SINE|Alu	153546	NM_001286997	101928436	Hs.558999	XR_246387		LOC101928436	RP11-153F1.1|RP11-347K2.2	uncharacterized LOC101928436	protein-coding
4475	chr3	112400343	112402257	+	0	NA	Intergenic	Intergenic	-41310	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
4094	chr18	55473662	55475189	+	0	NA	Intergenic	Intergenic	-4098	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase, aminophospholipid transporter, class I, type 8B, member 1	protein-coding
3540	chr1	168210788	168214365	+	0	NA	TTS (NM_199344)	TTS (NM_199344)	4092	NR_026844	84832	Hs.537067	NR_026844	ENSG00000214262	ANKRD36BP1	ANKRD26L1|ANKRD36BL1	ankyrin repeat domain 36B pseudogene 1	pseudo
4704	chr6	13302211	13304831	+	0	NA	Intergenic	Intergenic	-7703	NM_001242698	100130357	Hs.657498	XM_005248776		RP1-257A7.4	-	uncharacterized LOC100130357	protein-coding
2394	chr2	37872400	37887413	+	0	NA	intron (NM_001270436, intron 1 of 1)	AluJr|SINE|Alu	19436	NM_006449	10602	Hs.369574	NM_001270436	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
1266	chr6	10470967	10472956	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	32011	NR_049872	100846998		NR_049872	ENSG00000263705	MIR5689	-	microRNA 5689	ncRNA
3419	chrX	43930173	43933527	+	0	NA	Intergenic	Intergenic	-98929	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
3326	chr9	38436627	38440034	+	0	NA	Intergenic	Intergenic	-13886	NM_001007563	347252	Hs.349705	NM_001007563		IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
2654	chr21	34782286	34787713	+	0	NA	intron (NM_005534, intron 1 of 6)	AluSx|SINE|Alu	9797	NM_005534	3460	Hs.634632	XM_005260969	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
4209	chr2	100937656	100939151	+	0	NA	exon (NM_198461, exon 1 of 12)	exon (NM_198461, exon 1 of 12)	792	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
4144	chr2	19504948	19506308	+	0	NA	Intergenic	L1PA2|LINE|L1	-42562	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
4784	chr6	76078180	76079151	+	0	NA	intron (NM_015687, intron 2 of 5)	MER5B|DNA|hAT-Charlie	83935	NR_040081	100506804	Hs.743708	NR_040081		RP1-234P15.4	-	uncharacterized LOC100506804	ncRNA
3627	chr10	52362933	52366163	+	0	NA	intron (NM_147156, intron 1 of 10)	intron (NM_147156, intron 1 of 10)	19189	NM_147156	259230	Hs.654698	XM_005269675	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
39	chr1	31996255	31997620	+	0	NA	Intergenic	PRIMA4-int|LTR|ERV1	12901	NR_027085	284551	Hs.658659	NR_027085	ENSG00000223907	RP11-439L8.4	-	uncharacterized LOC284551	ncRNA
558	chr16	66136324	66138337	+	0	NA	Intergenic	Intergenic	-263195	NM_001795	1003	Hs.76206	XM_005255757	ENSG00000179776	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
3200	chr6	167615894	167618362	+	0	NA	Intergenic	Intergenic	33047	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
573	chr17	9273541	9275194	+	0	NA	intron (NR_033656, intron 5 of 5)	intron (NR_033656, intron 5 of 5)	204908	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
2710	chr3	46964238	46992897	+	0	NA	intron (NM_001277074, intron 2 of 6)	intron (NM_001277074, intron 2 of 6)	39424	NR_102269	151903	Hs.745081	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
1084	chr4	77890490	77891980	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	20340	NM_018243	55752	Hs.128199	XM_005263120	ENSG00000138758	SEPT11	-	septin 11	protein-coding
4570	chr4	129697282	129699356	+	0	NA	Intergenic	MIRb|SINE|MIR	-32459	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
3446	chr1	20806071	20808532	+	0	NA	Intergenic	MIR|SINE|MIR	5427	NM_018584	55450	Hs.731383	NM_018584	ENSG00000162545	CAMK2N1	PRO1489|RP11-401M16.1	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding
638	chr19	28915493	28917594	+	0	NA	Intergenic	Tigger1a_Art|DNA|TcMar-Tigger	-539495	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
2350	chr18	47073714	47075863	+	0	NA	Intergenic	L2a|LINE|L2	-13639	NM_006033	9388	Hs.465102	XM_005258390	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase, endothelial	protein-coding
2479	chr2	69477526	69484383	+	0	NA	Intergenic	Intergenic	133432	NM_001244710	2673	Hs.580300	NM_001244710	ENSG00000198380	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
1	chr1	240513834	240517789	+	0	NA	intron (NM_020066, intron 13 of 17)	AluSx1|SINE|Alu	259651	NM_022469	64388	Hs.98206	XM_005273226	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
3218	chr7	137634665	137644677	+	0	NA	intron (NM_001243523, intron 1 of 3)	intron (NM_001243523, intron 1 of 3)	1577	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
506	chr15	38994053	38995535	+	0	NA	Intergenic	LTR22A|LTR|ERVK	5995	NM_207444	400359	Hs.448785	NM_207444	ENSG00000175779	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
4184	chr2	63967813	63968490	+	0	NA	Intergenic	LTR90A|LTR|LTR	-99947	NM_001001521	7360	Hs.516217	XM_005264536	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
2937	chr5	90193451	90196735	+	0	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	340476	NR_003149	84059	Hs.591777	XM_005248613	ENSG00000164199	GPR98	FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b	G protein-coupled receptor 98	protein-coding
661	chr2	151322142	151324629	+	0	NA	Intergenic	Intergenic	20824	NM_005168	390	Hs.713765	NM_001254738	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
3157	chr6	108909513	108911646	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	28510	NM_001455	2309	Hs.220950	XM_005266867	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
2845	chr4	129480126	129486338	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-247546	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
2482	chr2	72796897	72800612	+	0	NA	intron (NM_015189, intron 7 of 21)	intron (NM_015189, intron 7 of 21)	254423	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
2719	chr3	118258165	118260467	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-402607	NR_046230	100506765	Hs.660823	XR_241458	ENSG00000239877	IGSF11-AS1	RP4-635B5.1	IGSF11 antisense RNA 1	ncRNA
1935	chr11	2798407	2801591	+	0	NA	intron (NM_181798, intron 15 of 15)	intron (NM_181798, intron 15 of 15)	-78771	NR_002728	10984	Hs.741312	NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)	ncRNA
2690	chr22	20254492	20256739	+	0	NA	exon (NM_023004, exon 1 of 2)	exon (NM_023004, exon 1 of 2)	201	NM_023004	65078	Hs.30868	NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
581	chr17	20165714	20167745	+	0	NA	intron (NM_001243439, intron 12 of 14)	L1PA5|LINE|L1	-57758	NR_023380	348254	Hs.462475	NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
2727	chr3	159854961	159863994	+	0	NA	intron (NR_108088, intron 3 of 9)	MLT1A0|LTR|ERVL-MaLR	65402	NR_108088	101928376	Hs.565865	XR_241609	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
4046	chr17	58163834	58166074	+	0	NA	intron (NR_030732, intron 1 of 2)	intron (NR_030732, intron 1 of 2)	874	NR_030732	645638	Hs.463652	NR_030732	ENSG00000261040	LOC645638	-	WDNM1-like pseudogene	pseudo
4676	chr5	142870380	142872710	+	0	NA	Intergenic	Intergenic	-56468	NM_001018074	2908	Hs.122926	XM_005268419	ENSG00000113580	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
4200	chr2	76388881	76389524	+	0	NA	Intergenic	Intergenic	-451091	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
4567	chr4	129441688	129443600	+	0	NA	Intergenic	Intergenic	-232660	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
678	chr2	1746463	1748467	+	0	NA	intron (NM_012293, intron 1 of 22)	CpG	826	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
4328	chr20	19944317	19946108	+	0	NA	intron (NM_001242581, intron 5 of 11)	intron (NM_001242581, intron 5 of 11)	-52722	NM_181528	51126	Hs.708298	XM_005260717	ENSG00000173418	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
3862	chr13	49687063	49688503	+	0	NA	intron (NM_014923, intron 1 of 23)	intron (NM_014923, intron 1 of 23)	3344	NM_014923	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
1517	chr9	26778587	26779966	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	113550	NM_024828	79886	Hs.178357	XM_005251581	ENSG00000120159	CAAP1	C9orf82|CAAP|RP11-337A23.1	caspase activity and apoptosis inhibitor 1	protein-coding
2808	chr3	140184889	140188494	+	0	NA	intron (NM_022131, intron 8 of 16)	intron (NM_022131, intron 8 of 16)	40940	NR_108084	101927808	Hs.581236	XR_241584	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
3025	chr5	142870065	142872820	+	0	NA	Intergenic	Intergenic	-56365	NM_001018074	2908	Hs.122926	XM_005268419	ENSG00000113580	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
1975	chr11	119997843	120000757	+	0	NA	intron (NM_012101, intron 1 of 8)	intron (NM_012101, intron 1 of 8)	9563	NM_012101	23650	Hs.504115	XM_005271487	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
2910	chr4	154109476	154111796	+	0	NA	intron (NM_001130067, intron 1 of 11)	intron (NM_001130067, intron 1 of 11)	-14962	NM_015271	23321	Hs.435711	XM_005262872	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
1973	chr11	118757584	118759874	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	4254	NM_001716	643	Hs.113916	XM_005271645		CXCR5	BLR1|CD185|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding
1991	chr12	15841288	15844785	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	99474	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
927	chr3	24729388	24731269	+	0	NA	Intergenic	Intergenic	-167402	NR_039955	100616448		NR_039955	ENSG00000265028	MIR4792	miR-4792	microRNA 4792	ncRNA
3180	chr6	143159168	143161413	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	106048	NM_006734	3097	Hs.510172	XM_005266956	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
2302	chr17	58163738	58166439	+	0	NA	intron (NR_030732, intron 1 of 2)	intron (NR_030732, intron 1 of 2)	740	NR_030732	645638	Hs.463652	NR_030732	ENSG00000261040	LOC645638	-	WDNM1-like pseudogene	pseudo
4827	chr6	168723096	168724502	+	0	NA	Intergenic	L1MB7|LINE|L1	-3365	NM_214462	168002	Hs.673059	XM_005266837	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|RP11-503C24.7|bA503C24.7	dishevelled-binding antagonist of beta-catenin 2	protein-coding
3849	chr12	132220970	132222964	+	0	NA	intron (NM_001261411, intron 7 of 18)	intron (NM_001261411, intron 7 of 18)	26335	NM_001261411	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
2745	chr3	47007657	47014586	+	0	NA	intron (NM_001277074, intron 1 of 6)	intron (NM_001277074, intron 1 of 6)	6870	NR_102269	151903	Hs.745081	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
652	chr19	46830755	46833159	+	0	NA	intron (NM_152796, intron 10 of 11)	MLT1F1-int|LTR|ERVL-MaLR	-18294	NM_006247	5536	Hs.654604	XM_005259037	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5, catalytic subunit	protein-coding
2400	chr2	234588883	234621869	+	0	NA	intron (NM_001072, intron 1 of 4)	L1MA4|LINE|L1	3864	NM_001072	54578	Hs.554822	NM_001072	ENSG00000167165	UGT1A6	GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F	UDP glucuronosyltransferase 1 family, polypeptide A6	protein-coding
2034	chr12	19772535	19773967	+	0	NA	Intergenic	Intergenic	179736	NM_001267043	121536	Hs.126497	XR_242886		AEBP2	-	AE binding protein 2	protein-coding
4445	chr3	71306642	71308631	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-13320	NM_001244814	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
4405	chr3	187120943	187122259	+	0	NA	Intergenic	Intergenic	35433	NM_022147	64108	Hs.43388	NM_022147		RTP4	IFRG28	receptor (chemosensory) transporter protein 4	protein-coding
3851	chr13	73938659	73941128	+	0	NA	Intergenic	Intergenic	306963	NM_001730	688	Hs.508234	XM_005266508	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
2029	chr12	13131229	13134208	+	0	NA	promoter-TSS (NR_038920)	promoter-TSS (NR_038920)	-53	NR_038920	100506314	Hs.659383	XR_242880	ENSG00000247498	RP11-392P7.6	-	uncharacterized LOC100506314	ncRNA
3552	chr1	183513909	183514603	+	0	NA	exon (NM_201568, exon 16 of 22)	exon (NM_201568, exon 16 of 22)	45483	NM_001190794	4688	Hs.587558	XM_005245207	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
844	chr20	20678062	20680682	+	0	NA	intron (NM_020343, intron 1 of 39)	L1MB5|LINE|L1	13894	NM_020343	57186	Hs.472285	XM_005260768	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
4447	chr3	79844376	79845347	+	0	NA	Intergenic	L2a|LINE|L2	-27802	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
4552	chr4	83706118	83707443	+	0	NA	intron (NM_001037582, intron 1 of 4)	MER34B|LTR|ERV1	13230	NM_024906	79966	Hs.379191	NM_001037582	ENSG00000145284	SCD5	ACOD4|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
2723	chr3	153451726	153454272	+	0	NA	Intergenic	MER57D|LTR|ERV1	250715	NM_001101337	152118	Hs.58586	NM_001101337	ENSG00000237787	C3orf79	-	chromosome 3 open reading frame 79	protein-coding
4218	chr2	114575522	114576792	+	0	NA	Intergenic	MER76|LTR|ERVL	-61757	NM_025181	80255	Hs.632527	XM_005263799	ENSG00000115084	SLC35F5	-	solute carrier family 35, member F5	protein-coding
272	chr11	76773551	76775159	+	0	NA	Intergenic	Intergenic	-3637	NM_004055	726	Hs.248153	XM_005274206	ENSG00000149260	CAPN5	HTRA3|nCL-3	calpain 5	protein-coding
4930	chr9	100907928	100909169	+	0	NA	intron (NM_003389, intron 2 of 11)	intron (NM_003389, intron 2 of 11)	26626	NM_003389	7464	Hs.113094	NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin, actin binding protein, 2A	protein-coding
775	chr2	197267530	197268982	+	0	NA	intron (NM_020760, intron 2 of 28)	intron (NM_020760, intron 2 of 28)	143508	NR_110226	101927482	Hs.191841	XR_241372	ENSG00000229056	AC020571.3	-	uncharacterized LOC101927482	ncRNA
2518	chr2	134021972	134025290	+	0	NA	promoter-TSS (NR_110294)	promoter-TSS (NR_110294)	-136	NR_110294	101928161	Hs.661917	XR_244858	ENSG00000226953	AC010890.1	-	uncharacterized LOC101928161	ncRNA
20	chr1	5484202	5486236	+	0	NA	Intergenic	Intergenic	-138912	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
2376	chr19	31617232	31619616	+	0	NA	Intergenic	Intergenic	-22359	NR_026894	94023	Hs.220597	NR_026894		DKFZp566F0947	-	uncharacterized LOC94023	ncRNA
1983	chr11	130766102	130769479	+	0	NA	intron (NM_014758, intron 8 of 10)	intron (NM_014758, intron 8 of 10)	18592	NM_014758	399979	Hs.444024	XM_005271545	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
3100	chr6	11608876	11610913	+	0	NA	Intergenic	Intergenic	71434	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
3787	chr12	20119952	20121506	+	0	NA	Intergenic	Intergenic	-46890	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
4304	chr20	3336500	3338129	+	0	NA	intron (NM_001009984, intron 7 of 36)	intron (NM_001009984, intron 7 of 36)	50995	NM_001009984	25943	Hs.516853	XM_005260684	ENSG00000088854	C20orf194	-	chromosome 20 open reading frame 194	protein-coding
3562	chr1	197924560	197925485	+	0	NA	Intergenic	Intergenic	38505	NM_020204	56956	Hs.706475	XM_005245349	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
1627	chr1	22738512	22742346	+	0	NA	Intergenic	MIRb|SINE|MIR	-37915	NM_014870	9923	Hs.418966	NM_001083621	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
4180	chr2	56674987	56678140	+	0	NA	Intergenic	Intergenic	265305	NM_001080433	114800	Hs.117136	XM_005264122	ENSG00000055813	CCDC85A	-	coiled-coil domain containing 85A	protein-coding
4139	chr2	9449741	9452253	+	0	NA	intron (NM_003887, intron 3 of 27)	intron (NM_003887, intron 3 of 27)	104103	NM_003887	8853	Hs.555902	XM_005246181	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
468	chr14	68570253	68572897	+	0	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	285079	NM_133510	5890	Hs.172587	XM_005267961	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
3030	chr5	151275022	151276861	+	0	NA	intron (NM_000171, intron 1 of 8)	intron (NM_000171, intron 1 of 8)	28456	NM_000171	2741	Hs.121490	XM_005268411	ENSG00000145888	GLRA1	HKPX1|STHE	glycine receptor, alpha 1	protein-coding
1019	chr4	125352718	125355028	+	0	NA	Intergenic	Intergenic	280014	NM_001167882	57182	Hs.480694	NM_001167882	ENSG00000151458	ANKRD50	-	ankyrin repeat domain 50	protein-coding
700	chr2	31928777	31930599	+	0	NA	Intergenic	L2c|LINE|L2	-123648	NM_000348	6716	Hs.458345	NM_000348		SRD5A2	-	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	protein-coding
78	chr1	146152170	146153886	+	0	NA	intron (NR_104217, intron 2 of 17).2	intron (NR_104217, intron 2 of 17).2	-70263	NR_046188	200030	Hs.744018	XM_005272933	ENSG00000152042	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
3369	chr9	90399678	90401630	+	0	NA	intron (NR_027917, intron 4 of 4)	LTR5B|LTR|ERVK	12824	NR_027917	392360	Hs.690450	NM_001023564	ENSG00000188029	CTSL3P	CTSL3|HCTSL-s	cathepsin L family member 3, pseudogene	pseudo
413	chr13	24649626	24651143	+	0	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	-84471	NM_001166271	221178	Hs.595391	XM_005266289	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
294	chr11	115247271	115249448	+	0	NA	intron (NM_014333, intron 1 of 9)	intron (NM_014333, intron 1 of 9)	126882	NM_014333	23705	Hs.370510	XM_005271491	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
764	chr2	138045003	138046396	+	0	NA	intron (NM_001080427, intron 11 of 26)	intron (NM_001080427, intron 11 of 26)	297237	NM_001080427	80731	Hs.68533	XM_005263802	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
4953	chr9	78985919	78986602	+	0	NA	Intergenic	Intergenic	23184	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
2075	chr12	106423641	106425607	+	0	NA	Intergenic	Intergenic	109187	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
4582	chr4	157851582	157853171	+	0	NA	intron (NR_036641, intron 1 of 6)	intron (NR_036641, intron 1 of 6)	40170	NM_016205	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
1981	chr11	126214782	126217596	+	0	NA	TTS (NM_014026)	TTS (NM_014026)	9293	NR_033839	399972	Hs.585206	NR_033839		ST3GAL4-AS1	DCPS-AS1	ST3GAL4 antisense RNA 1 (head to head)	ncRNA
3638	chr10	5322128	5322916	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	83724	NM_001818	1109	Hs.567245	NM_001818	ENSG00000198610	AKR1C4	3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA	aldo-keto reductase family 1, member C4	protein-coding
2081	chr12	120050344	120053189	+	0	NA	intron (NM_001136534, intron 1 of 2)	intron (NM_001136534, intron 1 of 2)	20502	NM_001136534	387890	Hs.530965	XM_005253880	ENSG00000224982	TMEM233	DSPB2|IFITMD2	transmembrane protein 233	protein-coding
606	chr18	25642339	25647092	+	0	NA	intron (NM_001792, intron 2 of 15)	Arthur1C|DNA|hAT-Tip100	112730	NM_001792	1000	Hs.606106	XM_005258181	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
4416	chr3	25479381	25481384	+	0	NA	intron (NM_000965, intron 1 of 7)	intron (NM_000965, intron 1 of 7)	10548	NM_000965	5915	Hs.733004	XM_005265361	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RRB2	retinoic acid receptor, beta	protein-coding
3559	chr1	185614372	185616881	+	0	NA	Intergenic	Intergenic	-88057	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
2522	chr2	138828099	138830820	+	0	NA	Intergenic	Intergenic	107651	NM_001024075	3176	Hs.42151	XM_005263654	ENSG00000150540	HNMT	HMT|HNMT-S1|HNMT-S2	histamine N-methyltransferase	protein-coding
1855	chr10	19917146	19919459	+	0	NA	intron (NM_001142308, intron 36 of 39)	intron (NM_001142308, intron 36 of 39)	-187070	NM_001282736	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
432	chr13	75017771	75018944	+	0	NA	Intergenic	Intergenic	25047	NR_047005	100874151	Hs.743188	NR_047005	ENSG00000226240	LINC00381	RP11-512C24.2	long intergenic non-protein coding RNA 381	ncRNA
4235	chr2	161088020	161090557	+	0	NA	Intergenic	Intergenic	-32464	NM_001282388	3694	Hs.470399	XM_005246537	ENSG00000115221	ITGB6	-	integrin, beta 6	protein-coding
2415	chr2	134430712	134433364	+	0	NA	Intergenic	Intergenic	-106007	NM_207363	344148	Hs.537329	XM_005263659	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
708	chr2	38404974	38407275	+	0	NA	intron (NR_027252, intron 2 of 2)	L2|LINE|L2	47877	NR_027252	285154	Hs.353894	NR_027252	ENSG00000232973	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
2583	chr20	834324	838225	+	0	NA	Intergenic	Intergenic	11023	NM_031424	83541	Hs.574822	XM_005260854	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110, member A	protein-coding
2589	chr20	11366692	11370718	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-114674	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
3286	chr7	137661312	137667527	+	0	NA	intron (NM_001253775, intron 1 of 3)	AluY|SINE|Alu	22428	NM_194071	64764	Hs.490273	XM_005250541	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3-like 2	protein-coding
4764	chr6	31912729	31914273	+	0	NA	promoter-TSS (NM_001710).3	promoter-TSS (NM_001710).3	-220	NM_001710	629	Hs.69771	NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
2814	chr3	159385610	159388090	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	-170800	NM_001197109	29970	Hs.134665	XM_005247405	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
710	chr2	49055306	49057359	+	0	NA	Intergenic	L1PA12|LINE|L1	-73452	NM_000233	3973	Hs.468490	XM_005264309	ENSG00000138039	LHCGR	HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5	luteinizing hormone/choriogonadotropin receptor	protein-coding
1656	chr1	201559735	201576076	+	0	NA	Intergenic	Intergenic	-49545	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
856	chr20	36635907	36638623	+	0	NA	intron (NM_014657, intron 3 of 8)	intron (NM_014657, intron 3 of 8)	24568	NM_014657	9675	Hs.655481	XM_005260621	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
1664	chr1	225066344	225070876	+	0	NA	Intergenic	LTR54B|LTR|ERV1	-48746	NM_001145154	127602	Hs.133977	NM_001145154	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein, axonemal, heavy chain 14	protein-coding
112	chr1	185510322	185512288	+	0	NA	Intergenic	MIR3|SINE|MIR	-192378	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
3211	chr7	50935530	50938909	+	0	NA	Intergenic	Intergenic	-76060	NM_001001555	2887	Hs.164060	XM_005271760	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
191	chr10	77809774	77811980	+	0	NA	intron (NM_032024, intron 3 of 5)	intron (NM_032024, intron 3 of 5)	268358	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
4613	chr5	32531233	32532866	+	0	NA	Intergenic	MIR3|SINE|MIR	-53556	NM_006713	10923	Hs.229641	XM_005248232	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 homolog (S. cerevisiae)	protein-coding
3612	chr1	234657049	234660116	+	0	NA	Intergenic	Intergenic	8943	NR_038426	100506795	Hs.448989	XR_247017	ENSG00000231768	RP5-855F14.1	-	uncharacterized LOC100506795	ncRNA
588	chr17	56990659	56992898	+	0	NA	intron (NM_014906, intron 1 of 6)	L1MD3|LINE|L1	158548	NR_048561	22843	Hs.245044	XM_005257168		PPM1E	CaMKP-N|POPX1|PP2CH|caMKN	protein phosphatase, Mg2+/Mn2+ dependent, 1E	protein-coding
1684	chr1	26192578	26196373	+	0	NA	intron (NM_178422, intron 1 of 1)	intron (NM_178422, intron 1 of 1)	3269	NM_178422	164091	Hs.523652	XM_005245745	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member VII	protein-coding
756	chr2	109550889	109553486	+	0	NA	intron (NM_022336, intron 1 of 11)	L2b|LINE|L2	53641	NM_022336	10913	Hs.171971	NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
262	chr11	35562689	35564431	+	0	NA	Intergenic	Intergenic	-11712	NM_001282675	25891	Hs.55044	XM_005252849	ENSG00000149090	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
1944	chr11	20054878	20060817	+	0	NA	intron (NM_001244963, intron 13 of 39)	intron (NM_001244963, intron 13 of 39)	13745	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
4422	chr3	37143769	37145527	+	0	NA	intron (NM_006309, intron 14 of 27)	intron (NM_006309, intron 14 of 27)	71448	NM_006309	9209	Hs.740522	XM_005265538	ENSG00000093167	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
2590	chr20	14596868	14598906	+	0	NA	intron (NR_104193, intron 1 of 4)	intron (NR_104193, intron 1 of 4)	62857	NR_104193	140848	Hs.570367	NR_104193		MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1 (non-protein coding)	ncRNA
542	chr16	46897267	46899594	+	0	NA	Intergenic	AluJr|SINE|Alu	-19878	NM_133443	84706	Hs.460693	NM_001142466	ENSG00000166123	GPT2	ALT2	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding
3750	chr11	122238257	122239324	+	0	NA	Intergenic	Intergenic	-165020	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
3114	chr6	22826042	22830182	+	0	NA	Intergenic	Intergenic	258434	NM_138574	154150	Hs.629246	NM_138574	ENSG00000112273	HDGFL1	PWWP1|dJ309H15.1	hepatoma derived growth factor-like 1	protein-coding
4649	chr5	96049845	96051217	+	0	NA	intron (NM_001284212, intron 1 of 27)	intron (NM_001284212, intron 1 of 27)	11989	NM_001284212	831	Hs.436186	NM_001042440	ENSG00000153113	CAST	BS-17	calpastatin	protein-coding
2099	chr13	34592877	34595496	+	0	NA	Intergenic	Intergenic	201980	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
2476	chr2	67797790	67802402	+	0	NA	Intergenic	Intergenic	175654	NM_019002	54465	Hs.353022	XM_005264374	ENSG00000143971	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
2988	chr5	90183583	90186578	+	0	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	330463	NR_003149	84059	Hs.591777	XM_005248613	ENSG00000164199	GPR98	FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b	G protein-coupled receptor 98	protein-coding
170	chr10	20585432	20586780	+	0	NA	Intergenic	L1PA4|LINE|L1	-254793	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	ncRNA
4873	chr7	106089031	106090257	+	0	NA	Intergenic	Intergenic	-164006	NM_005746	10135	Hs.489615	XM_005250100	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
1921	chr11	34339325	34341774	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	39006	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
3217	chr7	134297526	134299893	+	0	NA	Intergenic	L3|LINE|CR1	-32822	NM_001724	669	Hs.198365	XM_005250545	ENSG00000172331	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
26	chr1	7706369	7708131	+	0	NA	intron (NM_015215, intron 7 of 22)	intron (NM_015215, intron 7 of 22)	-124079	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
4923	chr8	137457570	137458588	+	0	NA	Intergenic	Intergenic	988363	NM_006558	10656	Hs.444558	XM_005250757	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
2116	chr13	110777997	110779794	+	0	NA	Intergenic	Intergenic	180601	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
2250	chr16	56722504	56724399	+	0	NA	Intergenic	LTR33|LTR|ERVL	7069	NM_005952	4501	Hs.374950	NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
526	chr15	98502686	98503635	+	0	NA	promoter-TSS (NM_183376)	promoter-TSS (NM_183376)	-773	NM_183376	91947	Hs.6093	NM_183376	ENSG00000140450	ARRDC4	-	arrestin domain containing 4	protein-coding
1901	chr10	104058663	104063265	+	0	NA	intron (NM_004193, intron 3 of 39)	SVA_C|Other|Other	55709	NM_001199379	8729	Hs.290243	XM_005270261	ENSG00000107862	GBF1	ARF1GEF	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
3500	chr1	54422102	54423404	+	0	NA	intron (NM_052940, intron 2 of 7)	intron (NM_052940, intron 2 of 7)	10754	NM_001256409	115353	Hs.40094	XM_005270426	ENSG00000116212	LRRC42	dJ167A19.4	leucine rich repeat containing 42	protein-coding
359	chr12	68334364	68335622	+	0	NA	Intergenic	Intergenic	-48232	NR_104125	100885789	Hs.439832	XR_245999	ENSG00000255733	IFNG-AS1	GS1-410F4.2|Tmevpg1	IFNG antisense RNA 1	ncRNA
1229	chr5	160064240	160066260	+	0	NA	intron (NM_025153, intron 10 of 25)	intron (NM_025153, intron 10 of 25)	152891	NR_029701	406938		NR_029701	ENSG00000253522	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
2614	chr20	8580686	8584936	+	0	NA	intron (NM_182734, intron 3 of 32)	intron (NM_182734, intron 3 of 32)	-466890	NM_001172646	5332	Hs.472101	XM_005260722	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
2608	chr20	3526998	3530165	+	0	NA	intron (NM_139321, intron 5 of 28)	intron (NM_139321, intron 5 of 28)	76916	NM_001207047	8455	Hs.276252	XM_005260860	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
1001	chr3	197034546	197037841	+	0	NA	Intergenic	Intergenic	-10746	NM_001098424	1739	Hs.292549	XM_005269289	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
3694	chr10	102811258	102813396	+	0	NA	Intergenic	AluSx|SINE|Alu	-8672	NM_030929	81621	Hs.733496	XM_005270193		KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding
232	chr11	45300759	45304347	+	0	NA	intron (NM_001247987, intron 1 of 7)	AluSx1|SINE|Alu	5331	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
3458	chr1	201571099	201573809	+	0	NA	Intergenic	Intergenic	-44996	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
3054	chr6	36582226	36587317	+	0	NA	Intergenic	MIR3|SINE|MIR	5518	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
1182	chr5	108790293	108792697	+	0	NA	Intergenic	Intergenic	-45820	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
225	chr10	134922543	134924880	+	0	NA	intron (NM_001083909, intron 5 of 6)	MER68B|LTR|ERVL	22302	NM_001083909	84435	Hs.435183	XM_005252695	ENSG00000197177	GPR123	-	G protein-coupled receptor 123	protein-coding
1447	chr7	148868416	148870594	+	0	NA	intron (NM_170686, intron 4 of 5)	Tigger7|DNA|TcMar-Tigger	-23072	NM_003575	8427	Hs.729056	XM_005250059	ENSG00000170265	ZNF282	HUB1	zinc finger protein 282	protein-coding
142	chr1	246160307	246162471	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	419325	NM_022743	64754	Hs.567571	XM_005273227	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
207	chr10	92957969	92959421	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-21213	NM_001256549	84333	Hs.500512	NM_001256549	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
1510	chr9	18183729	18185514	+	0	NA	Intergenic	Intergenic	-289458	NM_052866	92949	Hs.741483	NM_139238	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS-like 1	protein-coding
48	chr1	64941536	64943280	+	0	NA	intron (NM_020925, intron 1 of 26)	intron (NM_020925, intron 1 of 26)	5932	NM_020925	57685	Hs.443891	NM_020925	ENSG00000158966	CACHD1	RP4-655E10.1	cache domain containing 1	protein-coding
4491	chr3	141040920	141046646	+	0	NA	intron (NM_001080412, intron 1 of 7)	intron (NM_001080412, intron 1 of 7)	728	NM_001080412	253461	Hs.518301	XM_005247255	ENSG00000177311	ZBTB38	CIBZ|ZNF921	zinc finger and BTB domain containing 38	protein-coding
3641	chr10	6778522	6780897	+	0	NA	Intergenic	Intergenic	41433	NR_108074	100652997	Hs.255086	XR_132575		LINC00706	-	long intergenic non-protein coding RNA 706	ncRNA
3585	chr1	208416235	208418371	+	0	NA	5' UTR (NM_025179, exon 1 of 32)	5' UTR (NM_025179, exon 1 of 32)	362	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
3170	chr6	125474376	125477066	+	0	NA	intron (NM_001003395, intron 1 of 6)	CpG	301	NM_001003395	7164	Hs.591347	XM_005267120	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
1988	chr12	88202432	88216788	+	0	NA	Intergenic	Intergenic	-31122	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
3923	chr15	32969268	32970271	+	0	NA	intron (NM_003020, intron 2 of 5)	MamRep605|Unknown|Unknown	35899	NM_003020	6447	Hs.156540	XM_005254595	ENSG00000166922	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V (7B2 protein)	protein-coding
4128	chr2	43394181	43402655	+	0	NA	Intergenic	Intergenic	55327	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
3730	chr11	39242862	39244616	+	0	NA	Intergenic	Intergenic	1070941	NR_047674	57689	Hs.745123	XM_005253030	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
3135	chr6	47665019	47670059	+	0	NA	intron (NM_153838, intron 1 of 9)	intron (NM_153838, intron 1 of 9)	1250	NM_153838	221393	Hs.150131	XM_005248891	ENSG00000153294	GPR115	PGR18	G protein-coupled receptor 115	protein-coding
4356	chr20	56384575	56386915	+	0	NA	Intergenic	Intergenic	-84705	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	-	microRNA 4532	ncRNA
3665	chr10	63852674	63856858	+	0	NA	3' UTR (NM_001244638, exon 7 of 7)	3' UTR (NM_001244638, exon 7 of 7)	45796	NM_001244638	84159	Hs.535297	XM_005270215	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
4343	chr20	43882205	43884378	+	0	NA	promoter-TSS (NM_003064)	promoter-TSS (NM_003064)	-86	NM_003064	6590	Hs.517070	NM_003064	ENSG00000124107	SLPI	ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4	secretory leukocyte peptidase inhibitor	protein-coding
4376	chr21	44750819	44755619	+	0	NA	Intergenic	Intergenic	-1300	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	AP001046.4|C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
4243	chr2	183224240	183225758	+	0	NA	intron (NM_001003683, intron 2 of 14)	intron (NM_001003683, intron 2 of 14)	66776	NM_001258313	5136	Hs.742174	XM_005246635	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
659	chr2	76494386	76498413	+	0	NA	Intergenic	Intergenic	-558288	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
2774	chr3	100309064	100311606	+	0	NA	Intergenic	Intergenic	-18098	NM_032787	84873	Hs.334511	XM_005247839	ENSG00000144820	GPR128	-	G protein-coupled receptor 128	protein-coding
2763	chr3	71550760	71556272	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	37724	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284	microRNA 1284	ncRNA
1141	chr5	5065561	5068422	+	0	NA	intron (NR_026994, intron 4 of 6)	intron (NR_026994, intron 4 of 6)	32519	NR_026994	340094	Hs.665092	NR_026994	ENSG00000215231	LINC01020	-	long intergenic non-protein coding RNA 1020	ncRNA
984	chr3	159749059	159751424	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	11805	NR_104132	730109	Hs.99333	XM_001132464		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
1155	chr5	52103231	52107955	+	0	NA	intron (NM_181501, intron 1 of 28)	AluSz|SINE|Alu	21457	NM_181501	3672	Hs.644352	NM_181501		ITGA1	CD49a|VLA1	integrin, alpha 1	protein-coding
3372	chr9	100965614	100970721	+	0	NA	intron (NM_001267571, intron 9 of 12)	intron (NM_001267571, intron 9 of 12)	7666	NM_001267572	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
1485	chr8	125754681	125756331	+	0	NA	Intergenic	Intergenic	-14758	NM_001282974	9788	Hs.700429	XM_005251111	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	metastasis suppressor 1	protein-coding
788	chr2	217560715	217562472	+	0	NA	Intergenic	Intergenic	-1321	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
128	chr1	208350424	208355060	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	64923	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
4797	chr6	117784620	117785768	+	0	NA	Intergenic	L1MD1|LINE|L1	-18626	NM_173674	285761	Hs.658304	XM_005266941	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
4115	chr19	43685383	43687541	+	0	NA	intron (NM_002781, intron 2 of 5)	LTR8A|LTR|ERV1	4226	NM_001130014	5673	Hs.654415	NM_001130014	ENSG00000204941	PSG5	FL-NCA-3|PSG	pregnancy specific beta-1-glycoprotein 5	protein-coding
1313	chr6	76163675	76165646	+	0	NA	intron (NM_015687, intron 1 of 5)	intron (NM_015687, intron 1 of 5)	38836	NM_015687	27145	Hs.696158	XM_005248713	ENSG00000118407	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
278	chr11	94986943	94988417	+	0	NA	Intergenic	Intergenic	-21975	NM_001271594	143686	Hs.120633	NM_001271594	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
1617	chrY	24286449	24287874	+	0	NA	Intergenic	Intergenic	-3951	NR_001527	84672	Hs.535085	XR_244582	ENSG00000131538	TTTY6	LINC00127|NCRNA00127|TTTY6A|TTY6	testis-specific transcript, Y-linked 6 (non-protein coding)	ncRNA
3521	chr1	145437897	145438869	+	0	NA	promoter-TSS (NM_006472)	promoter-TSS (NM_006472)	-55	NM_006472	10628	Hs.709057	NM_006472	ENSG00000117289	TXNIP	EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
490	chr15	31373104	31376568	+	0	NA	intron (NM_001252024, intron 1 of 27)	intron (NM_001252024, intron 1 of 27)	-17492	NR_029624	406993		NR_029624		MIR211	MIRN211|mir-211	microRNA 211	ncRNA
1843	chr10	120765021	120767993	+	0	NA	Intergenic	Intergenic	-22721	NM_199461	340719	Hs.591918	NM_001009553	ENSG00000188613	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
2626	chr20	19914426	19918361	+	0	NA	intron (NM_001242581, intron 3 of 11)	intron (NM_001242581, intron 3 of 11)	46183	NM_018993	54453	Hs.472270	XM_005260729	ENSG00000132669	RIN2	MACS|RASSF4|RP1-122P22.2	Ras and Rab interactor 2	protein-coding
1112	chr4	166135301	166138988	+	0	NA	intron (NM_001161521, intron 1 of 14)	intron (NM_001161521, intron 1 of 14)	5973	NM_001161522	11275	Hs.388668	XM_005262709	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch-like family member 2	protein-coding
1294	chr6	35062563	35065833	+	0	NA	Intergenic	MER65-int|LTR|ERV1	44989	NM_001261818	6954	Hs.435371	XM_005249337	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11, testis-specific	protein-coding
461	chr14	59564492	59565775	+	0	NA	Intergenic	L2|LINE|L2	-90248	NM_001270520	23002	Hs.19156	XM_005267430	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
2712	chr3	106446203	106449354	+	0	NA	Intergenic	Intergenic	511707	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	RP11-280F2.2	long intergenic non-protein coding RNA 882	ncRNA
1562	chrX	39033409	39035170	+	0	NA	Intergenic	Intergenic	152327	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	RP11-265P11.2	-	uncharacterized LOC286442	ncRNA
1426	chr7	108053963	108057528	+	0	NA	intron (NM_001193582, intron 1 of 30)	LTR79|LTR|ERVL	41096	NM_001193584	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
3451	chr1	120601304	120602660	+	0	NA	intron (NM_024408, intron 1 of 33)	intron (NM_024408, intron 1 of 33)	10335	NM_001200001	4853	Hs.487360	XM_005270901	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
4640	chr5	94619349	94621156	+	0	NA	promoter-TSS (NM_024717)	promoter-TSS (NM_024717)	27	NM_024717	79772	Hs.655087	XM_005272082	ENSG00000175471	MCTP1	-	multiple C2 domains, transmembrane 1	protein-coding
1358	chr6	136818632	136821428	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	27321	NM_001198611	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
782	chr2	210247387	210248917	+	0	NA	Intergenic	Intergenic	-40619	NM_001039538	4133	Hs.368281	XM_005246554	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
3647	chr10	18970350	18972139	+	0	NA	Intergenic	Intergenic	22931	NM_178815	221079	Hs.594569	XM_005252400	ENSG00000165997	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
2281	chr17	79281295	79285453	+	0	NA	promoter-TSS (NR_038080)	promoter-TSS (NR_038080)	-326	NR_038080	284185	Hs.631762	NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
1557	chrX	11487763	11489342	+	0	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	-42647	NM_001287242	395	Hs.435291	XM_005274504	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
1486	chr8	127128406	127130308	+	0	NA	Intergenic	Intergenic	-165916	NR_038446	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	RP11-622O11.2	long intergenic non-protein coding RNA 861	ncRNA
425	chr13	48073104	48074171	+	0	NA	Intergenic	Intergenic	501825	NM_003850	8803	Hs.743361	XM_005266579	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
4987	chr9	124043600	124045606	+	0	NA	non-coding (NR_103560, exon 1 of 1)	non-coding (NR_103560, exon 1 of 1)	3205	NR_103560	57000	Hs.522373	NR_103560	ENSG00000235865	GSN-AS1	C9orf31|MOST2	GSN antisense RNA 1	ncRNA
2056	chr12	58281479	58286519	+	0	NA	Intergenic	Intergenic	-43252	NM_005730	10106	Hs.524530	XM_005268556	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
3607	chr1	231711713	231714442	+	0	NA	intron (NR_028398, intron 3 of 10)	L2a|LINE|L2	34759	NR_034037	100287814	Hs.25555	NR_034037	ENSG00000229228	LINC00582	-	long intergenic non-protein coding RNA 582	ncRNA
2876	chr4	77221686	77223952	+	0	NA	intron (NM_001242939, intron 6 of 6)	intron (NM_001242939, intron 6 of 6)	-4360	NM_003943	8987	Hs.109590	NM_003943	ENSG00000118804	STBD1	GENEX3414	starch binding domain 1	protein-coding
3648	chr10	19001572	19002661	+	0	NA	Intergenic	Intergenic	53803	NM_178815	221079	Hs.594569	XM_005252400	ENSG00000165997	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
3428	chrX	100227976	100229694	+	0	NA	intron (NR_103708, intron 2 of 8)	intron (NR_103708, intron 2 of 8)	4138	NR_103708	392509	Hs.147237	NM_001162491	ENSG00000174225	ARL13A	ARL13|dJ341D10.2	ADP-ribosylation factor-like 13A	protein-coding
781	chr2	208195113	208196366	+	0	NA	Intergenic	Intergenic	-76699	NR_110283	101927865	Hs.622883	XR_241391	ENSG00000234902	AC007879.2	AC007879.5	uncharacterized LOC101927865	ncRNA
3015	chr5	133352192	133356177	+	0	NA	Intergenic	Intergenic	-13360	NM_003374	7416	Hs.519320	XM_005272073	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage-dependent anion channel 1	protein-coding
1950	chr11	35295640	35298893	+	0	NA	intron (NM_004171, intron 9 of 10)	intron (NM_004171, intron 9 of 10)	136849	NM_001202556	960	Hs.502328	XM_005253231	ENSG00000026508	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
2782	chr3	108873374	108876398	+	0	NA	Intergenic	Intergenic	19325	NR_033977	401081	Hs.280892	NR_033977	ENSG00000241224	FLJ22763	RP11-59E19.1	uncharacterized LOC401081	ncRNA
2037	chr12	19908951	19913311	+	0	NA	Intergenic	L1PREC2|LINE|L1	-256488	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
532	chr16	30849726	30852167	+	0	NA	intron (NM_001286526, intron 5 of 5)	MLT1E3|LTR|ERVL-MaLR	35698	NR_039744	100616231		NR_039744		MIR4519	-	microRNA 4519	ncRNA
1193	chr5	123251545	123253613	+	0	NA	Intergenic	Intergenic	371468	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
3963	chr15	89609902	89612438	+	0	NA	Intergenic	Intergenic	-20211	NM_007011	11057	Hs.122337	XM_005254832	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
2455	chr2	37915262	37917967	+	0	NA	Intergenic	Intergenic	-16936	NM_001270436	10602	Hs.369574	NM_001270436	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
55	chr1	83030398	83031680	+	0	NA	Intergenic	Intergenic	764957	NM_012302	23266	Hs.649282	XM_005270666	ENSG00000117114	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
3592	chr1	214160303	214162760	+	0	NA	promoter-TSS (NM_002763)	promoter-TSS (NM_002763)	253	NM_001270616	5629	Hs.744931	XM_005273194	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding
1890	chr10	91100614	91105307	+	0	NA	Intergenic	MER39|LTR|ERV1	10721	NM_001031683	3437	Hs.744072	NM_001031683	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G	interferon-induced protein with tetratricopeptide repeats 3	protein-coding
1681	chr1	21633414	21636567	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	15207	NR_038404	100506801	Hs.663049	NR_038404	ENSG00000231105	RP5-1071N3.1	-	uncharacterized LOC100506801	ncRNA
872	chr21	27760445	27763541	+	0	NA	Intergenic	Intergenic	183588	NM_052954	116159	Hs.37445	XM_005260918	ENSG00000166265	CYYR1	C21orf95	cysteine/tyrosine-rich 1	protein-coding
1146	chr5	16538583	16540125	+	0	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	-30247	NM_019000	54463	Hs.481704	XM_005248312	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
395	chr12	104252215	104254477	+	0	NA	intron (NR_027249, intron 13 of 15)	MIR|SINE|MIR	-18371	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
89	chr1	159929955	159932342	+	0	NA	non-coding (NR_038849, exon 1 of 3)	non-coding (NR_038849, exon 1 of 3)	134	NR_038849	100505633	Hs.445045	NR_038849	ENSG00000224259	LINC01133	RP11-48O20.4	long intergenic non-protein coding RNA 1133	ncRNA
988	chr3	182961687	182963728	+	0	NA	intron (NM_015078, intron 15 of 29)	intron (NM_015078, intron 15 of 29)	-8325	NM_032047	84002	Hs.718506	XM_005247823	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
4342	chr20	43363142	43364181	+	0	NA	Intergenic	Intergenic	-10827	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	potassium channel, subfamily K, member 15	protein-coding
3584	chr1	208412784	208413827	+	0	NA	intron (NM_025179, intron 1 of 31)	intron (NM_025179, intron 1 of 31)	4360	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
2295	chr17	28035203	28038929	+	0	NA	intron (NM_001282129, intron 3 of 15)	intron (NM_001282129, intron 3 of 15)	51384	NM_001282131	85464	Hs.654754	XM_005258058	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
1550	chrX	64683080	64684247	+	0	NA	Intergenic	L1M3d|LINE|L1	-24952	NM_001010888	340554	Hs.21249	XM_005262260	ENSG00000102053	ZC3H12B	CXorf32|MCPIP2	zinc finger CCCH-type containing 12B	protein-coding
1454	chr8	135903484	135907083	+	0	NA	Intergenic	L1MB7|LINE|L1	-88095	NR_029599	407033		NR_029599	ENSG00000199153	MIR30D	MIRN30D	microRNA 30d	ncRNA
2533	chr2	161130478	161133822	+	0	NA	exon (NM_002897, exon 13 of 14)	exon (NM_002897, exon 13 of 14)	-3744	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
3960	chr15	86328340	86330362	+	0	NA	intron (NM_022480, intron 1 of 2)	intron (NM_022480, intron 1 of 2)	8838	NM_022480	64410	Hs.498371	NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch-like family member 25	protein-coding
4434	chr3	54925204	54925879	+	0	NA	intron (NM_018398, intron 25 of 37)	intron (NM_018398, intron 25 of 37)	9741	NR_046666	100874237	Hs.570583	NR_046666	ENSG00000243715	CACNA2D3-AS1	RP11-674P14.1	CACNA2D3 antisense RNA 1	ncRNA
1584	chrX	76207249	76208616	+	0	NA	Intergenic	L1PA8A|LINE|L1	-68147	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
1675	chr1	7392680	7398628	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-435675	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
649	chr19	43607325	43610851	+	0	NA	Intergenic	LTR9|LTR|ERV1	-22195	NM_031246	5670	Hs.709200	NM_031246	ENSG00000242221	PSG2	CEA|PSBG2|PSG1	pregnancy specific beta-1-glycoprotein 2	protein-coding
3903	chr14	79744950	79746383	+	0	NA	promoter-TSS (NM_001105250)	promoter-TSS (NM_001105250)	-16	NM_138970	9369	Hs.368307	XM_005268218		NRXN3	C14orf60	neurexin 3	protein-coding
2150	chr14	70113469	70120049	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	38449	NM_014734	9766	Hs.440025	XM_005268241	ENSG00000100647	KIAA0247	-	KIAA0247	protein-coding
1318	chr6	80852164	80854033	+	0	NA	intron (NM_183050, intron 3 of 9)	intron (NM_183050, intron 3 of 9)	36754	NM_183050	594	Hs.654441	XM_005248756	ENSG00000083123	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
642	chr19	33414203	33416910	+	0	NA	intron (NM_032816, intron 11 of 18)	intron (NM_032816, intron 11 of 18)	47313	NM_032816	84902	Hs.599703	XM_005259343	ENSG00000121289	CEP89	CCDC123|CEP123	centrosomal protein 89kDa	protein-coding
1764	chr1	201152204	201156143	+	0	NA	Intergenic	Intergenic	-5780	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
3348	chr9	34070252	34075538	+	0	NA	Intergenic	Intergenic	-23948	NM_018449	55833	Hs.493739	XM_005251504	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
1908	chr10	115311536	115314012	+	0	NA	promoter-TSS (NM_004132)	promoter-TSS (NM_004132)	-4	NM_004132	3026	Hs.422542	NM_001177660	ENSG00000148702	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
4291	chr20	23344941	23348787	+	0	NA	intron (NM_022482, intron 1 of 4)	intron (NM_022482, intron 1 of 4)	1843	NM_022482	64412	Hs.709462	XM_005260797	ENSG00000125812	GZF1	ZBTB23|ZNF336	GDNF-inducible zinc finger protein 1	protein-coding
2792	chr3	112404050	112410098	+	0	NA	Intergenic	Intergenic	-47084	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
1718	chr1	117688652	117691778	+	0	NA	intron (NM_001253849, intron 5 of 5)	intron (NM_001253849, intron 5 of 5)	-25804	NM_025188	80263	Hs.301526	XR_246297	ENSG00000134253	TRIM45	RNF99	tripartite motif containing 45	protein-coding
1098	chr4	143469927	143472784	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	296249	NM_003866	8821	Hs.531403	XM_005263322	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
3003	chr5	123144339	123147329	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	264723	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
4849	chr7	30329546	30330535	+	0	NA	promoter-TSS (NR_037513)	promoter-TSS (NR_037513)	-534	NR_037513	100500883		NR_037513		MIR550B1	-	microRNA 550b-1	ncRNA
5018	chrX	117670499	117671415	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	41085	NM_144658	139818	Hs.368203	XM_005262368	ENSG00000147251	DOCK11	ACG|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
2665	chr21	36143142	36144997	+	0	NA	intron (NR_038885, intron 1 of 2)	Tigger7|DNA|TcMar-Tigger	25947	NR_038885	100506385	Hs.120179	NR_038885	ENSG00000234380	AP000330.8	-	uncharacterized LOC100506385	ncRNA
4609	chr5	16811889	16814471	+	0	NA	intron (NM_012334, intron 3 of 40)	intron (NM_012334, intron 3 of 40)	123205	NM_012334	4651	Hs.481720	XM_005248306	ENSG00000145555	MYO10	-	myosin X	protein-coding
184	chr10	64873281	64875000	+	0	NA	Intergenic	Intergenic	-18867	NM_001282405	29982	Hs.449628	XM_005269721	ENSG00000148572	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
776	chr2	197375077	197377142	+	0	NA	intron (NM_020760, intron 1 of 28)	intron (NM_020760, intron 1 of 28)	81226	NM_020760	57520	Hs.654742	XM_005246704	ENSG00000138411	HECW2	NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
3738	chr11	73979101	73981223	+	0	NA	intron (NR_110031, intron 10 of 11)	intron (NR_110031, intron 10 of 11)	42559	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
1570	chrX	55650253	55651621	+	0	NA	exon (NM_198451, exon 1 of 1)	exon (NM_198451, exon 1 of 1)	1104	NM_198451	139628	Hs.364260	NM_198451	ENSG00000189299	FOXR2	FOXN6	forkhead box R2	protein-coding
2673	chr21	43638766	43641172	+	0	NA	promoter-TSS (NM_207174)	promoter-TSS (NM_207174)	-39	NM_207174	9619	Hs.418279	XM_005261209	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding
1269	chr6	11341543	11346148	+	0	NA	intron (NR_073131, intron 1 of 9)	L2a|LINE|L2	38736	NM_001142393	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
181	chr10	61754851	61756247	+	0	NA	Intergenic	Intergenic	-34878	NR_024340	283025	Hs.522955	XR_246084	ENSG00000235931	C10orf40	-	chromosome 10 open reading frame 40	ncRNA
412	chr13	24605687	24608373	+	0	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	53265	NM_001286792	221178	Hs.595391	XM_005266289	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
1671	chr1	872020	882268	+	0	NA	intron (NM_152486, intron 8 of 13)	CpG-18	16023	NM_152486	148398	Hs.335293	XM_005244723	ENSG00000187634	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
4242	chr2	180137105	180137761	+	0	NA	Intergenic	Intergenic	-8083	NM_178123	91404	Hs.30977	XM_005246944	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domains 1	protein-coding
830	chr20	9251146	9252893	+	0	NA	intron (NM_182797, intron 1 of 35)	MIR|SINE|MIR	-36428	NM_000933	5332	Hs.472101	XM_005260722	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
4933	chr9	117669401	117671431	+	0	NA	intron (NM_001244, intron 2 of 3)	L2c|LINE|L2	22459	NM_001244	944	Hs.654445	NM_001244		TNFSF8	CD153|CD30L|CD30LG	tumor necrosis factor (ligand) superfamily, member 8	protein-coding
3721	chr11	20015879	20017721	+	0	NA	intron (NM_001244963, intron 12 of 39)	intron (NM_001244963, intron 12 of 39)	-27302	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
2893	chr4	123717859	123720525	+	0	NA	Intergenic	LTR81A|LTR|Gypsy	-28671	NM_002006	2247	Hs.284244	XM_005262836	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2 (basic)	protein-coding
2062	chr12	69796410	69802124	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	45735	NM_006530	8089	Hs.4029	XM_005269163	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
3935	chr15	55693384	55701986	+	0	NA	intron (NR_037923, intron 8 of 15)	AluSx|SINE|Alu	2889	NM_004748	9236	Hs.285051	XM_005254782	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
1101	chr4	149296290	149298115	+	0	NA	intron (NM_001166104, intron 2 of 7)	intron (NM_001166104, intron 2 of 7)	66470	NM_000901	4306	Hs.163924	XM_005263014	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
326	chr12	74726958	74727860	+	0	NA	Intergenic	Intergenic	-40998	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
1165	chr5	62339070	62340494	+	0	NA	Intergenic	Intergenic	465220	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
2886	chr4	90042669	90046002	+	0	NA	Intergenic	Intergenic	10367	NM_145715	166815	Hs.58924	XM_005262789	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
2543	chr2	191272173	191274848	+	0	NA	intron (NM_017694, intron 1 of 7)	CpG	429	NM_017694	54842	Hs.744117	XM_005246654	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
3940	chr15	63049697	63051327	+	0	NA	intron (NM_015059, intron 34 of 55)	intron (NM_015059, intron 34 of 55)	-65644	NR_029709	406965		NR_029709		MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190	microRNA 190a	ncRNA
335	chr12	15773258	15774910	+	0	NA	3' UTR (NM_004447, exon 21 of 21)	3' UTR (NM_004447, exon 21 of 21)	74806	NM_030668	5800	Hs.160871	NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
3531	chr1	152081968	152085016	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	4438	NM_007113	7062	Hs.432416	XM_005245468	ENSG00000159450	TCHH	THH|THL|TRHY	trichohyalin	protein-coding
4681	chr5	150003753	150005142	+	0	NA	intron (NM_001166208, intron 2 of 2)	intron (NM_001166208, intron 2 of 2)	7241	NM_001166209	11346	Hs.435228	XM_005268368	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
4287	chr20	6141796	6148210	+	0	NA	Intergenic	Intergenic	-40812	NM_017671	55612	Hs.472054	NM_017671	ENSG00000101311	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	fermitin family member 1	protein-coding
2791	chr3	112400265	112402633	+	0	NA	Intergenic	Intergenic	-41459	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
4481	chr3	120135665	120137104	+	0	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	-21808	NR_029584	406975		NR_029584		MIR198	MIRN198|miR-198	microRNA 198	ncRNA
1867	chr10	37822934	37827927	+	0	NA	Intergenic	MER107|DNA|DNA	66429	NM_001190489	100288485	Hs.727092	NM_001190489	ENSG00000256892	MTRNR2L7	HN7	MT-RNR2-like 7	protein-coding
4742	chr6	13397325	13397973	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	10720	NM_001242630	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
3969	chr15	91998521	92000541	+	0	NA	Intergenic	L1PB1|LINE|L1	-7038	NR_110106	101926928	Hs.638788	XR_243232	ENSG00000258551	RP11-661P17.1	-	uncharacterized LOC101926928	ncRNA
4664	chr5	131007557	131008840	+	0	NA	exon (NM_133372, exon 14 of 18)	exon (NM_133372, exon 14 of 18)	-37269	NM_001164390	51735	Hs.483329	XM_005272013	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
2505	chr2	103601653	103603726	+	0	NA	Intergenic	MIRc|SINE|MIR	224199	NM_144632	130827	Hs.436203	XM_005263874	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
4856	chr7	38902839	38903954	+	0	NA	intron (NM_080631, intron 3 of 27)	intron (NM_080631, intron 3 of 27)	45404	NM_080631	27072	Hs.592184	NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|hVps41p	vacuolar protein sorting 41 homolog (S. cerevisiae)	protein-coding
3533	chr1	154306331	154307952	+	0	NA	intron (NM_001005855, intron 11 of 11)	intron (NM_001005855, intron 11 of 11)	6865	NM_020452	57198	Hs.435700	XM_005245355	ENSG00000143515	ATP8B2	ATPID	ATPase, aminophospholipid transporter, class I, type 8B, member 2	protein-coding
2936	chr5	82846714	82862673	+	0	NA	intron (NM_004385, intron 12 of 14)	intron (NM_004385, intron 12 of 14)	87200	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
440	chr14	31882667	31884822	+	0	NA	intron (NM_015473, intron 1 of 35)	intron (NM_015473, intron 1 of 35)	6044	NM_015473	25938	Hs.744979	XM_005267504	ENSG00000129493	HEATR5A	C14orf125	HEAT repeat containing 5A	protein-coding
1289	chr6	22140521	22143539	+	0	NA	intron (NR_034143, intron 2 of 2)	intron (NR_034143, intron 2 of 2)	5392	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
2525	chr2	150988988	150992910	+	0	NA	Intergenic	Intergenic	353260	NM_005168	390	Hs.713765	NM_001254738	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
841	chr20	17004344	17006049	+	0	NA	Intergenic	Intergenic	-201556	NM_001201528	5126	Hs.315186	XM_005260719	ENSG00000125851	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
1898	chr10	95766141	95768022	+	0	NA	intron (NM_016341, intron 1 of 32)	intron (NM_016341, intron 1 of 32)	13335	NM_016341	51196	Hs.655033	XM_005269880	ENSG00000138193	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
4668	chr5	133353473	133355459	+	0	NA	Intergenic	MER77B|LTR|ERVL	-13642	NM_003374	7416	Hs.519320	XM_005272073	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage-dependent anion channel 1	protein-coding
1044	chr4	38450702	38452873	+	0	NA	Intergenic	Intergenic	-214003	NM_016531	51274	Hs.298658	NM_016531	ENSG00000109787	KLF3	BKLF	Kruppel-like factor 3 (basic)	protein-coding
3513	chr1	112936353	112937829	+	0	NA	Intergenic	L2b|LINE|L2	-1709	NM_018704	55917	Hs.744100	XM_005271034	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
1751	chr1	183666007	183671241	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	-46176	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
4029	chr17	17438348	17443390	+	0	NA	intron (NM_001267551, intron 2 of 6)	intron (NM_001267551, intron 2 of 6)	39910	NM_148173	10400	Hs.714193	XM_005256409	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
91	chr1	163865823	163869178	+	0	NA	Intergenic	Intergenic	-474519	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
2137	chr14	51025951	51028707	+	0	NA	intron (NM_181598, intron 1 of 12)	CpG	586	NM_015915	51062	Hs.584905	NM_001127713	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
4116	chr19	43704662	43706658	+	0	NA	intron (NM_002780, intron 2 of 5)	LTR8A|LTR|ERV1	4266	NM_001276495	5672	Hs.711363	XM_005259069	ENSG00000243137	PSG4	PSG9	pregnancy specific beta-1-glycoprotein 4	protein-coding
467	chr14	66298556	66300492	+	0	NA	Intergenic	Intergenic	420076	NR_038170	2530	Hs.654961	NM_004480	ENSG00000033170	FUT8	-	fucosyltransferase 8 (alpha (1,6) fucosyltransferase)	protein-coding
2121	chr14	68992451	68995328	+	0	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	266742	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
474	chr14	70776731	70778765	+	0	NA	Intergenic	L1PA5|LINE|L1	48700	NM_001204090	51241	Hs.709581	NM_001204090	ENSG00000133983	COX16	C14orf112	COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	protein-coding
3563	chr1	197963204	197965928	+	0	NA	Intergenic	Intergenic	78049	NM_020204	56956	Hs.706475	XM_005245349	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
563	chr16	79646322	79647908	+	0	NA	Intergenic	Intergenic	-12493	NM_001031804	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
3248	chr7	66099145	66102524	+	0	NA	intron (NM_153033, intron 2 of 3)	intron (NM_153033, intron 2 of 3)	6966	NM_153033	154881	Hs.546627	XM_005250164	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
2919	chr4	173932596	173936671	+	0	NA	intron (NM_001034845, intron 11 of 12)	intron (NM_001034845, intron 11 of 12)	-155271	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
4058	chr17	70574439	70577649	+	0	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	12899	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
2953	chr5	156810715	156815693	+	0	NA	intron (NM_001037332, intron 28 of 30)	L1M5|LINE|L1	-40475	NM_001001343	408263	Hs.437066	NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
3489	chr1	41441485	41442901	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2814	NM_001905	1503	Hs.473087	XM_005270535	ENSG00000171793	CTPS1	CTPS	CTP synthase 1	protein-coding
68	chr1	118388749	118390770	+	0	NA	Intergenic	Intergenic	82543	NM_017686	54834	Hs.667170	XM_005270959	ENSG00000196505	GDAP2	MACROD3	ganglioside induced differentiation associated protein 2	protein-coding
4106	chr19	34722368	34725609	+	0	NA	Intergenic	Intergenic	-21468	NM_014686	9710	Hs.330073	XM_005259444	ENSG00000166398	KIAA0355	-	KIAA0355	protein-coding
2514	chr2	122039339	122043497	+	0	NA	intron (NM_014553, intron 1 of 14)	intron (NM_014553, intron 1 of 14)	1360	NM_014553	29842	Hs.156471	XM_005263651	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
4176	chr2	55326451	55327896	+	0	NA	Intergenic	Intergenic	-49439	NM_153828	57142	Hs.637850	XM_005264434	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
3628	chr10	63387614	63390338	+	0	NA	Intergenic	Intergenic	-33743	NM_173554	219621	Hs.673160	XM_005269598	ENSG00000183346	C10orf107	bA63A2.1	chromosome 10 open reading frame 107	protein-coding
3807	chr12	68798800	68800447	+	0	NA	Intergenic	Intergenic	-73462	NM_020128	56890	Hs.655702	XM_005269026	ENSG00000111554	MDM1	-	Mdm1 nuclear protein homolog (mouse)	protein-coding
3995	chr16	57678857	57682412	+	0	NA	intron (NM_201524, intron 2 of 14)	MIRb|SINE|MIR	7427	NM_001145774	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
222	chr10	129742775	129744731	+	0	NA	intron (NM_006504, intron 1 of 20)	intron (NM_006504, intron 1 of 20)	38428	NM_006504	5791	Hs.127022	XM_005252688	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
2911	chr4	154313780	154315524	+	0	NA	intron (NR_045605, intron 6 of 9)	AluJb|SINE|Alu	48851	NM_001253861	84057	Hs.294088	XM_005263274	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1 homolog (S. cerevisiae)	protein-coding
2418	chr2	205764259	205766925	+	0	NA	intron (NM_205863, intron 2 of 21)	L1M1|LINE|L1	355076	NM_057177	117583	Hs.657382	XM_005246273	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
3132	chr6	46892796	46895024	+	0	NA	intron (NM_015234, intron 1 of 20)	intron (NM_015234, intron 1 of 20)	-4196	NM_001098518	221395	Hs.362806	XM_005248892	ENSG00000069122	GPR116	KPG_001	G protein-coupled receptor 116	protein-coding
305	chr11	122278787	122285861	+	0	NA	Intergenic	LTR49|LTR|ERV1	-208554	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
928	chr3	25276002	25277413	+	0	NA	Intergenic	L1MEf|LINE|L1	-193047	NM_016152	5915	Hs.733004	XM_005265361	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RRB2	retinoic acid receptor, beta	protein-coding
1644	chr1	169537479	169544847	+	0	NA	intron (NM_000130, intron 3 of 24)	MIRb|SINE|MIR	14606	NM_000130	2153	Hs.30054	NM_000130		F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V (proaccelerin, labile factor)	protein-coding
1526	chr9	72512448	72514992	+	0	NA	intron (NM_001010940, intron 5 of 5)	intron (NM_001010940, intron 5 of 5)	77989	NM_001010940	138255	Hs.444459	XM_005251705	ENSG00000204711	C9orf135	-	chromosome 9 open reading frame 135	protein-coding
4560	chr4	100643968	100645664	+	0	NA	Intergenic	Intergenic	-93165	NM_014395	27071	Hs.708484	XM_005262919	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides	protein-coding
4276	chr2	240866200	240867673	+	0	NA	Intergenic	Tigger3d|DNA|TcMar-Tigger	15575	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	-	microRNA 4786	ncRNA
3245	chr7	50800326	50802761	+	0	NA	intron (NM_001001555, intron 2 of 16)	MLT2C1|LTR|ERVL	-1493	NM_005311	2887	Hs.164060	XM_005271760	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
217	chr10	115910399	115912332	+	0	NA	intron (NM_018017, intron 3 of 15)	MER44C|DNA|TcMar-Tigger	22573	NR_031747	100302224		NR_031747	ENSG00000238742	MIR2110	hsa-mir-2110	microRNA 2110	ncRNA
4815	chr6	150463719	150464856	+	0	NA	promoter-TSS (NM_030949)	promoter-TSS (NM_030949)	99	NM_030949	81706	Hs.486798	XM_005267152	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1, regulatory (inhibitor) subunit 14C	protein-coding
4076	chr18	33092421	33094757	+	0	NA	Intergenic	Intergenic	-15634	NM_194281	125476	Hs.464903	XM_005258195	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
158	chr10	4004992	4006378	+	0	NA	Intergenic	Intergenic	-27667	NR_106726	102464829		NR_106726		MIR6078	hsa-mir-6078	microRNA mir-6078	ncRNA
281	chr11	96057536	96059350	+	0	NA	intron (NM_032427, intron 1 of 4)	MIRc|SINE|MIR	-16159	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	-	microRNA 1260b	ncRNA
3832	chr12	106482427	106486247	+	0	NA	intron (NM_014840, intron 2 of 6)	MIR|SINE|MIR	49474	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
3412	chrX	124337366	124340311	+	0	NA	Intergenic	Intergenic	-115131	NM_001195272	100129520	Hs.728728	XM_005262352		LOC100129520	-	testis expressed sequence 13-like	protein-coding
4928	chr9	38436729	38438514	+	0	NA	Intergenic	Intergenic	-13177	NM_001007563	347252	Hs.349705	NM_001007563		IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
3658	chr10	30099845	30102750	+	0	NA	Intergenic	Intergenic	-76567	NM_003174	6840	Hs.499209	XM_005252564	ENSG00000197321	SVIL	-	supervillin	protein-coding
1418	chr7	96971195	96972087	+	0	NA	Intergenic	Intergenic	225736	NM_020186	57001	Hs.592269	NM_020186	ENSG00000196636	ACN9	-	ACN9 homolog (S. cerevisiae)	protein-coding
36	chr1	23976718	23978647	+	0	NA	Intergenic	Intergenic	23858	NR_027042	259283	Hs.523369	NR_027042	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
1368	chr6	147282757	147284732	+	0	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-158784	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
748	chr2	88799466	88800768	+	0	NA	Intergenic	L2a|LINE|L2	-24052	NM_152670	200523	Hs.132104	XM_005264188	ENSG00000172073	TEX37	C2orf51|TSC21	testis expressed 37	protein-coding
472	chr14	70321245	70323219	+	0	NA	Intergenic	Intergenic	-23882	NM_001034852	64093	Hs.497349	XM_005267995	ENSG00000198732	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding
1655	chr1	201467369	201477578	+	0	NA	intron (NM_001193570, intron 1 of 5)	Charlie19a|DNA|hAT-Charlie	3494	NM_001193571	1465	Hs.108080	XM_005244908	ENSG00000159176	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141	cysteine and glycine-rich protein 1	protein-coding
1943	chr11	20044070	20046654	+	0	NA	intron (NM_001111019, intron 2 of 27)	intron (NM_001111019, intron 2 of 27)	1260	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
711	chr2	53160507	53162806	+	0	NA	Intergenic	Intergenic	-833273	NM_001008708	494143	Hs.585944	XM_005264336	ENSG00000143942	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
132	chr1	219690956	219692974	+	0	NA	Intergenic	Intergenic	344773	NM_138794	127018	Hs.657617	XM_005273046	ENSG00000143353	LYPLAL1	-	lysophospholipase-like 1	protein-coding
1791	chr1	220700501	220703462	+	0	NA	5' UTR (NM_001286129, exon 1 of 3)	5' UTR (NM_001286129, exon 1 of 3)	456	NM_001286128	4139	Hs.497806	XM_005273133	ENSG00000116141	MARK1	MARK|Par-1c|Par1c	MAP/microtubule affinity-regulating kinase 1	protein-coding
3779	chr12	15865312	15866692	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	76508	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
3747	chr11	118757900	118759317	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	4133	NM_001716	643	Hs.113916	XM_005271645		CXCR5	BLR1|CD185|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding
2180	chr15	32796710	32799099	+	0	NA	Intergenic	Intergenic	28038	NR_036650	100288615	Hs.668734	NR_036650		WHAMMP1	WHDC1P1	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 1	pseudo
2769	chr3	94335191	94337020	+	0	NA	Intergenic	Intergenic	-321002	NR_015400	255025	Hs.130994	XR_241480	ENSG00000239589	LINC00879	RP11-118N24.3	long intergenic non-protein coding RNA 879	ncRNA
1428	chr7	116474525	116476125	+	0	NA	Intergenic	Intergenic	-27238	NM_006136	830	Hs.446123	XR_242266		CAPZA2	CAPPA2|CAPZ	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding
4081	chr18	46116232	46117757	+	0	NA	intron (NM_001142397, intron 2 of 12)	MIR3|SINE|MIR	51567	NM_001142397	9811	Hs.145230	XM_005258392	ENSG00000134030	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
1018	chr4	122715515	122717715	+	0	NA	Intergenic	AluSz|SINE|Alu	-5857	NM_005033	5393	Hs.91728	XM_005263068	ENSG00000123737	EXOSC9	PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
4992	chr9	137532625	137537882	+	0	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	1602	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	collagen, type V, alpha 1	protein-coding
1125	chr5	111555914	111559080	+	0	NA	intron (NM_022140, intron 12 of 22)	intron (NM_022140, intron 12 of 22)	60315	NR_002922	654322	Hs.689709	NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
2279	chr17	76856893	76860799	+	0	NA	intron (NM_003255, intron 3 of 4)	L1PA16|LINE|L1	-21877	NM_025090	57602	Hs.464243	XM_005257542	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
741	chr2	84712562	84715071	+	0	NA	Intergenic	Intergenic	-27230	NM_003849	8802	Hs.270428	NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase, alpha subunit	protein-coding
998	chr3	192639575	192642224	+	0	NA	Intergenic	AluSg|SINE|Alu	-4949	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
2806	chr3	138212442	138214008	+	0	NA	TTS (NM_001288967)	TTS (NM_001288967)	59810	NM_031913	83850	Hs.477711	XR_241510	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin-like protein 3	protein-coding
4831	chr7	44677034	44680515	+	0	NA	intron (NM_001003941, intron 2 of 8)	intron (NM_001003941, intron 2 of 8)	32653	NM_002541	4967	Hs.488181	XM_005249759	ENSG00000105953	OGDH	AKGDH|E1k|OGDC	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding
4621	chr5	52775159	52776971	+	0	NA	promoter-TSS (NM_006350)	promoter-TSS (NM_006350)	-199	NM_006350	10468	Hs.9914	XM_005248400	ENSG00000134363	FST	FS	follistatin	protein-coding
3032	chr5	155573255	155577416	+	0	NA	Intergenic	Intergenic	-178432	NM_000337	6444	Hs.644733	XM_005265965	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)	protein-coding
1789	chr1	219726585	219731183	+	0	NA	Intergenic	Intergenic	-317735	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
3880	chr14	100872375	100876310	+	0	NA	intron (NM_001161476, intron 2 of 6)	intron (NM_001161476, intron 2 of 6)	31509	NM_024515	79446	Hs.497600	XM_005268056	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
4757	chr6	28509938	28510930	+	0	NA	Intergenic	Intergenic	16645	NM_003996	2880	Hs.248129	NM_001509	ENSG00000224586	GPX5	HEL-S-75p	glutathione peroxidase 5 (epididymal androgen-related protein)	protein-coding
3947	chr15	69885970	69888341	+	0	NA	Intergenic	Intergenic	33096	NR_026979	145837	Hs.737088	XR_243079		RP11-279F6.1	-	uncharacterized LOC145837	ncRNA
3192	chr6	157273408	157276101	+	0	NA	intron (NM_017519, intron 4 of 18)	intron (NM_017519, intron 4 of 18)	-173889	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	-	microRNA 4466	ncRNA
2076	chr12	106497585	106509844	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	30097	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
4294	chr20	36535193	36537279	+	0	NA	intron (NM_080607, intron 1 of 3)	intron (NM_080607, intron 1 of 3)	4737	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
1545	chr9	123373742	123375771	+	0	NA	exon (NM_001080497, exon 4 of 6)	exon (NM_001080497, exon 4 of 6)	-32308	NR_073557	55755	Hs.269560	NM_001011649	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
1838	chr10	93346978	93366608	+	0	NA	intron (NR_024467, intron 1 of 4)	intron (NR_024467, intron 1 of 4)	14424	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
1773	chr1	205112878	205117315	+	0	NA	3' UTR (NM_199462, exon 12 of 12)	3' UTR (NM_199462, exon 12 of 12)	-23946	NM_001193272	5929	Hs.519230	XM_005245398	ENSG00000117222	RBBP5	RBQ3|SWD1	retinoblastoma binding protein 5	protein-coding
1058	chr4	41537307	41539034	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-76619	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4989	chr9	130722324	130723805	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-10071	NM_203305	399665	Hs.535972	XM_005251984	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102, member A	protein-coding
3883	chr14	32978258	32979608	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	180454	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
3704	chr10	116277873	116280938	+	0	NA	intron (NM_001003407, intron 6 of 21)	intron (NM_001003407, intron 6 of 21)	7280	NM_006720	3983	Hs.593868	XM_005269818	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
3166	chr6	117709807	117711862	+	0	NA	exon (NM_002944, exon 12 of 43)	exon (NM_002944, exon 12 of 43)	36184	NM_002944	6098	Hs.1041	NM_002944	ENSG00000047936	ROS1	MCF3|ROS|c-ros-1	c-ros oncogene 1 , receptor tyrosine kinase	protein-coding
3392	chr9	130072609	130074749	+	0	NA	intron (NR_104591, intron 2 of 26)	intron (NR_104591, intron 2 of 26)	46923	NM_032293	84253	Hs.29304	XM_005252267	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain-like 3	protein-coding
2860	chr4	13640844	13644985	+	0	NA	Intergenic	MER57B1|LTR|ERV1	13425	NR_049814	100847023		NR_049814	ENSG00000266240	MIR5091	-	microRNA 5091	ncRNA
3141	chr6	56516182	56518978	+	0	NA	intron (NM_183380, intron 6 of 93)	intron (NM_183380, intron 6 of 93)	-9886	NM_001723	667	Hs.735651	XM_005249310	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
1535	chr9	87839236	87840450	+	0	NA	Intergenic	Intergenic	517101	NM_001286715	23287	Hs.719980	XM_005251845	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
4978	chr9	117439062	117440387	+	0	NA	intron (NM_001199233, intron 1 of 4)	intron (NM_001199233, intron 1 of 4)	4645	NM_001199233	100505478	Hs.200101	NM_001199233		RP11-402G3.3	-	uncharacterized LOC100505478	protein-coding
3775	chr12	12955052	12958233	+	0	NA	Intergenic	Intergenic	-9638	NM_016355	51202	Hs.719938	NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding
4253	chr2	218190981	218192055	+	0	NA	intron (NR_026597, intron 9 of 12)	intron (NR_026597, intron 9 of 12)	429798	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
1335	chr6	114320733	114322063	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-29039	NR_033441	3066	Hs.3352	XM_005266954	ENSG00000196591	HDAC2	HD2|RPD3|YAF1	histone deacetylase 2	protein-coding
4652	chr5	112823393	112824992	+	0	NA	5' UTR (NM_001085377, exon 1 of 19)	5' UTR (NM_001085377, exon 1 of 19)	335	NM_001085377	4163	Hs.593171	XM_005271991	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
3780	chr12	15884153	15886645	+	0	NA	intron (NM_004447, intron 1 of 20)	MIRb|SINE|MIR	57111	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
3974	chr16	57671374	57672799	+	0	NA	intron (NM_001145772, intron 1 of 14)	L3|LINE|CR1	-1121	NM_001145774	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
4847	chr7	29645354	29646760	+	0	NA	Intergenic	Intergenic	42630	NM_175887	222171	Hs.91109	XM_005249653	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
3918	chr15	93387387	93389836	+	0	NA	Intergenic	Intergenic	-37462	NR_037600	100507217	Hs.622504	NR_037600	ENSG00000272888	LOC100507217	-	uncharacterized LOC100507217	ncRNA
3409	chrX	76264814	76267956	+	0	NA	Intergenic	L1MA9|LINE|L1	-126600	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
5011	chrX	76307692	76308413	+	0	NA	Intergenic	Intergenic	-168267	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
4490	chr3	140185429	140187593	+	0	NA	intron (NM_022131, intron 8 of 16)	intron (NM_022131, intron 8 of 16)	41120	NR_108084	101927808	Hs.581236	XR_241584	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
165	chr10	19942818	19944464	+	0	NA	intron (NM_001142308, intron 36 of 39)	intron (NM_001142308, intron 36 of 39)	-161731	NM_001282736	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
4579	chr4	149364698	149367183	+	0	NA	Intergenic	CpG-20176	-2268	NM_001166104	4306	Hs.163924	XM_005263014	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
2351	chr18	47374253	47376983	+	0	NA	intron (NM_001080467, intron 32 of 39)	intron (NM_001080467, intron 32 of 39)	35225	NR_003003	677769		NR_003003		SCARNA17	U91	small Cajal body-specific RNA 17	ncRNA
729	chr2	72788372	72789975	+	0	NA	intron (NM_015189, intron 7 of 21)	intron (NM_015189, intron 7 of 21)	264004	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
4509	chr3	194257724	194258456	+	0	NA	Intergenic	Intergenic	-46907	NR_047574	100507297	Hs.586059	NR_047573		TMEM44-AS1	AC046143.5	TMEM44 antisense RNA 1	ncRNA
2	chr1	5486928	5493012	+	0	NA	Intergenic	Intergenic	-134161	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
4229	chr2	150624015	150624837	+	0	NA	intron (NR_110240, intron 2 of 2)	intron (NR_110240, intron 2 of 2)	-180096	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
2125	chr14	85992623	86001596	+	0	NA	intron (NM_013231, intron 1 of 1)	intron (NM_013231, intron 1 of 1)	621	NM_013231	23768	Hs.744139	XM_005267489	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
2553	chr2	217556578	217560436	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	1765	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
1231	chr5	170696200	170697521	+	0	NA	intron (NM_022897, intron 25 of 27)	intron (NM_022897, intron 25 of 27)	-39428	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
2979	chr5	67690418	67693745	+	0	NA	Intergenic	Intergenic	103685	NM_001242466	5295	Hs.734132	XM_005248542	ENSG00000145675	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
3270	chr7	108094220	108097565	+	0	NA	intron (NM_001193582, intron 1 of 30)	CpG	949	NM_001193584	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
2446	chr2	30488053	30490204	+	0	NA	Intergenic	Intergenic	34731	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
973	chr3	127243570	127245789	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	49495	NR_106883	102466199		NR_106883		MIR6825	hsa-mir-6825	microRNA mir-6825	ncRNA
2961	chr5	10723399	10726765	+	0	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	36305	NM_004394	1611	Hs.75189	XM_005248261	ENSG00000112977	DAP	-	death-associated protein	protein-coding
2569	chr2	234674390	234676167	+	0	NA	intron (NM_000463, intron 1 of 4)	LTR1|LTR|ERV1	6359	NM_000463	54658	Hs.554822	NM_000463	ENSG00000242366	UGT1A1	BILIQTL1|GNT1|HUG-BR1|UDPGT|UDPGT 1-1|UGT1|UGT1A	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding
1046	chr4	41341297	41343133	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-19409	NM_001289124	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
319	chr12	27967405	27969099	+	0	NA	Intergenic	Intergenic	35065	NM_020782	57542	Hs.505104	NM_020782	ENSG00000087448	KLHL42	Ctb9|KLHDC5	kelch-like family member 42	protein-coding
4021	chr17	77823609	77827298	+	0	NA	Intergenic	L2a|LINE|L2	-12240	NM_003655	8535	Hs.405046	XM_005257753	ENSG00000141582	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
2571	chr2	239076182	239079775	+	0	NA	Intergenic	Intergenic	30615	NM_198582	377007	Hs.591595	XM_005246076	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
2857	chr4	1185193	1187544	+	0	NA	intron (NM_001199021, intron 1 of 7)	intron (NM_001199021, intron 1 of 7)	16382	NM_001199021	10417	Hs.736956	NM_001128325	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2, extracellular matrix protein	protein-coding
1179	chr5	93768009	93770181	+	0	NA	intron (NM_001145678, intron 14 of 20)	intron (NM_001145678, intron 14 of 20)	185214	NM_173665	285600	Hs.425123	XM_005271965	ENSG00000185261	KIAA0825	C5orf36	KIAA0825	protein-coding
1922	chr11	122286546	122295833	+	0	NA	Intergenic	Intergenic	-217419	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
735	chr2	76482885	76485431	+	0	NA	Intergenic	MER70B|LTR|ERVL	-546047	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
3048	chr6	9140202	9142464	+	0	NA	Intergenic	Intergenic	488891	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
2948	chr5	145322585	145327593	+	0	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	8963	NM_152550	153769	Hs.443728	XM_005268380	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
1271	chr6	12044533	12046073	+	0	NA	intron (NM_002114, intron 2 of 8)	MamSINE1|SINE|tRNA	32579	NM_002114	3096	Hs.567284	XM_005249041	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
4566	chr4	129375012	129377163	+	0	NA	Intergenic	Intergenic	-166103	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
344	chr12	20139609	20143268	+	0	NA	Intergenic	Intergenic	-26181	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
4682	chr5	150029417	150032561	+	0	NA	3' UTR (NM_001166209, exon 3 of 3)	3' UTR (NM_001166209, exon 3 of 3)	-9414	NM_001122853	91977	Hs.91626	NM_001122853	ENSG00000164591	MYOZ3	CS-3|CS3|FRP3	myozenin 3	protein-coding
2103	chr13	48731856	48735926	+	0	NA	Intergenic	Intergenic	-64614	NM_001270629	29079	Hs.741275	NM_001270629	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
2949	chr5	148699045	148701792	+	0	NA	intron (NM_001146337, intron 14 of 17)	intron (NM_001146337, intron 14 of 17)	-24559	NM_152407	134266	Hs.511816	XM_005268374	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE-like 2, mitochondrial (E. coli)	protein-coding
1710	chr1	94068786	94072892	+	0	NA	intron (NM_001261408, intron 5 of 13)	intron (NM_001261408, intron 5 of 13)	8863	NM_001261410	8412	Hs.36958	XM_005271251	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
4783	chr6	75991142	75992986	+	0	NA	intron (NM_018247, intron 1 of 6)	intron (NM_018247, intron 1 of 6)	2568	NM_018247	55754	Hs.108530	NM_001143958	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
2224	chr15	89609529	89612762	+	0	NA	Intergenic	Intergenic	-20236	NM_007011	11057	Hs.122337	XM_005254832	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
1133	chr5	716471	718263	+	0	NA	Intergenic	Intergenic	-23857	NM_007030	11076	Hs.481466	XM_005248237	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
2421	chr2	218201683	218203751	+	0	NA	intron (NR_026597, intron 8 of 12)	MIR3|SINE|MIR	418599	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
209	chr10	95890423	95892297	+	0	NA	intron (NM_001165979, intron 1 of 31)	intron (NM_001165979, intron 1 of 31)	42577	NM_001165979	51196	Hs.655033	XM_005269880	ENSG00000138193	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
2837	chr4	41505210	41517647	+	0	NA	intron (NM_014988, intron 2 of 26)	intron (NM_014988, intron 2 of 26)	-103361	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4456	chr3	106147605	106148361	+	0	NA	Intergenic	L2a|LINE|L2	-560096	NM_170662	868	Hs.430589	XM_005247852	ENSG00000114423	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
4132	chr2	100906756	100909345	+	0	NA	intron (NM_198461, intron 9 of 11)	intron (NM_198461, intron 9 of 11)	31145	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
1118	chr4	182873127	182874390	+	0	NA	Intergenic	Intergenic	191910	NR_027107	90768	Hs.175465	XR_244654		MGC45800	AC108142.1	uncharacterized LOC90768	ncRNA
1575	chrX	65094679	65095710	+	0	NA	Intergenic	MER50|LTR|ERV1	-143518	NR_029637	407008		NR_029637	ENSG00000207939	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
2428	chr2	45552	47823	+	0	NA	promoter-TSS (NM_001077710)	promoter-TSS (NM_001077710)	-99	NM_001077710	642273	Hs.8379	XM_005264697		FAM110C	-	family with sequence similarity 110, member C	protein-coding
4718	chr6	165969125	165971005	+	0	NA	intron (NM_001130690, intron 1 of 21)	intron (NM_001130690, intron 1 of 21)	105523	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
4460	chr3	108879293	108882355	+	0	NA	Intergenic	Intergenic	-16188	NR_026767	677779	Hs.618669	NM_001040054	ENSG00000214381	LINC00488	C3orf66	long intergenic non-protein coding RNA 488	ncRNA
4191	chr2	69478673	69479505	+	0	NA	Intergenic	Intergenic	135297	NM_001244710	2673	Hs.580300	NM_001244710	ENSG00000198380	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
600	chr18	6623855	6625393	+	0	NA	Intergenic	Intergenic	113209	NM_001243517	100130480	Hs.646267	NM_001243517	ENSG00000265944	C18orf64	-	chromosome 18 open reading frame 64	protein-coding
80	chr1	147895407	147897265	+	0	NA	intron (NR_102405, intron 16 of 17).2	intron (NR_102405, intron 16 of 17).2	35644	NR_027468	388685	Hs.745431	NM_207400		LINC01138	-	long intergenic non-protein coding RNA 1138	ncRNA
336	chr12	15870635	15872699	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	70843	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
457	chr14	36441993	36444557	+	0	NA	Intergenic	Intergenic	-96358	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	RP11-259K15.3	long intergenic non-protein coding RNA 609	ncRNA
4998	chrX	64862258	64865836	+	0	NA	Intergenic	Intergenic	-23464	NM_002444	4478	Hs.87752	XM_005262269	ENSG00000147065	MSN	HEL70	moesin	protein-coding
1301	chr6	43892888	43896558	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	35958	NR_024478	100132354	Hs.376232	NR_024478		LOC100132354	-	uncharacterized LOC100132354	ncRNA
383	chr12	88182361	88184046	+	0	NA	Intergenic	L1ME3C|LINE|L1	-4715	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
4945	chr9	36102505	36103211	+	0	NA	intron (NM_021111, intron 12 of 20)	AluY|SINE|Alu	-33675	NR_104641	152007	Hs.493819	XM_005251369	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
2532	chr2	161097004	161100617	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	29596	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
3817	chr12	88189890	88190775	+	0	NA	Intergenic	L2a|LINE|L2	-11844	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
1873	chr10	62516818	62518595	+	0	NA	Intergenic	Intergenic	-20383	NM_001170406	983	Hs.732435	XM_005270303	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin-dependent kinase 1	protein-coding
2497	chr2	99051508	99053761	+	0	NA	Intergenic	MER11C|LTR|ERVK	-8687	NM_001134225	3631	Hs.469386	XM_005263935	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase, type I, 107kDa	protein-coding
3651	chr10	20104200	20106382	+	0	NA	promoter-TSS (NM_032812)	promoter-TSS (NM_032812)	-81	NM_001282736	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
4157	chr2	30499167	30499940	+	0	NA	Intergenic	Intergenic	45156	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
92	chr1	168560921	168562425	+	0	NA	Intergenic	MIRb|SINE|MIR	15962	NM_002995	6375	Hs.546295	NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	chemokine (C motif) ligand 1	protein-coding
4791	chr6	90927196	90929333	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	78298	NM_021813	60468	Hs.269764	XM_005248758	ENSG00000112182	BACH2	BTBD25	BTB and CNC homology 1, basic leucine zipper transcription factor 2	protein-coding
3687	chr10	93271134	93272417	+	0	NA	intron (NM_001284274, intron 21 of 21)	L2a|LINE|L2	99442	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
1212	chr5	146549059	146550595	+	0	NA	Intergenic	Intergenic	-64752	NM_001287740	202374	Hs.585069	XM_005268385	ENSG00000169302	STK32A	YANK1	serine/threonine kinase 32A	protein-coding
2253	chr16	58297865	58299598	+	0	NA	intron (NM_001142302, intron 5 of 7)	intron (NM_001142302, intron 5 of 7)	14891	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
2787	chr3	111300053	111305184	+	0	NA	intron (NM_198196, intron 5 of 14)	THE1A-int|LTR|ERVL-MaLR	11564	NM_024508	79413	Hs.136912	NM_024508	ENSG00000177494	ZBED2	-	zinc finger, BED-type containing 2	protein-coding
2433	chr2	9674888	9678937	+	0	NA	exon (NM_003183, exon 3 of 19)	exon (NM_003183, exon 3 of 19)	19005	NM_003183	6868	Hs.404914	NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|TACE	ADAM metallopeptidase domain 17	protein-coding
1477	chr8	107635585	107637868	+	0	NA	intron (NM_001198533, intron 3 of 16)	L2a|LINE|L2	-33310	NM_181354	55074	Hs.701892	XM_005250993	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
1164	chr5	62036874	62039096	+	0	NA	Intergenic	Intergenic	163423	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
2824	chr3	194256041	194259475	+	0	NA	Intergenic	Intergenic	-47239	NR_047574	100507297	Hs.586059	NR_047573		TMEM44-AS1	AC046143.5	TMEM44 antisense RNA 1	ncRNA
4597	chr5	82853643	82855887	+	0	NA	intron (NM_004385, intron 12 of 14)	intron (NM_004385, intron 12 of 14)	87272	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
505	chr15	38916017	38917367	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-59685	NM_001128602	10125	Hs.591127	XM_005254113	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
2739	chr3	36688310	36692685	+	0	NA	Intergenic	Intergenic	90855	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
670	chr2	231897847	231900304	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-3206	NM_001144994	257407	Hs.551993	NM_001144994	ENSG00000204128	C2orf72	-	chromosome 2 open reading frame 72	protein-coding
1094	chr4	140985615	140988281	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	88285	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
419	chr13	34134336	34136023	+	0	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	115753	NM_001243476	90627	Hs.721224	XM_005266586	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
995	chr3	189658191	189660592	+	0	NA	Intergenic	Intergenic	111680	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
837	chr20	15910601	15912530	+	0	NA	intron (NM_001033087, intron 6 of 13)	intron (NM_001033087, intron 6 of 13)	642514	NM_024704	55614	Hs.101774	XM_005260750	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
2015	chr12	122580569	122586633	+	0	NA	intron (NM_014938, intron 1 of 16)	AluJo|SINE|Alu	66949	NM_014938	22877	Hs.731847	NM_014938		MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
4521	chr4	169557209	169558613	+	0	NA	intron (NM_001166109, intron 1 of 18)	Plat_L3|LINE|CR1	5143	NM_001166109	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
625	chr18	52923163	52924917	+	0	NA	intron (NM_001243235, intron 7 of 12)	intron (NM_001243235, intron 7 of 12)	45812	NM_001243236	6925	Hs.605153	XM_005266738	ENSG00000196628	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
149	chr10	29127745	29131609	+	0	NA	Intergenic	Intergenic	-5660	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
3208	chr7	30834492	30837718	+	0	NA	intron (NR_037598, intron 7 of 19)	intron (NR_037598, intron 7 of 19)	25072	NM_032222	84182	Hs.660192	XM_005249884	ENSG00000106125	FAM188B	C7orf67	family with sequence similarity 188, member B	protein-coding
3839	chr12	120050942	120052072	+	0	NA	intron (NM_001136534, intron 1 of 2)	AluJo|SINE|Alu	20243	NM_001136534	387890	Hs.530965	XM_005253880	ENSG00000224982	TMEM233	DSPB2|IFITMD2	transmembrane protein 233	protein-coding
406	chr13	76297490	76301362	+	0	NA	intron (NM_005358, intron 3 of 29)	intron (NM_005358, intron 3 of 29)	-35371	NM_015842	4008	Hs.207631	XM_005266375	ENSG00000136153	LMO7	FBX20|FBXO20|LOMP	LIM domain 7	protein-coding
2289	chr17	12529079	12532561	+	0	NA	intron (NR_034145, intron 3 of 3)	intron (NR_034145, intron 3 of 3)	-38387	NM_153604	93649	Hs.567641	XM_005256863	ENSG00000141052	MYOCD	MYCD	myocardin	protein-coding
4798	chr6	117840549	117844269	+	0	NA	intron (NM_173674, intron 3 of 14)	intron (NM_173674, intron 3 of 14)	38589	NM_173674	285761	Hs.658304	XM_005266941	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
3283	chr7	134831718	134834585	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	385	NM_018295	55281	Hs.521213	NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
2312	chr17	70334189	70336127	+	0	NA	Intergenic	Intergenic	217997	NM_000346	6662	Hs.647409	NM_000346	ENSG00000125398	SOX9	CMD1|CMPD1|SRA1	SRY (sex determining region Y)-box 9	protein-coding
19	chr1	5482665	5484178	+	0	NA	Intergenic	Intergenic	-140710	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
3096	chr6	11275209	11279275	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-44327	NM_001271033	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
3637	chr10	3936543	3937821	+	0	NA	Intergenic	Intergenic	-96170	NR_106726	102464829		NR_106726		MIR6078	hsa-mir-6078	microRNA mir-6078	ncRNA
1030	chr4	20883970	20886024	+	0	NA	promoter-TSS (NM_025221)	promoter-TSS (NM_025221)	-664	NM_025221	80333	Hs.655705	XM_005248188	ENSG00000185774	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
365	chr12	70380628	70382755	+	0	NA	Intergenic	Intergenic	208959	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
2730	chr3	4791379	4796666	+	0	NA	promoter-TSS (NR_004428)	promoter-TSS (NR_004428)	-748	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
763	chr2	136763175	136765008	+	0	NA	intron (NR_110199, intron 3 of 3)	L1ME2z|LINE|L1	-20869	NM_001349	1615	Hs.503787	XM_005263614	ENSG00000115866	DARS	HBSL	aspartyl-tRNA synthetase	protein-coding
3255	chr7	85348319	85350967	+	0	NA	Intergenic	Intergenic	-598396	NM_152754	223117	Hs.201340	XM_005250229	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
3332	chr9	101005736	101020343	+	0	NA	intron (NR_051978, intron 1 of 11)	intron (NR_051978, intron 1 of 11)	4964	NR_051978	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
4632	chr5	81652613	81653938	+	0	NA	Intergenic	Intergenic	52109	NM_001017971	92270	Hs.729805	NM_001017971	ENSG00000205464	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
2021	chr12	7981319	7989590	+	0	NA	intron (NM_001286237, intron 1 of 9)	intron (NM_001286237, intron 1 of 9)	40181	NM_153449	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
3430	chrX	106973321	106976393	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-14566	NM_004089	1831	Hs.522074	XM_005262098	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
4590	chr4	184718031	184719908	+	0	NA	Intergenic	CpG	-107540	NM_020225	56977	Hs.696657	XM_005263142	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
3318	chr8	135868071	135872427	+	0	NA	Intergenic	L2c|LINE|L2	-53061	NR_029599	407033		NR_029599	ENSG00000199153	MIR30D	MIRN30D	microRNA 30d	ncRNA
570	chr17	77888039	77890304	+	0	NA	Intergenic	Intergenic	35485	NM_001271844	125058	Hs.369819	XM_005257049	ENSG00000167291	TBC1D16	-	TBC1 domain family, member 16	protein-coding
3123	chr6	31912500	31914643	+	0	NA	promoter-TSS (NM_001710).3	promoter-TSS (NM_001710).3	-150	NM_001710	629	Hs.69771	NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
1880	chr10	70065242	70067284	+	0	NA	intron (NM_022129, intron 2 of 9)	intron (NM_022129, intron 2 of 9)	-25505	NM_012207	3189	Hs.643472	XM_005269748	ENSG00000096746	HNRNPH3	2H9|HNRPH3	heterogeneous nuclear ribonucleoprotein H3 (2H9)	protein-coding
3761	chr12	47785939	47792500	+	0	NA	Intergenic	Intergenic	-178993	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
252	chr11	20008947	20011074	+	0	NA	intron (NM_001244963, intron 12 of 39)	intron (NM_001244963, intron 12 of 39)	-34092	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
4883	chr7	116449216	116451255	+	0	NA	Intergenic	Intergenic	-52328	NM_006136	830	Hs.446123	XR_242266		CAPZA2	CAPPA2|CAPZ	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding
4063	chr17	77892536	77893618	+	0	NA	Intergenic	Intergenic	31579	NM_001271844	125058	Hs.369819	XM_005257049	ENSG00000167291	TBC1D16	-	TBC1 domain family, member 16	protein-coding
3389	chr9	124039686	124042790	+	0	NA	intron (NM_001127662, intron 1 of 16)	intron (NM_001127662, intron 1 of 16)	6570	NR_103560	57000	Hs.522373	NR_103560	ENSG00000235865	GSN-AS1	C9orf31|MOST2	GSN antisense RNA 1	ncRNA
883	chr21	41222806	41225791	+	0	NA	Intergenic	MER67B|LTR|ERV1	-15049	NM_006198	5121	Hs.80296	NM_006198	ENSG00000183036	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
4805	chr6	134838352	134838883	+	0	NA	Intergenic	Intergenic	79089	NR_038218	154092	Hs.223718	XR_245507		LINC01010	RP11-557H15.2	long intergenic non-protein coding RNA 1010	ncRNA
4610	chr5	17223636	17225666	+	0	NA	intron (NM_006317, intron 1 of 1)	intron (NM_006317, intron 1 of 1)	6981	NM_006317	10409	Hs.646924	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
1998	chr12	26277556	26280287	+	0	NA	promoter-TSS (NM_030762)	promoter-TSS (NM_030762)	-918	NM_030762	79365	Hs.177841	XM_005253481	ENSG00000123095	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	basic helix-loop-helix family, member e41	protein-coding
2930	chr5	32685866	32688790	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-23415	NM_001204376	4883	Hs.619466	XM_005248309	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
1367	chr6	144478446	144480551	+	0	NA	intron (NM_003764, intron 1 of 1)	intron (NM_003764, intron 1 of 1)	7844	NM_003764	8676	Hs.118958	XM_005267188		STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
3825	chr12	93013212	93014442	+	0	NA	Intergenic	LTR3B_|LTR|ERVK	-82792	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
1070	chr4	41711454	41713359	+	0	NA	Intergenic	Intergenic	38581	NM_003924	8929	Hs.87202	NM_003924	ENSG00000109132	PHOX2B	NBLST2|NBPhox|PMX2B	paired-like homeobox 2b	protein-coding
3117	chr6	28509489	28512879	+	0	NA	Intergenic	MIRb|SINE|MIR	17395	NM_003996	2880	Hs.248129	NM_001509	ENSG00000224586	GPX5	HEL-S-75p	glutathione peroxidase 5 (epididymal androgen-related protein)	protein-coding
3618	chr1	245318739	245320642	+	0	NA	exon (NM_018012, exon 2 of 15)	exon (NM_018012, exon 2 of 15)	1403	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
3275	chr7	113725055	113727700	+	0	NA	promoter-TSS (NR_033766)	promoter-TSS (NR_033766)	12	NR_033766	93986	Hs.282787	NM_001172766	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
2463	chr2	55322559	55325675	+	0	NA	Intergenic	L2c|LINE|L2	-46383	NM_153828	57142	Hs.637850	XM_005264434	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
4332	chr20	22989960	22991156	+	0	NA	Intergenic	Intergenic	-25499	NM_001052	6754	Hs.673846	NM_001052	ENSG00000132671	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
2493	chr2	86204966	86207397	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	44810	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
105	chr1	183591380	183593322	+	0	NA	Intergenic	Intergenic	12725	NM_001270439	10092	Hs.518609	NM_001270439	ENSG00000162704	ARPC5	ARC16|dJ127C7.3|p16-Arc	actin related protein 2/3 complex, subunit 5, 16kDa	protein-coding
4500	chr3	159846510	159848330	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	77459	NR_108088	101928376	Hs.565865	XR_241609	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
2380	chr19	42255891	42268696	+	0	NA	intron (NM_002483, intron 2 of 5)	intron (NM_002483, intron 2 of 5)	2895	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)	protein-coding
111	chr1	184376623	184378746	+	0	NA	intron (NM_030806, intron 1 of 5)	intron (NM_030806, intron 1 of 5)	21534	NM_030806	81563	Hs.744936	NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
3549	chr1	179143984	179145525	+	0	NA	intron (NM_007314, intron 1 of 11)	intron (NM_007314, intron 1 of 11)	-32530	NM_001136000	27	Hs.159472	XM_005245088	ENSG00000143322	ABL2	ABLL|ARG	c-abl oncogene 2, non-receptor tyrosine kinase	protein-coding
408	chr13	22809519	22810385	+	0	NA	intron (NR_103810, intron 1 of 1)	intron (NR_103810, intron 1 of 1)	25528	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
4776	chr6	47374504	47376077	+	0	NA	Intergenic	Intergenic	-70235	NM_012120	23607	Hs.485518	XM_005248976	ENSG00000198087	CD2AP	CMS	CD2-associated protein	protein-coding
3577	chr1	203661004	203663186	+	0	NA	intron (NM_001001396, intron 2 of 21)	intron (NM_001001396, intron 2 of 21)	-36614	NR_003019	677843	Hs.676135	NR_003019		SNORA77	ACA63	small nucleolar RNA, H/ACA box 77	snoRNA
2777	chr3	102696630	102700614	+	0	NA	Intergenic	L1MA1|LINE|L1	544763	NM_175056	131368	Hs.352213	XM_005247110	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
559	chr16	66185473	66188431	+	0	NA	Intergenic	Intergenic	-213573	NM_001795	1003	Hs.76206	XM_005255757	ENSG00000179776	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
3601	chr1	226369263	226371075	+	0	NA	intron (NM_022735, intron 1 of 7)	AluSz|SINE|Alu	4254	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
580	chr17	20098683	20102051	+	0	NA	intron (NM_001033554, intron 1 of 5)	MER51-int|LTR|ERV1	41060	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
4956	chr9	85662555	85663174	+	0	NA	intron (NM_152573, intron 1 of 16)	intron (NM_152573, intron 1 of 16)	15179	NM_152573	158158	Hs.129136	XM_005251730	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
2800	chr3	122887443	122889486	+	0	NA	Intergenic	Intergenic	7823	NR_106960	102465667		NR_106960		MIR7110	hsa-mir-7110	microRNA mir-7110	ncRNA
2523	chr2	150587937	150591904	+	0	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-145590	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
4618	chr5	39398935	39401719	+	0	NA	intron (NM_001244871, intron 1 of 13)	intron (NM_001244871, intron 1 of 13)	25008	NM_001244871	1601	Hs.696631	XM_005248260	ENSG00000153071	DAB2	DOC-2|DOC2	Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)	protein-coding
3808	chr12	69797657	69801107	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	45850	NM_006530	8089	Hs.4029	XM_005269163	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
1257	chr6	1135355	1138046	+	0	NA	Intergenic	Intergenic	-35133	NR_027115	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
31	chr1	17292223	17294825	+	0	NA	intron (NM_014675, intron 30 of 36)	AluJb|SINE|Alu	13649	NM_001135248	4237	Hs.389137	NM_001135247	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
4717	chr6	158479961	158483182	+	0	NA	intron (NM_003898, intron 7 of 26)	intron (NM_003898, intron 7 of 26)	43491	NM_001178088	8871	Hs.434494	XM_005267197	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
4093	chr18	53522630	53524123	+	0	NA	Intergenic	Intergenic	-220188	NM_001243226	6925	Hs.605153	XM_005266738	ENSG00000196628	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
2307	chr17	62984458	62986277	+	0	NA	Intergenic	Intergenic	-13664	NR_026903	201283	Hs.396447	NM_153032	ENSG00000214174	AMZ2P1	-	archaelysin family metallopeptidase 2 pseudogene 1	pseudo
2706	chr3	114817900	114820429	+	0	NA	intron (NM_015642, intron 1 of 9)	intron (NM_015642, intron 1 of 9)	-28903	NM_001164343	26137	Hs.744879	XM_005247325	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|RP11-553L6.5|ZNF288	zinc finger and BTB domain containing 20	protein-coding
4439	chr3	65938975	65940811	+	0	NA	intron (NM_004742, intron 1 of 22)	intron (NM_004742, intron 1 of 22)	60402	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
4160	chr2	33444577	33446042	+	0	NA	intron (NM_000627, intron 4 of 29)	intron (NM_000627, intron 4 of 29)	85645	NM_001166266	4052	Hs.619315	XM_005264315	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
3336	chr9	136920035	136922482	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	11883	NM_007371	8019	Hs.654869	XM_005272214	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
4629	chr5	71543488	71545718	+	0	NA	intron (NM_001286748, intron 4 of 11)	intron (NM_001286748, intron 4 of 11)	71481	NM_001286751	23107	Hs.482491	XM_005248471	ENSG00000113048	MRPS27	MRP-S27|S27mt	mitochondrial ribosomal protein S27	protein-coding
2133	chr14	32981633	32984569	+	0	NA	intron (NM_004274, intron 2 of 13)	L1ME4a|LINE|L1	184622	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
968	chr3	119888164	119890337	+	0	NA	intron (NM_001168271, intron 8 of 8)	intron (NM_001168271, intron 8 of 8)	73892	NM_001168271	165829	Hs.333358	XM_005247165	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
675	chr2	1656718	1657896	+	0	NA	intron (NM_012293, intron 16 of 22)	intron (NM_012293, intron 16 of 22)	90984	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
4969	chr9	100994061	100995141	+	0	NA	intron (NM_001267571, intron 4 of 12)	intron (NM_001267571, intron 4 of 12)	-3102	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA mir-6854	ncRNA
4722	chr6	1055350	1057176	+	0	NA	intron (NR_027116, intron 1 of 3)	intron (NR_027116, intron 1 of 3)	45304	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
431	chr13	49482082	49484468	+	0	NA	Intergenic	Intergenic	-66773	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
3541	chr1	168677768	168679964	+	0	NA	intron (NM_001937, intron 2 of 3)	intron (NM_001937, intron 2 of 3)	19576	NM_001937	1805	Hs.80552	NM_001937	ENSG00000143196	DPT	TRAMP	dermatopontin	protein-coding
382	chr12	88158154	88160425	+	0	NA	Intergenic	Intergenic	19199	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
3487	chr1	41174099	41176666	+	0	NA	intron (NM_001142590, intron 2 of 14)	intron (NM_001142590, intron 2 of 14)	-17449	NR_024567	100130557	Hs.233458	NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
2846	chr4	141008994	141028501	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	56486	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
4208	chr2	100901963	100902970	+	0	NA	intron (NM_198461, intron 11 of 11)	intron (NM_198461, intron 11 of 11)	36729	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
4729	chr6	7504930	7506483	+	0	NA	Intergenic	Intergenic	-36164	NM_001008844	1832	Hs.519873	XM_005248864	ENSG00000096696	DSP	DP|DPI|DPII	desmoplakin	protein-coding
4329	chr20	22469947	22472787	+	0	NA	Intergenic	Intergenic	-70086	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	RP5-1004I9.1	-	uncharacterized LOC284788	ncRNA
3863	chr13	50649534	50651215	+	0	NA	intron (NR_002612, intron 1 of 10)	AluSq2|SINE|Alu	-5931	NR_002605	10301	Hs.712880	XR_245432	ENSG00000176124	DLEU1	BCMS|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1 (non-protein coding)	ncRNA
139	chr1	233578091	233580295	+	0	NA	Intergenic	MIRc|SINE|MIR	115679	NM_032435	84451	Hs.547779	NM_032435	ENSG00000143674	KIAA1804	MLK4|RP5-862P8.2|dJ862P8.3	mixed lineage kinase 4	protein-coding
129	chr1	213097419	213099246	+	0	NA	Intergenic	Intergenic	-25555	NM_001136474	79805	Hs.96885	XM_005273268	ENSG00000143494	VASH2	RP11-275G3.1	vasohibin 2	protein-coding
4662	chr5	127210913	127212650	+	0	NA	Intergenic	Intergenic	206985	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
3008	chr5	127210599	127214504	+	0	NA	Intergenic	Intergenic	206215	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
926	chr3	24169219	24171584	+	0	NA	intron (NM_001128177, intron 9 of 10)	intron (NM_001128177, intron 9 of 10)	-25663	NR_026834	152024	Hs.385606	XR_245096	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
4377	chr21	47928653	47930603	+	0	NA	intron (NM_001146116, intron 7 of 37)	intron (NM_001146116, intron 7 of 37)	47244	NR_046400	100862692	Hs.737163	NR_046400		DIP2A-IT1	AP000337.3	DIP2A intronic transcript 1 (non-protein coding)	ncRNA
1246	chr6	119814409	119816210	+	0	NA	Intergenic	Intergenic	-2842	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
1083	chr4	77688313	77690198	+	0	NA	intron (NM_020859, intron 9 of 10)	intron (NM_020859, intron 9 of 10)	129747	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
4000	chr16	67950978	67952179	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	14200	NM_001907	1506	Hs.654546	NM_001907		CTRL	CTRL1	chymotrypsin-like	protein-coding
1293	chr6	31039752	31041590	+	0	NA	Intergenic	L1ME4a|LINE|L1	19444	NR_003948	285834	Hs.207528	NR_003948	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22	ncRNA
3024	chr5	140418343	140421376	+	0	NA	Intergenic	Intergenic	-11102	NM_013340	29930	Hs.278950	NM_013340	ENSG00000171815	PCDHB1	PCDH-BETA1	protocadherin beta 1	protein-coding
1792	chr1	221289322	221293630	+	0	NA	Intergenic	Intergenic	218162	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
662	chr2	175469395	175474090	+	0	NA	intron (NM_001077269, intron 1 of 7)	MSTD|LTR|ERVL-MaLR	27565	NM_003387	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
168	chr10	20219730	20221603	+	0	NA	intron (NM_001282736, intron 1 of 12)	intron (NM_001282736, intron 1 of 12)	115294	NM_032812	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
4789	chr6	85684698	85688184	+	0	NA	Intergenic	Intergenic	-212487	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
1518	chr9	27117021	27119481	+	0	NA	intron (NM_000459, intron 1 of 22)	MIRb|SINE|MIR	9104	NM_000459	7010	Hs.89640	XM_005251561	ENSG00000120156	TEK	CD202B|TIE-2|TIE2|VMCM|VMCM1	TEK tyrosine kinase, endothelial	protein-coding
3447	chr1	22740442	22741526	+	0	NA	Intergenic	Intergenic	-37360	NM_014870	9923	Hs.418966	NM_001083621	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
3444	chr1	184942468	184943958	+	0	NA	intron (NM_052966, intron 1 of 13)	CpG	505	NM_052966	116496	Hs.518662	XM_005244873	ENSG00000135842	FAM129A	C1orf24|NIBAN	family with sequence similarity 129, member A	protein-coding
178	chr10	37851566	37853802	+	0	NA	Intergenic	Intergenic	39175	NM_001190489	100288485	Hs.727092	NM_001190489	ENSG00000256892	MTRNR2L7	HN7	MT-RNR2-like 7	protein-coding
3156	chr6	108902051	108904437	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	21175	NM_001455	2309	Hs.220950	XM_005266867	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
2728	chr3	187120690	187122729	+	0	NA	Intergenic	Intergenic	35541	NM_022147	64108	Hs.43388	NM_022147		RTP4	IFRG28	receptor (chemosensory) transporter protein 4	protein-coding
3992	chr16	57660225	57668744	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	2065	NM_001145771	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
3439	chrX	153305272	153317630	+	0	NA	intron (NM_001110792, intron 1 of 2)	intron (NM_001110792, intron 1 of 2)	-26011	NR_031757	100313781		NR_031757	ENSG00000211524	MIR718	hsa-mir-718	microRNA 718	ncRNA
124	chr1	202545192	202547215	+	0	NA	intron (NM_032104, intron 12 of 12)	intron (NM_032104, intron 12 of 12)	36961	NM_001197131	4660	Hs.444403	XM_005245199	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
1429	chr7	116772053	116773747	+	0	NA	intron (NM_018412, intron 6 of 14)	L3|LINE|CR1	12746	NR_109981	93654	Hs.745258	XR_242335	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
4259	chr2	227049754	227050805	+	0	NA	Intergenic	Intergenic	42769	NR_046102	646736	Hs.712836	XR_241316		LOC646736	-	uncharacterized LOC646736	ncRNA
1974	chr11	119230560	119233674	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	2775	NM_171997	9099	Hs.524085	XM_005271721	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
2536	chr2	175475566	175483388	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	19830	NM_003387	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
4988	chr9	128275553	128276679	+	0	NA	intron (NM_001006617, intron 7 of 11)	intron (NM_001006617, intron 7 of 11)	193397	NM_001006619	79109	Hs.495138	XM_005252203	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
4350	chr20	47154927	47156183	+	0	NA	Intergenic	Intergenic	166901	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	RP1-66N13.3	long intergenic non-protein coding RNA 494	ncRNA
3611	chr1	234640913	234641709	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	26214	NR_038426	100506795	Hs.448989	XR_247017	ENSG00000231768	RP5-855F14.1	-	uncharacterized LOC100506795	ncRNA
2483	chr2	72897430	72906111	+	0	NA	intron (NM_015189, intron 6 of 21)	AluY|SINE|Alu	151407	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
1374	chr6	156877761	156879788	+	0	NA	Intergenic	Intergenic	-220290	NM_017519	57492	Hs.744461	XM_005267069	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
2807	chr3	138315390	138317396	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-3168	NM_001288965	80321	Hs.531962	XM_005247802	ENSG00000114107	CEP70	BITE	centrosomal protein 70kDa	protein-coding
2303	chr17	60187053	60189964	+	0	NA	Intergenic	Intergenic	-45865	NM_005121	9969	Hs.282678	XM_005257898	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
2259	chr16	71699840	71702129	+	0	NA	intron (NM_015020, intron 12 of 18)	intron (NM_015020, intron 12 of 18)	31620	NR_033337	100379141	Hs.725116	NR_033337		SNORA70D	U70D	small nucleolar RNA, H/ACA box 70D	snoRNA
2212	chr15	71144121	71152899	+	0	NA	intron (NM_001284357, intron 1 of 16)	MER5A1|DNA|hAT-Charlie	-1906	NM_197958	55323	Hs.416755	NM_001286679	ENSG00000166173	LARP6	ACHN	La ribonucleoprotein domain family, member 6	protein-coding
716	chr2	67485995	67489068	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-45080	NR_038844	644838	Hs.145561	NR_038844	ENSG00000236780	AC078941.1	-	uncharacterized LOC644838	ncRNA
1886	chr10	78012037	78013576	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	470287	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
1972	chr11	118122255	118123667	+	0	NA	non-coding (NR_104405, exon 1 of 5)	non-coding (NR_104405, exon 1 of 5)	122	NR_104404	196264	Hs.15396	XM_005271427		MPZL3	-	myelin protein zero-like 3	protein-coding
940	chr3	36704222	36706113	+	0	NA	Intergenic	LTR81A|LTR|Gypsy	76185	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
685	chr2	18080591	18083718	+	0	NA	intron (NM_002252, intron 1 of 2)	MIR|SINE|MIR	22230	NM_002252	3790	Hs.414489	XM_005262614	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
4169	chr2	42148705	42150334	+	0	NA	Intergenic	Intergenic	11344	NR_110263	101929723	Hs.369330	XR_244994		AC104654.2	-	uncharacterized LOC101929723	ncRNA
21	chr1	5562550	5563672	+	0	NA	Intergenic	Intergenic	-61020	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
4862	chr7	75572833	75576558	+	0	NA	intron (NM_000941, intron 1 of 15)	L1MDa|LINE|L1	1594	NR_002955	677801	Hs.689708	NR_002955	ENSG00000201643	SNORA14A	ACA14a	small nucleolar RNA, H/ACA box 14A	snoRNA
523	chr15	89604675	89606812	+	0	NA	Intergenic	AluJb|SINE|Alu	-25638	NM_007011	11057	Hs.122337	XM_005254832	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
4360	chr21	44629439	44631455	+	0	NA	Intergenic	Intergenic	41306	NM_000394	1409	Hs.184085	XM_005261093	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
3823	chr12	92987257	92989000	+	0	NA	Intergenic	Intergenic	-108491	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
2377	chr19	34721811	34726190	+	0	NA	Intergenic	Intergenic	-21456	NM_014686	9710	Hs.330073	XM_005259444	ENSG00000166398	KIAA0355	-	KIAA0355	protein-coding
3975	chr16	77331586	77333297	+	0	NA	intron (NM_199355, intron 17 of 22)	AluJb|SINE|Alu	99092	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
1460	chr8	33171361	33173955	+	0	NA	Intergenic	Intergenic	158006	NM_032664	84750	Hs.458713	XM_005273664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
453	chr14	25500903	25502139	+	0	NA	intron (NM_014178, intron 1 of 5)	intron (NM_014178, intron 1 of 5)	17574	NM_014178	29091	Hs.508958	XM_005267556	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
2500	chr2	100901445	100903541	+	0	NA	intron (NM_198461, intron 11 of 11)	intron (NM_198461, intron 11 of 11)	36702	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
3937	chr15	59885935	59888887	+	0	NA	Intergenic	Intergenic	-16571	NM_004751	9245	Hs.194710	XM_005254785	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
1202	chr5	133944275	133946975	+	0	NA	intron (NM_001033503, intron 5 of 7)	(TAAAAA)n|Simple_repeat|Simple_repeat	22908	NM_001033503	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
3162	chr6	114106476	114108819	+	0	NA	Intergenic	Intergenic	-70880	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
3895	chr14	65227435	65232578	+	0	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	22398	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA mir-7855	ncRNA
3303	chr8	50967856	50970584	+	0	NA	intron (NM_001287814, intron 1 of 16)	MIR|SINE|MIR	144881	NM_018967	54212	Hs.591869	XM_005251261	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin, gamma 1	protein-coding
351	chr12	25981651	25983399	+	0	NA	Intergenic	Intergenic	44487	NR_036188	100422897		NR_036188		MIR4302	-	microRNA 4302	ncRNA
2838	chr4	55523708	55526102	+	0	NA	intron (NM_001093772, intron 1 of 20)	CpG	810	NM_001093772	3815	Hs.479754	XM_005265740	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
595	chr17	81040683	81042588	+	0	NA	intron (NM_001004431, intron 1 of 3)	intron (NM_001004431, intron 1 of 3)	4068	NM_001004431	284207	Hs.378821	XM_005256349	ENSG00000176845	METRNL	-	meteorin, glial cell differentiation regulator-like	protein-coding
2926	chr5	95152571	95162713	+	0	NA	intron (NM_002064, intron 1 of 2)	intron (NM_002064, intron 1 of 2)	935	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
1854	chr10	19000986	19003470	+	0	NA	Intergenic	Intergenic	53915	NM_178815	221079	Hs.594569	XM_005252400	ENSG00000165997	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
1498	chr9	85768968	85770304	+	0	NA	Intergenic	Intergenic	-91593	NM_152573	158158	Hs.129136	XM_005251730	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
835	chr20	11786585	11789387	+	0	NA	Intergenic	L1ME1|LINE|L1	-83385	NM_001282552	22903	Hs.709366	XM_005260676	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
1267	chr6	11251553	11253082	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-19402	NM_001271033	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
4620	chr5	52713956	52715452	+	0	NA	Intergenic	Intergenic	-61560	NM_006350	10468	Hs.9914	XM_005248400	ENSG00000134363	FST	FS	follistatin	protein-coding
4015	chr17	20117734	20121477	+	0	NA	intron (NM_001033554, intron 2 of 5)	LTR34|LTR|ERV1	60298	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
113	chr1	185527259	185529392	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-175358	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
901	chr3	16497713	16499654	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	56539	NM_015150	23180	Hs.98910	XM_005264985	ENSG00000131378	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
2191	chr15	44484453	44488383	+	0	NA	intron (NM_001286490, intron 1 of 15)	intron (NM_001286490, intron 1 of 15)	226	NM_001286490	84978	Hs.578544	XM_005254729	ENSG00000171877	FRMD5	-	FERM domain containing 5	protein-coding
1056	chr4	41530229	41531468	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-83941	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
3664	chr10	63842452	63843570	+	0	NA	intron (NM_032199, intron 8 of 9)	intron (NM_032199, intron 8 of 9)	34041	NM_001244638	84159	Hs.535297	XM_005270215	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
3108	chr6	19837399	19839842	+	0	NA	intron (NM_001546, intron 1 of 2)	CpG	1019	NM_001546	3400	Hs.663469	XM_005249076		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
4365	chr21	33754161	33756127	+	0	NA	intron (NM_014825, intron 4 of 38)	intron (NM_014825, intron 4 of 38)	-5513	NR_002996	677846	Hs.712293	NR_002996		SNORA80	ACA67	small nucleolar RNA, H/ACA box 80	snoRNA
4285	chr20	4924702	4932836	+	0	NA	intron (NM_203327, intron 2 of 16)	intron (NM_203327, intron 2 of 16)	53376	NM_005116	9962	Hs.516866	XM_005260901	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
2753	chr3	57737267	57739172	+	0	NA	Intergenic	Intergenic	-4955	NM_007159	7871	Hs.476432	XM_005265456	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
1473	chr8	106728595	106729924	+	0	NA	intron (NM_012082, intron 5 of 7)	intron (NM_012082, intron 5 of 7)	398112	NM_012082	23414	Hs.431009	XM_005250850	ENSG00000169946	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
881	chr21	41216252	41219064	+	0	NA	Intergenic	Intergenic	-21689	NM_006198	5121	Hs.80296	NM_006198	ENSG00000183036	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
2461	chr2	53324647	53327430	+	0	NA	Intergenic	Intergenic	-668891	NM_001008708	494143	Hs.585944	XM_005264336	ENSG00000143942	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
3186	chr6	150920470	150922286	+	0	NA	intron (NM_001029884, intron 1 of 16)	CpG	379	NM_001029884	57480	Hs.189781	XM_005267064	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
405	chr13	43466524	43468162	+	0	NA	intron (NM_001002264, intron 11 of 12)	L2a|LINE|L2	99064	NM_001002264	94240	Hs.546467	XM_005266596	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1 (breast)	protein-coding
507	chr15	39480422	39482186	+	0	NA	Intergenic	Intergenic	-61581	NM_207445	400360	Hs.376109	NM_207445	ENSG00000175746	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
3843	chr12	124999532	125006045	+	0	NA	intron (NM_006312, intron 2 of 48)	intron (NM_006312, intron 2 of 48)	49222	NM_006312	9612	Hs.137510	XM_005253638	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
1734	chr1	160510209	160513502	+	0	NA	3' UTR (NM_003874, exon 7 of 7)	3' UTR (NM_003874, exon 7 of 7)	-18803	NM_052931	114836	Hs.492348	XM_005244865	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
3565	chr1	201138441	201141766	+	0	NA	intron (NM_001288564, intron 1 of 5)	CpG	607	NM_001288564	252839	Hs.181444	XM_005245063	ENSG00000116857	TMEM9	TMEM9A	transmembrane protein 9	protein-coding
3230	chr7	28447496	28450966	+	0	NA	intron (NM_182899, intron 1 of 9)	CpG	-2913	NM_182898	9586	Hs.437075	XM_005249906	ENSG00000146592	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
1258	chr6	1285845	1288374	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-25566	NM_033260	94234	Hs.591352	NM_033260	ENSG00000164379	FOXQ1	HFH1	forkhead box Q1	protein-coding
4030	chr17	19574009	19577336	+	0	NA	intron (NM_000382, intron 9 of 9)	intron (NM_000382, intron 9 of 9)	23608	NM_001031806	224	Hs.499886	NM_000382	ENSG00000072210	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family, member A2	protein-coding
2313	chr17	70574207	70580173	+	0	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	11753	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
392	chr12	101414799	101416328	+	0	NA	intron (NM_001286615, intron 9 of 27)	intron (NM_001286615, intron 9 of 27)	120139	NM_001286616	121601	Hs.58785	XM_005268648	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
3653	chr10	23105467	23106759	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-102610	NM_005028	5305	Hs.57079	XM_005252470	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
2242	chr16	1345228	1349101	+	0	NA	Intergenic	LTR10A|LTR|ERV1	-11990	NM_194260	7329	Hs.302903	XM_005255540	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
2254	chr16	66772875	66777713	+	0	NA	intron (NM_001286157, intron 3 of 11)	intron (NM_001286157, intron 3 of 11)	10231	NM_006141	1783	Hs.369068	XM_005255831	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein, cytoplasmic 1, light intermediate chain 2	protein-coding
3354	chr9	71939096	71941276	+	0	NA	intron (NM_001127608, intron 1 of 10)	CpG	698	NM_001127608	9413	Hs.118003	XM_005252307	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	family with sequence similarity 189, member A2	protein-coding
813	chr20	10059688	10061873	+	0	NA	intron (NR_040710, intron 3 of 4)	intron (NR_040710, intron 3 of 4)	45083	NM_198798	63926	Hs.70903	XM_005260792	ENSG00000132623	ANKEF1	ANKRD5|dJ839B4.6	ankyrin repeat and EF-hand domain containing 1	protein-coding
2014	chr12	117932007	117934441	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-133617	NM_001204218	4842	Hs.735734	XM_005253885	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
644	chr19	35895533	35897234	+	0	NA	promoter-TSS (NR_040046)	promoter-TSS (NR_040046)	-126	NR_040046	100128682	Hs.570008	NR_040046	ENSG00000205786	AC002511.1	-	uncharacterized LOC100128682	ncRNA
2477	chr2	69134558	69137001	+	0	NA	Intergenic	Intergenic	-37130	NM_014482	27302	Hs.158317	NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
3360	chr9	84003544	84005268	+	0	NA	Intergenic	Intergenic	299190	NM_005077	7088	Hs.689805	XM_005252151	ENSG00000196781	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
1820	chr10	25244922	25248757	+	0	NA	Intergenic	Intergenic	-5266	NM_001282786	56952	Hs.405619	XM_005252537	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
2110	chr13	99156860	99162509	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	14695	NM_003576	8428	Hs.508514	XM_005254077	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
1342	chr6	124856459	124857731	+	0	NA	intron (NM_153355, intron 3 of 5)	intron (NM_153355, intron 3 of 5)	-426596	NM_001286398	154214	Hs.656715	XM_005266832	ENSG00000146373	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
4359	chr21	44596124	44599557	+	0	NA	Intergenic	Intergenic	8699	NM_000394	1409	Hs.184085	XM_005261093	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
4185	chr2	64332452	64334549	+	0	NA	intron (NM_020651, intron 2 of 6)	intron (NM_020651, intron 2 of 6)	38105	NM_020651	57162	Hs.7886	XM_005264436	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
2457	chr2	39720635	39723988	+	0	NA	intron (NR_037875, intron 3 of 5)	intron (NR_037875, intron 3 of 5)	57754	NR_037875	728730	Hs.655344	XR_244956	ENSG00000231312	AC007246.3	-	uncharacterized LOC728730	ncRNA
1968	chr11	111792347	111797845	+	0	NA	intron (NR_037651, intron 3 of 4)	intron (NR_037651, intron 3 of 4)	-2772	NM_001278542	85458	Hs.655626	XM_005277726	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
1802	chr1	233808402	233811553	+	0	NA	Intergenic	Intergenic	50079	NR_039625	100616390		NR_039625		MIR4427	-	microRNA 4427	ncRNA
2775	chr3	100783399	100792592	+	0	NA	Intergenic	Intergenic	-75661	NM_015429	25890	Hs.477015	XM_005247281	ENSG00000154175	ABI3BP	NESHBP|TARSH	ABI family, member 3 (NESH) binding protein	protein-coding
4065	chr17	81036573	81039185	+	0	NA	intron (NM_001004431, intron 1 of 3)	CpG-11492	312	NM_001004431	284207	Hs.378821	XM_005256349	ENSG00000176845	METRNL	-	meteorin, glial cell differentiation regulator-like	protein-coding
4009	chr16	80060422	80062531	+	0	NA	Intergenic	Intergenic	232330	NR_104661	101928248	Hs.659802	XR_243479		LOC101928248	-	uncharacterized LOC101928248	ncRNA
2273	chr17	38436355	38443935	+	0	NA	Intergenic	Intergenic	-4001	NM_001254	990	Hs.405958	NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6	cell division cycle 6	protein-coding
3476	chr1	18806343	18808785	+	0	NA	exon (NM_152375, exon 1 of 1)	exon (NM_152375, exon 1 of 1)	140	NM_152375	127707	Hs.710799	XM_005245739	ENSG00000179023	KLHDC7A	RP11-422P22.2	kelch domain containing 7A	protein-coding
791	chr2	218254495	218259616	+	0	NA	intron (NR_026597, intron 8 of 12)	LTR37A|LTR|ERV1	364261	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
3330	chr9	100907399	100910001	+	0	NA	intron (NM_003389, intron 2 of 11)	intron (NM_003389, intron 2 of 11)	26474	NM_003389	7464	Hs.113094	NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin, actin binding protein, 2A	protein-coding
1355	chr6	136782692	136788867	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	2234	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
3640	chr10	5992641	5994062	+	0	NA	TTS (NM_002189)	TTS (NM_002189)	26223	NM_002189	3601	Hs.445124	NM_001243539	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor, alpha	protein-coding
2231	chr15	92078422	92082404	+	0	NA	Intergenic	Intergenic	73844	NR_110106	101926928	Hs.638788	XR_243232	ENSG00000258551	RP11-661P17.1	-	uncharacterized LOC101926928	ncRNA
3617	chr1	243687825	243689802	+	0	NA	intron (NM_005465, intron 11 of 12)	L1MEb|LINE|L1	179335	NR_039824	100616343		NR_039824		MIR4677	-	microRNA 4677	ncRNA
3231	chr7	29487870	29490888	+	0	NA	intron (NM_004067, intron 6 of 12)	intron (NM_004067, intron 6 of 12)	-30107	NM_001039936	1124	Hs.710429	XM_005249597	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
3095	chr6	7973222	7977182	+	0	NA	intron (NR_037616, intron 4 of 12)	intron (NR_037616, intron 4 of 12)	-11133	NR_027712	206426	Hs.676966	NR_027712		PIP5K1P1	-	phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1	pseudo
916	chr3	7423370	7426162	+	0	NA	intron (NM_000844, intron 4 of 9)	intron (NM_000844, intron 4 of 9)	521964	NM_000844	2917	Hs.660131	XM_005265095	ENSG00000196277	GRM7	GLUR7|GPRC1G|MGLU7|MGLUR7	glutamate receptor, metabotropic 7	protein-coding
2043	chr12	47581931	47585809	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	2275	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
3646	chr10	15126090	15127248	+	0	NA	intron (NM_001039844, intron 1 of 3)	MER51A|LTR|ERV1	4106	NM_001039844	414149	Hs.723069	XM_005252453		ACBD7	bA455B2.2	acyl-CoA binding domain containing 7	protein-coding
4857	chr7	50801020	50801627	+	0	NA	intron (NM_001001555, intron 2 of 16)	intron (NM_001001555, intron 2 of 16)	-1273	NM_005311	2887	Hs.164060	XM_005271760	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
4828	chr7	47443991	47448166	+	0	NA	intron (NM_022748, intron 13 of 30)	intron (NM_022748, intron 13 of 30)	175664	NM_022748	64759	Hs.520814	XM_005249823	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
329	chr12	7990344	7993691	+	0	NA	intron (NM_001286237, intron 1 of 9)	L2a|LINE|L2	33618	NM_153449	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
525	chr15	98140858	98142962	+	0	NA	Intergenic	Intergenic	275749	NR_024172	91948	Hs.130423	XR_243216	ENSG00000251209	LINC00923	-	long intergenic non-protein coding RNA 923	ncRNA
4476	chr3	112405033	112409645	+	0	NA	Intergenic	MIRb|SINE|MIR	-47349	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
27	chr1	12963264	12966191	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	-6633	NM_001039361	343071	Hs.715459	NM_001039361	ENSG00000187545	PRAMEF10	RP5-845O24.7	PRAME family member 10	protein-coding
787	chr2	217555002	217556535	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	4504	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
2331	chr18	12551146	12553948	+	0	NA	intron (NM_020148, intron 2 of 15)	LTR2|LTR|ERV1	104184	NM_001128627	56907	Hs.515283	XM_005258121	ENSG00000134278	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
1902	chr10	104780377	104783433	+	0	NA	intron (NM_199076, intron 1 of 6)	intron (NM_199076, intron 1 of 6)	103830	NM_199076	54805	Hs.643509	XM_005269933	ENSG00000148842	CNNM2	ACDP2	cyclin M2	protein-coding
1561	chrX	38739150	38740466	+	0	NA	Intergenic	Intergenic	79123	NM_001098790	58526	Hs.662789	XM_005272629	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
3909	chr14	92301913	92303954	+	0	NA	promoter-TSS (NM_001128595)	promoter-TSS (NM_001128595)	-63	NM_152332	123036	Hs.510262	XM_005267339	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|Tac2-N	tandem C2 domains, nuclear	protein-coding
1866	chr10	35367657	35369524	+	0	NA	intron (NM_001198777, intron 1 of 20)	Tigger7|DNA|TcMar-Tigger	-5332	NM_001198778	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
2001	chr12	47784378	47793193	+	0	NA	Intergenic	Intergenic	-178559	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
4394	chr22	37579071	37580376	+	0	NA	intron (NM_182486, intron 2 of 3)	intron (NM_182486, intron 2 of 3)	4607	NM_182486	114904	Hs.22011	XM_005261325	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
3736	chr11	71783021	71784500	+	0	NA	promoter-TSS (NR_036123)	promoter-TSS (NR_036123)	-412	NR_036123	100422953		NR_036123	ENSG00000263742	MIR3165	-	microRNA 3165	ncRNA
3731	chr11	45285875	45287312	+	0	NA	intron (NM_001247987, intron 2 of 7)	L1ME2z|LINE|L1	21291	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
3216	chr7	134047354	134055825	+	0	NA	Intergenic	L2c|LINE|L2	-49762	NM_032826	84912	Hs.490181	NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4	protein-coding
1310	chr6	75228342	75229633	+	0	NA	Intergenic	Intergenic	686636	NM_080645	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	collagen, type XII, alpha 1	protein-coding
3459	chr1	202079550	202084836	+	0	NA	Intergenic	Intergenic	-9836	NM_004767	9283	Hs.132049	NM_004767		GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
2115	chr13	110746325	110748437	+	0	NA	Intergenic	Intergenic	212115	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
4703	chr6	11201963	11225316	+	0	NA	exon (NM_006403, exon 2 of 7)	exon (NM_006403, exon 2 of 7)	19276	NM_182966	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
4357	chr20	61283239	61284736	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	10190	NM_016354	28231	Hs.235782	XM_005260203	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family, member 4A1	protein-coding
4578	chr4	146655305	146656614	+	0	NA	Intergenic	Intergenic	54603	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
4234	chr2	160494164	160494825	+	0	NA	Intergenic	L1M1|LINE|L1	-21435	NM_013450	29994	Hs.470369	XM_005246488	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain, 2B	protein-coding
3695	chr10	103697490	103700001	+	0	NA	intron (NM_024541, intron 23 of 25)	intron (NM_024541, intron 23 of 25)	-95068	NM_173193	30819	Hs.97044	XM_005269729	ENSG00000120049	KCNIP2	KCHIP2	Kv channel interacting protein 2	protein-coding
1239	chr6	136707903	136709527	+	0	NA	intron (NM_001198617, intron 3 of 15)	intron (NM_001198617, intron 3 of 15)	79298	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
4489	chr3	138315860	138317212	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-3311	NM_001288965	80321	Hs.531962	XM_005247802	ENSG00000114107	CEP70	BITE	centrosomal protein 70kDa	protein-coding
3035	chr5	167988212	167990196	+	0	NA	intron (NM_024594, intron 4 of 6)	intron (NM_024594, intron 4 of 6)	-1226	NR_029520	406895		NR_029520		MIR103A1	MIR103-1|MIRN103-1	microRNA 103a-1	ncRNA
769	chr2	175518641	175520099	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-20063	NM_003387	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
1181	chr5	103848188	103850143	+	0	NA	Intergenic	Intergenic	-586010	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
1809	chr1	240552865	240555764	+	0	NA	intron (NM_020066, intron 14 of 17)	intron (NM_020066, intron 14 of 17)	221148	NM_022469	64388	Hs.98206	XM_005273226	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
803	chr2	234515869	234518474	+	0	NA	Intergenic	L1ME4a|LINE|L1	-9120	NM_019076	54576	Hs.554822	XM_005246081	ENSG00000241635	UGT1A8	UDPGT|UDPGT 1-8|UGT-1H|UGT1-08|UGT1.8|UGT1A8S|UGT1H	UDP glucuronosyltransferase 1 family, polypeptide A8	protein-coding
2744	chr3	46731628	46735846	+	0	NA	intron (NR_033815, intron 1 of 25)	intron (NR_033815, intron 1 of 25)	1409	NM_001190707	259173	Hs.517937	XM_005265025	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
2559	chr2	225773914	225776576	+	0	NA	intron (NM_014689, intron 3 of 55)	MIR|SINE|MIR	100012	NR_039641	100616207		NR_039641		MIR4439	-	microRNA 4439	ncRNA
4796	chr6	116337049	116339710	+	0	NA	intron (NM_002031, intron 1 of 7)	MER57B1|LTR|ERV1	-21515	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
4133	chr2	128155364	128156675	+	0	NA	Intergenic	Intergenic	-19977	NM_000312	5624	Hs.224698	XM_005263715	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C (inactivator of coagulation factors Va and VIIIa)	protein-coding
3199	chr6	167040976	167042199	+	0	NA	promoter-TSS (NM_021135)	promoter-TSS (NM_021135)	-861	NM_021135	6196	Hs.655277	XM_005267092	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	ribosomal protein S6 kinase, 90kDa, polypeptide 2	protein-coding
4669	chr5	133575981	133577071	+	0	NA	Intergenic	Intergenic	-14576	NM_002715	5515	Hs.105818	NM_002715		PPP2CA	PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2, catalytic subunit, alpha isozyme	protein-coding
60	chr1	97848607	97851056	+	0	NA	intron (NM_000110, intron 14 of 22)	intron (NM_000110, intron 14 of 22)	288352	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	RP11-526F14.1	DPYD antisense RNA 1	ncRNA
1245	chr6	117275273	117277479	+	0	NA	Intergenic	Intergenic	78000	NM_173560	222546	Hs.352276	NM_173560	ENSG00000185002	RFX6	MTFS|RFXDC1|dJ955L16.1	regulatory factor X, 6	protein-coding
1400	chr7	30265034	30266589	+	0	NA	Intergenic	Intergenic	-58112	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
1067	chr4	41610457	41611827	+	0	NA	intron (NM_014988, intron 6 of 26)	intron (NM_014988, intron 6 of 26)	-3647	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
691	chr2	29503792	29505192	+	0	NA	intron (NM_004304, intron 9 of 28)	intron (NM_004304, intron 9 of 28)	166200	NM_024692	79745	Hs.122927	XM_005264561	ENSG00000115295	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
2615	chr20	9280945	9284001	+	0	NA	intron (NM_182797, intron 1 of 35)	intron (NM_182797, intron 1 of 35)	-5974	NM_000933	5332	Hs.472101	XM_005260722	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
1676	chr1	7460310	7466747	+	0	NA	intron (NM_015215, intron 5 of 22)	L2b|LINE|L2	-367801	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
1388	chr7	4704313	4706513	+	0	NA	Intergenic	L1MC5|LINE|L1	-16517	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
3134	chr6	47635978	47639500	+	0	NA	intron (NM_153839, intron 2 of 10)	intron (NM_153839, intron 2 of 10)	13413	NM_153839	222611	Hs.724860	XM_005248939	ENSG00000164393	GPR111	PGR20|hGPCR35	G protein-coupled receptor 111	protein-coding
346	chr12	20147434	20149584	+	0	NA	Intergenic	Intergenic	-19110	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
3085	chr6	3824722	3827545	+	0	NA	Intergenic	Intergenic	-23499	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
3171	chr6	126068648	126071824	+	0	NA	promoter-TSS (NM_012259)	promoter-TSS (NM_012259)	-496	NM_012259	23493	Hs.144287	XM_005266878	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes-related family bHLH transcription factor with YRPW motif 2	protein-coding
427	chr13	48245016	48248711	+	0	NA	Intergenic	Intergenic	328599	NM_003850	8803	Hs.743361	XM_005266579	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
4735	chr6	11315172	11319933	+	0	NA	intron (NR_073131, intron 1 of 9)	AluSx|SINE|Alu	65029	NM_001142393	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
82	chr1	149635734	149637233	+	0	NA	intron (NR_046138, intron 2 of 3)	intron (NR_046138, intron 2 of 3)	60030	NR_024510	728855	Hs.662922	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	ncRNA
3464	chr1	233749008	233750729	+	0	NA	5' UTR (NM_002245, exon 1 of 3)	5' UTR (NM_002245, exon 1 of 3)	118	NM_002245	3775	Hs.208544	NM_002245	ENSG00000135750	KCNK1	DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1	potassium channel, subfamily K, member 1	protein-coding
2202	chr15	64010365	64012154	+	0	NA	intron (NM_003922, intron 19 of 77)	L2a|LINE|L2	114888	NM_003922	8925	Hs.210385	XM_005254742	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
650	chr19	43630793	43632248	+	0	NA	Intergenic	L1MEc|LINE|L1	-44627	NM_031246	5670	Hs.709200	NM_031246	ENSG00000242221	PSG2	CEA|PSBG2|PSG1	pregnancy specific beta-1-glycoprotein 2	protein-coding
4635	chr5	82848915	82850340	+	0	NA	intron (NM_004385, intron 11 of 14)	MADE2|DNA|TcMar-Mariner	82134	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
1154	chr5	50521134	50522859	+	0	NA	Intergenic	Intergenic	-156962	NM_002202	3670	Hs.505	NM_002202	ENSG00000016082	ISL1	ISLET1|Isl-1	ISL LIM homeobox 1	protein-coding
895	chr22	28859914	28861731	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	4965	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA mir-5739	ncRNA
1763	chr1	200450562	200454050	+	0	NA	Intergenic	Intergenic	-73120	NM_012482	23528	Hs.735801	NM_001281293	ENSG00000162702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
4499	chr3	159385791	159387825	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	-170842	NM_001197109	29970	Hs.134665	XM_005247405	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
69	chr1	120560816	120563233	+	0	NA	intron (NM_024408, intron 2 of 33)	intron (NM_024408, intron 2 of 33)	50293	NM_001200001	4853	Hs.487360	XM_005270901	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
4299	chr20	509050	510491	+	0	NA	intron (NM_177559, intron 1 of 13)	AluJo|SINE|Alu	14712	NM_177560	1457	Hs.644056	NM_001895		CSNK2A1	CK2A1|CKII|CSNK2A3	casein kinase 2, alpha 1 polypeptide	protein-coding
1910	chr10	116614722	116617618	+	0	NA	intron (NM_001135051, intron 14 of 16)	intron (NM_001135051, intron 14 of 16)	34667	NM_020940	57700	Hs.192619	NM_001135051	ENSG00000151553	FAM160B1	KIAA1600|bA106M7.3	family with sequence similarity 160, member B1	protein-coding
2762	chr3	71306217	71308733	+	0	NA	intron (NM_001012505, intron 5 of 6)	L2c|LINE|L2	-13159	NM_001244814	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
3076	chr6	165984088	165990350	+	0	NA	intron (NM_001130690, intron 1 of 21)	intron (NM_001130690, intron 1 of 21)	88369	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
224	chr10	134345764	134347658	+	0	NA	Intergenic	Intergenic	-4642	NM_005539	3632	Hs.715308	XM_005252681	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase, 40kDa	protein-coding
3608	chr1	233808434	233810361	+	0	NA	Intergenic	Intergenic	49499	NR_039625	100616390		NR_039625		MIR4427	-	microRNA 4427	ncRNA
3402	chrX	8812424	8815460	+	0	NA	Intergenic	MIRb|SINE|MIR	-44518	NM_174951	171482	Hs.382062	NM_001171186	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9, member A	protein-coding
3264	chr7	100609127	100612650	+	0	NA	Intergenic	Intergenic	-2016	NM_001164462	10071	Hs.489355	NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
2711	chr3	50641679	50645249	+	0	NA	TTS (NM_013324)	TTS (NM_013324)	5798	NM_013324	1154	Hs.655334	XM_005264846	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2-containing protein	protein-coding
3501	chr1	59394475	59396190	+	0	NA	Intergenic	Intergenic	144509	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	RP4-794H19.2	long intergenic non-protein coding RNA 1135	ncRNA
1982	chr11	130035657	130037362	+	0	NA	intron (NM_021978, intron 1 of 18)	L3|LINE|CR1	6827	NM_021978	6768	Hs.504315	NM_021978	ENSG00000149418	ST14	HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding
2393	chr2	18478645	18483252	+	0	NA	Intergenic	Intergenic	261011	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
3423	chrX	66999605	67001482	+	0	NA	Intergenic	Intergenic	211860	NM_001011645	367	Hs.76704	XM_005262263	ENSG00000169083	AR	AIS|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM	androgen receptor	protein-coding
426	chr13	48219608	48221632	+	0	NA	Intergenic	Intergenic	354842	NM_003850	8803	Hs.743361	XM_005266579	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
4127	chr2	33700372	33702016	+	0	NA	promoter-TSS (NM_001139488)	promoter-TSS (NM_001139488)	-127	NM_001139488	25780	Hs.143674	XM_005264246	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
3222	chr7	371592	374242	+	0	NA	Intergenic	CpG	42781	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
1435	chr7	131632729	131634494	+	0	NA	Intergenic	Intergenic	-392235	NM_001018111	5420	Hs.744213	NM_001018111	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
279	chr11	95413103	95414682	+	0	NA	Intergenic	MIR3|SINE|MIR	109062	NM_144664	143684	Hs.288304	XM_005273775	ENSG00000077458	FAM76B	-	family with sequence similarity 76, member B	protein-coding
2408	chr2	55325856	55330339	+	0	NA	Intergenic	Intergenic	-50363	NM_153828	57142	Hs.637850	XM_005264434	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
483	chr14	92297038	92298803	+	0	NA	intron (NM_001128596, intron 1 of 11)	L1ME3E|LINE|L1	4950	NM_001128595	123036	Hs.510262	XM_005267339	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|Tac2-N	tandem C2 domains, nuclear	protein-coding
498	chr15	24571280	24572504	+	0	NA	Intergenic	Intergenic	-156839	NR_026647	791115	Hs.742600	XR_245828	ENSG00000260551	PWRN2	NCRNA00199	Prader-Willi region non-protein coding RNA 2	ncRNA
4145	chr2	19985156	19987354	+	0	NA	Intergenic	L2c|LINE|L2	-82360	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	AC013400.2	long intergenic non-protein coding RNA 954	ncRNA
3520	chr1	145232943	145234228	+	0	NA	intron (NM_203458, intron 1 of 4)	intron (NM_203458, intron 1 of 4)	24472	NM_203458	388677	Hs.728902	XM_005272954	ENSG00000213240	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
2055	chr12	57378556	57381540	+	0	NA	Intergenic	Intergenic	-8307	NM_007264	11318	Hs.483909	NM_007264	ENSG00000166856	GPR182	7TMR|ADMR|AM-R|AMR|G10D|gamrh|hrhAMR	G protein-coupled receptor 182	protein-coding
1487	chr8	129439706	129441554	+	0	NA	Intergenic	Intergenic	278268	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
4311	chr20	8112165	8113746	+	0	NA	promoter-TSS (NM_015192)	promoter-TSS (NM_015192)	43	NM_015192	23236	Hs.431173	XM_005260681	ENSG00000182621	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
4698	chr5	175223869	175225353	+	0	NA	intron (NM_006650, intron 1 of 4)	CpG	1001	NM_006650	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
2028	chr12	13127944	13130386	+	0	NA	intron (NM_015987, intron 3 of 3)	intron (NM_015987, intron 3 of 3)	-3606	NR_038920	100506314	Hs.659383	XR_242880	ENSG00000247498	RP11-392P7.6	-	uncharacterized LOC100506314	ncRNA
1540	chr9	109682350	109684914	+	0	NA	intron (NR_031752, intron 2 of 3)	intron (NR_031752, intron 2 of 3)	58254	NM_021224	58499	Hs.370379	XM_005252117	ENSG00000148143	ZNF462	Zfp462	zinc finger protein 462	protein-coding
3075	chr6	165963233	165971062	+	0	NA	intron (NM_001130690, intron 1 of 21)	intron (NM_001130690, intron 1 of 21)	108441	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
1606	chrX	135257754	135259365	+	0	NA	intron (NR_027621, intron 2 of 6)	intron (NR_027621, intron 2 of 6)	6763	NM_001167819	2273	Hs.435369	NM_001159699	ENSG00000022267	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
2064	chr12	74762348	74766171	+	0	NA	Intergenic	Intergenic	-77848	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
99	chr1	176486067	176487550	+	0	NA	intron (NM_020318, intron 1 of 22)	intron (NM_020318, intron 1 of 22)	54501	NM_021936	60676	Hs.187284	XM_005245422	ENSG00000116183	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
4767	chr6	37209599	37211805	+	0	NA	intron (NM_145316, intron 1 of 3)	MLT1L|LTR|ERVL-MaLR	14711	NM_145316	221468	Hs.520101	XM_005248907	ENSG00000172738	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
3553	chr1	183666908	183667776	+	0	NA	intron (NM_015149, intron 1 of 18)	MER63D|DNA|hAT-Blackjack	-44894	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
4892	chr7	137616966	137618816	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	-20203	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
1933	chr11	1575056	1577706	+	0	NA	3' UTR (NM_004420, exon 7 of 7)	3' UTR (NM_004420, exon 7 of 7)	16769	NM_004420	1850	Hs.41688	NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
2022	chr12	8769273	8773576	+	0	NA	Intergenic	L1MA9|LINE|L1	-5982	NM_020661	57379	Hs.149342	XM_005253432	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation-induced cytidine deaminase	protein-coding
790	chr2	218141704	218145742	+	0	NA	Intergenic	MamRep38|DNA|hAT	-418941	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
533	chr16	57684817	57689825	+	0	NA	intron (NM_201525, intron 4 of 13)	intron (NM_201525, intron 4 of 13)	14114	NM_001145774	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
4446	chr3	71558806	71561068	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	31303	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284	microRNA 1284	ncRNA
2080	chr12	115778323	115780288	+	0	NA	Intergenic	Intergenic	-657336	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
4448	chr3	87367008	87369233	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-42383	NM_001122757	5449	Hs.591654	NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
3551	chr1	180555610	180556443	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-45120	NM_001135669	9213	Hs.227656	NM_001135669	ENSG00000143324	XPR1	SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
1122	chr5	32276004	32278960	+	0	NA	intron (NM_001040446, intron 1 of 15)	intron (NM_001040446, intron 1 of 15)	35632	NM_001040446	54545	Hs.481836	XM_005248313	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
2416	chr2	135689501	135693725	+	0	NA	intron (NR_037649, intron 2 of 10)	intron (NR_037649, intron 2 of 10)	15221	NM_001241	905	Hs.744115	XM_005263830	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
4643	chr5	95138723	95140206	+	0	NA	Intergenic	Intergenic	19113	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
1053	chr4	41462994	41464353	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	100871	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
414	chr13	31392608	31394463	+	0	NA	Intergenic	L2a|LINE|L2	16192	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
462	chr14	59719923	59722211	+	0	NA	intron (NM_001270520, intron 1 of 24)	intron (NM_001270520, intron 1 of 24)	-9092	NM_014992	23002	Hs.19156	XM_005267430	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
3852	chr13	80297730	80299462	+	0	NA	Intergenic	Intergenic	-243230	NR_046685	100874208	Hs.602801	NR_046685	ENSG00000232132	NDFIP2-AS1	RP11-394M3.2	NDFIP2 antisense RNA 1	ncRNA
4558	chr4	88786308	88788210	+	0	NA	Intergenic	MER4A|LTR|ERV1	33138	NM_001184697	56955	Hs.676357	XM_005263141	ENSG00000152595	MEPE	OF45	matrix extracellular phosphoglycoprotein	protein-coding
263	chr11	37579403	37580798	+	0	NA	Intergenic	Intergenic	-960271	NM_001243786	5897	Hs.714519	NM_000536	ENSG00000175097	RAG2	RAG-2	recombination activating gene 2	protein-coding
3746	chr11	118493423	118494600	+	0	NA	intron (NM_001144758, intron 4 of 22)	intron (NM_001144758, intron 4 of 22)	15705	NM_001144758	23187	Hs.504062	XM_005271465	ENSG00000019144	PHLDB1	LL5A	pleckstrin homology-like domain, family B, member 1	protein-coding
4536	chr4	38163511	38165269	+	0	NA	Intergenic	LTR78|LTR|ERV1	42815	NM_001253915	23216	Hs.176503	XM_005262646	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
4385	chr22	27289302	27292055	+	0	NA	Intergenic	HAL1-3A_ME|LINE|L1	237232	NR_033320	440823	Hs.517502	NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2	myocardial infarction associated transcript (non-protein coding)	ncRNA
3361	chr9	85641149	85645090	+	0	NA	intron (NM_152573, intron 1 of 16)	intron (NM_152573, intron 1 of 16)	34924	NM_152573	158158	Hs.129136	XM_005251730	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
2985	chr5	82745865	82748598	+	0	NA	Intergenic	Intergenic	-20262	NM_001164097	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
3593	chr1	219444342	219446003	+	0	NA	Intergenic	Intergenic	97980	NM_138794	127018	Hs.657617	XM_005273046	ENSG00000143353	LYPLAL1	-	lysophospholipase-like 1	protein-coding
4979	chr9	118351907	118352390	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	154370	NR_109805	101928775	Hs.522362	XR_242668		LOC101928775	-	uncharacterized LOC101928775	ncRNA
3673	chr10	73715842	73717370	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-7514	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
3210	chr7	44675393	44681776	+	0	NA	intron (NM_001003941, intron 2 of 8)	intron (NM_001003941, intron 2 of 8)	32463	NM_002541	4967	Hs.488181	XM_005249759	ENSG00000105953	OGDH	AKGDH|E1k|OGDC	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding
1409	chr7	40957671	40959641	+	0	NA	Intergenic	L2c|LINE|L2	-774858	NR_027118	285954	Hs.656869	NR_027118	ENSG00000224116	INHBA-AS1	AC005027.4	INHBA antisense RNA 1	ncRNA
4417	chr3	27718441	27719998	+	0	NA	Intergenic	Intergenic	44987	NM_001278182	8320	Hs.734211	XM_005265509	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
4581	chr4	154110093	154110935	+	0	NA	intron (NM_001130067, intron 1 of 11)	intron (NM_001130067, intron 1 of 11)	-15084	NM_015271	23321	Hs.435711	XM_005262872	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
1716	chr1	113862579	113864943	+	0	NA	Intergenic	Intergenic	-69714	NM_001142782	260425	Hs.486189	XM_005270736	ENSG00000081026	MAGI3	MAGI-3|RP4-730K3.1|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
4219	chr2	118879942	118881870	+	0	NA	Intergenic	L3b|LINE|CR1	34856	NM_016133	51141	Hs.7089	XM_005263690	ENSG00000125629	INSIG2	-	insulin induced gene 2	protein-coding
293	chr11	112483035	112485486	+	0	NA	Intergenic	Intergenic	-57735	NR_104155	387810	Hs.512255	XR_246474	ENSG00000255484	RP11-65M17.1	-	uncharacterized LOC387810	ncRNA
1272	chr6	13480076	13482271	+	0	NA	intron (NM_001242629, intron 1 of 1)	intron (NM_001242629, intron 1 of 1)	5242	NM_001242628	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
1663	chr1	213085818	213090889	+	0	NA	Intergenic	Intergenic	-35534	NM_001136474	79805	Hs.96885	XM_005273268	ENSG00000143494	VASH2	RP11-275G3.1	vasohibin 2	protein-coding
3818	chr12	88190976	88191813	+	0	NA	Intergenic	L2a|LINE|L2	-12906	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
2888	chr4	95368330	95370953	+	0	NA	Intergenic	MIRb|SINE|MIR	-3367	NM_001011516	10611	Hs.732677	XM_005262693	ENSG00000163110	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
469	chr14	68998380	69001010	+	0	NA	intron (NM_133509, intron 10 of 10)	L1MEe|LINE|L1	260936	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
635	chr19	43727476	43730470	+	0	NA	intron (NR_033888, intron 4 of 8)	LTR8A|LTR|ERV1	-19047	NM_213633	5672	Hs.711363	XM_005259069	ENSG00000243137	PSG4	PSG9	pregnancy specific beta-1-glycoprotein 4	protein-coding
1088	chr4	90133781	90135454	+	0	NA	Intergenic	L2c|LINE|L2	94544	NM_198281	285513	Hs.605082	XM_005262936		GPRIN3	GRIN3	GPRIN family member 3	protein-coding
1566	chrX	43828449	43830393	+	0	NA	intron (NM_000266, intron 1 of 2)	intron (NM_000266, intron 1 of 2)	3500	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
979	chr3	143198310	143200280	+	0	NA	intron (NM_173653, intron 11 of 15)	intron (NM_173653, intron 11 of 15)	138207	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	RP13-635I23.2	SLC9A9 antisense RNA 1	ncRNA
3950	chr15	73920101	73922590	+	0	NA	intron (NM_012428, intron 1 of 8)	intron (NM_012428, intron 1 of 8)	4408	NM_012428	27020	Hs.744867	XM_005254304	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
3737	chr11	73576901	73578816	+	0	NA	Intergenic	Intergenic	-9886	NM_001267806	80227	Hs.525017	XM_005274308	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase-associated factor 1	protein-coding
709	chr2	48941899	48943589	+	0	NA	intron (NM_000233, intron 6 of 10)	LTR86A2|LTR|ERVL	40136	NM_000233	3973	Hs.468490	XM_005264309	ENSG00000138039	LHCGR	HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5	luteinizing hormone/choriogonadotropin receptor	protein-coding
3603	chr1	227063123	227064249	+	0	NA	intron (NM_000447, intron 3 of 12)	intron (NM_000447, intron 3 of 12)	5413	NM_000447	5664	Hs.25363	XM_005273198	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
40	chr1	33515216	33516979	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-13585	NR_037592	204	Hs.470907	XM_005270603	ENSG00000004455	AK2	ADK2|AK 2	adenylate kinase 2	protein-coding
310	chr12	96466050	96469218	+	0	NA	Intergenic	Intergenic	-30336	NM_001256644	4048	Hs.524648	XM_005268871	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
192	chr10	78743223	78744826	+	0	NA	intron (NM_001271518, intron 18 of 27)	AluSz|SINE|Alu	653553	NM_001271519	3778	Hs.144795	XM_005269773	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
1115	chr4	173910760	173912303	+	0	NA	intron (NM_001034845, intron 10 of 12)	HERV35I-int|LTR|ERV1	-178373	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
4421	chr3	36720205	36721890	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	60305	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
4406	chr3	190250960	190252588	+	0	NA	intron (NM_001167929, intron 1 of 10)	T-rich|Low_complexity|Low_complexity	19934	NM_001167931	3556	Hs.478673	XM_005247433	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
4320	chr20	13223731	13225237	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	-4150	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	RP5-1077I2.4	ISM1 antisense RNA 1	ncRNA
4262	chr2	234316004	234319206	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	20805	NM_003648	8527	Hs.471675	XM_005246107	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
3529	chr1	151970160	151973114	+	0	NA	Intergenic	Intergenic	-4923	NM_002966	6281	Hs.143873	NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
4303	chr20	2088928	2090886	+	0	NA	intron (NM_080836, intron 2 of 3)	intron (NM_080836, intron 2 of 3)	7379	NM_080836	140901	Hs.100057	NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
3764	chr12	80838401	80839906	+	0	NA	intron (NM_001145026, intron 2 of 41)	intron (NM_001145026, intron 2 of 41)	1027	NM_001145026	374462	Hs.539284	NM_001145026		PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type, Q	protein-coding
2293	chr17	20075044	20078782	+	0	NA	intron (NM_001033554, intron 1 of 5)	intron (NM_001033554, intron 1 of 5)	17606	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
1707	chr1	76079997	76082336	+	0	NA	Intergenic	Intergenic	-4367	NM_152697	204962	Hs.654821	XM_005270614	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44, member 5	protein-coding
3103	chr6	11809200	11811503	+	0	NA	Intergenic	Intergenic	-31071	NM_032744	84830	Hs.126409	XM_005249453	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
267	chr11	45292070	45295945	+	0	NA	intron (NM_001247987, intron 1 of 7)	intron (NM_001247987, intron 1 of 7)	13877	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
543	chr16	48333728	48335054	+	0	NA	intron (NM_031490, intron 10 of 14)	intron (NM_031490, intron 10 of 14)	-55205	NR_040677	100507577	Hs.744137	NR_040677	ENSG00000102910	LOC100507577	-	uncharacterized LOC100507577	ncRNA
1892	chr10	91132679	91135166	+	0	NA	Intergenic	Intergenic	-3891	NM_001010987	439996	Hs.500491	NM_001010987	ENSG00000204010	IFIT1B	IFIT1L|bA149I23.6	interferon-induced protein with tetratricopeptide repeats 1B	protein-coding
2044	chr12	48218435	48221405	+	0	NA	Intergenic	AluSx|SINE|Alu	-6157	NM_015401	51564	Hs.200063	XM_005268967	ENSG00000061273	HDAC7	HD7A|HDAC7A	histone deacetylase 7	protein-coding
4561	chr4	103798816	103800284	+	0	NA	intron (NM_001008388, intron 1 of 2)	AluSc|SINE|Alu	9415	NM_001008388	493856	Hs.745013	XM_005263040		CISD2	ERIS|Miner1|NAF-1|WFS2|ZCD2	CDGSH iron sulfur domain 2	protein-coding
4553	chr4	84771657	84773993	+	0	NA	Intergenic	Intergenic	315355	NM_032717	84803	Hs.99196	XM_005263314	ENSG00000138678	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
4231	chr2	151457678	151459221	+	0	NA	Intergenic	L5|LINE|RTE	-26962	NR_110246	101929282	Hs.126866	XR_241329		AC104777.4	-	uncharacterized LOC101929282	ncRNA
1437	chr7	133858824	133860564	+	0	NA	intron (NM_144648, intron 8 of 19)	intron (NM_144648, intron 8 of 19)	47589	NM_144648	136332	Hs.149774	NM_144648	ENSG00000155530	LRGUK	-	leucine-rich repeats and guanylate kinase domain containing	protein-coding
4648	chr5	95864473	95865911	+	0	NA	Intergenic	Intergenic	-96207	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
2813	chr3	157216173	157218995	+	0	NA	promoter-TSS (NM_024621)	promoter-TSS (NM_024621)	-139	NM_024621	79674	Hs.658046	XM_005247765	ENSG00000197415	VEPH1	MELT|VEPH	ventricular zone expressed PH domain-containing 1	protein-coding
2724	chr3	156250875	156256278	+	0	NA	intron (NM_003471, intron 13 of 13)	L2|LINE|L2	19397	NM_007107	6747	Hs.518346	XM_005247729	ENSG00000114850	SSR3	TRAPG	signal sequence receptor, gamma (translocon-associated protein gamma)	protein-coding
2517	chr2	133957442	133959750	+	0	NA	intron (NR_107007, intron 4 of 6)	MER44B|DNA|TcMar-Tigger	-65171	NR_110294	101928161	Hs.661917	XR_244858	ENSG00000226953	AC010890.1	-	uncharacterized LOC101928161	ncRNA
757	chr2	112289805	112292156	+	0	NA	Intergenic	Intergenic	-38288	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
2577	chr20	31322315	31326870	+	0	NA	intron (NM_053041, intron 1 of 8)	AluSx|SINE|Alu	7222	NM_001099339	149951	Hs.408427	XM_005260299	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
9	chr1	145454334	145457938	+	0	NA	TTS (NM_032305)	TTS (NM_032305)	14251	NM_032305	84265	Hs.591456	XM_005272976	ENSG00000121851	POLR3GL	RPC32HOM|flj32422	polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like	protein-coding
3359	chr9	80202243	80205533	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	59344	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	guanine nucleotide binding protein (G protein), alpha 14	protein-coding
1740	chr1	169553812	169556825	+	0	NA	intron (NM_000130, intron 1 of 24)	intron (NM_000130, intron 1 of 24)	451	NM_000130	2153	Hs.30054	NM_000130		F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V (proaccelerin, labile factor)	protein-coding
1600	chrX	117494003	117495755	+	0	NA	intron (NM_001184965, intron 1 of 19)	intron (NM_001184965, intron 1 of 19)	14843	NM_001184966	54521	Hs.98510	XM_005262426	ENSG00000131725	WDR44	RAB11BP|RPH11	WD repeat domain 44	protein-coding
603	chr18	10793319	10794753	+	0	NA	intron (NM_022068, intron 13 of 51)	intron (NM_022068, intron 13 of 51)	268163	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	N-ethylmaleimide-sensitive factor attachment protein, gamma	protein-coding
90	chr1	160964423	160967947	+	0	NA	3' UTR (NM_016946, exon 10 of 10)	3' UTR (NM_016946, exon 10 of 10)	24948	NM_016946	50848	Hs.517293	XM_005245227	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
4712	chr6	76234089	76235403	+	0	NA	Intergenic	Intergenic	-31250	NM_015687	27145	Hs.696158	XM_005248713	ENSG00000118407	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
3514	chr1	113849785	113851320	+	0	NA	Intergenic	Intergenic	-82923	NM_001142782	260425	Hs.486189	XM_005270736	ENSG00000081026	MAGI3	MAGI-3|RP4-730K3.1|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
565	chr17	9943916	9945350	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-4569	NM_201432	8522	Hs.462214	XM_005256831	ENSG00000007237	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
3102	chr6	11793891	11796252	+	0	NA	Intergenic	Intergenic	-15791	NM_032744	84830	Hs.126409	XM_005249453	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
3247	chr7	55034041	55036367	+	0	NA	Intergenic	Intergenic	-51521	NM_201282	1956	Hs.605083	XM_005271746	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
850	chr20	22698975	22700750	+	0	NA	Intergenic	Intergenic	-111707	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
4057	chr17	70334545	70335599	+	0	NA	Intergenic	Intergenic	217911	NM_000346	6662	Hs.647409	NM_000346	ENSG00000125398	SOX9	CMD1|CMPD1|SRA1	SRY (sex determining region Y)-box 9	protein-coding
4997	chrX	38420004	38421643	+	0	NA	promoter-TSS (NM_004615)	promoter-TSS (NM_004615)	92	NM_004615	7102	Hs.441664	XM_005272646	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b	tetraspanin 7	protein-coding
4683	chr5	154208280	154210431	+	0	NA	intron (NM_032385, intron 5 of 8)	intron (NM_032385, intron 5 of 8)	20858	NM_032385	10826	Hs.713175	XM_005268356	ENSG00000170271	FAXDC2	C5orf4	fatty acid hydroxylase domain containing 2	protein-coding
2696	chr22	27647475	27650308	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	548595	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
1360	chr6	136857281	136858637	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	-10111	NM_001198619	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
3620	chr10	28965477	28969436	+	0	NA	intron (NM_012342, intron 1 of 2)	intron (NM_012342, intron 1 of 2)	1032	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor	protein-coding
233	chr11	66534833	66537873	+	0	NA	intron (NR_048553, intron 2 of 14)	intron (NR_048553, intron 2 of 14)	24146	NM_024650	79703	Hs.292088	XM_005274285	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
1490	chr8	135882747	135884955	+	0	NA	Intergenic	FAM|SINE|Alu	-66663	NR_029599	407033		NR_029599	ENSG00000199153	MIR30D	MIRN30D	microRNA 30d	ncRNA
2198	chr15	59885631	59889206	+	0	NA	Intergenic	Intergenic	-16564	NM_004751	9245	Hs.194710	XM_005254785	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
2947	chr5	131697462	131718669	+	0	NA	intron (NM_003060, intron 1 of 9)	intron (NM_003060, intron 1 of 9)	-2457	NR_037898	553103	Hs.570908	NR_037898	ENSG00000233006	LOC553103	-	uncharacterized LOC553103	ncRNA
4199	chr2	76356950	76357853	+	0	NA	Intergenic	AluSq|SINE|Alu	-419290	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
4480	chr3	119895762	119897073	+	0	NA	intron (NM_001168271, intron 7 of 8)	intron (NM_001168271, intron 7 of 8)	66725	NM_001168271	165829	Hs.333358	XM_005247165	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
4105	chr19	31617752	31619284	+	0	NA	Intergenic	Intergenic	-22265	NR_026894	94023	Hs.220597	NR_026894		DKFZp566F0947	-	uncharacterized LOC94023	ncRNA
2288	chr17	9782618	9784835	+	0	NA	exon (NM_004246, exon 11 of 13)	exon (NM_004246, exon 11 of 13)	24958	NM_002903	5957	Hs.80539	NM_002903		RCVRN	RCV1	recoverin	protein-coding
4777	chr6	47637416	47638415	+	0	NA	intron (NM_153839, intron 2 of 10)	intron (NM_153839, intron 2 of 10)	13589	NM_153839	222611	Hs.724860	XM_005248939	ENSG00000164393	GPR111	PGR20|hGPCR35	G protein-coupled receptor 111	protein-coding
2954	chr5	169947197	169951396	+	0	NA	intron (NM_001278339, intron 1 of 7)	MamRep605|Unknown|Unknown	18256	NM_001278340	30820	Hs.484111	NM_001034837	ENSG00000182132	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
11	chr1	186545489	186548460	+	0	NA	Intergenic	Intergenic	-100319	NR_031642	100302192		NR_031642		MIR548F1	MIR548F-1|MIRN548F1|hsa-mir-548f-1	microRNA 548f-1	ncRNA
4841	chr7	23371959	23375742	+	0	NA	intron (NM_006547, intron 10 of 14)	AluSz|SINE|Alu	34910	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
4117	chr19	43768400	43771700	+	0	NA	intron (NM_002784, intron 2 of 5)	intron (NM_002784, intron 2 of 5)	3632	NM_002784	5678	Hs.502092	XM_005259074	ENSG00000183668	PSG9	PS34|PSBG-11|PSBG-9|PSG11|PSGII	pregnancy specific beta-1-glycoprotein 9	protein-coding
842	chr20	17822862	17825089	+	0	NA	Intergenic	Intergenic	119614	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
4288	chr20	14597363	14598741	+	0	NA	intron (NR_104193, intron 1 of 4)	intron (NR_104193, intron 1 of 4)	63022	NR_104193	140848	Hs.570367	NR_104193		MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1 (non-protein coding)	ncRNA
2000	chr12	47769060	47780078	+	0	NA	Intergenic	Intergenic	-164343	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
3340	chr9	2804797	2812094	+	0	NA	intron (NM_014878, intron 16 of 17)	intron (NM_014878, intron 16 of 17)	35685	NM_014878	9933	Hs.493309	XM_005251635	ENSG00000080608	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
2531	chr2	160493181	160496094	+	0	NA	Intergenic	L1M1|LINE|L1	-21578	NM_013450	29994	Hs.470369	XM_005246488	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain, 2B	protein-coding
199	chr10	87039219	87040646	+	0	NA	Intergenic	L1PA7|LINE|L1	-297556	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
4972	chr9	104076914	104079225	+	0	NA	intron (NM_017753, intron 6 of 7)	intron (NM_017753, intron 6 of 7)	67732	NM_001127610	570	Hs.284712	NM_001127610	ENSG00000136881	BAAT	BACAT|BAT	bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)	protein-coding
2410	chr2	85031824	85035861	+	0	NA	intron (NM_001370, intron 71 of 76)	intron (NM_001370, intron 71 of 76)	74527	NM_001080824	129293	Hs.469134	XM_005264129	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
1899	chr10	97883409	97885509	+	0	NA	Intergenic	L1M4c|LINE|L1	-5013	NM_014803	9849	Hs.651650	NM_001278524		ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
4606	chr5	5177751	5179282	+	0	NA	intron (NM_139056, intron 3 of 22)	intron (NM_139056, intron 3 of 22)	38073	NM_139056	170690	Hs.661915	NM_139056	ENSG00000145536	ADAMTS16	ADAMTS16s	ADAM metallopeptidase with thrombospondin type 1 motif, 16	protein-coding
1929	chr11	74015892	74023435	+	0	NA	intron (NR_110031, intron 1 of 11)	intron (NR_110031, intron 1 of 11)	3058	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
1737	chr1	168677477	168680274	+	0	NA	intron (NM_001937, intron 2 of 3)	intron (NM_001937, intron 2 of 3)	19567	NM_001937	1805	Hs.80552	NM_001937	ENSG00000143196	DPT	TRAMP	dermatopontin	protein-coding
4814	chr6	147310691	147314070	+	0	NA	intron (NR_034115, intron 6 of 10)	intron (NR_034115, intron 6 of 10)	-187420	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
3143	chr6	75981236	75986032	+	0	NA	intron (NM_018247, intron 1 of 6)	L2c|LINE|L2	10998	NM_018247	55754	Hs.108530	NM_001143958	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
3411	chrX	117669723	117672265	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	41122	NM_144658	139818	Hs.368203	XM_005262368	ENSG00000147251	DOCK11	ACG|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
3284	chr7	134843480	134847378	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	8797	NM_001243753	78996	Hs.744954	XM_005250576	ENSG00000122783	C7orf49	MRI	chromosome 7 open reading frame 49	protein-coding
3223	chr7	1016315	1018347	+	0	NA	Intergenic	Intergenic	-2096	NM_001031617	90639	Hs.121593	NM_001031617		COX19	-	cytochrome c oxidase assembly homolog 19 (S. cerevisiae)	protein-coding
3244	chr7	44672598	44675113	+	0	NA	intron (NM_001003941, intron 2 of 8)	MLT1H2|LTR|ERVL-MaLR	27734	NM_002541	4967	Hs.488181	XM_005249759	ENSG00000105953	OGDH	AKGDH|E1k|OGDC	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding
2122	chr14	70366015	70369428	+	0	NA	intron (NM_001034852, intron 1 of 11)	intron (NM_001034852, intron 1 of 11)	21607	NM_022137	64093	Hs.497349	XM_005267995	ENSG00000198732	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding
2280	chr17	77823188	77827499	+	0	NA	Intergenic	L2a|LINE|L2	-12130	NM_003655	8535	Hs.405046	XM_005257753	ENSG00000141582	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
280	chr11	96046794	96048533	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-26939	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	-	microRNA 1260b	ncRNA
273	chr11	83421142	83425666	+	0	NA	intron (NM_001206769, intron 12 of 21)	AluSx|SINE|Alu	-29936	NM_001142702	1740	Hs.367656	XM_005273805	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs, large homolog 2 (Drosophila)	protein-coding
471	chr14	70120147	70122034	+	0	NA	intron (NM_014734, intron 1 of 5)	L2b|LINE|L2	42780	NM_014734	9766	Hs.440025	XM_005268241	ENSG00000100647	KIAA0247	-	KIAA0247	protein-coding
3498	chr1	47654979	47659291	+	0	NA	Intergenic	Intergenic	-1364	NM_005764	10158	Hs.431099	NM_005764	ENSG00000162366	PDZK1IP1	DD96|MAP17|RP1-18D14.5|SPAP	PDZK1 interacting protein 1	protein-coding
4991	chr9	133655384	133657560	+	0	NA	intron (NM_007313, intron 1 of 10)	intron (NM_007313, intron 1 of 10)	-54359	NM_005157	25	Hs.431048	XM_005272177	ENSG00000097007	ABL1	ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding
4177	chr2	56006193	56008470	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-86286	NM_033109	87178	Hs.388733	XM_005264629	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
2262	chr16	77321658	77325317	+	0	NA	intron (NM_199355, intron 21 of 22)	intron (NM_199355, intron 21 of 22)	90138	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
1509	chr9	6271893	6273201	+	0	NA	Intergenic	Intergenic	-55802	NM_001001874	89882	Hs.351815	NM_001001874	ENSG00000170777	TPD52L3	NYDSP25|hD55	tumor protein D52-like 3	protein-coding
1936	chr11	11834000	11836960	+	0	NA	Intergenic	Intergenic	-27490	NM_001282659	55031	Hs.577256	XM_005252997	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
2912	chr4	157692072	157693716	+	0	NA	intron (NR_036641, intron 5 of 6)	intron (NR_036641, intron 5 of 6)	199652	NM_016205	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
1325	chr6	85895824	85898173	+	0	NA	Intergenic	L1PBa1|LINE|L1	-262304	NM_001204813	4907	Hs.153952	NM_001204813	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
1643	chr1	168768351	168771707	+	0	NA	Intergenic	Intergenic	13850	NR_024160	79100	Hs.250624	NR_024160	ENSG00000225826	LINC00626	RP1-10C16.2	long intergenic non-protein coding RNA 626	ncRNA
131	chr1	215730411	215732254	+	0	NA	Intergenic	L1ME1|LINE|L1	-9403	NM_016121	51133	Hs.335139	XM_005273156	ENSG00000136636	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
1565	chrX	43085058	43086379	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-428437	NM_000240	4128	Hs.183109	NM_000240		MAOA	MAO-A	monoamine oxidase A	protein-coding
4277	chr2	241194828	241196452	+	0	NA	Intergenic	Intergenic	-115567	NM_148961	150677	Hs.148586	NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
4075	chr18	29092046	29094286	+	0	NA	intron (NM_001943, intron 1 of 14)	MLT1L|LTR|ERVL-MaLR	15139	NM_001943	1829	Hs.412597	NM_001943	ENSG00000046604	DSG2	ARVC10|ARVD10|CDHF5|CMD1BB|HDGC	desmoglein 2	protein-coding
1502	chr9	121404573	121406917	+	0	NA	Intergenic	Intergenic	725994	NM_014618	1620	Hs.532316	XM_005251758	ENSG00000078725	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
1872	chr10	61730524	61732901	+	0	NA	Intergenic	L2a|LINE|L2	-11041	NR_024340	283025	Hs.522955	XR_246084	ENSG00000235931	C10orf40	-	chromosome 10 open reading frame 40	ncRNA
4743	chr6	13406800	13409071	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	434	NM_001242630	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
4665	chr5	131675135	131676096	+	0	NA	intron (NM_003059, intron 8 of 9)	intron (NM_003059, intron 8 of 9)	25676	NR_037500	100500865		NR_037500	ENSG00000263597	MIR3936	-	microRNA 3936	ncRNA
3488	chr1	41409562	41411397	+	0	NA	Intergenic	Intergenic	-34528	NM_001905	1503	Hs.473087	XM_005270535	ENSG00000171793	CTPS1	CTPS	CTP synthase 1	protein-coding
2935	chr5	82766260	82775937	+	0	NA	intron (NM_004385, intron 1 of 14)	intron (NM_004385, intron 1 of 14)	3605	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
4270	chr2	234652464	234656580	+	0	NA	intron (NM_019093, intron 1 of 4)	intron (NM_019093, intron 1 of 4)	-1861	NM_001001394	414061	Hs.725533	NM_001001394		DNAJB3	HCG3	DnaJ (Hsp40) homolog, subfamily B, member 3	protein-coding
3875	chr14	68992943	68994110	+	0	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	267105	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
2513	chr2	118560837	118562362	+	0	NA	Intergenic	L1PA3|LINE|L1	-10656	NM_006773	8886	Hs.744922	NM_006773	ENSG00000088205	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
37	chr1	25096028	25097986	+	0	NA	intron (NM_013943, intron 1 of 5)	intron (NM_013943, intron 1 of 5)	25247	NM_013943	25932	Hs.440544	XM_005245838	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
855	chr20	34316347	34319882	+	0	NA	intron (NR_040722, intron 5 of 17)	intron (NR_040722, intron 5 of 17)	12144	NM_001242599	9584	Hs.282901	NM_001242599	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
3659	chr10	35368501	35369119	+	0	NA	intron (NM_001198777, intron 1 of 20)	Tigger7|DNA|TcMar-Tigger	-5552	NM_001198778	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
1706	chr1	72747333	72751595	+	0	NA	Intergenic	CpG	-1187	NM_173808	257194	Hs.146542	XM_005270723		NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
1839	chr10	93386074	93394400	+	0	NA	exon (NM_005398, exon 2 of 2)	exon (NM_005398, exon 2 of 2)	2621	NM_005398	5507	Hs.744999	NM_005398	ENSG00000119938	PPP1R3C	PPP1R5	protein phosphatase 1, regulatory subunit 3C	protein-coding
1788	chr1	219482031	219488149	+	0	NA	Intergenic	Intergenic	137898	NM_138794	127018	Hs.657617	XM_005273046	ENSG00000143353	LYPLAL1	-	lysophospholipase-like 1	protein-coding
2186	chr15	38855667	38857749	+	0	NA	intron (NM_005739, intron 1 of 16)	CpG	299	NM_005739	10125	Hs.591127	XM_005254113	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
680	chr2	6342334	6344605	+	0	NA	Intergenic	Intergenic	172085	NR_110251	101929390	Hs.434407	XR_241258	ENSG00000227007	AC105253.1	-	uncharacterized LOC101929390	ncRNA
3962	chr15	88781941	88782675	+	0	NA	intron (NM_001007156, intron 3 of 15)	intron (NM_001007156, intron 3 of 15)	-13653	NR_038229	283738	Hs.578429	NR_038229	ENSG00000260305	NTRK3-AS1	RP11-356B18.2	NTRK3 antisense RNA 1	ncRNA
1147	chr5	20678582	20679631	+	0	NA	Intergenic	Intergenic	-690753	NM_001167667	1016	Hs.317632	XM_005248228	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
2783	chr3	108878512	108882369	+	0	NA	Intergenic	MER94|DNA|hAT-Blackjack	-16572	NR_026767	677779	Hs.618669	NM_001040054	ENSG00000214381	LINC00488	C3orf66	long intergenic non-protein coding RNA 488	ncRNA
334	chr12	12959832	12962379	+	0	NA	Intergenic	Intergenic	-5175	NM_016355	51202	Hs.719938	NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding
4870	chr7	98927626	98929073	+	0	NA	intron (NM_001190996, intron 1 of 9)	intron (NM_001190996, intron 1 of 9)	4853	NM_006409	10552	Hs.124126	NM_001190996	ENSG00000241685	ARPC1A	Arc40|HEL-68|SOP2Hs|SOP2L	actin related protein 2/3 complex, subunit 1A, 41kDa	protein-coding
3902	chr14	77779654	77783577	+	0	NA	intron (NM_013382, intron 1 of 20)	intron (NM_013382, intron 1 of 20)	5610	NM_013382	29954	Hs.132989	NM_013382	ENSG00000009830	POMT2	LGMD2N|MDDGA2|MDDGB2|MDDGC2	protein-O-mannosyltransferase 2	protein-coding
2292	chr17	17437542	17444057	+	0	NA	intron (NM_001267551, intron 2 of 6)	intron (NM_001267551, intron 2 of 6)	39980	NM_148173	10400	Hs.714193	XM_005256409	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
3582	chr1	208356597	208357843	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	60445	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
1997	chr12	20519042	20538268	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	6476	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
4675	chr5	140418972	140420915	+	0	NA	Intergenic	Intergenic	-11018	NM_013340	29930	Hs.278950	NM_013340	ENSG00000171815	PCDHB1	PCDH-BETA1	protocadherin beta 1	protein-coding
1680	chr1	20536684	20540143	+	0	NA	Intergenic	Intergenic	-25434	NR_110078	101928017	Hs.550803	XR_241222		UBXN10-AS1	-	UBXN10 antisense RNA 1	ncRNA
2879	chr4	82391969	82393929	+	0	NA	5' UTR (NM_152545, exon 1 of 14)	5' UTR (NM_152545, exon 1 of 14)	112	NM_152545	153020	Hs.591696	XM_005262776	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
1139	chr5	5014396	5016158	+	0	NA	Intergenic	Intergenic	-19195	NR_026994	340094	Hs.665092	NR_026994	ENSG00000215231	LINC01020	-	long intergenic non-protein coding RNA 1020	ncRNA
1319	chr6	80872763	80874352	+	0	NA	intron (NM_183050, intron 3 of 9)	L2a|LINE|L2	57213	NM_183050	594	Hs.654441	XM_005248756	ENSG00000083123	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
4043	chr17	55594190	55597234	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	226978	NM_001282544	101927581	Hs.540784	XM_005257905	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
1826	chr10	63386700	63390473	+	0	NA	Intergenic	Intergenic	-34133	NM_173554	219621	Hs.673160	XM_005269598	ENSG00000183346	C10orf107	bA63A2.1	chromosome 10 open reading frame 107	protein-coding
2454	chr2	36803806	36807629	+	0	NA	intron (NM_001042548, intron 5 of 8)	intron (NM_001042548, intron 5 of 8)	19615	NM_001042548	9637	Hs.258563	XR_244972	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding
2077	chr12	106735242	106739008	+	0	NA	intron (NM_152772, intron 9 of 9)	intron (NM_152772, intron 9 of 9)	-14311	NM_018082	55703	Hs.610795	NM_001160708	ENSG00000013503	POLR3B	C128|HLD8|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding
2036	chr12	19893362	19901273	+	0	NA	Intergenic	Intergenic	-270302	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
1747	chr1	180553868	180557027	+	0	NA	Intergenic	Intergenic	-45699	NM_001135669	9213	Hs.227656	NM_001135669	ENSG00000143324	XPR1	SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
820	chr20	1805000	1812014	+	0	NA	Intergenic	MIRb|SINE|MIR	-48115	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
1799	chr1	228984207	228988375	+	0	NA	Intergenic	LTR2|LTR|ERV1	115467	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
1552	chrX	76234052	76235319	+	0	NA	Intergenic	Intergenic	-94900	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
1194	chr5	124125318	124127364	+	0	NA	Intergenic	Intergenic	-45536	NM_020747	57507	Hs.266616	XM_005272037	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
3716	chr11	13894541	13895536	+	0	NA	Intergenic	Intergenic	-89146	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
4433	chr3	52483338	52485169	+	0	NA	TTS (NM_003280)	TTS (NM_003280)	3804	NM_003280	7134	Hs.118845	NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C type 1 (slow)	protein-coding
41	chr1	44501033	44502608	+	0	NA	Intergenic	Intergenic	-4656	NM_001024845	6536	Hs.442590	XM_005271145	ENSG00000196517	SLC6A9	GLYT1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding
3014	chr5	133076665	133081369	+	0	NA	Intergenic	Intergenic	-130794	NM_015082	23105	Hs.483390	NM_015082	ENSG00000053108	FSTL4	-	follistatin-like 4	protein-coding
3084	chr6	3803339	3805422	+	0	NA	Intergenic	MER34C_|LTR|ERV1	-45252	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
2887	chr4	91048352	91050435	+	0	NA	intron (NM_001145065, intron 1 of 10)	CpG	709	NM_001145065	401145	Hs.654735	NM_001145065	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
1453	chr8	107591066	107594356	+	0	NA	intron (NM_001198533, intron 3 of 16)	L1MB2|LINE|L1	-77325	NM_181354	55074	Hs.701892	XM_005250993	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
866	chr20	56335606	56338150	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-50286	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
2223	chr15	89443070	89444395	+	0	NA	intron (NM_005928, intron 6 of 7)	intron (NM_005928, intron 6 of 7)	-4962	NM_178232	145864	Hs.447530	XM_005254871	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
3532	chr1	153462968	153463711	+	0	NA	Intergenic	MIR3|SINE|MIR	-30202	NM_002963	6278	Hs.112408	XM_005245431	ENSG00000143556	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
770	chr2	176464239	176466167	+	0	NA	Intergenic	Intergenic	401815	NM_030650	80856	Hs.209561	XM_005246876		KIAA1715	LNP|Ul|ulnaless	KIAA1715	protein-coding
3380	chr9	112236380	112241049	+	0	NA	intron (NM_002829, intron 1 of 25)	intron (NM_002829, intron 1 of 25)	21879	NM_002829	5774	Hs.436429	NM_001145368	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
4292	chr20	24985307	24986812	+	0	NA	TTS (NM_001252676)	TTS (NM_001252676)	-12634	NM_020531	57136	Hs.472330	XM_005260763	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
1097	chr4	143394517	143398000	+	0	NA	intron (NM_003866, intron 2 of 26)	L1PA14|LINE|L1	371346	NM_003866	8821	Hs.531403	XM_005263322	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
641	chr19	29545600	29547075	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	52875	NR_040036	100505835	Hs.176539	NR_040036	ENSG00000267014	LOC100505835	-	uncharacterized LOC100505835	ncRNA
4734	chr6	11296711	11298284	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-64582	NM_001271033	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
838	chr20	16396802	16398433	+	0	NA	intron (NM_001199865, intron 15 of 24)	L1MD2|LINE|L1	156462	NM_024704	55614	Hs.101774	XM_005260750	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
2962	chr5	16811374	16814465	+	0	NA	intron (NM_012334, intron 3 of 40)	intron (NM_012334, intron 3 of 40)	123466	NM_012334	4651	Hs.481720	XM_005248306	ENSG00000145555	MYO10	-	myosin X	protein-coding
2664	chr21	35753177	35759342	+	0	NA	intron (NM_058182, intron 2 of 3)	intron (NM_058182, intron 2 of 3)	8510	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
616	chr18	45659148	45660704	+	0	NA	intron (NM_001039360, intron 1 of 2)	intron (NM_001039360, intron 1 of 2)	3754	NM_001039360	201501	Hs.732162	XM_005258225	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
5019	chrX	130964057	130965704	+	0	NA	promoter-TSS (NR_026975)	promoter-TSS (NR_026975)	-209	NR_026975	286467	Hs.720385	NR_026975	ENSG00000213468	RP11-453F18__B.1	-	uncharacterized LOC286467	ncRNA
1121	chr4	190200157	190201429	+	0	NA	Intergenic	Intergenic	-661181	NM_004477	2483	Hs.203772	XM_005262879	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
870	chr21	16071769	16073258	+	0	NA	Intergenic	Intergenic	-57085	NM_001256579	388813	Hs.334177	NM_001256579		LOC388813	-	uncharacterized protein ENSP00000383407-like	protein-coding
4245	chr2	189187172	189188887	+	0	NA	intron (NR_045563, intron 2 of 12)	intron (NR_045563, intron 2 of 12)	25810	NR_030287	693146		NR_030287	ENSG00000207951	MIR561	MIRN561|hsa-mir-561	microRNA 561	ncRNA
896	chr22	32953549	32955821	+	0	NA	intron (NM_003490, intron 6 of 12)	intron (NM_003490, intron 6 of 12)	83461	NM_001033024	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
3530	chr1	152079687	152081762	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	7206	NM_007113	7062	Hs.432416	XM_005245468	ENSG00000159450	TCHH	THH|THL|TRHY	trichohyalin	protein-coding
3672	chr10	73686539	73689758	+	0	NA	Intergenic	AluJb|SINE|Alu	-35972	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
2903	chr4	140976126	140983572	+	0	NA	intron (NM_018717, intron 1 of 5)	L1ME4a|LINE|L1	95384	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
4934	chr9	136920336	136922285	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	11831	NM_007371	8019	Hs.654869	XM_005272214	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
2165	chr15	33140453	33150919	+	0	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-134620	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
2347	chr18	46114226	46118824	+	0	NA	intron (NM_001142397, intron 2 of 12)	intron (NM_001142397, intron 2 of 12)	51098	NM_001142397	9811	Hs.145230	XM_005258392	ENSG00000134030	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
4310	chr20	6972334	6977017	+	0	NA	Intergenic	Intergenic	225930	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
777	chr2	201541814	201544928	+	0	NA	Intergenic	Intergenic	-17075	NR_001557	344454	Hs.148269	NR_001557		AOX2P	AOH2|AOX2	aldehyde oxidase 2 pseudogene	pseudo
3609	chr1	233842565	233844183	+	0	NA	Intergenic	Intergenic	83476	NR_039625	100616390		NR_039625		MIR4427	-	microRNA 4427	ncRNA
2786	chr3	109403415	109405225	+	0	NA	Intergenic	LTR25|LTR|ERV1	275483	NM_001145553	401082	Hs.477089	NM_001145553		FLJ25363	RP11-702L6.4	uncharacterized LOC401082	ncRNA
3968	chr15	91111543	91116284	+	0	NA	intron (NM_001042574, intron 2 of 14)	AluSq10|SINE|Alu	40795	NM_022769	64784	Hs.567572	XM_005254968	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
1672	chr1	1825155	1827400	+	0	NA	Intergenic	Intergenic	-3721	NM_002074	2782	Hs.721030	XM_005244741	ENSG00000078369	GNB1	-	guanine nucleotide binding protein (G protein), beta polypeptide 1	protein-coding
2325	chr18	6728558	6730768	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-104769	NM_001010000	79822	Hs.183114	XM_005258144	ENSG00000088756	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
1685	chr1	28742640	28745652	+	0	NA	intron (NM_001048183, intron 2 of 13)	MER44B|DNA|TcMar-Tigger	-20515	NM_023923	65979	Hs.225641	XM_005245970	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
1891	chr10	91105406	91107332	+	0	NA	Intergenic	Intergenic	14130	NM_001031683	3437	Hs.744072	NM_001031683	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G	interferon-induced protein with tetratricopeptide repeats 3	protein-coding
4924	chr9	2620795	2624440	+	0	NA	promoter-TSS (NR_015375)	promoter-TSS (NR_015375)	-244	NR_015375	401491	Hs.416043	NR_015375	ENSG00000236404	FLJ35024	RP11-125B21.2	uncharacterized LOC401491	ncRNA
3941	chr15	63305211	63306222	+	0	NA	Intergenic	Intergenic	-29122	NM_001018006	7168	Hs.602995	XM_005254636	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
2768	chr3	93877509	93879128	+	0	NA	Intergenic	Intergenic	-96251	NM_001195643	200895	Hs.718516	XM_005247204	ENSG00000178700	DHFRL1	DHFRP4	dihydrofolate reductase-like 1	protein-coding
562	chr16	79632515	79636648	+	0	NA	promoter-TSS (NM_005360)	promoter-TSS (NM_005360)	41	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
2269	chr17	28702504	28704973	+	0	NA	Intergenic	Intergenic	-2204	NM_001304	1362	Hs.446079	NM_001199775	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
1102	chr4	149708426	149710387	+	0	NA	Intergenic	Intergenic	-345734	NM_001166104	4306	Hs.163924	XM_005263014	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
183	chr10	64023901	64026036	+	0	NA	intron (NM_145307, intron 1 of 11)	intron (NM_145307, intron 1 of 11)	3654	NM_001282941	219790	Hs.58559	XM_005269610	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
2544	chr2	201199566	201204344	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	28282	NM_001282744	26010	Hs.120323	XM_005246454	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
1478	chr8	110600929	110602649	+	0	NA	intron (NM_001099756, intron 2 of 5)	intron (NM_001099756, intron 2 of 5)	48934	NM_001278938	9166	Hs.632960	XM_005251097	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated, antigen, 9	protein-coding
2541	chr2	189186369	189189339	+	0	NA	intron (NR_045563, intron 2 of 12)	intron (NR_045563, intron 2 of 12)	25635	NR_030287	693146		NR_030287	ENSG00000207951	MIR561	MIRN561|hsa-mir-561	microRNA 561	ncRNA
439	chr14	70123320	70126044	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	46372	NM_014734	9766	Hs.440025	XM_005268241	ENSG00000100647	KIAA0247	-	KIAA0247	protein-coding
362	chr12	69500979	69502825	+	0	NA	Intergenic	Intergenic	-131415	NM_007007	11052	Hs.369606	XM_005268588	ENSG00000111605	CPSF6	CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6, 68kDa	protein-coding
1379	chr6	167090712	167092710	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-50985	NM_021135	6196	Hs.655277	XM_005267092	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	ribosomal protein S6 kinase, 90kDa, polypeptide 2	protein-coding
2607	chr20	3462929	3465560	+	0	NA	intron (NM_139321, intron 1 of 28)	AluJb|SINE|Alu	12579	NM_001207047	8455	Hs.276252	XM_005260860	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
3345	chr9	33169857	33173527	+	0	NA	intron (NR_108108, intron 1 of 3)	AluJr4|SINE|Alu	3835	NR_108108	101929639	Hs.545818	XR_242540		RP11-326F20.5	-	uncharacterized LOC101929639	ncRNA
4598	chr5	90193391	90195964	+	0	NA	intron (NR_003149, intron 83 of 89)	AluJr|SINE|Alu	340060	NR_003149	84059	Hs.591777	XM_005248613	ENSG00000164199	GPR98	FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b	G protein-coupled receptor 98	protein-coding
4839	chr7	7603512	7604823	+	0	NA	intron (NR_110084, intron 1 of 4)	L2a|LINE|L2	1529	NR_110084	101927391	Hs.738913	XR_242127		RP5-1159O4.2	RP5-1159O4.1	uncharacterized LOC101927391	ncRNA
3798	chr12	52728838	52731518	+	0	NA	Intergenic	AluSx|SINE|Alu	-14996	NM_002282	3889	Hs.720768	XM_003846559	ENSG00000170523	KRT83	HB3|Hb-3|KRTHB3	keratin 83	protein-coding
2496	chr2	97378751	97383153	+	0	NA	intron (NR_024518, intron 3 of 7)	AluSg|SINE|Alu	24861	NR_024521	81562	Hs.655743	NM_001142292	ENSG00000114988	LMAN2L	VIPL	lectin, mannose-binding 2-like	protein-coding
407	chr13	110525162	110529224	+	0	NA	Intergenic	Intergenic	-88279	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
3686	chr10	91234496	91237465	+	0	NA	intron (NM_213606, intron 2 of 7)	intron (NM_213606, intron 2 of 7)	59333	NM_213606	387700	Hs.530338	XM_005269812	ENSG00000152779	SLC16A12	CJMG|MCT12	solute carrier family 16, member 12	protein-coding
4374	chr21	40330593	40331956	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	18426	NR_109962	101928435	Hs.385528	XR_244312	ENSG00000232837	AF064858.7	-	uncharacterized LOC101928435	ncRNA
18	chr1	5463481	5466295	+	0	NA	Intergenic	Intergenic	-159243	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
376	chr12	80944829	80946460	+	0	NA	intron (NM_001145026, intron 22 of 41)	intron (NM_001145026, intron 22 of 41)	107518	NM_001145026	374462	Hs.539284	NM_001145026		PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type, Q	protein-coding
4511	chr4	69598225	69600556	+	0	NA	Intergenic	L1M3f|LINE|L1	-62896	NM_001076	7366	Hs.150207	NM_001076	ENSG00000196620	UGT2B15	HLUG4|UDPGT 2B8|UDPGT2B15|UDPGTH3|UGT2B8	UDP glucuronosyltransferase 2 family, polypeptide B15	protein-coding
1393	chr7	25112175	25114012	+	0	NA	Intergenic	Intergenic	51887	NM_018947	54205	Hs.617193	NM_018947		CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
1167	chr5	71436219	71438582	+	0	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	-27894	NR_039967	100616377		NR_039967		MIR4803	-	microRNA 4803	ncRNA
609	chr18	25687437	25689564	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	68945	NM_001792	1000	Hs.606106	XM_005258181	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
4790	chr6	88875454	88876839	+	0	NA	promoter-TSS (NM_001160258)	promoter-TSS (NM_001160258)	-379	NM_001160258	1268	Hs.75110	XM_005248649	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
3652	chr10	21483414	21484504	+	0	NA	Intergenic	Intergenic	20728	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
3373	chr9	101864284	101870411	+	0	NA	promoter-TSS (NM_001130916)	promoter-TSS (NM_001130916)	-65	NM_001130916	7046	Hs.494622	XM_005252150	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|LDS1A|LDS2A|MSSE|SKR4|TGFR-1	transforming growth factor, beta receptor 1	protein-coding
148	chr10	20217700	20219466	+	0	NA	intron (NM_001282736, intron 1 of 12)	intron (NM_001282736, intron 1 of 12)	113211	NM_032812	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
1343	chr6	125512838	125515051	+	0	NA	intron (NM_001003395, intron 1 of 6)	intron (NM_001003395, intron 1 of 6)	38524	NM_001003395	7164	Hs.591347	XM_005267120	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
4948	chr9	71939509	71940643	+	0	NA	intron (NM_001127608, intron 1 of 10)	CpG	588	NM_001127608	9413	Hs.118003	XM_005252307	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	family with sequence similarity 189, member A2	protein-coding
2489	chr2	76387933	76390123	+	0	NA	Intergenic	Intergenic	-450917	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
2655	chr21	39681514	39686505	+	0	NA	Intergenic	Intergenic	39667	NM_170737	3772	Hs.411299	XM_005260975	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
726	chr2	72430312	72433347	+	0	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-56838	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
2509	chr2	111071826	111074239	+	0	NA	Intergenic	LTR56|LTR|ERV1	30602	NR_039941	100616123		NR_039941		MIR4436B1	MIR4436B|hsa-mir-4436b-1	microRNA 4436b-1	ncRNA
2955	chr5	172242820	172246085	+	0	NA	Intergenic	Intergenic	-16771	NM_001031711	57222	Hs.509163	NM_001031711	ENSG00000113719	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
2703	chr22	50919468	50921293	+	0	NA	exon (NM_024866, exon 1 of 2)	exon (NM_024866, exon 1 of 2)	227	NM_001253845	79924	Hs.743540	NM_001253845	ENSG00000128165	ADM2	AM2|dJ579N16.4	adrenomedullin 2	protein-coding
4919	chr8	118895436	118896839	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	227921	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
4210	chr2	101402333	101403395	+	0	NA	Intergenic	Intergenic	-33749	NM_002518	4862	Hs.705895	XM_005263953	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
4110	chr19	42992388	42993786	+	0	NA	intron (NR_073180, intron 2 of 2)	MER41-int|LTR|ERV1	39574	NM_001712	634	Hs.512682	NM_001024912	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	protein-coding
157	chr10	418021	420894	+	0	NA	intron (NM_014974, intron 17 of 36)	LTR14B|LTR|ERVK	193523	NM_001202468	10771	Hs.740145	XM_005252359	ENSG00000015171	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
964	chr3	111644440	111645967	+	0	NA	intron (NM_145753, intron 5 of 16)	intron (NM_145753, intron 5 of 16)	-52520	NM_018394	55347	Hs.477115	NM_001272069	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10	protein-coding
2009	chr12	92945030	92947123	+	0	NA	Intergenic	L2a|LINE|L2	-124152	NM_001025232	574016	Hs.551199	NM_001025232	ENSG00000205057	CLLU1OS	-	chronic lymphocytic leukemia up-regulated 1 opposite strand	protein-coding
1909	chr10	116263317	116269578	+	0	NA	intron (NM_001003407, intron 6 of 21)	L1PA16|LINE|L1	20238	NM_006720	3983	Hs.593868	XM_005269818	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
4192	chr2	69480065	69482705	+	0	NA	Intergenic	Intergenic	133001	NM_001244710	2673	Hs.580300	NM_001244710	ENSG00000198380	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
935	chr3	31402104	31404029	+	0	NA	Intergenic	Intergenic	-171425	NM_178862	201595	Hs.475812	XM_005264941		STT3B	SIMP|STT3-B	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)	protein-coding
2627	chr20	19943710	19948082	+	0	NA	intron (NM_001242581, intron 6 of 11)	intron (NM_001242581, intron 6 of 11)	-52038	NM_181528	51126	Hs.708298	XM_005260717	ENSG00000173418	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
3576	chr1	202072873	202079467	+	0	NA	Intergenic	MIR3|SINE|MIR	-15859	NM_004767	9283	Hs.132049	NM_004767		GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
1213	chr5	147617652	147619645	+	0	NA	Intergenic	MIRc|SINE|MIR	-29775	NM_001040129	153218	Hs.483771	NM_001040129	ENSG00000214510	SPINK13	HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3	serine peptidase inhibitor, Kazal type 13 (putative)	protein-coding
1093	chr4	129242811	129245042	+	0	NA	Intergenic	Intergenic	-33942	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
81	chr1	149249579	149252390	+	0	NA	Intergenic	Intergenic	-28492	NR_027002	388692	Hs.728022	NR_027002		LOC388692	-	uncharacterized LOC388692	ncRNA
1300	chr6	43877234	43880052	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	19878	NR_024478	100132354	Hs.376232	NR_024478		LOC100132354	-	uncharacterized LOC100132354	ncRNA
624	chr18	52764482	52766104	+	0	NA	Intergenic	Intergenic	-138554	NM_025214	80323	Hs.120790	XM_005266771	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
2598	chr20	36612350	36624862	+	0	NA	intron (NM_014657, intron 8 of 8)	L4|LINE|RTE	43227	NM_014657	9675	Hs.655481	XM_005260621	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
371	chr12	74884014	74885763	+	0	NA	Intergenic	L1P1|LINE|L1	-46663	NM_001136262	552889	Hs.744849	NM_001136262	ENSG00000253719	ATXN7L3B	-	ataxin 7-like 3B	protein-coding
204	chr10	90685750	90687742	+	0	NA	Intergenic	Intergenic	25834	NM_001613	59	Hs.500483	NM_001141945	ENSG00000107796	ACTA2	AAT6|ACTSA|MYMY5	actin, alpha 2, smooth muscle, aorta	protein-coding
1041	chr4	24105547	24108098	+	0	NA	Intergenic	Intergenic	-215122	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
1990	chr12	8040221	8045607	+	0	NA	intron (NM_001286237, intron 1 of 9)	intron (NM_001286237, intron 1 of 9)	878	NM_001286237	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
4611	chr5	17373533	17376222	+	0	NA	Intergenic	Intergenic	12542	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
3254	chr7	84157576	84160161	+	0	NA	Intergenic	Intergenic	-2924	NR_110080	101927378	Hs.539042	XR_242309	ENSG00000235139	AC003984.1	-	uncharacterized LOC101927378	ncRNA
814	chr20	11351611	11354895	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-99222	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
2492	chr2	85279348	85282796	+	0	NA	3' UTR (NM_020122, exon 7 of 7)	3' UTR (NM_020122, exon 7 of 7)	-79511	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7-like 1 (T-cell specific, HMG-box)	protein-coding
2109	chr13	99139748	99143464	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	32773	NM_003576	8428	Hs.508514	XM_005254077	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
884	chr21	43618782	43620702	+	0	NA	promoter-TSS (NM_207627)	promoter-TSS (NM_207627)	-57	NM_207627	9619	Hs.418279	XM_005261209	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding
4927	chr9	35470361	35471799	+	0	NA	non-coding (NR_003581, exon 13 of 18)	non-coding (NR_003581, exon 13 of 18)	-18927	NM_014806	9853	Hs.493796	NM_001135999	ENSG00000198853	RUSC2	Iporin	RUN and SH3 domain containing 2	protein-coding
3539	chr1	167517193	167518870	+	0	NA	intron (NM_003851, intron 1 of 3)	intron (NM_003851, intron 1 of 3)	5025	NM_003851	8804	Hs.5710	NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A-stimulated genes 1	protein-coding
4910	chr8	66860389	66861643	+	0	NA	Intergenic	Intergenic	-72775	NM_033105	85479	Hs.491885	NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
749	chr2	98950156	98951645	+	0	NA	Intergenic	Intergenic	-11718	NM_001079878	1261	Hs.234785	XM_005263868	ENSG00000144191	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel alpha 3	protein-coding
345	chr12	20143635	20146778	+	0	NA	Intergenic	MIRb|SINE|MIR	-22413	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
3323	chr9	34373467	34377919	+	0	NA	intron (NM_020702, intron 1 of 1)	intron (NM_020702, intron 1 of 1)	1201	NM_020702	57462	Hs.522083	NM_020702		KIAA1161	NET37	KIAA1161	protein-coding
4408	chr3	4872155	4873700	+	0	NA	intron (NM_001099952, intron 57 of 58)	intron (NM_001099952, intron 57 of 58)	75259	NR_037903	100507582	Hs.434505	XR_245085	ENSG00000235831	BHLHE40-AS1	AC018816.4	BHLHE40 antisense RNA 1	ncRNA
4846	chr7	29602150	29605354	+	0	NA	5' UTR (NM_175887, exon 1 of 2)	5' UTR (NM_175887, exon 1 of 2)	325	NM_175887	222171	Hs.91109	XM_005249653	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
613	chr18	29958017	29959462	+	0	NA	intron (NM_001242409, intron 2 of 5)	intron (NM_001242409, intron 2 of 5)	91708	NM_022751	64762	Hs.444314	XM_005258328	ENSG00000141441	GAREM	C18orf11|FAM59A|Gm944	GRB2 associated, regulator of MAPK1	protein-coding
952	chr3	69488316	69489206	+	0	NA	Intergenic	Intergenic	-53331	NM_015123	23150	Hs.709671	XM_005264720	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
2691	chr22	25515298	25517680	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	-7830	NR_038941	100128531	Hs.662126	NR_038941	ENSG00000203280	LOC100128531	-	uncharacterized LOC100128531	ncRNA
4804	chr6	126234456	126235869	+	0	NA	intron (NM_001199621, intron 9 of 14)	L1ME4a|LINE|L1	-5208	NM_001199622	135112	Hs.171426	XM_005266822	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
4498	chr3	157216690	157218175	+	0	NA	promoter-TSS (NM_024621)	promoter-TSS (NM_024621)	13	NM_024621	79674	Hs.658046	XM_005247765	ENSG00000197415	VEPH1	MELT|VEPH	ventricular zone expressed PH domain-containing 1	protein-coding
1071	chr4	55575797	55576766	+	0	NA	intron (NM_001093772, intron 7 of 20)	intron (NM_001093772, intron 7 of 20)	52186	NM_001093772	3815	Hs.479754	XM_005265740	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
3058	chr6	43956592	43962665	+	0	NA	Intergenic	MIRb|SINE|MIR	-8709	NM_001171992	221416	Hs.531926	NM_001171992	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
4331	chr20	22979690	22981513	+	0	NA	Intergenic	Intergenic	-35456	NM_001052	6754	Hs.673846	NM_001052	ENSG00000132671	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
253	chr11	20033753	20036304	+	0	NA	intron (NM_001244963, intron 12 of 39)	intron (NM_001244963, intron 12 of 39)	-9074	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
4158	chr2	30516341	30516966	+	0	NA	Intergenic	Intergenic	62256	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
3278	chr7	129608657	129611283	+	0	NA	Intergenic	Intergenic	-17170	NM_003344	7328	Hs.643548	NM_001202498	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
2427	chr2	243022188	243023984	+	0	NA	Intergenic	Intergenic	-7758	NR_024437	728323	Hs.471887	XR_241435		LOC728323	-	uncharacterized LOC728323	ncRNA
63	chr1	112135137	112136790	+	0	NA	Intergenic	Intergenic	14977	NR_034126	100129269	Hs.689728	XR_246214		LINC01160	RP5-836N10.1	long intergenic non-protein coding RNA 1160	ncRNA
5009	chrX	73461465	73463995	+	0	NA	intron (NR_028379, intron 5 of 6)	7SLRNA|srpRNA|srpRNA	-24277	NR_030620	100126317		NR_030620	ENSG00000212027	MIR374B	MIRN374B	microRNA 374b	ncRNA
1637	chr1	120599732	120602791	+	0	NA	intron (NM_024408, intron 1 of 33)	MIRc|SINE|MIR	11056	NM_001200001	4853	Hs.487360	XM_005270901	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
179	chr10	52320427	52323129	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	61959	NM_147156	259230	Hs.654698	XM_005269675	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
1105	chr4	150922274	150929161	+	0	NA	Intergenic	Intergenic	-73709	NM_001040260	166614	Hs.591683	XM_005262785	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
3705	chr10	116852200	116853921	+	0	NA	promoter-TSS (NM_207303)	promoter-TSS (NM_207303)	-64	NM_001276282	26033	Hs.501127	NM_001276282	ENSG00000107518	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin-like 1	protein-coding
1334	chr6	114315997	114318332	+	0	NA	Intergenic	Intergenic	-24805	NR_033441	3066	Hs.3352	XM_005266954	ENSG00000196591	HDAC2	HD2|RPD3|YAF1	histone deacetylase 2	protein-coding
3948	chr15	71148827	71149528	+	0	NA	intron (NM_001284357, intron 1 of 16)	intron (NM_001284357, intron 1 of 16)	-2573	NM_197958	55323	Hs.416755	NM_001286679	ENSG00000166173	LARP6	ACHN	La ribonucleoprotein domain family, member 6	protein-coding
2499	chr2	99893949	99898423	+	0	NA	Intergenic	AluSp|SINE|Alu	21453	NM_174898	129530	Hs.164589	XM_005263869	ENSG00000144214	LYG1	SALW1939	lysozyme G-like 1	protein-coding
3776	chr12	15781053	15782872	+	0	NA	intron (NM_004447, intron 18 of 20)	intron (NM_004447, intron 18 of 20)	82684	NM_030668	5800	Hs.160871	NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
2805	chr3	138108017	138110128	+	0	NA	intron (NM_001252090, intron 2 of 5)	intron (NM_001252090, intron 2 of 5)	41102	NM_001252090	22808	Hs.735125	XM_005247228	ENSG00000158186	MRAS	M-RAs|R-RAS3|RRAS3	muscle RAS oncogene homolog	protein-coding
2096	chr13	23922267	23925411	+	0	NA	intron (NM_001278055, intron 7 of 7)	intron (NM_001278055, intron 7 of 7)	25843	NM_001278055	26278	Hs.159492	XM_005266338	ENSG00000151835	SACS	ARSACS|DNAJC29	spastic ataxia of Charlevoix-Saguenay (sacsin)	protein-coding
1784	chr1	212768391	212770605	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-12472	NM_001674	467	Hs.460	XM_005273146	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
938	chr3	33523072	33524795	+	0	NA	Intergenic	MER101-int|LTR|ERV1	-42036	NM_001128161	7342	Hs.729120	NM_001128160	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1 (LBP-1a)	protein-coding
4016	chr17	28670695	28673056	+	0	NA	Intergenic	Intergenic	-10810	NM_206832	388364	Hs.371005	XM_005257969	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
3882	chr14	32942166	32943509	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	144358	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
2149	chr14	69001547	69003853	+	0	NA	intron (NM_133509, intron 10 of 10)	MLT1N2|LTR|ERVL-MaLR	257931	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
1830	chr10	73722659	73747368	+	0	NA	intron (NM_004273, intron 1 of 2)	MIR|SINE|MIR	10893	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
1620	chr1	120586114	120588486	+	0	NA	intron (NM_024408, intron 1 of 33)	AT_rich|Low_complexity|Low_complexity	25017	NM_001200001	4853	Hs.487360	XM_005270901	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
2241	chr16	73100963	73106780	+	0	NA	Intergenic	Intergenic	-11337	NM_001164766	463	Hs.598297	XM_005255957	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
3917	chr15	64813085	64816207	+	0	NA	intron (NM_015042, intron 1 of 8)	intron (NM_015042, intron 1 of 8)	23027	NM_015042	23060	Hs.696256	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
3060	chr6	56550674	56558845	+	0	NA	intron (NM_183380, intron 5 of 93)	intron (NM_183380, intron 5 of 93)	-47065	NM_001723	667	Hs.735651	XM_005249310	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
3167	chr6	117840641	117845964	+	0	NA	intron (NM_173674, intron 4 of 14)	intron (NM_173674, intron 4 of 14)	39482	NM_173674	285761	Hs.658304	XM_005266941	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
4203	chr2	85280020	85282760	+	0	NA	3' UTR (NM_020122, exon 7 of 7)	3' UTR (NM_020122, exon 7 of 7)	-79193	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7-like 1 (T-cell specific, HMG-box)	protein-coding
2370	chr19	1565639	1568327	+	0	NA	intron (NM_001174118, intron 1 of 2)	CpG	1074	NM_203304	399664	Hs.436495	XM_005276646	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
929	chr3	25548658	25552029	+	0	NA	intron (NM_016152, intron 3 of 7)	intron (NM_016152, intron 3 of 7)	80509	NM_000965	5915	Hs.733004	XM_005265361	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RRB2	retinoic acid receptor, beta	protein-coding
2554	chr2	218153363	218155532	+	0	NA	intron (NR_026597, intron 12 of 12)	intron (NR_026597, intron 12 of 12)	-429665	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
1583	chrX	76198844	76200164	+	0	NA	Intergenic	L1PA3|LINE|L1	-59719	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
1538	chr9	101241480	101243351	+	0	NA	intron (NM_005458, intron 5 of 18)	intron (NM_005458, intron 5 of 18)	-224412	NM_001267571	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
258	chr11	28840852	28842927	+	0	NA	Intergenic	MIR|SINE|MIR	-342794	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
2620	chr20	13779374	13783899	+	0	NA	intron (NM_001039375, intron 5 of 9)	MLT1H|LTR|ERVL-MaLR	15964	NR_029377	79133	Hs.472165	NM_001039375	ENSG00000101247	NDUFAF5	C20orf7|bA526K24.2|dJ842G6.1	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
4022	chr17	79281880	79284617	+	0	NA	promoter-TSS (NR_038080)	promoter-TSS (NR_038080)	-200	NR_038080	284185	Hs.631762	NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
2138	chr14	51124105	51125878	+	0	NA	intron (NM_021818, intron 2 of 4)	intron (NM_021818, intron 2 of 4)	10080	NM_021818	60485	Hs.706933	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador homolog 1 (Drosophila)	protein-coding
1055	chr4	41525433	41529950	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-87098	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4050	chr17	60969783	60971219	+	0	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-84759	NM_152598	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
3610	chr1	234630613	234632144	+	0	NA	Intergenic	Intergenic	-16529	NM_005646	6894	Hs.498115	XM_005273234	ENSG00000059588	TARBP1	TRM3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
2447	chr2	30492755	30500418	+	0	NA	Intergenic	Intergenic	42189	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
3140	chr6	55746992	55749288	+	0	NA	Intergenic	Intergenic	-7765	NM_021073	653	Hs.296648	XM_005249302	ENSG00000112175	BMP5	-	bone morphogenetic protein 5	protein-coding
141	chr1	245747690	245749796	+	0	NA	intron (NM_018012, intron 5 of 14)	intron (NM_018012, intron 5 of 14)	430456	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
3043	chr6	21884405	21890335	+	0	NA	intron (NR_015410, intron 4 of 11)	L2|LINE|L2	220695	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4939	chr9	26261088	26262190	+	0	NA	Intergenic	LTR19B|LTR|ERV1	194966	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
4228	chr2	135689996	135691533	+	0	NA	intron (NR_037649, intron 2 of 10)	intron (NR_037649, intron 2 of 10)	14372	NM_001241	905	Hs.744115	XM_005263830	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
4520	chr4	154073614	154075690	+	0	NA	intron (NM_001130067, intron 1 of 11)	CpG	382	NM_001130067	23321	Hs.435711	XM_005262872	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
1230	chr5	170182648	170186468	+	0	NA	Intergenic	Intergenic	-26165	NM_014211	2568	Hs.26225	XM_005265871	ENSG00000094755	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
2793	chr3	112470009	112472543	+	0	NA	Intergenic	LTR22A|LTR|ERVK	-3110	NR_110017	101929694	Hs.385630	XR_241545	ENSG00000240893	RP11-572C15.5	-	uncharacterized LOC101929694	ncRNA
2993	chr5	95742298	95745419	+	0	NA	intron (NM_001177876, intron 3 of 7)	intron (NM_001177876, intron 3 of 7)	4831	NM_001177876	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
1917	chr10	131753301	131755192	+	0	NA	intron (NM_001005463, intron 6 of 15)	intron (NM_001005463, intron 6 of 15)	7845	NM_001005463	253738	Hs.591374	XM_005252667	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
1713	chr1	109934574	109936443	+	0	NA	intron (NM_002959, intron 1 of 19)	intron (NM_002959, intron 1 of 19)	471	NM_001205228	6272	Hs.703487	XM_005271100	ENSG00000134243	SORT1	Gp95|LDLCQ6|NT3	sortilin 1	protein-coding
3590	chr1	210012652	210014057	+	0	NA	intron (NM_014388, intron 7 of 11)	L2b|LINE|L2	12042	NM_014388	27042	Hs.194754	NM_014388	ENSG00000117597	DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding
1060	chr4	41549948	41551376	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-64127	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
3759	chr12	20364389	20367059	+	0	NA	Intergenic	Intergenic	-156455	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
3722	chr11	20055912	20058916	+	0	NA	intron (NM_001111019, intron 2 of 27)	intron (NM_001111019, intron 2 of 27)	13312	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
2420	chr2	216939649	216944663	+	0	NA	intron (NM_018441, intron 1 of 7)	AluY|SINE|Alu	4383	NM_018441	55825	Hs.281680	NM_018441	ENSG00000115425	PECR	DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
2104	chr13	49355682	49357561	+	0	NA	Intergenic	L1PBb|LINE|L1	75670	NM_020377	57105	Hs.614318	XM_005266475	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
2894	chr4	123756846	123759769	+	0	NA	intron (NM_002006, intron 1 of 2)	intron (NM_002006, intron 1 of 2)	10444	NM_002006	2247	Hs.284244	XM_005262836	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2 (basic)	protein-coding
2126	chr14	90975981	90981417	+	0	NA	Intergenic	Intergenic	57125	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	AL096869.5	long intergenic non-protein coding RNA 642	ncRNA
4450	chr3	99766288	99767160	+	0	NA	intron (NM_001042459, intron 1 of 4)	intron (NM_001042459, intron 1 of 4)	-49665	NR_031662	100313938		NR_031662	ENSG00000221369	MIR548G	MIRN548G|hsa-mir-548g	microRNA 548g	ncRNA
2858	chr4	6948741	6950965	+	0	NA	intron (NM_001113361, intron 2 of 13)	L2c|LINE|L2	38358	NM_020773	57533	Hs.518611	XM_005247985	ENSG00000132405	TBC1D14	-	TBC1 domain family, member 14	protein-coding
900	chr3	15365321	15368389	+	0	NA	intron (NM_001018009, intron 2 of 8)	L2a|LINE|L2	7281	NM_004844	9467	Hs.257761	XM_005265588	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
4221	chr2	133427018	133429256	+	0	NA	5' UTR (NM_144586, exon 1 of 3)	5' UTR (NM_144586, exon 1 of 3)	344	NM_144586	116372	Hs.432395	XM_005263583	ENSG00000150551	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
318	chr12	27342556	27347383	+	0	NA	Intergenic	Intergenic	-52109	NM_015000	23012	Hs.184523	XM_005253342	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
2526	chr2	151456937	151459319	+	0	NA	Intergenic	Intergenic	-27283	NR_110246	101929282	Hs.126866	XR_241329		AC104777.4	-	uncharacterized LOC101929282	ncRNA
972	chr3	125604340	125605562	+	0	NA	Intergenic	Intergenic	-30493	NR_024250	100125556	Hs.553949	NR_024250	ENSG00000171084	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
473	chr14	70353127	70356285	+	0	NA	intron (NM_001034852, intron 1 of 11)	intron (NM_001034852, intron 1 of 11)	8592	NM_022137	64093	Hs.497349	XM_005267995	ENSG00000198732	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding
2572	chr2	239207693	239209907	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-11593	NM_022817	8864	Hs.58756	XM_005246111	ENSG00000132326	PER2	FASPS|FASPS1	period circadian clock 2	protein-coding
1774	chr1	208373759	208378162	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	41705	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
3	chr1	13401229	13403922	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	-11827	NM_001012276	391002		NM_001012276	ENSG00000182330	PRAMEF8	-	PRAME family member 8	protein-coding
248	chr11	12560602	12564129	+	0	NA	Intergenic	MIRc|SINE|MIR	-133604	NM_021961	7003	Hs.655331	XM_005253090	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
3888	chr14	51026698	51027812	+	0	NA	intron (NM_181598, intron 1 of 12)	CpG	512	NM_015915	51062	Hs.584905	NM_001127713	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
802	chr2	230589928	230592174	+	0	NA	Intergenic	Intergenic	-11765	NM_139072	92737	Hs.234074	XM_005246950	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
4782	chr6	56516725	56518821	+	0	NA	intron (NM_183380, intron 6 of 93)	intron (NM_183380, intron 6 of 93)	-10079	NM_001723	667	Hs.735651	XM_005249310	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
3924	chr15	33116428	33117886	+	0	NA	intron (NM_001277313, intron 17 of 20)	L2b|LINE|L2	-106091	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
3420	chrX	46636782	46638737	+	0	NA	Intergenic	MER4C|LTR|ERV1	-19152	NM_001257291	84679	Hs.91389	XM_005272680		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
2063	chr12	74720588	74723739	+	0	NA	Intergenic	Intergenic	-35752	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
3723	chr11	28587399	28589129	+	0	NA	Intergenic	Intergenic	-89169	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
3269	chr7	107884175	107887923	+	0	NA	intron (NM_001193582, intron 3 of 30)	intron (NM_001193582, intron 3 of 30)	-5435	NM_001037132	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
2632	chr20	23024489	23032467	+	0	NA	exon (NM_000361, exon 1 of 1)	exon (NM_000361, exon 1 of 1)	1823	NM_000361	7056	Hs.2030	NM_000361	ENSG00000178726	THBD	AHUS6|BDCA3|CD141|THPH12|THRM|TM	thrombomodulin	protein-coding
1049	chr4	41377019	41378680	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	15047	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4544	chr4	41508747	41510391	+	0	NA	intron (NM_014988, intron 2 of 26)	MER21C|LTR|ERVL	-105220	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4869	chr7	98759756	98760943	+	0	NA	Intergenic	Intergenic	-18606	NM_001199847	57154	Hs.189329	XM_005250507	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
2812	chr3	155378454	155385394	+	0	NA	intron (NM_014996, intron 1 of 21)	intron (NM_014996, intron 1 of 21)	12181	NM_001130961	23007	Hs.567423	XM_005247238	ENSG00000114805	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
1488	chr8	131892156	131893897	+	0	NA	intron (NM_001115, intron 8 of 17)	MER94|DNA|hAT-Blackjack	159809	NM_001115	114	Hs.591859	XM_005250769	ENSG00000155897	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8 (brain)	protein-coding
560	chr16	67396032	67398567	+	0	NA	intron (NM_018296, intron 5 of 13)	MIRc|SINE|MIR	16041	NM_001161575	55282	Hs.125139	XM_005256025	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
2830	chr4	169737083	169739304	+	0	NA	intron (NM_016081, intron 10 of 20)	intron (NM_016081, intron 10 of 20)	-14963	NM_001166110	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
798	chr2	223858497	223859918	+	0	NA	Intergenic	Intergenic	-57441	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel, Isk-related family, member 4	protein-coding
898	chr3	71302902	71304698	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-9484	NM_001244814	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
3892	chr14	65105858	65106833	+	0	NA	Intergenic	MER41A|LTR|ERV1	-64848	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
2725	chr3	157220277	157222118	+	0	NA	promoter-TSS (NM_001167911)	promoter-TSS (NM_001167911)	-61	NM_001167912	79674	Hs.658046	XM_005247765	ENSG00000197415	VEPH1	MELT|VEPH	ventricular zone expressed PH domain-containing 1	protein-coding
3670	chr10	70066257	70067199	+	0	NA	intron (NM_022129, intron 1 of 9)	intron (NM_022129, intron 1 of 9)	-25040	NM_012207	3189	Hs.643472	XM_005269748	ENSG00000096746	HNRNPH3	2H9|HNRPH3	heterogeneous nuclear ribonucleoprotein H3 (2H9)	protein-coding
4932	chr9	104085294	104090389	+	0	NA	TTS (NM_207299)	TTS (NM_207299)	57960	NM_001127610	570	Hs.284712	NM_001127610	ENSG00000136881	BAAT	BACAT|BAT	bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)	protein-coding
4316	chr20	11187885	11189639	+	0	NA	Intergenic	MIRc|SINE|MIR	65269	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
1273	chr6	14034742	14036478	+	0	NA	Intergenic	Intergenic	-81877	NM_001251901	9308	Hs.595133	NM_001040280	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
2516	chr2	133950504	133953158	+	0	NA	intron (NM_207363, intron 5 of 19)	intron (NM_207363, intron 5 of 19)	-71936	NR_110294	101928161	Hs.661917	XR_244858	ENSG00000226953	AC010890.1	-	uncharacterized LOC101928161	ncRNA
451	chr14	25447712	25449391	+	0	NA	intron (NM_014178, intron 1 of 5)	MamRep605|Unknown|Unknown	70544	NM_014178	29091	Hs.508958	XM_005267556	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
3362	chr9	85661122	85664278	+	0	NA	intron (NM_152573, intron 1 of 16)	intron (NM_152573, intron 1 of 16)	15343	NM_152573	158158	Hs.129136	XM_005251730	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
2616	chr20	11185411	11190233	+	0	NA	Intergenic	Intergenic	66209	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
1408	chr7	39722277	39724304	+	0	NA	intron (NM_005402, intron 1 of 4)	intron (NM_005402, intron 1 of 4)	-49877	NR_026999	349114	Hs.414183	NM_198284		LINC00265	AC004987.7|NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
2448	chr2	30514660	30518282	+	0	NA	Intergenic	Intergenic	62074	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
4224	chr2	134083309	134085399	+	0	NA	intron (NM_207363, intron 3 of 19)	intron (NM_207363, intron 3 of 19)	60587	NR_110294	101928161	Hs.661917	XR_244858	ENSG00000226953	AC010890.1	-	uncharacterized LOC101928161	ncRNA
2969	chr5	34742618	34745265	+	0	NA	intron (NM_001145525, intron 4 of 19)	intron (NM_001145525, intron 4 of 19)	56277	NM_001145523	26064	Hs.431400	XM_005248284	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
4249	chr2	205764640	205766564	+	0	NA	intron (NM_205863, intron 2 of 21)	L1M1|LINE|L1	355086	NM_057177	117583	Hs.657382	XM_005246273	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
4557	chr4	88160978	88161900	+	0	NA	Intergenic	Intergenic	-19765	NM_020803	57563	Hs.106601	XM_005263151	ENSG00000145332	KLHL8	-	kelch-like family member 8	protein-coding
2721	chr3	124352902	124355780	+	0	NA	intron (NM_001024660, intron 36 of 59)	intron (NM_001024660, intron 36 of 59)	50835	NM_007064	8997	Hs.8004	NM_001024660	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
3595	chr1	219486547	219487474	+	0	NA	Intergenic	AluSx1|SINE|Alu	139818	NM_138794	127018	Hs.657617	XM_005273046	ENSG00000143353	LYPLAL1	-	lysophospholipase-like 1	protein-coding
578	chr17	12539928	12541405	+	0	NA	TTS (NR_034144)	TTS (NR_034144)	-28541	NM_153604	93649	Hs.567641	XM_005256863	ENSG00000141052	MYOCD	MYCD	myocardin	protein-coding
4788	chr6	84736588	84737224	+	0	NA	Intergenic	Intergenic	-6514	NM_138409	112609	Hs.370055	XM_005248644	ENSG00000135324	MRAP2	BMIQ18|C6orf117|RP11-51G5.2|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
4909	chr8	50967988	50970289	+	0	NA	intron (NM_001287814, intron 1 of 16)	MIR|SINE|MIR	144799	NM_018967	54212	Hs.591869	XM_005251261	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin, gamma 1	protein-coding
4418	chr3	29724180	29726263	+	0	NA	intron (NM_001003792, intron 4 of 13)	intron (NM_001003792, intron 4 of 13)	402418	NM_001177711	27303	Hs.221436	XM_005265060	ENSG00000144642	RBMS3	-	RNA binding motif, single stranded interacting protein 3	protein-coding
4384	chr22	25515567	25517376	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	-7812	NR_038941	100128531	Hs.662126	NR_038941	ENSG00000203280	LOC100128531	-	uncharacterized LOC100128531	ncRNA
695	chr2	30468232	30470264	+	0	NA	intron (NM_030915, intron 2 of 2)	Charlie1a|DNA|hAT-Charlie	14851	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
3331	chr9	100976829	100997535	+	0	NA	intron (NM_001267571, intron 5 of 12)	MIRb|SINE|MIR	4317	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA mir-6854	ncRNA
540	chr16	11522924	11524642	+	0	NA	Intergenic	L1MC4|LINE|L1	84472	NM_152308	116028	Hs.347524	NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
1615	chrY	20346127	20348231	+	0	NA	Intergenic	L1M4c|LINE|L1	49844	NM_004677	9082	Hs.158346	NM_004677		XKRY	XKRY1	XK, Kell blood group complex subunit-related, Y-linked	protein-coding
3137	chr6	52414374	52417790	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	25780	NM_012288	9697	Hs.520182	NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
3065	chr6	85786495	85788785	+	0	NA	Intergenic	Intergenic	-313686	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
2073	chr12	102931560	102934512	+	0	NA	Intergenic	Intergenic	-58658	NM_001111283	3479	Hs.160562	XM_005268835	ENSG00000017427	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
1732	chr1	154399210	154402277	+	0	NA	intron (NM_000565, intron 1 of 9)	intron (NM_000565, intron 1 of 9)	23074	NM_181359	3570	Hs.135087	XM_005245138	ENSG00000160712	IL6R	CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
861	chr20	45436759	45438335	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-85716	NM_005244	2139	Hs.722416	XM_005260327	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
3706	chr10	120759929	120761269	+	0	NA	Intergenic	Intergenic	-28629	NM_199461	340719	Hs.591918	NM_001009553	ENSG00000188613	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
337	chr12	15878724	15880301	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	62998	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
2406	chr2	37990986	37997873	+	0	NA	Intergenic	Intergenic	62425	NR_110011	101929559	Hs.722926	XR_244986	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
3172	chr6	126232367	126236217	+	0	NA	intron (NM_001199621, intron 9 of 14)	MLT2D|LTR|ERVL	-6078	NM_001199622	135112	Hs.171426	XM_005266822	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
76	chr1	145113382	145117748	+	0	NA	intron (NM_004892, intron 4 of 5)	intron (NM_004892, intron 4 of 5)	19158	NM_004892	9554	Hs.632438	NM_004892		SEC22B	ERS-24|SEC22L1	SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)	protein-coding
2718	chr3	112389310	112397816	+	0	NA	Intergenic	Intergenic	-33573	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
982	chr3	159516129	159517852	+	0	NA	intron (NM_001197113, intron 5 of 10)	intron (NM_001197113, intron 5 of 10)	-40660	NM_001197109	29970	Hs.134665	XM_005247405	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
571	chr17	4423731	4425978	+	0	NA	intron (NM_001124758, intron 2 of 12)	MER63B|DNA|hAT-Blackjack	22725	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
1190	chr5	114683959	114686161	+	0	NA	Intergenic	Intergenic	-52602	NM_001040440	153733	Hs.436121	XM_005271908	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
2592	chr20	20689457	20694264	+	0	NA	intron (NM_020343, intron 1 of 39)	intron (NM_020343, intron 1 of 39)	1406	NM_020343	57186	Hs.472285	XM_005260768	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
1171	chr5	81691901	81693595	+	0	NA	Intergenic	Intergenic	91582	NM_001017971	92270	Hs.729805	NM_001017971	ENSG00000205464	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
1345	chr6	125627976	125629365	+	0	NA	Intergenic	Intergenic	-5388	NM_016063	51020	Hs.32826	XR_245538	ENSG00000111906	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
2290	chr17	15560060	15563885	+	0	NA	intron (NM_006470, intron 3 of 8)	Charlie18a|DNA|hAT-Charlie	24221	NM_006470	10626	Hs.123534	XM_005256415	ENSG00000221926	TRIM16	EBBP	tripartite motif containing 16	protein-coding
4431	chr3	50353218	50356176	+	0	NA	TTS (NM_003773)	TTS (NM_003773)	-4885	NM_153281	3373	Hs.75619	NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|NAT6	hyaluronoglucosaminidase 1	protein-coding
4153	chr2	30453614	30456074	+	0	NA	intron (NM_030915, intron 1 of 2)	CpG	447	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
1123	chr5	52132906	52135120	+	0	NA	intron (NM_181501, intron 1 of 28)	intron (NM_181501, intron 1 of 28)	49877	NM_181501	3672	Hs.644352	NM_181501		ITGA1	CD49a|VLA1	integrin, alpha 1	protein-coding
236	chr11	94041942	94044243	+	0	NA	Intergenic	LTR44|LTR|ERV1	4289	NM_001199206	390243	Hs.553758	NM_001080486	ENSG00000183560	FOLR4	Folbp3	folate receptor 4, delta (putative)	protein-coding
758	chr2	112292337	112293977	+	0	NA	Intergenic	Intergenic	-40465	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
706	chr2	38012912	38015171	+	0	NA	Intergenic	MIRc|SINE|MIR	42813	NR_110011	101929559	Hs.722926	XR_244986	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
14	chr1	201176970	201181733	+	0	NA	exon (NM_001164586, exon 12 of 24)	exon (NM_001164586, exon 12 of 24)	19398	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
4550	chr4	77510945	77512033	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	16768	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
4761	chr6	30677280	30678468	+	0	NA	intron (NM_014641, intron 7 of 14).2	AluSx1|SINE|Alu	7584	NM_014641	9656	Hs.653495	XM_005249492	ENSG00000137337	MDC1	NFBD1	mediator of DNA-damage checkpoint 1	protein-coding
2587	chr20	6141088	6148409	+	0	NA	Intergenic	Intergenic	-40557	NM_017671	55612	Hs.472054	NM_017671	ENSG00000101311	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	fermitin family member 1	protein-coding
1608	chrX	139470428	139471770	+	0	NA	Intergenic	Intergenic	116126	NM_005634	6658	Hs.157429	NM_005634	ENSG00000134595	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
2328	chr18	10797531	10800582	+	0	NA	intron (NM_022068, intron 11 of 51)	intron (NM_022068, intron 11 of 51)	273183	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	N-ethylmaleimide-sensitive factor attachment protein, gamma	protein-coding
3232	chr7	29644777	29651073	+	0	NA	Intergenic	Intergenic	44498	NM_175887	222171	Hs.91109	XM_005249653	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
2474	chr2	65201112	65204366	+	0	NA	Intergenic	Intergenic	-12840	NM_001193493	6509	Hs.654352	NM_001135581	ENSG00000115902	SLC1A4	ASCT1|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding
2889	chr4	100643351	100646162	+	0	NA	Intergenic	Intergenic	-93225	NM_014395	27071	Hs.708484	XM_005262919	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides	protein-coding
3786	chr12	20098645	20099741	+	0	NA	Intergenic	Intergenic	-68426	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
234	chr11	72579841	72581575	+	0	NA	intron (NM_014824, intron 12 of 19)	intron (NM_014824, intron 12 of 19)	55257	NM_033388	89849	Hs.653186	XM_005274376	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
594	chr17	75155418	75157796	+	0	NA	intron (NM_003003, intron 3 of 16)	intron (NM_003003, intron 3 of 16)	19602	NM_003003	6397	Hs.464184	NM_001039573	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
2924	chr5	58580855	58597930	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-17447	NM_001197220	5144	Hs.117545	XM_005248537	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
1438	chr7	134975182	134977919	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	59819	NM_182489	346673	Hs.592279	NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
1903	chr10	105646503	105651560	+	0	NA	intron (NM_024928, intron 8 of 9)	intron (NM_024928, intron 8 of 9)	29014	NM_024928	79991	Hs.62314	NM_024928		OBFC1	AAF-44|AAF44|RP11-541N10.2|RPA-32|STN1|bA541N10.2	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
4766	chr6	33566281	33568437	+	0	NA	Intergenic	Intergenic	-6244	NR_027908	401253	Hs.520075	NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
4580	chr4	154055489	154058536	+	0	NA	Intergenic	AluJo|SINE|Alu	-17258	NM_001130067	23321	Hs.435711	XM_005262872	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
4302	chr20	1793254	1794569	+	0	NA	Intergenic	AluSx4|SINE|Alu	-33519	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
3554	chr1	183667928	183670647	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	-46839	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
3116	chr6	24742006	24744660	+	0	NA	Intergenic	Intergenic	-23930	NM_030939	81688	Hs.744857	XM_005249433		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
2776	chr3	102451798	102454186	+	0	NA	Intergenic	Intergenic	299133	NM_175056	131368	Hs.352213	XM_005247110	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
4443	chr3	71178498	71180746	+	0	NA	intron (NM_001244808, intron 6 of 20)	intron (NM_001244808, intron 6 of 20)	470	NM_001244815	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
4759	chr6	30662322	30664239	+	0	NA	Intergenic	AluJb|SINE|Alu	-4083	NM_007243	11270	Hs.519993	NM_001270707	ENSG00000137404	NRM	NRM29	nurim (nuclear envelope membrane protein)	protein-coding
1000	chr3	194247272	194248617	+	0	NA	Intergenic	L2c|LINE|L2	40075	NR_033929	401106	Hs.638278	NR_033929		LINC00884	-	long intergenic non-protein coding RNA 884	ncRNA
43	chr1	47788362	47791885	+	0	NA	Intergenic	AluJb|SINE|Alu	-9346	NM_016308	51727	Hs.731647	NM_001136140	ENSG00000162368	CMPK1	CK|CMK|CMPK|UMK|UMP-CMPK|UMPK	cytidine monophosphate (UMP-CMP) kinase 1, cytosolic	protein-coding
2582	chr20	506830	518051	+	0	NA	intron (NM_177559, intron 1 of 13)	intron (NM_177559, intron 1 of 13)	12042	NM_177560	1457	Hs.644056	NM_001895		CSNK2A1	CK2A1|CKII|CSNK2A3	casein kinase 2, alpha 1 polypeptide	protein-coding
3502	chr1	59397034	59399756	+	0	NA	Intergenic	HAL1|LINE|L1	147572	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	RP4-794H19.2	long intergenic non-protein coding RNA 1135	ncRNA
1728	chr1	151970074	151975366	+	0	NA	Intergenic	Intergenic	-6006	NM_002966	6281	Hs.143873	NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
3955	chr15	78348326	78350253	+	0	NA	intron (NM_015079, intron 1 of 12)	intron (NM_015079, intron 1 of 12)	20705	NM_144572	23102	Hs.567426	XM_005254242	ENSG00000167202	TBC1D2B	-	TBC1 domain family, member 2B	protein-coding
3763	chr12	58817510	58821062	+	0	NA	Intergenic	Intergenic	483841	NM_033276	91419	Hs.61188	XM_005269223	ENSG00000166896	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
193	chr10	79441716	79443546	+	0	NA	Intergenic	MIR|SINE|MIR	-45054	NM_001271522	3778	Hs.144795	XM_005269773	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
288	chr11	110778046	110779735	+	0	NA	Intergenic	Intergenic	-194978	NM_001258418	57569	Hs.6136	XM_005271628	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
119	chr1	201167104	201169658	+	0	NA	intron (NM_001164586, intron 5 of 23)	intron (NM_001164586, intron 5 of 23)	8428	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
4875	chr7	107874469	107875260	+	0	NA	intron (NM_001037132, intron 3 of 29)	intron (NM_001037132, intron 3 of 29)	5750	NM_001037132	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
3925	chr15	33119732	33122015	+	0	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-109807	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
4981	chr9	118433597	118436839	+	0	NA	Intergenic	Intergenic	71300	NR_109805	101928775	Hs.522362	XR_242668		LOC101928775	-	uncharacterized LOC101928775	ncRNA
3374	chr9	104076209	104080088	+	0	NA	intron (NM_017753, intron 6 of 7)	intron (NM_017753, intron 6 of 7)	67653	NM_001127610	570	Hs.284712	NM_001127610	ENSG00000136881	BAAT	BACAT|BAT	bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)	protein-coding
1180	chr5	95719408	95721184	+	0	NA	Intergenic	Intergenic	28393	NM_001177876	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
4730	chr6	7691019	7693207	+	0	NA	Intergenic	Intergenic	-34898	NM_001718	654	Hs.285671	XM_005249305	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
430	chr13	49465239	49467070	+	0	NA	Intergenic	MIRc|SINE|MIR	-83894	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
3602	chr1	227001532	227004338	+	0	NA	Intergenic	Intergenic	-55338	NM_012486	5664	Hs.25363	XM_005273198	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
447	chr14	24822425	24824541	+	0	NA	Intergenic	L2a|LINE|L2	-12634	NM_001198967	4776	Hs.77810	XM_005267698	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	protein-coding
3258	chr7	92214032	92217039	+	0	NA	intron (NM_001040057, intron 1 of 11)	intron (NM_001040057, intron 1 of 11)	3849	NM_001288584	257415	Hs.489105	NM_001040057	ENSG00000234545	FAM133B	-	family with sequence similarity 133, member B	protein-coding
1446	chr7	142822295	142824696	+	0	NA	Intergenic	LTR24B|LTR|ERV1	-5679	NM_002652	5304	Hs.99949	NM_002652	ENSG00000159763	PIP	GCDFP-15|GCDFP15|GPIP4	prolactin-induced protein	protein-coding
4438	chr3	64425461	64427175	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-120704	NR_110151	101929335	Hs.476604	XR_245235		RP11-14D22.5	-	uncharacterized LOC101929335	ncRNA
2118	chr13	111206474	111210700	+	0	NA	intron (NM_017817, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	5484	NM_017817	55647	Hs.743563	NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
415	chr13	32518767	32520443	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	-85832	NM_023037	10129	Hs.718654	XM_005266207	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	furry homolog (Drosophila)	protein-coding
4196	chr2	72900934	72904742	+	0	NA	intron (NM_015189, intron 6 of 21)	AluJb|SINE|Alu	150339	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
3987	chr16	53850300	53852095	+	0	NA	intron (NM_001080432, intron 2 of 8)	intron (NM_001080432, intron 2 of 8)	113322	NM_001080432	79068	Hs.528833	NM_001080432		FTO	ALKBH9	fat mass and obesity associated	protein-coding
2597	chr20	36530558	36538719	+	0	NA	intron (NM_080607, intron 1 of 3)	intron (NM_080607, intron 1 of 3)	3139	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
1292	chr6	29811995	29813775	+	0	NA	Intergenic	L1MEe|LINE|L1	18129	NM_002127	3135	Hs.512152	XM_003960994	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
1356	chr6	136806839	136809119	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	-19966	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
438	chr13	114301235	114302731	+	0	NA	Intergenic	Intergenic	10530	NM_000705	496	Hs.434202	NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding
1153	chr5	42886771	42888496	+	0	NA	Intergenic	Intergenic	-75609	NM_005410	6414	Hs.745017	NM_001085486	ENSG00000250722	SEPP1	SELP|SeP	selenoprotein P, plasma, 1	protein-coding
1871	chr10	60679033	60682499	+	0	NA	Intergenic	L2a|LINE|L2	-78512	NR_108046	100507008	Hs.170953	XR_110406		LINC00844	-	long intergenic non-protein coding RNA 844	ncRNA
4569	chr4	129555441	129557896	+	0	NA	Intergenic	Intergenic	-174110	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
1022	chr4	173881714	173887937	+	0	NA	intron (NM_001034845, intron 10 of 12)	intron (NM_001034845, intron 10 of 12)	-205079	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
4463	chr3	109103284	109105592	+	0	NA	Intergenic	AluJb|SINE|Alu	-24399	NR_109842	401082	Hs.477089	NM_001145553		FLJ25363	RP11-702L6.4	uncharacterized LOC401082	ncRNA
4395	chr22	39638540	39641200	+	0	NA	intron (NM_002608, intron 1 of 6)	CpG	1087	NM_002608	5155	Hs.1976	NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
2795	chr3	113254335	113256992	+	0	NA	intron (NM_017699, intron 1 of 24)	intron (NM_017699, intron 1 of 24)	4445	NM_017699	54847	Hs.591291	XM_005247557	ENSG00000072858	SIDT1	B830021E24Rik|SID-1|SID1	SID1 transmembrane family, member 1	protein-coding
953	chr3	94647004	94648573	+	0	NA	Intergenic	Intergenic	-9319	NR_015400	255025	Hs.130994	XR_241480	ENSG00000239589	LINC00879	RP11-118N24.3	long intergenic non-protein coding RNA 879	ncRNA
4830	chr7	23395853	23398162	+	0	NA	intron (NM_006547, intron 5 of 14)	AluSq2|SINE|Alu	58067	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
1560	chrX	38429012	38430944	+	0	NA	intron (NM_004615, intron 1 of 7)	intron (NM_004615, intron 1 of 7)	9247	NM_004615	7102	Hs.441664	XM_005272646	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b	tetraspanin 7	protein-coding
3912	chr14	99844575	99846148	+	0	NA	Intergenic	Intergenic	101865	NM_032233	84193	Hs.510407	XM_005268125	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
4820	chr6	158410370	158411990	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	8292	NM_003898	8871	Hs.434494	XM_005267197	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
784	chr2	211499454	211500816	+	0	NA	intron (NM_001122634, intron 11 of 27)	intron (NM_001122634, intron 11 of 27)	17840	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	ncRNA
1762	chr1	197963206	197966142	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	78157	NM_020204	56956	Hs.706475	XM_005245349	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
260	chr11	30762250	30763456	+	0	NA	Intergenic	Intergenic	-154923	NM_001145399	744	Hs.289795	XM_005253110	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
3080	chr6	1295390	1298799	+	0	NA	Intergenic	Intergenic	-15581	NM_033260	94234	Hs.591352	NM_033260	ENSG00000164379	FOXQ1	HFH1	forkhead box Q1	protein-coding
2061	chr12	68798406	68800849	+	0	NA	Intergenic	Intergenic	-73466	NM_020128	56890	Hs.655702	XM_005269026	ENSG00000111554	MDM1	-	Mdm1 nuclear protein homolog (mouse)	protein-coding
1844	chr10	3935920	3938738	+	0	NA	Intergenic	Intergenic	-96023	NR_106726	102464829		NR_106726		MIR6078	hsa-mir-6078	microRNA mir-6078	ncRNA
762	chr2	135881819	135883915	+	0	NA	intron (NM_001172435, intron 9 of 24)	MER44B|DNA|TcMar-Tigger	73032	NM_001172435	22930	Hs.306327	NM_001172435	ENSG00000115839	RAB3GAP1	P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein subunit 1 (catalytic)	protein-coding
1144	chr5	13377837	13379142	+	0	NA	Intergenic	Intergenic	566100	NM_001369	1767	Hs.212360	XM_005248262	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
1723	chr1	147915504	147920281	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	14088	NR_027468	388685	Hs.745431	NM_207400		LINC01138	-	long intergenic non-protein coding RNA 1138	ncRNA
2047	chr12	50143685	50148993	+	0	NA	intron (NM_003217, intron 2 of 9)	intron (NM_003217, intron 2 of 9)	10747	NM_001098576	7009	Hs.743965	XM_005269126	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
144	chr1	248807629	248810735	+	0	NA	Intergenic	Intergenic	5003	NM_001001824	403239	Hs.553814	NM_001001824	ENSG00000187701	OR2T27	-	olfactory receptor, family 2, subfamily T, member 27	protein-coding
4619	chr5	44875779	44876589	+	0	NA	Intergenic	Intergenic	67157	NM_016640	10884	Hs.124165	NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
3696	chr10	103876248	103881268	+	0	NA	intron (NM_001113407, intron 1 of 10)	intron (NM_001113407, intron 1 of 10)	1452	NM_001113407	8861	Hs.454418	XM_005270262	ENSG00000198728	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
906	chr3	99759380	99762618	+	0	NA	intron (NM_001042459, intron 1 of 4)	intron (NM_001042459, intron 1 of 4)	-43940	NR_031662	100313938		NR_031662	ENSG00000221369	MIR548G	MIRN548G|hsa-mir-548g	microRNA 548g	ncRNA
2205	chr15	64924749	64929431	+	0	NA	intron (NM_015042, intron 2 of 8)	intron (NM_015042, intron 2 of 8)	68372	NM_002537	4947	Hs.744924	NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
1349	chr6	132405335	132406956	+	0	NA	Intergenic	Intergenic	-48973	NR_038981	100507254	Hs.103070	NR_038981		LINC01013	RP3-523C21.1	long intergenic non-protein coding RNA 1013	ncRNA
177	chr10	29200183	29205166	+	0	NA	Intergenic	Intergenic	67337	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
2213	chr15	73343028	73346355	+	0	NA	promoter-TSS (NM_001172624)	promoter-TSS (NM_001172624)	-134	NM_002499	4756	Hs.388613	XM_005254408	ENSG00000067141	NEO1	IGDCC2|NGN	neogenin 1	protein-coding
3346	chr9	33327019	33331234	+	0	NA	intron (NM_147133, intron 10 of 20)	MER77B|LTR|ERVL	38708	NM_147133	4799	Hs.413074	XM_005251473	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
2940	chr5	95827431	95830461	+	0	NA	Intergenic	Intergenic	-59961	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
22	chr1	5572775	5575465	+	0	NA	Intergenic	Intergenic	-50011	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
205	chr10	91034083	91035487	+	0	NA	Intergenic	Intergenic	-22989	NM_000235	3988	Hs.643030	NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid, cholesterol esterase	protein-coding
3072	chr6	141656027	141658117	+	0	NA	Intergenic	L1MEd|LINE|L1	652121	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
4345	chr20	44621570	44622895	+	0	NA	Intergenic	Intergenic	-15315	NM_004994	4318	Hs.297413	NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)	protein-coding
3213	chr7	90224782	90226860	+	0	NA	5' UTR (NM_001287135, exon 1 of 15)	5' UTR (NM_001287135, exon 1 of 15)	145	NM_001287135	5218	Hs.430742	XM_005250434	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin-dependent kinase 14	protein-coding
3296	chr8	110654721	110658308	+	0	NA	intron (NM_001099745, intron 2 of 7)	intron (NM_001099745, intron 2 of 7)	537	NM_001099753	55638	Hs.390738	XM_005250999	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
2681	chr22	31636892	31641842	+	0	NA	intron (NM_005569, intron 2 of 15)	intron (NM_005569, intron 2 of 15)	-4981	NM_001031801	3985	Hs.474596	XM_005261602	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
1260	chr6	2796955	2798857	+	0	NA	Intergenic	Intergenic	32240	NM_130395	56897	Hs.236828	XM_005249232	ENSG00000124535	WRNIP1	RP11-420G6.2|WHIP|bA420G6.2	Werner helicase interacting protein 1	protein-coding
874	chr21	36309661	36311526	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-49606	NM_001001890	861	Hs.612648	XM_005261067	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
4795	chr6	116329491	116330746	+	0	NA	intron (NM_002031, intron 1 of 7)	MER57B1|LTR|ERV1	-29776	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
493	chr15	51148701	51150955	+	0	NA	Intergenic	Intergenic	-51041	NM_007347	23431	Hs.413366	XM_005254264	ENSG00000081014	AP4E1	CPSQ4|SPG51	adaptor-related protein complex 4, epsilon 1 subunit	protein-coding
1708	chr1	85872082	85874157	+	0	NA	intron (NM_001134445, intron 2 of 6)	intron (NM_001134445, intron 2 of 6)	57770	NM_012137	23576	Hs.713411	XM_005270706	ENSG00000153904	DDAH1	DDAH|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
3719	chr11	19973121	19973872	+	0	NA	intron (NM_001244963, intron 11 of 39)	intron (NM_001244963, intron 11 of 39)	-70606	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
2220	chr15	86327509	86330885	+	0	NA	intron (NM_022480, intron 1 of 2)	intron (NM_022480, intron 1 of 2)	8992	NM_022480	64410	Hs.498371	NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch-like family member 25	protein-coding
1436	chr7	133120053	133121749	+	0	NA	intron (NM_001037126, intron 7 of 9)	intron (NM_001037126, intron 7 of 9)	145266	NR_106749	102465139		NR_106749		MIR6133	hsa-mir-6133	microRNA mir-6133	ncRNA
2528	chr2	158102156	158104285	+	0	NA	Intergenic	Intergenic	-11120	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5|GALNACT5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
1591	chrX	100511955	100513772	+	0	NA	intron (NM_001939, intron 21 of 23)	intron (NM_001939, intron 21 of 23)	33462	NM_001168474	54457	Hs.223806	XM_005262151	ENSG00000102387	TAF7L	CT40|TAF2Q	TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa	protein-coding
1677	chr1	7528757	7535454	+	0	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-299224	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
2174	chr15	93387307	93389745	+	0	NA	Intergenic	Intergenic	-37547	NR_037600	100507217	Hs.622504	NR_037600	ENSG00000272888	LOC100507217	-	uncharacterized LOC100507217	ncRNA
4699	chr5	175240219	175242590	+	0	NA	intron (NM_006650, intron 2 of 4)	intron (NM_006650, intron 2 of 4)	17794	NM_006650	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
1320	chr6	81331939	81333660	+	0	NA	Intergenic	L1M1|LINE|L1	516455	NM_183050	594	Hs.654441	XM_005248756	ENSG00000083123	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
1026	chr4	16141825	16143620	+	0	NA	Intergenic	Intergenic	-57099	NM_001145848	8842	Hs.614734	XM_005248194	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|PROML1|RP41|STGD4	prominin 1	protein-coding
4493	chr3	151022453	151023713	+	0	NA	intron (NM_023915, intron 1 of 2)	intron (NM_023915, intron 1 of 2)	11553	NM_023915	53836	Hs.591292	NM_023915	ENSG00000138271	GPR87	GPR95|KPG_002	G protein-coupled receptor 87	protein-coding
2752	chr3	55520325	55523152	+	0	NA	promoter-TSS (NM_003392)	promoter-TSS (NM_003392)	-68	NM_003392	7474	Hs.643085	NM_001256105	ENSG00000114251	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
1390	chr7	15124421	15126206	+	0	NA	Intergenic	Intergenic	-244238	NM_004080	1607	Hs.567255	XM_005249628	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase, beta 90kDa	protein-coding
1993	chr12	20034820	20040093	+	0	NA	Intergenic	Intergenic	-130163	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
3544	chr1	169538657	169539897	+	0	NA	intron (NM_000130, intron 3 of 24)	intron (NM_000130, intron 3 of 24)	16492	NM_000130	2153	Hs.30054	NM_000130		F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V (proaccelerin, labile factor)	protein-coding
1469	chr8	79933236	79934833	+	0	NA	Intergenic	Intergenic	-216276	NM_001199887	3574	Hs.591873	NM_000880	ENSG00000104432	IL7	IL-7	interleukin 7	protein-coding
1499	chr9	96091834	96093201	+	0	NA	intron (NM_001098808, intron 3 of 4)	intron (NM_001098808, intron 3 of 4)	16179	NM_001098808	445577	Hs.575636	NM_001098808	ENSG00000204352	C9orf129	bA165J3.3	chromosome 9 open reading frame 129	protein-coding
4674	chr5	140380803	140385265	+	0	NA	intron (NM_018904, intron 3 of 3)	AluSz|SINE|Alu	36682	NM_031883	56134	Hs.199343	NM_018899	ENSG00000243232	PCDHAC2	PCDH-ALPHA-C2	protocadherin alpha subfamily C, 2	protein-coding
400	chr12	120058510	120061038	+	0	NA	intron (NM_001136534, intron 1 of 2)	intron (NM_001136534, intron 1 of 2)	28510	NM_001136534	387890	Hs.530965	XM_005253880	ENSG00000224982	TMEM233	DSPB2|IFITMD2	transmembrane protein 233	protein-coding
919	chr3	14920088	14921507	+	0	NA	intron (NM_152536, intron 2 of 19)	intron (NM_152536, intron 2 of 19)	60328	NM_152536	152273	Hs.412406	XM_005264900	ENSG00000154783	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
1268	chr6	11262616	11264628	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-30707	NM_001271033	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
633	chr19	41467730	41469985	+	0	NA	Intergenic	Intergenic	-28347	NM_000767	1555	Hs.1360	XM_005258569	ENSG00000197408	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450, family 2, subfamily B, polypeptide 6	protein-coding
1372	chr6	150724099	150725529	+	0	NA	3' UTR (NM_001164695, exon 6 of 6)	3' UTR (NM_001164695, exon 6 of 6)	34786	NM_001164695	389434	Hs.310225	XM_005266977	ENSG00000009765	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
1977	chr11	122307832	122313356	+	0	NA	Intergenic	Intergenic	-215804	NM_032873	84959	Hs.444075	XM_005271712	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
2023	chr12	8832858	8836984	+	0	NA	Intergenic	Intergenic	-15597	NM_020734	57494	Hs.504670	XM_005253435	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK-like family member B	protein-coding
4387	chr22	27634872	27636308	+	0	NA	Intergenic	Intergenic	561896	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
3445	chr1	7322431	7324480	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	478071	NR_038934	23261	Hs.671020	NM_001195563	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
1669	chr1	245316290	245320897	+	0	NA	5' UTR (NM_018012, exon 1 of 15)	5' UTR (NM_018012, exon 1 of 15)	306	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
1825	chr10	52361494	52368652	+	0	NA	intron (NM_147156, intron 1 of 10)	MamRep1879|DNA|hAT?	18664	NM_147156	259230	Hs.654698	XM_005269675	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
1285	chr6	21948886	21952432	+	0	NA	intron (NR_015410, intron 5 of 11)	AluSc|SINE|Alu	196763	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
3309	chr8	101425459	101431584	+	0	NA	Intergenic	Intergenic	33530	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
3594	chr1	219482783	219484462	+	0	NA	Intergenic	Intergenic	136430	NM_138794	127018	Hs.657617	XM_005273046	ENSG00000143353	LYPLAL1	-	lysophospholipase-like 1	protein-coding
3757	chr12	15941002	15943306	+	0	NA	5' UTR (NM_004447, exon 1 of 21)	5' UTR (NM_004447, exon 1 of 21)	356	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
1549	chrX	46595960	46597116	+	0	NA	intron (NM_001257291, intron 1 of 16)	intron (NM_001257291, intron 1 of 16)	22069	NM_032591	84679	Hs.91389	XM_005272680		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
1959	chr11	73992814	74000696	+	0	NA	intron (NR_110031, intron 7 of 11)	intron (NR_110031, intron 7 of 11)	25966	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
1242	chr6	13483828	13485250	+	0	NA	intron (NM_001242629, intron 1 of 1)	intron (NM_001242629, intron 1 of 1)	1876	NM_001242628	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
1208	chr5	144597141	144599527	+	0	NA	Intergenic	L1ME4a|LINE|L1	616598	NM_138492	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
1874	chr10	63841136	63844923	+	0	NA	intron (NM_032199, intron 8 of 9)	intron (NM_032199, intron 8 of 9)	34059	NM_001244638	84159	Hs.535297	XM_005270215	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
1803	chr1	233841974	233844671	+	0	NA	Intergenic	Intergenic	83424	NR_039625	100616390		NR_039625		MIR4427	-	microRNA 4427	ncRNA
3542	chr1	168769383	168770135	+	0	NA	Intergenic	L2c|LINE|L2	13580	NR_024160	79100	Hs.250624	NR_024160	ENSG00000225826	LINC00626	RP1-10C16.2	long intergenic non-protein coding RNA 626	ncRNA
1201	chr5	131957445	131959473	+	0	NA	intron (NM_005732, intron 21 of 24)	L1ME3F|LINE|L1	-35406	NM_002188	3596	Hs.845	NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
519	chr15	71005213	71007736	+	0	NA	intron (NM_018003, intron 1 of 18)	intron (NM_018003, intron 1 of 18)	-11854	NM_001008224	55075	Hs.108049	XM_005254527	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
3300	chr8	37547980	37550200	+	0	NA	Intergenic	L2c|LINE|L2	-4211	NM_025069	80139	Hs.744591	NM_025069		ZNF703	ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
17	chr1	245396984	245399699	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	80054	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
4092	chr18	52767368	52769441	+	0	NA	Intergenic	Intergenic	-141665	NM_025214	80323	Hs.120790	XM_005266771	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
2451	chr2	33444166	33446582	+	0	NA	intron (NM_000627, intron 4 of 29)	intron (NM_000627, intron 4 of 29)	85710	NM_001166266	4052	Hs.619315	XM_005264315	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
3337	chr9	137557564	137564850	+	0	NA	intron (NM_001278074, intron 1 of 65)	(TCCA)n|Simple_repeat|Simple_repeat	27556	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	collagen, type V, alpha 1	protein-coding
1274	chr6	15763078	15765743	+	0	NA	Intergenic	Intergenic	-101121	NM_001271669	84062	Hs.571148	XM_005249447	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
110	chr1	183796171	183797928	+	0	NA	intron (NM_015149, intron 3 of 18)	intron (NM_015149, intron 3 of 18)	-174601	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
4861	chr7	67786020	67786737	+	0	NA	Intergenic	Intergenic	985415	NR_108104	101929736	Hs.634050	XR_242296		RP11-166O4.5	-	uncharacterized LOC101929736	ncRNA
2356	chr18	52766908	52769883	+	0	NA	Intergenic	Intergenic	-141656	NM_025214	80323	Hs.120790	XM_005266771	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
4721	chr6	1054359	1055311	+	0	NA	intron (NR_027116, intron 1 of 3)	intron (NR_027116, intron 1 of 3)	46732	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
2210	chr15	69864429	69872743	+	0	NA	Intergenic	Intergenic	14527	NR_026979	145837	Hs.737088	XR_243079		RP11-279F6.1	-	uncharacterized LOC145837	ncRNA
3700	chr10	112624528	112626257	+	0	NA	Intergenic	Intergenic	5270	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
2658	chr21	44757451	44767420	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-10516	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	AP001046.4|C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
646	chr19	42513519	42515486	+	0	NA	intron (NM_002088, intron 14 of 18)	L1MEc|LINE|L1	-16074	NM_152296	478	Hs.515427	XM_005258953	ENSG00000105409	ATP1A3	AHC2|DYT12|RDP	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding
4005	chr16	75540044	75541387	+	0	NA	Intergenic	Intergenic	-11789	NM_021615	4166	Hs.655622	XM_005255955		CHST6	MCDC1	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6	protein-coding
1220	chr5	153466416	153468229	+	0	NA	Intergenic	Intergenic	48803	NM_001135037	4238	Hs.432818	XM_005268450	ENSG00000037749	MFAP3	-	microfibrillar-associated protein 3	protein-coding
3663	chr10	61731517	61732537	+	0	NA	Intergenic	L2a|LINE|L2	-11356	NR_024340	283025	Hs.522955	XR_246084	ENSG00000235931	C10orf40	-	chromosome 10 open reading frame 40	ncRNA
2652	chr20	62465008	62467326	+	0	NA	Intergenic	Intergenic	-26399	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
4263	chr2	234352214	234354023	+	0	NA	intron (NM_003648, intron 9 of 28)	intron (NM_003648, intron 9 of 28)	56318	NM_003648	8527	Hs.471675	XM_005246107	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
2337	chr18	25665809	25668318	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	90382	NM_001792	1000	Hs.606106	XM_005258181	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
4626	chr5	66186815	66187764	+	0	NA	intron (NM_015183, intron 1 of 27)	L2|LINE|L2	62685	NM_015183	375449	Hs.595458	XM_005248498	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
5014	chrX	106958807	106961099	+	0	NA	promoter-TSS (NM_001015881)	promoter-TSS (NM_001015881)	-242	NM_001015881	1831	Hs.522074	XM_005262098	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
2243	chr16	2895752	2898180	+	0	NA	Intergenic	MER87|LTR|ERV1	-4214	NR_026864	124221	Hs.434388	NM_178453	ENSG00000172460	PRSS30P	Disp|TMPRSS8|TMPRSS8P	protease, serine, 30, pseudogene	pseudo
1087	chr4	90117010	90118997	+	0	NA	Intergenic	Intergenic	84035	NM_145715	166815	Hs.58924	XM_005262789	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
1288	chr6	22081773	22083274	+	0	NA	intron (NR_015410, intron 8 of 11)	MIR|SINE|MIR	64899	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
810	chr20	39190223	39192964	+	0	NA	Intergenic	Intergenic	126287	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
4351	chr20	50526938	50527746	+	0	NA	Intergenic	Intergenic	-47890	NR_110016	101927678	Hs.683840	XR_244196	ENSG00000227964	RP5-1112F19.2	-	uncharacterized LOC101927678	ncRNA
4166	chr2	38023088	38023730	+	0	NA	Intergenic	Intergenic	33445	NR_110011	101929559	Hs.722926	XR_244986	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
33	chr1	21594342	21597827	+	0	NA	intron (NM_001113347, intron 2 of 16)	MIRb|SINE|MIR	10099	NM_001113347	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
1587	chrX	76261910	76264144	+	0	NA	Intergenic	L1PA15|LINE|L1	-123242	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
4256	chr2	218251590	218253926	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	368558	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
227	chr11	85458812	85460924	+	0	NA	intron (NM_032943, intron 2 of 18)	MIR|SINE|MIR	9176	NM_001162951	54843	Hs.369520	XM_005274057	ENSG00000137501	SYTL2	CHR11SYT|EXO4|SGA72M|SLP2|SLP2A	synaptotagmin-like 2	protein-coding
4829	chr7	142868280	142870140	+	0	NA	Intergenic	Intergenic	-11302	NM_176881	259285	Hs.553660	NM_176881	ENSG00000236398	TAS2R39	T2R39|T2R57	taste receptor, type 2, member 39	protein-coding
1860	chr10	25250416	25253525	+	0	NA	Intergenic	Intergenic	-10397	NM_001282786	56952	Hs.405619	XM_005252537	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
4577	chr4	143766730	143768591	+	0	NA	promoter-TSS (NM_003866)	promoter-TSS (NM_003866)	-56	NM_001101669	8821	Hs.531403	XM_005263322	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
2013	chr12	102956004	102957748	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-82498	NM_001111283	3479	Hs.160562	XM_005268835	ENSG00000017427	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
264	chr11	39268046	39269333	+	0	NA	Intergenic	Intergenic	1045991	NR_047674	57689	Hs.745123	XM_005253030	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
806	chr2	240850125	240852143	+	0	NA	Intergenic	Intergenic	31377	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	-	microRNA 4786	ncRNA
4960	chr9	86152397	86154443	+	0	NA	promoter-TSS (NM_174938)	promoter-TSS (NM_174938)	-72	NM_174938	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4477	chr3	112470482	112472071	+	0	NA	Intergenic	LTR22A|LTR|ERVK	-3110	NR_110017	101929694	Hs.385630	XR_241545	ENSG00000240893	RP11-572C15.5	-	uncharacterized LOC101929694	ncRNA
1885	chr10	77844957	77847749	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	303834	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
4899	chr8	22838480	22841709	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4836	NM_001160036	23221	Hs.372688	NM_001160036	ENSG00000008853	RHOBTB2	DBC2	Rho-related BTB domain containing 2	protein-coding
2905	chr4	141660973	141665853	+	0	NA	intron (NM_015130, intron 1 of 20)	AluSg4|SINE|Alu	14058	NM_015130	23158	Hs.595450	NM_015130	ENSG00000109436	TBC1D9	MDR1	TBC1 domain family, member 9 (with GRAM domain)	protein-coding
1817	chr10	12366584	12378342	+	0	NA	Intergenic	MIRb|SINE|MIR	-19120	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
2707	chr3	4865138	4875704	+	0	NA	intron (NM_001099952, intron 57 of 58)	intron (NM_001099952, intron 57 of 58)	-77147	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
4854	chr7	32098946	32100143	+	0	NA	intron (NM_005020, intron 2 of 17)	intron (NM_005020, intron 2 of 17)	10922	NM_001191057	5137	Hs.728862	XM_005249766	ENSG00000154678	PDE1C	Hcam3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
556	chr16	65996848	66001995	+	0	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-389218	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
3998	chr16	66772958	66776866	+	0	NA	intron (NM_001286157, intron 3 of 11)	L2a|LINE|L2	10613	NM_006141	1783	Hs.369068	XM_005255831	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein, cytoplasmic 1, light intermediate chain 2	protein-coding
717	chr2	67672508	67674850	+	0	NA	Intergenic	Intergenic	49237	NM_019002	54465	Hs.353022	XM_005264374	ENSG00000143971	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
2817	chr3	160046982	160050696	+	0	NA	intron (NM_020800, intron 8 of 19)	Tigger7|DNA|TcMar-Tigger	52715	NM_001190242	57560	Hs.478095	XM_005247673	ENSG00000068885	IFT80	ATD2|WDR56	intraflagellar transport 80 homolog (Chlamydomonas)	protein-coding
671	chr2	37645	38651	+	0	NA	TTS (NM_001077710)	TTS (NM_001077710)	8440	NM_001077710	642273	Hs.8379	XM_005264697		FAM110C	-	family with sequence similarity 110, member C	protein-coding
1511	chr9	18564852	18567648	+	0	NA	intron (NM_001040272, intron 3 of 28)	intron (NM_001040272, intron 3 of 28)	-7054	NR_036107	100422869		NR_036107		MIR3152	-	microRNA 3152	ncRNA
2249	chr16	53850014	53852243	+	0	NA	intron (NM_001080432, intron 2 of 8)	intron (NM_001080432, intron 2 of 8)	113253	NM_001080432	79068	Hs.528833	NM_001080432		FTO	ALKBH9	fat mass and obesity associated	protein-coding
3353	chr9	38440141	38444647	+	0	NA	Intergenic	Intergenic	-17950	NM_001007563	347252	Hs.349705	NM_001007563		IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
2423	chr2	227049123	227052285	+	0	NA	Intergenic	Intergenic	43194	NR_046102	646736	Hs.712836	XR_241316		LOC646736	-	uncharacterized LOC646736	ncRNA
1605	chrX	134523087	134524722	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-6450	NR_104652	100506790	Hs.161358	XR_109776	ENSG00000229015	LOC100506790	-	uncharacterized LOC100506790	ncRNA
663	chr2	175487125	175490164	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	10663	NM_003387	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
4301	chr20	1789425	1792467	+	0	NA	Intergenic	L2a|LINE|L2	-30554	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
2431	chr2	7004917	7006956	+	0	NA	promoter-TSS (NM_001256478)	promoter-TSS (NM_001256478)	14	NM_207315	129607	Hs.7155	NM_001256477	ENSG00000134326	CMPK2	TMPK2|TYKi|UMP-CMPK2	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
1945	chr11	20130999	20135536	+	0	NA	intron (NM_001244963, intron 38 of 39)	intron (NM_001244963, intron 38 of 39)	48603	NM_001029865	120237	Hs.558604	NM_001029865	ENSG00000109851	DBX1	-	developing brain homeobox 1	protein-coding
4326	chr20	18232095	18234726	+	0	NA	Intergenic	Intergenic	-35517	NM_001282996	7692	Hs.472221	XM_005260813	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
969	chr3	120152359	120156069	+	0	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	15704	NM_007085	11167	Hs.269512	XM_005247083		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
4295	chr20	36613680	36620516	+	0	NA	intron (NM_014657, intron 8 of 8)	intron (NM_014657, intron 8 of 8)	44735	NM_014657	9675	Hs.655481	XM_005260621	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
1946	chr11	28635875	28639146	+	0	NA	Intergenic	MIR3|SINE|MIR	-138415	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
2276	chr17	60895743	60903192	+	0	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-13725	NM_152598	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
4207	chr2	99894747	99895910	+	0	NA	Intergenic	Intergenic	22311	NM_174898	129530	Hs.164589	XM_005263869	ENSG00000144214	LYG1	SALW1939	lysozyme G-like 1	protein-coding
4089	chr18	47720850	47721554	+	0	NA	5' UTR (NM_001080467, exon 1 of 40)	5' UTR (NM_001080467, exon 1 of 40)	249	NM_001080467	4645	Hs.720076	XM_005258276	ENSG00000167306	MYO5B	-	myosin VB	protein-coding
1501	chr9	100971886	100975468	+	0	NA	intron (NM_001267571, intron 7 of 12)	L2b|LINE|L2	2156	NM_001267572	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
4808	chr6	136870621	136871776	+	0	NA	intron (NM_001198617, intron 1 of 15)	CpG	759	NM_001198617	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
549	chr16	65351892	65353308	+	0	NA	intron (NR_027755, intron 7 of 8)	intron (NR_027755, intron 7 of 8)	-196681	NM_001797	1009	Hs.116471	XM_005255761		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
3465	chr1	234699763	234701477	+	0	NA	Intergenic	Intergenic	-33095	NR_038426	100506795	Hs.448989	XR_247017	ENSG00000231768	RP5-855F14.1	-	uncharacterized LOC100506795	ncRNA
3629	chr10	64192488	64193956	+	0	NA	intron (NM_199450, intron 3 of 4)	intron (NM_199450, intron 3 of 4)	-58336	NR_104162	283045		XR_246118		LOC283045	-	uncharacterized LOC283045	ncRNA
3930	chr15	50144129	50146705	+	0	NA	Intergenic	Intergenic	232191	NM_020234	56986	Hs.127432	XM_005254560	ENSG00000104047	DTWD1	-	DTW domain containing 1	protein-coding
946	chr3	57694364	57695978	+	0	NA	Intergenic	Intergenic	-16355	NM_152678	201627	Hs.91085	XM_005264943	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN/MADD domain containing 6A	protein-coding
2644	chr20	45752302	45757207	+	0	NA	intron (NM_172110, intron 9 of 13)	intron (NM_172110, intron 9 of 13)	-40855	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
1361	chr6	136859334	136861599	+	0	NA	intron (NM_001198617, intron 1 of 15)	MIR|SINE|MIR	11491	NM_001198617	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
3864	chr13	52375593	52376368	+	0	NA	intron (NM_001031719, intron 1 of 7)	intron (NM_001031719, intron 1 of 7)	2318	NM_001031719	79758	Hs.266728	XM_005266526	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase (SDR family) member 12	protein-coding
3155	chr6	108322347	108325470	+	0	NA	Intergenic	Intergenic	-44426	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
3773	chr12	12037631	12039385	+	0	NA	intron (NM_001987, intron 6 of 7)	intron (NM_001987, intron 6 of 7)	40599	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19P	RNU6-19	RNA, U6 small nuclear 19, pseudogene	snRNA
3280	chr7	134103756	134110762	+	0	NA	Intergenic	Intergenic	36629	NM_001628	231	Hs.521212	XM_005250234	ENSG00000085662	AKR1B1	ADR|ALDR1|ALR2|AR	aldo-keto reductase family 1, member B1 (aldose reductase)	protein-coding
1465	chr8	52579694	52581205	+	0	NA	intron (NM_144651, intron 1 of 22)	intron (NM_144651, intron 1 of 22)	141556	NM_144651	137902	Hs.444882	XM_005251167	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
2990	chr5	94619163	94621551	+	0	NA	promoter-TSS (NM_024717)	promoter-TSS (NM_024717)	-78	NM_024717	79772	Hs.655087	XM_005272082	ENSG00000175471	MCTP1	-	multiple C2 domains, transmembrane 1	protein-coding
1397	chr7	29451163	29454523	+	0	NA	intron (NM_004067, intron 6 of 12)	intron (NM_004067, intron 6 of 12)	-66643	NM_001039936	1124	Hs.710429	XM_005249597	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
3678	chr10	76967954	76968804	+	0	NA	Intergenic	Intergenic	-1533	NM_001184823	7417	Hs.355927	NM_001184783	ENSG00000165637	VDAC2	POR	voltage-dependent anion channel 2	protein-coding
941	chr3	47568792	47570734	+	0	NA	Intergenic	L1M4b|LINE|L1	-14564	NM_001031703	54859	Hs.311100	XM_005265240	ENSG00000163832	ELP6	C3orf75|TMEM103	elongator acetyltransferase complex subunit 6	protein-coding
583	chr17	40775034	40777380	+	0	NA	Intergenic	Intergenic	-14762	NM_178126	162427	Hs.632262	NM_178126	ENSG00000141699	FAM134C	-	family with sequence similarity 134, member C	protein-coding
4848	chr7	29648253	29649984	+	0	NA	Intergenic	Intergenic	45691	NM_175887	222171	Hs.91109	XM_005249653	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
3436	chrX	151038370	151041501	+	0	NA	Intergenic	Intergenic	-41426	NM_001011548	4103	Hs.37107	XM_005274677	ENSG00000147381	MAGEA4	CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B	melanoma antigen family A, 4	protein-coding
1869	chr10	47160097	47166537	+	0	NA	intron (NM_001040084, intron 9 of 11).2	intron (NM_001040084, intron 9 of 11).2	10826	NM_001040084	653145	Hs.744068	XR_246202	ENSG00000165390	ANXA8	ANX8	annexin A8	protein-coding
3190	chr6	155447279	155449371	+	0	NA	intron (NM_012454, intron 1 of 25)	MamSINE1|SINE|tRNA	36902	NM_012454	26230	Hs.586279	XM_005266927	ENSG00000146426	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
591	chr17	69489650	69491676	+	0	NA	Intergenic	Intergenic	-292343	NR_104152	101928165	Hs.407613	XR_243749	ENSG00000260785	CASC17	LINC00600|RP11-879D6.1	cancer susceptibility candidate 17 (non-protein coding)	ncRNA
2304	chr17	60264843	60267094	+	0	NA	Intergenic	AluSx1|SINE|Alu	87048	NR_027486	440452	Hs.448884	NR_027486	ENSG00000188755	TBC1D3P2	-	TBC1 domain family, member 3 pseudogene 2	pseudo
3846	chr12	130620185	130623468	+	0	NA	Intergenic	Intergenic	24397	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
3481	chr1	21664965	21666150	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	6477	NM_001113348	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
2804	chr3	137799920	137803331	+	0	NA	intron (NM_173543, intron 8 of 15)	MLT1J|LTR|ERVL-MaLR	30697	NM_001170538	199221	Hs.351403	XM_005247198	ENSG00000158163	DZIP1L	DZIP2	DAZ interacting zinc finger protein 1-like	protein-coding
2341	chr18	29951326	29954474	+	0	NA	intron (NM_001242409, intron 2 of 5)	intron (NM_001242409, intron 2 of 5)	97547	NM_022751	64762	Hs.444314	XM_005258328	ENSG00000141441	GAREM	C18orf11|FAM59A|Gm944	GRB2 associated, regulator of MAPK1	protein-coding
3583	chr1	208375686	208377889	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	40878	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
4078	chr18	45447470	45448519	+	0	NA	intron (NM_001003652, intron 1 of 10)	intron (NM_001003652, intron 1 of 10)	8976	NM_005901	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
4149	chr2	27232558	27234664	+	0	NA	intron (NM_012326, intron 1 of 6)	intron (NM_012326, intron 1 of 6)	-22163	NM_001083590	54867	Hs.533934	XM_005264381	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
4990	chr9	130910745	130912233	+	0	NA	promoter-TSS (NM_005564)	promoter-TSS (NM_005564)	-243	NM_005564	3934	Hs.204238	NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL	lipocalin 2	protein-coding
102	chr1	180548552	180550509	+	0	NA	Intergenic	Intergenic	-51616	NM_001135669	9213	Hs.227656	NM_001135669	ENSG00000143324	XPR1	SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
1920	chr11	17561871	17566255	+	0	NA	intron (NM_153676, intron 1 of 26)	intron (NM_153676, intron 1 of 26)	1900	NM_153676	10083	Hs.502072	XM_005252725	ENSG00000006611	USH1C	AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst	Usher syndrome 1C (autosomal recessive, severe)	protein-coding
3827	chr12	96440618	96442776	+	0	NA	Intergenic	Intergenic	-4399	NM_001256644	4048	Hs.524648	XM_005268871	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
4589	chr4	178242635	178244863	+	0	NA	intron (NM_018248, intron 2 of 9)	intron (NM_018248, intron 2 of 9)	12758	NM_018248	55247	Hs.405467	NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|hFPG2|hNEI3	nei endonuclease VIII-like 3 (E. coli)	protein-coding
2992	chr5	95176857	95180377	+	0	NA	Intergenic	Intergenic	-9319	NR_026936	202299	Hs.8373	NM_175616	ENSG00000236882	C5orf27	FIS	chromosome 5 open reading frame 27	ncRNA
4942	chr9	34072154	34074538	+	0	NA	Intergenic	MIRc|SINE|MIR	-24399	NM_018449	55833	Hs.493739	XM_005251504	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
2639	chr20	43009490	43016003	+	0	NA	intron (NR_109949, intron 3 of 3)	AluSp|SINE|Alu	11600	NR_109949	101927219	Hs.655919	XR_244181	ENSG00000229005	HNF4A-AS1	RP5-881L22.4|uc002xlx	HNF4A antisense RNA 1	ncRNA
4227	chr2	134430998	134432928	+	0	NA	Intergenic	Intergenic	-105932	NM_207363	344148	Hs.537329	XM_005263659	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
3483	chr1	26192759	26194811	+	0	NA	intron (NM_178422, intron 1 of 1)	AluJr|SINE|Alu	3959	NM_178422	164091	Hs.523652	XM_005245745	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member VII	protein-coding
1218	chr5	152824558	152826674	+	0	NA	Intergenic	Intergenic	-44468	NM_001258019	2890	Hs.737709	NM_000827	ENSG00000155511	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
4409	chr3	5238729	5240234	+	0	NA	intron (NM_014674, intron 2 of 11)	intron (NM_014674, intron 2 of 11)	10122	NM_014674	9695	Hs.224616	XR_245168	ENSG00000134109	EDEM1	EDEM	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
2398	chr2	134080940	134088038	+	0	NA	intron (NM_207363, intron 3 of 19)	MER5A|DNA|hAT-Charlie	60722	NR_110294	101928161	Hs.661917	XR_244858	ENSG00000226953	AC010890.1	-	uncharacterized LOC101928161	ncRNA
259	chr11	29194549	29196063	+	0	NA	Intergenic	Intergenic	-696211	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
1625	chr1	21642622	21657717	+	0	NA	intron (NM_001113348, intron 1 of 18)	L2a|LINE|L2	21865	NM_001113348	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
163	chr10	19041313	19043541	+	0	NA	Intergenic	LTR9|LTR|ERV1	94114	NM_178815	221079	Hs.594569	XM_005252400	ENSG00000165997	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
4070	chr18	11120174	11120777	+	0	NA	intron (NM_022068, intron 1 of 51)	intron (NM_022068, intron 1 of 51)	28286	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
3898	chr14	70114832	70116028	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	37120	NM_014734	9766	Hs.440025	XM_005268241	ENSG00000100647	KIAA0247	-	KIAA0247	protein-coding
1106	chr4	150930966	150932511	+	0	NA	Intergenic	Intergenic	-67688	NM_001040260	166614	Hs.591683	XM_005262785	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
1836	chr10	79657129	79660617	+	0	NA	intron (NM_004747, intron 1 of 31)	intron (NM_004747, intron 1 of 31)	27475	NM_004747	9231	Hs.652690	XM_005270276	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
1531	chr9	78870547	78871757	+	0	NA	intron (NM_001190482, intron 24 of 36)	intron (NM_001190482, intron 24 of 36)	138292	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
2731	chr3	5235308	5241245	+	0	NA	intron (NM_014674, intron 2 of 11)	MIR3|SINE|MIR	8917	NM_014674	9695	Hs.224616	XR_245168	ENSG00000134109	EDEM1	EDEM	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
3976	chr16	57650120	57660127	+	0	NA	intron (NM_005682, intron 1 of 14)	intron (NM_005682, intron 1 of 14)	1213	NM_001145770	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
2929	chr5	5176958	5180743	+	0	NA	intron (NM_139056, intron 3 of 22)	intron (NM_139056, intron 3 of 22)	38407	NM_139056	170690	Hs.661915	NM_139056	ENSG00000145536	ADAMTS16	ADAMTS16s	ADAM metallopeptidase with thrombospondin type 1 motif, 16	protein-coding
2738	chr3	27718221	27720026	+	0	NA	Intergenic	Intergenic	45083	NM_001278182	8320	Hs.734211	XM_005265509	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
1333	chr6	113011243	113013516	+	0	NA	Intergenic	Intergenic	343847	NM_001013734	442247	Hs.448264	NM_001013734	ENSG00000251258	RFPL4B	RNF211|RP11-506B6.6	ret finger protein-like 4B	protein-coding
2770	chr3	96553982	96556678	+	0	NA	intron (NM_001080448, intron 1 of 17)	MIRc|SINE|MIR	21905	NM_001278301	285220	Hs.653244	NM_001080448	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
3859	chr13	34609441	34610888	+	0	NA	Intergenic	Intergenic	217958	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
3087	chr6	4312963	4314543	+	0	NA	Intergenic	L1M3f|LINE|L1	177447	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	RP3-400B16.1	-	uncharacterized LOC100507506	ncRNA
442	chr14	76167697	76169797	+	0	NA	intron (NM_015072, intron 7 of 31)	intron (NM_015072, intron 7 of 31)	41196	NM_015072	23093	Hs.709609	XM_005267438	ENSG00000119685	TTLL5	KIAA0998|STAMP	tubulin tyrosine ligase-like family, member 5	protein-coding
4044	chr17	55612007	55614427	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	209473	NM_001282544	101927581	Hs.540784	XM_005257905	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
4492	chr3	149453313	149454841	+	0	NA	Intergenic	Intergenic	16209	NM_016094	51122	Hs.432729	XR_241494	ENSG00000114744	COMMD2	-	COMM domain containing 2	protein-coding
2156	chr14	92218738	92224463	+	0	NA	Intergenic	Intergenic	-23187	NM_024764	79820	Hs.131755	XM_005268066	ENSG00000133962	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
1577	chrX	76015995	76017971	+	0	NA	Intergenic	LTR18A|LTR|ERVL	122802	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
1572	chrX	63140476	63142854	+	0	NA	Intergenic	Intergenic	-135698	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468	microRNA 1468	ncRNA
2851	chr4	169556565	169559185	+	0	NA	intron (NM_001166109, intron 1 of 18)	Plat_L3|LINE|CR1	5107	NM_001166109	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
886	chr21	44745419	44747580	+	0	NA	intron (NR_103713, intron 1 of 2)	intron (NR_103713, intron 1 of 2)	5420	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	AP001046.4|C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
4984	chr9	123539992	123541854	+	0	NA	intron (NM_012164, intron 3 of 7)	intron (NM_012164, intron 3 of 7)	14817	NM_012164	26190	Hs.494985	XM_005251908	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
4733	chr6	9141099	9141921	+	0	NA	Intergenic	Intergenic	489068	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
2835	chr4	41359672	41370054	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	2061	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
1329	chr6	110857704	110859356	+	0	NA	Intergenic	Intergenic	-60686	NM_033125	85413	Hs.520319	XM_005267183	ENSG00000004809	SLC22A16	CT2|FLIPT2|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 (organic cation/carnitine transporter), member 16	protein-coding
3728	chr11	31005662	31006986	+	0	NA	intron (NM_020869, intron 1 of 19)	intron (NM_020869, intron 1 of 19)	7909	NM_020869	100506627	Hs.730375	NM_198462		DCDC5	-	doublecortin domain containing 5	protein-coding
4186	chr2	65201351	65203254	+	0	NA	Intergenic	L1MC3|LINE|L1	-13277	NM_001193493	6509	Hs.654352	NM_001135581	ENSG00000115902	SLC1A4	ASCT1|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding
3568	chr1	201235505	201236822	+	0	NA	Intergenic	Intergenic	-16417	NM_001005337	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)	protein-coding
3243	chr7	44581690	44584363	+	0	NA	Intergenic	L1ME4a|LINE|L1	-2112	NM_013389	29881	Hs.567486	XM_005249723	ENSG00000015520	NPC1L1	NPC11L1	NPC1-like 1	protein-coding
3777	chr12	15815023	15815773	+	0	NA	intron (NM_004447, intron 8 of 20)	intron (NM_004447, intron 8 of 20)	116120	NM_030668	5800	Hs.160871	NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
320	chr12	54492758	54495510	+	0	NA	intron (NR_026655, intron 1 of 1)	intron (NR_026655, intron 1 of 1)	-1859	NR_026657	100240734	Hs.634954	NR_026657		LOC100240734	-	uncharacterized LOC100240734	ncRNA
3528	chr1	151557114	151559283	+	0	NA	Intergenic	Intergenic	-26464	NM_030918	81609	Hs.192326	XM_005245509	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
3756	chr12	8042658	8044695	+	0	NA	exon (NM_001286237, exon 1 of 10)	exon (NM_001286237, exon 1 of 10)	116	NM_001286237	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
811	chr20	55180316	55182558	+	0	NA	Intergenic	L2a|LINE|L2	-22921	NM_003222	7022	Hs.473152	XM_005260537	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
465	chr14	62391256	62397235	+	0	NA	Intergenic	Intergenic	-68296	NM_031914	83851	Hs.404139	XM_005268123	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r|yt14r	synaptotagmin XVI	protein-coding
249	chr11	15074009	15075935	+	0	NA	Intergenic	Intergenic	-20174	NM_000728	797	Hs.534305	XM_005253135	ENSG00000175868	CALCB	CALC2|CGRP-II|CGRP2	calcitonin-related polypeptide beta	protein-coding
1612	chrY	24590747	24592402	+	0	NA	Intergenic	Intergenic	-3968	NR_001527	84672	Hs.535085	XR_244582	ENSG00000131538	TTTY6	LINC00127|NCRNA00127|TTTY6A|TTY6	testis-specific transcript, Y-linked 6 (non-protein coding)	ncRNA
819	chr20	1796112	1800723	+	0	NA	Intergenic	MIRb|SINE|MIR	-38025	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
1177	chr5	93575593	93577872	+	0	NA	intron (NM_001145678, intron 20 of 20)	intron (NM_001145678, intron 20 of 20)	-129328	NM_001163418	83989	Hs.600086	XM_005272103	ENSG00000113391	FAM172A	C5orf21	family with sequence similarity 172, member A	protein-coding
1189	chr5	113111903	113113849	+	0	NA	Intergenic	MER51A|LTR|ERV1	263485	NM_022828	64848	Hs.231942	XM_005272052	ENSG00000047188	YTHDC2	CAHL	YTH domain containing 2	protein-coding
3680	chr10	78012245	78013047	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	470127	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
1748	chr1	182365429	182368107	+	0	NA	TTS (NM_172000)	TTS (NM_172000)	2983	NM_172000	127670	Hs.156977	NM_172000	ENSG00000203730	TEDDM1	EDDM9|Epdd1|HE9|RP1-223H12.2|TMEM45C	transmembrane epididymal protein 1	protein-coding
2127	chr14	96714521	96716661	+	0	NA	Intergenic	Intergenic	-6956	NM_000710	623	Hs.525572	XM_005267977	ENSG00000100739	BDKRB1	B1BKR|B1R|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
858	chr20	42602694	42604780	+	0	NA	intron (NM_001098797, intron 2 of 8)	intron (NM_001098797, intron 2 of 8)	29201	NM_001098798	84969	Hs.26608	XM_005260585	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
3768	chr12	130612406	130613314	+	0	NA	Intergenic	Intergenic	33363	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
385	chr12	92324360	92325903	+	0	NA	Intergenic	Intergenic	210358	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	C12orf79	-	chromosome 12 open reading frame 79	protein-coding
1359	chr6	136825265	136826433	+	0	NA	intron (NM_001198617, intron 1 of 15)	AluSz6|SINE|Alu	21502	NM_001198611	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
1479	chr8	110604548	110606724	+	0	NA	intron (NM_001099756, intron 2 of 5)	intron (NM_001099756, intron 2 of 5)	49783	NM_001099756	55638	Hs.390738	XM_005250999	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
2578	chr20	33290619	33296040	+	0	NA	intron (NM_021202, intron 2 of 4)	intron (NM_021202, intron 2 of 4)	1181	NM_021202	58476	Hs.516994	XM_005260476	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
971	chr3	120215756	120217296	+	0	NA	Intergenic	Intergenic	-46608	NM_007085	11167	Hs.269512	XM_005247083		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
4781	chr6	52588980	52590855	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	20040	NR_033760	730152	Hs.742634	NR_033760		GSTA7P	GSTAP2	glutathione S-transferase alpha 7, pseudogene	pseudo
4716	chr6	143162966	143164628	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	102541	NM_006734	3097	Hs.510172	XM_005266956	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
479	chr14	80062273	80063934	+	0	NA	intron (NM_001272020, intron 2 of 5)	LTR19A|LTR|ERV1	317421	NR_073546	9369	Hs.368307	XM_005268218		NRXN3	C14orf60	neurexin 3	protein-coding
847	chr20	21961755	21963618	+	0	NA	Intergenic	Intergenic	-72042	NR_038394	100270679	Hs.385748	NR_038394		RP11-125P18.1	-	uncharacterized LOC100270679	ncRNA
1166	chr5	67065710	67067404	+	0	NA	Intergenic	Intergenic	-419147	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
3091	chr6	7129244	7132734	+	0	NA	intron (NM_001003700, intron 1 of 11)	AluSx1|SINE|Alu	22903	NM_001003699	6239	Hs.298248	XM_005249272	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
2166	chr15	44448261	44452755	+	0	NA	intron (NM_001286490, intron 1 of 15)	intron (NM_001286490, intron 1 of 15)	36136	NM_001286490	84978	Hs.578544	XM_005254729	ENSG00000171877	FRMD5	-	FERM domain containing 5	protein-coding
1378	chr6	166012060	166013545	+	0	NA	intron (NR_045597, intron 1 of 22)	intron (NR_045597, intron 1 of 22)	62786	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
1054	chr4	41487585	41489147	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	125564	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2821	chr3	190302997	190305097	+	0	NA	intron (NM_134470, intron 3 of 8)	L2c|LINE|L2	72207	NM_001167931	3556	Hs.478673	XM_005247433	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
2101	chr13	36918473	36921710	+	0	NA	promoter-TSS (NR_045181)	promoter-TSS (NR_045181)	-477	NR_045181	100507135	Hs.631781	XR_245368	ENSG00000120664	SPG20OS	C13orf43	SPG20 opposite strand	ncRNA
619	chr18	47117285	47118967	+	0	NA	3' UTR (NM_006033, exon 10 of 10)	3' UTR (NM_006033, exon 10 of 10)	29699	NM_006033	9388	Hs.465102	XM_005258390	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase, endothelial	protein-coding
4996	chrX	100138133	100139807	+	0	NA	Intergenic	Intergenic	-9636	NM_013955	27035	Hs.592227	NM_001271815	ENSG00000007952	NOX1	GP91-2|MOX1|NOH-1|NOH1	NADPH oxidase 1	protein-coding
3797	chr12	50935196	50937146	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	37403	NM_173602	57609	Hs.505516	XM_005269044	ENSG00000066084	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
3616	chr1	241753948	241755598	+	0	NA	intron (NM_003679, intron 14 of 14)	intron (NM_003679, intron 14 of 14)	44459	NM_001821	1122	Hs.654545	NM_001821	ENSG00000203668	CHML	REP2	choroideremia-like (Rab escort protein 2)	protein-coding
621	chr18	48158019	48159984	+	0	NA	intron (NM_002747, intron 1 of 5)	AluSx|SINE|Alu	72517	NM_002747	5596	Hs.433728	XM_005258298	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
2310	chr17	68070250	68072796	+	0	NA	5' UTR (NM_170741, exon 1 of 4)	5' UTR (NM_170741, exon 1 of 4)	157	NM_018658	3773	Hs.463985	XM_005257333	ENSG00000153822	KCNJ16	BIR9|KIR5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
2495	chr2	97329609	97332547	+	0	NA	intron (NM_001113382, intron 13 of 51)	intron (NM_001113382, intron 13 of 51)	22504	NM_001113382	90342	Hs.534025	NM_001113382		FER1L5	-	fer-1-like 5 (C. elegans)	protein-coding
4908	chr8	40342850	40345485	+	0	NA	Intergenic	Intergenic	333180	NM_020130	56892	Hs.745031	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
3395	chr9	133325811	133328416	+	0	NA	intron (NM_000050, intron 2 of 15)	MIRb|SINE|MIR	7019	NM_000050	445	Hs.160786	XM_005272199	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
3052	chr6	29719629	29721843	+	0	NA	Intergenic	CpG	-1811	NR_001590	340198	Hs.450189	NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
2322	chr18	46146177	46159402	+	0	NA	intron (NM_014772, intron 2 of 11)	AluSx3|SINE|Alu	-44182	NR_039897	100616366		NR_039897		MIR4743	-	microRNA 4743	ncRNA
2438	chr2	19984224	19987976	+	0	NA	Intergenic	L2c|LINE|L2	-82515	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	AC013400.2	long intergenic non-protein coding RNA 954	ncRNA
3334	chr9	117669341	117671632	+	0	NA	intron (NM_001244, intron 2 of 3)	L2c|LINE|L2	22389	NM_001244	944	Hs.654445	NM_001244		TNFSF8	CD153|CD30L|CD30LG	tumor necrosis factor (ligand) superfamily, member 8	protein-coding
3246	chr7	51190692	51192471	+	0	NA	intron (NM_001287436, intron 6 of 13)	intron (NM_001287436, intron 6 of 13)	192934	NM_015198	23242	Hs.99141	XM_005271749	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
4179	chr2	56184884	56185522	+	0	NA	Intergenic	AluSg|SINE|Alu	25008	NR_029630	406999		NR_029630	ENSG00000207548	MIR217	MIRN217|mir-217	microRNA 217	ncRNA
4778	chr6	47665580	47667169	+	0	NA	promoter-TSS (NM_153838)	promoter-TSS (NM_153838)	85	NM_153838	221393	Hs.150131	XM_005248891	ENSG00000153294	GPR115	PGR18	G protein-coupled receptor 115	protein-coding
377	chr12	82451114	82452467	+	0	NA	Intergenic	Intergenic	104292	NR_110089	101928449	Hs.737488	XR_246014	ENSG00000257747	RP11-362A1.1	-	uncharacterized LOC101928449	ncRNA
2050	chr12	50935005	50937516	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	37492	NM_173602	57609	Hs.505516	XM_005269044	ENSG00000066084	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
602	chr18	6745991	6747432	+	0	NA	Intergenic	Intergenic	-87721	NM_001010000	79822	Hs.183114	XM_005258144	ENSG00000088756	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
3815	chr12	88172805	88174607	+	0	NA	Intergenic	L1M1|LINE|L1	4782	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
1311	chr6	75582640	75584128	+	0	NA	Intergenic	Intergenic	332239	NM_080645	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	collagen, type XII, alpha 1	protein-coding
1787	chr1	219443922	219446676	+	0	NA	Intergenic	Intergenic	98107	NM_138794	127018	Hs.657617	XM_005273046	ENSG00000143353	LYPLAL1	-	lysophospholipase-like 1	protein-coding
612	chr18	29069694	29071012	+	0	NA	Intergenic	Intergenic	-7674	NM_001943	1829	Hs.412597	NM_001943	ENSG00000046604	DSG2	ARVC10|ARVD10|CDHF5|CMD1BB|HDGC	desmoglein 2	protein-coding
936	chr3	31417870	31419752	+	0	NA	Intergenic	Intergenic	-155680	NM_178862	201595	Hs.475812	XM_005264941		STT3B	SIMP|STT3-B	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)	protein-coding
1391	chr7	18058411	18060523	+	0	NA	Intergenic	MLT1C-int|LTR|ERVL-MaLR	8019	NM_175886	221823	Hs.169284	NM_175886	ENSG00000229937	PRPS1L1	PRPS1|PRPS3|PRPSL|PRS-III	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding
3579	chr1	204696958	204697951	+	0	NA	Intergenic	Intergenic	-42857	NM_201630	10446	Hs.26312	XM_005244827	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
4510	chr4	150993481	150994982	+	0	NA	Intergenic	Intergenic	-5195	NM_001040260	166614	Hs.591683	XM_005262785	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
2794	chr3	113250528	113252461	+	0	NA	5' UTR (NM_017699, exon 1 of 25)	5' UTR (NM_017699, exon 1 of 25)	276	NM_017699	54847	Hs.591291	XM_005247557	ENSG00000072858	SIDT1	B830021E24Rik|SID-1|SID1	SID1 transmembrane family, member 1	protein-coding
701	chr2	33089925	33091540	+	0	NA	intron (NR_027098, intron 2 of 5)	intron (NR_027098, intron 2 of 5)	-17034	NR_027099	285045	Hs.434660	XR_244929	ENSG00000230876	LINC00486	AL121656.4	long intergenic non-protein coding RNA 486	ncRNA
3710	chr11	73988926	73991075	+	0	NA	intron (NM_001288748, intron 8 of 12)	intron (NM_001288748, intron 8 of 12)	32721	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
214	chr10	110357260	110359981	+	0	NA	Intergenic	Intergenic	-571795	NR_046928	100873762		NR_046928		RNU6-53P	RNU6-53	RNA, U6 small nuclear 53, pseudogene	snRNA
3630	chr10	69581523	69583693	+	0	NA	intron (NM_021800, intron 2 of 4)	AluSx3|SINE|Alu	15329	NM_201262	56521	Hs.260720	NM_021800	ENSG00000108176	DNAJC12	JDP1	DnaJ (Hsp40) homolog, subfamily C, member 12	protein-coding
2708	chr3	9461395	9473712	+	0	NA	intron (NM_001080517, intron 2 of 22)	intron (NM_001080517, intron 2 of 22)	28150	NM_001080517	55209	Hs.288164	XM_005265296	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding
2789	chr3	111792714	111794989	+	0	NA	intron (NR_026734, intron 13 of 16)	intron (NR_026734, intron 13 of 16)	-11331	NM_001171747	79669	Hs.434247	XM_005247764	ENSG00000114529	C3orf52	TTMP	chromosome 3 open reading frame 52	protein-coding
1650	chr1	201094298	201097301	+	0	NA	Intergenic	MIR|SINE|MIR	-11299	NM_001270601	647219	Hs.721460	NM_001270601		ASCL5	bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding
2074	chr12	102959740	102963122	+	0	NA	Intergenic	MIRb|SINE|MIR	-87053	NM_001111283	3479	Hs.160562	XM_005268835	ENSG00000017427	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
2539	chr2	183222893	183226105	+	0	NA	intron (NM_001003683, intron 2 of 14)	intron (NM_001003683, intron 2 of 14)	67276	NM_001258313	5136	Hs.742174	XM_005246635	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
2547	chr2	204512541	204516365	+	0	NA	Intergenic	Intergenic	-56745	NM_006139	940	Hs.443123	XM_005246969	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
731	chr2	72981534	72985807	+	0	NA	intron (NM_015189, intron 1 of 21)	intron (NM_015189, intron 1 of 21)	69507	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
3639	chr10	5673587	5675272	+	0	NA	Intergenic	Intergenic	34129	NR_037164	79754	Hs.445899	NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
2779	chr3	105716021	105717997	+	0	NA	Intergenic	L1MA2|LINE|L1	-129122	NM_170662	868	Hs.430589	XM_005247852	ENSG00000114423	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
4281	chr20	33291142	33294030	+	0	NA	intron (NM_021202, intron 1 of 4)	intron (NM_021202, intron 1 of 4)	438	NM_021202	58476	Hs.516994	XM_005260476	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
2139	chr14	51430640	51432698	+	0	NA	Intergenic	Intergenic	-20421	NM_002863	5836	Hs.282417	NM_001163940	ENSG00000100504	PYGL	GSD6	phosphorylase, glycogen, liver	protein-coding
768	chr2	160491212	160492706	+	0	NA	Intergenic	Intergenic	-18900	NM_013450	29994	Hs.470369	XM_005246488	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain, 2B	protein-coding
1928	chr11	73986420	73992244	+	0	NA	intron (NM_001288748, intron 8 of 12)	intron (NM_001288748, intron 8 of 12)	33389	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
1092	chr4	122704852	122708347	+	0	NA	Intergenic	Intergenic	-15873	NM_005033	5393	Hs.91728	XM_005263068	ENSG00000123737	EXOSC9	PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
3877	chr14	80052028	80053714	+	0	NA	intron (NM_001272020, intron 2 of 5)	intron (NM_001272020, intron 2 of 5)	307189	NR_073546	9369	Hs.368307	XM_005268218		NRXN3	C14orf60	neurexin 3	protein-coding
2255	chr16	67492731	67497808	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	19820	NM_004691	9114	Hs.106876	XM_005256231	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1	protein-coding
1756	chr1	186816268	186820781	+	0	NA	intron (NM_024420, intron 1 of 17)	L2b|LINE|L2	20492	NM_024420	5321	Hs.497200	XM_005245267	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
1636	chr1	95533798	95535984	+	0	NA	intron (NM_144988, intron 1 of 3)	intron (NM_144988, intron 1 of 3)	3616	NM_144988	199857	Hs.408927	XM_005270582		ALG14	-	ALG14, UDP-N-acetylglucosaminyltransferase subunit	protein-coding
2491	chr2	79846267	79848657	+	0	NA	intron (NM_001282598, intron 1 of 17)	L2b|LINE|L2	29023	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	ncRNA
4885	chr7	129609211	129610940	+	0	NA	Intergenic	Intergenic	-17275	NM_003344	7328	Hs.643548	NM_001202498	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
4976	chr9	112238826	112240761	+	0	NA	intron (NM_002829, intron 1 of 25)	Kanga11a|DNA|TcMar-Tc2	20800	NM_002829	5774	Hs.436429	NM_001145368	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
338	chr12	15909978	15911710	+	0	NA	intron (NM_004447, intron 1 of 20)	MLT1G3|LTR|ERVL-MaLR	31666	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
3105	chr6	13404009	13411783	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	473	NM_001242630	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
576	chr17	12425407	12427148	+	0	NA	Intergenic	Intergenic	-27008	NR_034145	284034	Hs.376614	XR_243553	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	ncRNA
761	chr2	126453474	126455254	+	0	NA	Intergenic	Intergenic	-959147	NM_001256584	2995	Hs.59138	XM_005263653	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
4748	chr6	21752555	21755562	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	87383	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
738	chr2	76509988	76510897	+	0	NA	Intergenic	Intergenic	-572331	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
1775	chr1	208411909	208414121	+	0	NA	intron (NM_025179, intron 1 of 31)	intron (NM_025179, intron 1 of 31)	4650	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
1415	chr7	91388023	91389557	+	0	NA	Intergenic	L1PA7|LINE|L1	121226	NM_006980	7978	Hs.532216	XM_005250593	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
484	chr14	95805369	95808214	+	0	NA	Intergenic	MIRb|SINE|MIR	10870	NR_110127	101929080	Hs.525567	XR_245812	ENSG00000258630	RP11-725G5.2	-	uncharacterized LOC101929080	ncRNA
3408	chrX	69744465	69747573	+	0	NA	Intergenic	L1MC4|LINE|L1	-70175	NR_109801	100873930	Hs.571699	XR_244507		DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
2334	chr18	13538909	13543552	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	-69883	NR_039752	100616130		NR_039752		MIR4526	-	microRNA 4526	ncRNA
1078	chr4	69446934	69448600	+	0	NA	Intergenic	MER48|LTR|ERV1	-13522	NM_001077	7367	Hs.575083	NM_001077	ENSG00000197888	UGT2B17	BMND12|UDPGT2B17	UDP glucuronosyltransferase 2 family, polypeptide B17	protein-coding
1243	chr6	76166640	76171236	+	0	NA	intron (NM_015687, intron 1 of 5)	intron (NM_015687, intron 1 of 5)	34558	NM_015687	27145	Hs.696158	XM_005248713	ENSG00000118407	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
2530	chr2	158720515	158724994	+	0	NA	intron (NM_001111067, intron 1 of 10)	intron (NM_001111067, intron 1 of 10)	8869	NM_001105	90	Hs.470316	XM_005246939	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor, type I	protein-coding
4833	chr7	372118	373833	+	0	NA	Intergenic	CpG	42839	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
623	chr18	52743709	52745241	+	0	NA	Intergenic	Intergenic	-117736	NM_025214	80323	Hs.120790	XM_005266771	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
4091	chr18	51780184	51781690	+	0	NA	Intergenic	Intergenic	-14912	NM_007195	11201	Hs.438533	XM_005258188	ENSG00000101751	POLI	RAD30B|RAD3OB	polymerase (DNA directed) iota	protein-coding
3885	chr14	36345939	36349016	+	0	NA	Intergenic	Intergenic	51880	NM_032352	84312	Hs.525299	XM_005268128	ENSG00000100916	BRMS1L	BRMS1	breast cancer metastasis-suppressor 1-like	protein-coding
1512	chr9	21252637	21253749	+	0	NA	Intergenic	Intergenic	-13215	NM_002172	3448	Hs.93907	NM_002172	ENSG00000228083	IFNA14	IFN-alphaH|LEIF2H	interferon, alpha 14	protein-coding
2956	chr5	909783	914947	+	0	NA	intron (NM_004237, intron 10 of 12)	intron (NM_004237, intron 10 of 12)	19396	NM_001166260	9319	Hs.436187	XM_005248388	ENSG00000071539	TRIP13	16E1BP	thyroid hormone receptor interactor 13	protein-coding
4502	chr3	159858847	159860257	+	0	NA	intron (NR_108088, intron 3 of 9)	MamRep605|Unknown|Unknown	65327	NR_108088	101928376	Hs.565865	XR_241609	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
2946	chr5	124223205	124225603	+	0	NA	Intergenic	Intergenic	-143599	NM_020747	57507	Hs.266616	XM_005272037	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
2564	chr2	228739870	228742967	+	0	NA	intron (NM_178821, intron 1 of 12)	intron (NM_178821, intron 1 of 12)	5091	NM_178821	164781	Hs.424594	XM_005246361	ENSG00000123977	DAW1	ODA16|WDR69	dynein assembly factor with WDR repeat domains 1	protein-coding
2382	chr19	43031284	43033744	+	0	NA	exon (NM_001184816, exon 1 of 7)	exon (NM_001184816, exon 1 of 7)	147	NM_001712	634	Hs.512682	NM_001024912	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	protein-coding
328	chr12	94091596	94094113	+	0	NA	intron (NM_003805, intron 2 of 2)	intron (NM_003805, intron 2 of 2)	21703	NM_003805	8738	Hs.719191	XM_005269211	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
4462	chr3	109071690	109072511	+	0	NA	Intergenic	Intergenic	-15681	NM_018189	55211	Hs.317659	XM_005247576	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
628	chr18	77769487	77771395	+	0	NA	Intergenic	LTR25|LTR|ERV1	-21909	NM_006701	10907	Hs.465498	XM_005266645	ENSG00000141759	TXNL4A	DIB1|DIM1|HsT161|SNRNP15|TXNL4|U5-15kD	thioredoxin-like 4A	protein-coding
1223	chr5	157297116	157299404	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	-12077	NM_001195555	9685	Hs.644000	XM_005266013	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
4014	chr17	2307086	2311809	+	0	NA	TTS (NR_028335)	TTS (NR_028335)	-5189	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
4803	chr6	125474641	125476308	+	0	NA	promoter-TSS (NM_001003395)	promoter-TSS (NM_001003395)	54	NM_001003395	7164	Hs.591347	XM_005267120	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
3538	chr1	163844411	163845716	+	0	NA	Intergenic	Intergenic	-452082	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
4271	chr2	234669202	234670946	+	0	NA	intron (NM_000463, intron 1 of 4)	intron (NM_000463, intron 1 of 4)	1155	NM_000463	54658	Hs.554822	NM_000463	ENSG00000242366	UGT1A1	BILIQTL1|GNT1|HUG-BR1|UDPGT|UDPGT 1-1|UGT1|UGT1A	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding
5003	chrX	39999520	40001173	+	0	NA	intron (NM_001123383, intron 1 of 14)	intron (NM_001123383, intron 1 of 14)	36236	NM_001123383	54880	Hs.659681	XM_005272616	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
733	chr2	76014722	76018284	+	0	NA	Intergenic	Intergenic	-78392	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
3745	chr11	118065406	118066815	+	0	NA	intron (NM_001286571, intron 8 of 8)	intron (NM_001286571, intron 8 of 8)	17964	NM_153206	120425	Hs.16291	XM_005271406	ENSG00000160593	AMICA1	AMICA|CREA7-1|CREA7-4|Gm638|JAML	adhesion molecule, interacts with CXADR antigen 1	protein-coding
630	chr19	13200116	13205520	+	0	NA	intron (NM_001271043, intron 10 of 10)	intron (NM_001271043, intron 10 of 10)	11156	NM_005583	4066	Hs.728534	XM_005259912	ENSG00000104903	LYL1	bHLHa18	lymphoblastic leukemia associated hematopoiesis regulator 1	protein-coding
997	chr3	192548430	192552001	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	85735	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
5001	chrX	106215633	106218162	+	0	NA	intron (NM_001085354, intron 9 of 16)	MLT1D|LTR|ERVL-MaLR	26577	NM_024657	79710	Hs.496544	XM_005262190	ENSG00000133131	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
4947	chr9	38380423	38382359	+	0	NA	Intergenic	Intergenic	-11270	NM_000692	219	Hs.743532	XM_005251406	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family, member B1	protein-coding
3394	chr9	130909975	130914179	+	0	NA	intron (NM_005564, intron 1 of 6)	intron (NM_005564, intron 1 of 6)	345	NM_005564	3934	Hs.204238	NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL	lipocalin 2	protein-coding
608	chr18	25670436	25672417	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	86019	NM_001792	1000	Hs.606106	XM_005258181	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
3263	chr7	99391617	99394417	+	0	NA	Intergenic	Intergenic	-11206	NM_001202855	1576	Hs.728751	NM_001202855		CYP3A4	CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1	cytochrome P450, family 3, subfamily A, polypeptide 4	protein-coding
1234	chr5	180252064	180254537	+	0	NA	Intergenic	L1MD2|LINE|L1	-4657	NR_045678	729678	Hs.655606	NR_027183	ENSG00000245060	LINC00847	-	long intergenic non-protein coding RNA 847	ncRNA
1649	chr1	197098717	197101186	+	0	NA	intron (NM_018136, intron 7 of 27)	intron (NM_018136, intron 7 of 27)	15873	NM_018136	259266	Hs.121028	NM_001206846	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	asp (abnormal spindle) homolog, microcephaly associated (Drosophila)	protein-coding
2226	chr15	90326959	90330193	+	0	NA	3' UTR (NM_001150, exon 21 of 21)	3' UTR (NM_001150, exon 21 of 21)	8987	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
2878	chr4	77818108	77819919	+	0	NA	promoter-TSS (NM_001029870)	promoter-TSS (NM_001029870)	-11	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
4108	chr19	41426507	41428298	+	0	NA	Intergenic	Intergenic	-2768	NR_001278	1556	Hs.529117	NR_001278	ENSG00000256612	CYP2B7P	CYP2B|CYP2B7|CYP2B7P1	cytochrome P450, family 2, subfamily B, polypeptide 7, pseudogene	pseudo
4535	chr4	24473213	24475446	+	0	NA	Intergenic	CpG	47584	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
1474	chr8	107600359	107602757	+	0	NA	intron (NM_001198533, intron 3 of 16)	LTR36|LTR|ERV1	-68478	NM_181354	55074	Hs.701892	XM_005250993	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
125	chr1	204540877	204544922	+	0	NA	Intergenic	Intergenic	57392	NM_001278517	4194	Hs.497492	XM_005245168	ENSG00000198625	MDM4	HDMX|MDMX|MRP1	Mdm4 p53 binding protein homolog (mouse)	protein-coding
44	chr1	60284839	60286377	+	0	NA	intron (NM_015888, intron 1 of 21)	intron (NM_015888, intron 1 of 21)	5075	NM_015888	51361	Hs.378836	XM_005270922	ENSG00000134709	HOOK1	HK1	hook microtubule-tethering protein 1	protein-coding
2152	chr14	85902434	85909549	+	0	NA	Intergenic	Intergenic	45732	NR_102738	100996280	Hs.742397	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
1687	chr1	39622653	39628155	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	75565	NM_012090	23499	Hs.692278	XM_005270694	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
1188	chr5	112598982	112600931	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	30656	NM_002387	4163	Hs.593171	XM_005271991	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
5016	chrX	107682622	107684116	+	0	NA	promoter-TSS (NM_001847)	promoter-TSS (NM_001847)	295	NM_033380	1287	Hs.369089	XM_005262070	ENSG00000188153	COL4A5	ASLN|ATS|CA54	collagen, type IV, alpha 5	protein-coding
3142	chr6	74959172	74961915	+	0	NA	Intergenic	Intergenic	555029	NM_133493	135228	Hs.399891	XM_005248659	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
2008	chr12	88184071	88201731	+	0	NA	Intergenic	L1PA15|LINE|L1	-14413	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
2862	chr4	19740251	19742053	+	0	NA	Intergenic	Intergenic	-514035	NM_001289135	9353	Hs.29802	XM_005248211	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
714	chr2	63453029	63454786	+	0	NA	intron (NM_015910, intron 14 of 17)	intron (NM_015910, intron 14 of 17)	-107230	NR_036635	100169989	Hs.606147	NR_036635	ENSG00000242412	DBIL5P2	ELP1P	diazepam binding inhibitor-like 5 pseudogene 2	pseudo
1564	chrX	41765152	41766911	+	0	NA	intron (NM_001126054, intron 1 of 25)	intron (NM_001126054, intron 1 of 25)	16256	NM_001126055	8573	Hs.495984	XM_005272685	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
4364	chr21	33261169	33261970	+	0	NA	intron (NM_014586, intron 1 of 10)	intron (NM_014586, intron 1 of 10)	15941	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
2663	chr21	33752570	33762854	+	0	NA	intron (NM_014825, intron 2 of 38)	intron (NM_014825, intron 2 of 38)	7600	NM_014825	9875	Hs.473611	NM_014825	ENSG00000142207	URB1	C21orf108|NPA1	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding
5008	chrX	56157040	56157651	+	0	NA	Intergenic	L1PA3|LINE|L1	-101477	NM_007250	11279	Hs.646614	XM_005261977	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
4690	chr5	171845171	171848335	+	0	NA	intron (NM_001017995, intron 2 of 12)	intron (NM_001017995, intron 2 of 12)	34774	NM_001017995	285590	Hs.285666	XM_005265888	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
4631	chr5	79541736	79544200	+	0	NA	intron (NM_178276, intron 1 of 12)	intron (NM_178276, intron 1 of 12)	8930	NM_001174072	256987	Hs.288232	XM_005248478	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
397	chr12	107876679	107882184	+	0	NA	intron (NM_001018072, intron 1 of 16)	intron (NM_001018072, intron 1 of 16)	-95203	NM_001017523	121551	Hs.271272	XM_005268645	ENSG00000151136	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
1096	chr4	143299899	143301334	+	0	NA	intron (NM_001101669, intron 7 of 25)	intron (NM_001101669, intron 7 of 25)	466988	NM_003866	8821	Hs.531403	XM_005263322	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
3285	chr7	137614658	137618956	+	0	NA	intron (NM_001253775, intron 1 of 3)	L1ME3C|LINE|L1	-21287	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
2934	chr5	71217973	71222691	+	0	NA	Intergenic	Intergenic	-182786	NM_005909	4131	Hs.335079	XM_005248507	ENSG00000131711	MAP1B	FUTSCH|MAP5	microtubule-associated protein 1B	protein-coding
1657	chr1	201615700	201621956	+	0	NA	intron (NM_020443, intron 1 of 29)	CpG	1378	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
3009	chr5	127291935	127296581	+	0	NA	Intergenic	Intergenic	124508	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
4432	chr3	50648394	50650330	+	0	NA	promoter-TSS (NM_013324)	promoter-TSS (NM_013324)	69	NM_001243926	7867	Hs.735013	XR_245155	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MK-3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding
2185	chr15	38192262	38194364	+	0	NA	Intergenic	Intergenic	-34144	NM_152453	145942	Hs.179646	XM_005254168	ENSG00000166069	TMCO5A	TMCO5	transmembrane and coiled-coil domains 5A	protein-coding
2717	chr3	112347901	112369128	+	0	NA	exon (NM_199511, exon 2 of 8)	exon (NM_199511, exon 2 of 8)	1476	NM_199512	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
1191	chr5	119949206	119952471	+	0	NA	intron (NM_016644, intron 2 of 2)	MIR|SINE|MIR	150819	NM_016644	51334	Hs.157461	XM_005272010	ENSG00000184838	PRR16	DSC54	proline rich 16	protein-coding
823	chr20	5344490	5346003	+	0	NA	Intergenic	Intergenic	-50231	NM_144773	128674	Hs.375029	XM_005260663	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
4659	chr5	124081139	124085463	+	0	NA	Intergenic	Intergenic	-2496	NM_020747	57507	Hs.266616	XM_005272037	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
4666	chr5	132946261	132948812	+	0	NA	intron (NM_015082, intron 1 of 15)	CpG	687	NM_015082	23105	Hs.483390	NM_015082	ENSG00000053108	FSTL4	-	follistatin-like 4	protein-coding
771	chr2	178189398	178191443	+	0	NA	intron (NR_026966, intron 5 of 8)	intron (NR_026966, intron 5 of 8)	-11810	NR_106767	102465255		NR_106767		MIR6512	hsa-mir-6512	microRNA mir-6512	ncRNA
401	chr12	120484248	120486304	+	0	NA	intron (NM_207311, intron 2 of 8)	MIR3|SINE|MIR	57628	NM_207311	92558	Hs.369763	XM_005253991	ENSG00000135127	CCDC64	BICDR-1|H_267D11.1	coiled-coil domain containing 64	protein-coding
186	chr10	67178289	67180300	+	0	NA	Intergenic	Intergenic	594009	NR_001446	305	Hs.591361	NR_001446		ANXA2P3	ANX2L3|ANX2P3|LIP2|LPC2C	annexin A2 pseudogene 3	pseudo
1797	chr1	227615883	227618309	+	0	NA	Intergenic	Intergenic	-111270	NM_003607	8476	Hs.35433	XM_005273317	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
1119	chr4	184796226	184799460	+	0	NA	Intergenic	Intergenic	-28666	NM_020225	56977	Hs.696657	XM_005263142	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
1914	chr10	122850969	122853424	+	0	NA	Intergenic	Intergenic	-241505	NR_033850	283089	Hs.568750	XR_246085	ENSG00000227165	WDR11-AS1	RP11-323P17.1	WDR11 antisense RNA 1	ncRNA
3039	chr5	172628367	172630110	+	0	NA	Intergenic	MER113B|DNA|hAT-Charlie	33077	NM_001166175	1482	Hs.54473	XM_005265820	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
1705	chr1	68361782	68364497	+	0	NA	intron (NR_040077, intron 1 of 9)	intron (NR_040077, intron 1 of 9)	-63984	NM_018841	55970	Hs.431101	XM_005271043	ENSG00000172380	GNG12	-	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
3000	chr5	118608895	118612126	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	6123	NM_001286815	25816	Hs.656274	XM_005271952		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
915	chr3	7381771	7383675	+	0	NA	intron (NM_000844, intron 4 of 9)	intron (NM_000844, intron 4 of 9)	479921	NM_000844	2917	Hs.660131	XM_005265095	ENSG00000196277	GRM7	GLUR7|GPRC1G|MGLU7|MGLUR7	glutamate receptor, metabotropic 7	protein-coding
2978	chr5	66309838	66313440	+	0	NA	intron (NM_015183, intron 3 of 27)	intron (NM_015183, intron 3 of 27)	180978	NM_005582	4064	Hs.87205	XM_005248504	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
1586	chrX	76229449	76231350	+	0	NA	Intergenic	Intergenic	-90614	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
4037	chr17	37906171	37907667	+	0	NA	Intergenic	Intergenic	10699	NM_001242443	2886	Hs.86859	NM_001030002	ENSG00000141738	GRB7	-	growth factor receptor-bound protein 7	protein-coding
1986	chr12	71037892	71041302	+	0	NA	intron (NR_073474, intron 9 of 10)	intron (NR_073474, intron 9 of 10)	-8377	NM_001109754	5787	Hs.434375	XR_245948	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
1456	chr8	23737819	23739880	+	0	NA	Intergenic	Intergenic	-26529	NM_003155	6781	Hs.25590	XM_005273621	ENSG00000159167	STC1	STC	stanniocalcin 1	protein-coding
2606	chr20	3336343	3338202	+	0	NA	intron (NM_001009984, intron 7 of 36)	intron (NM_001009984, intron 7 of 36)	51037	NM_001009984	25943	Hs.516853	XM_005260684	ENSG00000088854	C20orf194	-	chromosome 20 open reading frame 194	protein-coding
2060	chr12	67948489	67950120	+	0	NA	intron (NR_103861, intron 2 of 2)	L1PA7|LINE|L1	35442	NR_103861	100507175	Hs.730491	NR_103861	ENSG00000203585	RP11-542B15.1	-	uncharacterized LOC100507175	ncRNA
3561	chr1	192873307	192874760	+	0	NA	Intergenic	Intergenic	95864	NM_002923	5997	Hs.78944	NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G-protein signaling 2, 24kDa	protein-coding
1551	chrX	69811341	69812858	+	0	NA	intron (NM_001003811, intron 25 of 30)	L1MB8|LINE|L1	-136255	NR_109801	100873930	Hs.571699	XR_244507		DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
3981	chr16	9562783	9564183	+	0	NA	Intergenic	Intergenic	94765	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA mir-7641-2	ncRNA
4607	chr5	6904473	6906877	+	0	NA	Intergenic	Intergenic	-77641	NR_036242	100422999		NR_036242		MIR4278	-	microRNA 4278	ncRNA
2904	chr4	141646184	141651502	+	0	NA	intron (NM_015130, intron 1 of 20)	intron (NM_015130, intron 1 of 20)	28628	NM_015130	23158	Hs.595450	NM_015130	ENSG00000109436	TBC1D9	MDR1	TBC1 domain family, member 9 (with GRAM domain)	protein-coding
3643	chr10	12446584	12448893	+	0	NA	intron (NM_020397, intron 1 of 9)	MamRep434|DNA|TcMar-Tigger	56155	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
2346	chr18	46088738	46091334	+	0	NA	intron (NM_001142397, intron 2 of 12)	AluSx|SINE|Alu	24609	NM_001142397	9811	Hs.145230	XM_005258392	ENSG00000134030	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
2195	chr15	52088099	52090129	+	0	NA	intron (NM_014548, intron 7 of 9)	MER44D|DNA|TcMar-Tigger	-32711	NM_014547	29766	Hs.4998	NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3 (ubiquitous)	protein-coding
561	chr16	73115710	73117477	+	0	NA	Intergenic	Intergenic	-9655	NR_027756	283902	Hs.382776	NM_001101347	ENSG00000260880	HCCAT5	FJ222407|HTA|RP11-346C20.2	hepatocellular carcinoma associated transcript 5 (non-protein coding)	ncRNA
2112	chr13	99802040	99806471	+	0	NA	Intergenic	Intergenic	-48424	NM_001144072	337867	Hs.508545	NM_001144072	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
2555	chr2	218189749	218193209	+	0	NA	intron (NR_026597, intron 9 of 12)	intron (NR_026597, intron 9 of 12)	429837	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
2221	chr15	88020562	88022151	+	0	NA	Intergenic	Intergenic	-98804	NR_026869	145978	Hs.350808	NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
3718	chr11	17565335	17566226	+	0	NA	intron (NM_153676, intron 1 of 26)	CpG	183	NM_153676	10083	Hs.502072	XM_005252725	ENSG00000006611	USH1C	AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst	Usher syndrome 1C (autosomal recessive, severe)	protein-coding
2982	chr5	71576958	71579744	+	0	NA	intron (NM_001286748, intron 4 of 11)	intron (NM_001286748, intron 4 of 11)	37733	NM_001286751	23107	Hs.482491	XM_005248471	ENSG00000113048	MRPS27	MRP-S27|S27mt	mitochondrial ribosomal protein S27	protein-coding
1307	chr6	52647135	52648683	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-19548	NM_000846	2939	Hs.94107	NM_000846	ENSG00000244067	GSTA2	GST2|GSTA2-2|GTA2|GTH2	glutathione S-transferase alpha 2	protein-coding
1812	chr1	246794326	246797197	+	0	NA	intron (NM_152609, intron 4 of 10)	intron (NM_152609, intron 4 of 10)	66122	NM_152609	163882	Hs.368353	XM_005273081	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
1769	chr1	202052958	202058252	+	0	NA	Intergenic	MER110A|LTR|ERV1	-36424	NM_004767	9283	Hs.132049	NM_004767		GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
2475	chr2	67786727	67789700	+	0	NA	Intergenic	Intergenic	163771	NM_019002	54465	Hs.353022	XM_005264374	ENSG00000143971	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
1875	chr10	63852016	63857478	+	0	NA	3' UTR (NM_001244638, exon 7 of 7)	3' UTR (NM_001244638, exon 7 of 7)	45777	NM_001244638	84159	Hs.535297	XM_005270215	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
3834	chr12	106736108	106737353	+	0	NA	intron (NM_152772, intron 9 of 9)	intron (NM_152772, intron 9 of 9)	-14706	NM_018082	55703	Hs.610795	NM_001160708	ENSG00000013503	POLR3B	C128|HLD8|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding
1673	chr1	5656442	5660150	+	0	NA	Intergenic	Intergenic	34165	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
4084	chr18	46188203	46189275	+	0	NA	intron (NM_014772, intron 3 of 11)	intron (NM_014772, intron 3 of 11)	-8232	NR_039897	100616366		NR_039897		MIR4743	-	microRNA 4743	ncRNA
4027	chr17	9783359	9784629	+	0	NA	intron (NM_004246, intron 11 of 12)	intron (NM_004246, intron 11 of 12)	24690	NM_002903	5957	Hs.80539	NM_002903		RCVRN	RCV1	recoverin	protein-coding
297	chr11	115617666	115619814	+	0	NA	Intergenic	Intergenic	12178	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
963	chr3	111633936	111637724	+	0	NA	intron (NM_145753, intron 3 of 16)	intron (NM_145753, intron 3 of 16)	57262	NM_001134439	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
4959	chr9	86086390	86089358	+	0	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	-5217	NM_001244960	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4931	chr9	100990647	100991480	+	0	NA	TTS (NR_106913)	TTS (NR_106913)	436	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA mir-6854	ncRNA
2031	chr12	15814669	15816844	+	0	NA	intron (NM_004447, intron 8 of 20)	intron (NM_004447, intron 8 of 20)	116478	NM_030668	5800	Hs.160871	NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
980	chr3	145274132	145275405	+	0	NA	Intergenic	Intergenic	604514	NM_000935	5352	Hs.477866	XM_005247535	ENSG00000152952	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
1596	chrX	107555412	107556785	+	0	NA	intron (NM_033641, intron 2 of 44)	intron (NM_033641, intron 2 of 44)	125562	NM_001287760	1288	Hs.145586	XM_005262073	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3	collagen, type IV, alpha 6	protein-coding
2697	chr22	27869801	27873592	+	0	NA	Intergenic	Intergenic	325790	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
2097	chr13	31316289	31319330	+	0	NA	intron (NM_001204406, intron 2 of 5)	L2c|LINE|L2	8164	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
1651	chr1	201131028	201147712	+	0	NA	intron (NM_001288564, intron 1 of 5)	intron (NM_001288564, intron 1 of 5)	1340	NM_001288564	252839	Hs.181444	XM_005245063	ENSG00000116857	TMEM9	TMEM9A	transmembrane protein 9	protein-coding
1569	chrX	47220073	47222564	+	0	NA	Intergenic	Intergenic	-8681	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
2542	chr2	190417012	190421293	+	0	NA	Intergenic	AluJr|SINE|Alu	26385	NM_014585	30061	Hs.643005	XM_005246504	ENSG00000138449	SLC40A1	FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
2123	chr14	70462494	70473089	+	0	NA	intron (NM_001034852, intron 7 of 11)	intron (NM_001034852, intron 7 of 11)	79143	NM_182936	6547	Hs.337696	XM_005268017	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
530	chr16	9650083	9652418	+	0	NA	Intergenic	Intergenic	6998	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA mir-7641-2	ncRNA
3701	chr10	112661634	112662798	+	0	NA	intron (NM_001243783, intron 1 of 2)	intron (NM_001243783, intron 1 of 2)	4368	NR_039828	100616113		NR_039828	ENSG00000265827	MIR4680	-	microRNA 4680	ncRNA
3805	chr12	58926284	58927024	+	0	NA	Intergenic	L2c|LINE|L2	386673	NM_001136051	121227	Hs.253736	NM_001136051	ENSG00000139263	LRIG3	LIG3	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
3067	chr6	88439168	88443452	+	0	NA	Intergenic	AluJo|SINE|Alu	-29325	NM_018064	55122	Hs.485915	NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
2675	chr21	44748005	44756032	+	0	NA	promoter-TSS (NR_103713)	promoter-TSS (NR_103713)	-99	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	AP001046.4|C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
470	chr14	70108762	70112255	+	0	NA	intron (NM_014734, intron 1 of 5)	MIRb|SINE|MIR	32198	NM_014734	9766	Hs.440025	XM_005268241	ENSG00000100647	KIAA0247	-	KIAA0247	protein-coding
1524	chr9	72184392	72185897	+	0	NA	intron (NM_001163, intron 1 of 12)	L2c|LINE|L2	102131	NM_001163	320	Hs.592974	XM_005251967	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
4142	chr2	18059248	18061232	+	0	NA	intron (NM_002252, intron 1 of 2)	CpG	316	NM_002252	3790	Hs.414489	XM_005262614	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
2360	chr18	60448412	60450426	+	0	NA	intron (NM_194449, intron 1 of 16)	intron (NM_194449, intron 1 of 16)	66747	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
1287	chr6	22041609	22045131	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	104052	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
4650	chr5	99699854	99702112	+	0	NA	Intergenic	Intergenic	22975	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
2403	chr2	30453567	30464871	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	4822	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
654	chr2	23231927	23233327	+	0	NA	Intergenic	Intergenic	-375671	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
2261	chr16	75539803	75542135	+	0	NA	Intergenic	MIRc|SINE|MIR	-12043	NM_021615	4166	Hs.655622	XM_005255955		CHST6	MCDC1	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6	protein-coding
283	chr11	100021997	100023696	+	0	NA	intron (NM_001243271, intron 13 of 20)	intron (NM_001243271, intron 13 of 20)	-535561	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
156	chr10	93108957	93111941	+	0	NA	intron (NR_024467, intron 4 of 4)	intron (NR_024467, intron 4 of 4)	-59593	NR_104291	143279	Hs.596096	XM_005269554	ENSG00000165338	HECTD2	-	HECT domain containing E3 ubiquitin protein ligase 2	protein-coding
3993	chr16	57668771	57669845	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	-3899	NM_001145774	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
4178	chr2	56088730	56090652	+	0	NA	Intergenic	MIRc|SINE|MIR	61607	NM_001039349	2202	Hs.732348	XM_005264204	ENSG00000115380	EFEMP1	DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5	EGF containing fibulin-like extracellular matrix protein 1	protein-coding
3414	chrX	34901816	34904124	+	0	NA	Intergenic	Intergenic	-57943	NM_152631	170062	Hs.197801	NM_152631	ENSG00000189132	FAM47B	-	family with sequence similarity 47, member B	protein-coding
4278	chr2	243022415	243023504	+	0	NA	Intergenic	Intergenic	-7885	NR_024437	728323	Hs.471887	XR_241435		LOC728323	-	uncharacterized LOC728323	ncRNA
1744	chr1	172416501	172421884	+	0	NA	intron (NM_139240, intron 3 of 6)	intron (NM_139240, intron 3 of 6)	-5962	NM_002642	5279	Hs.188456	NM_002642	ENSG00000135845	PIGC	GPI2	phosphatidylinositol glycan anchor biosynthesis, class C	protein-coding
864	chr20	52700997	52702328	+	0	NA	Intergenic	Intergenic	-14358	NM_003657	8537	Hs.400556	XM_005260587	ENSG00000064787	BCAS1	AIBC1|NABC1	breast carcinoma amplified sequence 1	protein-coding
2913	chr4	157851367	157853585	+	0	NA	intron (NR_036641, intron 1 of 6)	intron (NR_036641, intron 1 of 6)	40070	NM_016205	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
1170	chr5	81681923	81684532	+	0	NA	Intergenic	Intergenic	82061	NM_001017971	92270	Hs.729805	NM_001017971	ENSG00000205464	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
3382	chr9	118350474	118355058	+	0	NA	Intergenic	LTR78|LTR|ERV1	153752	NR_109805	101928775	Hs.522362	XR_242668		LOC101928775	-	uncharacterized LOC101928775	ncRNA
1896	chr10	93997018	94001743	+	0	NA	exon (NM_014912, exon 2 of 10)	exon (NM_014912, exon 2 of 10)	3656	NM_001178137	22849	Hs.701732	XM_005269630	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
2895	chr4	129273719	129280553	+	0	NA	Intergenic	L1ME4a|LINE|L1	-67152	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
1042	chr4	24218461	24222674	+	0	NA	Intergenic	Intergenic	301346	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
1686	chr1	33413257	33417395	+	0	NA	exon (NM_153341, exon 2 of 9)	exon (NM_153341, exon 2 of 9)	14960	NM_153341	127544	Hs.591504	XM_005270460	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
3874	chr14	65223398	65227196	+	0	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	27107	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA mir-7855	ncRNA
38	chr1	31985205	31990504	+	0	NA	non-coding (NR_027085, exon 3 of 3)	non-coding (NR_027085, exon 3 of 3)	3818	NR_027085	284551	Hs.658659	NR_027085	ENSG00000223907	RP11-439L8.4	-	uncharacterized LOC284551	ncRNA
196	chr10	86584338	86585624	+	0	NA	Intergenic	Intergenic	400043	NM_001284242	54462	Hs.461988	XM_005269904	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
4817	chr6	150920633	150922065	+	0	NA	intron (NM_001029884, intron 1 of 16)	CpG	350	NM_001029884	57480	Hs.189781	XM_005267064	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
4745	chr6	18387061	18388246	+	0	NA	promoter-TSS (NM_182757)	promoter-TSS (NM_182757)	72	NM_182757	255488	Hs.148741	XM_005248984	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
4143	chr2	19172214	19173849	+	0	NA	Intergenic	Intergenic	-375159	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
1169	chr5	81289740	81291568	+	0	NA	intron (NM_031482, intron 2 of 7)	intron (NM_031482, intron 2 of 7)	22810	NM_001131028	83734	Hs.713698	XM_005248610	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
3816	chr12	88186894	88187490	+	0	NA	Intergenic	Intergenic	-8704	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
118	chr1	197952948	197954841	+	0	NA	Intergenic	Intergenic	67377	NM_020204	56956	Hs.706475	XM_005245349	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
1674	chr1	7176763	7178932	+	0	NA	intron (NM_015215, intron 4 of 22)	intron (NM_015215, intron 4 of 22)	332463	NR_038934	23261	Hs.671020	NM_001195563	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
4872	chr7	106065448	106066420	+	0	NA	Intergenic	Intergenic	-140296	NM_005746	10135	Hs.489615	XM_005250100	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
1065	chr4	41596116	41597388	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-18037	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
1659	chr1	202068496	202088731	+	0	NA	Intergenic	Intergenic	-13416	NM_004767	9283	Hs.132049	NM_004767		GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
767	chr2	159697425	159700150	+	0	NA	Intergenic	Intergenic	46958	NM_001017920	92196	Hs.59761	XM_005246949	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
4396	chr22	46414253	46415869	+	0	NA	Intergenic	Intergenic	12565	NR_027240	730668	Hs.640071	NR_027240		LOC730668	-	dynein heavy chain -like pseudogene	pseudo
2173	chr15	88780773	88785731	+	0	NA	intron (NM_001007156, intron 3 of 15)	intron (NM_001007156, intron 3 of 15)	-12709	NR_038229	283738	Hs.578429	NR_038229	ENSG00000260305	NTRK3-AS1	RP11-356B18.2	NTRK3 antisense RNA 1	ncRNA
1020	chr4	129379963	129384473	+	0	NA	Intergenic	Intergenic	-172234	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
805	chr2	237478377	237480089	+	0	NA	intron (NM_020311, intron 1 of 1)	intron (NM_020311, intron 1 of 1)	853	NM_020311	57007	Hs.471751	XM_005246097	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
84	chr1	151817841	151819687	+	0	NA	TTS (NM_182578)	TTS (NM_182578)	-5731	NM_001136003	100191040	Hs.694717	NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium-dependent domain containing 4D	protein-coding
4068	chr18	10798547	10798984	+	0	NA	intron (NM_022068, intron 11 of 51)	intron (NM_022068, intron 11 of 51)	272892	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	N-ethylmaleimide-sensitive factor attachment protein, gamma	protein-coding
437	chr13	102306058	102309056	+	0	NA	intron (NM_004791, intron 7 of 10)	intron (NM_004791, intron 7 of 10)	165254	NM_001271756	9358	Hs.696554	XM_005254100	ENSG00000198542	ITGBL1	OSCP|TIED	integrin, beta-like 1 (with EGF-like repeat domains)	protein-coding
194	chr10	80382629	80384885	+	0	NA	Intergenic	Intergenic	356672	NR_073447	414243	Hs.55047	NR_073447	ENSG00000227136	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
3503	chr1	61597839	61599863	+	0	NA	intron (NM_001134673, intron 2 of 10)	intron (NM_001134673, intron 2 of 10)	50871	NM_001134673	4774	Hs.744898	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
2749	chr3	50645865	50650975	+	0	NA	promoter-TSS (NM_001243926)	promoter-TSS (NM_001243926)	842	NM_013324	1154	Hs.655334	XM_005264846	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2-containing protein	protein-coding
1768	chr1	201671688	201675836	+	0	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-14874	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
4129	chr2	72498412	72499390	+	0	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-123910	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
2395	chr2	43382403	43409010	+	0	NA	Intergenic	Intergenic	58039	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
1021	chr4	159234395	159237084	+	0	NA	Intergenic	Intergenic	104338	NM_018342	55314	Hs.176227	XM_005263110	ENSG00000164124	TMEM144	-	transmembrane protein 144	protein-coding
4937	chr9	2808193	2811831	+	0	NA	intron (NM_014878, intron 16 of 17)	intron (NM_014878, intron 16 of 17)	34118	NM_014878	9933	Hs.493309	XM_005251635	ENSG00000080608	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
4212	chr2	103602661	103603199	+	0	NA	Intergenic	AluSg7|SINE|Alu	224440	NM_144632	130827	Hs.436203	XM_005263874	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
934	chr3	31211753	31213685	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-276566	NM_207359	339896	Hs.657052	NM_207359	ENSG00000144644	GADL1	-	glutamate decarboxylase-like 1	protein-coding
1989	chr12	7996949	8015516	+	0	NA	intron (NM_001286237, intron 1 of 9)	intron (NM_001286237, intron 1 of 9)	19403	NM_153449	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
4035	chr17	28036370	28037141	+	0	NA	intron (NM_001282129, intron 3 of 15)	intron (NM_001282129, intron 3 of 15)	51695	NM_001282131	85464	Hs.654754	XM_005258058	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
3537	chr1	160512107	160512894	+	0	NA	3' UTR (NM_003874, exon 7 of 7)	3' UTR (NM_003874, exon 7 of 7)	-19448	NM_052931	114836	Hs.492348	XM_005244865	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
4821	chr6	160797821	160799314	+	0	NA	intron (NM_021977, intron 1 of 10)	intron (NM_021977, intron 1 of 10)	29162	NM_021977	6581	Hs.567337	XM_005267106	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 (organic cation transporter), member 3	protein-coding
948	chr3	64296817	64297998	+	0	NA	Intergenic	Intergenic	-86276	NM_198859	166336	Hs.148105	XM_005264910	ENSG00000163637	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
4120	chr19	46635604	46637711	+	0	NA	Intergenic	LTR10C|LTR|ERV1	-8726	NM_207393	388555	Hs.365496	NM_207393	ENSG00000188624	IGFL3	UNQ483	IGF-like family member 3	protein-coding
2160	chr14	96669952	96673755	+	0	NA	intron (NM_000623, intron 1 of 2)	intron (NM_000623, intron 1 of 2)	718	NM_000623	624	Hs.726620	XM_005267979	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
3785	chr12	20036607	20037326	+	0	NA	Intergenic	Intergenic	-130653	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
2450	chr2	33294272	33296314	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-64371	NM_001166264	4052	Hs.619315	XM_005264315	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
1398	chr7	29608213	29609976	+	0	NA	Intergenic	Intergenic	5667	NM_175887	222171	Hs.91109	XM_005249653	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
3986	chr16	53113306	53115914	+	0	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	25665	NM_025134	80205	Hs.622347	XM_005256168	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
226	chr11	4714412	4719790	+	0	NA	intron (NM_030774, intron 1 of 1)	L2|LINE|L2	1975	NM_030774	81285	Hs.606330	NM_030774	ENSG00000167332	OR51E2	OR51E3P|OR52A2|PSGR	olfactory receptor, family 51, subfamily E, member 2	protein-coding
4296	chr20	40271670	40272954	+	0	NA	Intergenic	Intergenic	-25179	NM_032221	84181	Hs.740645	XM_005260573	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
4982	chr9	123379039	123381765	+	0	NA	intron (NM_001080497, intron 3 of 5)	L2|LINE|L2	-37954	NR_073557	55755	Hs.269560	NM_001011649	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
527	chr16	22412187	22415380	+	0	NA	Intergenic	Intergenic	-27845	NM_001802	1039	Hs.513430	NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration-related protein 2, 62kDa	protein-coding
1430	chr7	117950781	117953339	+	0	NA	Intergenic	Intergenic	87348	NM_019644	56311	Hs.729340	XM_005250499	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
1145	chr5	16507980	16511097	+	0	NA	promoter-TSS (NM_019000)	promoter-TSS (NM_019000)	-431	NM_019000	54463	Hs.481704	XM_005248312	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
1870	chr10	58381526	58383540	+	0	NA	Intergenic	Intergenic	-261499	NM_001005413	11130	Hs.591363	XM_005269463	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
3229	chr7	27716604	27720205	+	0	NA	Intergenic	Intergenic	-15784	NM_152740	11112	Hs.406758	XM_005249595	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
2466	chr2	56184619	56186665	+	0	NA	Intergenic	Intergenic	24569	NR_029630	406999		NR_029630	ENSG00000207548	MIR217	MIRN217|mir-217	microRNA 217	ncRNA
62	chr1	110729694	110731938	+	0	NA	intron (NM_001010898, intron 6 of 11)	MER46C|DNA|TcMar-Tigger	21793	NR_046546	100873974	Hs.130515	NR_046546		KCNC4-AS1	-	KCNC4 antisense RNA 1 (head to head)	ncRNA
833	chr20	11479135	11480895	+	0	NA	Intergenic	Intergenic	-225984	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
4794	chr6	114106867	114107921	+	0	NA	Intergenic	Intergenic	-71133	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
4513	chr4	13596761	13601291	+	0	NA	intron (NM_148894, intron 10 of 25)	intron (NM_148894, intron 10 of 25)	30302	NM_148894	259282	Hs.744935	XM_005248150	ENSG00000038219	BOD1L1	BOD1L|FAM44A	biorientation of chromosomes in cell division 1-like 1	protein-coding
2743	chr3	39850130	39852155	+	0	NA	promoter-TSS (NM_015460)	promoter-TSS (NM_015460)	-9	NM_015460	25924	Hs.594535	XM_005265026	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
4588	chr4	173934163	173936204	+	0	NA	intron (NM_001034845, intron 11 of 12)	intron (NM_001034845, intron 11 of 12)	-154721	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
3276	chr7	116448916	116454116	+	0	NA	Intergenic	Intergenic	-51047	NM_006136	830	Hs.446123	XR_242266		CAPZA2	CAPPA2|CAPZ	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding
3649	chr10	19918555	19919187	+	0	NA	intron (NM_001142308, intron 36 of 39)	intron (NM_001142308, intron 36 of 39)	-186501	NM_001282736	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
548	chr16	65261275	65263357	+	0	NA	Intergenic	Intergenic	-106397	NM_001797	1009	Hs.116471	XM_005255761		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
3450	chr1	95534297	95535739	+	0	NA	intron (NM_144988, intron 1 of 3)	LTR24B|LTR|ERV1	3489	NM_144988	199857	Hs.408927	XM_005270582		ALG14	-	ALG14, UDP-N-acetylglucosaminyltransferase subunit	protein-coding
2575	chr20	6681493	6686573	+	0	NA	Intergenic	Intergenic	-64712	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
4641	chr5	95129326	95130156	+	0	NA	3' UTR (NM_014899, exon 12 of 12)	3' UTR (NM_014899, exon 12 of 12)	28836	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
3697	chr10	104059192	104062198	+	0	NA	intron (NM_004193, intron 3 of 39)	intron (NM_004193, intron 3 of 39)	55440	NM_001199379	8729	Hs.290243	XM_005270261	ENSG00000107862	GBF1	ARF1GEF	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
1110	chr4	160211079	160212988	+	0	NA	intron (NM_014247, intron 1 of 23)	intron (NM_014247, intron 1 of 23)	23035	NM_014247	9693	Hs.744884	XM_005263358	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
3466	chr1	245316391	245318564	+	0	NA	promoter-TSS (NM_018012)	promoter-TSS (NM_018012)	-810	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
2204	chr15	64734376	64739083	+	0	NA	intron (NM_016213, intron 11 of 12)	intron (NM_016213, intron 11 of 12)	-54890	NM_015042	23060	Hs.696256	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
1999	chr12	45661849	45664535	+	0	NA	intron (NM_001025356, intron 1 of 19)	intron (NM_001025356, intron 1 of 19)	-23274	NM_001142678	196527	Hs.505339	XM_005268706	ENSG00000177119	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
3632	chr10	75021819	75022525	+	0	NA	intron (NM_145170, intron 26 of 27)	MER44C|DNA|TcMar-Tigger	-9721	NM_016065	51021	Hs.180312	NM_016065	ENSG00000182180	MRPS16	COXPD2|MRP-S16|RPMS16	mitochondrial ribosomal protein S16	protein-coding
783	chr2	211053960	211056205	+	0	NA	intron (NM_001608, intron 10 of 10)	intron (NM_001608, intron 10 of 10)	-19031	NM_152519	151050	Hs.591638	XM_005246328	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1-like	protein-coding
1357	chr6	136809338	136813275	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	-23293	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
1152	chr5	38465406	38468332	+	0	NA	Intergenic	Intergenic	21291	NM_182801	133584	Hs.20103	NM_182799	ENSG00000164318	EGFLAM	AGRINL|AGRNL	EGF-like, fibronectin type III and laminin G domains	protein-coding
4684	chr5	155573368	155576150	+	0	NA	Intergenic	Intergenic	-179008	NM_000337	6444	Hs.644733	XM_005265965	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)	protein-coding
789	chr2	218095751	218097003	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-371595	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
49	chr1	67141842	67143383	+	0	NA	intron (NM_032291, intron 12 of 24)	intron (NM_032291, intron 12 of 24)	48489	NR_036060	100422871		NR_036060		MIR3117	-	microRNA 3117	ncRNA
2046	chr12	49607162	49609614	+	0	NA	Intergenic	AluJb|SINE|Alu	-25281	NM_006009	7846	Hs.654422	XM_005269143	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin, alpha 1a	protein-coding
2967	chr5	33146210	33149651	+	0	NA	Intergenic	Intergenic	200381	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
4860	chr7	55035268	55036132	+	0	NA	Intergenic	Intergenic	-51025	NM_201282	1956	Hs.605083	XM_005271746	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
2117	chr13	110963030	110966660	+	0	NA	intron (NM_001846, intron 3 of 47)	intron (NM_001846, intron 3 of 47)	5214	NM_001846	1284	Hs.508716	NM_001846	ENSG00000134871	COL4A2	ICH|POREN2	collagen, type IV, alpha 2	protein-coding
4398	chr3	4866030	4868787	+	0	NA	intron (NM_001099952, intron 57 of 58)	intron (NM_001099952, intron 57 of 58)	-74134	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
715	chr2	65857220	65858975	+	0	NA	Intergenic	Intergenic	-198441	NM_181784	200734	Hs.59332	XM_005264200	ENSG00000198369	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
1934	chr11	1578264	1583808	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	12114	NM_004420	1850	Hs.41688	NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
3615	chr1	240759590	240761053	+	0	NA	intron (NM_022469, intron 1 of 1)	intron (NM_022469, intron 1 of 1)	15141	NM_022469	64388	Hs.98206	XM_005273226	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
2201	chr15	63048422	63051548	+	0	NA	intron (NM_015059, intron 34 of 55)	intron (NM_015059, intron 34 of 55)	-66171	NR_029709	406965		NR_029709		MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190	microRNA 190a	ncRNA
1916	chr10	125606436	125608147	+	0	NA	intron (NM_198148, intron 3 of 13)	L2a|LINE|L2	44209	NM_198148	119587	Hs.663647	XM_005269528	ENSG00000121898	CPXM2	CPX2|UNQ676	carboxypeptidase X (M14 family), member 2	protein-coding
4232	chr2	158102533	158103942	+	0	NA	Intergenic	Intergenic	-11103	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5|GALNACT5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
23	chr1	5671105	5672923	+	0	NA	Intergenic	Intergenic	47883	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
1722	chr1	145742491	145745619	+	0	NA	intron (NM_002614, intron 2 of 9)	intron (NM_002614, intron 2 of 9)	16389	NM_001201326	5174	Hs.732345	XM_005272968	ENSG00000174827	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
364	chr12	70359640	70361295	+	0	NA	Intergenic	Intergenic	187735	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
3931	chr15	50454702	50459950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17067	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	solute carrier family 27 (fatty acid transporter), member 2	protein-coding
3069	chr6	119766407	119768992	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	44768	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
4568	chr4	129490004	129491045	+	0	NA	Intergenic	Intergenic	-240254	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
950	chr3	66101075	66102637	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-17429	NM_173471	115286	Hs.379386	NM_001009938	ENSG00000144741	SLC25A26	SAMC	solute carrier family 25 (S-adenosylmethionine carrier), member 26	protein-coding
2680	chr22	28112886	28116439	+	0	NA	Intergenic	Intergenic	82824	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
2957	chr5	5139575	5141593	+	0	NA	promoter-TSS (NR_109915)	promoter-TSS (NR_109915)	141	NM_139056	170690	Hs.661915	NM_139056	ENSG00000145536	ADAMTS16	ADAMTS16s	ADAM metallopeptidase with thrombospondin type 1 motif, 16	protein-coding
1445	chr7	141564123	141565600	+	0	NA	Intergenic	L1MC5|LINE|L1	-23640	NM_001171951	136242	Hs.98947	XM_005249946	ENSG00000165076	PRSS37	TRYX2	protease, serine, 37	protein-coding
1678	chr1	7608112	7613026	+	0	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-220760	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
1845	chr10	5673200	5675624	+	0	NA	Intergenic	Intergenic	34146	NR_037164	79754	Hs.445899	NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
1025	chr4	15078454	15080771	+	0	NA	Intergenic	L1MB1|LINE|L1	75314	NM_001177381	132864	Hs.656937	XM_005248135	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
4692	chr5	172243556	172244748	+	0	NA	Intergenic	Intergenic	-17071	NM_001031711	57222	Hs.509163	NM_001031711	ENSG00000113719	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
3429	chrX	106957389	106962160	+	0	NA	promoter-TSS (NM_001015881)	promoter-TSS (NM_001015881)	-63	NM_001015881	1831	Hs.522074	XM_005262098	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
3580	chr1	205113620	205114626	+	0	NA	3' UTR (NM_199462, exon 12 of 12)	3' UTR (NM_199462, exon 12 of 12)	-22973	NM_001193272	5929	Hs.519230	XM_005245398	ENSG00000117222	RBBP5	RBQ3|SWD1	retinoblastoma binding protein 5	protein-coding
4375	chr21	43648313	43648927	+	0	NA	intron (NM_016818, intron 2 of 14)	intron (NM_016818, intron 2 of 14)	8612	NM_207174	9619	Hs.418279	XM_005261209	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding
3073	chr6	143162364	143168941	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	100686	NM_006734	3097	Hs.510172	XM_005266956	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
1992	chr12	15939651	15943446	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	962	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
2478	chr2	69388734	69392164	+	0	NA	intron (NM_032208, intron 13 of 17)	intron (NM_032208, intron 13 of 17)	59635	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
1466	chr8	53830893	53832566	+	0	NA	Intergenic	LTR41|LTR|ERVL	-20739	NM_005285	2831	Hs.248117	NM_005285		NPBWR1	GPR7	neuropeptides B/W receptor 1	protein-coding
4248	chr2	204513857	204516318	+	0	NA	Intergenic	Intergenic	-56111	NM_006139	940	Hs.443123	XM_005246969	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
2340	chr18	29928990	29930502	+	0	NA	intron (NM_001242409, intron 2 of 5)	intron (NM_001242409, intron 2 of 5)	120701	NM_022751	64762	Hs.444314	XM_005258328	ENSG00000141441	GAREM	C18orf11|FAM59A|Gm944	GRB2 associated, regulator of MAPK1	protein-coding
4534	chr4	24471890	24473054	+	0	NA	Intergenic	CpG	49441	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
778	chr2	203671715	203673470	+	0	NA	intron (NM_001288622, intron 9 of 12)	L1M1|LINE|L1	21365	NM_001288624	130026	Hs.516629	XM_005246290	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1,69kDa-like	protein-coding
3555	chr1	183688324	183689505	+	0	NA	intron (NM_015149, intron 1 of 18)	AluSx|SINE|Alu	-66466	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
720	chr2	68821258	68822910	+	0	NA	Intergenic	Intergenic	-50870	NM_138964	10887	Hs.683430	XM_005264101	ENSG00000169618	PROKR1	GPR73|GPR73a|PKR1|ZAQ	prokineticin receptor 1	protein-coding
4430	chr3	50306035	50308211	+	0	NA	intron (NM_001005914, intron 2 of 17)	intron (NM_001005914, intron 2 of 17)	2083	NM_004636	7869	Hs.82222	XM_005277528		SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding
2449	chr2	32036416	32038621	+	0	NA	Intergenic	Intergenic	198180	NM_015955	51072	Hs.444969	XM_005264351	ENSG00000162959	MEMO1	C2orf4|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
460	chr14	58300122	58302004	+	0	NA	intron (NM_001206920, intron 1 of 7)	intron (NM_001206920, intron 1 of 7)	31529	NM_001206920	341880	Hs.28280	XM_005267585	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35, member F4	protein-coding
4627	chr5	67614445	67616654	+	0	NA	Intergenic	Intergenic	27153	NM_001242466	5295	Hs.734132	XM_005248542	ENSG00000145675	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
244	chr11	4703314	4710638	+	0	NA	intron (NM_030774, intron 1 of 1)	intron (NM_030774, intron 1 of 1)	12100	NM_030774	81285	Hs.606330	NM_030774	ENSG00000167332	OR51E2	OR51E3P|OR52A2|PSGR	olfactory receptor, family 51, subfamily E, member 2	protein-coding
4107	chr19	35738158	35741164	+	0	NA	5' UTR (NM_205834, exon 1 of 10)	5' UTR (NM_205834, exon 1 of 10)	102	NM_205834	51599	Hs.466507	XM_005258980	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
4168	chr2	40101768	40103221	+	0	NA	Intergenic	Intergenic	-42280	NR_038441	100128590	Hs.744988	XR_244915	ENSG00000227028	SLC8A1-AS1	AC007254.3	SLC8A1 antisense RNA 1	ncRNA
4838	chr7	7214776	7218158	+	0	NA	Intergenic	Intergenic	-5779	NM_020156	56913	Hs.239666	XM_005249812	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding
3744	chr11	111793732	111796187	+	0	NA	intron (NR_037651, intron 2 of 4)	intron (NR_037651, intron 2 of 4)	-2909	NM_001278542	85458	Hs.655626	XM_005277726	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
3220	chr7	142816975	142819417	+	0	NA	Intergenic	MER4A1_|LTR|ERV1	-10978	NM_002652	5304	Hs.99949	NM_002652	ENSG00000159763	PIP	GCDFP-15|GCDFP15|GPIP4	prolactin-induced protein	protein-coding
2811	chr3	151507397	151509114	+	0	NA	intron (NR_110203, intron 1 of 2)	L1MEd|LINE|L1	20011	NR_026915	201651	Hs.383050	NR_026915	ENSG00000240602	LOC201651	-	arylacetamide deacetylase (esterase) pseudogene	pseudo
3854	chr13	102399090	102400406	+	0	NA	intron (NM_175929, intron 3 of 4)	L2b|LINE|L2	169247	NM_004115	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
4901	chr8	40582849	40584915	+	0	NA	intron (NM_001135731, intron 3 of 5)	intron (NM_001135731, intron 3 of 5)	171461	NM_024645	79698	Hs.591850	XM_005273643	ENSG00000165061	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
1607	chrX	139121854	139123364	+	0	NA	Intergenic	L1M1|LINE|L1	-51217	NM_001271560	389895	Hs.127679	NM_001271560		LOC389895	-	chromosome 16 open reading frame 72-like	protein-coding
1386	chr7	156319651	156321202	+	0	NA	intron (NR_103858, intron 1 of 1)	intron (NR_103858, intron 1 of 1)	-12759	NR_024119	64433	Hs.404170	NR_024119		LINC00244	C7orf4|NCRNA00244	long intergenic non-protein coding RNA 244	ncRNA
1536	chr9	87863527	87864957	+	0	NA	Intergenic	LTR1B|LTR|ERV1	492702	NM_001286715	23287	Hs.719980	XM_005251845	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
3893	chr14	65133611	65134325	+	0	NA	Intergenic	AluSg|SINE|Alu	-37225	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
2617	chr20	11196385	11199771	+	0	NA	Intergenic	Intergenic	55953	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
4187	chr2	67788080	67788895	+	0	NA	Intergenic	Intergenic	164045	NM_019002	54465	Hs.353022	XM_005264374	ENSG00000143971	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
452	chr14	25451131	25452049	+	0	NA	intron (NM_014178, intron 1 of 5)	intron (NM_014178, intron 1 of 5)	67505	NM_014178	29091	Hs.508958	XM_005267556	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
579	chr17	20092156	20096275	+	0	NA	intron (NM_001033554, intron 1 of 5)	L1MC1|LINE|L1	34908	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
295	chr11	115363117	115365099	+	0	NA	intron (NM_014333, intron 1 of 9)	L1MC4|LINE|L1	11133	NM_014333	23705	Hs.370510	XM_005271491	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
3956	chr15	78666114	78668337	+	0	NA	Intergenic	Intergenic	34559	NM_004378	1381	Hs.346950	NM_004378	ENSG00000166426	CRABP1	CRABP|CRABP-I|CRABPI|RBP5	cellular retinoic acid binding protein 1	protein-coding
1618	chrY	24900722	24903220	+	0	NA	Intergenic	Intergenic	-95760	NR_002179	474152	Hs.741142	NR_002179	ENSG00000223641	TTTY17C	NCRNA00142	testis-specific transcript, Y-linked 17C (non-protein coding)	ncRNA
4701	chr5	175263228	175266752	+	0	NA	intron (NM_006650, intron 2 of 4)	L2a|LINE|L2	-33511	NM_001008220	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
3301	chr8	40198022	40201650	+	0	NA	Intergenic	AluJr|SINE|Alu	188849	NM_020130	56892	Hs.745031	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
3136	chr6	52406967	52410371	+	0	NA	intron (NM_012288, intron 1 of 10)	L5|LINE|RTE	33193	NM_012288	9697	Hs.520182	NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
77	chr1	145434491	145436096	+	0	NA	intron (NM_001039703, intron 68 of 85)	intron (NM_001039703, intron 68 of 85)	-3145	NM_006472	10628	Hs.709057	NM_006472	ENSG00000117289	TXNIP	EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
541	chr16	12280724	12283526	+	0	NA	intron (NM_032167, intron 13 of 20)	MIRb|SINE|MIR	211523	NM_032167	92017	Hs.458401	XM_005255682	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
4317	chr20	11197084	11198626	+	0	NA	Intergenic	Intergenic	56176	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
3890	chr14	54309872	54310644	+	0	NA	Intergenic	Intergenic	104944	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
897	chr22	39183749	39185537	+	0	NA	intron (NM_005740, intron 1 of 3)	intron (NM_005740, intron 1 of 3)	5518	NM_005740	10126	Hs.632766	NM_005740	ENSG00000100246	DNAL4	PIG27	dynein, axonemal, light chain 4	protein-coding
1628	chr1	23607950	23611670	+	0	NA	Intergenic	Intergenic	61043	NM_001102398	10236	Hs.373763	XM_005245711	ENSG00000125944	HNRNPR	HNRPR|hnRNP R|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
3219	chr7	141359674	141367171	+	0	NA	intron (NM_001080392, intron 8 of 8)	intron (NM_001080392, intron 8 of 8)	38531	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
3911	chr14	96626023	96627727	+	0	NA	Intergenic	L1ME4a|LINE|L1	-44260	NM_000623	624	Hs.726620	XM_005267979	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
3871	chr13	110778358	110779374	+	0	NA	Intergenic	Intergenic	180630	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
3671	chr10	71108164	71110097	+	0	NA	intron (NM_033498, intron 5 of 20)	MIRc|SINE|MIR	30527	NM_000188	3098	Hs.370365	XM_005269735	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1	hexokinase 1	protein-coding
237	chr11	99843081	99846081	+	0	NA	intron (NM_001243271, intron 8 of 20)	CR1_Mam|LINE|CR1	417705	NM_175566	53942	Hs.656783	NM_001243270	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
2584	chr20	1785272	1795474	+	0	NA	Intergenic	L2a|LINE|L2	-29981	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
2722	chr3	149452569	149455114	+	0	NA	Intergenic	Intergenic	16445	NM_016094	51122	Hs.432729	XR_241494	ENSG00000114744	COMMD2	-	COMM domain containing 2	protein-coding
2371	chr19	7454809	7457862	+	0	NA	Intergenic	L2b|LINE|L2	-3664	NM_015318	23370	Hs.736818	XM_005272463	ENSG00000104880	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
2519	chr2	134177170	134181398	+	0	NA	intron (NR_107007, intron 1 of 6)	intron (NR_107007, intron 1 of 6)	16928	NR_107007	102466866		NR_107007		MIR7853	hsa-mir-7853	microRNA mir-7853	ncRNA
2923	chr4	185732984	185737390	+	0	NA	intron (NM_001995, intron 1 of 20)	AluY|SINE|Alu	-1774	NM_001286708	2180	Hs.406678	XM_005262827	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long-chain family member 1	protein-coding
2610	chr20	6677405	6681036	+	0	NA	Intergenic	Intergenic	-69525	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
416	chr13	32555725	32557354	+	0	NA	Intergenic	L2c|LINE|L2	-48898	NM_023037	10129	Hs.718654	XM_005266207	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	furry homolog (Drosophila)	protein-coding
2950	chr5	148864041	148867549	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	55586	NR_029686	406937		NR_029686	ENSG00000269936	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
4154	chr2	30456289	30457354	+	0	NA	intron (NM_030915, intron 1 of 2)	intron (NM_030915, intron 1 of 2)	2424	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
3212	chr7	84164185	84167041	+	0	NA	intron (NR_110080, intron 1 of 3)	Charlie17a|DNA|hAT-Charlie	3821	NR_110079	101927378	Hs.539042	XR_242309	ENSG00000235139	AC003984.1	-	uncharacterized LOC101927378	ncRNA
4407	chr3	4792203	4795191	+	0	NA	promoter-TSS (NR_004428)	promoter-TSS (NR_004428)	-423	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
914	chr3	197097686	197100113	+	0	NA	Intergenic	Intergenic	-73452	NM_001098424	1739	Hs.292549	XM_005269289	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
100	chr1	178008467	178010099	+	0	NA	Intergenic	AluJr|SINE|Alu	-2141	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
4756	chr6	27599982	27601715	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-60966	NR_038293	100507173	Hs.733567	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
300	chr11	122212656	122214835	+	0	NA	Intergenic	Intergenic	-139975	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
1439	chr7	135457966	135459948	+	0	NA	Intergenic	Intergenic	-25363	NM_205855	389558	Hs.55200	XM_005250338	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180, member A	protein-coding
4419	chr3	36688847	36691001	+	0	NA	Intergenic	Intergenic	91428	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
3654	chr10	25251383	25252634	+	0	NA	Intergenic	Intergenic	-10435	NM_001282786	56952	Hs.405619	XM_005252537	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
2405	chr2	33699722	33703648	+	0	NA	5' UTR (NM_001139488, exon 1 of 18)	5' UTR (NM_001139488, exon 1 of 18)	364	NM_001139488	25780	Hs.143674	XM_005264246	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
4710	chr6	43957049	43959646	+	0	NA	Intergenic	Intergenic	-9990	NM_001171992	221416	Hs.531926	NM_001171992	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
2232	chr15	96801739	96810310	+	0	NA	Intergenic	Intergenic	-63133	NM_001145155	7026	Hs.519445	NM_001145155	ENSG00000185551	NR2F2	ARP1|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
3642	chr10	12311535	12313993	+	0	NA	Intergenic	AluSq2|SINE|Alu	-74621	NM_014142	11164	Hs.555956	NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hYSAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding
4646	chr5	95743072	95744882	+	0	NA	exon (NM_001177875, exon 9 of 14)	exon (NM_001177875, exon 9 of 14)	4712	NM_001177876	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
2432	chr2	9449297	9452944	+	0	NA	intron (NM_003887, intron 3 of 27)	intron (NM_003887, intron 3 of 27)	104226	NM_003887	8853	Hs.555902	XM_005246181	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
1407	chr7	38968488	38970540	+	0	NA	Intergenic	Intergenic	-20714	NM_014396	27072	Hs.592184	NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|hVps41p	vacuolar protein sorting 41 homolog (S. cerevisiae)	protein-coding
3946	chr15	66231549	66234049	+	0	NA	intron (NM_032445, intron 10 of 22)	intron (NM_032445, intron 10 of 22)	71002	NM_004663	8766	Hs.321541	XM_005254738	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
496	chr15	71120297	71124189	+	0	NA	Intergenic	Intergenic	-23335	NM_001284357	54839	Hs.12692	XM_005254490	ENSG00000137821	LRRC49	PGs4	leucine rich repeat containing 49	protein-coding
2829	chr4	99350595	99352994	+	0	NA	intron (NM_001100427, intron 12 of 14)	MER103C|DNA|hAT-Charlie	169267	NM_001100427	5910	Hs.132858	XM_005263169	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	RAP1, GTP-GDP dissociation stimulator 1	protein-coding
605	chr18	11886548	11888453	+	0	NA	intron (NR_040241, intron 6 of 11)	intron (NR_040241, intron 6 of 11)	21296	NM_001242904	65258	Hs.734268	NM_138608	ENSG00000154889	MPPE1	PGAP5	metallophosphoesterase 1	protein-coding
2987	chr5	87971075	87973063	+	0	NA	intron (NR_015436, intron 1 of 4)	CpG	2193	NR_024383	645323	Hs.744298	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|Visc-1a|Visc-1b	long intergenic non-protein coding RNA 461	ncRNA
2581	chr20	62126242	62131484	+	0	NA	intron (NM_001958, intron 2 of 7)	intron (NM_001958, intron 2 of 7)	1805	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
4760	chr6	30674157	30676319	+	0	NA	intron (NM_014641, intron 8 of 14).2	intron (NM_014641, intron 8 of 14).2	10220	NM_014641	9656	Hs.653495	XM_005249492	ENSG00000137337	MDC1	NFBD1	mediator of DNA-damage checkpoint 1	protein-coding
4855	chr7	38254362	38256032	+	0	NA	intron (NM_032016, intron 4 of 8)	L2c|LINE|L2	37389	NM_032016	83930	Hs.744885	XM_005249880	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
1699	chr1	59393444	59400537	+	0	NA	Intergenic	MIRb|SINE|MIR	146167	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	RP4-794H19.2	long intergenic non-protein coding RNA 1135	ncRNA
42	chr1	44564594	44568443	+	0	NA	Intergenic	L1MC1|LINE|L1	-18004	NM_173484	128209	Hs.567674	XM_005270464	ENSG00000171872	KLF17	ZNF393|Zfp393	Kruppel-like factor 17	protein-coding
759	chr2	112298748	112301067	+	0	NA	Intergenic	Intergenic	-47215	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
4898	chr7	158804883	158806155	+	0	NA	intron (NR_024394, intron 1 of 4)	intron (NR_024394, intron 1 of 4)	4474	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
1228	chr5	158767337	158769796	+	0	NA	intron (NR_037889, intron 2 of 4)	intron (NR_037889, intron 2 of 4)	10040	NR_037889	285626	Hs.449275	NR_037889	ENSG00000249738	AC008697.1	-	uncharacterized LOC285626	ncRNA
235	chr11	74153228	74155173	+	0	NA	Intergenic	L2c|LINE|L2	24400	NM_005472	10008	Hs.523899	NM_005472	ENSG00000175538	KCNE3	HOKPP|HYPP|MiRP2	potassium voltage-gated channel, Isk-related family, member 3	protein-coding
2291	chr17	16052636	16054359	+	0	NA	intron (NM_001190440, intron 7 of 44)	L4|LINE|RTE	44456	NM_001190440	9611	Hs.462323	XM_005256866	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
2591	chr20	18231284	18235608	+	0	NA	Intergenic	Intergenic	-35481	NM_001282996	7692	Hs.472221	XM_005260813	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
1931	chr11	94961009	94964508	+	0	NA	promoter-TSS (NR_110295)	promoter-TSS (NR_110295)	-592	NR_110295	100129203	Hs.191599	XR_110904	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
694	chr2	30464888	30468029	+	0	NA	intron (NM_030915, intron 2 of 2)	AluSx1|SINE|Alu	12061	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
1103	chr4	149710881	149713136	+	0	NA	Intergenic	Intergenic	-348336	NM_001166104	4306	Hs.163924	XM_005263014	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
4444	chr3	71189696	71191281	+	0	NA	intron (NM_001244808, intron 6 of 20)	intron (NM_001244808, intron 6 of 20)	-10396	NM_001244815	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
4268	chr2	234607120	234611033	+	0	NA	intron (NM_001072, intron 1 of 4)	intron (NM_001072, intron 1 of 4)	7564	NM_001072	54578	Hs.554822	NM_001072	ENSG00000167165	UGT1A6	GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F	UDP glucuronosyltransferase 1 family, polypeptide A6	protein-coding
3788	chr12	20541782	20544193	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	20808	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
3148	chr6	82160573	82162626	+	0	NA	Intergenic	Intergenic	300829	NM_017633	55603	Hs.10784	XM_005248731	ENSG00000112773	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
2244	chr16	9442858	9446199	+	0	NA	Intergenic	SVA_A|Other|Other	115754	NR_036166	100422920		NR_036166	ENSG00000265841	MIR548X	-	microRNA 548x	ncRNA
296	chr11	115367356	115368674	+	0	NA	intron (NM_014333, intron 1 of 9)	intron (NM_014333, intron 1 of 9)	7226	NM_014333	23705	Hs.370510	XM_005271491	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
265	chr11	39269370	39270569	+	0	NA	Intergenic	AluSq|SINE|Alu	1044711	NR_047674	57689	Hs.745123	XM_005253030	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
171	chr10	20586792	20589276	+	0	NA	Intergenic	Intergenic	-252865	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	ncRNA
3999	chr16	67029788	67031049	+	0	NA	intron (NM_173815, intron 2 of 11)	intron (NM_173815, intron 2 of 11)	-3998	NM_001190202	283848	Hs.734986	XM_005255895	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
4327	chr20	19914926	19917168	+	0	NA	intron (NM_001242581, intron 3 of 11)	intron (NM_001242581, intron 3 of 11)	45837	NM_018993	54453	Hs.472270	XM_005260729	ENSG00000132669	RIN2	MACS|RASSF4|RP1-122P22.2	Ras and Rab interactor 2	protein-coding
4206	chr2	97379252	97381681	+	0	NA	intron (NR_024518, intron 3 of 7)	intron (NR_024518, intron 3 of 7)	25347	NR_024521	81562	Hs.655743	NM_001142292	ENSG00000114988	LMAN2L	VIPL	lectin, mannose-binding 2-like	protein-coding
2687	chr22	18538121	18541430	+	0	NA	Intergenic	Intergenic	-20911	NM_017929	55670	Hs.517400	XM_005261253		PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
2012	chr12	98926120	98928280	+	0	NA	exon (NM_003276, exon 4 of 4)	exon (NM_003276, exon 4 of 4)	-17196	NR_027157	100128191	Hs.594042	NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
3201	chr6	167732590	167735239	+	0	NA	Intergenic	Intergenic	-4660	NM_031949	83887	Hs.520554	NM_031949		TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase-like family, member 2	protein-coding
582	chr17	28696730	28698458	+	0	NA	Intergenic	AluJb|SINE|Alu	-8348	NM_001304	1362	Hs.446079	NM_001199775	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
3257	chr7	91186007	91188676	+	0	NA	Intergenic	Intergenic	293558	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled family receptor 1	protein-coding
1884	chr10	75350338	75353199	+	0	NA	Intergenic	Intergenic	-16335	NM_152586	159195	Hs.657355	XM_005269578	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
4868	chr7	98038780	98039853	+	0	NA	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-8889	NM_018842	55971	Hs.656063	XM_005250495	ENSG00000006453	BAIAP2L1	IRTKS	BAI1-associated protein 2-like 1	protein-coding
4167	chr2	39721072	39723553	+	0	NA	intron (NR_037875, intron 3 of 5)	intron (NR_037875, intron 3 of 5)	57755	NR_037875	728730	Hs.655344	XR_244956	ENSG00000231312	AC007246.3	-	uncharacterized LOC728730	ncRNA
557	chr16	66115122	66116831	+	0	NA	Intergenic	Intergenic	-284549	NM_001795	1003	Hs.76206	XM_005255757	ENSG00000179776	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
3621	chr10	5323845	5330731	+	0	NA	Intergenic	Intergenic	-79688	NM_053049	114131	Hs.511775	NM_053049	ENSG00000178473	UCN3	SCP|SPC|UCNIII	urocortin 3	protein-coding
2726	chr3	159840371	159854370	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	77509	NR_108088	101928376	Hs.565865	XR_241609	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
441	chr14	38287527	38289707	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-224292	NM_004496	3169	Hs.163484	XM_005267575	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
4041	chr17	46132039	46133459	+	0	NA	intron (NM_003204, intron 2 of 5)	intron (NM_003204, intron 2 of 5)	7063	NM_003204	4779	Hs.514284	XM_005257410	ENSG00000082641	NFE2L1	LCR-F1|NRF1|TCF11	nuclear factor, erythroid 2-like 1	protein-coding
3325	chr9	35468941	35472589	+	0	NA	intron (NR_003581, intron 12 of 17)	intron (NR_003581, intron 12 of 17)	-19242	NM_014806	9853	Hs.493796	NM_001135999	ENSG00000198853	RUSC2	Iporin	RUN and SH3 domain containing 2	protein-coding
672	chr2	1556653	1559145	+	0	NA	Intergenic	LTR24|LTR|ERV1	139719	NM_175721	7173	Hs.467554	XM_005264698	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
983	chr3	159541071	159544127	+	0	NA	intron (NM_001197113, intron 5 of 10)	intron (NM_001197113, intron 5 of 10)	-15051	NM_001197109	29970	Hs.134665	XM_005247405	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
4257	chr2	219827938	219829537	+	0	NA	Intergenic	Intergenic	4387	NM_003936	8941	Hs.158460	NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding
3806	chr12	67948795	67949779	+	0	NA	intron (NR_103861, intron 2 of 2)	L1PA7|LINE|L1	35425	NR_103861	100507175	Hs.730491	NR_103861	ENSG00000203585	RP11-542B15.1	-	uncharacterized LOC100507175	ncRNA
3689	chr10	93367645	93369443	+	0	NA	intron (NR_024467, intron 1 of 4)	intron (NR_024467, intron 1 of 4)	2673	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
4482	chr3	122479177	122481053	+	0	NA	intron (NM_024610, intron 3 of 7)	intron (NM_024610, intron 3 of 7)	32551	NM_024610	79663	Hs.29169	XM_005247761	ENSG00000169087	HSPBAP1	PASS1	HSPB (heat shock 27kDa) associated protein 1	protein-coding
3496	chr1	45166410	45167774	+	0	NA	intron (NM_001145636, intron 5 of 11)	intron (NM_001145636, intron 5 of 11)	26698	NM_001145636	339541	Hs.173679	XM_005270804	ENSG00000198520	C1orf228	NCRNA00082|p40	chromosome 1 open reading frame 228	protein-coding
751	chr2	100278882	100280481	+	0	NA	intron (NM_002285, intron 11 of 23)	intron (NM_002285, intron 11 of 23)	-173201	NM_001037872	51455	Hs.443077	XM_005263967	ENSG00000135945	REV1	REV1L	REV1, polymerase (DNA directed)	protein-coding
1746	chr1	179142903	179145631	+	0	NA	intron (NM_007314, intron 1 of 11)	AluJr|SINE|Alu	-32043	NM_001136000	27	Hs.159472	XM_005245088	ENSG00000143322	ABL2	ABLL|ARG	c-abl oncogene 2, non-receptor tyrosine kinase	protein-coding
4551	chr4	82392429	82393552	+	0	NA	promoter-TSS (NM_152545)	promoter-TSS (NM_152545)	71	NM_152545	153020	Hs.591696	XM_005262776	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
4300	chr20	515948	517628	+	0	NA	intron (NM_177559, intron 1 of 13)	intron (NM_177559, intron 1 of 13)	7694	NM_177560	1457	Hs.644056	NM_001895		CSNK2A1	CK2A1|CKII|CSNK2A3	casein kinase 2, alpha 1 polypeptide	protein-coding
3356	chr9	72286534	72288728	+	0	NA	promoter-TSS (NM_001163)	promoter-TSS (NM_001163)	-356	NM_001163	320	Hs.592974	XM_005251967	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
2167	chr15	64812447	64816850	+	0	NA	intron (NM_015042, intron 1 of 8)	intron (NM_015042, intron 1 of 8)	23029	NM_015042	23060	Hs.696256	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
1980	chr11	126208523	126212844	+	0	NA	TTS (NR_033839)	TTS (NR_033839)	14799	NR_033839	399972	Hs.585206	NR_033839		ST3GAL4-AS1	DCPS-AS1	ST3GAL4 antisense RNA 1 (head to head)	ncRNA
2275	chr17	60880795	60883515	+	0	NA	intron (NM_001288779, intron 1 of 11)	intron (NM_001288779, intron 1 of 11)	1859	NM_001100875	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
4004	chr16	73129530	73130564	+	0	NA	Intergenic	Intergenic	3799	NR_027756	283902	Hs.382776	NM_001101347	ENSG00000260880	HCCAT5	FJ222407|HTA|RP11-346C20.2	hepatocellular carcinoma associated transcript 5 (non-protein coding)	ncRNA
4890	chr7	134832006	134833657	+	0	NA	promoter-TSS (NM_018295)	promoter-TSS (NM_018295)	65	NM_018295	55281	Hs.521213	NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
5024	chrX	153311209	153313818	+	0	NA	intron (NM_001110792, intron 1 of 2)	HAL1b|LINE|L1	-27073	NR_031757	100313781		NR_031757	ENSG00000211524	MIR718	hsa-mir-718	microRNA 718	ncRNA
677	chr2	1732980	1735478	+	0	NA	intron (NM_012293, intron 1 of 22)	intron (NM_012293, intron 1 of 22)	14062	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
907	chr3	100103902	100106498	+	0	NA	intron (NM_014820, intron 2 of 11)	intron (NM_014820, intron 2 of 11)	-14837	NM_001085451	348801	Hs.591294	NM_001085451	ENSG00000206535	LNP1	-	leukemia NUP98 fusion partner 1	protein-coding
1868	chr10	45475735	45478959	+	0	NA	intron (NM_032023, intron 3 of 10)	intron (NM_032023, intron 3 of 10)	-3017	NM_007021	11067	Hs.93675	NM_007021	ENSG00000165507	C10orf10	DEPP|FIG	chromosome 10 open reading frame 10	protein-coding
3480	chr1	21655630	21656636	+	0	NA	intron (NM_001113348, intron 1 of 18)	MIRb|SINE|MIR	15901	NM_001113348	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
3154	chr6	107138977	107141673	+	0	NA	Intergenic	Intergenic	62884	NM_018292	55278	Hs.406917	NM_018292	ENSG00000130348	QRSL1	GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding
590	chr17	63187759	63190309	+	0	NA	intron (NM_001081955, intron 11 of 18)	intron (NM_001081955, intron 11 of 18)	55578	NM_001081955	8787	Hs.664380	NM_001081955	ENSG00000108370	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
1210	chr5	144725365	144726617	+	0	NA	Intergenic	Intergenic	488941	NM_138492	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
4201	chr2	76419082	76420280	+	0	NA	Intergenic	Intergenic	-481570	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
664	chr2	189462917	189465229	+	0	NA	Intergenic	Intergenic	190758	NM_052952	116093	Hs.470892	NM_052952		DIRC1	-	disrupted in renal carcinoma 1	protein-coding
1790	chr1	220473332	220474733	+	0	NA	Intergenic	Intergenic	-28189	NM_012414	25782	Hs.708165	NM_012414	ENSG00000118873	RAB3GAP2	RAB3-GAP150|RAB3GAP150|WARBM2|p150	RAB3 GTPase activating protein subunit 2 (non-catalytic)	protein-coding
4363	chr21	30550181	30551055	+	0	NA	Intergenic	Intergenic	-15197	NR_027072	193629	Hs.720711	NR_027072	ENSG00000215533	LINC00189	C21orf109|NCRNA00189	long intergenic non-protein coding RNA 189	ncRNA
2264	chr16	80056588	80059940	+	0	NA	Intergenic	MIRb|SINE|MIR	229118	NR_104661	101928248	Hs.659802	XR_243479		LOC101928248	-	uncharacterized LOC101928248	ncRNA
79	chr1	147694163	147695715	+	0	NA	intron (NR_102405, intron 16 of 17).2	intron (NR_102405, intron 16 of 17).2	-70338	NR_046188	200030	Hs.744018	XM_005272933	ENSG00000152042	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
3845	chr12	130614451	130618276	+	0	NA	Intergenic	LTR33A|LTR|ERVL	29860	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
1420	chr7	99631971	99634724	+	0	NA	3' UTR (NM_003439, exon 6 of 6)	3' UTR (NM_003439, exon 6 of 6)	-14070	NM_145914	7589	Hs.632294	XM_005250566	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
3295	chr8	101347718	101352037	+	0	NA	Intergenic	Intergenic	-1431	NM_001280539	25897	Hs.292882	XM_005250853	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
3437	chrX	151070161	151072677	+	0	NA	Intergenic	Intergenic	-9942	NM_001011548	4103	Hs.37107	XM_005274677	ENSG00000147381	MAGEA4	CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B	melanoma antigen family A, 4	protein-coding
352	chr12	27329517	27333972	+	0	NA	Intergenic	Intergenic	-65334	NM_015000	23012	Hs.184523	XM_005253342	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
2502	chr2	101401543	101403885	+	0	NA	Intergenic	Intergenic	-33899	NM_002518	4862	Hs.705895	XM_005263953	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
3865	chr13	99141549	99143471	+	0	NA	intron (NM_003576, intron 2 of 10)	MER34A|LTR|ERV1	31869	NM_003576	8428	Hs.508514	XM_005254077	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
126	chr1	205216929	205220818	+	0	NA	intron (NM_014858, intron 2 of 4)	intron (NM_014858, intron 2 of 4)	20814	NM_001242925	9911	Hs.6360	XM_005245684	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
1034	chr4	23374445	23376769	+	0	NA	intron (NR_039674, intron 1 of 2)	L2c|LINE|L2	89119	NR_039674	100616252		NR_039674	ENSG00000221466	MIR548AJ2	-	microRNA 548aj-2	ncRNA
2803	chr3	131852741	131856790	+	0	NA	Intergenic	Intergenic	-96315	NM_153429	131034	Hs.199877	XM_005247105	ENSG00000196353	CPNE4	COPN4|CPN4	copine IV	protein-coding
2875	chr4	74484206	74487429	+	0	NA	intron (NM_001270392, intron 1 of 9)	intron (NM_001270392, intron 1 of 9)	470	NM_177532	166824	Hs.529677	NM_001270391	ENSG00000169435	RASSF6	-	Ras association (RalGDS/AF-6) domain family member 6	protein-coding
1533	chr9	85895610	85897108	+	0	NA	intron (NM_001244960, intron 13 of 13)	intron (NM_001244960, intron 13 of 13)	-14157	NM_001244962	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
3679	chr10	77845810	77847625	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	304198	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
651	chr19	43790763	43792249	+	0	NA	Intergenic	Intergenic	-17824	NM_002784	5678	Hs.502092	XM_005259074	ENSG00000183668	PSG9	PS34|PSBG-11|PSBG-9|PSG11|PSGII	pregnancy specific beta-1-glycoprotein 9	protein-coding
176	chr10	24206759	24208592	+	0	NA	intron (NM_001098500, intron 1 of 18)	(CA)n|Simple_repeat|Simple_repeat	224000	NM_001098500	56243	Hs.445885	XM_005252500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
4660	chr5	124379038	124380755	+	0	NA	intron (NR_109882, intron 2 of 5)	intron (NR_109882, intron 2 of 5)	7372	NR_109882	101927421	Hs.638668	XR_246576		RP11-257I8.2	-	uncharacterized LOC101927421	ncRNA
3145	chr6	76127086	76129748	+	0	NA	intron (NM_015687, intron 1 of 5)	intron (NM_015687, intron 1 of 5)	75079	NM_015687	27145	Hs.696158	XM_005248713	ENSG00000118407	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
947	chr3	64263431	64265601	+	0	NA	Intergenic	Intergenic	-53385	NM_198859	166336	Hs.148105	XM_005264910	ENSG00000163637	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
256	chr11	28734801	28737499	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-237055	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
2810	chr3	151021977	151024664	+	0	NA	intron (NM_023915, intron 1 of 2)	MIR|SINE|MIR	11316	NM_023915	53836	Hs.591292	NM_023915	ENSG00000138271	GPR87	GPR95|KPG_002	G protein-coupled receptor 87	protein-coding
920	chr3	15143138	15144959	+	0	NA	Intergenic	Intergenic	-3393	NM_022340	64145	Hs.706478	XM_005265383	ENSG00000131381	ZFYVE20	Rabenosyn-5	zinc finger, FYVE domain containing 20	protein-coding
428	chr13	48252542	48254528	+	0	NA	Intergenic	L2c|LINE|L2	321927	NM_003850	8803	Hs.743361	XM_005266579	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
4840	chr7	17735164	17737324	+	0	NA	Intergenic	Intergenic	-137711	NR_110013	101927630	Hs.583400	XR_242134		AC017060.1	-	uncharacterized LOC101927630	ncRNA
2305	chr17	60969276	60971690	+	0	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-84741	NM_152598	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
4545	chr4	57930640	57932440	+	0	NA	intron (NM_001553, intron 1 of 4)	intron (NM_001553, intron 1 of 4)	-44388	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	RP11-12A1.1	IGFBP7 antisense RNA 1	ncRNA
4344	chr20	44047467	44049187	+	0	NA	intron (NR_047692, intron 4 of 10)	intron (NR_047692, intron 4 of 10)	3620	NR_047695	51604	Hs.437388	XM_005260427	ENSG00000124155	PIGT	MCAHS3|NDAP|PNH2	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding
3758	chr12	20151137	20153586	+	0	NA	Intergenic	Intergenic	-15258	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
3545	chr1	171786306	171788029	+	0	NA	Intergenic	Intergenic	-23451	NM_001278252	26052	Hs.654775	XM_005245079	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
500	chr15	30355663	30358346	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18154	NM_001282472	653073	Hs.649690	XM_001724383		GOLGA8J	-	golgin A8 family, member J	protein-coding
1221	chr5	153470709	153472883	+	0	NA	Intergenic	L1MC2|LINE|L1	53277	NM_001135037	4238	Hs.432818	XM_005268450	ENSG00000037749	MFAP3	-	microfibrillar-associated protein 3	protein-coding
1200	chr5	131772477	131774370	+	0	NA	intron (NR_045116, intron 2 of 3)	intron (NR_045116, intron 2 of 3)	26958	NR_045116	441108	Hs.658288	NM_001013717	ENSG00000197536	C5orf56	-	chromosome 5 open reading frame 56	ncRNA
1757	chr1	192872830	192875541	+	0	NA	Intergenic	Intergenic	96016	NM_002923	5997	Hs.78944	NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G-protein signaling 2, 24kDa	protein-coding
4193	chr2	72371255	72373018	+	0	NA	intron (NM_019885, intron 1 of 5)	CpG	2855	NM_001277742	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
918	chr3	14377322	14379387	+	0	NA	Intergenic	L1ME3A|LINE|L1	15714	NR_110135	101927565	Hs.306905	XR_245183	ENSG00000251576	RP11-536I6.1	-	uncharacterized LOC101927565	ncRNA
1413	chr7	84325903	84327970	+	0	NA	Intergenic	MER31-int|LTR|ERV1	165144	NR_110079	101927378	Hs.539042	XR_242309	ENSG00000235139	AC003984.1	-	uncharacterized LOC101927378	ncRNA
4386	chr22	27608082	27609461	+	0	NA	Intergenic	Intergenic	555325	NR_033320	440823	Hs.517502	NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2	myocardial infarction associated transcript (non-protein coding)	ncRNA
2107	chr13	74002142	74004965	+	0	NA	Intergenic	AluSx|SINE|Alu	370623	NM_001730	688	Hs.508234	XM_005266508	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
1275	chr6	15790765	15792685	+	0	NA	Intergenic	PABL_A|LTR|ERV1	-128436	NM_001271669	84062	Hs.571148	XM_005249447	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
2211	chr15	69883143	69889775	+	0	NA	Intergenic	Intergenic	32400	NR_026979	145837	Hs.737088	XR_243079		RP11-279F6.1	-	uncharacterized LOC145837	ncRNA
1598	chrX	107690155	107691540	+	0	NA	intron (NM_033380, intron 1 of 50)	L1M5|LINE|L1	7773	NM_033380	1287	Hs.369089	XM_005262070	ENSG00000188153	COL4A5	ASLN|ATS|CA54	collagen, type IV, alpha 5	protein-coding
4941	chr9	33505693	33508255	+	0	NA	intron (NR_003667, intron 4 of 4)	intron (NR_003667, intron 4 of 4)	4190	NR_003667	441394	Hs.521441	NR_003667		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SUGT1 pseudogene 1	pseudo
3453	chr1	153713571	153716517	+	0	NA	intron (NM_023015, intron 3 of 29)	intron (NM_023015, intron 3 of 29)	14477	NM_023015	65123	Hs.516522	XM_005245459	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A	integrator complex subunit 3	protein-coding
1856	chr10	19926120	19928635	+	0	NA	intron (NM_001142308, intron 36 of 39)	intron (NM_001142308, intron 36 of 39)	-177995	NM_001282736	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
1491	chr8	139650331	139651208	+	0	NA	intron (NM_152888, intron 47 of 64)	intron (NM_152888, intron 47 of 64)	-141704	NM_015912	51059	Hs.126024	XM_005250928	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
1362	chr6	137530917	137533007	+	0	NA	intron (NM_000416, intron 1 of 6)	intron (NM_000416, intron 1 of 6)	8605	NM_000416	3459	Hs.520414	XM_005266958	ENSG00000027697	IFNGR1	CD119|IFNGR	interferon gamma receptor 1	protein-coding
4155	chr2	30475005	30476797	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	21504	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
1804	chr1	234630164	234632597	+	0	NA	Intergenic	Intergenic	-16531	NM_005646	6894	Hs.498115	XM_005273234	ENSG00000059588	TARBP1	TRM3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
632	chr19	41401898	41404648	+	0	NA	intron (NR_040249, intron 2 of 4)	MIR|SINE|MIR	6542	NR_040249	22952	Hs.738699	NR_040249	ENSG00000130612	CYP2G1P	CYP2G1|CYP2G2P|CYP2GP1	cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene	pseudo
2357	chr18	53522258	53524600	+	0	NA	Intergenic	Intergenic	-220241	NM_001243226	6925	Hs.605153	XM_005266738	ENSG00000196628	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
394	chr12	103313398	103315295	+	0	NA	Intergenic	L1ME5|LINE|L1	-2965	NM_000277	5053	Hs.603740	NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
1371	chr6	150466626	150468021	+	0	NA	intron (NM_030949, intron 1 of 3)	MIR|SINE|MIR	3135	NM_030949	81706	Hs.486798	XM_005267152	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1, regulatory (inhibitor) subunit 14C	protein-coding
2484	chr2	72948981	72951979	+	0	NA	intron (NM_015189, intron 5 of 21)	intron (NM_015189, intron 5 of 21)	102697	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
2659	chr21	19060606	19062913	+	0	NA	Intergenic	L1PB1|LINE|L1	-76491	NM_001130914	10950	Hs.473420	NM_001130914	ENSG00000154640	BTG3	ANA|TOB5|TOB55|TOFA	BTG family, member 3	protein-coding
513	chr15	52948472	52950104	+	0	NA	intron (NR_104457, intron 2 of 12)	intron (NR_104457, intron 2 of 12)	-5041	NM_001286495	56204	Hs.152385	XM_005254546	ENSG00000047346	FAM214A	KIAA1370	family with sequence similarity 214, member A	protein-coding
4954	chr9	80202669	80205373	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	59211	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	guanine nucleotide binding protein (G protein), alpha 14	protein-coding
3938	chr15	62402017	62402906	+	0	NA	Intergenic	Intergenic	43285	NM_207322	145741	Hs.202656	NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
50	chr1	68180963	68184119	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	31681	NM_001924	1647	Hs.80409	NM_001199741	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
2645	chr20	45766993	45769966	+	0	NA	intron (NM_172110, intron 9 of 13)	HAL1|LINE|L1	-27130	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
1519	chr9	27124421	27126281	+	0	NA	intron (NM_000459, intron 1 of 22)	intron (NM_000459, intron 1 of 22)	16204	NM_000459	7010	Hs.89640	XM_005251561	ENSG00000120156	TEK	CD202B|TIE-2|TIE2|VMCM|VMCM1	TEK tyrosine kinase, endothelial	protein-coding
2633	chr20	23735264	23737809	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-4962	NM_001898	1469	Hs.123114	NM_001898	ENSG00000170373	CST1	-	cystatin SN	protein-coding
3173	chr6	127132350	127134730	+	0	NA	Intergenic	Intergenic	-306508	NM_032784	84870	Hs.135254	XM_005267167		RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
797	chr2	223846796	223847773	+	0	NA	Intergenic	Intergenic	-69364	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel, Isk-related family, member 4	protein-coding
2459	chr2	42147362	42151673	+	0	NA	Intergenic	Intergenic	11346	NR_110263	101929723	Hs.369330	XR_244994		AC104654.2	-	uncharacterized LOC101929723	ncRNA
2197	chr15	56330635	56335571	+	0	NA	Intergenic	MIR|SINE|MIR	-47159	NM_006154	4734	Hs.1565	XM_005254406	ENSG00000069869	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
3543	chr1	169029030	169030178	+	0	NA	intron (NR_104091, intron 2 of 4)	intron (NR_104091, intron 2 of 4)	26639	NR_104091	101978719	Hs.517849	NR_104091		LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
4318	chr20	11367344	11369072	+	0	NA	Intergenic	AluSz|SINE|Alu	-114177	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
1236	chr6	6683155	6684990	+	0	NA	Intergenic	Intergenic	-61013	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS|RP3-398D13.3	LY86 antisense RNA 1	ncRNA
2413	chr2	100905875	100910731	+	0	NA	intron (NM_198461, intron 9 of 11)	intron (NM_198461, intron 9 of 11)	30892	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
645	chr19	39028653	39031083	+	0	NA	intron (NM_001042723, intron 83 of 104)	intron (NM_001042723, intron 83 of 104)	78807	NM_007181	11184	Hs.95424	NM_001042600	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
4400	chr3	46970697	46979200	+	0	NA	intron (NM_001277074, intron 2 of 6)	intron (NM_001277074, intron 2 of 6)	43043	NR_102269	151903	Hs.745081	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
2566	chr2	234464046	234469725	+	0	NA	intron (NM_018218, intron 3 of 30)	intron (NM_018218, intron 3 of 30)	7351	NM_018218	55230	Hs.96513	XM_005246088	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
1176	chr5	93552914	93554918	+	0	NA	intron (NM_001145678, intron 20 of 20)	L2b|LINE|L2	-106512	NM_001163418	83989	Hs.600086	XM_005272103	ENSG00000113391	FAM172A	C5orf21	family with sequence similarity 172, member A	protein-coding
5015	chrX	106974860	106975898	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-15088	NM_004089	1831	Hs.522074	XM_005262098	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
2881	chr4	84775371	84777621	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	319026	NM_032717	84803	Hs.99196	XM_005263314	ENSG00000138678	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
1039	chr4	23904993	23906382	+	0	NA	Intergenic	Intergenic	-13987	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
1815	chr10	5305834	5308663	+	0	NA	Intergenic	MER4-int|LTR|ERV1	68450	NM_001818	1109	Hs.567245	NM_001818	ENSG00000198610	AKR1C4	3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA	aldo-keto reductase family 1, member C4	protein-coding
3662	chr10	47161261	47164258	+	0	NA	intron (NM_001040084, intron 9 of 11).2	intron (NM_001040084, intron 9 of 11).2	-11359	NR_033957	643650	Hs.744313	NR_033957	ENSG00000223477	LINC00842	RP11-314P12.2	long intergenic non-protein coding RNA 842	ncRNA
1005	chr4	41417177	41422396	+	0	NA	intron (NM_014988, intron 1 of 26)	AluJb|SINE|Alu	56984	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4723	chr6	3798335	3798923	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-46383	NM_183373	221749	Hs.484500	XM_005248938	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
4280	chr20	31325130	31326394	+	0	NA	intron (NM_053041, intron 1 of 8)	intron (NM_053041, intron 1 of 8)	6052	NM_001099339	149951	Hs.408427	XM_005260299	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
28	chr1	13622098	13624730	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	-11881	NM_001012276	391002		NM_001012276	ENSG00000182330	PRAMEF8	-	PRAME family member 8	protein-coding
4130	chr2	85671455	85673948	+	0	NA	Intergenic	AluJr|SINE|Alu	10783	NM_198482	284948	Hs.209542	XM_005264269	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
2089	chr13	80297291	80300798	+	0	NA	Intergenic	Intergenic	-243678	NR_046685	100874208	Hs.602801	NR_046685	ENSG00000232132	NDFIP2-AS1	RP11-394M3.2	NDFIP2 antisense RNA 1	ncRNA
2087	chr13	48281571	48284497	+	0	NA	Intergenic	LTR78B|LTR|ERV1	292428	NM_003850	8803	Hs.743361	XM_005266579	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
3474	chr1	7608501	7611246	+	0	NA	intron (NM_015215, intron 6 of 22)	L2a|LINE|L2	-221456	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
4575	chr4	141663104	141664508	+	0	NA	intron (NM_015130, intron 1 of 20)	intron (NM_015130, intron 1 of 20)	13665	NM_015130	23158	Hs.595450	NM_015130	ENSG00000109436	TBC1D9	MDR1	TBC1 domain family, member 9 (with GRAM domain)	protein-coding
215	chr10	114163871	114165508	+	0	NA	intron (NM_016234, intron 5 of 20)	intron (NM_016234, intron 5 of 20)	28733	NM_016234	51703	Hs.11638	XM_005269897	ENSG00000197142	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long-chain family member 5	protein-coding
4410	chr3	7546577	7547881	+	0	NA	intron (NM_000844, intron 7 of 9)	MSTD-int|LTR|ERVL-MaLR	510765	NR_110131	101927394	Hs.517767	XR_245179	ENSG00000227110	AC087859.1	-	uncharacterized LOC101927394	ncRNA
3320	chr9	117438894	117441417	+	0	NA	intron (NM_001199233, intron 1 of 4)	intron (NM_001199233, intron 1 of 4)	4214	NM_001199233	100505478	Hs.200101	NM_001199233		RP11-402G3.3	-	uncharacterized LOC100505478	protein-coding
687	chr2	18360850	18362676	+	0	NA	Intergenic	Intergenic	301839	NM_002252	3790	Hs.414489	XM_005262614	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
2184	chr15	33154571	33160621	+	0	NA	intron (NM_001277313, intron 16 of 20)	intron (NM_001277313, intron 16 of 20)	-146530	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
3161	chr6	112542313	112546109	+	0	NA	intron (NM_001105207, intron 2 of 38)	intron (NM_001105207, intron 2 of 38)	31706	NM_001105206	3910	Hs.654572	XM_005266983	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin, alpha 4	protein-coding
2298	chr17	39946994	39951911	+	0	NA	Intergenic	Intergenic	-6488	NM_021991	3728	Hs.514174	XM_005257313	ENSG00000173801	JUP	ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB	junction plakoglobin	protein-coding
2336	chr18	21039584	21042284	+	0	NA	intron (NM_003831, intron 1 of 12)	LTR86C|LTR|ERVL	8147	NM_003831	8780	Hs.728452	XM_005258374	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
4424	chr3	39221736	39223114	+	0	NA	Intergenic	CpG	11652	NM_194293	165904	Hs.737550	XM_005264909	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin-binding repeat containing 1	protein-coding
2190	chr15	44393904	44396153	+	0	NA	intron (NM_001286490, intron 1 of 15)	intron (NM_001286490, intron 1 of 15)	91616	NM_001286490	84978	Hs.578544	XM_005254729	ENSG00000171877	FRMD5	-	FERM domain containing 5	protein-coding
826	chr20	6763787	6765966	+	0	NA	Intergenic	Intergenic	16131	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
3990	chr16	57286570	57287500	+	0	NA	3' UTR (NM_012106, exon 6 of 6)	3' UTR (NM_012106, exon 6 of 6)	7997	NM_012106	23568	Hs.719024	XM_005255881	ENSG00000102931	ARL2BP	BART|BART1	ADP-ribosylation factor-like 2 binding protein	protein-coding
2494	chr2	87551368	87553621	+	0	NA	Intergenic	Intergenic	-202480	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	AC133644.1|C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
1344	chr6	125541588	125546058	+	0	NA	intron (NM_001003397, intron 2 of 4)	LTR24C|LTR|ERV1	68403	NM_001003395	7164	Hs.591347	XM_005267120	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
3840	chr12	122528504	122529592	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	12396	NM_014938	22877	Hs.731847	NM_014938		MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
3338	chr9	139749185	139756265	+	0	NA	exon (NM_206920, exon 21 of 27)	exon (NM_206920, exon 21 of 27)	5906	NM_206920	158056	Hs.376780	NM_206920	ENSG00000177943	MAMDC4	AEGP	MAM domain containing 4	protein-coding
2329	chr18	11117915	11122657	+	0	NA	intron (NM_022068, intron 1 of 51)	intron (NM_022068, intron 1 of 51)	28475	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
4437	chr3	64329989	64331042	+	0	NA	Intergenic	Intergenic	-119384	NM_198859	166336	Hs.148105	XM_005264910	ENSG00000163637	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
2980	chr5	67751540	67753776	+	0	NA	Intergenic	Intergenic	164262	NM_001242466	5295	Hs.734132	XM_005248542	ENSG00000145675	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
2653	chr21	39713435	39717550	+	0	NA	Intergenic	Intergenic	71150	NM_170737	3772	Hs.411299	XM_005260975	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
2548	chr2	205811400	205813745	+	0	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	402056	NM_057177	117583	Hs.657382	XM_005246273	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
620	chr18	48140912	48142219	+	0	NA	intron (NM_002747, intron 1 of 5)	Zaphod|DNA|hAT-Tip100	55081	NM_002747	5596	Hs.433728	XM_005258298	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
4194	chr2	72375250	72376691	+	0	NA	promoter-TSS (NM_001277742)	promoter-TSS (NM_001277742)	-979	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
2625	chr20	18204709	18208003	+	0	NA	Intergenic	Intergenic	-62571	NM_001282996	7692	Hs.472221	XM_005260813	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
4090	chr18	47833718	47834958	+	0	NA	Intergenic	Intergenic	-19646	NM_014593	30827	Hs.180933	NM_001101654	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
3400	chrX	17430281	17433993	+	0	NA	intron (NM_198270, intron 1 of 7)	intron (NM_198270, intron 1 of 7)	-11867	NR_039925	100616249		NR_039925		MIR4768	-	microRNA 4768	ncRNA
937	chr3	31981628	31984171	+	0	NA	intron (NM_017784, intron 1 of 11)	intron (NM_017784, intron 1 of 11)	-40367	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
3266	chr7	106088458	106090796	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-163989	NM_005746	10135	Hs.489615	XM_005250100	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
730	chr2	72806175	72808520	+	0	NA	intron (NM_015189, intron 6 of 21)	AluSz|SINE|Alu	245830	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
16	chr1	223574968	223576897	+	0	NA	Intergenic	Intergenic	9217	NM_152610	164127	Hs.192090	NM_152610	ENSG00000178395	C1orf65	RP11-76K24.1	chromosome 1 open reading frame 65	protein-coding
921	chr3	15320273	15323580	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	26235	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	AC087590.3	SH3BP5 antisense RNA 1	ncRNA
3833	chr12	106499567	106503579	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	32238	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
2880	chr4	84771432	84774863	+	0	NA	Intergenic	Intergenic	315677	NM_032717	84803	Hs.99196	XM_005263314	ENSG00000138678	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
2311	chr17	68682711	68684756	+	0	NA	Intergenic	Intergenic	514587	NR_104152	101928165	Hs.407613	XR_243749	ENSG00000260785	CASC17	LINC00600|RP11-879D6.1	cancer susceptibility candidate 17 (non-protein coding)	ncRNA
3631	chr10	73726562	73732186	+	0	NA	intron (NM_004273, intron 1 of 2)	intron (NM_004273, intron 1 of 2)	5254	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
5002	chrX	35456752	35459554	+	0	NA	Intergenic	MER4E|LTR|ERV1	-358306	NM_001099921	139604	Hs.700562	NM_001099921	ENSG00000189023	MAGEB16	-	melanoma antigen family B, 16	protein-coding
2556	chr2	218193761	218199255	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	424808	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
994	chr3	189654113	189656307	+	0	NA	Intergenic	L2c|LINE|L2	107499	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
1786	chr1	218337129	218339551	+	0	NA	Intergenic	CpG	-120289	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	KIAA0507	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding
2320	chr18	33928512	33932013	+	0	NA	intron (NM_001281740, intron 1 of 28)	intron (NM_001281740, intron 1 of 28)	52603	NM_001281739	80206	Hs.630884	XM_005258345	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
2788	chr3	111586380	111590002	+	0	NA	intron (NM_001134439, intron 1 of 17)	intron (NM_001134439, intron 1 of 17)	9623	NM_001134439	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
2440	chr2	25839785	25843460	+	0	NA	intron (NM_001256303, intron 4 of 19)	intron (NM_001256303, intron 4 of 19)	31469	NM_001256308	1838	Hs.307720	XM_005264181	ENSG00000138101	DTNB	-	dystrobrevin, beta	protein-coding
2140	chr14	51770736	51772837	+	0	NA	Intergenic	Intergenic	-28325	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	RP11-255G12.1	long intergenic non-protein coding RNA 640	ncRNA
1523	chr9	72085011	72087453	+	0	NA	intron (NM_001163, intron 4 of 12)	intron (NM_001163, intron 4 of 12)	141991	NM_004816	9413	Hs.118003	XM_005252307	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	family with sequence similarity 189, member A2	protein-coding
4667	chr5	133076857	133080038	+	0	NA	Intergenic	Intergenic	-130224	NM_015082	23105	Hs.483390	NM_015082	ENSG00000053108	FSTL4	-	follistatin-like 4	protein-coding
3578	chr1	204052880	204054217	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	11302	NM_005686	9580	Hs.201671	XM_005245623	ENSG00000143842	SOX13	ICA12|Sox-13	SRY (sex determining region Y)-box 13	protein-coding
93	chr1	168658402	168660389	+	0	NA	Intergenic	Intergenic	39047	NM_001937	1805	Hs.80552	NM_001937	ENSG00000143196	DPT	TRAMP	dermatopontin	protein-coding
3055	chr6	36643184	36654735	+	0	NA	intron (NM_001220778, intron 1 of 2)	MER5B|DNA|hAT-Charlie	2472	NM_001220778	1026	Hs.732576	XM_005248787	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin-dependent kinase inhibitor 1A (p21, Cip1)	protein-coding
3040	chr5	173170341	173174153	+	0	NA	intron (NR_108027, intron 1 of 2)	intron (NR_108027, intron 1 of 2)	965	NR_108027	101928136	Hs.638681	XR_245298		LOC101928136	-	uncharacterized LOC101928136	ncRNA
2429	chr2	1596421	1598728	+	0	NA	Intergenic	Intergenic	150717	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
374	chr12	77795024	77797403	+	0	NA	Intergenic	Intergenic	-336853	NM_203394	144455	Hs.416375	NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
2790	chr3	112369205	112376427	+	0	NA	Intergenic	Intergenic	-12826	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
3876	chr14	70462813	70470112	+	0	NA	intron (NM_001034852, intron 7 of 11)	intron (NM_001034852, intron 7 of 11)	80472	NM_182936	6547	Hs.337696	XM_005268017	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
429	chr13	49402666	49404011	+	0	NA	Intergenic	Intergenic	122387	NM_020377	57105	Hs.614318	XM_005266475	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
1306	chr6	51951713	51953356	+	0	NA	promoter-TSS (NM_138694)	promoter-TSS (NM_138694)	-111	NM_138694	5314	Hs.662050	NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
4576	chr4	143010748	143014760	+	0	NA	intron (NM_001101669, intron 23 of 25)	intron (NM_001101669, intron 23 of 25)	455005	NM_000585	3600	Hs.602618	NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
3688	chr10	93362931	93366069	+	0	NA	intron (NR_024467, intron 1 of 4)	intron (NR_024467, intron 1 of 4)	6717	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
3767	chr12	130563462	130564933	+	0	NA	Intergenic	Intergenic	-37310	NR_024457	100190940	Hs.625993	XR_242944	ENSG00000214039	RP11-474D1.3	-	uncharacterized LOC100190940	ncRNA
3097	chr6	11296681	11298581	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-64716	NM_001271033	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
1328	chr6	105875642	105877989	+	0	NA	Intergenic	Intergenic	-25816	NM_002726	5550	Hs.436564	XM_005267044	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
4049	chr17	60901984	60902796	+	0	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-16648	NM_152598	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
409	chr13	23078886	23080981	+	0	NA	Intergenic	Intergenic	295509	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
1091	chr4	104345499	104347155	+	0	NA	Intergenic	Intergenic	-226761	NM_001286734	1062	Hs.75573	XM_005262699	ENSG00000138778	CENPE	CENP-E|KIF10|PPP1R61	centromere protein E, 312kDa	protein-coding
4594	chr5	58589148	58590649	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-17953	NM_001197220	5144	Hs.117545	XM_005248537	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
812	chr20	2113456	2116266	+	0	NA	intron (NM_080836, intron 3 of 3)	AluSx|SINE|Alu	32333	NM_080836	140901	Hs.100057	NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
1958	chr11	73975023	73985323	+	0	NA	intron (NR_110031, intron 10 of 11)	intron (NR_110031, intron 10 of 11)	42548	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
1962	chr11	76782692	76786918	+	0	NA	intron (NM_004055, intron 1 of 12)	L2|LINE|L2	6813	NM_004055	726	Hs.248153	XM_005274206	ENSG00000149260	CAPN5	HTRA3|nCL-3	calpain 5	protein-coding
489	chr14	100647631	100649807	+	0	NA	Intergenic	Intergenic	-22707	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
585	chr17	45663891	45667007	+	0	NA	intron (NM_006310, intron 9 of 22)	intron (NM_006310, intron 9 of 22)	57005	NM_006310	9520	Hs.443837	XM_005257839	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
3711	chr11	92027947	92029612	+	0	NA	Intergenic	Intergenic	-56483	NM_001008781	120114	Hs.98523	XM_005273759	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
1392	chr7	24505121	24507408	+	0	NA	Intergenic	L2a|LINE|L2	-106821	NM_016447	51678	Hs.594275	XM_005249774	ENSG00000105926	MPP6	PALS2|VAM-1|VAM1|p55T	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
4633	chr5	81930623	81932256	+	0	NA	Intergenic	Intergenic	-204535	NR_039773	100616297		NR_039773		MIR3977	-	microRNA 3977	ncRNA
1080	chr4	74721690	74723286	+	0	NA	Intergenic	Intergenic	3475	NM_002620	5197	Hs.72933	NM_002620		PF4V1	CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1	platelet factor 4 variant 1	protein-coding
4724	chr6	3803549	3804623	+	0	NA	Intergenic	Intergenic	-45546	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
2819	chr3	182983056	182985032	+	0	NA	intron (NM_032047, intron 1 of 1)	intron (NM_032047, intron 1 of 1)	13012	NM_032047	84002	Hs.718506	XM_005247823	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
732	chr2	72992131	72993617	+	0	NA	intron (NM_015189, intron 1 of 21)	L1MEg|LINE|L1	60303	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
4653	chr5	113484026	113484684	+	0	NA	Intergenic	HERVK11D-int|LTR|ERVK	-213661	NM_021614	3781	Hs.98280	NM_001278204	ENSG00000080709	KCNN2	KCa2.2|SK2|SKCA2|SKCa 2|hSK2	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
2233	chr15	98503709	98505328	+	0	NA	intron (NM_183376, intron 1 of 7)	CpG	585	NM_183376	91947	Hs.6093	NM_183376	ENSG00000140450	ARRDC4	-	arrestin domain containing 4	protein-coding
622	chr18	52678629	52680560	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-52855	NM_025214	80323	Hs.120790	XM_005266771	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
970	chr3	120156275	120160163	+	0	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	11699	NM_007085	11167	Hs.269512	XM_005247083		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
2381	chr19	42991763	42994644	+	0	NA	intron (NR_073180, intron 2 of 2)	MER41-int|LTR|ERV1	39458	NM_001712	634	Hs.512682	NM_001024912	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	protein-coding
2771	chr3	99012406	99014447	+	0	NA	Intergenic	L1MCa|LINE|L1	-344014	NM_020351	1295	Hs.740617	XM_005247098	ENSG00000144810	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
1416	chr7	92545584	92547042	+	0	NA	non-coding (NR_110088, exon 2 of 2)	non-coding (NR_110088, exon 2 of 2)	-80372	NM_001145306	1021	Hs.119882	XM_005250106	ENSG00000105810	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
2256	chr16	67949395	67954576	+	0	NA	intron (NM_006742, intron 2 of 2)	L3|LINE|CR1	13793	NM_001907	1506	Hs.654546	NM_001907		CTRL	CTRL1	chymotrypsin-like	protein-coding
1658	chr1	201653891	201657690	+	0	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	-32846	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
2057	chr12	58286797	58288819	+	0	NA	Intergenic	Intergenic	42139	NR_038269	100506844	Hs.90286	NR_038269		RP11-620J15.3	-	uncharacterized LOC100506844	ncRNA
1237	chr6	71957544	71961041	+	0	NA	Intergenic	Intergenic	-39185	NM_024576	79627	Hs.656091	XM_005248765		OGFRL1	dJ331H24.1	opioid growth factor receptor-like 1	protein-coding
1635	chr1	95400849	95404485	+	0	NA	intron (NR_033998, intron 2 of 3)	intron (NR_033998, intron 2 of 3)	9083	NR_033998	729970	Hs.297988	NR_033998	ENSG00000235501	RP4-639F20.1	-	hCG2028352-like	ncRNA
2361	chr18	61343180	61352576	+	0	NA	Intergenic	Intergenic	-18681	NM_006919	6317	Hs.227948	XM_005266736	ENSG00000057149	SERPINB3	HsT1196|SCC|SCCA-1|SCCA-PD|SCCA1|T4-A	serpin peptidase inhibitor, clade B (ovalbumin), member 3	protein-coding
2490	chr2	76417000	76422404	+	0	NA	Intergenic	Intergenic	-481591	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
2563	chr2	228625923	228628039	+	0	NA	Intergenic	Intergenic	-44236	NM_025243	80704	Hs.221597	XM_005246871	ENSG00000135917	SLC19A3	BBGD|THMD2|THTR2	solute carrier family 19 (thiamine transporter), member 3	protein-coding
3086	chr6	4007008	4008993	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13569	NM_003913	8899	Hs.159014	XR_241928	ENSG00000112739	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	pre-mRNA processing factor 4B	protein-coding
5000	chrX	69744768	69746863	+	0	NA	Intergenic	Intergenic	-69971	NR_109801	100873930	Hs.571699	XR_244507		DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
4749	chr6	21885490	21888586	+	0	NA	intron (NR_015410, intron 4 of 11)	intron (NR_015410, intron 4 of 11)	220363	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4333	chr20	23028773	23032027	+	0	NA	promoter-TSS (NM_000361)	promoter-TSS (NM_000361)	-99	NM_000361	7056	Hs.2030	NM_000361	ENSG00000178726	THBD	AHUS6|BDCA3|CD141|THPH12|THRM|TM	thrombomodulin	protein-coding
4929	chr9	78986656	78991578	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	20327	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
3991	chr16	57643255	57646190	+	0	NA	Intergenic	Intergenic	-9188	NM_005682	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
4461	chr3	109070648	109071608	+	0	NA	Intergenic	Intergenic	-14709	NM_018189	55211	Hs.317659	XM_005247576	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
270	chr11	73964986	73970715	+	0	NA	Intergenic	Intergenic	54871	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
2840	chr4	66530872	66538668	+	0	NA	promoter-TSS (NR_034138)	promoter-TSS (NR_034138)	-909	NR_034138	100144602	Hs.201854	NR_034138	ENSG00000250846	RP11-807H7.1	-	uncharacterized LOC100144602	ncRNA
1602	chrX	130961627	130963510	+	0	NA	intron (NR_026975, intron 1 of 12)	intron (NR_026975, intron 1 of 12)	2103	NR_026975	286467	Hs.720385	NR_026975	ENSG00000213468	RP11-453F18__B.1	-	uncharacterized LOC286467	ncRNA
4226	chr2	134192406	134193043	+	0	NA	intron (NR_107007, intron 1 of 6)	intron (NR_107007, intron 1 of 6)	3488	NR_107007	102466866		NR_107007		MIR7853	hsa-mir-7853	microRNA mir-7853	ncRNA
2007	chr12	80837335	80840503	+	0	NA	intron (NM_001145026, intron 2 of 41)	intron (NM_001145026, intron 2 of 41)	793	NM_001145026	374462	Hs.539284	NM_001145026		PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type, Q	protein-coding
1332	chr6	113000967	113002748	+	0	NA	Intergenic	Intergenic	333325	NM_001013734	442247	Hs.448264	NM_001013734	ENSG00000251258	RFPL4B	RNF211|RP11-506B6.6	ret finger protein-like 4B	protein-coding
1399	chr7	29661798	29663178	+	0	NA	Intergenic	Intergenic	57956	NR_039600	100616354		NR_039600	ENSG00000212024	MIR550A3	-	microRNA 550a-3	ncRNA
740	chr2	79950193	79952121	+	0	NA	intron (NM_001282598, intron 2 of 17)	intron (NM_001282598, intron 2 of 17)	-74672	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	ncRNA
1117	chr4	173960814	173962302	+	0	NA	TTS (NM_001034845)	TTS (NM_001034845)	-128346	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
103	chr1	183536377	183539176	+	0	NA	intron (NM_001127651, intron 8 of 15)	intron (NM_001127651, intron 8 of 15)	21963	NM_001190794	4688	Hs.587558	XM_005245207	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
3434	chrX	130963553	130965957	+	0	NA	promoter-TSS (NR_026975)	promoter-TSS (NR_026975)	-84	NR_026975	286467	Hs.720385	NR_026975	ENSG00000213468	RP11-453F18__B.1	-	uncharacterized LOC286467	ncRNA
871	chr21	9834583	9838887	+	0	NA	Intergenic	Intergenic	10532	NR_037458	100500815		NR_037458	ENSG00000264063	MIR3687	-	microRNA 3687	ncRNA
3393	chr9	130855250	130858101	+	0	NA	intron (NM_001006642, intron 1 of 9)	intron (NM_001006642, intron 1 of 9)	2932	NM_001006642	114789	Hs.729700	XM_005251688	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	protein-coding
4528	chr4	6948721	6950324	+	0	NA	intron (NM_001113361, intron 2 of 13)	intron (NM_001113361, intron 2 of 13)	38027	NM_020773	57533	Hs.518611	XM_005247985	ENSG00000132405	TBC1D14	-	TBC1 domain family, member 14	protein-coding
2039	chr12	20540757	20544288	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	20343	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
4891	chr7	134843994	134846354	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	9052	NM_001243753	78996	Hs.744954	XM_005250576	ENSG00000122783	C7orf49	MRI	chromosome 7 open reading frame 49	protein-coding
3826	chr12	93516081	93516779	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	-193323	NM_003566	8411	Hs.567367	NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
4042	chr17	48995953	48998926	+	0	NA	Intergenic	Intergenic	-52100	NM_001243877	10140	Hs.744946	NM_001243877	ENSG00000141232	TOB1	APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
3363	chr9	86086253	86090086	+	0	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	-5512	NM_001244960	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
1219	chr5	152930684	152932488	+	0	NA	intron (NM_001258020, intron 3 of 16)	intron (NM_001258020, intron 3 of 16)	59854	NM_001258022	2890	Hs.737709	NM_000827	ENSG00000155511	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
3774	chr12	12952803	12954381	+	0	NA	Intergenic	L2a|LINE|L2	-12688	NM_016355	51202	Hs.719938	NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding
2534	chr2	161438539	161441141	+	0	NA	Intergenic	Intergenic	-89522	NM_002897	5937	Hs.708357	XM_005246737	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
1704	chr1	68175928	68180829	+	0	NA	intron (NM_018841, intron 2 of 3)	AluJb|SINE|Alu	27518	NM_001924	1647	Hs.80409	NM_001199741	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
750	chr2	99095666	99096910	+	0	NA	intron (NM_004027, intron 1 of 25)	intron (NM_004027, intron 1 of 25)	34967	NM_001134224	3631	Hs.469386	XM_005263935	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase, type I, 107kDa	protein-coding
688	chr2	19010221	19011707	+	0	NA	Intergenic	Intergenic	-240118	NM_001199088	93034	Hs.744358	XM_005262631	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	5'-nucleotidase, cytosolic IB	protein-coding
1749	chr1	182556652	182559278	+	0	NA	intron (NM_021133, intron 1 of 6)	intron (NM_021133, intron 1 of 6)	429	NM_021133	6041	Hs.518545	XM_005245411	ENSG00000135828	RNASEL	PRCA1|RNS4	ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	protein-coding
1126	chr5	111570110	111576396	+	0	NA	intron (NM_022140, intron 11 of 22)	intron (NM_022140, intron 11 of 22)	76071	NR_002922	654322	Hs.689709	NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
2128	chr14	100871494	100877193	+	0	NA	intron (NM_001161476, intron 2 of 6)	intron (NM_001161476, intron 2 of 6)	31510	NM_024515	79446	Hs.497600	XM_005268056	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
3926	chr15	33146686	33149073	+	0	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-136813	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
1534	chr9	87583781	87586355	+	0	NA	intron (NM_001018064, intron 18 of 19)	AluSx1|SINE|Alu	300442	NM_001007097	4915	Hs.712776	XM_005252001	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
2570	chr2	237653122	237656029	+	0	NA	Intergenic	Intergenic	176195	NM_020311	57007	Hs.471751	XM_005246097	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
1915	chr10	122998784	123001093	+	0	NA	Intergenic	Intergenic	353543	NM_023029	2263	Hs.533683	NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
3729	chr11	35296453	35298154	+	0	NA	intron (NM_004171, intron 9 of 10)	intron (NM_004171, intron 9 of 10)	136886	NM_001202556	960	Hs.502328	XM_005253231	ENSG00000026508	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
4523	chr4	176339609	176342204	+	0	NA	Intergenic	Intergenic	367921	NM_001261448	2823	Hs.75819	NM_001261447	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
2737	chr3	25479262	25482330	+	0	NA	intron (NM_000965, intron 1 of 7)	intron (NM_000965, intron 1 of 7)	10962	NM_000965	5915	Hs.733004	XM_005265361	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RRB2	retinoic acid receptor, beta	protein-coding
804	chr2	234621957	234624508	+	0	NA	intron (NM_019078, intron 1 of 4)	MER33|DNA|hAT-Charlie	1594	NM_019078	54579	Hs.554822	NM_019078	ENSG00000240224	UGT1A5	UDPGT|UDPGT 1-5|UGT1E	UDP glucuronosyltransferase 1 family, polypeptide A5	protein-coding
83	chr1	151802462	151811076	+	0	NA	Intergenic	Intergenic	-2421	NM_005060	6097	Hs.607993	XM_005245423	ENSG00000143365	RORC	NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR-related orphan receptor C	protein-coding
3375	chr9	107824390	107828882	+	0	NA	Intergenic	Intergenic	-136109	NM_005502	19	Hs.659274	XM_005251773	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
4503	chr3	159942703	159944535	+	0	NA	exon (NM_001168214, exon 1 of 1)	exon (NM_001168214, exon 1 of 1)	196	NM_001168214	401097	Hs.729755	NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
1385	chr7	134463376	134466269	+	0	NA	intron (NM_033138, intron 1 of 14)	intron (NM_033138, intron 1 of 14)	658	NM_033157	800	Hs.490203	XM_005250609	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
2672	chr21	40329680	40332551	+	0	NA	Intergenic	Intergenic	18585	NR_109962	101928435	Hs.385528	XR_244312	ENSG00000232837	AF064858.7	-	uncharacterized LOC101928435	ncRNA
4156	chr2	30495119	30498920	+	0	NA	Intergenic	AluY|SINE|Alu	42622	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
1818	chr10	17104332	17106469	+	0	NA	intron (NM_001081, intron 22 of 66)	intron (NM_001081, intron 22 of 66)	66416	NM_001081	8029	Hs.166206	NM_001081	ENSG00000107611	CUBN	IFCR|MGA1|gp280	cubilin (intrinsic factor-cobalamin receptor)	protein-coding
2094	chr13	22243375	22245767	+	0	NA	promoter-TSS (NM_002010)	promoter-TSS (NM_002010)	-644	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
962	chr3	111627202	111633277	+	0	NA	intron (NM_145753, intron 2 of 16)	intron (NM_145753, intron 2 of 16)	51671	NM_001134439	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
1837	chr10	91060291	91063883	+	0	NA	intron (NM_001547, intron 1 of 1)	intron (NM_001547, intron 1 of 1)	381	NM_001547	3433	Hs.437609	NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon-induced protein with tetratricopeptide repeats 2	protein-coding
3778	chr12	15815944	15816607	+	0	NA	intron (NM_004447, intron 8 of 20)	intron (NM_004447, intron 8 of 20)	116997	NM_030668	5800	Hs.160871	NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
143	chr1	248607760	248610788	+	0	NA	Intergenic	Intergenic	-6825	NM_001004136	401992	Hs.554482	NM_001004136	ENSG00000196240	OR2T2	OR1-43|OR2T2P	olfactory receptor, family 2, subfamily T, member 2	protein-coding
3090	chr6	7112356	7114922	+	0	NA	intron (NM_001003700, intron 1 of 11)	intron (NM_001003700, intron 1 of 11)	5553	NM_001003699	6239	Hs.298248	XM_005249272	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
4020	chr17	62158710	62162855	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	46720	NM_001433	2081	Hs.744953	XM_005257141	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
2323	chr18	48085846	48087767	+	0	NA	intron (NM_002747, intron 1 of 5)	CpG	322	NM_002747	5596	Hs.433728	XM_005258298	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
3049	chr6	13300910	13309658	+	0	NA	TTS (NM_016495)	TTS (NM_016495)	-9466	NM_001242698	100130357	Hs.657498	XM_005248776		RP1-257A7.4	-	uncharacterized LOC100130357	protein-coding
2822	chr3	193560851	193562994	+	0	NA	Intergenic	Intergenic	150105	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
1051	chr4	41453070	41455249	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	91357	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
3033	chr5	156714948	156720015	+	0	NA	intron (NM_001037332, intron 3 of 30)	MLT1D|LTR|ERVL-MaLR	21119	NM_014376	26999	Hs.519702	XM_005265883	ENSG00000055163	CYFIP2	PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
518	chr15	69919622	69921410	+	0	NA	Intergenic	Intergenic	66457	NR_026979	145837	Hs.737088	XR_243079		RP11-279F6.1	-	uncharacterized LOC145837	ncRNA
4802	chr6	125334773	125336340	+	0	NA	intron (NM_152553, intron 3 of 8)	intron (NM_152553, intron 3 of 8)	31046	NR_104440	154214	Hs.656715	XM_005266832	ENSG00000146373	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
2914	chr4	158953697	158955691	+	0	NA	Intergenic	L2|LINE|L2	139024	NM_016613	51313	Hs.567498	XM_005263054	ENSG00000164125	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
2906	chr4	143765744	143768783	+	0	NA	intron (NM_001101669, intron 1 of 25)	CpG	341	NM_003866	8821	Hs.531403	XM_005263322	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
1211	chr5	144843330	144845884	+	0	NA	Intergenic	Intergenic	370325	NM_138492	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
3221	chr7	158803556	158810903	+	0	NA	intron (NR_024394, intron 1 of 4)	intron (NR_024394, intron 1 of 4)	6184	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
2852	chr4	173895440	173907869	+	0	NA	intron (NM_001034845, intron 10 of 12)	MLT1B|LTR|ERVL-MaLR	-188250	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
2732	chr3	7545969	7549901	+	0	NA	intron (NM_000844, intron 7 of 9)	MSTD-int|LTR|ERVL-MaLR	510059	NR_110131	101927394	Hs.517767	XR_245179	ENSG00000227110	AC087859.1	-	uncharacterized LOC101927394	ncRNA
2155	chr14	92209326	92212679	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-12589	NM_024764	79820	Hs.131755	XM_005268066	ENSG00000133962	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
2991	chr5	95142481	95149677	+	0	NA	Intergenic	AluSx3|SINE|Alu	12498	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
2399	chr2	234347479	234363021	+	0	NA	intron (NM_003648, intron 10 of 28)	intron (NM_003648, intron 10 of 28)	58450	NM_003648	8527	Hs.471675	XM_005246107	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
1542	chr9	110499591	110502498	+	0	NA	Intergenic	MIRb|SINE|MIR	-248997	NM_004235	9314	Hs.376206	XM_005252305	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
1711	chr1	94427908	94431888	+	0	NA	Intergenic	MIRb|SINE|MIR	-54886	NM_002061	2730	Hs.315562	XM_005270754		GCLM	GLCLR	glutamate-cysteine ligase, modifier subunit	protein-coding
4780	chr6	52415866	52417092	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	25383	NM_012288	9697	Hs.520182	NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
2836	chr4	41390929	41403411	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	34368	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2102	chr13	45427529	45429774	+	0	NA	Intergenic	Intergenic	-44885	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330|RP11-96M12.1	long intergenic non-protein coding RNA 330	ncRNA
3720	chr11	19999372	20001278	+	0	NA	intron (NM_001244963, intron 11 of 39)	intron (NM_001244963, intron 11 of 39)	-43777	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
478	chr14	79979801	79983013	+	0	NA	intron (NM_001272020, intron 2 of 5)	MIRb|SINE|MIR	235725	NR_073546	9369	Hs.368307	XM_005268218		NRXN3	C14orf60	neurexin 3	protein-coding
3242	chr7	40054556	40056928	+	0	NA	intron (NM_031267, intron 5 of 13)	intron (NM_031267, intron 5 of 13)	65783	NM_003718	8621	Hs.233552	NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHED|hCDK13	cyclin-dependent kinase 13	protein-coding
384	chr12	92079051	92082617	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	454655	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	C12orf79	-	chromosome 12 open reading frame 79	protein-coding
4052	chr17	63013361	63014186	+	0	NA	intron (NM_006572, intron 3 of 3)	intron (NM_006572, intron 3 of 3)	38119	NM_001282425	10672	Hs.515018	XM_005256956	ENSG00000120063	GNA13	G13	guanine nucleotide binding protein (G protein), alpha 13	protein-coding
836	chr20	12157529	12159067	+	0	NA	Intergenic	Intergenic	259785	NM_014962	22903	Hs.709366	XM_005260676	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
4028	chr17	12529800	12531331	+	0	NA	intron (NR_034145, intron 3 of 3)	intron (NR_034145, intron 3 of 3)	-38642	NM_153604	93649	Hs.567641	XM_005256863	ENSG00000141052	MYOCD	MYCD	myocardin	protein-coding
3068	chr6	117784333	117786670	+	0	NA	Intergenic	L1MD1|LINE|L1	-18319	NM_173674	285761	Hs.658304	XM_005266941	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
3989	chr16	56725410	56726787	+	0	NA	Intergenic	Intergenic	9716	NM_005952	4501	Hs.374950	NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
1735	chr1	163843799	163846513	+	0	NA	Intergenic	Intergenic	-452175	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
3512	chr1	100111020	100112491	+	0	NA	5' UTR (NM_017734, exon 1 of 8)	5' UTR (NM_017734, exon 1 of 8)	324	NM_017734	54873	Hs.483993	NM_017734	ENSG00000099260	PALMD	C1orf11|PALML	palmdelphin	protein-coding
2030	chr12	15780130	15784479	+	0	NA	intron (NM_004447, intron 18 of 20)	intron (NM_004447, intron 18 of 20)	83026	NM_030668	5800	Hs.160871	NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
2286	chr17	6500802	6503904	+	0	NA	intron (NM_014804, intron 14 of 18)	intron (NM_014804, intron 14 of 18)	-41869	NM_032731	84817	Hs.408236	NM_032731	ENSG00000129235	TXNDC17	TRP14|TXNL5	thioredoxin domain containing 17	protein-coding
1595	chrX	107549979	107553921	+	0	NA	intron (NM_033641, intron 3 of 44)	L1M5|LINE|L1	129710	NM_001287760	1288	Hs.145586	XM_005262073	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3	collagen, type IV, alpha 6	protein-coding
1750	chr1	183512301	183514807	+	0	NA	exon (NM_201568, exon 15 of 22)	exon (NM_201568, exon 15 of 22)	46185	NM_001190794	4688	Hs.587558	XM_005245207	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
4715	chr6	125517809	125525227	+	0	NA	intron (NM_001003395, intron 1 of 6)	intron (NM_001003395, intron 1 of 6)	46098	NM_001003395	7164	Hs.591347	XM_005267120	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
1610	chrX	142181602	142183359	+	0	NA	Intergenic	Intergenic	68776	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	SPANX family, member N4	protein-coding
779	chr2	208006256	208009163	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-8848	NM_001270944	8609	Hs.471221	XM_005246925	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
343	chr12	20046379	20049905	+	0	NA	Intergenic	Intergenic	-119477	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
3910	chr14	93429468	93431644	+	0	NA	intron (NM_001142593, intron 5 of 10)	intron (NM_001142593, intron 5 of 10)	41111	NM_001275	1113	Hs.150793	XM_005267292	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
981	chr3	154949687	154951844	+	0	NA	Intergenic	Intergenic	60724	NR_037902	100507537	Hs.518341	NR_037902	ENSG00000240045	RP11-451G4.2	-	uncharacterized LOC100507537	ncRNA
697	chr2	31759601	31761914	+	0	NA	intron (NM_000348, intron 1 of 4)	intron (NM_000348, intron 1 of 4)	45283	NM_000348	6716	Hs.458345	NM_000348		SRD5A2	-	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	protein-coding
3001	chr5	121498077	121502434	+	0	NA	intron (NM_001195535, intron 1 of 2)	intron (NM_001195535, intron 1 of 2)	4384	NM_001195535	100505841	Hs.733368	NM_001195535		LOC100505841	-	zinc finger protein 474-like	protein-coding
857	chr20	39193039	39194946	+	0	NA	Intergenic	Intergenic	123888	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
1010	chr4	41320111	41323488	+	0	NA	Intergenic	L2c|LINE|L2	-39825	NM_001289124	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
707	chr2	38035458	38037773	+	0	NA	Intergenic	Intergenic	20239	NR_110011	101929559	Hs.722926	XR_244986	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
3310	chr8	101470051	101472629	+	0	NA	Intergenic	Intergenic	76349	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
4279	chr20	31062049	31064136	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	8293	NM_080616	140688	Hs.729596	XM_005260282	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
4077	chr18	45423816	45426515	+	0	NA	intron (NM_001003652, intron 1 of 10)	L2b|LINE|L2	31805	NM_005901	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
261	chr11	30807329	30808869	+	0	NA	Intergenic	Intergenic	-200169	NM_001145399	744	Hs.289795	XM_005253110	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
4083	chr18	46155658	46157870	+	0	NA	intron (NM_014772, intron 2 of 11)	intron (NM_014772, intron 2 of 11)	-40207	NR_039897	100616366		NR_039897		MIR4743	-	microRNA 4743	ncRNA
4685	chr5	156692434	156694233	+	0	NA	5' UTR (NM_001037332, exon 1 of 31)	5' UTR (NM_001037332, exon 1 of 31)	146	NM_001037332	26999	Hs.519702	XM_005265883	ENSG00000055163	CYFIP2	PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
2439	chr2	19999454	20003309	+	0	NA	Intergenic	Intergenic	-67234	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	AC013400.2	long intergenic non-protein coding RNA 954	ncRNA
3739	chr11	73994269	73996030	+	0	NA	intron (NR_110031, intron 7 of 11)	intron (NR_110031, intron 7 of 11)	27572	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
321	chr12	57227135	57231144	+	0	NA	Intergenic	MER50-int|LTR|ERV1	72137	NM_003725	8630	Hs.524513	XM_005269207	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
3209	chr7	38253786	38257965	+	0	NA	intron (NM_032016, intron 4 of 8)	intron (NM_032016, intron 4 of 8)	38067	NM_032016	83930	Hs.744885	XM_005249880	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
2896	chr4	129373149	129378996	+	0	NA	Intergenic	Intergenic	-166088	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
1079	chr4	71047348	71049654	+	0	NA	Intergenic	Intergenic	-13743	NM_017855	54959	Hs.143811	XM_005265698	ENSG00000109205	ODAM	APIN	odontogenic, ameloblast asssociated	protein-coding
2422	chr2	218250183	218254088	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	369181	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
4884	chr7	120496889	120498810	+	0	NA	intron (NM_012338, intron 1 of 7)	CpG	328	NM_012338	23554	Hs.16529	XM_005250239	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
3407	chrX	64895859	64900148	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	10492	NM_002444	4478	Hs.87752	XM_005262269	ENSG00000147065	MSN	HEL70	moesin	protein-coding
1590	chrX	100125661	100128640	+	0	NA	intron (NM_001271815, intron 1 of 11)	intron (NM_001271815, intron 1 of 11)	2184	NM_001271815	27035	Hs.592227	NM_001271815	ENSG00000007952	NOX1	GP91-2|MOX1|NOH-1|NOH1	NADPH oxidase 1	protein-coding
1652	chr1	201158093	201166996	+	0	NA	intron (NM_001164586, intron 2 of 23)	AluSx|SINE|Alu	2591	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
4816	chr6	150739473	150740863	+	0	NA	Intergenic	Intergenic	50140	NM_001164695	389434	Hs.310225	XM_005266977	ENSG00000009765	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
3980	chr16	2895940	2897688	+	0	NA	Intergenic	MER87|LTR|ERV1	-4062	NR_026864	124221	Hs.434388	NM_178453	ENSG00000172460	PRSS30P	Disp|TMPRSS8|TMPRSS8P	protease, serine, 30, pseudogene	pseudo
2933	chr5	67614550	67616950	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	27354	NM_001242466	5295	Hs.734132	XM_005248542	ENSG00000145675	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
760	chr2	112305775	112307547	+	0	NA	Intergenic	Intergenic	-53969	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
863	chr20	50475816	50477881	+	0	NA	intron (NR_110016, intron 1 of 2)	intron (NR_110016, intron 1 of 2)	2604	NR_110016	101927678	Hs.683840	XR_244196	ENSG00000227964	RP5-1112F19.2	-	uncharacterized LOC101927678	ncRNA
4975	chr9	110810634	110811974	+	0	NA	Intergenic	Intergenic	-559257	NM_004235	9314	Hs.376206	XM_005252305	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
531	chr16	27687657	27689608	+	0	NA	intron (NM_015202, intron 6 of 27)	MER5A|DNA|hAT-Charlie	127164	NM_015202	23247	Hs.460459	XM_005255201	ENSG00000047578	KIAA0556	-	KIAA0556	protein-coding
2469	chr2	62752026	62754696	+	0	NA	Intergenic	L1M5|LINE|L1	-19757	NM_198276	200728	Hs.308028	XM_005264199	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
3317	chr8	125265869	125268542	+	0	NA	Intergenic	Intergenic	-83442	NR_103547	157376	Hs.662360	NR_103547	ENSG00000253868	FER1L6-AS2	C8orf78|RP11-959I15.3	FER1L6 antisense RNA 2	ncRNA
1745	chr1	177937783	177940122	+	0	NA	promoter-TSS (NM_033127)	promoter-TSS (NM_033127)	98	NM_033127	89866	Hs.149540	XM_005245573	ENSG00000120341	SEC16B	LZTR2|PGPR-p117|RGPR|SEC16S	SEC16 homolog B (S. cerevisiae)	protein-coding
2594	chr20	22771927	22779559	+	0	NA	Intergenic	L2|LINE|L2	-187588	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
3966	chr15	90857747	90859926	+	0	NA	Intergenic	Intergenic	33843	NR_028287	23766	Hs.592014	NR_028287		GABARAPL3	ATG8D	GABA(A) receptors associated protein like 3, pseudogene	pseudo
2111	chr13	99707361	99711296	+	0	NA	intron (NM_015296, intron 1 of 55)	intron (NM_015296, intron 1 of 55)	29332	NM_001130049	23348	Hs.596105	XM_005254034	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
3702	chr10	114153675	114155031	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	18397	NM_016234	51703	Hs.11638	XM_005269897	ENSG00000197142	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long-chain family member 5	protein-coding
2124	chr14	80048858	80054229	+	0	NA	intron (NM_001272020, intron 2 of 5)	intron (NM_001272020, intron 2 of 5)	305861	NR_073546	9369	Hs.368307	XM_005268218		NRXN3	C14orf60	neurexin 3	protein-coding
721	chr2	69288402	69290576	+	0	NA	intron (NM_018153, intron 3 of 12)	intron (NM_018153, intron 3 of 12)	-41325	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
1897	chr10	95134763	95138443	+	0	NA	intron (NM_013451, intron 22 of 53)	intron (NM_013451, intron 22 of 53)	105471	NM_013451	26509	Hs.602086	XM_005269693	ENSG00000138119	MYOF	FER1L3	myoferlin	protein-coding
3482	chr1	22253193	22255354	+	0	NA	intron (NM_005529, intron 1 of 96)	intron (NM_005529, intron 1 of 96)	9477	NM_005529	3339	Hs.562227	XM_005245859	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
669	chr2	228046731	228050281	+	0	NA	intron (NM_000091, intron 1 of 51)	intron (NM_000091, intron 1 of 51)	19225	NM_000091	1285	Hs.570065	XM_005246275	ENSG00000169031	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
282	chr11	99858527	99859637	+	0	NA	intron (NM_001243271, intron 8 of 20)	intron (NM_001243271, intron 8 of 20)	432206	NM_175566	53942	Hs.656783	NM_001243270	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
420	chr13	35399485	35401889	+	0	NA	Intergenic	Intergenic	-115737	NM_015678	26960	Hs.491172	XM_005266346	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
3622	chr10	12368580	12377239	+	0	NA	Intergenic	AluSx|SINE|Alu	-18674	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
989	chr3	183012431	183014503	+	0	NA	intron (NM_015078, intron 12 of 29)	intron (NM_015078, intron 12 of 29)	42435	NM_032047	84002	Hs.718506	XM_005247823	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
4630	chr5	71577209	71578365	+	0	NA	intron (NM_001286748, intron 4 of 11)	MIRc|SINE|MIR	38297	NM_001286751	23107	Hs.482491	XM_005248471	ENSG00000113048	MRPS27	MRP-S27|S27mt	mitochondrial ribosomal protein S27	protein-coding
2372	chr19	10145974	10149112	+	0	NA	Intergenic	Intergenic	-4489	NR_027300	388503	Hs.655363	NM_001013640	ENSG00000167798	C3P1	CPLP	complement component 3 precursor pseudogene	pseudo
1348	chr6	132384193	132386253	+	0	NA	Intergenic	Intergenic	-69895	NR_038981	100507254	Hs.103070	NR_038981		LINC01013	RP3-523C21.1	long intergenic non-protein coding RNA 1013	ncRNA
2945	chr5	124075740	124085759	+	0	NA	promoter-TSS (NM_020747)	promoter-TSS (NM_020747)	56	NM_020747	57507	Hs.266616	XM_005272037	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
4673	chr5	139701789	139704877	+	0	NA	Intergenic	Intergenic	-20644	NM_002622	5201	Hs.483564	XM_005268465	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
577	chr17	12502271	12503602	+	0	NA	intron (NR_034145, intron 3 of 3)	intron (NR_034145, intron 3 of 3)	49651	NR_034144	284034	Hs.376614	XR_243553	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	ncRNA
1137	chr5	4878741	4881305	+	0	NA	Intergenic	Intergenic	106429	NR_104619	101929153	Hs.385526	XR_241727	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
3511	chr1	94428553	94431200	+	0	NA	Intergenic	MIRb|SINE|MIR	-54864	NM_002061	2730	Hs.315562	XM_005270754		GCLM	GLCLR	glutamate-cysteine ligase, modifier subunit	protein-coding
3504	chr1	61918047	61919118	+	0	NA	intron (NM_001134673, intron 10 of 10)	intron (NM_001134673, intron 10 of 10)	-199392	NR_104180	645030	Hs.632410	XR_246331		RP5-833A20.1	-	uncharacterized LOC645030	ncRNA
4843	chr7	27716727	27719173	+	0	NA	Intergenic	MER68|LTR|ERVL	-15330	NM_152740	11112	Hs.406758	XM_005249595	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
3381	chr9	117109819	117112674	+	0	NA	intron (NM_030767, intron 15 of 21)	intron (NM_030767, intron 15 of 21)	19177	NM_000608	5005	Hs.719954	NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
852	chr20	23391342	23395141	+	0	NA	intron (NR_104266, intron 1 of 10)	intron (NR_104266, intron 1 of 10)	8915	NM_022080	63908	Hs.269471	XM_005260788	ENSG00000125814	NAPB	SNAP-BETA|SNAPB	N-ethylmaleimide-sensitive factor attachment protein, beta	protein-coding
643	chr19	33806824	33808634	+	0	NA	Intergenic	Intergenic	13966	NR_026887	80054	Hs.287521	NM_024988	ENSG00000267296	CEBPA-AS1	-	CEBPA antisense RNA 1 (head to head)	ncRNA
4341	chr20	43010649	43011908	+	0	NA	intron (NR_109949, intron 3 of 3)	L3|LINE|CR1	13068	NR_109949	101927219	Hs.655919	XR_244181	ENSG00000229005	HNF4A-AS1	RP5-881L22.4|uc002xlx	HNF4A antisense RNA 1	ncRNA
1120	chr4	185667157	185668891	+	0	NA	Intergenic	Intergenic	-12738	NM_024629	79682	Hs.575032	XM_005263218	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
1475	chr8	107611070	107612566	+	0	NA	intron (NM_001198533, intron 3 of 16)	intron (NM_001198533, intron 3 of 16)	-58218	NM_181354	55074	Hs.701892	XM_005250993	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
1187	chr5	112502044	112503543	+	0	NA	intron (NM_001085377, intron 3 of 18)	L3b|LINE|CR1	127819	NM_002387	4163	Hs.593171	XM_005271991	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
2968	chr5	33400073	33403510	+	0	NA	Intergenic	Intergenic	-39011	NM_001258437	6897	Hs.481860	NM_001258437	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
2092	chr13	102398659	102400597	+	0	NA	intron (NM_175929, intron 3 of 4)	L2b|LINE|L2	169367	NM_004115	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
1251	chr6	136789528	136792145	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	-2823	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
3904	chr14	85906348	85906970	+	0	NA	Intergenic	Intergenic	46400	NR_102738	100996280	Hs.742397	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
2456	chr2	38021960	38024970	+	0	NA	Intergenic	Intergenic	33389	NR_110011	101929559	Hs.722926	XR_244986	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
1192	chr5	123032082	123033388	+	0	NA	Intergenic	Intergenic	151624	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
879	chr21	40223522	40226633	+	0	NA	Intergenic	Intergenic	-4386	NR_109926	101928398	Hs.122403	XR_244310		LOC101928398	-	uncharacterized LOC101928398	ncRNA
3899	chr14	70367882	70368875	+	0	NA	intron (NM_001034852, intron 1 of 11)	intron (NM_001034852, intron 1 of 11)	22264	NM_022137	64093	Hs.497349	XM_005267995	ENSG00000198732	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding
3017	chr5	134469129	134479464	+	0	NA	intron (NM_001277348, intron 2 of 5)	MIRb|SINE|MIR	-98559	NR_105050	101927953	Hs.436898	XR_246590	ENSG00000249082	LOC101927953	-	uncharacterized LOC101927953	ncRNA
1095	chr4	141028614	141030917	+	0	NA	intron (NM_018717, intron 1 of 5)	MIRb|SINE|MIR	45468	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
3961	chr15	88020666	88021884	+	0	NA	Intergenic	Intergenic	-98885	NR_026869	145978	Hs.350808	NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
3104	chr6	13394560	13399504	+	0	NA	intron (NM_018988, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	11337	NM_001242630	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
2975	chr5	62347574	62352563	+	0	NA	Intergenic	Intergenic	475506	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
1444	chr7	141371467	141375399	+	0	NA	intron (NM_001080392, intron 4 of 8)	intron (NM_001080392, intron 4 of 8)	28520	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
1883	chr10	73714994	73718173	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-7537	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
4691	chr5	171864142	171865763	+	0	NA	intron (NM_001017995, intron 1 of 12)	intron (NM_001017995, intron 1 of 12)	16575	NM_001017995	285590	Hs.285666	XM_005265888	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
1846	chr10	5990963	5994456	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	26865	NM_002189	3601	Hs.445124	NM_001243539	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor, alpha	protein-coding
4832	chr7	134297857	134299821	+	0	NA	Intergenic	L3|LINE|CR1	-32692	NM_001724	669	Hs.198365	XM_005250545	ENSG00000172331	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
133	chr1	220659942	220661434	+	0	NA	Intergenic	Intergenic	-40837	NM_001286126	4139	Hs.497806	XM_005273133	ENSG00000116141	MARK1	MARK|Par-1c|Par1c	MAP/microtubule affinity-regulating kinase 1	protein-coding
2600	chr20	42646329	42648233	+	0	NA	intron (NM_001098797, intron 3 of 8)	intron (NM_001098797, intron 3 of 8)	72745	NM_001098798	84969	Hs.26608	XM_005260585	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
2515	chr2	133425869	133429535	+	0	NA	5' UTR (NM_144586, exon 1 of 3)	5' UTR (NM_144586, exon 1 of 3)	779	NM_144586	116372	Hs.432395	XM_005263583	ENSG00000150551	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
4616	chr5	33147694	33149093	+	0	NA	Intergenic	Intergenic	200844	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
5017	chrX	112083485	112084896	+	0	NA	promoter-TSS (NM_133265)	promoter-TSS (NM_133265)	-147	NM_133265	154796	Hs.528051	XM_005262087	ENSG00000126016	AMOT	-	angiomotin	protein-coding
1828	chr10	64322744	64325571	+	0	NA	intron (NM_199452, intron 1 of 6)	(TC)n|Simple_repeat|Simple_repeat	43950	NM_199452	22891	Hs.22653	NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
2605	chr20	56584473	56597071	+	0	NA	Intergenic	Intergenic	120322	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	-	microRNA 4532	ncRNA
56	chr1	83973744	83975147	+	0	NA	Intergenic	Intergenic	404614	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
3977	chr16	67485138	67486499	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	20782	NM_000196	3291	Hs.1376	NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid (11-beta) dehydrogenase 2	protein-coding
3006	chr5	124743921	124747559	+	0	NA	Intergenic	Intergenic	-83214	NR_109887	101927460	Hs.407582	XR_246578	ENSG00000260192	RP11-756H20.1	-	uncharacterized LOC101927460	ncRNA
4282	chr20	46922887	46925268	+	0	NA	Intergenic	Intergenic	-64577	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	RP1-66N13.3	long intergenic non-protein coding RNA 494	ncRNA
306	chr11	123344169	123346422	+	0	NA	Intergenic	MIRc|SINE|MIR	-51049	NM_020716	57476	Hs.732509	XM_005271619	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
70	chr1	143707873	143709744	+	0	NA	non-coding (NR_033189, exon 4 of 7)	non-coding (NR_033189, exon 4 of 7)	21678	NR_033189	100130000	Hs.585189	NR_033189		RP6-206I17.2	-	phosphodiesterase 4D interacting protein pseudogene	pseudo
4038	chr17	38439334	38442346	+	0	NA	Intergenic	Intergenic	-3306	NM_001254	990	Hs.405958	NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6	cell division cycle 6	protein-coding
166	chr10	20162900	20166889	+	0	NA	intron (NM_001282736, intron 1 of 12)	intron (NM_001282736, intron 1 of 12)	59522	NM_032812	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
2225	chr15	90221388	90224985	+	0	NA	promoter-TSS (NM_001145311)	promoter-TSS (NM_001145311)	-538	NM_002666	5346	Hs.103253	XM_005254934	ENSG00000166819	PLIN1	FPLD4|PERI|PLIN	perilipin 1	protein-coding
1578	chrX	76022414	76024125	+	0	NA	Intergenic	LTR18A|LTR|ERVL	116516	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
4352	chr20	56254678	56257678	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	9502	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
30	chr1	16574562	16576975	+	0	NA	TTS (NM_018994)	TTS (NM_018994)	-12109	NM_030907	79363	Hs.546430	NM_030907	ENSG00000132881	RSG1	C1orf89	REM2 and RAB-like small GTPase 1	protein-coding
466	chr14	62480985	62487039	+	0	NA	intron (NM_031914, intron 1 of 5)	L2a|LINE|L2	21471	NM_031914	83851	Hs.404139	XM_005268123	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r|yt14r	synaptotagmin XVI	protein-coding
134	chr1	224006737	224008465	+	0	NA	intron (NM_005426, intron 2 of 18)	L2a|LINE|L2	26073	NM_001031685	7159	Hs.523968	XM_005273246	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein, 2	protein-coding
3038	chr5	171862358	171866438	+	0	NA	intron (NM_001017995, intron 1 of 12)	intron (NM_001017995, intron 1 of 12)	17129	NM_001017995	285590	Hs.285666	XM_005265888	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
2151	chr14	79744554	79747380	+	0	NA	non-coding (NR_073546, exon 1 of 8)	non-coding (NR_073546, exon 1 of 8)	285	NR_073546	9369	Hs.368307	XM_005268218		NRXN3	C14orf60	neurexin 3	protein-coding
618	chr18	45752805	45755747	+	0	NA	Intergenic	Intergenic	-90596	NM_001039360	201501	Hs.732162	XM_005258225	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
4732	chr6	7974165	7976835	+	0	NA	intron (NR_037616, intron 4 of 12)	intron (NR_037616, intron 4 of 12)	-10835	NR_027712	206426	Hs.676966	NR_027712		PIP5K1P1	-	phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1	pseudo
3290	chr7	158813124	158816302	+	0	NA	intron (NR_024394, intron 4 of 4)	intron (NR_024394, intron 4 of 4)	13668	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
848	chr20	22678885	22682376	+	0	NA	Intergenic	Intergenic	-92475	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
3717	chr11	15216102	15218358	+	0	NA	intron (NM_001278316, intron 5 of 10)	intron (NM_001278316, intron 5 of 10)	46582	NM_001278313	387755	Hs.591997	XM_005252911	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
1904	chr10	112624141	112628694	+	0	NA	Intergenic	Intergenic	4245	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
1761	chr1	197935549	197937266	+	0	NA	Intergenic	Intergenic	49890	NM_020204	56956	Hs.706475	XM_005245349	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
2196	chr15	55678823	55682602	+	0	NA	intron (NR_037923, intron 9 of 15)	MIR|SINE|MIR	-15480	NR_030358	693213		NR_030358		MIR628	MIRN628|hsa-mir-628	microRNA 628	ncRNA
1323	chr6	85575854	85578629	+	0	NA	Intergenic	Intergenic	-103287	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
1455	chr8	13104667	13105920	+	0	NA	intron (NM_182643, intron 5 of 17)	intron (NM_182643, intron 5 of 17)	-114484	NM_006094	10395	Hs.134296	XM_005273374	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	deleted in liver cancer 1	protein-coding
2662	chr21	33260752	33263887	+	0	NA	intron (NM_014586, intron 1 of 10)	AT_rich|Low_complexity|Low_complexity	16691	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
1492	chr8	139684177	139686315	+	0	NA	intron (NM_152888, intron 41 of 64)	intron (NM_152888, intron 41 of 64)	-176181	NM_015912	51059	Hs.126024	XM_005250928	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
4658	chr5	124076866	124080530	+	0	NA	intron (NM_020747, intron 1 of 8)	intron (NM_020747, intron 1 of 8)	2107	NM_020747	57507	Hs.266616	XM_005272037	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
3560	chr1	186816586	186819469	+	0	NA	intron (NM_024420, intron 1 of 17)	intron (NM_024420, intron 1 of 17)	19995	NM_024420	5321	Hs.497200	XM_005245267	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
1134	chr5	3310238	3312377	+	0	NA	Intergenic	Intergenic	133358	NR_104617	102467074	Hs.575250	NR_104617		LOC102467074	-	uncharacterized LOC102467074	ncRNA
3853	chr13	96255793	96257582	+	0	NA	intron (NM_198968, intron 14 of 22)	intron (NM_198968, intron 14 of 22)	40273	NM_014934	22873	Hs.742077	XM_005254032	ENSG00000134874	DZIP1	DZIP|DZIPt1	DAZ interacting zinc finger protein 1	protein-coding
4455	chr3	105716768	105717538	+	0	NA	Intergenic	L1MA2|LINE|L1	-129266	NM_170662	868	Hs.430589	XM_005247852	ENSG00000114423	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
4131	chr2	96925642	96927895	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	4983	NM_017849	55654	Hs.735706	NM_001193304		TMEM127	-	transmembrane protein 127	protein-coding
1100	chr4	144688865	144690232	+	0	NA	Intergenic	L2|LINE|L2	-67720	NM_001168235	166752	Hs.252714	NM_001168235	ENSG00000183090	FREM3	-	FRAS1 related extracellular matrix 3	protein-coding
2861	chr4	15117101	15121339	+	0	NA	Intergenic	Intergenic	114922	NM_001177381	132864	Hs.656937	XM_005248135	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
1377	chr6	160656843	160661329	+	0	NA	intron (NM_003058, intron 9 of 10)	MER41A|LTR|ERV1	20877	NM_003058	6582	Hs.436385	NM_003058	ENSG00000112499	SLC22A2	OCT2	solute carrier family 22 (organic cation transporter), member 2	protein-coding
4663	chr5	127292114	127296206	+	0	NA	Intergenic	Intergenic	124606	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
185	chr10	66792057	66794303	+	0	NA	Intergenic	Intergenic	207895	NR_001446	305	Hs.591361	NR_001446		ANXA2P3	ANX2L3|ANX2P3|LIP2|LPC2C	annexin A2 pseudogene 3	pseudo
1719	chr1	144518528	144522394	+	0	NA	intron (NR_024584, intron 2 of 3)	CpG	1508	NR_024584	728875	Hs.662922	NR_024584	ENSG00000236943	RP11-640M9.1	-	uncharacterized LOC728875	ncRNA
2716	chr3	111654141	111657387	+	0	NA	intron (NM_001134438, intron 6 of 17)	intron (NM_001134438, intron 6 of 17)	-41959	NM_018394	55347	Hs.477115	NM_001272069	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10	protein-coding
4	chr1	21577481	21579748	+	0	NA	intron (NM_001113347, intron 6 of 16)	intron (NM_001113347, intron 6 of 16)	27569	NM_001113347	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
127	chr1	207525327	207526814	+	0	NA	intron (NM_001114752, intron 10 of 10)	intron (NM_001114752, intron 10 of 10)	31253	NM_001114752	1604	Hs.126517	XM_005273077	ENSG00000196352	CD55	CR|CROM|DAF|TC	CD55 molecule, decay accelerating factor for complement (Cromer blood group)	protein-coding
71	chr1	143728713	143732699	+	0	NA	intron (NR_027468, intron 1 of 4).2	intron (NR_027468, intron 1 of 4).2	13751	NR_027468	388685	Hs.745431	NM_207400		LINC01138	-	long intergenic non-protein coding RNA 1138	ncRNA
1648	chr1	184760694	184762982	+	0	NA	3' UTR (NM_052966, exon 14 of 14)	3' UTR (NM_052966, exon 14 of 14)	-37797	NM_025191	80267	Hs.523811	XM_005245498	ENSG00000116406	EDEM3	C1orf22	ER degradation enhancer, mannosidase alpha-like 3	protein-coding
1481	chr8	115648772	115650066	+	0	NA	Intergenic	L1PA2|LINE|L1	1030820	NM_001282902	7227	Hs.657018	XM_005251046	ENSG00000104447	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
3596	chr1	219728226	219729369	+	0	NA	Intergenic	Intergenic	-317822	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
2927	chr5	118620000	118625866	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	18546	NM_001286815	25816	Hs.656274	XM_005271952		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
2266	chr16	85422666	85425978	+	0	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-84391	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
2915	chr4	159991946	159993628	+	0	NA	Intergenic	Intergenic	-36454	NM_152543	152940	Hs.415576	NM_152543		C4orf45	-	chromosome 4 open reading frame 45	protein-coding
4564	chr4	129271028	129272425	+	0	NA	Intergenic	LTR27|LTR|ERV1	-61742	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
512	chr15	51171906	51174954	+	0	NA	Intergenic	Intergenic	-27439	NM_007347	23431	Hs.413366	XM_005254264	ENSG00000081014	AP4E1	CPSQ4|SPG51	adaptor-related protein complex 4, epsilon 1 subunit	protein-coding
463	chr14	59741503	59743656	+	0	NA	intron (NM_001270520, intron 2 of 24)	intron (NM_001270520, intron 2 of 24)	12420	NM_014992	23002	Hs.19156	XM_005267430	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
517	chr15	68833742	68838145	+	0	NA	Intergenic	Intergenic	-35365	NM_006091	10391	Hs.551213	XM_005254124	ENSG00000103647	CORO2B	CLIPINC	coronin, actin binding protein, 2B	protein-coding
4963	chr9	96901105	96903000	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-36187	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
722	chr2	69376123	69378402	+	0	NA	intron (NM_032208, intron 12 of 17)	intron (NM_032208, intron 12 of 17)	46448	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
1363	chr6	137978278	137979888	+	0	NA	Intergenic	L3|LINE|CR1	-163552	NM_175747	167826	Hs.195398	NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
3588	chr1	209439987	209440580	+	0	NA	Intergenic	L3|LINE|CR1	-161885	NM_001104548	642587	Hs.510543	XM_005273225		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
1109	chr4	158838332	158840956	+	0	NA	Intergenic	Intergenic	254074	NM_016613	51313	Hs.567498	XM_005263054	ENSG00000164125	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
3051	chr6	22034865	22038252	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	110864	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
2067	chr12	92986356	92991998	+	0	NA	Intergenic	L1PA15|LINE|L1	-107442	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
1597	chrX	107639270	107640296	+	0	NA	intron (NM_033641, intron 2 of 44)	intron (NM_033641, intron 2 of 44)	41877	NM_001287760	1288	Hs.145586	XM_005262073	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3	collagen, type IV, alpha 6	protein-coding
4060	chr17	73605804	73607688	+	0	NA	intron (NR_003587, intron 21 of 60)	intron (NR_003587, intron 21 of 60)	22607	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
2154	chr14	90376340	90379896	+	0	NA	intron (NM_001284267, intron 5 of 5)	intron (NM_001284267, intron 5 of 5)	42783	NM_001284269	90141	Hs.123232	XM_005268189	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
4171	chr2	43426303	43427788	+	0	NA	Intergenic	Intergenic	26700	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
742	chr2	85803222	85805883	+	0	NA	promoter-TSS (NM_003761)	promoter-TSS (NM_003761)	-62	NM_003761	8673	Hs.714302	NM_003761	ENSG00000118640	VAMP8	EDB|VAMP-8	vesicle-associated membrane protein 8	protein-coding
58	chr1	87857531	87858805	+	0	NA	Intergenic	Intergenic	-20830	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	RP4-544H6.2	-	uncharacterized LOC100505768	ncRNA
153	chr10	63519863	63522258	+	0	NA	intron (NM_173554, intron 6 of 6)	intron (NM_173554, intron 6 of 6)	98341	NM_173554	219621	Hs.673160	XM_005269598	ENSG00000183346	C10orf107	bA63A2.1	chromosome 10 open reading frame 107	protein-coding
4980	chr9	118352478	118353082	+	0	NA	Intergenic	LTR78|LTR|ERV1	153738	NR_109805	101928775	Hs.522362	XR_242668		LOC101928775	-	uncharacterized LOC101928775	ncRNA
2932	chr5	58255182	58274603	+	0	NA	TTS (NM_006203)	TTS (NM_006203)	30867	NM_001197223	5144	Hs.117545	XM_005248537	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
2387	chr19	43752422	43756286	+	0	NA	Intergenic	LTR54B|LTR|ERV1	-1556	NR_033888	284344	Hs.678987	NR_033888	ENSG00000241104	LOC284344	-	uncharacterized LOC284344	ncRNA
4086	chr18	47074767	47075651	+	0	NA	Intergenic	L2a|LINE|L2	-13218	NM_006033	9388	Hs.465102	XM_005258390	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase, endothelial	protein-coding
101	chr1	180489932	180492674	+	0	NA	Intergenic	Intergenic	-19281	NM_032360	84320	Hs.200051	XM_005245545	ENSG00000135847	ACBD6	-	acyl-CoA binding domain containing 6	protein-coding
4362	chr21	19060880	19062355	+	0	NA	Intergenic	L1PB1|LINE|L1	-76349	NM_001130914	10950	Hs.473420	NM_001130914	ENSG00000154640	BTG3	ANA|TOB5|TOB55|TOFA	BTG family, member 3	protein-coding
340	chr12	15931855	15934925	+	0	NA	intron (NM_004447, intron 1 of 20)	L2c|LINE|L2	9120	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
3906	chr14	85993839	85996950	+	0	NA	Intergenic	Intergenic	-1094	NM_013231	23768	Hs.744139	XM_005267489	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
3655	chr10	29237762	29238850	+	0	NA	Intergenic	Intergenic	102969	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
4012	chr16	87839213	87841419	+	0	NA	Intergenic	Intergenic	27950	NR_106833	102465464		NR_106833		MIR6775	hsa-mir-6775	microRNA mir-6775	ncRNA
2425	chr2	235731676	235733852	+	0	NA	Intergenic	Intergenic	-127864	NM_014521	23677	Hs.516777	XM_005246069	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
3536	chr1	155952293	155954027	+	0	NA	Intergenic	Intergenic	-4824	NM_001162384	9181	Hs.743352	XM_005245587	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|P40	Rho/Rac guanine nucleotide exchange factor (GEF) 2	protein-coding
1703	chr1	65622689	65626864	+	0	NA	intron (NM_001005353, intron 2 of 5)	intron (NM_001005353, intron 2 of 5)	10926	NM_013410	205	Hs.10862	NM_001005353	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
4671	chr5	134707045	134708354	+	0	NA	intron (NM_001040158, intron 2 of 8)	intron (NM_001040158, intron 2 of 8)	27229	NM_138610	9555	Hs.599225	XM_005272130	ENSG00000113648	H2AFY	H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2	H2A histone family, member Y	protein-coding
4519	chr4	143015052	143018944	+	0	NA	intron (NM_001101669, intron 23 of 25)	intron (NM_001101669, intron 23 of 25)	459249	NM_000585	3600	Hs.602618	NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
4018	chr17	56474266	56477433	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	19082	NM_017763	54894	Hs.584916	NM_017763	ENSG00000108375	RNF43	RNF124|URCC	ring finger protein 43	protein-coding
3571	chr1	201569702	201570459	+	0	NA	Intergenic	Intergenic	-47370	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
1172	chr5	82791461	82792817	+	0	NA	intron (NM_004385, intron 5 of 14)	intron (NM_004385, intron 5 of 14)	24646	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
2510	chr2	112416191	112418632	+	0	NA	Intergenic	MER21C|LTR|ERVL	-164719	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
2458	chr2	40101659	40103678	+	0	NA	Intergenic	Intergenic	-42106	NR_038441	100128590	Hs.744988	XR_244915	ENSG00000227028	SLC8A1-AS1	AC007254.3	SLC8A1 antisense RNA 1	ncRNA
834	chr20	11758099	11759686	+	0	NA	Intergenic	Intergenic	-112479	NM_001282552	22903	Hs.709366	XM_005260676	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
4912	chr8	69169465	69170283	+	0	NA	Intergenic	AluSz6|SINE|Alu	-73083	NM_052958	116328	Hs.491941	XM_005251149	ENSG00000165084	C8orf34	VEST-1|VEST1	chromosome 8 open reading frame 34	protein-coding
285	chr11	102339304	102341006	+	0	NA	Intergenic	Intergenic	-16380	NM_052932	114908	Hs.503709	NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
4397	chr3	114818254	114819718	+	0	NA	intron (NM_015642, intron 1 of 9)	intron (NM_015642, intron 1 of 9)	-28725	NM_001164343	26137	Hs.744879	XM_005247325	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|RP11-553L6.5|ZNF288	zinc finger and BTB domain containing 20	protein-coding
2441	chr2	26495565	26498281	+	0	NA	intron (NM_001281513, intron 7 of 16)	intron (NM_001281513, intron 7 of 16)	29307	NM_001281512	3032	Hs.515848	NM_000183	ENSG00000138029	HADHB	ECHB|MTPB|TP-BETA	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit	protein-coding
2414	chr2	128154908	128157056	+	0	NA	Intergenic	Intergenic	-20014	NM_000312	5624	Hs.224698	XM_005263715	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C (inactivator of coagulation factors Va and VIIIa)	protein-coding
1216	chr5	148540829	148542992	+	0	NA	intron (NM_014945, intron 2 of 23)	intron (NM_014945, intron 2 of 23)	20856	NM_014945	22885	Hs.49688	XM_005268391	ENSG00000173210	ABLIM3	-	actin binding LIM protein family, member 3	protein-coding
4657	chr5	123145621	123146374	+	0	NA	Intergenic	Intergenic	264886	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
3879	chr14	90978186	90980574	+	0	NA	Intergenic	MamRep4096|DNA|hAT?	57806	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	AL096869.5	long intergenic non-protein coding RNA 642	ncRNA
4423	chr3	39182298	39184135	+	0	NA	TTS (NM_033027)	TTS (NM_033027)	3519	NR_106880	102466743		NR_106880		MIR6822	hsa-mir-6822	microRNA mir-6822	ncRNA
2194	chr15	50454339	50461837	+	0	NA	Intergenic	L1MEg|LINE|L1	-16305	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	solute carrier family 27 (fatty acid transporter), member 2	protein-coding
2285	chr17	2905102	2909400	+	0	NA	intron (NM_001100398, intron 13 of 23)	intron (NM_001100398, intron 13 of 23)	59650	NM_014566	8386	Hs.553508	NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31	olfactory receptor, family 1, subfamily D, member 5	protein-coding
3092	chr6	7504557	7506950	+	0	NA	Intergenic	Intergenic	-36117	NM_001008844	1832	Hs.519873	XM_005248864	ENSG00000096696	DSP	DP|DPI|DPII	desmoplakin	protein-coding
1135	chr5	3740561	3742153	+	0	NA	Intergenic	Intergenic	145189	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
4198	chr2	76355959	76356850	+	0	NA	Intergenic	Intergenic	-418293	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
2864	chr4	24471245	24476038	+	0	NA	Intergenic	CpG	48272	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
96	chr1	169496131	169499233	+	0	NA	intron (NM_000130, intron 16 of 24)	intron (NM_000130, intron 16 of 24)	-42474	NM_006996	10560	Hs.30246	XM_005244840	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding
1667	chr1	234699559	234702193	+	0	NA	Intergenic	Intergenic	-33351	NR_038426	100506795	Hs.448989	XR_247017	ENSG00000231768	RP5-855F14.1	-	uncharacterized LOC100506795	ncRNA
3836	chr12	111371562	111373038	+	0	NA	Intergenic	Intergenic	-2106	NR_036513	100131138	Hs.152129	NR_036513	ENSG00000185847	LOC100131138	-	uncharacterized LOC100131138	ncRNA
2114	chr13	110520650	110523342	+	0	NA	Intergenic	CpG	-83082	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
569	chr17	75610986	75613537	+	0	NA	Intergenic	Intergenic	69238	NR_040050	100507351	Hs.736339	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
4269	chr2	234613318	234618001	+	0	NA	intron (NM_001072, intron 1 of 4)	MER70B|LTR|ERVL	-5979	NM_019078	54579	Hs.554822	NM_019078	ENSG00000240224	UGT1A5	UDPGT|UDPGT 1-5|UGT1E	UDP glucuronosyltransferase 1 family, polypeptide A5	protein-coding
3111	chr6	21751852	21755938	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	87220	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
1396	chr7	29229353	29230864	+	0	NA	Intergenic	Intergenic	-4013	NM_004067	1124	Hs.710429	XM_005249597	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
1760	chr1	197922840	197926344	+	0	NA	Intergenic	Intergenic	38075	NM_020204	56956	Hs.706475	XM_005245349	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
391	chr12	100898063	100899688	+	0	NA	intron (NM_001206992, intron 1 of 8)	intron (NM_001206992, intron 1 of 8)	1737	NM_001206993	9971	Hs.732506	XR_245969	ENSG00000012504	NR1H4	BAR|FXR|HRR-1|HRR1|RIP14	nuclear receptor subfamily 1, group H, member 4	protein-coding
2033	chr12	15883946	15887529	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	56773	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
4335	chr20	31362836	31366624	+	0	NA	intron (NM_001207055, intron 1 of 18)	intron (NM_001207055, intron 1 of 18)	-2928	NM_175850	1789	Hs.713611	XR_244135	ENSG00000088305	DNMT3B	ICF|ICF1|M.HsaIIIB	DNA (cytosine-5-)-methyltransferase 3 beta	protein-coding
2676	chr21	47928503	47931630	+	0	NA	intron (NM_001146116, intron 7 of 37)	MLT2A2|LTR|ERVL	47682	NR_046400	100862692	Hs.737163	NR_046400		DIP2A-IT1	AP000337.3	DIP2A intronic transcript 1 (non-protein coding)	ncRNA
180	chr10	52359206	52361071	+	0	NA	intron (NM_147156, intron 1 of 10)	MIRc|SINE|MIR	23599	NM_147156	259230	Hs.654698	XM_005269675	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
1375	chr6	160320462	160322365	+	0	NA	Intergenic	Intergenic	-6561	NM_002377	4142	Hs.99900	XM_005266987	ENSG00000130368	MAS1	MAS	MAS1 oncogene	protein-coding
2907	chr4	146600043	146602369	+	0	NA	promoter-TSS (NM_001080531)	promoter-TSS (NM_001080531)	-150	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
4353	chr20	56290773	56294816	+	0	NA	Intergenic	Intergenic	-6202	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
4097	chr18	61343777	61352007	+	0	NA	Intergenic	Intergenic	-18695	NM_006919	6317	Hs.227948	XM_005266736	ENSG00000057149	SERPINB3	HsT1196|SCC|SCCA-1|SCCA-PD|SCCA1|T4-A	serpin peptidase inhibitor, clade B (ovalbumin), member 3	protein-coding
1877	chr10	65458953	65460997	+	0	NA	Intergenic	Intergenic	178852	NM_001001330	221035	Hs.499833	XM_005269620	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
2939	chr5	95134614	95142054	+	0	NA	Intergenic	AluSx1|SINE|Alu	20243	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
246	chr11	4847194	4847987	+	0	NA	Intergenic	Intergenic	4974	NM_001004753	119694	Hs.553562	NM_001004753	ENSG00000176925	OR51F2	OR11-23	olfactory receptor, family 51, subfamily F, member 2	protein-coding
2227	chr15	90857321	90860358	+	0	NA	Intergenic	Intergenic	33840	NR_028287	23766	Hs.592014	NR_028287		GABARAPL3	ATG8D	GABA(A) receptors associated protein like 3, pseudogene	pseudo
4001	chr16	69206866	69208357	+	0	NA	Intergenic	L1M5|LINE|L1	-13439	NM_006750	6645	Hs.461117	XM_005256120	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
1168	chr5	71687628	71689084	+	0	NA	Intergenic	Intergenic	72162	NM_001284403	79810	Hs.126906	XM_005248601	ENSG00000049883	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
3241	chr7	38902146	38904224	+	0	NA	intron (NM_080631, intron 3 of 27)	intron (NM_080631, intron 3 of 27)	45615	NM_080631	27072	Hs.592184	NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|hVps41p	vacuolar protein sorting 41 homolog (S. cerevisiae)	protein-coding
4102	chr19	7455409	7457229	+	0	NA	Intergenic	Intergenic	-3680	NM_015318	23370	Hs.736818	XM_005272463	ENSG00000104880	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
4323	chr20	16387746	16388543	+	0	NA	intron (NM_001199865, intron 15 of 24)	intron (NM_001199865, intron 15 of 24)	165935	NM_024704	55614	Hs.101774	XM_005260750	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
536	chr16	9409480	9410940	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	81436	NR_036166	100422920		NR_036166	ENSG00000265841	MIR548X	-	microRNA 548x	ncRNA
4661	chr5	127148303	127150368	+	0	NA	Intergenic	Intergenic	160628	NM_001127385	613212	Hs.66194	NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
1767	chr1	201644210	201646143	+	0	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	27726	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
1653	chr1	201242934	201247107	+	0	NA	Intergenic	MIR3|SINE|MIR	-7560	NM_001005337	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)	protein-coding
2237	chr16	4931021	4933600	+	0	NA	TTS (NM_002705)	TTS (NM_002705)	30233	NM_016936	29855	Hs.440219	XM_005255277	ENSG00000118900	UBN1	VT|VT4	ubinuclein 1	protein-coding
1688	chr1	41173752	41179075	+	0	NA	intron (NM_001142590, intron 2 of 14)	intron (NM_001142590, intron 2 of 14)	-18480	NR_024567	100130557	Hs.233458	NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
3311	chr8	101520756	101525408	+	0	NA	intron (NM_001270379, intron 5 of 5)	intron (NM_001270379, intron 5 of 5)	48857	NM_001270378	157567	Hs.530199	XM_005250797	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
1458	chr8	32822521	32824324	+	0	NA	Intergenic	Intergenic	244071	NM_001159996	3084	Hs.668810	XM_005273485	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|NDF|SMDF	neuregulin 1	protein-coding
2958	chr5	5144795	5149242	+	0	NA	intron (NM_139056, intron 3 of 22)	intron (NM_139056, intron 3 of 22)	6575	NM_139056	170690	Hs.661915	NM_139056	ENSG00000145536	ADAMTS16	ADAMTS16s	ADAM metallopeptidase with thrombospondin type 1 motif, 16	protein-coding
444	chr14	22732881	22734426	+	0	NA	Intergenic	Intergenic	324490	NM_001344	1603	Hs.82890	NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
508	chr15	39592182	39594083	+	0	NA	Intergenic	Intergenic	50247	NM_207445	400360	Hs.376109	NM_207445	ENSG00000175746	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
1336	chr6	116531385	116532669	+	0	NA	intron (NM_152729, intron 6 of 11)	intron (NM_152729, intron 6 of 11)	43234	NM_021648	23270	Hs.284141	NM_021648	ENSG00000187189	TSPYL4	dJ486I3.2	TSPY-like 4	protein-coding
4025	chr17	1986659	1988492	+	0	NA	intron (NM_001256827, intron 7 of 11)	intron (NM_001256827, intron 7 of 11)	4480	NM_001282326	23293	Hs.448342	XM_005256569	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
3260	chr7	94212570	94214480	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	71996	NM_001099400	8910	Hs.371199	XM_005250675	ENSG00000127990	SGCE	DYT11|ESG	sarcoglycan, epsilon	protein-coding
1089	chr4	90188550	90191162	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	39305	NM_198281	285513	Hs.605082	XM_005262936		GPRIN3	GRIN3	GPRIN family member 3	protein-coding
12	chr1	197407528	197418419	+	0	NA	intron (NR_047564, intron 11 of 11)	intron (NR_047564, intron 11 of 11)	175639	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
3036	chr5	170059622	170061604	+	0	NA	intron (NM_001278339, intron 1 of 7)	intron (NM_001278339, intron 1 of 7)	129573	NM_001278340	30820	Hs.484111	NM_001034837	ENSG00000182132	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
1554	chrX	4969382	4970772	+	0	NA	Intergenic	LTR25|LTR|ERV1	1175167	NM_001282146	57502	Hs.21107	XM_005274564	ENSG00000146938	NLGN4X	ASPGX2|AUTSX2|HLNX|HNL4X|NLGN4	neuroligin 4, X-linked	protein-coding
2168	chr15	68563915	68568676	+	0	NA	Intergenic	MIR|SINE|MIR	-3846	NM_015322	10116	Hs.592737	NM_015322		FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog b (C. elegans)	protein-coding
4137	chr2	1597140	1598612	+	0	NA	Intergenic	Intergenic	150415	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
3518	chr1	144519059	144521968	+	0	NA	intron (NR_024584, intron 2 of 3)	CpG	1456	NR_024584	728875	Hs.662922	NR_024584	ENSG00000236943	RP11-640M9.1	-	uncharacterized LOC728875	ncRNA
3707	chr10	133810291	133812165	+	0	NA	Intergenic	Intergenic	-15793	NM_004052	664	Hs.144873	NM_004052		BNIP3	NIP3	BCL2/adenovirus E1B 19kDa interacting protein 3	protein-coding
4806	chr6	136048509	136050573	+	0	NA	Intergenic	Intergenic	-123293	NM_018945	27115	Hs.744230	XM_005266931	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
3343	chr9	22341738	22344105	+	0	NA	Intergenic	Intergenic	-103919	NM_022160	63951	Hs.371976	NM_022160		DMRTA1	DMO|DMRT4	DMRT-like family A1	protein-coding
3413	chrX	8815890	8818290	+	0	NA	Intergenic	LTR24C|LTR|ERV1	-47666	NM_174951	171482	Hs.382062	NM_001171186	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9, member A	protein-coding
4036	chr17	31203207	31204973	+	0	NA	promoter-TSS (NM_015194)	promoter-TSS (NM_015194)	-188	NM_015194	4642	Hs.602063	NM_015194	ENSG00000176658	MYO1D	myr4	myosin ID	protein-coding
875	chr21	36562236	36563850	+	0	NA	Intergenic	Intergenic	-141448	NM_001754	861	Hs.612648	XM_005261067	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
1522	chr9	71793174	71794469	+	0	NA	intron (NM_001170630, intron 1 of 18)	intron (NM_001170630, intron 1 of 18)	4850	NM_001170630	9414	Hs.736223	XM_005252311	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|X104|ZO2	tight junction protein 2	protein-coding
3467	chr1	858534	861399	+	0	NA	Intergenic	CpG	-1155	NM_152486	148398	Hs.335293	XM_005244723	ENSG00000187634	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
116	chr1	196031771	196033882	+	0	NA	Intergenic	Intergenic	518785	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
136	chr1	227530531	227532968	+	0	NA	Intergenic	Intergenic	-25923	NM_003607	8476	Hs.35433	XM_005273317	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
1197	chr5	126411901	126413643	+	0	NA	Intergenic	Intergenic	-3588	NM_001164479	401207	Hs.49573	NM_001164478	ENSG00000164241	C5orf63	YDR286C	chromosome 5 open reading frame 63	protein-coding
4390	chr22	31639456	31641030	+	0	NA	intron (NM_005569, intron 2 of 15)	intron (NM_005569, intron 2 of 15)	-4105	NM_001031801	3985	Hs.474596	XM_005261602	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
1580	chrX	76137888	76138761	+	0	NA	Intergenic	AluY|SINE|Alu	1461	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
3274	chr7	111706731	111709088	+	0	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	138553	NM_014705	9732	Hs.654652	XM_005250724	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
2146	chr14	65646407	65648209	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	41757	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
2419	chr2	210288063	210292037	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	1279	NM_001039538	4133	Hs.368281	XM_005246554	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
4604	chr5	910779	914005	+	0	NA	intron (NM_004237, intron 10 of 12)	intron (NM_004237, intron 10 of 12)	19423	NM_001166260	9319	Hs.436187	XM_005248388	ENSG00000071539	TRIP13	16E1BP	thyroid hormone receptor interactor 13	protein-coding
308	chr11	126726484	126729818	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-82491	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
3485	chr1	33413504	33416006	+	0	NA	intron (NM_153341, intron 2 of 8)	intron (NM_153341, intron 2 of 8)	15531	NM_153341	127544	Hs.591504	XM_005270460	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
3802	chr12	57378874	57380231	+	0	NA	Intergenic	Intergenic	-8803	NM_007264	11318	Hs.483909	NM_007264	ENSG00000166856	GPR182	7TMR|ADMR|AM-R|AMR|G10D|gamrh|hrhAMR	G protein-coupled receptor 182	protein-coding
4811	chr6	143165406	143168545	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	99363	NM_006734	3097	Hs.510172	XM_005266956	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
3004	chr5	123984596	123988696	+	0	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	94159	NM_020747	57507	Hs.266616	XM_005272037	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
3676	chr10	73857039	73858538	+	0	NA	intron (NR_045564, intron 9 of 9)	intron (NR_045564, intron 9 of 9)	-8998	NM_001134434	9806	Hs.523009	XM_005270302	ENSG00000107742	SPOCK2	testican-2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	protein-coding
3939	chr15	62404674	62405997	+	0	NA	Intergenic	Intergenic	46159	NM_207322	145741	Hs.202656	NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
3027	chr5	143575942	143579459	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	27263	NM_020768	57528	Hs.661870	XM_005268492		KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
301	chr11	122227656	122230306	+	0	NA	Intergenic	Intergenic	-155211	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
4686	chr5	156716106	156719328	+	0	NA	intron (NM_001037332, intron 3 of 30)	intron (NM_001037332, intron 3 of 30)	21355	NM_014376	26999	Hs.519702	XM_005265883	ENSG00000055163	CYFIP2	PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
4272	chr2	234672131	234674104	+	0	NA	intron (NM_000463, intron 1 of 4)	intron (NM_000463, intron 1 of 4)	4198	NM_000463	54658	Hs.554822	NM_000463	ENSG00000242366	UGT1A1	BILIQTL1|GNT1|HUG-BR1|UDPGT|UDPGT 1-1|UGT1|UGT1A	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding
51	chr1	71131592	71133707	+	0	NA	Intergenic	Intergenic	255748	NM_001902	1491	Hs.19904	XM_005270509	ENSG00000116761	CTH	-	cystathionase (cystathionine gamma-lyase)	protein-coding
1758	chr1	192882752	192884708	+	0	NA	Intergenic	MIR3|SINE|MIR	105561	NM_002923	5997	Hs.78944	NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G-protein signaling 2, 24kDa	protein-coding
456	chr14	32976350	32977920	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	178656	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
1822	chr10	47072638	47088584	+	0	NA	Intergenic	Intergenic	-2923	NM_005972	5540	Hs.524719	NM_001278794	ENSG00000204174	NPY4R	NPY4-R|PP1|PPYR1|Y4	neuropeptide Y receptor Y4	protein-coding
3063	chr6	84735686	84739076	+	0	NA	Intergenic	Intergenic	-6039	NM_138409	112609	Hs.370055	XM_005248644	ENSG00000135324	MRAP2	BMIQ18|C6orf117|RP11-51G5.2|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
1033	chr4	23335273	23336822	+	0	NA	intron (NR_039674, intron 1 of 2)	intron (NR_039674, intron 1 of 2)	128679	NR_039674	100616252		NR_039674	ENSG00000221466	MIR548AJ2	-	microRNA 548aj-2	ncRNA
4059	chr17	72438272	72439994	+	0	NA	intron (NM_018653, intron 2 of 3)	intron (NM_018653, intron 2 of 3)	9297	NM_018653	55890	Hs.446438	XM_005257512		GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor, family C, group 5, member C	protein-coding
2736	chr3	23620885	23623017	+	0	NA	intron (NR_039621, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	-225433	NM_182666	7324	Hs.164853	XM_005265431	ENSG00000170142	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
2258	chr16	69212574	69214793	+	0	NA	Intergenic	Intergenic	-7367	NM_006750	6645	Hs.461117	XM_005256120	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
1539	chr9	101571638	101574423	+	0	NA	intron (NM_024642, intron 1 of 9)	intron (NM_024642, intron 1 of 9)	3049	NM_024642	79695	Hs.47099	XM_005252210	ENSG00000119514	GALNT12	CRCS1|GalNAc-T12	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)	protein-coding
796	chr2	218870322	218872317	+	0	NA	Intergenic	Intergenic	-28338	NR_034176	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
2349	chr18	46427676	46430048	+	0	NA	Intergenic	Intergenic	40315	NM_001190823	4092	Hs.465087	NM_001190821	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
366	chr12	71550838	71552844	+	0	NA	promoter-TSS (NM_004616)	promoter-TSS (NM_004616)	-62	NM_004616	7103	Hs.170563	NM_004616	ENSG00000127324	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
4506	chr3	193561152	193562702	+	0	NA	Intergenic	Intergenic	150100	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
1541	chr9	109714990	109716346	+	0	NA	intron (NR_031752, intron 1 of 3)	L2|LINE|L2	90290	NM_021224	58499	Hs.370379	XM_005252117	ENSG00000148143	ZNF462	Zfp462	zinc finger protein 462	protein-coding
3727	chr11	28855634	28860244	+	0	NA	Intergenic	Intergenic	-358844	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
3527	chr1	151541912	151543574	+	0	NA	intron (NM_020127, intron 7 of 12)	MIRc|SINE|MIR	24471	NR_030280	693139		NR_030280		MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
2343	chr18	33195149	33199650	+	0	NA	Intergenic	Intergenic	25698	NR_039771	100616257		NR_039771		MIR3975	-	microRNA 3975	ncRNA
4889	chr7	134290043	134291801	+	0	NA	Intergenic	Intergenic	-40609	NM_001724	669	Hs.198365	XM_005250545	ENSG00000172331	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
4113	chr19	43435834	43439460	+	0	NA	intron (NM_001206650, intron 1 of 4)	intron (NM_001206650, intron 1 of 4)	3683	NR_073194	5676	Hs.709203	NM_001206650		PSG7	PSBG-7|PSG1|PSGGA	pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene)	protein-coding
2108	chr13	78081110	78084001	+	0	NA	Intergenic	Intergenic	-27254	NM_144777	8796	Hs.534699	XM_005266576	ENSG00000136155	SCEL	-	sciellin	protein-coding
3044	chr6	41677883	41685866	+	0	NA	intron (NM_001167827, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	20265	NM_001271945	7942	Hs.485360	XM_005249410	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
888	chr22	28064276	28068038	+	0	NA	Intergenic	L2a|LINE|L2	131329	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
3771	chr12	8008004	8010995	+	0	NA	intron (NM_001286237, intron 1 of 9)	intron (NM_001286237, intron 1 of 9)	16136	NM_153449	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
1011	chr4	41384608	41389328	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	24166	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
3743	chr11	94963318	94964544	+	0	NA	intron (NR_110295, intron 1 of 5)	CpG	315	NM_144665	143686	Hs.120633	NM_001271594	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
4515	chr4	100367607	100369344	+	0	NA	Intergenic	Intergenic	-11808	NM_000673	131	Hs.389	NM_000673	ENSG00000196344	ADH7	ADH4	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding
1754	chr1	185408001	185412598	+	0	NA	Intergenic	MER94B|DNA|hAT-Blackjack	-106128	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule-associated protein 1 light chain 3 beta pseudogene	pseudo
3683	chr10	91101802	91103188	+	0	NA	Intergenic	MamRep1527|LTR|LTR	10256	NM_001031683	3437	Hs.744072	NM_001031683	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G	interferon-induced protein with tetratricopeptide repeats 3	protein-coding
1161	chr5	54665721	54668592	+	0	NA	intron (NM_015360, intron 16 of 26)	intron (NM_015360, intron 16 of 26)	63580	NM_015360	23517	Hs.274531	NM_015360	ENSG00000039123	SKIV2L2	Dob1|KIAA0052|Mtr4|fSAP118	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding
2093	chr13	21606336	21610435	+	0	NA	intron (NM_014572, intron 2 of 7)	MIRc|SINE|MIR	27337	NM_014572	26524	Hs.78960	XM_005266342	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
1927	chr11	73576301	73581198	+	0	NA	Intergenic	AluSg|SINE|Alu	-8995	NM_001267806	80227	Hs.525017	XM_005274308	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase-associated factor 1	protein-coding
4779	chr6	52408308	52409140	+	0	NA	intron (NM_012288, intron 1 of 10)	L5|LINE|RTE	33138	NM_012288	9697	Hs.520182	NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
1380	chr7	23377777	23380005	+	0	NA	intron (NM_006547, intron 10 of 14)	intron (NM_006547, intron 10 of 14)	39951	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
2853	chr4	173913127	173920952	+	0	NA	intron (NM_001034845, intron 10 of 12)	intron (NM_001034845, intron 10 of 12)	-172865	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
3406	chrX	64862088	64865836	+	0	NA	Intergenic	MIRc|SINE|MIR	-23549	NM_002444	4478	Hs.87752	XM_005262269	ENSG00000147065	MSN	HEL70	moesin	protein-coding
990	chr3	183208097	183209619	+	0	NA	3' UTR (NM_130446, exon 7 of 7)	3' UTR (NM_130446, exon 7 of 7)	43419	NR_038301	100505687	Hs.551751	NR_038301	ENSG00000240024	LINC00888	-	long intergenic non-protein coding RNA 888	ncRNA
349	chr12	21971469	21973109	+	0	NA	intron (NM_020297, intron 29 of 37)	intron (NM_020297, intron 29 of 37)	-44534	NM_004982	3764	Hs.741642	XM_005253358	ENSG00000121361	KCNJ8	KIR6.1|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding
1442	chr7	137650257	137657385	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	15727	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
1614	chrY	20293765	20295310	+	0	NA	Intergenic	L1M3e|LINE|L1	-2798	NM_001002906	353515	Hs.632286	NM_001002906		XKRY2	XKRYP7	XK, Kell blood group complex subunit-related, Y-linked 2	protein-coding
2218	chr15	78666087	78668629	+	0	NA	Intergenic	Intergenic	34692	NM_004378	1381	Hs.346950	NM_004378	ENSG00000166426	CRABP1	CRABP|CRABP-I|CRABPI|RBP5	cellular retinoic acid binding protein 1	protein-coding
2316	chr17	77891668	77895067	+	0	NA	Intergenic	MIR3|SINE|MIR	31289	NM_001271844	125058	Hs.369819	XM_005257049	ENSG00000167291	TBC1D16	-	TBC1 domain family, member 16	protein-coding
4949	chr9	72120759	72121699	+	0	NA	intron (NM_001163, intron 2 of 12)	L1PA2|LINE|L1	166046	NM_001163	320	Hs.592974	XM_005251967	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
4772	chr6	41813661	41815237	+	0	NA	intron (NM_018561, intron 3 of 6)	L1MB2|LINE|L1	24926	NM_001286554	25862	Hs.665742	XM_005248991	ENSG00000164663	USP49	-	ubiquitin specific peptidase 49	protein-coding
1743	chr1	172222981	172226612	+	0	NA	intron (NM_015569, intron 15 of 20)	intron (NM_015569, intron 15 of 20)	-110821	NR_103486	100628315	Hs.584880	XR_241057		DNM3OS	DNM3-AS1|MIR199A2HG|RP5-1116C7.1	DNM3 opposite strand/antisense RNA	ncRNA
3970	chr15	92078579	92082085	+	0	NA	Intergenic	Intergenic	73763	NR_110106	101926928	Hs.638788	XR_243232	ENSG00000258551	RP11-661P17.1	-	uncharacterized LOC101926928	ncRNA
4770	chr6	41673024	41674441	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	28407	NM_001271945	7942	Hs.485360	XM_005249410	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
3364	chr9	86151942	86154664	+	0	NA	promoter-TSS (NM_174938)	promoter-TSS (NM_174938)	45	NM_001244959	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4109	chr19	42256925	42263337	+	0	NA	intron (NM_002483, intron 1 of 5)	L2a|LINE|L2	733	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)	protein-coding
3251	chr7	75572768	75576424	+	0	NA	intron (NM_000941, intron 1 of 15)	AluJb|SINE|Alu	1495	NR_002955	677801	Hs.689708	NR_002955	ENSG00000201643	SNORA14A	ACA14a	small nucleolar RNA, H/ACA box 14A	snoRNA
4401	chr3	46980584	46992993	+	0	NA	intron (NM_001277074, intron 1 of 6)	intron (NM_001277074, intron 1 of 6)	31203	NR_102269	151903	Hs.745081	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
3205	chr7	23395152	23399461	+	0	NA	intron (NM_006547, intron 5 of 14)	intron (NM_006547, intron 5 of 14)	58366	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
4995	chr9	140119969	140122271	+	0	NA	promoter-TSS (NM_001190228)	promoter-TSS (NM_001190228)	-898	NM_001190228	643596	Hs.730186	NM_001190228	ENSG00000233198	RNF224	-	ring finger protein 224	protein-coding
1383	chr7	68876872	68878832	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	184629	NR_108105	100507468	Hs.362492	XR_108828		LOC100507468	-	uncharacterized LOC100507468	ncRNA
137	chr1	229252504	229255197	+	0	NA	Intergenic	Intergenic	-152959	NM_001271998	5867	Hs.296169	NM_001271998	ENSG00000168118	RAB4A	HRES-1/RAB4|RAB4	RAB4A, member RAS oncogene family	protein-coding
1414	chr7	84329973	84332024	+	0	NA	Intergenic	Intergenic	169206	NR_110079	101927378	Hs.539042	XR_242309	ENSG00000235139	AC003984.1	-	uncharacterized LOC101927378	ncRNA
4504	chr3	160048561	160049303	+	0	NA	intron (NM_020800, intron 8 of 19)	Tigger7|DNA|TcMar-Tigger	52622	NM_001190242	57560	Hs.478095	XM_005247673	ENSG00000068885	IFT80	ATD2|WDR56	intraflagellar transport 80 homolog (Chlamydomonas)	protein-coding
666	chr2	217546400	217550094	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	12025	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
3794	chr12	47777284	47778163	+	0	NA	Intergenic	MIRb|SINE|MIR	-167497	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
860	chr20	43985684	43989906	+	0	NA	Intergenic	Intergenic	-2782	NM_001197129	90196	Hs.733183	XM_005260606	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding
1074	chr4	59141235	59143524	+	0	NA	Intergenic	Intergenic	-1165828	NM_001253835	3490	Hs.691061	NM_001253835	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
2308	chr17	63012939	63015846	+	0	NA	exon (NM_001282425, exon 3 of 4)	exon (NM_001282425, exon 3 of 4)	37500	NM_001282425	10672	Hs.515018	XM_005256956	ENSG00000120063	GNA13	G13	guanine nucleotide binding protein (G protein), alpha 13	protein-coding
4887	chr7	134047617	134051622	+	0	NA	Intergenic	Intergenic	-47792	NM_032826	84912	Hs.490181	NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4	protein-coding
3884	chr14	32983051	32984320	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	185206	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
1063	chr4	41576273	41579791	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-36757	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
1567	chrX	43832865	43834796	+	0	NA	promoter-TSS (NM_000266)	promoter-TSS (NM_000266)	-909	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
1776	chr1	208415897	208419204	+	0	NA	5' UTR (NM_025179, exon 1 of 32)	5' UTR (NM_025179, exon 1 of 32)	115	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
2565	chr2	234315943	234320345	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	21344	NM_003648	8527	Hs.471675	XM_005246107	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
2158	chr14	93428953	93432072	+	0	NA	intron (NM_001142593, intron 5 of 10)	intron (NM_001142593, intron 5 of 10)	41067	NM_001275	1113	Hs.150793	XM_005267292	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
3047	chr6	3521868	3524116	+	0	NA	Intergenic	Intergenic	-66199	NM_015482	63027	Hs.713588	XM_005249285	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
2576	chr20	31059941	31066019	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	8405	NM_080616	140688	Hs.729596	XM_005260282	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
4938	chr9	5230181	5232683	+	0	NA	promoter-TSS (NM_002195)	promoter-TSS (NM_002195)	13	NM_002195	3641	Hs.418506	NM_002195		INSL4	EPIL|PLACENTIN	insulin-like 4 (placenta)	protein-coding
2362	chr18	61403393	61405640	+	0	NA	Intergenic	Intergenic	-15765	NM_001040147	8710	Hs.742388	NM_001040147	ENSG00000166396	SERPINB7	MEGSIN|PPKN|TP55	serpin peptidase inhibitor, clade B (ovalbumin), member 7	protein-coding
3287	chr7	141394341	141405514	+	0	NA	intron (NM_001080392, intron 1 of 8)	intron (NM_001080392, intron 1 of 8)	2026	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
3829	chr12	102932561	102934383	+	0	NA	Intergenic	MIR|SINE|MIR	-59094	NM_001111283	3479	Hs.160562	XM_005268835	ENSG00000017427	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
2796	chr3	119877033	119880537	+	0	NA	Intergenic	Intergenic	-65521	NM_002093	2932	Hs.445733	NM_001146156	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
1601	chrX	127529753	127531947	+	0	NA	Intergenic	Intergenic	-344468	NM_138289	139741	Hs.680125	NM_138289	ENSG00000123165	ACTRT1	AIP1|ARIP1|ARPT1|HSD27	actin-related protein T1	protein-coding
323	chr12	68140875	68143166	+	0	NA	Intergenic	MIRb|SINE|MIR	-18765	NR_110063	101927901	Hs.369609	XR_245997	ENSG00000255970	RP11-43N5.1	-	uncharacterized LOC101927901	ncRNA
1834	chr10	76348143	76350597	+	0	NA	intron (NM_006721, intron 8 of 10)	intron (NM_006721, intron 8 of 10)	-236801	NM_001256469	23522	Hs.740873	XM_005269664	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
2142	chr14	59103873	59105825	+	0	NA	promoter-TSS (NR_046095)	promoter-TSS (NR_046095)	92	NM_016651	51339	Hs.714204	NM_001079520	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding
545	chr16	53914873	53916515	+	0	NA	intron (NM_001080432, intron 6 of 8)	MER113|DNA|hAT-Charlie	-157611	NR_103838	100505692	Hs.664629	NR_103838		FTO-IT1	-	FTO intronic transcript 1 (non-protein coding)	ncRNA
2467	chr2	56674259	56678458	+	0	NA	Intergenic	Intergenic	265100	NM_001080433	114800	Hs.117136	XM_005264122	ENSG00000055813	CCDC85A	-	coiled-coil domain containing 85A	protein-coding
2733	chr3	16520888	16525914	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	31821	NM_015150	23180	Hs.98910	XM_005264985	ENSG00000131378	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
187	chr10	67276985	67279984	+	0	NA	Intergenic	L1MA3|LINE|L1	693199	NR_001446	305	Hs.591361	NR_001446		ANXA2P3	ANX2L3|ANX2P3|LIP2|LPC2C	annexin A2 pseudogene 3	pseudo
4625	chr5	64777031	64779560	+	0	NA	promoter-TSS (NM_197941)	promoter-TSS (NM_197941)	-591	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif, 6	protein-coding
2326	chr18	8175636	8178850	+	0	NA	intron (NM_002845, intron 14 of 30)	intron (NM_002845, intron 14 of 30)	189789	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	RP11-789C17.3	-	uncharacterized LOC100192426	ncRNA
1283	chr6	21927662	21930355	+	0	NA	intron (NR_015410, intron 5 of 11)	intron (NR_015410, intron 5 of 11)	218414	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
3089	chr6	4318887	4322347	+	0	NA	Intergenic	Intergenic	184311	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	RP3-400B16.1	-	uncharacterized LOC100507506	ncRNA
212	chr10	102455856	102457877	+	0	NA	Intergenic	Intergenic	-48602	NM_003988	5076	Hs.155644	XM_005269871	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
3384	chr9	123375931	123384362	+	0	NA	intron (NM_001080497, intron 3 of 5)	L2|LINE|L2	-37698	NR_073557	55755	Hs.269560	NM_001011649	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
2436	chr2	19172022	19173837	+	0	NA	Intergenic	Intergenic	-375261	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
1331	chr6	112552646	112553723	+	0	NA	intron (NM_001105207, intron 2 of 38)	intron (NM_001105207, intron 2 of 38)	22733	NM_001105206	3910	Hs.654572	XM_005266983	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin, alpha 4	protein-coding
4019	chr17	60881647	60883312	+	0	NA	intron (NM_001288780, intron 1 of 10)	intron (NM_001288780, intron 1 of 10)	1535	NM_001100875	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
2383	chr19	43263877	43268149	+	0	NA	intron (NM_001130168, intron 1 of 4)	intron (NM_001130168, intron 1 of 4)	3818	NM_001130168	440533	Hs.466843	NM_001130167	ENSG00000124467	PSG8	PSG1	pregnancy specific beta-1-glycoprotein 8	protein-coding
1305	chr6	51946138	51947167	+	0	NA	intron (NM_170724, intron 4 of 60)	intron (NM_170724, intron 4 of 60)	5771	NM_170724	5314	Hs.662050	NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
961	chr3	111310335	111311804	+	0	NA	TTS (NM_024508)	TTS (NM_024508)	3113	NM_024508	79413	Hs.136912	NM_024508	ENSG00000177494	ZBED2	-	zinc finger, BED-type containing 2	protein-coding
4539	chr4	41401515	41402275	+	0	NA	intron (NM_014988, intron 1 of 26)	AluSc|SINE|Alu	39093	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2686	chr22	18392084	18394771	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-3775	NM_001136004	57553	Hs.528024	XM_005261257	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
1662	chr1	208355114	208359267	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	60475	NM_025179	5362	Hs.497626	XM_005273164	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
2882	chr4	85503418	85505468	+	0	NA	5' UTR (NM_001263, exon 1 of 13)	5' UTR (NM_001263, exon 1 of 13)	386	NM_001263	1040	Hs.708641	XM_005262687	ENSG00000163624	CDS1	CDS	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1	protein-coding
3234	chr7	30508120	30513717	+	0	NA	intron (NM_006092, intron 1 of 13)	intron (NM_006092, intron 1 of 13)	7475	NM_006092	10392	Hs.405153	XM_005249568	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide-binding oligomerization domain containing 1	protein-coding
574	chr17	11521813	11523273	+	0	NA	intron (NM_001372, intron 5 of 68)	intron (NM_001372, intron 5 of 68)	20795	NM_001372	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	dynein, axonemal, heavy chain 9	protein-coding
660	chr2	87538760	87540610	+	0	NA	Intergenic	Intergenic	-215289	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	AC133644.1|C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
3397	chr9	137532432	137539409	+	0	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	2269	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	collagen, type V, alpha 1	protein-coding
977	chr3	132506748	132508339	+	0	NA	intron (NR_002811, intron 3 of 10)	intron (NR_002811, intron 3 of 10)	-66240	NR_037804	100532724	Hs.511991	NR_037804		NPHP3-ACAD11	-	NPHP3-ACAD11 readthrough (NMD candidate)	ncRNA
4916	chr8	101426615	101430165	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	33399	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
566	chr17	60240848	60244340	+	0	NA	Intergenic	Intergenic	-99951	NM_005121	9969	Hs.282678	XM_005257898	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
3928	chr15	38856141	38857602	+	0	NA	5' UTR (NM_001128602, exon 1 of 16)	5' UTR (NM_001128602, exon 1 of 16)	136	NM_005739	10125	Hs.591127	XM_005254113	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
4067	chr18	9054617	9056473	+	0	NA	Intergenic	Intergenic	-47083	NM_021074	4729	Hs.464572	XM_005258106	ENSG00000178127	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
2765	chr3	79843967	79846036	+	0	NA	Intergenic	Intergenic	-27942	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
2299	chr17	40623213	40627556	+	0	NA	intron (NM_005177, intron 5 of 20)	L2c|LINE|L2	14522	NM_001130020	535	Hs.463074	XM_005257459	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	ATPase, H+ transporting, lysosomal V0 subunit a1	protein-coding
108	chr1	183703199	183706446	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	-82374	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
2820	chr3	185190550	185192937	+	0	NA	intron (NM_004721, intron 11 of 13)	intron (NM_004721, intron 11 of 13)	25102	NM_080652	90407	Hs.692209	NM_080652	ENSG00000163900	TMEM41A	2900010K02Rik	transmembrane protein 41A	protein-coding
604	chr18	11834355	11836535	+	0	NA	intron (NM_001261443, intron 6 of 12)	FLAM_A|SINE|Alu	-15944	NM_020412	57132	Hs.656244	NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
4940	chr9	33171683	33173443	+	0	NA	intron (NR_108108, intron 1 of 3)	LTR45C|LTR|ERV1	4706	NR_108108	101929639	Hs.545818	XR_242540		RP11-326F20.5	-	uncharacterized LOC101929639	ncRNA
477	chr14	79835425	79837108	+	0	NA	intron (NM_001272020, intron 1 of 5)	Plat_L3|LINE|CR1	90584	NR_073546	9369	Hs.368307	XM_005268218		NRXN3	C14orf60	neurexin 3	protein-coding
4880	chr7	110173847	110175439	+	0	NA	Intergenic	Intergenic	-556419	NM_001099658	54674	Hs.3781	NM_001099658	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
1338	chr6	117270614	117272627	+	0	NA	Intergenic	Intergenic	73244	NM_173560	222546	Hs.352276	NM_173560	ENSG00000185002	RFX6	MTFS|RFXDC1|dJ955L16.1	regulatory factor X, 6	protein-coding
2623	chr20	16454021	16459112	+	0	NA	intron (NM_001199865, intron 12 of 24)	intron (NM_001199865, intron 12 of 24)	97513	NM_024704	55614	Hs.101774	XM_005260750	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
330	chr12	8309106	8311283	+	0	NA	Intergenic	Intergenic	-14956	NM_001004328	440077	Hs.438536	XM_005253377	ENSG00000196946	ZNF705A	-	zinc finger protein 705A	protein-coding
360	chr12	68924338	68927219	+	0	NA	Intergenic	AluSz|SINE|Alu	-78841	NM_001251922	5908	Hs.369920	XM_005269053	ENSG00000127314	RAP1B	K-REV|RAL1B	RAP1B, member of RAS oncogene family	protein-coding
1857	chr10	20103849	20108309	+	0	NA	exon (NM_032812, exon 1 of 14)	exon (NM_032812, exon 1 of 14)	707	NM_032812	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
3416	chrX	39999355	40001892	+	0	NA	intron (NM_001123383, intron 1 of 14)	intron (NM_001123383, intron 1 of 14)	35959	NM_001123383	54880	Hs.659681	XM_005272616	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
3160	chr6	112535439	112540567	+	0	NA	intron (NM_001105207, intron 2 of 38)	intron (NM_001105207, intron 2 of 38)	37914	NM_001105206	3910	Hs.654572	XM_005266983	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin, alpha 4	protein-coding
3279	chr7	130918511	130922316	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	-92182	NM_013255	4289	Hs.44693	XM_005250355	ENSG00000128585	MKLN1	TWA2	muskelin 1, intracellular mediator containing kelch motifs	protein-coding
2321	chr18	45546770	45551644	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-91690	NM_001003652	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
3377	chr9	110399513	110403115	+	0	NA	Intergenic	Intergenic	-149267	NM_004235	9314	Hs.376206	XM_005252305	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
1076	chr4	66508564	66512934	+	0	NA	intron (NM_001281767, intron 1 of 16)	intron (NM_001281767, intron 1 of 16)	-24930	NR_034138	100144602	Hs.201854	NR_034138	ENSG00000250846	RP11-807H7.1	-	uncharacterized LOC100144602	ncRNA
3082	chr6	3417848	3421568	+	0	NA	intron (NM_001286456, intron 1 of 3)	intron (NM_001286456, intron 1 of 3)	25539	NR_104448	63027	Hs.713588	XM_005249285	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
766	chr2	159683739	159687634	+	0	NA	Intergenic	Intergenic	33857	NM_001017920	92196	Hs.59761	XM_005246949	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
4595	chr5	71219950	71222292	+	0	NA	Intergenic	L3|LINE|CR1	-181997	NM_005909	4131	Hs.335079	XM_005248507	ENSG00000131711	MAP1B	FUTSCH|MAP5	microtubule-associated protein 1B	protein-coding
449	chr14	25330003	25331905	+	0	NA	intron (NM_014178, intron 2 of 5)	intron (NM_014178, intron 2 of 5)	188141	NM_014178	29091	Hs.508958	XM_005267556	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
1574	chrX	65091493	65092722	+	0	NA	Intergenic	L1PBa|LINE|L1	-146605	NR_029637	407008		NR_029637	ENSG00000207939	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
1579	chrX	76126488	76127801	+	0	NA	Intergenic	L1PA16|LINE|L1	12641	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
3506	chr1	65623926	65626230	+	0	NA	intron (NM_001005353, intron 2 of 5)	AluJb|SINE|Alu	11228	NM_013410	205	Hs.10862	NM_001005353	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
4587	chr4	173919598	173920605	+	0	NA	intron (NM_001034845, intron 10 of 12)	LTR41|LTR|ERVL	-169803	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
4484	chr3	124277735	124278783	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-25247	NM_007064	8997	Hs.8004	NM_001024660	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
682	chr2	12727806	12728973	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-128609	NR_027303	28951	Hs.467751	NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
353	chr12	32719395	32722769	+	0	NA	intron (NM_139241, intron 2 of 16)	intron (NM_139241, intron 2 of 16)	66041	NM_139241	121512	Hs.117835	XM_005253304	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
2971	chr5	39437122	39438339	+	0	NA	Intergenic	Intergenic	-12395	NM_001343	1601	Hs.696631	XM_005248260	ENSG00000153071	DAB2	DOC-2|DOC2	Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)	protein-coding
375	chr12	79321785	79323331	+	0	NA	intron (NM_005639, intron 1 of 10)	MER44C|DNA|TcMar-Tigger	64109	NM_005639	6857	Hs.310545	XM_005269113	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
3633	chr10	79657770	79659821	+	0	NA	intron (NM_004747, intron 1 of 31)	intron (NM_004747, intron 1 of 31)	27553	NM_004747	9231	Hs.652690	XM_005270276	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
2989	chr5	90277120	90280941	+	0	NA	intron (NR_003149, intron 84 of 89)	intron (NR_003149, intron 84 of 89)	331189	NR_103548	100505994	Hs.745403	NR_103548	ENSG00000248323	LUCAT1	RP11-213H15.3|RP11-213H15.4|SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
2409	chr2	72496347	72503897	+	0	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-125131	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
2833	chr4	24657092	24662059	+	0	NA	Intergenic	AluSg|SINE|Alu	-73391	NM_001358	1665	Hs.696074	NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p	DEAH (Asp-Glu-Ala-His) box helicase 15	protein-coding
3944	chr15	64925416	64928793	+	0	NA	intron (NM_015042, intron 2 of 8)	intron (NM_015042, intron 2 of 8)	68358	NM_002537	4947	Hs.744924	NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
4189	chr2	69135249	69136692	+	0	NA	Intergenic	Intergenic	-37321	NM_014482	27302	Hs.158317	NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
3914	chr15	69859662	69861732	+	0	NA	intron (NR_026979, intron 4 of 4)	MIRb|SINE|MIR	6638	NR_026979	145837	Hs.737088	XR_243079		RP11-279F6.1	-	uncharacterized LOC145837	ncRNA
3692	chr10	95766429	95767378	+	0	NA	intron (NM_016341, intron 1 of 32)	intron (NM_016341, intron 1 of 32)	13157	NM_016341	51196	Hs.655033	XM_005269880	ENSG00000138193	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
3726	chr11	28722865	28724735	+	0	NA	Intergenic	Intergenic	-224705	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
501	chr15	32973863	32976944	+	0	NA	intron (NM_003020, intron 3 of 5)	intron (NM_003020, intron 3 of 5)	-34802	NM_001191323	26585	Hs.40098	XM_005254301	ENSG00000166923	GREM1	CKTSF1B1|DAND2|DRM|GREMLIN|IHG-2	gremlin 1, DAN family BMP antagonist	protein-coding
2944	chr5	123043114	123045829	+	0	NA	Intergenic	Intergenic	163360	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
3144	chr6	76076887	76080318	+	0	NA	intron (NM_015687, intron 2 of 5)	L2c|LINE|L2	83872	NR_040081	100506804	Hs.743708	NR_040081		RP1-234P15.4	-	uncharacterized LOC100506804	ncRNA
2650	chr20	56382880	56387140	+	0	NA	Intergenic	Intergenic	-85440	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	-	microRNA 4532	ncRNA
155	chr10	86884341	86885299	+	0	NA	Intergenic	Intergenic	-452668	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
387	chr12	92951590	92953143	+	0	NA	Intergenic	Intergenic	-130442	NM_001025232	574016	Hs.551199	NM_001025232	ENSG00000205057	CLLU1OS	-	chronic lymphocytic leukemia up-regulated 1 opposite strand	protein-coding
1913	chr10	120759602	120761951	+	0	NA	Intergenic	AluSx|SINE|Alu	-28452	NM_199461	340719	Hs.591918	NM_001009553	ENSG00000188613	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
626	chr18	53456553	53458622	+	0	NA	Intergenic	Intergenic	-154399	NM_001243226	6925	Hs.605153	XM_005266738	ENSG00000196628	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
4944	chr9	35113943	35117630	+	0	NA	intron (NM_025182, intron 1 of 8)	CpG	107	NM_025182	80256	Hs.301696	XM_005251588	ENSG00000005238	FAM214B	KIAA1539|P1.11659_5|RP11-182N22.6|bA182N22.6	family with sequence similarity 214, member B	protein-coding
257	chr11	28777429	28781774	+	0	NA	Intergenic	Intergenic	-280506	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
951	chr3	66935116	66936720	+	0	NA	Intergenic	Intergenic	-112809	NM_032505	84541	Hs.116665	XM_005264771	ENSG00000163376	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
4750	chr6	22112252	22115433	+	0	NA	intron (NR_015410, intron 9 of 11)	MIRc|SINE|MIR	33580	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
85	chr1	152473203	152476322	+	0	NA	Intergenic	Intergenic	-8558	NM_178438	254910	Hs.516410	NM_178438	ENSG00000186207	LCE5A	LEP18|SPRL5A	late cornified envelope 5A	protein-coding
809	chr2	243015878	243019051	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	-13380	NR_024437	728323	Hs.471887	XR_241435		LOC728323	-	uncharacterized LOC728323	ncRNA
1156	chr5	52292156	52294598	+	0	NA	intron (NR_073107, intron 1 of 28)	intron (NR_073107, intron 1 of 28)	8221	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	protein-coding
2200	chr15	62404114	62406313	+	0	NA	Intergenic	MIRb|SINE|MIR	46037	NM_207322	145741	Hs.202656	NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
3057	chr6	40924629	40929842	+	0	NA	Intergenic	Intergenic	79703	NM_173561	222643	Hs.158357	NM_173561	ENSG00000124602	UNC5CL	MUXA|ZUD	unc-5 homolog C (C. elegans)-like	protein-coding
3614	chr1	240553888	240555141	+	0	NA	intron (NM_020066, intron 14 of 17)	intron (NM_020066, intron 14 of 17)	220948	NM_022469	64388	Hs.98206	XM_005273226	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
736	chr2	76499986	76502162	+	0	NA	Intergenic	Intergenic	-562963	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
3812	chr12	74786553	74787380	+	0	NA	Intergenic	Intergenic	-100555	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
539	chr16	9638861	9640864	+	0	NA	Intergenic	MIRb|SINE|MIR	18386	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA mir-7641-2	ncRNA
2847	chr4	143009865	143019213	+	0	NA	intron (NM_001101669, intron 23 of 25)	MLT1G|LTR|ERVL-MaLR	456790	NM_000585	3600	Hs.602618	NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
5023	chrX	153310523	153311196	+	0	NA	intron (NM_001110792, intron 1 of 2)	intron (NM_001110792, intron 1 of 2)	-25419	NR_031757	100313781		NR_031757	ENSG00000211524	MIR718	hsa-mir-718	microRNA 718	ncRNA
3233	chr7	30497151	30501635	+	0	NA	intron (NM_006092, intron 2 of 13)	MER113|DNA|hAT-Charlie	19000	NM_006092	10392	Hs.405153	XM_005249568	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide-binding oligomerization domain containing 1	protein-coding
3339	chr9	692671	697479	+	0	NA	intron (NM_001256876, intron 6 of 15)	intron (NM_001256876, intron 6 of 15)	-11731	NM_153186	23189	Hs.306764	XM_005251410	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
5012	chrX	92927921	92929085	+	0	NA	promoter-TSS (NM_001171111)	promoter-TSS (NM_001171111)	179	NM_004538	4675	Hs.732006	NM_004538	ENSG00000186310	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
4369	chr21	39507665	39509089	+	0	NA	intron (NR_026839, intron 2 of 2)	intron (NR_026839, intron 2 of 2)	14832	NR_026839	84677	Hs.733345	NM_032589	ENSG00000198054	DSCR8	C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2	Down syndrome critical region gene 8	ncRNA
520	chr15	74092224	74094400	+	0	NA	Intergenic	Intergenic	-49496	NM_001039614	388135	Hs.213493	XM_005254369	ENSG00000205363	C15orf59	-	chromosome 15 open reading frame 59	protein-coding
1698	chr1	54421488	54424238	+	0	NA	intron (NM_052940, intron 2 of 7)	intron (NM_052940, intron 2 of 7)	10864	NM_001256409	115353	Hs.40094	XM_005270426	ENSG00000116212	LRRC42	dJ167A19.4	leucine rich repeat containing 42	protein-coding
2865	chr4	26788668	26790654	+	0	NA	Intergenic	Intergenic	-72652	NM_001169117	57620	Hs.744950	XM_005248181	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
4533	chr4	24212175	24213298	+	0	NA	Intergenic	L2b|LINE|L2	309177	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
3820	chr12	88204018	88208924	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-27983	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
4617	chr5	33401411	33402188	+	0	NA	Intergenic	Intergenic	-39003	NM_001258437	6897	Hs.481860	NM_001258437	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
57	chr1	85600146	85602061	+	0	NA	Intergenic	L2a|LINE|L2	1626	NR_039619	100616481		NR_039619	ENSG00000266110	MIR4423	-	microRNA 4423	ncRNA
2642	chr20	44406830	44409642	+	0	NA	intron (NM_080614, intron 4 of 6)	intron (NM_080614, intron 4 of 6)	12311	NM_080614	140686	Hs.419126	NM_080614	ENSG00000124116	WFDC3	WAP14|dJ447F3.3	WAP four-disulfide core domain 3	protein-coding
2354	chr18	47833489	47835596	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-19850	NM_014593	30827	Hs.180933	NM_001101654	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
4714	chr6	125319570	125321612	+	0	NA	intron (NR_104440, intron 2 of 6)	intron (NR_104440, intron 2 of 6)	16081	NR_104440	154214	Hs.656715	XM_005266832	ENSG00000146373	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
3479	chr1	21590773	21592862	+	0	NA	intron (NM_001113347, intron 2 of 16)	AluSx1|SINE|Alu	14366	NM_001113347	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
3790	chr12	26278656	26279846	+	0	NA	Intergenic	CpG	-1248	NM_030762	79365	Hs.177841	XM_005253481	ENSG00000123095	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	basic helix-loop-helix family, member e41	protein-coding
3660	chr10	37823034	37826076	+	0	NA	Intergenic	Intergenic	67304	NM_001190489	100288485	Hs.727092	NM_001190489	ENSG00000256892	MTRNR2L7	HN7	MT-RNR2-like 7	protein-coding
3435	chrX	132548140	132550481	+	0	NA	promoter-TSS (NM_001448)	promoter-TSS (NM_001448)	-105	NM_001448	2239	Hs.58367	XM_005262398		GPC4	K-glypican	glypican 4	protein-coding
175	chr10	21385417	21387801	+	0	NA	intron (NM_001173484, intron 2 of 6)	intron (NM_001173484, intron 2 of 6)	48879	NM_001010896	387638	Hs.664110	NM_001010896	ENSG00000204683	C10orf113	bA165O3.1	chromosome 10 open reading frame 113	protein-coding
584	chr17	44275655	44278122	+	0	NA	intron (NM_001193465, intron 2 of 15).2	intron (NM_001193465, intron 2 of 15).2	5949	NR_034172	644246	Hs.644600	NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
3307	chr8	71476454	71478887	+	0	NA	Intergenic	L1PB2|LINE|L1	43024	NM_014294	23471	Hs.491988	XM_005251188	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
35	chr1	21628504	21630490	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	9714	NR_038404	100506801	Hs.663049	NR_038404	ENSG00000231105	RP5-1071N3.1	-	uncharacterized LOC100506801	ncRNA
2453	chr2	36659099	36662556	+	0	NA	intron (NM_016441, intron 2 of 16)	MER5B|DNA|hAT-Charlie	77457	NM_016441	51232	Hs.699247	XM_005264357	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
1882	chr10	73685408	73689852	+	0	NA	Intergenic	AluJr|SINE|Alu	-36490	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
1421	chr7	100616154	100620140	+	0	NA	intron (NM_001164462, intron 1 of 11)	L1MEg|LINE|L1	5243	NM_001164462	10071	Hs.489355	NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
4033	chr17	20108863	20111034	+	0	NA	intron (NM_001033554, intron 2 of 5)	L1ME4a|LINE|L1	50641	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
665	chr2	191332135	191335672	+	0	NA	intron (NM_017694, intron 3 of 7)	intron (NM_017694, intron 3 of 7)	60822	NM_017694	54842	Hs.744117	XM_005246654	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
2827	chr4	150992401	150995646	+	0	NA	Intergenic	Intergenic	-5403	NM_001040260	166614	Hs.591683	XM_005262785	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
3021	chr5	138178943	138182196	+	0	NA	intron (NM_001903, intron 7 of 17)	intron (NM_001903, intron 7 of 17)	30488	NM_015564	26045	Hs.656653	XM_005271953	ENSG00000146006	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
1476	chr8	107618645	107620193	+	0	NA	intron (NM_001198533, intron 3 of 16)	intron (NM_001198533, intron 3 of 16)	-50617	NM_181354	55074	Hs.701892	XM_005250993	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
2758	chr3	69913818	69919266	+	0	NA	intron (NM_198177, intron 1 of 9)	intron (NM_198177, intron 1 of 9)	1167	NM_198177	4286	Hs.618266	XM_005264754	ENSG00000187098	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
1207	chr5	143830074	143832444	+	0	NA	intron (NM_020768, intron 3 of 3)	intron (NM_020768, intron 3 of 3)	280822	NM_020768	57528	Hs.661870	XM_005268492		KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
2641	chr20	43881736	43884689	+	0	NA	promoter-TSS (NM_003064)	promoter-TSS (NM_003064)	-7	NM_003064	6590	Hs.517070	NM_003064	ENSG00000124107	SLPI	ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4	secretory leukocyte peptidase inhibitor	protein-coding
2670	chr21	40281350	40286114	+	0	NA	Intergenic	L3|LINE|CR1	54269	NR_109926	101928398	Hs.122403	XR_244310		LOC101928398	-	uncharacterized LOC101928398	ncRNA
3007	chr5	127148161	127150658	+	0	NA	Intergenic	Intergenic	160702	NM_001127385	613212	Hs.66194	NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
904	chr3	69713309	69715320	+	0	NA	Intergenic	Intergenic	-74272	NM_198159	4286	Hs.618266	XM_005264754	ENSG00000187098	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
930	chr3	27241676	27243092	+	0	NA	Intergenic	L2a|LINE|L2	168528	NM_199347	152110	Hs.743887	XM_005264896	ENSG00000163491	NEK10	-	NIMA-related kinase 10	protein-coding
3848	chr12	131733690	131737849	+	0	NA	Intergenic	Intergenic	86213	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	RP11-638F5.1	-	uncharacterized LOC116437	ncRNA
2972	chr5	52713391	52716593	+	0	NA	Intergenic	Intergenic	-61272	NM_006350	10468	Hs.9914	XM_005248400	ENSG00000134363	FST	FS	follistatin	protein-coding
648	chr19	43586419	43592223	+	0	NA	Intergenic	MER54B|LTR|ERVL	-2428	NM_031246	5670	Hs.709200	NM_031246	ENSG00000242221	PSG2	CEA|PSBG2|PSG1	pregnancy specific beta-1-glycoprotein 2	protein-coding
2006	chr12	74791820	74799229	+	0	NA	Intergenic	Intergenic	-109113	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
2245	chr16	9562624	9564345	+	0	NA	Intergenic	Intergenic	94764	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA mir-7641-2	ncRNA
3178	chr6	138482184	138484426	+	0	NA	exon (NM_020340, exon 1 of 34)	exon (NM_020340, exon 1 of 34)	252	NM_020340	57221	Hs.194408	NM_020340	ENSG00000112379	KIAA1244	A7322|ARFGEF3|BIG3|C6orf92|PPP1R33|dJ171N11.1	KIAA1244	protein-coding
4453	chr3	102697843	102700138	+	0	NA	Intergenic	LTR25|LTR|ERV1	545131	NM_175056	131368	Hs.352213	XM_005247110	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
2130	chr14	31909221	31912514	+	0	NA	intron (NR_110045, intron 2 of 3)	intron (NR_110045, intron 2 of 3)	15813	NM_080664	112487	Hs.116014	NM_080664	ENSG00000129480	DTD2	C14orf126	D-tyrosyl-tRNA deacylase 2 (putative)	protein-coding
4973	chr9	107825746	107828622	+	0	NA	Intergenic	Intergenic	-136657	NM_005502	19	Hs.659274	XM_005251773	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
1028	chr4	16419836	16421248	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	192256	NR_027697	202020	Hs.445315	NM_152684	ENSG00000263327	TAPT1-AS1	RP11-783N5.1	TAPT1 antisense RNA 1 (head to head)	ncRNA
198	chr10	86768237	86769307	+	0	NA	Intergenic	Intergenic	-568716	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
1589	chrX	81987986	81990702	+	0	NA	Intergenic	L3|LINE|CR1	-773925	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
2550	chr2	210232568	210234573	+	0	NA	Intergenic	Intergenic	-55201	NM_001039538	4133	Hs.368281	XM_005246554	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
1059	chr4	41539223	41549419	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-70468	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2683	chr22	37571431	37587310	+	0	NA	intron (NM_182486, intron 2 of 3)	MIRc|SINE|MIR	4960	NM_182486	114904	Hs.22011	XM_005261325	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
3713	chr11	1591394	1596248	+	0	NA	promoter-TSS (NM_004420)	promoter-TSS (NM_004420)	-150	NR_021489	338651	Hs.673618	NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
3349	chr9	36100451	36103924	+	0	NA	exon (NM_021111, exon 12 of 21)	exon (NM_021111, exon 12 of 21)	-34346	NR_104641	152007	Hs.493819	XM_005251369	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
913	chr3	194493068	194495362	+	0	NA	intron (NR_037891, intron 3 of 3)	intron (NR_037891, intron 3 of 3)	65065	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	AC090505.6	-	uncharacterized LOC100507391	ncRNA
3644	chr10	12621533	12623092	+	0	NA	intron (NM_020397, intron 2 of 9)	intron (NM_020397, intron 2 of 9)	1560	NR_039700	100616151		NR_039700		MIR4480	-	microRNA 4480	ncRNA
2019	chr12	1627208	1629804	+	0	NA	Intergenic	Intergenic	18849	NR_028415	100292680	Hs.391695	NR_028415		LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
3983	chr16	30458296	30460247	+	0	NA	Intergenic	AluSc|SINE|Alu	-1975	NM_012248	22928	Hs.118725	XM_005255171	ENSG00000179918	SEPHS2	SPS2|SPS2b	selenophosphate synthetase 2	protein-coding
4313	chr20	8580735	8582588	+	0	NA	intron (NM_182734, intron 3 of 32)	L1PA2|LINE|L1	-468040	NM_001172646	5332	Hs.472101	XM_005260722	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
361	chr12	69292254	69293826	+	0	NA	intron (NM_001005502, intron 2 of 8)	intron (NM_001005502, intron 2 of 8)	33939	NM_001005502	1368	Hs.654387	XM_005268653	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding
202	chr10	90448617	90451051	+	0	NA	Intergenic	L1M1|LINE|L1	25688	NM_001198828	8513	Hs.523130	NM_001198828	ENSG00000182333	LIPF	GL|HGL|HLAL	lipase, gastric	protein-coding
4436	chr3	62859374	62860471	+	0	NA	intron (NM_003716, intron 1 of 29)	CpG	1142	NM_003716	8618	Hs.654933	XM_005265519	ENSG00000163618	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
2468	chr2	59615185	59617765	+	0	NA	Intergenic	Intergenic	171632	NR_110219	101927285	Hs.570209	XR_245009	ENSG00000222030	AC007131.1	-	uncharacterized LOC101927285	ncRNA
3282	chr7	134570048	134572326	+	0	NA	intron (NM_033138, intron 3 of 14)	intron (NM_033138, intron 3 of 14)	-4964	NM_033139	800	Hs.490203	XM_005250609	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
4801	chr6	119861476	119863335	+	0	NA	Intergenic	L1MEf|LINE|L1	-49938	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
1819	chr10	18969676	18973308	+	0	NA	Intergenic	L1ME1|LINE|L1	23179	NM_178815	221079	Hs.594569	XM_005252400	ENSG00000165997	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
2183	chr15	33118900	33122808	+	0	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-109788	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
1459	chr8	32921490	32923972	+	0	NA	Intergenic	Intergenic	343380	NM_001159996	3084	Hs.668810	XM_005273485	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|NDF|SMDF	neuregulin 1	protein-coding
1984	chr12	88078965	88083485	+	0	NA	Intergenic	AluJo|SINE|Alu	97263	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
307	chr11	126203128	126205800	+	0	NA	intron (NM_014026, intron 3 of 5)	AluSq2|SINE|Alu	21018	NR_033839	399972	Hs.585206	NR_033839		ST3GAL4-AS1	DCPS-AS1	ST3GAL4 antisense RNA 1 (head to head)	ncRNA
3472	chr1	7461232	7463960	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-368733	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
154	chr10	85523744	85526083	+	0	NA	Intergenic	Intergenic	-374272	NM_014394	27069	Hs.352656	XM_005269699	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
1463	chr8	37013545	37016874	+	0	NA	Intergenic	Intergenic	373367	NM_001031836	157855	Hs.13861	XM_005273423	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
1467	chr8	55280095	55281290	+	0	NA	Intergenic	Intergenic	-89803	NM_022454	64321	Hs.98367	NM_022454	ENSG00000164736	SOX17	VUR3	SRY (sex determining region Y)-box 17	protein-coding
2041	chr12	43308539	43311634	+	0	NA	Intergenic	L2|LINE|L2	-269786	NR_110042	101927058	Hs.434238	XR_245972	ENSG00000257510	RP11-609L23.1	-	uncharacterized LOC101927058	ncRNA
4548	chr4	74474289	74475699	+	0	NA	intron (NM_201431, intron 2 of 10)	intron (NM_201431, intron 2 of 10)	11293	NM_177532	166824	Hs.529677	NM_001270391	ENSG00000169435	RASSF6	-	Ras association (RalGDS/AF-6) domain family member 6	protein-coding
4324	chr20	17855269	17857099	+	0	NA	Intergenic	Intergenic	87405	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
704	chr2	33708356	33710770	+	0	NA	intron (NM_001139488, intron 1 of 17)	intron (NM_001139488, intron 1 of 17)	8242	NM_001139488	25780	Hs.143674	XM_005264246	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
2801	chr3	124277020	124279417	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-25288	NM_007064	8997	Hs.8004	NM_001024660	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
1462	chr8	36999690	37002510	+	0	NA	Intergenic	Intergenic	359258	NM_001031836	157855	Hs.13861	XM_005273423	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
681	chr2	6986552	6988061	+	0	NA	intron (NM_001256478, intron 3 of 3)	LTR25|LTR|ERV1	18644	NM_207315	129607	Hs.7155	NM_001256477	ENSG00000134326	CMPK2	TMPK2|TYKi|UMP-CMPK2	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
4752	chr6	22236357	22237905	+	0	NA	Intergenic	Intergenic	60599	NM_000948	5617	Hs.735971	NM_000948	ENSG00000172179	PRL	-	prolactin	protein-coding
4478	chr3	113254901	113256162	+	0	NA	intron (NM_017699, intron 1 of 24)	intron (NM_017699, intron 1 of 24)	4313	NM_017699	54847	Hs.591291	XM_005247557	ENSG00000072858	SIDT1	B830021E24Rik|SID-1|SID1	SID1 transmembrane family, member 1	protein-coding
1029	chr4	19777005	19779145	+	0	NA	Intergenic	Intergenic	-477112	NM_001289135	9353	Hs.29802	XM_005248211	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
3062	chr6	82852487	82855869	+	0	NA	Intergenic	Intergenic	103270	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI|RP1-93K22.1	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
5	chr1	48019717	48021863	+	0	NA	Intergenic	Intergenic	119101	NM_004474	2306	Hs.166188	NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
2715	chr3	111620412	111627115	+	0	NA	intron (NM_145753, intron 2 of 16)	Tigger3c|DNA|TcMar-Tigger	45195	NM_001134439	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
2105	chr13	49686941	49688908	+	0	NA	intron (NM_014923, intron 1 of 23)	intron (NM_014923, intron 1 of 23)	3485	NM_014923	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
2694	chr22	27287868	27292727	+	0	NA	Intergenic	AluJb|SINE|Alu	236851	NR_033320	440823	Hs.517502	NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2	myocardial infarction associated transcript (non-protein coding)	ncRNA
3292	chr8	32781933	32784419	+	0	NA	Intergenic	Intergenic	203825	NM_001159996	3084	Hs.668810	XM_005273485	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|NDF|SMDF	neuregulin 1	protein-coding
3455	chr1	169541133	169542692	+	0	NA	intron (NM_000130, intron 2 of 24)	intron (NM_000130, intron 2 of 24)	13857	NM_000130	2153	Hs.30054	NM_000130		F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V (proaccelerin, labile factor)	protein-coding
554	chr16	65922799	65924047	+	0	NA	Intergenic	Intergenic	-313220	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
1957	chr11	71782770	71784486	+	0	NA	promoter-TSS (NR_036123)	promoter-TSS (NR_036123)	-280	NR_036123	100422953		NR_036123	ENSG00000263742	MIR3165	-	microRNA 3165	ncRNA
552	chr16	65706021	65708236	+	0	NA	Intergenic	Intergenic	-96925	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
2657	chr21	44628774	44632486	+	0	NA	Intergenic	Intergenic	41489	NM_000394	1409	Hs.184085	XM_005261093	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
4006	chr16	77322600	77324078	+	0	NA	intron (NM_199355, intron 21 of 22)	intron (NM_199355, intron 21 of 22)	89990	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
3766	chr12	123318227	123323645	+	0	NA	intron (NM_003959, intron 1 of 31)	CpG	897	NM_003959	9026	Hs.714965	XM_005253627	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
1623	chr1	20805346	20813806	+	0	NA	3' UTR (NM_018584, exon 2 of 2)	3' UTR (NM_018584, exon 2 of 2)	3152	NM_018584	55450	Hs.731383	NM_018584	ENSG00000162545	CAMK2N1	PRO1489|RP11-401M16.1	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding
74	chr1	144940345	144942174	+	0	NA	intron (NM_001002812, intron 5 of 22)	intron (NM_001002812, intron 5 of 22)	-8894	NM_001002811	9659	Hs.731111	XM_005272981	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
890	chr22	28147442	28150221	+	0	NA	intron (NM_002430, intron 1 of 1)	intron (NM_002430, intron 1 of 1)	48655	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
3699	chr10	105647210	105651103	+	0	NA	intron (NM_024928, intron 8 of 9)	intron (NM_024928, intron 8 of 9)	28889	NM_024928	79991	Hs.62314	NM_024928		OBFC1	AAF-44|AAF44|RP11-541N10.2|RPA-32|STN1|bA541N10.2	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
1926	chr11	65289455	65292370	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-1636	NM_020680	57410	Hs.238839	XM_005274118	ENSG00000142186	SCYL1	GKLP|NKTL|NTKL|P105|TAPK|TEIF|TRAP	SCY1-like 1 (S. cerevisiae)	protein-coding
299	chr11	122079101	122082123	+	0	NA	Intergenic	Intergenic	-6842	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
2024	chr12	11732287	11734294	+	0	NA	Intergenic	Intergenic	32326	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	RP11-434C1.1	-	uncharacterized LOC338817	ncRNA
1282	chr6	21925307	21926558	+	0	NA	intron (NR_015410, intron 5 of 11)	intron (NR_015410, intron 5 of 11)	221490	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
1694	chr1	44619546	44622097	+	0	NA	Intergenic	Intergenic	36299	NM_173484	128209	Hs.567674	XM_005270464	ENSG00000171872	KLF17	ZNF393|Zfp393	Kruppel-like factor 17	protein-coding
1350	chr6	134815860	134817454	+	0	NA	intron (NR_038219, intron 4 of 4)	intron (NR_038219, intron 4 of 4)	57129	NR_038218	154092	Hs.223718	XR_245507		LINC01010	RP11-557H15.2	long intergenic non-protein coding RNA 1010	ncRNA
1240	chr6	2817541	2819457	+	0	NA	Intergenic	Intergenic	23784	NR_073111	1992	Hs.381167	NM_030666	ENSG00000021355	SERPINB1	EI|ELANH2|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin peptidase inhibitor, clade B (ovalbumin), member 1	protein-coding
3183	chr6	147309636	147314214	+	0	NA	intron (NR_034115, intron 6 of 10)	intron (NR_034115, intron 6 of 10)	-186965	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
2815	chr3	159466143	159467936	+	0	NA	intron (NM_001197108, intron 1 of 6)	AluJb|SINE|Alu	-90611	NM_001197109	29970	Hs.134665	XM_005247405	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
3079	chr6	1053741	1057275	+	0	NA	intron (NR_027116, intron 1 of 3)	intron (NR_027116, intron 1 of 3)	46059	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
481	chr14	90310548	90312720	+	0	NA	intron (NM_001284267, intron 5 of 5)	intron (NM_001284267, intron 5 of 5)	109267	NM_001284269	90141	Hs.123232	XM_005268189	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
867	chr20	56353012	56355867	+	0	NA	Intergenic	Intergenic	-67847	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
3355	chr9	72120440	72121829	+	0	NA	intron (NM_001163, intron 2 of 12)	L1PA2|LINE|L1	166141	NM_001163	320	Hs.592974	XM_005251967	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
1976	chr11	122234159	122239691	+	0	NA	Intergenic	Intergenic	-163155	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
3669	chr10	67154177	67155442	+	0	NA	Intergenic	Intergenic	569524	NR_001446	305	Hs.591361	NR_001446		ANXA2P3	ANX2L3|ANX2P3|LIP2|LPC2C	annexin A2 pseudogene 3	pseudo
3442	chrY	2869811	2872612	+	0	NA	non-coding (NR_046502, exon 1 of 4)	non-coding (NR_046502, exon 1 of 4)	174	NR_046502	100873962	Hs.267256	NR_046502	ENSG00000231535	LINC00278	NCRNA00278|RP13-348B13.2	long intergenic non-protein coding RNA 278	ncRNA
817	chr20	35238970	35244095	+	0	NA	TTS (NM_018840)	TTS (NM_018840)	7395	NR_026562	55969	Hs.584985	NM_199484	ENSG00000101084	C20orf24	RIP5	chromosome 20 open reading frame 24	protein-coding
2751	chr3	54924495	54927001	+	0	NA	intron (NM_018398, intron 25 of 37)	intron (NM_018398, intron 25 of 37)	9534	NR_046666	100874237	Hs.570583	NR_046666	ENSG00000243715	CACNA2D3-AS1	RP11-674P14.1	CACNA2D3 antisense RNA 1	ncRNA
3470	chr1	7177150	7178478	+	0	NA	intron (NM_015215, intron 4 of 22)	intron (NM_015215, intron 4 of 22)	332430	NR_038934	23261	Hs.671020	NM_001195563	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
229	chr11	4664318	4670934	+	0	NA	intron (NM_152430, intron 1 of 1)	intron (NM_152430, intron 1 of 1)	2470	NM_152430	143503	Hs.470038	XM_005252798	ENSG00000180785	OR51E1	D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2	olfactory receptor, family 51, subfamily E, member 1	protein-coding
4719	chr6	165985805	165989444	+	0	NA	intron (NM_001130690, intron 1 of 21)	intron (NM_001130690, intron 1 of 21)	87964	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
673	chr2	1632002	1633645	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	115468	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
3322	chr9	2800011	2804553	+	0	NA	Intergenic	Intergenic	41848	NM_014878	9933	Hs.493309	XM_005251635	ENSG00000080608	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
4204	chr2	86205296	86206095	+	0	NA	Intergenic	Intergenic	45296	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
2059	chr12	58922004	58928450	+	0	NA	Intergenic	L1MB4|LINE|L1	388100	NM_001136051	121227	Hs.253736	NM_001136051	ENSG00000139263	LRIG3	LIG3	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
315	chr12	20545507	20548338	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	24743	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
4842	chr7	25888815	25890288	+	0	NA	Intergenic	Intergenic	-8921	NR_046486	100873753		NR_046486		RNU6-16P	RNU6-16	RNA, U6 small nuclear 16, pseudogene	snRNA
1827	chr10	64191578	64195164	+	0	NA	intron (NM_199450, intron 3 of 4)	intron (NM_199450, intron 3 of 4)	-58485	NR_104162	283045		XR_246118		LOC283045	-	uncharacterized LOC283045	ncRNA
1947	chr11	28722760	28725861	+	0	NA	Intergenic	Intergenic	-225215	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
2366	chr19	29095571	29098672	+	0	NA	Intergenic	Intergenic	-358917	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
2501	chr2	100936895	100939732	+	0	NA	exon (NM_198461, exon 1 of 12)	exon (NM_198461, exon 1 of 12)	882	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
1347	chr6	130614233	130616306	+	0	NA	intron (NM_001258275, intron 2 of 13)	intron (NM_001258275, intron 2 of 13)	-71170	NM_001017373	154075	Hs.440508	XM_005266828	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
25	chr1	7537661	7540213	+	0	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-292392	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
1504	chr9	436834	438913	+	0	NA	intron (NM_001193536, intron 38 of 46)	intron (NM_001193536, intron 38 of 46)	-32421	NM_001256876	23189	Hs.306764	XM_005251410	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
3350	chr9	36147052	36150239	+	0	NA	exon (NM_001287011, exon 3 of 5)	exon (NM_001287011, exon 3 of 5)	11863	NM_001287013	152007	Hs.493819	XM_005251369	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
3971	chr15	96803659	96807213	+	0	NA	Intergenic	Intergenic	-63721	NM_001145155	7026	Hs.519445	NM_001145155	ENSG00000185551	NR2F2	ARP1|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
2270	chr17	19574012	19579397	+	0	NA	intron (NM_001031806, intron 10 of 10)	(TTTTTG)n|Simple_repeat|Simple_repeat	24640	NM_001031806	224	Hs.499886	NM_000382	ENSG00000072210	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family, member A2	protein-coding
1253	chr6	161855180	161857570	+	0	NA	intron (NM_013988, intron 6 of 8)	intron (NM_013988, intron 6 of 8)	-161268	NM_020133	56895	Hs.353175	XM_005267052	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
4852	chr7	30835262	30836180	+	0	NA	intron (NR_037598, intron 7 of 19)	intron (NR_037598, intron 7 of 19)	24688	NM_032222	84182	Hs.660192	XM_005249884	ENSG00000106125	FAM188B	C7orf67	family with sequence similarity 188, member B	protein-coding
2648	chr20	49595535	49600164	+	0	NA	Intergenic	Intergenic	22498	NM_014484	27304	Hs.736268	NM_014484	ENSG00000124217	MOCS3	UBA4	molybdenum cofactor synthesis 3	protein-coding
3932	chr15	52088717	52090021	+	0	NA	intron (NM_014548, intron 7 of 9)	intron (NM_014548, intron 7 of 9)	-32456	NM_014547	29766	Hs.4998	NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3 (ubiquitous)	protein-coding
1730	chr1	153462187	153464659	+	0	NA	Intergenic	Intergenic	-30286	NM_002963	6278	Hs.112408	XM_005245431	ENSG00000143556	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
3784	chr12	19897913	19898654	+	0	NA	Intergenic	Intergenic	-269336	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
4479	chr3	119878611	119879751	+	0	NA	Intergenic	Intergenic	-65917	NM_002093	2932	Hs.445733	NM_001146156	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
46	chr1	61718622	61721469	+	0	NA	promoter-TSS (NR_104180)	promoter-TSS (NR_104180)	-855	NR_104180	645030	Hs.632410	XR_246331		RP5-833A20.1	-	uncharacterized LOC645030	ncRNA
3623	chr10	17104735	17105738	+	0	NA	intron (NM_001081, intron 22 of 66)	intron (NM_001081, intron 22 of 66)	66580	NM_001081	8029	Hs.166206	NM_001081	ENSG00000107611	CUBN	IFCR|MGA1|gp280	cubilin (intrinsic factor-cobalamin receptor)	protein-coding
1316	chr6	80144987	80147018	+	0	NA	Intergenic	Intergenic	101145	NM_181714	167691	Hs.21945	XM_005248664	ENSG00000135338	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
1851	chr10	14820031	14822511	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4375	NM_001282695	83641	Hs.446315	XM_005252614	ENSG00000065809	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
4542	chr4	41506310	41507123	+	0	NA	intron (NM_014988, intron 2 of 26)	intron (NM_014988, intron 2 of 26)	-108073	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
3327	chr9	78983094	78995529	+	0	NA	Intergenic	AluJb|SINE|Alu	20133	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
2630	chr20	22987946	22992783	+	0	NA	Intergenic	Intergenic	-25693	NM_001052	6754	Hs.673846	NM_001052	ENSG00000132671	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
2373	chr19	13161010	13168060	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	29140	NM_001271043	4784	Hs.257970	XM_005259917	ENSG00000008441	NFIX	MRSHSS|NF1A|SOTOS2	nuclear factor I/X (CCAAT-binding transcription factor)	protein-coding
2263	chr16	79404848	79407712	+	0	NA	Intergenic	Intergenic	228342	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
3386	chr9	123538099	123543798	+	0	NA	intron (NM_012164, intron 3 of 7)	MIR3|SINE|MIR	14792	NM_012164	26190	Hs.494985	XM_005251908	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
4163	chr2	36805386	36807121	+	0	NA	intron (NM_001042548, intron 4 of 8)	intron (NM_001042548, intron 4 of 8)	19079	NM_001042548	9637	Hs.258563	XR_244972	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding
3505	chr1	61919143	61919810	+	0	NA	intron (NM_001134673, intron 10 of 10)	intron (NM_001134673, intron 10 of 10)	-200286	NR_104180	645030	Hs.632410	XR_246331		RP5-833A20.1	-	uncharacterized LOC645030	ncRNA
317	chr12	21282594	21284500	+	0	NA	promoter-TSS (NM_006446)	promoter-TSS (NM_006446)	-581	NM_006446	10599	Hs.449738	NM_006446	ENSG00000134538	SLCO1B1	HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6	solute carrier organic anion transporter family, member 1B1	protein-coding
1254	chr6	166018044	166020611	+	0	NA	intron (NR_045597, intron 1 of 22)	MIRb|SINE|MIR	56261	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
4555	chr4	85503640	85505099	+	0	NA	5' UTR (NM_001263, exon 1 of 13)	5' UTR (NM_001263, exon 1 of 13)	312	NM_001263	1040	Hs.708641	XM_005262687	ENSG00000163624	CDS1	CDS	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1	protein-coding
1642	chr1	168210493	168214604	+	0	NA	TTS (NM_199344)	TTS (NM_199344)	4120	NR_026844	84832	Hs.537067	NR_026844	ENSG00000214262	ANKRD36BP1	ANKRD26L1|ANKRD36BL1	ankyrin repeat domain 36B pseudogene 1	pseudo
3712	chr11	1578912	1582197	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	12596	NM_004420	1850	Hs.41688	NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
4622	chr5	58581353	58584907	+	0	NA	intron (NM_001165899, intron 3 of 16)	L1MA3|LINE|L1	-11185	NM_001197220	5144	Hs.117545	XM_005248537	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
892	chr22	28144319	28147050	+	0	NA	3' UTR (NM_002430, exon 2 of 2)	3' UTR (NM_002430, exon 2 of 2)	51802	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
3954	chr15	76487757	76492205	+	0	NA	intron (NM_152335, intron 9 of 10)	intron (NM_152335, intron 9 of 10)	62512	NR_028510	7302	Hs.684881	NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
546	chr16	65101373	65106428	+	0	NA	intron (NM_001797, intron 1 of 12)	intron (NM_001797, intron 1 of 12)	52019	NM_001797	1009	Hs.116471	XM_005255761		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
2071	chr12	96439602	96442949	+	0	NA	Intergenic	Intergenic	-3977	NM_001256644	4048	Hs.524648	XM_005268871	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
537	chr16	9416231	9417748	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	88215	NR_036166	100422920		NR_036166	ENSG00000265841	MIR548X	-	microRNA 548x	ncRNA
1007	chr4	23876045	23894670	+	0	NA	intron (NM_013261, intron 2 of 12)	(TTA)n|Simple_repeat|Simple_repeat	6343	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
3896	chr14	68913464	68915724	+	0	NA	intron (NM_133510, intron 9 of 10)	intron (NM_133510, intron 9 of 10)	346037	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
4072	chr18	12605584	12609410	+	0	NA	intron (NM_020148, intron 2 of 15)	intron (NM_020148, intron 2 of 15)	49234	NM_001128627	56907	Hs.515283	XM_005258121	ENSG00000134278	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
1443	chr7	140014775	140017381	+	0	NA	Intergenic	Intergenic	82272	NM_001287498	84255	Hs.738791	XM_005250058	ENSG00000157800	SLC37A3	-	solute carrier family 37, member 3	protein-coding
4441	chr3	69928741	69930337	+	0	NA	intron (NM_198177, intron 2 of 9)	intron (NM_198177, intron 2 of 9)	14164	NM_198177	4286	Hs.618266	XM_005264754	ENSG00000187098	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
1833	chr10	75021809	75024383	+	0	NA	intron (NM_145170, intron 26 of 27)	AluJo|SINE|Alu	-10645	NM_016065	51021	Hs.180312	NM_016065	ENSG00000182180	MRPS16	COXPD2|MRP-S16|RPMS16	mitochondrial ribosomal protein S16	protein-coding
3298	chr8	22529469	22531943	+	0	NA	Intergenic	Intergenic	-4045	NM_018688	55909	Hs.433722	XM_005273573	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
1186	chr5	111847020	111848567	+	0	NA	Intergenic	L1M4|LINE|L1	92513	NR_027706	54508	Hs.591264	NR_027706		EPB41L4A-AS2	-	EPB41L4A antisense RNA 2 (head to head)	ncRNA
3119	chr6	30058869	30060753	+	0	NA	Intergenic	Intergenic	-16183	NM_025236	80352	Hs.121178	NM_170770	ENSG00000204618	RNF39	HZF|HZFW|LIRF	ring finger protein 39	protein-coding
4874	chr7	107734395	107736602	+	0	NA	intron (NM_007356, intron 12 of 33)	MER63B|DNA|hAT-Blackjack	35303	NM_007356	22798	Hs.62022	XM_005250232	ENSG00000091128	LAMB4	-	laminin, beta 4	protein-coding
2240	chr16	67484923	67486750	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	20800	NM_000196	3291	Hs.1376	NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid (11-beta) dehydrogenase 2	protein-coding
3566	chr1	201153142	201155031	+	0	NA	Intergenic	Intergenic	-5867	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
529	chr16	9582937	9585005	+	0	NA	Intergenic	Intergenic	74277	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA mir-7641-2	ncRNA
3556	chr1	183773892	183775233	+	0	NA	intron (NM_015149, intron 2 of 18)	intron (NM_015149, intron 2 of 18)	-152114	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
4309	chr20	6678066	6679023	+	0	NA	Intergenic	MIRb|SINE|MIR	-70201	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
4222	chr2	133957788	133959661	+	0	NA	intron (NR_107007, intron 4 of 6)	MER44B|DNA|TcMar-Tigger	-65043	NR_110294	101928161	Hs.661917	XR_244858	ENSG00000226953	AC010890.1	-	uncharacterized LOC101928161	ncRNA
2573	chr2	240550628	240553868	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-132306	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
987	chr3	161317175	161319083	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	103533	NM_001080440	131149	Hs.585021	XM_005247109	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
2984	chr5	81930166	81932464	+	0	NA	Intergenic	Intergenic	-204659	NR_039773	100616297		NR_039773		MIR3977	-	microRNA 3977	ncRNA
1150	chr5	33091105	33093543	+	0	NA	Intergenic	L1PA16|LINE|L1	144775	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
3988	chr16	56722977	56723784	+	0	NA	Intergenic	Intergenic	6998	NM_005952	4501	Hs.374950	NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
4122	chr19	47403486	47406969	+	0	NA	Intergenic	Intergenic	-16706	NM_004491	2909	Hs.509447	XM_005258823	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
4347	chr20	45752288	45756001	+	0	NA	intron (NM_172110, intron 9 of 13)	intron (NM_172110, intron 9 of 13)	-41465	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
4314	chr20	9051486	9054185	+	0	NA	intron (NM_001172646, intron 1 of 37)	intron (NM_001172646, intron 1 of 37)	3134	NM_001172646	5332	Hs.472101	XM_005260722	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
4239	chr2	175478537	175479892	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	20093	NM_003387	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
2390	chr19	47393144	47398573	+	0	NA	Intergenic	Intergenic	-26075	NM_004491	2909	Hs.509447	XM_005258823	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
908	chr3	123976108	123977809	+	0	NA	intron (NM_001024660, intron 3 of 59)	intron (NM_001024660, intron 3 of 59)	-116221	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA mir-6083	ncRNA
2580	chr20	56226744	56246258	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	29179	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
4900	chr8	40205796	40209030	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	196426	NM_020130	56892	Hs.745031	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
4151	chr2	27515487	27517533	+	0	NA	intron (NM_187841, intron 1 of 8)	intron (NM_187841, intron 1 of 8)	11213	NM_032546	57159	Hs.516036	XM_005264435	ENSG00000138100	TRIM54	MURF|MURF-3|RNF30|muRF3	tripartite motif containing 54	protein-coding
284	chr11	100273650	100275582	+	0	NA	Intergenic	Intergenic	-283791	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
3127	chr6	41697945	41703904	+	0	NA	intron (NM_007162, intron 1 of 9)	intron (NM_007162, intron 1 of 9)	1215	NM_001271945	7942	Hs.485360	XM_005249410	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
247	chr11	8248419	8252025	+	0	NA	intron (NM_001270428, intron 2 of 3)	intron (NM_001270428, intron 2 of 3)	35203	NR_073006	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
903	chr3	46626471	46628886	+	0	NA	Intergenic	Intergenic	8602	NM_003212	6997	Hs.385870	XM_005265418	ENSG00000241186	TDGF1	CR|CRGF|CRIPTO	teratocarcinoma-derived growth factor 1	protein-coding
1340	chr6	124546945	124548664	+	0	NA	intron (NM_001040214, intron 1 of 6)	intron (NM_001040214, intron 1 of 6)	422735	NM_001040214	154215	Hs.656604	XM_005266833	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Na+/K+ transporting ATPase interacting 2	protein-coding
3870	chr13	110746517	110747877	+	0	NA	Intergenic	Intergenic	212299	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
4389	chr22	28122320	28123708	+	0	NA	Intergenic	Intergenic	74472	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
3927	chr15	33158115	33160415	+	0	NA	intron (NM_001277313, intron 16 of 20)	L2b|LINE|L2	-148199	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
289	chr11	111173217	111175015	+	0	NA	intron (NM_001271457, intron 2 of 4)	intron (NM_001271457, intron 2 of 4)	-3577	NR_034154	399948	Hs.729225	XR_246432	ENSG00000196167	COLCA1	C11orf92|CASC12	colorectal cancer associated 1	ncRNA
4739	chr6	11810076	11811322	+	0	NA	Intergenic	Intergenic	-31419	NM_032744	84830	Hs.126409	XM_005249453	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
4411	chr3	9461873	9466098	+	0	NA	intron (NM_001080517, intron 1 of 22)	intron (NM_001080517, intron 1 of 22)	24582	NM_001080517	55209	Hs.288164	XM_005265296	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding
2119	chr14	54311787	54319340	+	0	NA	Intergenic	Intergenic	99639	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
3891	chr14	54316439	54319101	+	0	NA	Intergenic	L2b|LINE|L2	97432	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
808	chr2	243010749	243013430	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	-18755	NR_024437	728323	Hs.471887	XR_241435		LOC728323	-	uncharacterized LOC728323	ncRNA
845	chr20	20739108	20740585	+	0	NA	Intergenic	AluSz6|SINE|Alu	-46580	NM_020343	57186	Hs.472285	XM_005260768	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
1847	chr10	12310479	12314710	+	0	NA	Intergenic	AluSq2|SINE|Alu	-74451	NM_014142	11164	Hs.555956	NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hYSAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding
147	chr10	18988301	18990085	+	0	NA	Intergenic	Intergenic	40880	NM_178815	221079	Hs.594569	XM_005252400	ENSG00000165997	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
1249	chr6	136737504	136748724	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	44899	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
1142	chr5	5134834	5137536	+	0	NA	intron (NR_109915, intron 1 of 3)	MER58A|DNA|hAT-Charlie	3982	NR_109915	101929176	Hs.582437	XR_241728	ENSG00000250579	CTD-2297D10.2	-	uncharacterized LOC101929176	ncRNA
4952	chr9	78983765	78985099	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	25012	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
4708	chr6	36643584	36651035	+	0	NA	intron (NM_001220778, intron 1 of 2)	CpG	822	NM_001220778	1026	Hs.732576	XM_005248787	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin-dependent kinase inhibitor 1A (p21, Cip1)	protein-coding
1291	chr6	28552111	28553643	+	0	NA	intron (NM_052923, intron 1 of 3)	intron (NM_052923, intron 1 of 3)	2235	NM_052923	114821	Hs.176980	NM_052923	ENSG00000232040	SCAND3	Buster4|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
2095	chr13	23892875	23897797	+	0	NA	intron (NM_000231, intron 7 of 7)	intron (NM_000231, intron 7 of 7)	54346	NM_001278055	26278	Hs.159492	XM_005266338	ENSG00000151835	SACS	ARSACS|DNAJC29	spastic ataxia of Charlevoix-Saguenay (sacsin)	protein-coding
2599	chr20	40271455	40273400	+	0	NA	Intergenic	Intergenic	-25294	NM_032221	84181	Hs.740645	XM_005260573	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
2601	chr20	46412607	46416037	+	0	NA	intron (NM_198596, intron 1 of 20)	CpG	486	NM_018837	55959	Hs.162016	XM_005260458	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
3227	chr7	18547780	18549654	+	0	NA	promoter-TSS (NM_001204147)	promoter-TSS (NM_001204147)	-183	NM_001204147	9734	Hs.196054	XM_005249913	ENSG00000048052	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
2960	chr5	6903297	6907368	+	0	NA	Intergenic	Intergenic	-77298	NR_036242	100422999		NR_036242		MIR4278	-	microRNA 4278	ncRNA
1052	chr4	41455443	41462251	+	0	NA	intron (NM_014988, intron 1 of 26)	MLT1G1|LTR|ERVL-MaLR	96045	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4522	chr4	173898171	173902112	+	0	NA	intron (NM_001034845, intron 10 of 12)	MIRb|SINE|MIR	-189763	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
4188	chr2	67799289	67800496	+	0	NA	Intergenic	Intergenic	175450	NM_019002	54465	Hs.353022	XM_005264374	ENSG00000143971	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
4250	chr2	211027002	211028011	+	0	NA	intron (NM_152519, intron 1 of 14)	L2|LINE|L2	8545	NM_152519	151050	Hs.591638	XM_005246328	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1-like	protein-coding
1493	chr9	2260094	2261969	+	0	NA	Intergenic	Intergenic	102575	NM_001289400	6595	Hs.644901	XM_005251557	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
2397	chr2	118879546	118882654	+	0	NA	Intergenic	Intergenic	35050	NM_016133	51141	Hs.7089	XM_005263690	ENSG00000125629	INSIG2	-	insulin induced gene 2	protein-coding
4298	chr20	56587667	56596648	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	121707	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	-	microRNA 4532	ncRNA
974	chr3	127260573	127263989	+	0	NA	Intergenic	L2a|LINE|L2	31893	NR_106883	102466199		NR_106883		MIR6825	hsa-mir-6825	microRNA mir-6825	ncRNA
2629	chr20	22978516	22984301	+	0	NA	Intergenic	Intergenic	-34649	NM_001052	6754	Hs.673846	NM_001052	ENSG00000132671	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
1668	chr1	240352846	240355671	+	0	NA	intron (NM_020066, intron 4 of 17)	intron (NM_020066, intron 4 of 17)	99073	NM_020066	56776	Hs.24889	XM_005273200	ENSG00000155816	FMN2	-	formin 2	protein-coding
1715	chr1	113848877	113852332	+	0	NA	Intergenic	Intergenic	-82871	NM_001142782	260425	Hs.486189	XM_005270736	ENSG00000081026	MAGI3	MAGI-3|RP4-730K3.1|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
1613	chrY	19883768	19885879	+	0	NA	Intergenic	L1M3e|LINE|L1	-2383	NM_001002906	353515	Hs.632286	NM_001002906		XKRY2	XKRYP7	XK, Kell blood group complex subunit-related, Y-linked 2	protein-coding
4247	chr2	201237916	201239287	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	64928	NM_001282744	26010	Hs.120323	XM_005246454	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
636	chr19	11006854	11008782	+	0	NA	intron (NM_199141, intron 1 of 15)	MIRc|SINE|MIR	25565	NM_199141	10498	Hs.323213	XM_005259708	ENSG00000142453	CARM1	PRMT4	coactivator-associated arginine methyltransferase 1	protein-coding
1104	chr4	150085425	150086264	+	0	NA	Intergenic	Intergenic	-722172	NM_001166104	4306	Hs.163924	XM_005263014	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
1406	chr7	36662314	36663702	+	0	NA	intron (NM_001637, intron 6 of 20)	intron (NM_001637, intron 6 of 20)	-23282	NR_046764	100874264	Hs.690994	NR_046764		AOAH-IT1	AC087069.1	AOAH intronic transcript 1 (non-protein coding)	ncRNA
1905	chr10	112645236	112647609	+	0	NA	intron (NM_014456, intron 5 of 11)	MIRb|SINE|MIR	-11426	NR_039828	100616113		NR_039828	ENSG00000265827	MIR4680	-	microRNA 4680	ncRNA
3203	chr7	2438034	2441537	+	0	NA	Intergenic	Intergenic	-3410	NM_001243795	55501	Hs.744987	NM_001243794	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate (chondroitin 4) sulfotransferase 12	protein-coding
117	chr1	197927221	197929308	+	0	NA	Intergenic	Intergenic	41747	NM_020204	56956	Hs.706475	XM_005245349	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
2207	chr15	66230860	66234725	+	0	NA	intron (NM_032445, intron 10 of 22)	intron (NM_032445, intron 10 of 22)	70995	NM_004663	8766	Hs.321541	XM_005254738	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
3754	chr11	126209442	126210811	+	0	NA	intron (NM_014026, intron 4 of 5)	intron (NM_014026, intron 4 of 5)	15356	NR_033839	399972	Hs.585206	NR_033839		ST3GAL4-AS1	DCPS-AS1	ST3GAL4 antisense RNA 1 (head to head)	ncRNA
2472	chr2	64329859	64335255	+	0	NA	intron (NM_020651, intron 2 of 6)	intron (NM_020651, intron 2 of 6)	39048	NM_020651	57162	Hs.7886	XM_005264436	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
821	chr20	3351940	3357068	+	0	NA	intron (NM_001009984, intron 6 of 36)	intron (NM_001009984, intron 6 of 36)	33805	NM_001009984	25943	Hs.516853	XM_005260684	ENSG00000088854	C20orf194	-	chromosome 20 open reading frame 194	protein-coding
696	chr2	30632436	30634518	+	0	NA	Intergenic	Intergenic	-36646	NM_182551	253558	Hs.662770	XM_005264244	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
4586	chr4	170035864	170037872	+	0	NA	intron (NM_020870, intron 10 of 11)	MER1A|DNA|hAT-Charlie	-105400	NM_032783	84869	Hs.659311	XM_005263315	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
1721	chr1	145232582	145234806	+	0	NA	intron (NM_203458, intron 1 of 4)	intron (NM_203458, intron 1 of 4)	24581	NM_203458	388677	Hs.728902	XM_005272954	ENSG00000213240	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
3376	chr9	110309890	110311912	+	0	NA	Intergenic	Intergenic	-58854	NM_004235	9314	Hs.376206	XM_005252305	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
2179	chr15	31314969	31317767	+	0	NA	intron (NM_002420, intron 26 of 26)	intron (NM_002420, intron 26 of 26)	-32561	NM_017762	54893	Hs.30141	XM_005254506	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
2172	chr15	79964633	79970523	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	221761	NR_037654	10588	Hs.459049	NM_001199758		MTHFS	HsT19268	5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)	protein-coding
1431	chr7	120041950	120043728	+	0	NA	intron (NM_012281, intron 1 of 5)	intron (NM_012281, intron 1 of 5)	129117	NM_012281	3751	Hs.654739	XM_005250322	ENSG00000184408	KCND2	KV4.2|RK5	potassium voltage-gated channel, Shal-related subfamily, member 2	protein-coding
1489	chr8	135874261	135880115	+	0	NA	Intergenic	Intergenic	-60000	NR_029599	407033		NR_029599	ENSG00000199153	MIR30D	MIRN30D	microRNA 30d	ncRNA
3050	chr6	21740043	21744619	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	75656	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4565	chr4	129274396	129277146	+	0	NA	Intergenic	MIR3|SINE|MIR	-65787	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
1805	chr1	234639943	234642878	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	26115	NR_038426	100506795	Hs.448989	XR_247017	ENSG00000231768	RP5-855F14.1	-	uncharacterized LOC100506795	ncRNA
3226	chr7	17734199	17739018	+	0	NA	Intergenic	Intergenic	-138075	NR_110013	101927630	Hs.583400	XR_242134		AC017060.1	-	uncharacterized LOC101927630	ncRNA
1727	chr1	151554607	151560162	+	0	NA	Intergenic	Intergenic	-27278	NM_030918	81609	Hs.192326	XM_005245509	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
2922	chr4	184825787	184827757	+	0	NA	5' UTR (NM_020225, exon 1 of 4)	5' UTR (NM_020225, exon 1 of 4)	263	NM_020225	56977	Hs.696657	XM_005263142	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
4967	chr9	100984375	100987698	+	0	NA	intron (NM_001267571, intron 5 of 12)	intron (NM_001267571, intron 5 of 12)	5463	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA mir-6854	ncRNA
2178	chr15	30015839	30018864	+	0	NA	intron (NM_003257, intron 18 of 27)	intron (NM_003257, intron 18 of 27)	97355	NM_175610	7082	Hs.743990	XM_005254616	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
1225	chr5	157856708	157857506	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-20326	NR_109888	101927697	Hs.483960	XR_245280		LOC101927697	-	uncharacterized LOC101927697	ncRNA
290	chr11	111178386	111179841	+	0	NA	exon (NM_001271458, exon 5 of 5)	exon (NM_001271458, exon 5 of 5)	-8574	NR_034154	399948	Hs.729225	XR_246432	ENSG00000196167	COLCA1	C11orf92|CASC12	colorectal cancer associated 1	ncRNA
2909	chr4	149362078	149367343	+	0	NA	Intergenic	CpG-20176	-1038	NM_001166104	4306	Hs.163924	XM_005263014	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
210	chr10	97108758	97111912	+	0	NA	intron (NM_015385, intron 18 of 24)	intron (NM_015385, intron 18 of 24)	-59430	NM_020992	9124	Hs.368525	XM_005270268	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
712	chr2	61215776	61217204	+	0	NA	intron (NM_144709, intron 4 of 17)	HAL1|LINE|L1	-28322	NM_002618	5194	Hs.161377	NM_002618	ENSG00000162928	PEX13	NALD|PBD11A|PBD11B|ZWS	peroxisomal biogenesis factor 13	protein-coding
2560	chr2	228027309	228031446	+	0	NA	promoter-TSS (NM_000091)	promoter-TSS (NM_000091)	96	NM_000091	1285	Hs.570065	XM_005246275	ENSG00000169031	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
3365	chr9	87465894	87468419	+	0	NA	intron (NM_001018066, intron 12 of 13)	intron (NM_001018066, intron 12 of 13)	182530	NM_001007097	4915	Hs.712776	XM_005252001	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
2702	chr22	40393007	40396524	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	3812	NM_138435	113828	Hs.197680	NM_138435		FAM83F	-	family with sequence similarity 83, member F	protein-coding
4529	chr4	7810923	7813229	+	0	NA	intron (NM_198595, intron 8 of 16)	L2a|LINE|L2	56259	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
2593	chr20	22740828	22759735	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-162126	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
3196	chr6	166384210	166387153	+	0	NA	intron (NR_026860, intron 1 of 1)	intron (NR_026860, intron 1 of 1)	-15358	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
1895	chr10	93366981	93371859	+	0	NA	intron (NR_024467, intron 1 of 4)	L1MA7|LINE|L1	1797	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
2920	chr4	184358699	184360906	+	0	NA	Intergenic	Intergenic	-5987	NM_017632	55602	Hs.644077	XM_005263118	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
2038	chr12	20097449	20100821	+	0	NA	Intergenic	Intergenic	-68484	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
4465	chr3	111303400	111304027	+	0	NA	intron (NM_198196, intron 5 of 14)	L2c|LINE|L2	10469	NM_024508	79413	Hs.136912	NM_024508	ENSG00000177494	ZBED2	-	zinc finger, BED-type containing 2	protein-coding
4283	chr20	62127422	62131289	+	0	NA	intron (NM_001958, intron 1 of 7)	intron (NM_001958, intron 1 of 7)	1313	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
3799	chr12	53889323	53890933	+	0	NA	intron (NM_001193511, intron 1 of 13)	intron (NM_001193511, intron 1 of 13)	3316	NM_006301	7786	Hs.713539	XM_005269138	ENSG00000139625	MAP3K12	DLK|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
4399	chr3	15351580	15353216	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	21738	NM_004844	9467	Hs.257761	XM_005265588	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
1159	chr5	54169653	54171598	+	0	NA	Intergenic	Intergenic	110789	NM_007036	11082	Hs.129944	NM_001135604	ENSG00000164283	ESM1	endocan	endothelial cell-specific molecule 1	protein-coding
2048	chr12	50353035	50355081	+	0	NA	Intergenic	Intergenic	-1221	NM_001651	362	Hs.298023	XM_005268838		AQP5	AQP-5|PPKB	aquaporin 5	protein-coding
4512	chr4	7814504	7815984	+	0	NA	intron (NM_198595, intron 8 of 16)	intron (NM_198595, intron 8 of 16)	59427	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
655	chr2	30521894	30526091	+	0	NA	Intergenic	Intergenic	69595	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
3110	chr6	21738076	21739876	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	72301	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
421	chr13	40845672	40847360	+	0	NA	Intergenic	Intergenic	-51877	NR_033877	400123	Hs.577960	NR_033877		LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
2332	chr18	12605143	12609355	+	0	NA	intron (NM_020148, intron 2 of 15)	intron (NM_020148, intron 2 of 15)	49482	NM_001128627	56907	Hs.515283	XM_005258121	ENSG00000134278	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
4644	chr5	95145811	95147528	+	0	NA	Intergenic	Intergenic	11908	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
271	chr11	74029094	74031627	+	0	NA	Intergenic	L2b|LINE|L2	-7639	NM_001288748	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
3742	chr11	94336092	94336683	+	0	NA	intron (NM_152431, intron 12 of 19)	intron (NM_152431, intron 12 of 19)	35913	NM_152431	143689	Hs.660188	XM_005273778	ENSG00000134627	PIWIL4	HIWI2|MIWI2	piwi-like RNA-mediated gene silencing 4	protein-coding
1024	chr4	7586845	7588555	+	0	NA	intron (NM_020777, intron 3 of 26)	L1M6|LINE|L1	125945	NR_036238	100422826		NR_036238		MIR4274	-	microRNA 4274	ncRNA
4822	chr6	160799636	160800996	+	0	NA	intron (NM_021977, intron 1 of 10)	intron (NM_021977, intron 1 of 10)	30911	NM_021977	6581	Hs.567337	XM_005267106	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 (organic cation transporter), member 3	protein-coding
3174	chr6	134837703	134839501	+	0	NA	Intergenic	Intergenic	79074	NR_038218	154092	Hs.223718	XR_245507		LINC01010	RP11-557H15.2	long intergenic non-protein coding RNA 1010	ncRNA
2867	chr4	38161435	38166224	+	0	NA	Intergenic	LTR78|LTR|ERV1	42254	NM_001253915	23216	Hs.176503	XM_005262646	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
491	chr15	32978827	32982280	+	0	NA	intron (NM_003020, intron 4 of 5)	intron (NM_003020, intron 4 of 5)	-29652	NM_001191323	26585	Hs.40098	XM_005254301	ENSG00000166923	GREM1	CKTSF1B1|DAND2|DRM|GREMLIN|IHG-2	gremlin 1, DAN family BMP antagonist	protein-coding
2871	chr4	57929934	57933134	+	0	NA	intron (NM_001553, intron 1 of 4)	intron (NM_001553, intron 1 of 4)	-44394	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	RP11-12A1.1	IGFBP7 antisense RNA 1	ncRNA
1863	chr10	29279022	29281896	+	0	NA	Intergenic	Intergenic	145122	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
4495	chr3	153452696	153453484	+	0	NA	Intergenic	MER57D|LTR|ERV1	250806	NM_001101337	152118	Hs.58586	NM_001101337	ENSG00000237787	C3orf79	-	chromosome 3 open reading frame 79	protein-coding
13	chr1	201104832	201116310	+	0	NA	intron (NR_109920, intron 6 of 6)	intron (NR_109920, intron 6 of 6)	13112	NM_016456	252839	Hs.181444	XM_005245063	ENSG00000116857	TMEM9	TMEM9A	transmembrane protein 9	protein-coding
3953	chr15	75338197	75340731	+	0	NA	intron (NM_021823, intron 4 of 5)	intron (NM_021823, intron 4 of 5)	23537	NM_021823	60490	Hs.458922	XM_005254579	ENSG00000138621	PPCDC	-	phosphopantothenoylcysteine decarboxylase	protein-coding
4672	chr5	138179962	138181911	+	0	NA	intron (NM_001903, intron 7 of 17)	intron (NM_001903, intron 7 of 17)	30121	NM_015564	26045	Hs.656653	XM_005271953	ENSG00000146006	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
1514	chr9	26169079	26171055	+	0	NA	Intergenic	Intergenic	103394	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
4098	chr19	29096394	29098495	+	0	NA	Intergenic	LTR2|LTR|ERV1	-358594	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
4906	chr8	38258580	38259972	+	0	NA	intron (NM_001286819, intron 6 of 10)	intron (NM_001286819, intron 6 of 10)	14627	NM_001199660	137994	Hs.734005	XM_005273406	ENSG00000165046	LETM2	-	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding
840	chr20	16745156	16746812	+	0	NA	Intergenic	Intergenic	16986	NM_020157	56914	Hs.41119	XM_005260762	ENSG00000125879	OTOR	FDP|MIAL1	otoraplin	protein-coding
1647	chr1	180565470	180570432	+	0	NA	Intergenic	Intergenic	-33195	NM_001135669	9213	Hs.227656	NM_001135669	ENSG00000143324	XPR1	SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
4693	chr5	172378281	172380168	+	0	NA	3' UTR (NM_001031711, exon 10 of 10)	3' UTR (NM_001031711, exon 10 of 10)	6554	NR_026683	100268168	Hs.519766	XR_245267	ENSG00000204758	LOC100268168	-	uncharacterized LOC100268168	ncRNA
597	chr18	45512929	45516153	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	-57024	NM_001003652	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
4541	chr4	41408398	41409404	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	46099	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4372	chr21	40278510	40279405	+	0	NA	Intergenic	MIR3|SINE|MIR	49494	NR_109926	101928398	Hs.122403	XR_244310		LOC101928398	-	uncharacterized LOC101928398	ncRNA
1411	chr7	48820852	48822854	+	0	NA	Intergenic	L1MEg|LINE|L1	-142304	NR_003595	168448	Hs.567757	NR_003595		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
1480	chr8	110632382	110634174	+	0	NA	intron (NM_001099746, intron 1 of 5)	intron (NM_001099746, intron 1 of 5)	22141	NM_001099756	55638	Hs.390738	XM_005250999	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
4793	chr6	108322905	108324781	+	0	NA	Intergenic	Intergenic	-44361	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
4867	chr7	93543201	93545945	+	0	NA	Intergenic	Intergenic	-6443	NM_004126	2791	Hs.83381	NM_004126		GNG11	GNGT11	guanine nucleotide binding protein (G protein), gamma 11	protein-coding
3265	chr7	106064411	106067112	+	0	NA	Intergenic	Intergenic	-140123	NM_005746	10135	Hs.489615	XM_005250100	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
3581	chr1	205116133	205117008	+	0	NA	3' UTR (NM_199462, exon 12 of 12)	3' UTR (NM_199462, exon 12 of 12)	-25420	NM_001193272	5929	Hs.519230	XM_005245398	ENSG00000117222	RBBP5	RBQ3|SWD1	retinoblastoma binding protein 5	protein-coding
242	chr11	4685969	4687861	+	0	NA	Intergenic	Intergenic	21759	NM_152430	143503	Hs.470038	XM_005252798	ENSG00000180785	OR51E1	D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2	olfactory receptor, family 51, subfamily E, member 1	protein-coding
32	chr1	20219583	20221473	+	0	NA	intron (NM_015207, intron 2 of 7)	MIR|SINE|MIR	11640	NM_015207	23252	Hs.374987	XM_005245792	ENSG00000169914	OTUD3	DUBA4|RP11-460G22.1	OTU domain containing 3	protein-coding
1588	chrX	76394564	76396543	+	0	NA	Intergenic	Intergenic	-255768	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
4138	chr2	1628679	1629859	+	0	NA	Intergenic	Intergenic	119022	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
443	chr14	85948085	85950758	+	0	NA	Intergenic	Intergenic	-47067	NM_013231	23768	Hs.744139	XM_005267489	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
2234	chr16	1046715	1049109	+	0	NA	Intergenic	CpG	16104	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
1795	chr1	227001254	227005055	+	0	NA	Intergenic	Intergenic	-55119	NM_012486	5664	Hs.25363	XM_005273198	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
4391	chr22	32346347	32349487	+	0	NA	intron (NM_003405, intron 1 of 1)	intron (NM_003405, intron 1 of 1)	-6581	NM_015372	25775	Hs.627602	XM_005261497	ENSG00000128254	C22orf24	HSN44A4A	chromosome 22 open reading frame 24	protein-coding
3519	chr1	145218827	145220588	+	0	NA	intron (NM_203458, intron 1 of 4)	intron (NM_203458, intron 1 of 4)	10594	NM_203458	388677	Hs.728902	XM_005272954	ENSG00000213240	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
3273	chr7	111154918	111159189	+	0	NA	intron (NM_032549, intron 2 of 5)	intron (NM_032549, intron 2 of 5)	45294	NM_032549	83943	Hs.731706	XM_005250629	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
846	chr20	20760357	20762260	+	0	NA	Intergenic	Intergenic	-68042	NM_020343	57186	Hs.472285	XM_005260768	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
1689	chr1	41409039	41412010	+	0	NA	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-34483	NM_001905	1503	Hs.473087	XM_005270535	ENSG00000171793	CTPS1	CTPS	CTP synthase 1	protein-coding
1861	chr10	28030625	28032148	+	0	NA	intron (NM_001242702, intron 2 of 6)	CpG-2675	3392	NM_001242702	283078	Hs.128193	NM_001242702	ENSG00000150051	MKX	C10orf48|IFRX|IRXL1	mohawk homeobox	protein-coding
3484	chr1	28742952	28745163	+	0	NA	intron (NM_001048183, intron 2 of 13)	MER44B|DNA|TcMar-Tigger	-20604	NM_023923	65979	Hs.225641	XM_005245970	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
2825	chr3	194406054	194408019	+	0	NA	5' UTR (NM_153690, exon 1 of 1)	5' UTR (NM_153690, exon 1 of 1)	414	NM_153690	131583	Hs.435080	NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43, member A	protein-coding
1296	chr6	36873635	36876238	+	0	NA	intron (NM_001286636, intron 5 of 9)	L2a|LINE|L2	21296	NM_001286635	221477	Hs.433381	XM_005248918	ENSG00000198663	C6orf89	BRAP	chromosome 6 open reading frame 89	protein-coding
3312	chr8	110618208	110621056	+	0	NA	intron (NM_001099756, intron 2 of 5)	intron (NM_001099756, intron 2 of 5)	35787	NM_001099756	55638	Hs.390738	XM_005250999	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
1553	chrX	107757449	107761136	+	0	NA	intron (NM_033380, intron 1 of 50)	intron (NM_033380, intron 1 of 50)	76218	NM_033380	1287	Hs.369089	XM_005262070	ENSG00000188153	COL4A5	ASLN|ATS|CA54	collagen, type IV, alpha 5	protein-coding
3415	chrX	39753667	39755876	+	0	NA	Intergenic	Intergenic	201948	NM_017745	54880	Hs.659681	XM_005272616	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
2161	chr14	98535800	98537479	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-92178	NR_015430	388011	Hs.651477	NR_015430	ENSG00000246223	C14orf64	-	chromosome 14 open reading frame 64	ncRNA
2897	chr4	129471461	129477166	+	0	NA	Intergenic	Intergenic	-256465	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
4051	chr17	62150373	62154159	+	0	NA	intron (NM_001433, intron 5 of 21)	intron (NM_001433, intron 5 of 21)	-54272	NM_001099787	3384	Hs.431460	NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
1303	chr6	44051311	44053563	+	0	NA	Intergenic	Intergenic	42754	NM_032111	64928	Hs.311190	XM_005249299	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
4195	chr2	72500433	72501097	+	0	NA	intron (NM_015189, intron 20 of 21)	L2c|LINE|L2	-125774	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
4738	chr6	11765994	11767845	+	0	NA	intron (NM_032744, intron 2 of 5)	intron (NM_032744, intron 2 of 5)	12361	NM_001143948	84830	Hs.126409	XM_005249453	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
1654	chr1	201276150	201281793	+	0	NA	intron (NM_001005337, intron 2 of 13)	MER20B|DNA|hAT-Charlie	26391	NM_000299	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)	protein-coding
3494	chr1	44620392	44621616	+	0	NA	Intergenic	Intergenic	36482	NM_173484	128209	Hs.567674	XM_005270464	ENSG00000171872	KLF17	ZNF393|Zfp393	Kruppel-like factor 17	protein-coding
3510	chr1	89487834	89488724	+	0	NA	intron (NM_018284, intron 1 of 10)	intron (NM_018284, intron 1 of 10)	270	NM_018284	2635	Hs.720167	XM_005270741	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
4638	chr5	87971195	87972399	+	0	NA	intron (NR_015436, intron 1 of 4)	CpG	2465	NR_024383	645323	Hs.744298	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|Visc-1a|Visc-1b	long intergenic non-protein coding RNA 461	ncRNA
15	chr1	213153266	213156424	+	0	NA	intron (NM_001136474, intron 8 of 8)	intron (NM_001136474, intron 8 of 8)	30958	NM_001136475	79805	Hs.96885	XM_005273268	ENSG00000143494	VASH2	RP11-275G3.1	vasohibin 2	protein-coding
3268	chr7	107873702	107878158	+	0	NA	intron (NM_005010, intron 4 of 27)	intron (NM_005010, intron 4 of 27)	4684	NM_001037132	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
4624	chr5	64775978	64776890	+	0	NA	intron (NM_197941, intron 1 of 24)	intron (NM_197941, intron 1 of 24)	1270	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif, 6	protein-coding
3016	chr5	133575648	133577247	+	0	NA	Intergenic	Intergenic	-14497	NM_002715	5515	Hs.105818	NM_002715		PPP2CA	PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2, catalytic subunit, alpha isozyme	protein-coding
2236	chr16	77331500	77333928	+	0	NA	intron (NM_199355, intron 17 of 22)	intron (NM_199355, intron 17 of 22)	99365	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
1506	chr9	446902	448719	+	0	NA	intron (NM_001193536, intron 43 of 46)	Tigger13a|DNA|TcMar-Tigger	-22484	NM_001256876	23189	Hs.306764	XM_005251410	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
4026	chr17	2906888	2908417	+	0	NA	intron (NM_001100398, intron 13 of 23)	intron (NM_001100398, intron 13 of 23)	59249	NM_014566	8386	Hs.553508	NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31	olfactory receptor, family 1, subfamily D, member 5	protein-coding
2855	chr4	187856413	187859107	+	0	NA	Intergenic	Intergenic	-212773	NM_005245	2195	Hs.481371	XM_005262834	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
4810	chr6	140858246	140860225	+	0	NA	Intergenic	Intergenic	-145716	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
2145	chr14	65146693	65149903	+	0	NA	Intergenic	AluJb|SINE|Alu	-22895	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
859	chr20	43983081	43985537	+	0	NA	Intergenic	Intergenic	-6268	NM_001197129	90196	Hs.733183	XM_005260606	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding
3693	chr10	97883734	97885086	+	0	NA	Intergenic	L1M4c|LINE|L1	-5062	NM_014803	9849	Hs.651650	NM_001278524		ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
4284	chr20	3292216	3297183	+	0	NA	intron (NM_001009984, intron 20 of 36)	MLT1E2-int|LTR|ERVL-MaLR	-74812	NM_001174089	83959	Hs.105607	XM_005260856	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	solute carrier family 4, sodium borate transporter, member 11	protein-coding
739	chr2	76541084	76542589	+	0	NA	Intergenic	Intergenic	-603725	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
4507	chr3	193829350	193831741	+	0	NA	Intergenic	Intergenic	-23386	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
876	chr21	36588784	36590840	+	0	NA	Intergenic	Intergenic	-168217	NM_001754	861	Hs.612648	XM_005261067	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
2890	chr4	103798558	103800426	+	0	NA	intron (NM_001008388, intron 1 of 2)	AluSc|SINE|Alu	9357	NM_001008388	493856	Hs.745013	XM_005263040		CISD2	ERIS|Miner1|NAF-1|WFS2|ZCD2	CDGSH iron sulfur domain 2	protein-coding
3967	chr15	91100211	91108466	+	0	NA	intron (NM_001042574, intron 2 of 14)	MIR|SINE|MIR	31220	NM_022769	64784	Hs.567572	XM_005254968	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
4751	chr6	22115657	22116367	+	0	NA	intron (NR_015410, intron 9 of 11)	intron (NR_015410, intron 9 of 11)	31410	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
135	chr1	225071504	225073175	+	0	NA	Intergenic	LTR40A1|LTR|ERVL	-45017	NM_001145154	127602	Hs.133977	NM_001145154	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein, axonemal, heavy chain 14	protein-coding
3344	chr9	26258971	26263062	+	0	NA	Intergenic	Intergenic	194343	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
3913	chr14	100768141	100770144	+	0	NA	intron (NM_001039355, intron 1 of 3)	L1M6|LINE|L1	3718	NM_001039355	123096	Hs.578109	XM_005267343	ENSG00000197119	SLC25A29	AL157871.2|C14orf69|CACL|ORNT3	solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29	protein-coding
4687	chr5	156811349	156812936	+	0	NA	intron (NM_001037332, intron 28 of 30)	intron (NM_001037332, intron 28 of 30)	-39413	NM_001001343	408263	Hs.437066	NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
145	chr10	78249442	78253488	+	0	NA	intron (NM_032024, intron 5 of 5)	L1M1|LINE|L1	708946	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
2674	chr21	43647517	43649542	+	0	NA	intron (NM_016818, intron 2 of 14)	intron (NM_016818, intron 2 of 14)	8521	NM_207174	9619	Hs.418279	XM_005261209	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding
1131	chr5	170177787	170180975	+	0	NA	Intergenic	Intergenic	-31342	NM_014211	2568	Hs.26225	XM_005265871	ENSG00000094755	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
3624	chr10	25245582	25248626	+	0	NA	Intergenic	Intergenic	-5531	NM_001282786	56952	Hs.405619	XM_005252537	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
772	chr2	182740748	182742449	+	0	NA	Intergenic	L2a|LINE|L2	-14845	NM_001287504	6744	Hs.196983	XM_005246812	ENSG00000138434	SSFA2	CS-1|CS1|KRAP|SPAG13	sperm specific antigen 2	protein-coding
1876	chr10	64271082	64274029	+	0	NA	intron (NM_199451, intron 4 of 7)	intron (NM_199451, intron 4 of 7)	-7652	NM_199452	22891	Hs.22653	NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
3803	chr12	58281846	58285112	+	0	NA	Intergenic	Intergenic	-42732	NM_005730	10106	Hs.524530	XM_005268556	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
1759	chr1	197139123	197141295	+	0	NA	intron (NM_194314, intron 9 of 9)	intron (NM_194314, intron 9 of 9)	-24385	NM_001206846	259266	Hs.121028	NM_001206846	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	asp (abnormal spindle) homolog, microcephaly associated (Drosophila)	protein-coding
4514	chr4	66533673	66537048	+	0	NA	promoter-TSS (NR_034138)	promoter-TSS (NR_034138)	-319	NR_034138	100144602	Hs.201854	NR_034138	ENSG00000250846	RP11-807H7.1	-	uncharacterized LOC100144602	ncRNA
4651	chr5	111563528	111565690	+	0	NA	intron (NM_022140, intron 12 of 22)	intron (NM_022140, intron 12 of 22)	67427	NR_002922	654322	Hs.689709	NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
4605	chr5	5063808	5064601	+	0	NA	intron (NR_026994, intron 4 of 6)	intron (NR_026994, intron 4 of 6)	29732	NR_026994	340094	Hs.665092	NR_026994	ENSG00000215231	LINC01020	-	long intergenic non-protein coding RNA 1020	ncRNA
2032	chr12	15863968	15867245	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	76904	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
3026	chr5	143566763	143571962	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	18925	NM_020768	57528	Hs.661870	XM_005268492		KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
1528	chr9	77991001	77994918	+	0	NA	Intergenic	Intergenic	289561	NM_012383	26578	Hs.494192	NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
653	chr2	72744068	72746483	+	0	NA	intron (NM_015189, intron 8 of 21)	intron (NM_015189, intron 8 of 21)	307902	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
1692	chr1	42326975	42329720	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	56031	NM_024503	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
4866	chr7	93540427	93541713	+	0	NA	TTS (NM_021955)	TTS (NM_021955)	5250	NM_021955	2792	Hs.732212	NM_021955	ENSG00000127928	GNGT1	GNG1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding
2677	chr22	17349680	17351501	+	0	NA	Intergenic	Intergenic	42226	NR_003607	27437	Hs.143955	NR_003607	ENSG00000229027	HSFY1P1	CECR8|HSFYL1|HSFYP1|NCRNA00016	heat shock transcription factor, Y-linked 1 pseudogene 1	pseudo
4273	chr2	239077516	239079149	+	0	NA	TTS (NM_030768)	TTS (NM_030768)	30969	NM_198582	377007	Hs.591595	XM_005246076	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
3064	chr6	85682372	85690344	+	0	NA	Intergenic	Intergenic	-212404	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
509	chr15	45635143	45637405	+	0	NA	Intergenic	AluSx|SINE|Alu	-34624	NR_033252	145663	Hs.729565	NR_033252		GATM-AS1	-	GATM antisense RNA 1	ncRNA
3708	chr11	122289688	122295008	+	0	NA	Intergenic	Intergenic	-218578	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
1015	chr4	41612969	41616376	+	0	NA	promoter-TSS (NM_001112719)	promoter-TSS (NM_001112719)	-117	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
976	chr3	132065275	132066688	+	0	NA	intron (NM_001134194, intron 7 of 10)	MIR3|SINE|MIR	29770	NM_001134194	55	Hs.433060	XM_005247567	ENSG00000014257	ACPP	5'-NT|ACP-3|ACP3|PAP	acid phosphatase, prostate	protein-coding
367	chr12	71556186	71558174	+	0	NA	Intergenic	Intergenic	-5401	NM_004616	7103	Hs.170563	NM_004616	ENSG00000127324	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
1821	chr10	35682202	35686375	+	0	NA	intron (NM_001282853, intron 2 of 10)	MER31A|LTR|ERV1	58486	NM_001282853	219771	Hs.714184	XM_005252387	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
743	chr2	86620284	86621704	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-47277	NM_018433	55818	Hs.557425	NM_001146688	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine (K)-specific demethylase 3A	protein-coding
3589	chr1	209821607	209828217	+	0	NA	promoter-TSS (NM_001017402)	promoter-TSS (NM_001017402)	-233	NM_001017402	3914	Hs.497636	XM_005273124	ENSG00000196878	LAMB3	BM600-125KDA|LAM5|LAMNB1	laminin, beta 3	protein-coding
2265	chr16	80060075	80063278	+	0	NA	Intergenic	MIR|SINE|MIR	232530	NR_104661	101928248	Hs.659802	XR_243479		LOC101928248	-	uncharacterized LOC101928248	ncRNA
2129	chr14	31730381	31734358	+	0	NA	Intergenic	AluSx|SINE|Alu	-55680	NM_015382	25831	Hs.708017	XM_005267502	ENSG00000092148	HECTD1	-	HECT domain containing E3 ubiquitin protein ligase 1	protein-coding
723	chr2	69395351	69398365	+	0	NA	intron (NM_032208, intron 13 of 17)	intron (NM_032208, intron 13 of 17)	66044	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
3597	chr1	220700620	220702721	+	0	NA	5' UTR (NM_001286129, exon 1 of 3)	5' UTR (NM_001286129, exon 1 of 3)	145	NM_001286128	4139	Hs.497806	XM_005273133	ENSG00000116141	MARK1	MARK|Par-1c|Par1c	MAP/microtubule affinity-regulating kinase 1	protein-coding
1040	chr4	24068837	24070819	+	0	NA	Intergenic	L2b|LINE|L2	-178128	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
1755	chr1	185553773	185556640	+	0	NA	Intergenic	LTR22C|LTR|ERVK	-148477	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
488	chr14	100621443	100624083	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	3249	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
1138	chr5	4988086	4991484	+	0	NA	Intergenic	Intergenic	-44687	NR_026994	340094	Hs.665092	NR_026994	ENSG00000215231	LINC01020	-	long intergenic non-protein coding RNA 1020	ncRNA
1012	chr4	41425238	41452235	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	75934	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2182	chr15	33115841	33118893	+	0	NA	intron (NM_001277313, intron 17 of 20)	L2b|LINE|L2	-106301	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
1032	chr4	23291636	23293411	+	0	NA	intron (NR_039674, intron 1 of 2)	intron (NR_039674, intron 1 of 2)	172203	NR_039674	100616252		NR_039674	ENSG00000221466	MIR548AJ2	-	microRNA 548aj-2	ncRNA
4071	chr18	12551347	12553885	+	0	NA	intron (NM_020148, intron 2 of 15)	LTR2|LTR|ERV1	104115	NM_001128627	56907	Hs.515283	XM_005258121	ENSG00000134278	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
152	chr10	61750575	61753743	+	0	NA	Intergenic	Intergenic	-31488	NR_024340	283025	Hs.522955	XR_246084	ENSG00000235931	C10orf40	-	chromosome 10 open reading frame 40	ncRNA
342	chr12	18951077	18952753	+	0	NA	Intergenic	L4|LINE|RTE	60870	NM_033328	93661	Hs.131288	NM_033328	ENSG00000177938	CAPZA3	CAPPA3|Gsg3	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
2931	chr5	44874915	44876835	+	0	NA	Intergenic	LTR78|LTR|ERV1	66848	NM_016640	10884	Hs.124165	NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
3855	chr13	23895052	23896364	+	0	NA	intron (NM_000231, intron 7 of 7)	MER44B|DNA|TcMar-Tigger	53974	NM_001278055	26278	Hs.159492	XM_005266338	ENSG00000151835	SACS	ARSACS|DNAJC29	spastic ataxia of Charlevoix-Saguenay (sacsin)	protein-coding
862	chr20	46549500	46552027	+	0	NA	Intergenic	Intergenic	-61207	NR_109942	101060004	Hs.129970	XR_171074		LOC101060004	-	uncharacterized LOC101060004	ncRNA
1419	chr7	99423992	99428377	+	0	NA	intron (NR_103868, intron 1 of 9)	AluSg|SINE|Alu	548	NM_057096	64816	Hs.728751	NM_001278921	ENSG00000021461	CYP3A43	-	cytochrome P450, family 3, subfamily A, polypeptide 43	protein-coding
4943	chr9	34374773	34377939	+	0	NA	intron (NM_020702, intron 1 of 1)	intron (NM_020702, intron 1 of 1)	538	NM_020702	57462	Hs.522083	NM_020702		KIAA1161	NET37	KIAA1161	protein-coding
341	chr12	16115438	16116573	+	0	NA	intron (NM_015954, intron 5 of 8)	intron (NM_015954, intron 5 of 8)	51819	NM_015954	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding
3586	chr1	209161649	209162853	+	0	NA	Intergenic	Intergenic	-439917	NM_001104548	642587	Hs.510543	XM_005273225		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
2189	chr15	41116734	41119511	+	0	NA	intron (NM_001130143, intron 1 of 4)	intron (NM_001130143, intron 1 of 4)	2785	NM_017726	54866	Hs.192927	XM_005254499	ENSG00000166143	PPP1R14D	CPI17-like|GBPI-1|GBPI1	protein phosphatase 1, regulatory (inhibitor) subunit 14D	protein-coding
2883	chr4	86746699	86750238	+	0	NA	promoter-TSS (NM_001287805)	promoter-TSS (NM_001287805)	-578	NM_001287805	83478	Hs.444229	XM_005263263	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
2287	chr17	8391633	8393171	+	0	NA	intron (NM_001256012, intron 35 of 42)	MLT1F1|LTR|ERVL-MaLR	53232	NM_030808	81565	Hs.740680	XM_005256805	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1-like 1	protein-coding
2540	chr2	183236450	183238570	+	0	NA	intron (NM_001003683, intron 2 of 14)	intron (NM_001003683, intron 2 of 14)	54265	NM_001258313	5136	Hs.742174	XM_005246635	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
2284	chr17	1986224	1989241	+	0	NA	intron (NM_001256827, intron 7 of 11)	intron (NM_001256827, intron 7 of 11)	4323	NM_001282326	23293	Hs.448342	XM_005256569	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
3793	chr12	47770631	47773507	+	0	NA	Intergenic	Intergenic	-161843	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
64	chr1	112944568	112948412	+	0	NA	intron (NM_018704, intron 1 of 5)	intron (NM_018704, intron 1 of 5)	7690	NM_018704	55917	Hs.744100	XM_005271034	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
4085	chr18	46427841	46429393	+	0	NA	Intergenic	Intergenic	40560	NM_001190823	4092	Hs.465087	NM_001190821	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
45	chr1	60598196	60600091	+	0	NA	Intergenic	Intergenic	-59701	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
4426	chr3	45640807	45642673	+	0	NA	intron (NM_014240, intron 1 of 7)	Charlie19a|DNA|hAT-Charlie	5417	NM_014240	8994	Hs.621057	XM_005265529		LIMD1	-	LIM domains containing 1	protein-coding
4172	chr2	53324558	53326484	+	0	NA	Intergenic	Intergenic	-669408	NM_001008708	494143	Hs.585944	XM_005264336	ENSG00000143942	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
4824	chr6	166795082	166797848	+	0	NA	promoter-TSS (NR_073093)	promoter-TSS (NR_073093)	36	NR_073093	51660	Hs.172755	NM_001270879	ENSG00000060762	MPC1	BRP44L|MPYCD|dJ68L15.3	mitochondrial pyruvate carrier 1	protein-coding
1173	chr5	82798627	82800639	+	0	NA	intron (NM_004385, intron 5 of 14)	intron (NM_004385, intron 5 of 14)	32140	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
4656	chr5	123036250	123037122	+	0	NA	Intergenic	Intergenic	155575	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
309	chr11	127895940	127897572	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	495449	NM_005238	2113	Hs.369438	XM_005271428	ENSG00000134954	ETS1	ETS-1|EWSR2	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
1963	chr11	85497137	85500367	+	0	NA	intron (NM_032943, intron 1 of 18)	T-rich|Low_complexity|Low_complexity	23426	NM_032943	54843	Hs.369520	XM_005274057	ENSG00000137501	SYTL2	CHR11SYT|EXO4|SGA72M|SLP2|SLP2A	synaptotagmin-like 2	protein-coding
2085	chr12	132220284	132224464	+	0	NA	intron (NM_001261411, intron 7 of 18)	AT_rich|Low_complexity|Low_complexity	26742	NM_001261411	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
1733	chr1	155010100	155013221	+	0	NA	intron (NM_152494, intron 4 of 16)	L2c|LINE|L2	5378	NM_152494	149095	Hs.567717	XM_005244922	ENSG00000163357	DCST1	-	DC-STAMP domain containing 1	protein-coding
2113	chr13	110441004	110444004	+	0	NA	Intergenic	Intergenic	-3590	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
2153	chr14	85936666	85939359	+	0	NA	Intergenic	Intergenic	-58476	NM_013231	23768	Hs.744139	XM_005267489	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
3383	chr9	118431995	118437806	+	0	NA	Intergenic	MIRc|SINE|MIR	71618	NR_109805	101928775	Hs.522362	XR_242668		LOC101928775	-	uncharacterized LOC101928775	ncRNA
824	chr20	6687498	6697103	+	0	NA	Intergenic	Intergenic	-56445	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
120	chr1	201170381	201176920	+	0	NA	intron (NM_001164586, intron 10 of 23)	intron (NM_001164586, intron 10 of 23)	13697	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
2568	chr2	234651743	234662665	+	0	NA	intron (NM_019093, intron 1 of 4)	intron (NM_019093, intron 1 of 4)	-4543	NM_001001394	414061	Hs.725533	NM_001001394		DNAJB3	HCG3	DnaJ (Hsp40) homolog, subfamily B, member 3	protein-coding
4747	chr6	21742575	21743450	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	76337	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
1148	chr5	31962245	31964429	+	0	NA	intron (NM_178140, intron 1 of 23)	intron (NM_178140, intron 1 of 23)	-27072	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
254	chr11	28674720	28676806	+	0	NA	Intergenic	Intergenic	-176668	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
2386	chr19	43703851	43711350	+	0	NA	intron (NM_002780, intron 2 of 5)	intron (NM_002780, intron 2 of 5)	2326	NM_001276495	5672	Hs.711363	XM_005259069	ENSG00000243137	PSG4	PSG9	pregnancy specific beta-1-glycoprotein 4	protein-coding
2841	chr4	83705685	83708190	+	0	NA	intron (NM_001037582, intron 1 of 4)	intron (NM_001037582, intron 1 of 4)	13073	NM_024906	79966	Hs.379191	NM_001037582	ENSG00000145284	SCD5	ACOD4|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
1321	chr6	82270804	82272706	+	0	NA	Intergenic	Intergenic	190673	NM_017633	55603	Hs.10784	XM_005248731	ENSG00000112773	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
4670	chr5	134470062	134472558	+	0	NA	intron (NM_001277348, intron 2 of 5)	intron (NM_001277348, intron 2 of 5)	-95573	NR_105050	101927953	Hs.436898	XR_246590	ENSG00000249082	LOC101927953	-	uncharacterized LOC101927953	ncRNA
4214	chr2	106777640	106779801	+	0	NA	intron (NM_001253875, intron 4 of 14)	intron (NM_001253875, intron 4 of 14)	-23383	NM_001253876	80146	Hs.743389	NM_001253875	ENSG00000115652	UXS1	SDR6E1|UGD	UDP-glucuronate decarboxylase 1	protein-coding
2442	chr2	27231483	27236756	+	0	NA	intron (NM_012326, intron 1 of 6)	L2c|LINE|L2	-21655	NM_001083590	54867	Hs.533934	XM_005264381	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
3945	chr15	65148129	65150579	+	0	NA	intron (NM_025201, intron 3 of 5)	intron (NM_025201, intron 3 of 5)	15272	NM_025201	80301	Hs.709337	NM_001195059	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing, family O member 2	protein-coding
1987	chr12	74709015	74712481	+	0	NA	Intergenic	Intergenic	-24337	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
4920	chr8	120931732	120932372	+	0	NA	intron (NM_001283012, intron 1 of 6)	intron (NM_001283012, intron 1 of 6)	46157	NM_022783	64798	Hs.112981	XM_005251022	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
4911	chr8	68657814	68659366	+	0	NA	promoter-TSS (NM_020361)	promoter-TSS (NM_020361)	30	NM_020361	57094	Hs.658850	NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
2602	chr20	50525711	50529146	+	0	NA	Intergenic	Intergenic	-47976	NR_110016	101927678	Hs.683840	XR_244196	ENSG00000227964	RP5-1112F19.2	-	uncharacterized LOC101927678	ncRNA
3570	chr1	201566366	201567140	+	0	NA	Intergenic	Intergenic	-50697	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
851	chr20	22847072	22848319	+	0	NA	Intergenic	L1MCa|LINE|L1	-168362	NM_001052	6754	Hs.673846	NM_001052	ENSG00000132671	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
399	chr12	119645756	119647490	+	0	NA	Intergenic	MER126|DNA|DNA	30028	NM_014365	26353	Hs.400095	NM_014365	ENSG00000152137	HSPB8	CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22	heat shock 22kDa protein 8	protein-coding
2296	chr17	31202886	31205100	+	0	NA	promoter-TSS (NM_015194)	promoter-TSS (NM_015194)	-91	NM_015194	4642	Hs.602063	NM_015194	ENSG00000176658	MYO1D	myr4	myosin ID	protein-coding
4964	chr9	100834260	100835677	+	0	NA	intron (NM_018946, intron 2 of 5)	AluSg7|SINE|Alu	16009	NM_018946	54187	Hs.665191	XM_005252053	ENSG00000095380	NANS	SAS	N-acetylneuraminic acid synthase	protein-coding
1811	chr1	243687375	243689926	+	0	NA	intron (NM_005465, intron 11 of 12)	L1MEb|LINE|L1	179172	NR_039824	100616343		NR_039824		MIR4677	-	microRNA 4677	ncRNA
436	chr13	100278244	100280376	+	0	NA	intron (NR_104592, intron 1 of 9)	intron (NR_104592, intron 1 of 9)	-16003	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	ncRNA
4412	chr3	15334109	15334716	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	38721	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	AC087590.3	SH3BP5 antisense RNA 1	ncRNA
213	chr10	107528753	107530351	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-1103578	NR_104028	100505890	Hs.348526	NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
94	chr1	168779654	168781537	+	0	NA	Intergenic	Intergenic	24416	NR_024160	79100	Hs.250624	NR_024160	ENSG00000225826	LINC00626	RP1-10C16.2	long intergenic non-protein coding RNA 626	ncRNA
4818	chr6	154923019	154924543	+	0	NA	Intergenic	Intergenic	-92028	NM_173515	154043	Hs.16064	NM_173515		CNKSR3	MAGI1	CNKSR family member 3	protein-coding
1450	chr8	29440169	29442729	+	0	NA	Intergenic	Intergenic	164176	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
3011	chr5	131674998	131676743	+	0	NA	intron (NM_003059, intron 8 of 9)	intron (NM_003059, intron 8 of 9)	25421	NR_037500	100500865		NR_037500	ENSG00000263597	MIR3936	-	microRNA 3936	ncRNA
568	chr17	68238430	68240172	+	0	NA	Intergenic	Intergenic	73625	NM_000891	3759	Hs.1547	XM_005257332	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
2668	chr21	37848594	37852505	+	0	NA	intron (NM_144492, intron 1 of 2)	intron (NM_144492, intron 1 of 2)	1839	NM_144492	23562	Hs.741857	NM_001146077	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
2863	chr4	24210370	24215321	+	0	NA	Intergenic	MIRc|SINE|MIR	309068	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
3098	chr6	11314420	11320962	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	64890	NM_001142393	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
3250	chr7	68852758	68855097	+	0	NA	Intergenic	Intergenic	208554	NR_108105	100507468	Hs.362492	XR_108828		LOC100507468	-	uncharacterized LOC100507468	ncRNA
2411	chr2	85671464	85675203	+	0	NA	Intergenic	Intergenic	11415	NM_198482	284948	Hs.209542	XM_005264269	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
3905	chr14	85937515	85938643	+	0	NA	Intergenic	Intergenic	-58409	NM_013231	23768	Hs.744139	XM_005267489	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
4334	chr20	30954008	30957827	+	0	NA	intron (NM_015338, intron 2 of 11)	intron (NM_015338, intron 2 of 11)	9770	NM_015338	171023	Hs.374043	NM_001164603	ENSG00000171456	ASXL1	BOPS|MDS	additional sex combs like 1 (Drosophila)	protein-coding
1129	chr5	137150337	137152727	+	0	NA	Intergenic	Intergenic	14650	NR_002713	4888	Hs.643466	NR_002713	ENSG00000226306	NPY6R	NPY1RL|NPY6RP|PP2|Y2B	neuropeptide Y receptor Y6 (pseudogene)	pseudo
1143	chr5	12358036	12360113	+	0	NA	Intergenic	Intergenic	-215895	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
2848	chr4	154055031	154059657	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16926	NM_001130067	23321	Hs.435711	XM_005262872	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
386	chr12	92554098	92555909	+	0	NA	Intergenic	L2a|LINE|L2	-15330	NM_001731	694	Hs.255935	NM_001731		BTG1	-	B-cell translocation gene 1, anti-proliferative	protein-coding
1961	chr11	76771315	76773382	+	0	NA	Intergenic	L1MC4a|LINE|L1	-5644	NM_004055	726	Hs.248153	XM_005274206	ENSG00000149260	CAPN5	HTRA3|nCL-3	calpain 5	protein-coding
1457	chr8	24812639	24814643	+	0	NA	exon (NM_006158, exon 1 of 5)	exon (NM_006158, exon 1 of 5)	742	NM_006158	4747	Hs.521461	NM_006158		NEFL	CMT1F|CMT2E|NF-L|NF68|NFL	neurofilament, light polypeptide	protein-coding
200	chr10	87380574	87382385	+	0	NA	intron (NM_017551, intron 13 of 15)	intron (NM_017551, intron 13 of 15)	43991	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
1261	chr6	4279987	4282089	+	0	NA	Intergenic	Intergenic	144732	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	RP3-400B16.1	-	uncharacterized LOC100507506	ncRNA
1352	chr6	136698381	136700925	+	0	NA	intron (NM_001198616, intron 5 of 16)	intron (NM_001198616, intron 5 of 16)	88360	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
4467	chr3	111455596	111456343	+	0	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	4642	NM_001134437	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
1621	chr1	184942000	184944105	+	0	NA	intron (NM_052966, intron 1 of 13)	CpG	666	NM_052966	116496	Hs.518662	XM_005244873	ENSG00000135842	FAM129A	C1orf24|NIBAN	family with sequence similarity 129, member A	protein-coding
2970	chr5	39398250	39401858	+	0	NA	intron (NM_001244871, intron 1 of 13)	intron (NM_001244871, intron 1 of 13)	25281	NM_001244871	1601	Hs.696631	XM_005248260	ENSG00000153071	DAB2	DOC-2|DOC2	Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)	protein-coding
161	chr10	14446474	14448360	+	0	NA	Intergenic	Intergenic	-31158	NR_031668	100302116		NR_031668	ENSG00000221371	MIR1265	MIRN1265|hsa-mir-1265	microRNA 1265	ncRNA
109	chr1	183752656	183754095	+	0	NA	intron (NM_015149, intron 2 of 18)	intron (NM_015149, intron 2 of 18)	-130927	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
4464	chr3	109403564	109404964	+	0	NA	Intergenic	LTR25|LTR|ERV1	275427	NM_001145553	401082	Hs.477089	NM_001145553		FLJ25363	RP11-702L6.4	uncharacterized LOC401082	ncRNA
2318	chr17	81036196	81039637	+	0	NA	intron (NM_001004431, intron 1 of 3)	CpG-11492	349	NM_001004431	284207	Hs.378821	XM_005256349	ENSG00000176845	METRNL	-	meteorin, glial cell differentiation regulator-like	protein-coding
2651	chr20	61282782	61285297	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	10242	NM_016354	28231	Hs.235782	XM_005260203	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family, member 4A1	protein-coding
2764	chr3	71558084	71561834	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	31281	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284	microRNA 1284	ncRNA
4526	chr4	1185267	1187403	+	0	NA	intron (NM_001199021, intron 1 of 7)	intron (NM_001199021, intron 1 of 7)	16415	NM_001199021	10417	Hs.736956	NM_001128325	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2, extracellular matrix protein	protein-coding
2797	chr3	119894933	119897456	+	0	NA	intron (NM_001168271, intron 7 of 8)	intron (NM_001168271, intron 7 of 8)	66948	NM_001168271	165829	Hs.333358	XM_005247165	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
1556	chrX	9121123	9122736	+	0	NA	Intergenic	MER90a|LTR|ERV1	-120813	NM_205849	171483	Hs.733351	XM_005274456	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9, member B	protein-coding
4800	chr6	119767338	119768028	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	44784	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
3682	chr10	81953977	81958485	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	8016	NM_001278408	311	Hs.530291	XM_005269741	ENSG00000122359	ANXA11	ANX11|CAP50	annexin A11	protein-coding
4593	chr4	185735699	185736916	+	0	NA	intron (NM_001995, intron 1 of 20)	intron (NM_001995, intron 1 of 20)	-2894	NM_001286708	2180	Hs.406678	XM_005262827	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long-chain family member 1	protein-coding
1766	chr1	201593470	201596052	+	0	NA	Intergenic	Intergenic	-22689	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
3378	chr9	110810443	110812747	+	0	NA	Intergenic	Intergenic	-559548	NM_004235	9314	Hs.376206	XM_005252305	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
4034	chr17	25571434	25572873	+	0	NA	Intergenic	Intergenic	48869	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
3982	chr16	23539520	23540159	+	0	NA	intron (NM_001083614, intron 7 of 8)	intron (NM_001083614, intron 7 of 8)	-18024	NM_015044	23062	Hs.460336	NM_015044	ENSG00000103365	GGA2	VEAR	golgi-associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
4454	chr3	102803636	102805726	+	0	NA	Intergenic	MIR|SINE|MIR	650822	NM_175056	131368	Hs.352213	XM_005247110	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
4787	chr6	82406350	82407877	+	0	NA	Intergenic	Intergenic	55315	NM_017633	55603	Hs.10784	XM_005248731	ENSG00000112773	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
3153	chr6	99280679	99283888	+	0	NA	promoter-TSS (NM_005604)	promoter-TSS (NM_005604)	-297	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
911	chr3	183024307	183025711	+	0	NA	intron (NM_015078, intron 10 of 29)	intron (NM_015078, intron 10 of 29)	53977	NM_032047	84002	Hs.718506	XM_005247823	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
2072	chr12	100921455	100923973	+	0	NA	intron (NM_001206978, intron 4 of 9)	intron (NM_001206978, intron 4 of 9)	25576	NM_001206993	9971	Hs.732506	XR_245969	ENSG00000012504	NR1H4	BAR|FXR|HRR-1|HRR1|RIP14	nuclear receptor subfamily 1, group H, member 4	protein-coding
3121	chr6	30672489	30679239	+	0	NA	exon (NM_014641, exon 8 of 15).2	exon (NM_014641, exon 8 of 15).2	9594	NM_014641	9656	Hs.653495	XM_005249492	ENSG00000137337	MDC1	NFBD1	mediator of DNA-damage checkpoint 1	protein-coding
3507	chr1	68178357	68179818	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	28227	NM_001924	1647	Hs.80409	NM_001199741	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
3427	chrX	92927208	92929674	+	0	NA	promoter-TSS (NM_001171111)	promoter-TSS (NM_001171111)	241	NM_004538	4675	Hs.732006	NM_004538	ENSG00000186310	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
2624	chr20	17854140	17857322	+	0	NA	Intergenic	Intergenic	87858	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
4079	chr18	45493885	45496021	+	0	NA	Intergenic	Intergenic	-37436	NM_001003652	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
2965	chr5	32530884	32533267	+	0	NA	Intergenic	MIR3|SINE|MIR	-53530	NM_006713	10923	Hs.229641	XM_005248232	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 homolog (S. cerevisiae)	protein-coding
1157	chr5	53655399	53657244	+	0	NA	Intergenic	Intergenic	-49918	NM_019087	54622	Hs.659125	XM_005248549	ENSG00000185305	ARL15	ARFRP2	ADP-ribosylation factor-like 15	protein-coding
1470	chr8	91704370	91705858	+	0	NA	Intergenic	Intergenic	-46981	NM_001008495	169200	Hs.737401	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
4907	chr8	38623864	38625067	+	0	NA	intron (NM_001146216, intron 1 of 12)	intron (NM_001146216, intron 1 of 12)	-20257	NM_001122824	6867	Hs.279245	XM_005273622	ENSG00000147526	TACC1	Ga55	transforming, acidic coiled-coil containing protein 1	protein-coding
4835	chr7	1619390	1620748	+	0	NA	intron (NR_027328, intron 3 of 3)	intron (NR_027328, intron 3 of 3)	10360	NR_021487	114796	Hs.436146	NR_021487	ENSG00000230487	PSMG3-AS1	AC093734.11	PSMG3 antisense RNA 1 (head to head)	ncRNA
2100	chr13	34609314	34612060	+	0	NA	Intergenic	Intergenic	218481	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
1006	chr4	23789017	23792247	+	0	NA	Intergenic	Intergenic	101068	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
3813	chr12	74793053	74797948	+	0	NA	Intergenic	Intergenic	-109089	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
4531	chr4	15119351	15120611	+	0	NA	Intergenic	Intergenic	115683	NM_001177381	132864	Hs.656937	XM_005248135	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
996	chr3	191458993	191460709	+	0	NA	Intergenic	LTR18B|LTR|ERVL	280899	NM_001083308	152138	Hs.690618	NM_001083308	ENSG00000253548	PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
3005	chr5	124378481	124381179	+	0	NA	intron (NR_109882, intron 2 of 5)	intron (NR_109882, intron 2 of 5)	7306	NR_109882	101927421	Hs.638668	XR_246576		RP11-257I8.2	-	uncharacterized LOC101927421	ncRNA
4596	chr5	82766653	82772983	+	0	NA	intron (NM_004385, intron 1 of 14)	intron (NM_004385, intron 1 of 14)	2325	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
1840	chr10	111836073	111837841	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-68818	NR_038943	100505933	Hs.604103	NR_038943		ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
3656	chr10	29279662	29281018	+	0	NA	Intergenic	Intergenic	145003	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
2069	chr12	93515505	93517627	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	-193459	NM_003566	8411	Hs.567367	NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
956	chr3	99720674	99723194	+	0	NA	intron (NM_001042459, intron 1 of 4)	intron (NM_001042459, intron 1 of 4)	-4875	NR_031662	100313938		NR_031662	ENSG00000221369	MIR548G	MIRN548G|hsa-mir-548g	microRNA 548g	ncRNA
3933	chr15	52552911	52555251	+	0	NA	intron (NM_018728, intron 9 of 40)	intron (NM_018728, intron 9 of 40)	15316	NR_031670	100302202		NR_031670		MIR1266	MIRN1266|hsa-mir-1266	microRNA 1266	ncRNA
629	chr19	29227486	29229078	+	0	NA	Intergenic	Intergenic	-227756	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
4915	chr8	101347788	101349392	+	0	NA	promoter-TSS (NM_001280539)	promoter-TSS (NM_001280539)	-144	NM_001280539	25897	Hs.292882	XM_005250853	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
372	chr12	77111533	77115695	+	0	NA	Intergenic	L1M1|LINE|L1	-44240	NM_015336	23390	Hs.4014	XM_005268749	ENSG00000186908	ZDHHC17	HIP14|HIP3|HYPH	zinc finger, DHHC-type containing 17	protein-coding
4525	chr4	1075033	1077228	+	0	NA	intron (NM_001131034, intron 5 of 9)	intron (NM_001131034, intron 5 of 9)	31222	NM_001193318	285498	Hs.248290	XM_005272274	ENSG00000178222	RNF212	ZHP3	ring finger protein 212	protein-coding
2951	chr5	153646131	153649413	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	77477	NM_198321	55568	Hs.631797	XM_005268478	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)	protein-coding
3204	chr7	12172463	12174428	+	0	NA	Intergenic	L2a|LINE|L2	-77403	NM_001134232	54664	Hs.396358	XM_005249789		TMEM106B	-	transmembrane protein 106B	protein-coding
4771	chr6	41700568	41703597	+	0	NA	promoter-TSS (NM_001271945)	promoter-TSS (NM_001271945)	57	NM_001271945	7942	Hs.485360	XM_005249410	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
1284	chr6	21941542	21944793	+	0	NA	intron (NR_015410, intron 5 of 11)	intron (NR_015410, intron 5 of 11)	204255	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
1330	chr6	111978501	111980416	+	0	NA	Intergenic	AluSc|SINE|Alu	-51981	NM_147686	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
1661	chr1	207917400	207933638	+	0	NA	5' UTR (NM_153826, exon 1 of 12)	5' UTR (NM_153826, exon 1 of 12)	136	NM_172353	4179	Hs.510402	NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
3041	chr5	173835228	173843507	+	0	NA	Intergenic	Intergenic	-312208	NM_002449	4488	Hs.89404	NM_002449	ENSG00000120149	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
4935	chr9	693160	694001	+	0	NA	intron (NM_001256876, intron 6 of 15)	intron (NM_001256876, intron 6 of 15)	-13226	NM_153186	23189	Hs.306764	XM_005251410	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
3526	chr1	151511328	151515848	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	807	NM_020127	7286	Hs.489922	XM_005245474	ENSG00000143367	TUFT1	-	tuftelin 1	protein-coding
3772	chr12	8769817	8772990	+	0	NA	Intergenic	L1MA9|LINE|L1	-5961	NM_020661	57379	Hs.149342	XM_005253432	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation-induced cytidine deaminase	protein-coding
1160	chr5	54184993	54187011	+	0	NA	Intergenic	Intergenic	95412	NM_007036	11082	Hs.129944	NM_001135604	ENSG00000164283	ESM1	endocan	endothelial cell-specific molecule 1	protein-coding
869	chr20	62818758	62822821	+	0	NA	intron (NM_004535, intron 1 of 22)	intron (NM_004535, intron 1 of 22)	24962	NM_004535	4661	Hs.279562	NM_004535	ENSG00000196132	MYT1	C20orf36|MTF1|MYTI|PLPB1|ZC2HC4A	myelin transcription factor 1	protein-coding
1592	chrX	106022510	106025326	+	0	NA	intron (NM_194463, intron 2 of 6)	intron (NM_194463, intron 2 of 6)	-22001	NM_198881	54885	Hs.351798	NM_017752	ENSG00000133138	TBC1D8B	-	TBC1 domain family, member 8B (with GRAM domain)	protein-coding
4114	chr19	43526371	43527465	+	0	NA	intron (NM_001113410, intron 1 of 4)	intron (NM_001113410, intron 1 of 4)	3713	NM_002785	5680	Hs.741150	XM_005259080	ENSG00000243130	PSG11	PSBG-11|PSBG-13|PSG13|PSG14	pregnancy specific beta-1-glycoprotein 11	protein-coding
5005	chrX	43719771	43721569	+	0	NA	intron (NM_000898, intron 1 of 14)	intron (NM_000898, intron 1 of 14)	21051	NM_000898	4129	Hs.654473	XM_005272606	ENSG00000069535	MAOB	-	monoamine oxidase B	protein-coding
2997	chr5	111673478	111675153	+	0	NA	intron (NM_022140, intron 1 of 22)	L2a|LINE|L2	80695	NM_022140	64097	Hs.584954	XM_005272043	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
4888	chr7	134275796	134282366	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	45232	NM_001080538	441282	Hs.729418	XM_005250364	ENSG00000227471	AKR1B15	AKR1B10L	aldo-keto reductase family 1, member B15	protein-coding
1697	chr1	47718545	47721390	+	0	NA	intron (NM_001048166, intron 16 of 16)	intron (NM_001048166, intron 16 of 16)	-22580	NM_001287347	6886	Hs.737706	XM_005271158	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	T-cell acute lymphocytic leukemia 1	protein-coding
3828	chr12	100922736	100923391	+	0	NA	intron (NM_001206978, intron 4 of 9)	L2c|LINE|L2	25925	NM_001206993	9971	Hs.732506	XR_245969	ENSG00000012504	NR1H4	BAR|FXR|HRR-1|HRR1|RIP14	nuclear receptor subfamily 1, group H, member 4	protein-coding
1770	chr1	203661159	203663790	+	0	NA	intron (NM_001001396, intron 2 of 21)	intron (NM_001001396, intron 2 of 21)	-36235	NR_003019	677843	Hs.676135	NR_003019		SNORA77	ACA63	small nucleolar RNA, H/ACA box 77	snoRNA
4494	chr3	152103755	152104445	+	0	NA	intron (NM_207293, intron 1 of 8)	intron (NM_207293, intron 1 of 8)	-45321	NM_001123228	645843	Hs.632562	NM_001123228	ENSG00000221962	TMEM14E	-	transmembrane protein 14E	protein-coding
2735	chr3	17425217	17427864	+	0	NA	intron (NM_001134381, intron 9 of 23)	MIR|SINE|MIR	314972	NM_001134381	9779	Hs.475629	XM_005265611	ENSG00000131374	TBC1D5	-	TBC1 domain family, member 5	protein-coding
1209	chr5	144623619	144625384	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	590431	NM_138492	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
991	chr3	183265170	183267205	+	0	NA	intron (NM_130446, intron 1 of 6)	intron (NM_130446, intron 1 of 6)	7312	NM_130446	89857	Hs.659147	NM_130446	ENSG00000172578	KLHL6	-	kelch-like family member 6	protein-coding
4773	chr6	43960320	43961082	+	0	NA	Intergenic	MIRb|SINE|MIR	-7636	NM_001171992	221416	Hs.531926	NM_001171992	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
3535	chr1	155011067	155012158	+	0	NA	intron (NM_152494, intron 4 of 16)	intron (NM_152494, intron 4 of 16)	5330	NM_152494	149095	Hs.567717	XM_005244922	ENSG00000163357	DCST1	-	DC-STAMP domain containing 1	protein-coding
931	chr3	29527000	29529286	+	0	NA	intron (NM_001003792, intron 2 of 13)	intron (NM_001003792, intron 2 of 13)	205340	NM_001177711	27303	Hs.221436	XM_005265060	ENSG00000144642	RBMS3	-	RNA binding motif, single stranded interacting protein 3	protein-coding
2348	chr18	46186667	46191131	+	0	NA	intron (NM_014772, intron 3 of 11)	intron (NM_014772, intron 3 of 11)	-8072	NR_039897	100616366		NR_039897		MIR4743	-	microRNA 4743	ncRNA
615	chr18	33084861	33087526	+	0	NA	Intergenic	L1ME3A|LINE|L1	-8238	NM_194281	125476	Hs.464903	XM_005258195	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
2246	chr16	23538745	23541041	+	0	NA	intron (NM_001083614, intron 7 of 8)	intron (NM_001083614, intron 7 of 8)	-18078	NM_015044	23062	Hs.460336	NM_015044	ENSG00000103365	GGA2	VEAR	golgi-associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
476	chr14	75648977	75651233	+	0	NA	Intergenic	Intergenic	-6756	NM_006827	10972	Hs.74137	XM_005267284	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23	transmembrane emp24-like trafficking protein 10 (yeast)	protein-coding
4505	chr3	190303143	190304992	+	0	NA	intron (NM_134470, intron 3 of 8)	L2c|LINE|L2	72227	NM_001167931	3556	Hs.478673	XM_005247433	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
1198	chr5	127169171	127170941	+	0	NA	Intergenic	MER34A1|LTR|ERV1	181349	NM_001127385	613212	Hs.66194	NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
3319	chr8	137456967	137458923	+	0	NA	Intergenic	Intergenic	988229	NM_006558	10656	Hs.444558	XM_005250757	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
3755	chr12	74710507	74711154	+	0	NA	Intergenic	Intergenic	-24419	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
1626	chr1	21657825	21667555	+	0	NA	intron (NM_001113348, intron 1 of 18)	AluJo|SINE|Alu	9344	NM_001113348	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
2219	chr15	79004577	79009397	+	0	NA	Intergenic	Intergenic	-37392	NR_036495	646938	Hs.449783	NR_036495	ENSG00000238166	LOC646938	-	TBC1 domain family, member 2B pseudogene	pseudo
2141	chr14	54307171	54311776	+	0	NA	Intergenic	Intergenic	105729	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
1077	chr4	66526133	66529018	+	0	NA	intron (NM_001281767, intron 1 of 16)	intron (NM_001281767, intron 1 of 16)	-8104	NR_034138	100144602	Hs.201854	NR_034138	ENSG00000250846	RP11-807H7.1	-	uncharacterized LOC100144602	ncRNA
2464	chr2	56005915	56009036	+	0	NA	Intergenic	L2b|LINE|L2	-86430	NM_033109	87178	Hs.388733	XM_005264629	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
2854	chr4	176339135	176343897	+	0	NA	Intergenic	Intergenic	367311	NM_001261448	2823	Hs.75819	NM_001261447	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
1299	chr6	38179668	38181805	+	0	NA	intron (NM_152733, intron 8 of 9)	intron (NM_152733, intron 8 of 9)	383107	NM_001172418	114781	Hs.603858	XM_005248840	ENSG00000183826	BTBD9	dJ322I12.1	BTB (POZ) domain containing 9	protein-coding
1781	chr1	210012107	210014487	+	0	NA	intron (NM_014388, intron 7 of 11)	L2b|LINE|L2	11985	NM_014388	27042	Hs.194754	NM_014388	ENSG00000117597	DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding
967	chr3	119871692	119872736	+	0	NA	Intergenic	MER126|DNA|DNA	-58950	NM_002093	2932	Hs.445733	NM_001146156	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
1611	chrX	146261721	146266597	+	0	NA	Intergenic	Intergenic	48202	NR_030233	574511		NR_030233	ENSG00000207731	MIR506	MIRN506|hsa-mir-506	microRNA 506	ncRNA
2157	chr14	92300827	92305053	+	0	NA	promoter-TSS (NM_001128595)	promoter-TSS (NM_001128595)	-70	NM_152332	123036	Hs.510262	XM_005267339	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|Tac2-N	tandem C2 domains, nuclear	protein-coding
322	chr12	67927640	67929252	+	0	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	14584	NR_103861	100507175	Hs.730491	NR_103861	ENSG00000203585	RP11-542B15.1	-	uncharacterized LOC100507175	ncRNA
3046	chr6	136826444	136852795	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	7732	NM_001198611	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
575	chr17	12132870	12136131	+	0	NA	Intergenic	MIR|SINE|MIR	149284	NR_030613	100126313		NR_030613		MIR744	MIRN744|hsa-mir-744	microRNA 744	ncRNA
1835	chr10	79116087	79118515	+	0	NA	intron (NM_001271518, intron 1 of 27)	intron (NM_001271518, intron 1 of 27)	280276	NM_001271519	3778	Hs.144795	XM_005269773	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
4101	chr19	1566541	1568390	+	0	NA	exon (NM_203304, exon 1 of 2)	exon (NM_203304, exon 1 of 2)	592	NM_203304	399664	Hs.436495	XM_005276646	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
3850	chr13	48282793	48283754	+	0	NA	Intergenic	Intergenic	292189	NM_003850	8803	Hs.743361	XM_005266579	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
4886	chr7	130919027	130921572	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	-92296	NM_013255	4289	Hs.44693	XM_005250355	ENSG00000128585	MKLN1	TWA2	muskelin 1, intracellular mediator containing kelch motifs	protein-coding
699	chr2	31920389	31921865	+	0	NA	Intergenic	Intergenic	-115087	NM_000348	6716	Hs.458345	NM_000348		SRD5A2	-	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	protein-coding
960	chr3	110307776	110309276	+	0	NA	Intergenic	Intergenic	480280	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	RP11-553A10.2	PVRL3 antisense RNA 1	ncRNA
818	chr20	1238392	1241149	+	0	NA	Intergenic	L1M4|LINE|L1	-7190	NM_014723	9751	Hs.323833	XM_005260888	ENSG00000101298	SNPH	bA314N13.5	syntaphilin	protein-coding
1038	chr4	23872417	23874000	+	0	NA	intron (NM_013261, intron 2 of 12)	intron (NM_013261, intron 2 of 12)	18492	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
2363	chr18	70126830	70129443	+	0	NA	Intergenic	Intergenic	83587	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
2908	chr4	147162009	147163928	+	0	NA	Intergenic	Intergenic	66133	NM_007080	11157	Hs.190520	NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
3088	chr6	4316737	4318471	+	0	NA	Intergenic	Intergenic	181298	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	RP3-400B16.1	-	uncharacterized LOC100507506	ncRNA
1777	chr1	209161360	209162967	+	0	NA	Intergenic	Intergenic	-440005	NM_001104548	642587	Hs.510543	XM_005273225		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
354	chr12	44919230	44920699	+	0	NA	intron (NM_001145107, intron 17 of 20)	L2b|LINE|L2	349480	NM_001145109	4753	Hs.505326	XM_005268905	ENSG00000184613	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
4483	chr3	122888139	122889031	+	0	NA	Intergenic	Intergenic	7944	NR_106960	102465667		NR_106960		MIR7110	hsa-mir-7110	microRNA mir-7110	ncRNA
3878	chr14	85997872	86000852	+	0	NA	intron (NM_013231, intron 1 of 1)	intron (NM_013231, intron 1 of 1)	2874	NM_013231	23768	Hs.744139	XM_005267489	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
1064	chr4	41590727	41594538	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-22157	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4758	chr6	28533567	28534738	+	0	NA	Intergenic	LTR2C|LTR|ERV1	20960	NM_052923	114821	Hs.176980	NM_052923	ENSG00000232040	SCAND3	Buster4|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
4225	chr2	134178294	134180145	+	0	NA	intron (NR_107007, intron 1 of 6)	intron (NR_107007, intron 1 of 6)	16993	NR_107007	102466866		NR_107007		MIR7853	hsa-mir-7853	microRNA mir-7853	ncRNA
2734	chr3	16554136	16555878	+	0	NA	5' UTR (NM_015150, exon 1 of 10)	5' UTR (NM_015150, exon 1 of 10)	215	NM_015150	23180	Hs.98910	XM_005264985	ENSG00000131378	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
1217	chr5	151492133	151493378	+	0	NA	intron (NR_109876, intron 1 of 2)	intron (NR_109876, intron 1 of 2)	154296	NR_109876	101927115	Hs.549665	XR_245879	ENSG00000254226	CTB-12O2.1	-	uncharacterized LOC101927115	ncRNA
3240	chr7	38884260	38887137	+	0	NA	intron (NM_014396, intron 4 of 28)	intron (NM_014396, intron 4 of 28)	63102	NM_080631	27072	Hs.592184	NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|hVps41p	vacuolar protein sorting 41 homolog (S. cerevisiae)	protein-coding
3288	chr7	150734737	150738638	+	0	NA	intron (NM_001282291, intron 10 of 16)	intron (NM_001282291, intron 10 of 16)	-8692	NM_004769	9311	Hs.647113	XR_242198	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid-sensing (proton-gated) ion channel 3	protein-coding
2750	chr3	52482768	52485898	+	0	NA	TTS (NM_003280)	TTS (NM_003280)	3724	NM_003280	7134	Hs.118845	NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C type 1 (slow)	protein-coding
4165	chr2	37915785	37916724	+	0	NA	Intergenic	Intergenic	-16576	NM_001270436	10602	Hs.369574	NM_001270436	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
2527	chr2	151767825	151769400	+	0	NA	Intergenic	Intergenic	283201	NR_110245	101929282	Hs.126866	XR_241329		AC104777.4	-	uncharacterized LOC101929282	ncRNA
1850	chr10	14782890	14786929	+	0	NA	intron (NM_001282695, intron 1 of 5)	L2c|LINE|L2	31987	NM_031453	83641	Hs.446315	XM_005252614	ENSG00000065809	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
1346	chr6	127037716	127039169	+	0	NA	Intergenic	Intergenic	377507	NM_001286525	387103	Hs.486401	XM_005266966	ENSG00000203760	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
1964	chr11	94335136	94337237	+	0	NA	intron (NM_152431, intron 12 of 19)	intron (NM_152431, intron 12 of 19)	35712	NM_152431	143689	Hs.660188	XM_005273778	ENSG00000134627	PIWIL4	HIWI2|MIWI2	piwi-like RNA-mediated gene silencing 4	protein-coding
3396	chr9	133655137	133658409	+	0	NA	intron (NM_007313, intron 1 of 10)	intron (NM_007313, intron 1 of 10)	-54058	NM_005157	25	Hs.431048	XM_005272177	ENSG00000097007	ABL1	ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding
4768	chr6	37212655	37213353	+	0	NA	intron (NM_145316, intron 1 of 3)	intron (NM_145316, intron 1 of 3)	12409	NM_145316	221468	Hs.520101	XM_005248907	ENSG00000172738	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
2818	chr3	181809598	181811557	+	0	NA	Intergenic	Intergenic	140425	NR_104146	100996490	Hs.636150	XR_158779	ENSG00000242512	RP11-416O18.1	-	uncharacterized LOC100996490	ncRNA
2424	chr2	234663095	234674344	+	0	NA	promoter-TSS (NM_000463)	promoter-TSS (NM_000463)	-200	NM_000463	54658	Hs.554822	NM_000463	ENSG00000242366	UGT1A1	BILIQTL1|GNT1|HUG-BR1|UDPGT|UDPGT 1-1|UGT1|UGT1A	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding
1004	chr4	16251155	16253526	+	0	NA	intron (NR_027697, intron 2 of 2)	intron (NR_027697, intron 2 of 2)	24054	NR_027697	202020	Hs.445315	NM_152684	ENSG00000263327	TAPT1-AS1	RP11-783N5.1	TAPT1 antisense RNA 1 (head to head)	ncRNA
891	chr22	41237067	41239482	+	0	NA	intron (NM_001278589, intron 4 of 11)	L1MEd|LINE|L1	14738	NM_003932	6767	Hs.712713	NM_001278589	ENSG00000100380	ST13	AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6	suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)	protein-coding
3471	chr1	7395313	7396651	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-435347	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
2106	chr13	66885853	66888084	+	0	NA	intron (NM_020403, intron 3 of 3)	intron (NM_020403, intron 3 of 3)	-512333	NR_046527	100874064	Hs.569284	XR_245370	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
1013	chr4	41482073	41484486	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	120477	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
1693	chr1	44046670	44049222	+	0	NA	intron (NM_130440, intron 7 of 32)	intron (NM_130440, intron 7 of 32)	51399	NM_130440	5792	Hs.272062	XM_005271078	ENSG00000142949	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
316	chr12	20582016	20595665	+	0	NA	intron (NM_000921, intron 1 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	66661	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
4549	chr4	77221826	77223323	+	0	NA	intron (NM_001242939, intron 6 of 6)	L1ME5|LINE|L1	-4605	NM_003943	8987	Hs.109590	NM_003943	ENSG00000118804	STBD1	GENEX3414	starch binding domain 1	protein-coding
1806	chr1	234657064	234660816	+	0	NA	Intergenic	Intergenic	8585	NR_038426	100506795	Hs.448989	XR_247017	ENSG00000231768	RP5-855F14.1	-	uncharacterized LOC100506795	ncRNA
4013	chr17	28703225	28704841	+	0	NA	Intergenic	Intergenic	-1909	NM_001304	1362	Hs.446079	NM_001199775	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
1738	chr1	169028125	169031079	+	0	NA	intron (NR_104091, intron 2 of 4)	intron (NR_104091, intron 2 of 4)	26641	NR_104091	101978719	Hs.517849	NR_104091		LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
2025	chr12	12037223	12040036	+	0	NA	intron (NM_001987, intron 6 of 7)	intron (NM_001987, intron 6 of 7)	40478	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19P	RNU6-19	RNA, U6 small nuclear 19, pseudogene	snRNA
1370	chr6	150159495	150163003	+	0	NA	intron (NM_032832, intron 3 of 6)	intron (NM_032832, intron 3 of 6)	-23385	NR_045126	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1|RP11-244K5.1	RAET1E antisense RNA 1	ncRNA
4251	chr2	216942649	216944494	+	0	NA	intron (NM_018441, intron 1 of 7)	intron (NM_018441, intron 1 of 7)	2968	NM_018441	55825	Hs.281680	NM_018441	ENSG00000115425	PECR	DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
3920	chr15	29862141	29863043	+	0	NA	intron (NM_015307, intron 1 of 10)	CpG	335	NM_015307	23359	Hs.383564	XM_005254261	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
4809	chr6	138482305	138483919	+	0	NA	promoter-TSS (NM_020340)	promoter-TSS (NM_020340)	59	NM_020340	57221	Hs.194408	NM_020340	ENSG00000112379	KIAA1244	A7322|ARFGEF3|BIG3|C6orf92|PPP1R33|dJ171N11.1	KIAA1244	protein-coding
2649	chr20	56321033	56326049	+	0	NA	Intergenic	Intergenic	-36949	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
3668	chr10	65471002	65473985	+	0	NA	Intergenic	Intergenic	191370	NM_001001330	221035	Hs.499833	XM_005269620	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
3804	chr12	58729964	58731841	+	0	NA	Intergenic	L2b|LINE|L2	395457	NM_033276	91419	Hs.61188	XM_005269223	ENSG00000166896	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
511	chr15	46146880	46149436	+	0	NA	Intergenic	Intergenic	221220	NM_021199	58472	Hs.743355	XM_005254571	ENSG00000137767	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
2367	chr19	29486917	29493983	+	0	NA	Intergenic	MIRc|SINE|MIR	-3012	NR_040036	100505835	Hs.176539	NR_040036	ENSG00000267014	LOC100505835	-	uncharacterized LOC100505835	ncRNA
899	chr3	192674484	192676498	+	0	NA	Intergenic	MIR|SINE|MIR	-39541	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
3259	chr7	93538612	93546420	+	0	NA	Intergenic	Intergenic	6696	NM_021955	2792	Hs.732212	NM_021955	ENSG00000127928	GNGT1	GNG1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding
3443	chrY	20140300	20143097	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	4030	NM_001001722	203611	Hs.532657	NM_001001722	ENSG00000129873	CDY2B	CDY	chromodomain protein, Y-linked, 2B	protein-coding
2437	chr2	19504613	19506351	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-42708	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
3573	chr1	201655431	201656613	+	0	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	-32614	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
2689	chr22	19271816	19280256	+	0	NA	intron (NM_007098, intron 1 of 32)	MIR|SINE|MIR	3203	NM_007098	8218	Hs.368266	XM_005261278	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin, heavy chain-like 1	protein-coding
3131	chr6	46458314	46460051	+	0	NA	promoter-TSS (NM_001251974)	promoter-TSS (NM_001251974)	-122	NM_001251974	10231	Hs.710016	XM_005248782	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
3765	chr12	88194944	88197717	+	0	NA	Intergenic	Intergenic	-17842	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
4254	chr2	218195519	218197477	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	424818	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
1979	chr11	123322965	123327413	+	0	NA	Intergenic	Intergenic	-71155	NM_020716	57476	Hs.732509	XM_005271619	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
3066	chr6	85833717	85837520	+	0	NA	Intergenic	MIRb|SINE|MIR	-323684	NM_001204813	4907	Hs.153952	NM_001204813	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
2485	chr2	72969313	72973865	+	0	NA	intron (NM_015189, intron 1 of 21)	intron (NM_015189, intron 1 of 21)	81588	NM_015189	23233	Hs.303454	XM_005264223	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
1948	chr11	28853456	28862076	+	0	NA	Intergenic	Intergenic	-358671	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
795	chr2	218857921	218859944	+	0	NA	Intergenic	Intergenic	-40725	NR_034176	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
4402	chr3	109114601	109117898	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12588	NR_109842	401082	Hs.477089	NM_001145553		FLJ25363	RP11-702L6.4	uncharacterized LOC401082	ncRNA
794	chr2	218547683	218551733	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	71608	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
1609	chrX	142086031	142087691	+	0	NA	Intergenic	Intergenic	-26843	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	SPANX family, member N4	protein-coding
4983	chr9	123450471	123453205	+	0	NA	intron (NM_001080497, intron 1 of 5)	L2c|LINE|L2	24927	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF-like-domains 9	protein-coding
4853	chr7	31922985	31923948	+	0	NA	intron (NM_001191058, intron 3 of 18)	intron (NM_001191058, intron 3 of 18)	187000	NM_001191057	5137	Hs.728862	XM_005249766	ENSG00000154678	PDE1C	Hcam3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
944	chr3	55236033	55237897	+	0	NA	Intergenic	Intergenic	-274893	NM_020678	57408	Hs.591668	XM_005265337	ENSG00000144771	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
1780	chr1	209819687	209828316	+	0	NA	intron (NM_001017402, intron 1 of 21)	intron (NM_001017402, intron 1 of 21)	678	NM_001017402	3914	Hs.497636	XM_005273124	ENSG00000196878	LAMB3	BM600-125KDA|LAM5|LAMNB1	laminin, beta 3	protein-coding
1113	chr4	166142457	166144934	+	0	NA	intron (NM_001161522, intron 2 of 13)	intron (NM_001161522, intron 2 of 13)	12524	NM_001161522	11275	Hs.388668	XM_005262709	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch-like family member 2	protein-coding
674	chr2	1634782	1638218	+	0	NA	3' UTR (NM_012293, exon 23 of 23)	3' UTR (NM_012293, exon 23 of 23)	111791	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
3405	chrX	64814796	64817024	+	0	NA	Intergenic	MIR3|SINE|MIR	-43609	NR_033742	83957	Hs.652967	NR_033742	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
4470	chr3	111583030	111584261	+	0	NA	intron (NM_001134439, intron 1 of 17)	intron (NM_001134439, intron 1 of 17)	5077	NM_001134439	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
1317	chr6	80173085	80175918	+	0	NA	Intergenic	L2a|LINE|L2	72646	NM_181714	167691	Hs.21945	XM_005248664	ENSG00000135338	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
957	chr3	100795957	100797443	+	0	NA	Intergenic	Intergenic	-84366	NM_015429	25890	Hs.477015	XM_005247281	ENSG00000154175	ABI3BP	NESHBP|TARSH	ABI family, member 3 (NESH) binding protein	protein-coding
2430	chr2	1628434	1630474	+	0	NA	Intergenic	Intergenic	118837	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
2596	chr20	34355717	34358511	+	0	NA	Intergenic	Intergenic	-2809	NM_016436	51230	Hs.517044	XM_005260420	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
2943	chr5	121516436	121520221	+	0	NA	TTS (NM_001195535)	TTS (NM_001195535)	22457	NM_001195535	100505841	Hs.733368	NM_001195535		LOC100505841	-	zinc finger protein 474-like	protein-coding
3996	chr16	58298619	58299419	+	0	NA	intron (NM_001142302, intron 5 of 7)	intron (NM_001142302, intron 5 of 7)	15179	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
1503	chr9	128301574	128303644	+	0	NA	intron (NM_001006618, intron 7 of 7)	intron (NM_001006618, intron 7 of 7)	166904	NM_001006619	79109	Hs.495138	XM_005252203	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
4543	chr4	41507291	41507959	+	0	NA	intron (NM_014988, intron 2 of 26)	intron (NM_014988, intron 2 of 26)	-107164	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2512	chr2	114575308	114577117	+	0	NA	Intergenic	MER76|LTR|ERVL	-61812	NM_025181	80255	Hs.632527	XM_005263799	ENSG00000115084	SLC35F5	-	solute carrier family 35, member F5	protein-coding
502	chr15	38823063	38824452	+	0	NA	intron (NM_005739, intron 2 of 16)	intron (NM_005739, intron 2 of 16)	33250	NM_005739	10125	Hs.591127	XM_005254113	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
314	chr12	20067355	20070785	+	0	NA	Intergenic	Intergenic	-98549	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
1286	chr6	22025282	22026828	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	121367	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
1796	chr1	227062244	227064832	+	0	NA	intron (NM_000447, intron 3 of 12)	intron (NM_000447, intron 3 of 12)	5265	NM_000447	5664	Hs.25363	XM_005273198	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
4744	chr6	13485833	13488580	+	0	NA	promoter-TSS (NM_001242628)	promoter-TSS (NM_001242628)	663	NM_018988	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
3385	chr9	123424461	123427283	+	0	NA	intron (NM_001080497, intron 1 of 5)	intron (NM_001080497, intron 1 of 5)	50893	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF-like-domains 9	protein-coding
2998	chr5	112822858	112825943	+	0	NA	5' UTR (NM_001085377, exon 1 of 19)	5' UTR (NM_001085377, exon 1 of 19)	127	NM_001085377	4163	Hs.593171	XM_005271991	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding
2638	chr20	39317096	39319465	+	0	NA	promoter-TSS (NM_005461)	promoter-TSS (NM_005461)	-400	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
355	chr12	47851504	47853105	+	0	NA	Intergenic	Intergenic	-242078	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
553	chr16	65842627	65845116	+	0	NA	Intergenic	Intergenic	-233668	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
2058	chr12	58730397	58732910	+	0	NA	Intergenic	Intergenic	396208	NM_033276	91419	Hs.61188	XM_005269223	ENSG00000166896	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
3546	chr1	171881041	171883791	+	0	NA	intron (NM_015569, intron 1 of 20)	intron (NM_015569, intron 1 of 20)	71798	NM_001136127	26052	Hs.654775	XM_005245079	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
1252	chr6	136821846	136825119	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	23869	NM_001198611	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
555	chr16	65992976	65994397	+	0	NA	Intergenic	Intergenic	-383483	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
2643	chr20	45441776	45444951	+	0	NA	Intergenic	Intergenic	-79900	NM_005244	2139	Hs.722416	XM_005260327	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
2877	chr4	77510099	77512574	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	16615	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
1037	chr4	23856266	23860544	+	0	NA	intron (NM_013261, intron 2 of 12)	intron (NM_013261, intron 2 of 12)	33295	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
4164	chr2	37895402	37896071	+	0	NA	intron (NM_001270436, intron 1 of 1)	intron (NM_001270436, intron 1 of 1)	3606	NM_006449	10602	Hs.369574	NM_001270436	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
3328	chr9	85833495	85836134	+	0	NA	Intergenic	Intergenic	47388	NM_001244962	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
195	chr10	85371236	85372702	+	0	NA	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	-527216	NM_014394	27069	Hs.352656	XM_005269699	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
2005	chr12	58816679	58821776	+	0	NA	Intergenic	Intergenic	483782	NM_033276	91419	Hs.61188	XM_005269223	ENSG00000166896	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
2828	chr4	69597184	69601428	+	0	NA	Intergenic	L1M3f|LINE|L1	-62812	NM_001076	7366	Hs.150207	NM_001076	ENSG00000196620	UGT2B15	HLUG4|UDPGT 2B8|UDPGT2B15|UDPGTH3|UGT2B8	UDP glucuronosyltransferase 2 family, polypeptide B15	protein-coding
679	chr2	6325718	6327758	+	0	NA	Intergenic	MIR3|SINE|MIR	188816	NR_110251	101929390	Hs.434407	XR_241258	ENSG00000227007	AC105253.1	-	uncharacterized LOC101929390	ncRNA
831	chr20	10105576	10107858	+	0	NA	intron (NR_040710, intron 2 of 4)	intron (NR_040710, intron 2 of 4)	91020	NM_198798	63926	Hs.70903	XM_005260792	ENSG00000132623	ANKEF1	ANKRD5|dJ839B4.6	ankyrin repeat and EF-hand domain containing 1	protein-coding
5013	chrX	100227962	100229275	+	0	NA	intron (NR_103708, intron 1 of 8)	intron (NR_103708, intron 1 of 8)	3921	NR_103708	392509	Hs.147237	NM_001162491	ENSG00000174225	ARL13A	ARL13|dJ341D10.2	ADP-ribosylation factor-like 13A	protein-coding
1960	chr11	74081745	74083935	+	0	NA	exon (NM_173582, exon 3 of 14)	exon (NM_173582, exon 3 of 14)	26662	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
2355	chr18	51779606	51782188	+	0	NA	Intergenic	Intergenic	-14952	NM_007195	11201	Hs.438533	XM_005258188	ENSG00000101751	POLI	RAD30B|RAD3OB	polymerase (DNA directed) iota	protein-coding
1241	chr6	11597901	11600000	+	0	NA	Intergenic	MER31B|LTR|ERV1	60490	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
647	chr19	43239085	43242974	+	0	NA	intron (NM_021016, intron 2 of 6)	intron (NM_021016, intron 2 of 6)	3639	NM_021016	5671	Hs.654413	XM_005259068	ENSG00000221826	PSG3	-	pregnancy specific beta-1-glycoprotein 3	protein-coding
1441	chr7	137626695	137629302	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	-10096	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
4753	chr6	22826572	22829540	+	0	NA	Intergenic	Intergenic	258378	NM_138574	154150	Hs.629246	NM_138574	ENSG00000112273	HDGFL1	PWWP1|dJ309H15.1	hepatoma derived growth factor-like 1	protein-coding
1206	chr5	143584102	143586846	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	35037	NM_020768	57528	Hs.661870	XM_005268492		KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
4368	chr21	36628312	36630287	+	0	NA	Intergenic	Intergenic	-207704	NM_001754	861	Hs.612648	XM_005261067	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
1027	chr4	16254494	16256339	+	0	NA	intron (NR_027697, intron 2 of 2)	intron (NR_027697, intron 2 of 2)	27130	NR_027697	202020	Hs.445315	NM_152684	ENSG00000263327	TAPT1-AS1	RP11-783N5.1	TAPT1 antisense RNA 1 (head to head)	ncRNA
423	chr13	43468185	43469875	+	0	NA	intron (NM_001002264, intron 11 of 12)	intron (NM_001002264, intron 11 of 12)	97377	NM_001002264	94240	Hs.546467	XM_005266596	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1 (breast)	protein-coding
1953	chr11	58327964	58330824	+	0	NA	intron (NM_001143995, intron 3 of 8)	intron (NM_001143995, intron 3 of 8)	13996	NM_004811	9404	Hs.125474	XM_005274407	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
2757	chr3	65938515	65942069	+	0	NA	intron (NM_004742, intron 1 of 22)	intron (NM_004742, intron 1 of 22)	60801	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
4823	chr6	165964973	165967854	+	0	NA	intron (NM_001130690, intron 1 of 21)	intron (NM_001130690, intron 1 of 21)	109175	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
1222	chr5	156698750	156700983	+	0	NA	intron (NM_014376, intron 1 of 30)	intron (NM_014376, intron 1 of 30)	3504	NM_014376	26999	Hs.519702	XM_005265883	ENSG00000055163	CYFIP2	PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
3473	chr1	7530338	7532290	+	0	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-300015	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
174	chr10	20819739	20821273	+	0	NA	Intergenic	L1PA4|LINE|L1	-20393	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	ncRNA
1571	chrX	57312976	57314213	+	0	NA	intron (NM_174912, intron 1 of 10)	intron (NM_174912, intron 1 of 10)	484	NM_174912	158584	Hs.745495	XM_005261982	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
422	chr13	42601980	42603318	+	0	NA	Intergenic	Intergenic	-11523	NM_001204504	160851	Hs.733239	XM_005266270	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase, eta	protein-coding
905	chr3	72956488	72958275	+	0	NA	intron (NM_001080393, intron 1 of 6)	intron (NM_001080393, intron 1 of 6)	19996	NM_001080393	727936	Hs.710275	NM_001080393		GXYLT2	GLT8D4	glucoside xylosyltransferase 2	protein-coding
3308	chr8	97534539	97538104	+	0	NA	intron (NM_002998, intron 1 of 4)	intron (NM_002998, intron 1 of 4)	30439	NM_002998	6383	Hs.598247	XM_005251019	ENSG00000169439	SDC2	CD362|HSPG|HSPG1|SYND2	syndecan 2	protein-coding
3681	chr10	78042130	78043049	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	500070	NM_032024	83938	Hs.690504	XM_005270212	ENSG00000148655	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
52	chr1	72985925	72987437	+	0	NA	Intergenic	L2a|LINE|L2	-238404	NM_173808	257194	Hs.146542	XM_005270723		NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
302	chr11	122263950	122265821	+	0	NA	Intergenic	Intergenic	-191115	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
1451	chr8	68648333	68651146	+	0	NA	intron (NM_020361, intron 1 of 10)	L2c|LINE|L2	8881	NM_020361	57094	Hs.658850	NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
2452	chr2	33515146	33517836	+	0	NA	intron (NM_000627, intron 15 of 29)	intron (NM_000627, intron 15 of 29)	-144925	NM_170672	25780	Hs.143674	XM_005264246	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
3842	chr12	122594818	122596464	+	0	NA	intron (NM_014938, intron 1 of 16)	AluY|SINE|Alu	-56625	NM_152759	254050	Hs.374856	XR_242953	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
593	chr17	70977793	70981635	+	0	NA	intron (NM_139177, intron 4 of 9)	intron (NM_139177, intron 4 of 9)	109139	NM_139177	201266	Hs.221127	XM_005257134	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39, member 11	protein-coding
3358	chr9	78504325	78508015	+	0	NA	exon (NM_001190482, exon 1 of 37)	exon (NM_001190482, exon 1 of 37)	610	NM_001190482	5125	Hs.368542	XM_005252039	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6|subtilase	proprotein convertase subtilisin/kexin type 5	protein-coding
188	chr10	69308778	69310337	+	0	NA	intron (NM_001127384, intron 3 of 17)	MER58B|DNA|hAT-Charlie	115859	NM_001127384	29119	Hs.660362	XM_005269717	ENSG00000183230	CTNNA3	VR22	catenin (cadherin-associated protein), alpha 3	protein-coding
402	chr12	124474397	124477565	+	0	NA	intron (NM_152437, intron 3 of 4)	intron (NM_152437, intron 3 of 4)	18219	NM_001204299	100533183	Hs.524828	NM_001204299	ENSG00000255906	ZNF664-FAM101A	-	protein FAM101A	protein-coding
3152	chr6	90926859	90929619	+	0	NA	intron (NM_001170794, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	78323	NM_021813	60468	Hs.269764	XM_005248758	ENSG00000112182	BACH2	BTBD25	BTB and CNC homology 1, basic leucine zipper transcription factor 2	protein-coding
1940	chr11	19999056	20004484	+	0	NA	intron (NM_001244963, intron 11 of 39)	intron (NM_001244963, intron 11 of 39)	-42332	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
3366	chr9	88741075	88743725	+	0	NA	Intergenic	Intergenic	-27284	NM_177937	51280	Hs.494337	XM_005252040	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
1641	chr1	153712921	153719428	+	0	NA	intron (NM_023015, intron 3 of 29)	intron (NM_023015, intron 3 of 29)	15607	NM_023015	65123	Hs.516522	XM_005245459	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A	integrator complex subunit 3	protein-coding
640	chr19	29451359	29453559	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-3579	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
1384	chr7	92452170	92455034	+	0	NA	intron (NM_001259, intron 2 of 7)	intron (NM_001259, intron 2 of 7)	9629	NM_001259	1021	Hs.119882	XM_005250106	ENSG00000105810	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
1468	chr8	68604174	68606310	+	0	NA	intron (NM_020361, intron 1 of 10)	intron (NM_020361, intron 1 of 10)	53378	NM_020361	57094	Hs.658850	NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
3184	chr6	150463055	150465707	+	0	NA	exon (NM_030949, exon 1 of 4)	exon (NM_030949, exon 1 of 4)	193	NM_030949	81706	Hs.486798	XM_005267152	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1, regulatory (inhibitor) subunit 14C	protein-coding
1726	chr1	151540431	151543839	+	0	NA	exon (NM_001126337, exon 6 of 12)	exon (NM_001126337, exon 6 of 12)	23863	NR_030280	693139		NR_030280		MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
2068	chr12	93012948	93015920	+	0	NA	Intergenic	HERVK3-int|LTR|ERVK	-82185	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
1464	chr8	37031366	37033019	+	0	NA	Intergenic	Intergenic	390350	NM_001031836	157855	Hs.13861	XM_005273423	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
1494	chr9	2390936	2392087	+	0	NA	Intergenic	Intergenic	-230282	NM_001018056	7436	Hs.370422	XM_005251576	ENSG00000147852	VLDLR	CARMQ1|CHRMQ1|VLDLRCH	very low density lipoprotein receptor	protein-coding
3440	chrY	19986681	19989391	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	4063	NM_001001722	203611	Hs.532657	NM_001001722	ENSG00000129873	CDY2B	CDY	chromodomain protein, Y-linked, 2B	protein-coding
4428	chr3	48473673	48476679	+	0	NA	exon (NM_024661, exon 3 of 4)	exon (NM_024661, exon 3 of 4)	-3716	NM_001130082	5364	Hs.476209	XM_005265232	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
4354	chr20	56321358	56325258	+	0	NA	Intergenic	MIRb|SINE|MIR	-36716	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
2018	chr12	130608602	130628537	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	27654	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
3426	chrX	82011371	82014448	+	0	NA	Intergenic	Intergenic	-750360	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
1906	chr10	112660671	112663647	+	0	NA	intron (NM_001243783, intron 1 of 2)	intron (NM_001243783, intron 1 of 2)	4311	NR_039828	100616113		NR_039828	ENSG00000265827	MIR4680	-	microRNA 4680	ncRNA
464	chr14	60469355	60471595	+	0	NA	non-coding (NR_075071, exon 21 of 33)	non-coding (NR_075071, exon 21 of 33)	84044	NR_075071	341883	Hs.666245	NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	pseudo
2977	chr5	66186413	66188941	+	0	NA	intron (NM_015183, intron 1 of 27)	MLT1L|LTR|ERVL-MaLR	63073	NM_015183	375449	Hs.595458	XM_005248498	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
3235	chr7	31785683	31789156	+	0	NA	Intergenic	LTR8A|LTR|ERV1	60788	NM_001145123	10842	Hs.227011	NM_001145123	ENSG00000106341	PPP1R17	C7orf16|GSBS	protein phosphatase 1, regulatory subunit 17	protein-coding
2011	chr12	96155113	96161857	+	0	NA	intron (NM_021229, intron 2 of 9)	intron (NM_021229, intron 2 of 9)	26051	NM_021229	59277	Hs.201034	XM_005269058	ENSG00000074527	NTN4	PRO3091	netrin 4	protein-coding
6	chr1	61750924	61754871	+	0	NA	intron (NM_001134673, intron 3 of 10)	intron (NM_001134673, intron 3 of 10)	-33707	NR_104180	645030	Hs.632410	XR_246331		RP5-833A20.1	-	uncharacterized LOC645030	ncRNA
3452	chr1	151568058	151570161	+	0	NA	Intergenic	L2c|LINE|L2	-15553	NM_030918	81609	Hs.192326	XM_005245509	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
4435	chr3	55521015	55522689	+	0	NA	promoter-TSS (NM_003392)	promoter-TSS (NM_003392)	-182	NM_003392	7474	Hs.643085	NM_001256105	ENSG00000114251	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
3867	chr13	99708665	99711119	+	0	NA	intron (NM_015296, intron 1 of 55)	intron (NM_015296, intron 1 of 55)	28768	NM_001130049	23348	Hs.596105	XM_005254034	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
1304	chr6	44053597	44056041	+	0	NA	Intergenic	Intergenic	40372	NM_032111	64928	Hs.311190	XM_005249299	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
2327	chr18	9054330	9056613	+	0	NA	Intergenic	Intergenic	-47157	NM_021074	4729	Hs.464572	XM_005258106	ENSG00000178127	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
3179	chr6	140858140	140861251	+	0	NA	Intergenic	Intergenic	-145256	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
3189	chr6	154922476	154925445	+	0	NA	Intergenic	Intergenic	-92207	NM_173515	154043	Hs.16064	NM_173515		CNKSR3	MAGI1	CNKSR family member 3	protein-coding
3569	chr1	201561873	201563783	+	0	NA	Intergenic	Intergenic	-54622	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
1593	chrX	106984554	106986252	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-25112	NM_004089	1831	Hs.522074	XM_005262098	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
705	chr2	36653547	36658553	+	0	NA	intron (NM_016441, intron 2 of 16)	MLT1J|LTR|ERVL-MaLR	72680	NM_016441	51232	Hs.699247	XM_005264357	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
4763	chr6	31081850	31083501	+	0	NA	promoter-TSS (NM_014068).4	promoter-TSS (NM_014068).4	67	NM_014068	170679	Hs.310958	NM_014068	ENSG00000204540	PSORS1C1	C6orf16|SEEK1	psoriasis susceptibility 1 candidate 1	protein-coding
4381	chr22	18538497	18540501	+	0	NA	Intergenic	Intergenic	-21187	NM_017929	55670	Hs.517400	XM_005261253		PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
1720	chr1	145218496	145223317	+	0	NA	intron (NM_203458, intron 1 of 4)	MIRb|SINE|MIR	11793	NM_203458	388677	Hs.728902	XM_005272954	ENSG00000213240	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
3053	chr6	33341416	33344322	+	0	NA	Intergenic	Intergenic	-16444	NM_002263	3833	Hs.436912	XM_005249092	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
2206	chr15	65145597	65150788	+	0	NA	intron (NM_025201, intron 3 of 5)	intron (NM_025201, intron 3 of 5)	14110	NM_025201	80301	Hs.709337	NM_001195059	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing, family O member 2	protein-coding
4471	chr3	111793425	111794800	+	0	NA	intron (NR_026734, intron 13 of 16)	intron (NR_026734, intron 13 of 16)	-11070	NM_001171747	79669	Hs.434247	XM_005247764	ENSG00000114529	C3orf52	TTMP	chromosome 3 open reading frame 52	protein-coding
2177	chr15	29861764	29864141	+	0	NA	promoter-TSS (NM_015307)	promoter-TSS (NM_015307)	-25	NM_015307	23359	Hs.383564	XM_005254261	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
912	chr3	187284579	187286654	+	0	NA	Intergenic	MIRc|SINE|MIR	102585	NM_001048	6750	Hs.12409	NM_001048	ENSG00000157005	SST	SMST	somatostatin	protein-coding
785	chr2	214508332	214509907	+	0	NA	intron (NR_047659, intron 12 of 17)	L1M1|LINE|L1	360016	NR_047659	79582	Hs.743365	NM_001025436	ENSG00000144451	SPAG16	PF20|WDR29	sperm associated antigen 16	protein-coding
1432	chr7	122318560	122320284	+	0	NA	intron (NM_001009571, intron 2 of 27)	MER11B|LTR|ERVK	19786	NM_139175	168433	Hs.126730	NM_139175	ENSG00000188050	RNF133	-	ring finger protein 133	protein-coding
4574	chr4	141647740	141650404	+	0	NA	intron (NM_015130, intron 1 of 20)	intron (NM_015130, intron 1 of 20)	28399	NM_015130	23158	Hs.595450	NM_015130	ENSG00000109436	TBC1D9	MDR1	TBC1 domain family, member 9 (with GRAM domain)	protein-coding
599	chr18	2410207	2411732	+	0	NA	Intergenic	Intergenic	160520	NM_022840	64863	Hs.126888	XM_005258131	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
1930	chr11	92027053	92029789	+	0	NA	Intergenic	Intergenic	-56841	NM_001008781	120114	Hs.98523	XM_005273759	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
587	chr17	56862854	56864766	+	0	NA	intron (NM_014906, intron 1 of 6)	MER44C|DNA|TcMar-Tigger	30580	NR_048561	22843	Hs.245044	XM_005257168		PPM1E	CaMKP-N|POPX1|PP2CH|caMKN	protein phosphatase, Mg2+/Mn2+ dependent, 1E	protein-coding
1235	chr5	180289539	180294819	+	0	NA	Intergenic	AluSq|SINE|Alu	-3893	NM_152283	643836	Hs.735373	XM_005265963	ENSG00000196670	ZFP62	ZET|ZNF755	ZFP62 zinc finger protein	protein-coding
3814	chr12	88171751	88172539	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	6343	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
95	chr1	169494222	169496123	+	0	NA	exon (NM_000130, exon 18 of 25)	exon (NM_000130, exon 18 of 25)	-39964	NM_006996	10560	Hs.30246	XM_005244840	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding
298	chr11	115636208	115637371	+	0	NA	Intergenic	L2b|LINE|L2	-5871	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
3291	chr8	22837279	22842900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4841	NM_001160036	23221	Hs.372688	NM_001160036	ENSG00000008853	RHOBTB2	DBC2	Rho-related BTB domain containing 2	protein-coding
923	chr3	15359250	15364636	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	12193	NM_004844	9467	Hs.257761	XM_005265588	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
243	chr11	4692312	4695913	+	0	NA	Intergenic	Intergenic	24964	NM_030774	81285	Hs.606330	NM_030774	ENSG00000167332	OR51E2	OR51E3P|OR52A2|PSGR	olfactory receptor, family 51, subfamily E, member 2	protein-coding
4731	chr6	7973333	7974022	+	0	NA	intron (NR_037616, intron 4 of 12)	AluSg|SINE|Alu	-12658	NR_027712	206426	Hs.676966	NR_027712		PIP5K1P1	-	phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1	pseudo
3835	chr12	107728592	107731864	+	0	NA	intron (NM_001018072, intron 1 of 16)	MIR|SINE|MIR	18031	NM_001018072	121551	Hs.271272	XM_005268645	ENSG00000151136	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
2051	chr12	51012626	51016781	+	0	NA	intron (NM_173602, intron 1 of 37)	MER5A|DNA|hAT-Charlie	115935	NM_173602	57609	Hs.505516	XM_005269044	ENSG00000066084	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
2682	chr22	35695027	35704040	+	0	NA	intron (NR_024195, intron 1 of 13)	AluSz|SINE|Alu	3736	NR_024195	10043	Hs.474705	NM_001135729	ENSG00000100284	TOM1	-	target of myb1 (chicken)	protein-coding
4968	chr9	100988114	100990260	+	0	NA	intron (NM_001267571, intron 5 of 12)	intron (NM_001267571, intron 5 of 12)	2312	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA mir-6854	ncRNA
753	chr2	103592147	103594967	+	0	NA	Intergenic	Intergenic	215067	NM_144632	130827	Hs.436203	XM_005263874	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
2404	chr2	30470591	30484239	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	23018	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
2171	chr15	79279622	79282723	+	0	NA	intron (NM_002891, intron 23 of 27)	L3|LINE|CR1	16830	NM_153815	5923	Hs.459035	XM_005254578	ENSG00000058335	RASGRF1	CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1	Ras protein-specific guanine nucleotide-releasing factor 1	protein-coding
106	chr1	183608811	183610069	+	0	NA	intron (NM_015149, intron 1 of 18)	MER65D|LTR|ERV1	4232	NM_015149	23179	Hs.497148	XM_005245010	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
2611	chr20	6971726	6977371	+	0	NA	Intergenic	Intergenic	225803	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
4425	chr3	39850487	39851727	+	0	NA	promoter-TSS (NM_015460)	promoter-TSS (NM_015460)	-44	NM_015460	25924	Hs.594535	XM_005265026	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
65	chr1	117252685	117254660	+	0	NA	Intergenic	Intergenic	16938	NM_001013643	388667	Hs.127851	NM_001013643	ENSG00000203864	C1orf137	-	chromosome 1 open reading frame 137	protein-coding
203	chr10	90580436	90581822	+	0	NA	TTS (NM_001128215)	TTS (NM_001128215)	18642	NM_001128215	340654	Hs.55118	XM_005269764	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase, family member M	protein-coding
4373	chr21	40284598	40285946	+	0	NA	Intergenic	Intergenic	55809	NR_109926	101928398	Hs.122403	XR_244310		LOC101928398	-	uncharacterized LOC101928398	ncRNA
1023	chr4	182877903	182879135	+	0	NA	Intergenic	Intergenic	187149	NR_027107	90768	Hs.175465	XR_244654		MGC45800	AC108142.1	uncharacterized LOC90768	ncRNA
2742	chr3	39221329	39223262	+	0	NA	Intergenic	CpG	11782	NM_194293	165904	Hs.737550	XM_005264909	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin-binding repeat containing 1	protein-coding
4702	chr6	41679523	41682750	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	21003	NM_001271945	7942	Hs.485360	XM_005249410	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
86	chr1	158013751	158016637	+	0	NA	intron (NM_001286349, intron 1 of 12)	MER21C|LTR|ERVL	52131	NM_018240	55243	Hs.657006	XM_005245305	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
1199	chr5	131550385	131551979	+	0	NA	intron (NM_001017973, intron 4 of 14)	intron (NM_001017973, intron 4 of 14)	2429	NR_106888	102465498		NR_106888		MIR6830	hsa-mir-6830	microRNA mir-6830	ncRNA
2084	chr12	131731894	131737868	+	0	NA	Intergenic	Intergenic	85325	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	RP11-638F5.1	-	uncharacterized LOC116437	ncRNA
2473	chr2	64767564	64772473	+	0	NA	intron (NM_203437, intron 1 of 9)	intron (NM_203437, intron 1 of 9)	17371	NR_039633	100616419		NR_039633		MIR4434	-	microRNA 4434	ncRNA
1158	chr5	53911041	53912774	+	0	NA	Intergenic	Intergenic	87245	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
656	chr2	62175626	62178043	+	0	NA	intron (NM_152516, intron 1 of 2)	intron (NM_152516, intron 1 of 2)	44031	NM_152516	150684	Hs.468702	XM_005264157		COMMD1	C2orf5|MURR1	copper metabolism (Murr1) domain containing 1	protein-coding
2170	chr15	78347856	78350431	+	0	NA	intron (NM_015079, intron 1 of 12)	MIR3|SINE|MIR	20851	NM_144572	23102	Hs.567426	XM_005254242	ENSG00000167202	TBC1D2B	-	TBC1 domain family, member 2B	protein-coding
2335	chr18	18632251	18634080	+	0	NA	intron (NM_005406, intron 2 of 32)	Cheshire|DNA|hAT-Charlie	58647	NM_005406	6093	Hs.306307	NM_005406		ROCK1	P160ROCK|ROCK-I	Rho-associated, coiled-coil containing protein kinase 1	protein-coding
2921	chr4	184717874	184720117	+	0	NA	Intergenic	CpG	-107514	NM_020225	56977	Hs.696657	XM_005263142	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
4726	chr6	4008190	4008832	+	0	NA	Intergenic	MIR|SINE|MIR	-13058	NM_003913	8899	Hs.159014	XR_241928	ENSG00000112739	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	pre-mRNA processing factor 4B	protein-coding
3468	chr1	873071	881314	+	0	NA	intron (NM_152486, intron 8 of 13)	CpG-18	16071	NM_152486	148398	Hs.335293	XM_005244723	ENSG00000187634	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
435	chr13	80323436	80325333	+	0	NA	Intergenic	Intergenic	-260828	NR_104138	101515984	Hs.569290	NR_104138		LINC01080	TCONS_00021856	long intergenic non-protein coding RNA 1080	ncRNA
3195	chr6	165981790	165984068	+	0	NA	intron (NM_001130690, intron 1 of 21)	intron (NM_001130690, intron 1 of 21)	92659	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
1482	chr8	115723868	115725982	+	0	NA	Intergenic	Intergenic	955314	NM_001282902	7227	Hs.657018	XM_005251046	ENSG00000104447	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
885	chr21	44616757	44617855	+	0	NA	Intergenic	Intergenic	28165	NM_000394	1409	Hs.184085	XM_005261093	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
1412	chr7	84314610	84316593	+	0	NA	Intergenic	Intergenic	153809	NR_110079	101927378	Hs.539042	XR_242309	ENSG00000235139	AC003984.1	-	uncharacterized LOC101927378	ncRNA
1709	chr1	89486812	89489261	+	0	NA	intron (NM_018284, intron 1 of 10)	intron (NM_018284, intron 1 of 10)	513	NM_018284	2635	Hs.720167	XM_005270741	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
4896	chr7	141395486	141396666	+	0	NA	intron (NM_001080392, intron 1 of 8)	intron (NM_001080392, intron 1 of 8)	5877	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
339	chr12	15922657	15924296	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	19034	NM_004447	2059	Hs.591160	XM_005253339	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
228	chr11	130546932	130548277	+	0	NA	intron (NM_001271983, intron 1 of 2)	intron (NM_001271983, intron 1 of 2)	4753	NM_001271983	283171	Hs.376151	NM_001271983	ENSG00000175728	C11orf44	-	chromosome 11 open reading frame 44	protein-coding
3783	chr12	19896579	19897845	+	0	NA	Intergenic	Intergenic	-270407	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
268	chr11	45305988	45308460	+	0	NA	intron (NM_001247987, intron 1 of 7)	intron (NM_001247987, intron 1 of 7)	660	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
829	chr20	8230268	8232844	+	0	NA	intron (NM_182734, intron 2 of 32)	L2c|LINE|L2	118644	NM_015192	23236	Hs.431173	XM_005260681	ENSG00000182621	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
2872	chr4	57943225	57948825	+	0	NA	intron (NM_001553, intron 1 of 4)	MIRb|SINE|MIR	-29903	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	RP11-12A1.1	IGFBP7 antisense RNA 1	ncRNA
3677	chr10	75350742	75352639	+	0	NA	Intergenic	Intergenic	-16257	NM_152586	159195	Hs.657355	XM_005269578	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
596	chr18	13499784	13502233	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	41062	NR_049822	100847080		NR_049822		MIR5190	-	microRNA 5190	ncRNA
1297	chr6	37597510	37599018	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	67502	NM_153487	266727	Hs.437993	XM_005249003	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
2090	chr13	96255236	96260635	+	0	NA	intron (NM_198968, intron 14 of 22)	intron (NM_198968, intron 14 of 22)	39025	NM_014934	22873	Hs.742077	XM_005254032	ENSG00000134874	DZIP1	DZIP|DZIPt1	DAZ interacting zinc finger protein 1	protein-coding
1521	chr9	36090579	36093370	+	0	NA	intron (NM_021111, intron 10 of 20)	intron (NM_021111, intron 10 of 20)	-44559	NR_104641	152007	Hs.493819	XM_005251369	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
1862	chr10	29234914	29239559	+	0	NA	Intergenic	MIRb|SINE|MIR	101899	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
2352	chr18	47383550	47386679	+	0	NA	intron (NM_001080467, intron 29 of 39)	intron (NM_001080467, intron 29 of 39)	44721	NR_003003	677769		NR_003003		SCARNA17	U91	small Cajal body-specific RNA 17	ncRNA
3495	chr1	44792509	44793618	+	0	NA	intron (NM_024066, intron 3 of 8)	intron (NM_024066, intron 3 of 8)	27876	NM_024066	79033	Hs.731413	XM_005271183	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
1082	chr4	77644234	77645643	+	0	NA	intron (NM_020859, intron 3 of 10)	MIR|SINE|MIR	150217	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
121	chr1	201183563	201193070	+	0	NA	intron (NM_001164586, intron 18 of 23)	intron (NM_001164586, intron 18 of 23)	28363	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
1066	chr4	41599602	41606722	+	0	NA	intron (NM_014988, intron 4 of 26)	L2a|LINE|L2	-11627	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
487	chr14	98936494	98937902	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-240752	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
494	chr15	62355355	62357616	+	0	NA	Intergenic	MIRb|SINE|MIR	-2691	NM_207322	145741	Hs.202656	NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
1956	chr11	71779272	71782116	+	0	NA	intron (NM_001286561, intron 2 of 26)	intron (NM_001286561, intron 2 of 26)	2654	NR_036123	100422953		NR_036123	ENSG00000263742	MIR3165	-	microRNA 3165	ncRNA
3333	chr9	104084299	104091609	+	0	NA	TTS (NM_207299)	TTS (NM_207299)	57847	NM_001127610	570	Hs.284712	NM_001127610	ENSG00000136881	BAAT	BACAT|BAT	bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)	protein-coding
238	chr11	112162846	112165020	+	0	NA	Intergenic	Kanga1c|DNA|TcMar-Tc2	-32350	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
2235	chr16	57640098	57684685	+	0	NA	promoter-TSS (NM_001145771)	promoter-TSS (NM_001145771)	-28	NM_201525	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
2778	chr3	102802678	102807387	+	0	NA	Intergenic	Intergenic	651173	NM_175056	131368	Hs.352213	XM_005247110	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
3175	chr6	135229279	135231141	+	0	NA	Intergenic	Intergenic	41050	NM_170771	64577	Hs.486520	NM_001193480	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family, member A1	protein-coding
4819	chr6	157273961	157275535	+	0	NA	intron (NM_017519, intron 4 of 18)	intron (NM_017519, intron 4 of 18)	-173883	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	-	microRNA 4466	ncRNA
873	chr21	30143632	30145538	+	0	NA	Intergenic	Intergenic	113110	NR_047510	29104	Hs.163846	NM_013240		N6AMT1	C21orf127|HEMK2|MTQ2|N6AMT	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
3604	chr1	228133244	228136604	+	0	NA	intron (NM_003395, intron 1 of 3)	CpG	752	NM_003395	7483	Hs.149504	NM_003395		WNT9A	WNT14	wingless-type MMTV integration site family, member 9A	protein-coding
3081	chr6	2621843	2626394	+	0	NA	5' UTR (NM_152554, exon 3 of 3)	5' UTR (NM_152554, exon 3 of 3)	11180	NM_152554	154386	Hs.680574	NM_152554		C6orf195	RP11-145H9.2|bA145H9.2	chromosome 6 open reading frame 195	protein-coding
4792	chr6	107139689	107140800	+	0	NA	Intergenic	Intergenic	62803	NM_018292	55278	Hs.406917	NM_018292	ENSG00000130348	QRSL1	GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding
3099	chr6	11363998	11369729	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	15718	NM_001142393	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
448	chr14	25284930	25287808	+	0	NA	intron (NM_014178, intron 5 of 5)	MIR|SINE|MIR	-182937	NM_004131	3002	Hs.1051	XM_005267571	ENSG00000100453	GZMB	CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)	protein-coding
3634	chr10	93355597	93360175	+	0	NA	intron (NR_024467, intron 1 of 4)	intron (NR_024467, intron 1 of 4)	13331	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
3760	chr12	20520180	20529617	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	2719	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
2631	chr20	22992842	22996819	+	0	NA	Intergenic	AluSq2|SINE|Alu	-21227	NM_001052	6754	Hs.673846	NM_001052	ENSG00000132671	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
2278	chr17	73596296	73601311	+	0	NA	intron (NR_003587, intron 14 of 60)	intron (NR_003587, intron 14 of 60)	14664	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
4152	chr2	28211904	28212649	+	0	NA	intron (NM_001261840, intron 4 of 11)	L2b|LINE|L2	-6958	NR_036230	100422965		NR_036230		MIR4263	-	microRNA 4263	ncRNA
4639	chr5	90277541	90280870	+	0	NA	intron (NR_003149, intron 84 of 89)	intron (NR_003149, intron 84 of 89)	331014	NR_103548	100505994	Hs.745403	NR_103548	ENSG00000248323	LUCAT1	RP11-213H15.3|RP11-213H15.4|SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
4647	chr5	95863836	95864467	+	0	NA	Intergenic	Intergenic	-95166	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
3297	chr8	8774366	8776306	+	0	NA	Intergenic	Intergenic	-24205	NM_004225	9258	Hs.379414	XR_246634	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
1532	chr9	85745048	85746499	+	0	NA	Intergenic	Intergenic	-67730	NM_152573	158158	Hs.129136	XM_005251730	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
4246	chr2	191272381	191274192	+	0	NA	intron (NM_017694, intron 1 of 7)	CpG	205	NM_017694	54842	Hs.744117	XM_005246654	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
713	chr2	62514294	62516545	+	0	NA	Intergenic	Intergenic	82458	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
3557	chr1	185409463	185411677	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-106399	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule-associated protein 1 light chain 3 beta pseudogene	pseudo
4233	chr2	158640333	158642781	+	0	NA	intron (NM_001111067, intron 3 of 10)	intron (NM_001111067, intron 3 of 10)	90066	NM_001105	90	Hs.470316	XM_005246939	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor, type I	protein-coding
2839	chr4	66513889	66520184	+	0	NA	intron (NM_001281767, intron 1 of 16)	MLT1L|LTR|ERVL-MaLR	-18643	NR_034138	100144602	Hs.201854	NR_034138	ENSG00000250846	RP11-807H7.1	-	uncharacterized LOC100144602	ncRNA
4532	chr4	19740437	19741915	+	0	NA	Intergenic	Intergenic	-514011	NM_001289135	9353	Hs.29802	XM_005248211	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
1679	chr1	9881150	9888009	+	0	NA	promoter-TSS (NM_014944)	promoter-TSS (NM_014944)	-29	NM_014944	22883	Hs.29665	XM_005263432	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
4238	chr2	161438939	161440700	+	0	NA	Intergenic	Intergenic	-89501	NM_002897	5937	Hs.708357	XM_005246737	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
4346	chr20	45442877	45444365	+	0	NA	Intergenic	Intergenic	-79642	NM_005244	2139	Hs.722416	XM_005260327	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
4215	chr2	109210125	109211766	+	0	NA	intron (NM_001193488, intron 1 of 9)	intron (NM_001193488, intron 1 of 9)	6023	NM_001193488	3987	Hs.613268	XM_005263946	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
1262	chr6	5205170	5206888	+	0	NA	intron (NM_001164840, intron 2 of 2)	intron (NM_001164840, intron 2 of 2)	55154	NM_001164840	57128	Hs.387755	XM_005249237	ENSG00000214113	LYRM4	C6orf149|CGI-203|COXPD19|ISD11	LYR motif containing 4	protein-coding
1290	chr6	25831509	25833377	+	0	NA	promoter-TSS (NM_005074)	promoter-TSS (NM_005074)	-156	NM_005074	6568	Hs.205816	XM_005249306	ENSG00000124568	SLC17A1	NAPI-1|NPT-1|NPT1	solute carrier family 17 (organic anion transporter), member 1	protein-coding
1527	chr9	77844206	77845885	+	0	NA	Intergenic	LTR18A|LTR|ERVL	141647	NM_012383	26578	Hs.494192	NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
2162	chr14	99844364	99846358	+	0	NA	Intergenic	Intergenic	101865	NM_032233	84193	Hs.510407	XM_005268125	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
1132	chr5	174440442	174443050	+	0	NA	Intergenic	Intergenic	-19012	NR_046113	441116	Hs.533036	NM_001004348	ENSG00000204754	FLJ16171	-	FLJ16171 protein	ncRNA
4308	chr20	4922440	4923890	+	0	NA	intron (NM_203327, intron 2 of 16)	intron (NM_203327, intron 2 of 16)	58980	NM_005116	9962	Hs.516866	XM_005260901	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
4707	chr6	36583713	36585968	+	0	NA	Intergenic	Intergenic	5449	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
5022	chrX	151150357	151151643	+	0	NA	Intergenic	Intergenic	-7849	NM_004961	2564	Hs.22785	XM_005274661	ENSG00000102287	GABRE	-	gamma-aminobutyric acid (GABA) A receptor, epsilon	protein-coding
1925	chr11	45283850	45290892	+	0	NA	intron (NM_001247987, intron 2 of 7)	MER20|DNA|hAT-Charlie	20513	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
3847	chr12	130623504	130625422	+	0	NA	Intergenic	Intergenic	21760	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
2574	chr2	240865942	240868459	+	0	NA	Intergenic	Intergenic	15311	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	-	microRNA 4786	ncRNA
2916	chr4	169551618	169554820	+	0	NA	intron (NM_001166109, intron 1 of 18)	intron (NM_001166109, intron 1 of 18)	451	NM_001166109	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
3126	chr6	41671531	41676147	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	28300	NM_001271945	7942	Hs.485360	XM_005249410	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
631	chr19	29589010	29591042	+	0	NA	Intergenic	Intergenic	96564	NR_040036	100505835	Hs.176539	NR_040036	ENSG00000267014	LOC100505835	-	uncharacterized LOC100505835	ncRNA
547	chr16	65149557	65152625	+	0	NA	intron (NM_001797, intron 1 of 12)	intron (NM_001797, intron 1 of 12)	4828	NM_001797	1009	Hs.116471	XM_005255761		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
1544	chr9	119740789	119742633	+	0	NA	intron (NM_014010, intron 6 of 21)	intron (NM_014010, intron 6 of 21)	201769	NR_003708	100124538	Hs.693445	NR_003708		SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
1616	chrY	23863706	23864954	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-107778	NR_001537	83868	Hs.615432	NR_001537	ENSG00000184991	TTTY13	NCRNA00136|TTY13	testis-specific transcript, Y-linked 13 (non-protein coding)	ncRNA
4694	chr5	172382073	172383510	+	0	NA	non-coding (NR_026682, exon 4 of 4)	non-coding (NR_026682, exon 4 of 4)	2987	NR_026683	100268168	Hs.519766	XR_245267	ENSG00000204758	LOC100268168	-	uncharacterized LOC100268168	ncRNA
396	chr12	105838786	105840639	+	0	NA	Intergenic	Intergenic	115298	NM_001145199	387882	Hs.368938	NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
1422	chr7	100625171	100628253	+	0	NA	intron (NM_001164462, intron 1 of 11)	AluSx1|SINE|Alu	13808	NM_001164462	10071	Hs.489355	NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
482	chr14	90986546	90990848	+	0	NA	Intergenic	Intergenic	67123	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	AL096869.5	long intergenic non-protein coding RNA 642	ncRNA
949	chr3	65874328	65876187	+	0	NA	intron (NM_004742, intron 1 of 22)	intron (NM_004742, intron 1 of 22)	-4234	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
499	chr15	26875901	26878606	+	0	NA	intron (NM_000814, intron 3 of 8)	intron (NM_000814, intron 3 of 8)	-2928	NR_103801	2562	Hs.727263	NM_000814	ENSG00000166206	GABRB3	ECA5	gamma-aminobutyric acid (GABA) A receptor, beta 3	protein-coding
3432	chrX	112083294	112085512	+	0	NA	promoter-TSS (NM_133265)	promoter-TSS (NM_133265)	-360	NM_133265	154796	Hs.528051	XM_005262087	ENSG00000126016	AMOT	-	angiomotin	protein-coding
4713	chr6	88439968	88443357	+	0	NA	Intergenic	Intergenic	-29677	NM_018064	55122	Hs.485915	NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
4556	chr4	86748301	86749874	+	0	NA	promoter-TSS (NM_001287805)	promoter-TSS (NM_001287805)	41	NM_001287805	83478	Hs.444229	XM_005263263	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
4970	chr9	101008412	101015151	+	0	NA	intron (NR_051978, intron 1 of 11)	intron (NR_051978, intron 1 of 11)	6222	NR_051978	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
1047	chr4	41347895	41349411	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-12971	NM_001289124	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
3856	chr13	23923722	23924562	+	0	NA	intron (NM_001278055, intron 7 of 7)	L2c|LINE|L2	25540	NM_001278055	26278	Hs.159492	XM_005266338	ENSG00000151835	SACS	ARSACS|DNAJC29	spastic ataxia of Charlevoix-Saguenay (sacsin)	protein-coding
1276	chr6	15948692	15951541	+	0	NA	Intergenic	MIRc|SINE|MIR	-179201	NM_013262	29116	Hs.484738	XM_005249032	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
3228	chr7	23370980	23376694	+	0	NA	intron (NM_006547, intron 10 of 14)	AluSz|SINE|Alu	34897	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
909	chr3	152108402	152111462	+	0	NA	intron (NM_207293, intron 1 of 8)	intron (NM_207293, intron 1 of 8)	-51153	NM_001123228	645843	Hs.632562	NM_001123228	ENSG00000221962	TMEM14E	-	transmembrane protein 14E	protein-coding
4121	chr19	46687561	46689511	+	0	NA	Intergenic	Intergenic	-24963	NR_027003	93429	Hs.569940	NR_027003	ENSG00000268460	DKFZp434J0226	-	uncharacterized LOC93429	ncRNA
4315	chr20	9281347	9283469	+	0	NA	intron (NM_182797, intron 1 of 35)	intron (NM_182797, intron 1 of 35)	-6039	NM_000933	5332	Hs.472101	XM_005260722	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
1124	chr5	71269341	71271147	+	0	NA	Intergenic	Intergenic	-132874	NM_005909	4131	Hs.335079	XM_005248507	ENSG00000131711	MAP1B	FUTSCH|MAP5	microtubule-associated protein 1B	protein-coding
2618	chr20	11523350	11526028	+	0	NA	Intergenic	Intergenic	-270658	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
2981	chr5	71541950	71545875	+	0	NA	intron (NM_001286748, intron 4 of 11)	intron (NM_001286748, intron 4 of 11)	72172	NM_001286751	23107	Hs.482491	XM_005248471	ENSG00000113048	MRPS27	MRP-S27|S27mt	mitochondrial ribosomal protein S27	protein-coding
75	chr1	144988810	144990529	+	0	NA	intron (NM_001002810, intron 1 of 3)	intron (NM_001002810, intron 1 of 3)	5364	NM_001002810	9659	Hs.731111	XM_005272981	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
4266	chr2	234597161	234598083	+	0	NA	intron (NM_019077, intron 1 of 4)	intron (NM_019077, intron 1 of 4)	-2699	NM_205862	54578	Hs.554822	NM_001072	ENSG00000167165	UGT1A6	GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F	UDP glucuronosyltransferase 1 family, polypeptide A6	protein-coding
2588	chr20	6745568	6753423	+	0	NA	5' UTR (NM_001200, exon 1 of 3)	5' UTR (NM_001200, exon 1 of 3)	750	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
1163	chr5	59666325	59669500	+	0	NA	intron (NM_001165899, intron 1 of 16)	L1ME3A|LINE|L1	-115628	NR_024617	25859	Hs.146312	NM_001039499	ENSG00000152931	PART1	NCRNA00206	prostate androgen-regulated transcript 1 (non-protein coding)	ncRNA
450	chr14	25433868	25436516	+	0	NA	intron (NM_014178, intron 2 of 5)	intron (NM_014178, intron 2 of 5)	83903	NM_014178	29091	Hs.508958	XM_005267556	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
4518	chr4	141010603	141021740	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	59062	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
1702	chr1	65413853	65415675	+	0	NA	intron (NM_002227, intron 1 of 24)	L2|LINE|L2	17423	NM_002227	3716	Hs.207538	XM_005270841	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
4951	chr9	78504717	78506400	+	0	NA	promoter-TSS (NM_001190482)	promoter-TSS (NM_001190482)	-2	NM_006200	5125	Hs.368542	XM_005252039	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6|subtilase	proprotein convertase subtilisin/kexin type 5	protein-coding
1405	chr7	35736184	35737974	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-2307	NM_022373	64224	Hs.643051	NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
3118	chr6	28532641	28535214	+	0	NA	Intergenic	Intergenic	21185	NM_052923	114821	Hs.176980	NM_052923	ENSG00000232040	SCAND3	Buster4|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
4442	chr3	71031297	71032730	+	0	NA	intron (NM_001244815, intron 9 of 15)	intron (NM_001244815, intron 9 of 15)	82061	NM_001244813	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
4141	chr2	17937758	17940348	+	0	NA	intron (NM_001130009, intron 1 of 13)	intron (NM_001130009, intron 1 of 13)	3639	NM_001130009	348654	Hs.467793	XM_005262612	ENSG00000178295	GEN1	Gen	GEN1 Holliday junction 5' flap endonuclease	protein-coding
1729	chr1	152079487	152085396	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	5489	NM_007113	7062	Hs.432416	XM_005245468	ENSG00000159450	TCHH	THH|THL|TRHY	trichohyalin	protein-coding
146	chr10	101185285	101187905	+	0	NA	intron (NM_002079, intron 1 of 8)	intron (NM_002079, intron 1 of 8)	3935	NM_002079	2805	Hs.500756	XM_005269705	ENSG00000120053	GOT1	ASTQTL1|GIG18|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding
3202	chr7	142867537	142871057	+	0	NA	Intergenic	Intergenic	-11215	NM_176881	259285	Hs.553660	NM_176881	ENSG00000236398	TAS2R39	T2R39|T2R57	taste receptor, type 2, member 39	protein-coding
1351	chr6	136672306	136673723	+	0	NA	intron (NM_001198617, intron 14 of 15)	LTR41|LTR|ERVL	-62025	NM_001077441	9774	Hs.486542	XM_005267236	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2-associated transcription factor 1	protein-coding
356	chr12	52076921	52078673	+	0	NA	intron (NM_014191, intron 2 of 26)	intron (NM_014191, intron 2 of 26)	92777	NM_014191	6334	Hs.710638	XM_005269075	ENSG00000196876	SCN8A	CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4	sodium channel, voltage gated, type VIII, alpha subunit	protein-coding
2396	chr2	62518544	62522657	+	0	NA	Intergenic	Intergenic	87639	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
2720	chr3	123370268	123373365	+	0	NA	intron (NM_053025, intron 24 of 33)	L2a|LINE|L2	-32286	NM_053032	4638	Hs.477375	XM_005247492	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
528	chr16	59244004	59245963	+	0	NA	Intergenic	Intergenic	-476722	NM_001286220	2806	Hs.599470	XM_005255894	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	glutamic-oxaloacetic transaminase 2, mitochondrial	protein-coding
164	chr10	19206841	19208278	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-130141	NM_001142308	340895	Hs.646734	NM_001142308		MALRD1	C10orf112|DIET1|bA265G8.2	MAM and LDL receptor class A domain containing 1	protein-coding
4325	chr20	18204895	18206731	+	0	NA	Intergenic	Intergenic	-63114	NM_001282996	7692	Hs.472221	XM_005260813	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
807	chr2	240855581	240858256	+	0	NA	Intergenic	LTR76|LTR|ERV1	25593	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	-	microRNA 4786	ncRNA
3897	chr14	68987526	68989158	+	0	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	272289	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
2040	chr12	20554864	20558976	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	34741	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
2678	chr22	23620244	23625924	+	0	NA	intron (NM_004327, intron 8 of 22)	intron (NM_004327, intron 8 of 22)	18130	NR_033408	26226	Hs.729589	NR_033408		FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
2898	chr4	129519703	129526825	+	0	NA	Intergenic	Intergenic	-207514	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
4379	chr22	28113663	28115121	+	0	NA	Intergenic	Intergenic	83094	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
882	chr21	41220507	41221909	+	0	NA	Intergenic	Intergenic	-18139	NM_006198	5121	Hs.80296	NM_006198	ENSG00000183036	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
1050	chr4	41381710	41384306	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	20206	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4054	chr17	63542209	63544721	+	0	NA	intron (NM_004655, intron 3 of 10)	intron (NM_004655, intron 3 of 10)	14275	NM_004655	8313	Hs.156527	XM_005257716	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
1031	chr4	22943017	22944656	+	0	NA	Intergenic	LTR79|LTR|ERVL	228124	NM_001277225	57733	Hs.653107	NM_001128432	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosidase, beta, acid 3	protein-coding
4585	chr4	169708373	169709749	+	0	NA	intron (NM_016081, intron 10 of 20)	intron (NM_016081, intron 10 of 20)	-44095	NM_001166110	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
2942	chr5	111753279	111756883	+	0	NA	promoter-TSS (NM_022140)	promoter-TSS (NM_022140)	-71	NM_022140	64097	Hs.584954	XM_005272043	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
3401	chrX	100136903	100140951	+	0	NA	Intergenic	Intergenic	-9593	NM_013955	27035	Hs.592227	NM_001271815	ENSG00000007952	NOX1	GP91-2|MOX1|NOH-1|NOH1	NADPH oxidase 1	protein-coding
454	chr14	29434766	29436871	+	0	NA	Intergenic	Intergenic	193908	NR_026731	387978	Hs.633254	NR_026731	ENSG00000186960	C14orf23	c14_5148	chromosome 14 open reading frame 23	ncRNA
3139	chr6	52588410	52591853	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	19826	NR_033760	730152	Hs.742634	NR_033760		GSTA7P	GSTAP2	glutathione S-transferase alpha 7, pseudogene	pseudo
1364	chr6	140298497	140300987	+	0	NA	Intergenic	Intergenic	207532	NR_038399	100132735	Hs.62646	NR_038399		LOC100132735	-	uncharacterized LOC100132735	ncRNA
2538	chr2	180135946	180138546	+	0	NA	Intergenic	Intergenic	-7896	NM_178123	91404	Hs.30977	XM_005246944	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domains 1	protein-coding
4845	chr7	29488392	29490670	+	0	NA	intron (NM_004067, intron 6 of 12)	intron (NM_004067, intron 6 of 12)	-29955	NM_001039936	1124	Hs.710429	XM_005249597	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
634	chr19	42235478	42240776	+	0	NA	Intergenic	MIR|SINE|MIR	-21271	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)	protein-coding
2551	chr2	211026808	211028444	+	0	NA	intron (NM_152519, intron 1 of 14)	L1MCa|LINE|L1	8425	NM_152519	151050	Hs.591638	XM_005246328	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1-like	protein-coding
4774	chr6	44188586	44190180	+	0	NA	intron (NM_004955, intron 1 of 12)	intron (NM_004955, intron 1 of 12)	-1858	NM_001078175	2030	Hs.25450	XM_005248875	ENSG00000112759	SLC29A1	ENT1	solute carrier family 29 (equilibrative nucleoside transporter), member 1	protein-coding
978	chr3	139011317	139013293	+	0	NA	Intergenic	Intergenic	-50556	NM_020191	56945	Hs.745001	XM_005247640	ENSG00000175110	MRPS22	C3orf5|COXPD5|GIBT|MRP-S22|RPMS22	mitochondrial ribosomal protein S22	protein-coding
3324	chr9	35109073	35117509	+	0	NA	intron (NM_025182, intron 1 of 8)	intron (NM_025182, intron 1 of 8)	2602	NM_025182	80256	Hs.301696	XM_005251588	ENSG00000005238	FAM214B	KIAA1539|P1.11659_5|RP11-182N22.6|bA182N22.6	family with sequence similarity 214, member B	protein-coding
3741	chr11	85497951	85500365	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	23020	NM_032943	54843	Hs.369520	XM_005274057	ENSG00000137501	SYTL2	CHR11SYT|EXO4|SGA72M|SLP2|SLP2A	synaptotagmin-like 2	protein-coding
4813	chr6	147305320	147306582	+	0	NA	intron (NR_034115, intron 6 of 10)	MLT1H2|LTR|ERVL-MaLR	-180991	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
3752	chr11	123300730	123302191	+	0	NA	Intergenic	CpG	-49240	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
2144	chr14	65132371	65136525	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-36745	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
378	chr12	88122511	88123974	+	0	NA	Intergenic	Intergenic	55246	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
325	chr12	69516926	69518843	+	0	NA	Intergenic	Intergenic	-115433	NM_007007	11052	Hs.369606	XM_005268588	ENSG00000111605	CPSF6	CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6, 68kDa	protein-coding
889	chr22	28081353	28083792	+	0	NA	Intergenic	MIRb|SINE|MIR	114914	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
4926	chr9	35110091	35112706	+	0	NA	intron (NM_025182, intron 1 of 8)	CpG	4495	NM_025182	80256	Hs.301696	XM_005251588	ENSG00000005238	FAM214B	KIAA1539|P1.11659_5|RP11-182N22.6|bA182N22.6	family with sequence similarity 214, member B	protein-coding
1233	chr5	175171344	175173037	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-51420	NM_006650	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
3390	chr9	128274873	128277224	+	0	NA	intron (NM_001006617, intron 7 of 11)	intron (NM_001006617, intron 7 of 11)	193465	NM_001006619	79109	Hs.495138	XM_005252203	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
1162	chr5	59657282	59659033	+	0	NA	intron (NM_001165899, intron 1 of 16)	intron (NM_001165899, intron 1 of 16)	-125383	NR_024617	25859	Hs.146312	NM_001039499	ENSG00000152931	PART1	NCRNA00206	prostate androgen-regulated transcript 1 (non-protein coding)	ncRNA
3972	chr15	96807349	96809644	+	0	NA	Intergenic	Intergenic	-60661	NM_001145155	7026	Hs.519445	NM_001145155	ENSG00000185551	NR2F2	ARP1|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
684	chr2	18073400	18077903	+	0	NA	intron (NM_002252, intron 1 of 2)	intron (NM_002252, intron 1 of 2)	15727	NM_002252	3790	Hs.414489	XM_005262614	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
211	chr10	101192524	101194766	+	0	NA	Intergenic	Intergenic	-3115	NM_002079	2805	Hs.500756	XM_005269705	ENSG00000120053	GOT1	ASTQTL1|GIG18|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding
2831	chr4	6747784	6752397	+	0	NA	Intergenic	Intergenic	32248	NM_018366	55330	Hs.7570	NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding
3315	chr8	120219949	120222400	+	0	NA	intron (NM_052886, intron 2 of 4)	CpG-25965	564	NM_052886	114569	Hs.201083	NM_052886	ENSG00000147676	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
4946	chr9	36148148	36150093	+	0	NA	intron (NM_001287010, intron 3 of 3)	intron (NM_001287010, intron 3 of 3)	12338	NM_001287013	152007	Hs.493819	XM_005251369	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
1924	chr11	28586343	28590085	+	0	NA	Intergenic	Intergenic	-89119	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
3042	chr5	175223890	175225862	+	0	NA	intron (NM_006650, intron 1 of 4)	intron (NM_006650, intron 1 of 4)	1266	NM_006650	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
1214	chr5	147647601	147648953	+	0	NA	promoter-TSS (NM_001040129)	promoter-TSS (NM_001040129)	-146	NM_001040129	153218	Hs.483771	NM_001040129	ENSG00000214510	SPINK13	HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3	serine peptidase inhibitor, Kazal type 13 (putative)	protein-coding
389	chr12	97504333	97507457	+	0	NA	Intergenic	Intergenic	204651	NM_001135175	121441	Hs.270084	XM_005268644	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
1660	chr1	207909891	207914671	+	0	NA	Intergenic	Intergenic	-13102	NM_002389	4179	Hs.510402	NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
3525	chr1	151342785	151345556	+	0	NA	intron (NM_001258289, intron 1 of 11)	intron (NM_001258289, intron 1 of 11)	1040	NM_001258289	8991	Hs.632460	XM_005245576	ENSG00000143416	SELENBP1	HEL-S-134P|LPSB|SBP56|SP56|hSBP	selenium binding protein 1	protein-coding
3207	chr7	29601403	29607900	+	0	NA	intron (NM_175887, intron 1 of 1)	CpG	1224	NM_175887	222171	Hs.91109	XM_005249653	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
3887	chr14	37442530	37443963	+	0	NA	intron (NM_001171170, intron 1 of 10)	intron (NM_001171170, intron 1 of 10)	-21650	NR_039725	100616280		NR_039725		MIR4503	-	microRNA 4503	ncRNA
966	chr3	114935995	114937743	+	0	NA	Intergenic	Intergenic	-70742	NM_015642	26137	Hs.744879	XM_005247325	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|RP11-553L6.5|ZNF288	zinc finger and BTB domain containing 20	protein-coding
2216	chr15	76484983	76494452	+	0	NA	intron (NM_152335, intron 9 of 10)	MIR|SINE|MIR	62776	NR_028510	7302	Hs.684881	NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
2314	chr17	72437932	72440621	+	0	NA	intron (NM_018653, intron 2 of 3)	intron (NM_018653, intron 2 of 3)	9440	NM_018653	55890	Hs.446438	XM_005257512		GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor, family C, group 5, member C	protein-coding
992	chr3	189289601	189292067	+	0	NA	Intergenic	Intergenic	-58382	NM_001114978	8626	Hs.137569	XM_005247843	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
1954	chr11	62148254	62151922	+	0	NA	intron (NM_001083926, intron 4 of 6)	LTR5_Hs|LTR|ERVK	-36419	NM_003357	7356	Hs.523732	NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
218	chr10	116172280	116173704	+	0	NA	Intergenic	Intergenic	-8455	NM_001287824	84632	Hs.501106	XM_005270232	ENSG00000169129	AFAP1L2	KIAA1914|XB130	actin filament associated protein 1-like 2	protein-coding
2843	chr4	111984067	111986856	+	0	NA	Intergenic	Intergenic	-422182	NM_001204399	5308	Hs.738484	XM_005263064	ENSG00000164093	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
2345	chr18	45493194	45497507	+	0	NA	Intergenic	Intergenic	-37833	NM_001003652	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
3124	chr6	33663871	33666233	+	0	NA	TTS (NM_002224)	TTS (NM_002224)	14476	NM_032340	84300	Hs.745020	NM_032340	ENSG00000137288	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
3391	chr9	128297949	128301332	+	0	NA	intron (NM_001006618, intron 7 of 7)	MIRb|SINE|MIR	169873	NM_001006619	79109	Hs.495138	XM_005252203	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
2973	chr5	52774154	52777291	+	0	NA	promoter-TSS (NM_006350)	promoter-TSS (NM_006350)	-542	NM_006350	10468	Hs.9914	XM_005248400	ENSG00000134363	FST	FS	follistatin	protein-coding
4602	chr5	148864721	148867008	+	0	NA	Intergenic	Intergenic	55655	NR_029686	406937		NR_029686	ENSG00000269936	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
2567	chr2	234576149	234580989	+	0	NA	intron (NM_019075, intron 1 of 4)	AluSx3|SINE|Alu	-1975	NM_021027	54600	Hs.554822	NM_021027	ENSG00000241119	UGT1A9	HLUGP4|LUGP4|UDPGT|UDPGT 1-9|UGT-1I|UGT1-09|UGT1-9|UGT1.9|UGT1AI|UGT1I	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding
2999	chr5	113483060	113485351	+	0	NA	Intergenic	HERVK11D-int|LTR|ERVK	-213811	NM_021614	3781	Hs.98280	NM_001278204	ENSG00000080709	KCNN2	KCa2.2|SK2|SKCA2|SKCa 2|hSK2	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
4321	chr20	13780476	13782010	+	0	NA	intron (NM_001039375, intron 5 of 9)	intron (NM_001039375, intron 5 of 9)	15571	NR_029377	79133	Hs.472165	NM_001039375	ENSG00000101247	NDUFAF5	C20orf7|bA526K24.2|dJ842G6.1	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
3289	chr7	155389514	155391662	+	0	NA	Intergenic	Intergenic	-46615	NM_053043	155435	Hs.591815	XM_005249531	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
3158	chr6	111931212	111932989	+	0	NA	Intergenic	Ricksha_c|DNA|MuDR	-4623	NM_147686	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
2188	chr15	40394698	40396585	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	2646	NM_001003942	90427	Hs.591104	XM_005254757	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
2767	chr3	87366903	87369426	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-42427	NM_001122757	5449	Hs.591654	NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
1778	chr1	209278673	209280337	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-322663	NM_001104548	642587	Hs.510543	XM_005273225		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
3667	chr10	64323646	64324728	+	0	NA	intron (NM_199452, intron 1 of 6)	(TC)n|Simple_repeat|Simple_repeat	43980	NM_199452	22891	Hs.22653	NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
1859	chr10	23105289	23107080	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-102681	NM_005028	5305	Hs.57079	XM_005252470	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
2339	chr18	29896682	29898441	+	0	NA	intron (NM_001242409, intron 2 of 5)	intron (NM_001242409, intron 2 of 5)	127574	NM_005925	4225	Hs.194777	XM_005258275	ENSG00000141434	MEP1B	-	meprin A, beta	protein-coding
160	chr10	12430664	12432232	+	0	NA	intron (NM_020397, intron 1 of 9)	intron (NM_020397, intron 1 of 9)	39865	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
3782	chr12	19835828	19837423	+	0	NA	Intergenic	LTR16A|LTR|ERVL	243110	NM_001267043	121536	Hs.126497	XR_242886		AEBP2	-	AE binding protein 2	protein-coding
98	chr1	176483808	176485558	+	0	NA	intron (NM_020318, intron 1 of 22)	intron (NM_020318, intron 1 of 22)	52376	NM_021936	60676	Hs.187284	XM_005245422	ENSG00000116183	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
1278	chr6	18492986	18494942	+	0	NA	Intergenic	MIRb|SINE|MIR	-78051	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
1048	chr4	41370109	41376297	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	10401	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2901	chr4	139830565	139834490	+	0	NA	Intergenic	Intergenic	-104386	NM_012118	25819	Hs.656047	NM_012118	ENSG00000151014	CCRN4L	CCR4L|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
2434	chr2	10654128	10656082	+	0	NA	Intergenic	Intergenic	-66425	NM_001287188	4953	Hs.467701	XM_005246165	ENSG00000115758	ODC1	ODC	ornithine decarboxylase 1	protein-coding
1381	chr7	27442965	27444467	+	0	NA	Intergenic	Intergenic	161552	NM_001989	2128	Hs.369879	XM_005249639		EVX1	-	even-skipped homeobox 1	protein-coding
1061	chr4	41561657	41565889	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-51016	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2054	chr12	53931098	53933875	+	0	NA	intron (NM_001130060, intron 4 of 11)	intron (NM_001130060, intron 4 of 11)	24718	NR_046221	100652999	Hs.633602	NR_046221	ENSG00000257550	RP11-793H13.3	-	uncharacterized LOC100652999	ncRNA
3792	chr12	47582378	47585718	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	2453	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
3735	chr11	62149206	62151079	+	0	NA	intron (NM_001083926, intron 4 of 6)	LTR5_Hs|LTR|ERVK	-36365	NM_003357	7356	Hs.523732	NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
2785	chr3	109101156	109106995	+	0	NA	Intergenic	Intergenic	-24762	NR_109842	401082	Hs.477089	NM_001145553		FLJ25363	RP11-702L6.4	uncharacterized LOC401082	ncRNA
3224	chr7	1618483	1621217	+	0	NA	intron (NR_027328, intron 3 of 3)	(TCTG)n|Simple_repeat|Simple_repeat	10141	NR_021487	114796	Hs.436146	NR_021487	ENSG00000230487	PSMG3-AS1	AC093734.11	PSMG3 antisense RNA 1 (head to head)	ncRNA
3635	chr10	116079820	116081251	+	0	NA	intron (NM_001001936, intron 5 of 18)	intron (NM_001001936, intron 5 of 18)	81522	NM_001272046	340706	Hs.197741	NM_001272046		VWA2	AMACO|CCSP-2|NET42	von Willebrand factor A domain containing 2	protein-coding
3732	chr11	45288953	45289745	+	0	NA	intron (NM_001247987, intron 2 of 7)	intron (NM_001247987, intron 2 of 7)	18535	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
4921	chr8	125266716	125267593	+	0	NA	Intergenic	Intergenic	-83391	NR_103547	157376	Hs.662360	NR_103547	ENSG00000253868	FER1L6-AS2	C8orf78|RP11-959I15.3	FER1L6 antisense RNA 2	ncRNA
1555	chrX	8835943	8837257	+	0	NA	Intergenic	Intergenic	-67176	NM_174951	171482	Hs.382062	NM_001171186	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9, member A	protein-coding
586	chr17	50104313	50105557	+	0	NA	intron (NM_001082534, intron 3 of 9)	intron (NM_001082534, intron 3 of 9)	131197	NM_020178	56934	Hs.463466	XM_005257523	ENSG00000154975	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase X	protein-coding
2870	chr4	41469301	41481032	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	112364	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
4337	chr20	35981776	35988342	+	0	NA	intron (NM_198291, intron 1 of 13)	intron (NM_198291, intron 1 of 13)	10528	NM_198291	6714	Hs.195659	NM_005417	ENSG00000197122	SRC	ASV|SRC1|c-SRC|p60-Src	v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog	protein-coding
410	chr13	23087194	23088387	+	0	NA	Intergenic	Intergenic	303366	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
2859	chr4	7818319	7829516	+	0	NA	intron (NM_198595, intron 6 of 16)	MIRb|SINE|MIR	68100	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
999	chr3	193575474	193576768	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	135906	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
3193	chr6	158410496	158412592	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	8656	NM_003898	8871	Hs.434494	XM_005267197	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
3019	chr5	135328469	135331256	+	0	NA	Intergenic	Intergenic	-34722	NM_000358	7045	Hs.369397	NM_000358	ENSG00000120708	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor, beta-induced, 68kDa	protein-coding
1185	chr5	111742436	111744294	+	0	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	11645	NM_022140	64097	Hs.584954	XM_005272043	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
2169	chr15	70990898	70996484	+	0	NA	intron (NM_018003, intron 1 of 18)	intron (NM_018003, intron 1 of 18)	929	NM_001008224	55075	Hs.108049	XM_005254527	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
4637	chr5	87956147	87957692	+	0	NA	intron (NR_015436, intron 3 of 4)	CpG	5838	NR_030741	407047		NR_030741	ENSG00000245526	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2	microRNA 9-2	ncRNA
1741	chr1	169748357	169751419	+	0	NA	Intergenic	L1PA6|LINE|L1	14173	NM_033418	92342	Hs.33922	XM_005245606	ENSG00000171806	METTL18	AsTP2|C1orf156|HPM1	methyltransferase like 18	protein-coding
4211	chr2	102615487	102616219	+	0	NA	intron (NR_048564, intron 1 of 8)	intron (NR_048564, intron 1 of 8)	429	NR_048564	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor, type II	protein-coding
1315	chr6	79948403	79950207	+	0	NA	Intergenic	Intergenic	-4850	NM_004242	9324	Hs.77558	XM_005248768	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
1130	chr5	158644750	158646414	+	0	NA	Intergenic	LTR78|LTR|ERV1	-8521	NM_001199380	153830	Hs.349306	XM_005265826	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
4599	chr5	111754329	111756390	+	0	NA	promoter-TSS (NM_022140)	promoter-TSS (NM_022140)	79	NR_027706	54508	Hs.591264	NR_027706		EPB41L4A-AS2	-	EPB41L4A antisense RNA 2 (head to head)	ncRNA
189	chr10	70960100	70964966	+	0	NA	intron (NM_003171, intron 12 of 14)	intron (NM_003171, intron 12 of 14)	-17526	NM_025130	80201	Hs.522988	NM_025130	ENSG00000156510	HKDC1	-	hexokinase domain containing 1	protein-coding
4918	chr8	110618760	110620020	+	0	NA	intron (NM_001099756, intron 2 of 5)	intron (NM_001099756, intron 2 of 5)	36029	NM_001099756	55638	Hs.390738	XM_005250999	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
2330	chr18	12004478	12007636	+	0	NA	intron (NM_014214, intron 2 of 7)	intron (NM_014214, intron 2 of 7)	24630	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
2849	chr4	154072456	154076392	+	0	NA	intron (NM_001130067, intron 1 of 11)	CpG	154	NM_001130067	23321	Hs.435711	XM_005262872	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
480	chr14	81995208	81997162	+	0	NA	intron (NM_001244984, intron 1 of 7)	intron (NM_001244984, intron 1 of 7)	4020	NM_001244984	6400	Hs.181300	XM_005267988	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
107	chr1	183684817	183686453	+	0	NA	intron (NM_015149, intron 1 of 18)	MLT1J1|LTR|ERVL-MaLR	-63187	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
3810	chr12	74722087	74722739	+	0	NA	Intergenic	Intergenic	-36002	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
87	chr1	158114448	158116221	+	0	NA	Intergenic	MER70-int|LTR|ERVL	-4904	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	RP11-404O13.1	-	hCG1654703	ncRNA
2385	chr19	43684752	43689101	+	0	NA	intron (NM_002781, intron 2 of 5)	intron (NM_002781, intron 2 of 5)	3762	NM_001130014	5673	Hs.654415	NM_001130014	ENSG00000204941	PSG5	FL-NCA-3|PSG	pregnancy specific beta-1-glycoprotein 5	protein-coding
4099	chr19	29487867	29491844	+	0	NA	Intergenic	Intergenic	-3607	NR_040036	100505835	Hs.176539	NR_040036	ENSG00000267014	LOC100505835	-	uncharacterized LOC100505835	ncRNA
4339	chr20	36620632	36621574	+	0	NA	intron (NM_014657, intron 8 of 8)	intron (NM_014657, intron 8 of 8)	40730	NM_014657	9675	Hs.655481	XM_005260621	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
1832	chr10	73855035	73859823	+	0	NA	intron (NR_045564, intron 9 of 9)	intron (NR_045564, intron 9 of 9)	-8639	NM_001134434	9806	Hs.523009	XM_005270302	ENSG00000107742	SPOCK2	testican-2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	protein-coding
2704	chr3	15331129	15336643	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	38195	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	AC087590.3	SH3BP5 antisense RNA 1	ncRNA
3796	chr12	50353267	50354567	+	0	NA	Intergenic	Intergenic	-1362	NM_001651	362	Hs.298023	XM_005268838		AQP5	AQP-5|PPKB	aquaporin 5	protein-coding
221	chr10	127570056	127572513	+	0	NA	Intergenic	Intergenic	-1400	NM_018180	55760	Hs.370292	NM_018180	ENSG00000089876	DHX32	DDX32|DHLP1	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding
3147	chr6	80161907	80165142	+	0	NA	Intergenic	Intergenic	83623	NM_181714	167691	Hs.21945	XM_005248664	ENSG00000135338	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
4486	chr3	127798488	127804131	+	0	NA	intron (NM_003707, intron 10 of 10)	intron (NM_003707, intron 10 of 10)	30097	NM_013336	29927	Hs.518236	XM_005247404	ENSG00000058262	SEC61A1	HSEC61|SEC61|SEC61A	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding
1424	chr7	107866526	107868526	+	0	NA	intron (NM_001037132, intron 5 of 29)	L2a|LINE|L2	13088	NM_001037132	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
3176	chr6	136047143	136050934	+	0	NA	Intergenic	Intergenic	-123796	NM_018945	27115	Hs.744230	XM_005266931	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
417	chr13	32604684	32606686	+	0	NA	promoter-TSS (NR_103839)	promoter-TSS (NR_103839)	91	NR_103839	100507099	Hs.536364	NR_103839		FRY-AS1	RP11-207N4.2	FRY antisense RNA 1	ncRNA
4623	chr5	62348458	62349691	+	0	NA	Intergenic	Intergenic	474512	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
4547	chr4	74472366	74473868	+	0	NA	intron (NM_201431, intron 2 of 10)	L2c|LINE|L2	13170	NM_177532	166824	Hs.529677	NM_001270391	ENSG00000169435	RASSF6	-	Ras association (RalGDS/AF-6) domain family member 6	protein-coding
1530	chr9	78795050	78796936	+	0	NA	intron (NM_006200, intron 15 of 20)	intron (NM_006200, intron 15 of 20)	213451	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
4388	chr22	27870946	27872223	+	0	NA	Intergenic	Intergenic	325902	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
2504	chr2	102614344	102616975	+	0	NA	intron (NR_048564, intron 1 of 8)	intron (NR_048564, intron 1 of 8)	235	NR_048564	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor, type II	protein-coding
3819	chr12	88199345	88201011	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-21690	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
734	chr2	76385744	76387192	+	0	NA	Intergenic	MIRb|SINE|MIR	-448357	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
2798	chr3	120135059	120138608	+	0	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	-22257	NR_029584	406975		NR_029584		MIR198	MIRN198|miR-198	microRNA 198	ncRNA
2952	chr5	156692241	156698644	+	0	NA	promoter-TSS (NM_014376)	promoter-TSS (NM_014376)	-920	NM_014376	26999	Hs.519702	XM_005265883	ENSG00000055163	CYFIP2	PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
2621	chr20	14199501	14202608	+	0	NA	intron (NM_080676, intron 3 of 16)	L1PB1|LINE|L1	117259	NM_198391	23767	Hs.41296	XM_005260682	ENSG00000125848	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
3724	chr11	28636349	28637338	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-137748	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
1440	chr7	137620733	137622484	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	-16486	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
2524	chr2	150623505	150627063	+	0	NA	intron (NR_110240, intron 2 of 2)	intron (NR_110240, intron 2 of 2)	-180954	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
381	chr12	88152484	88153638	+	0	NA	Intergenic	Intergenic	25427	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
1471	chr8	97455897	97457495	+	0	NA	Intergenic	Intergenic	-49186	NM_002998	6383	Hs.598247	XM_005251019	ENSG00000169439	SDC2	CD362|HSPG|HSPG1|SYND2	syndecan 2	protein-coding
5020	chrX	151038546	151040861	+	0	NA	Intergenic	Intergenic	-41658	NM_001011548	4103	Hs.37107	XM_005274677	ENSG00000147381	MAGEA4	CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B	melanoma antigen family A, 4	protein-coding
1814	chr10	104068939	104073778	+	0	NA	intron (NM_004193, intron 3 of 39)	intron (NM_004193, intron 3 of 39)	66103	NM_001199379	8729	Hs.290243	XM_005270261	ENSG00000107862	GBF1	ARF1GEF	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
2966	chr5	32851185	32853858	+	0	NA	Intergenic	Intergenic	-95028	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
4330	chr20	22742771	22745969	+	0	NA	Intergenic	Intergenic	-156215	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
373	chr12	77515373	77517230	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-56941	NM_203394	144455	Hs.416375	NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
3379	chr9	111234946	111237340	+	0	NA	Intergenic	Intergenic	382132	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
2078	chr12	111371068	111373397	+	0	NA	Intergenic	Intergenic	-2174	NR_036513	100131138	Hs.152129	NR_036513	ENSG00000185847	LOC100131138	-	uncharacterized LOC100131138	ncRNA
773	chr2	183779349	183781579	+	0	NA	Intergenic	Intergenic	-48966	NM_001463	2487	Hs.128453	NM_001463	ENSG00000162998	FRZB	FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ	frizzled-related protein	protein-coding
1247	chr6	125632311	125635395	+	0	NA	Intergenic	MIRb|SINE|MIR	-10571	NM_016063	51020	Hs.32826	XR_245538	ENSG00000111906	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
1752	chr1	183687572	183690166	+	0	NA	intron (NM_015149, intron 1 of 18)	AluSx|SINE|Alu	-66421	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
1309	chr6	52876895	52879210	+	0	NA	intron (NM_016513, intron 10 of 14)	MIR|SINE|MIR	-17874	NM_001512	2941	Hs.485557	XM_005249035	ENSG00000170899	GSTA4	GSTA4-4|GTA4	glutathione S-transferase alpha 4	protein-coding
1576	chrX	69698462	69700531	+	0	NA	intron (NM_001166278, intron 2 of 11)	intron (NM_001166278, intron 2 of 11)	-23652	NR_109801	100873930	Hs.571699	XR_244507		DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
3448	chr1	43426124	43434179	+	0	NA	intron (NR_033967, intron 1 of 3)	MIR|SINE|MIR	-5304	NM_006516	6513	Hs.473721	XM_005271135	ENSG00000117394	SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding
4508	chr3	194029854	194031355	+	0	NA	promoter-TSS (NR_024480)	promoter-TSS (NR_024480)	-11	NR_024480	100131551	Hs.606465	NR_024480	ENSG00000214145	LINC00887	RP11-513G11.1	long intergenic non-protein coding RNA 887	ncRNA
2874	chr4	74471700	74476582	+	0	NA	intron (NM_201431, intron 2 of 10)	intron (NM_201431, intron 2 of 10)	12146	NM_177532	166824	Hs.529677	NM_001270391	ENSG00000169435	RASSF6	-	Ras association (RalGDS/AF-6) domain family member 6	protein-coding
1622	chr1	18805921	18809514	+	0	NA	exon (NM_152375, exon 1 of 1)	exon (NM_152375, exon 1 of 1)	293	NM_152375	127707	Hs.710799	XM_005245739	ENSG00000179023	KLHDC7A	RP11-422P22.2	kelch domain containing 7A	protein-coding
3685	chr10	91134126	91134771	+	0	NA	Intergenic	Intergenic	-3365	NM_001010987	439996	Hs.500491	NM_001010987	ENSG00000204010	IFIT1B	IFIT1L|bA149I23.6	interferon-induced protein with tetratricopeptide repeats 1B	protein-coding
4457	chr3	106447027	106448151	+	0	NA	Intergenic	Intergenic	511896	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	RP11-280F2.2	long intergenic non-protein coding RNA 882	ncRNA
975	chr3	131882733	131884181	+	0	NA	Intergenic	Intergenic	-125007	NM_153429	131034	Hs.199877	XM_005247105	ENSG00000196353	CPNE4	COPN4|CPN4	copine IV	protein-coding
3605	chr1	228985798	228987150	+	0	NA	Intergenic	LTR2|LTR|ERV1	115650	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
1911	chr10	116851872	116854365	+	0	NA	promoter-TSS (NM_207303)	promoter-TSS (NM_207303)	-6	NM_001276282	26033	Hs.501127	NM_001276282	ENSG00000107518	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin-like 1	protein-coding
2856	chr4	1074354	1077403	+	0	NA	intron (NM_001131034, intron 5 of 9)	FRAM|SINE|Alu	31474	NM_001193318	285498	Hs.248290	XM_005272274	ENSG00000178222	RNF212	ZHP3	ring finger protein 212	protein-coding
2199	chr15	62401931	62404076	+	0	NA	Intergenic	Intergenic	43827	NM_207322	145741	Hs.202656	NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
5004	chrX	40726068	40727199	+	0	NA	Intergenic	Intergenic	-34184	NR_027761	100132831	Hs.729923	NR_027761		LOC100132831	-	A20-binding inhibitor of NF-kappaB activation 2 pseudogene	pseudo
3709	chr11	73579367	73580951	+	0	NA	Intergenic	Intergenic	-7585	NM_001267806	80227	Hs.525017	XM_005274308	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase-associated factor 1	protein-coding
3002	chr5	123035107	123037543	+	0	NA	Intergenic	Intergenic	155214	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
4173	chr2	54766883	54768050	+	0	NA	intron (NM_003128, intron 2 of 35)	intron (NM_003128, intron 2 of 35)	11107	NR_002229	56969	Hs.732136	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
3113	chr6	22235722	22239026	+	0	NA	Intergenic	Intergenic	60356	NM_000948	5617	Hs.735971	NM_000948	ENSG00000172179	PRL	-	prolactin	protein-coding
1893	chr10	91234392	91237556	+	0	NA	intron (NM_213606, intron 2 of 7)	intron (NM_213606, intron 2 of 7)	59339	NM_213606	387700	Hs.530338	XM_005269812	ENSG00000152779	SLC16A12	CJMG|MCT12	solute carrier family 16, member 12	protein-coding
1646	chr1	171880428	171886722	+	0	NA	intron (NM_015569, intron 1 of 20)	AluSp|SINE|Alu	72957	NM_001136127	26052	Hs.654775	XM_005245079	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
3010	chr5	131006465	131009922	+	0	NA	exon (NM_133372, exon 14 of 18)	exon (NM_133372, exon 14 of 18)	-37264	NM_001164390	51735	Hs.483329	XM_005272013	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
746	chr2	86974045	86976042	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-26798	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
534	chr16	65580813	65585984	+	0	NA	intron (NR_027755, intron 2 of 8)	intron (NR_027755, intron 2 of 8)	26805	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
3572	chr1	201593715	201595695	+	0	NA	Intergenic	Intergenic	-22745	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
4286	chr20	5815601	5817513	+	0	NA	intron (NM_152504, intron 2 of 2)	intron (NM_152504, intron 2 of 2)	-75417	NM_001819	1114	Hs.516874	NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B (secretogranin 1)	protein-coding
3690	chr10	93998168	94001396	+	0	NA	exon (NM_014912, exon 2 of 10)	exon (NM_014912, exon 2 of 10)	3254	NM_001178137	22849	Hs.701732	XM_005269630	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
744	chr2	86875669	86877144	+	0	NA	intron (NM_001198954, intron 2 of 7)	L1MEc|LINE|L1	-25406	NM_005667	7844	Hs.731426	XM_005264554	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
151	chr10	59751550	59753541	+	0	NA	Intergenic	Intergenic	275149	NM_152230	253430	Hs.30280	XM_005269670	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
3822	chr12	92945416	92946350	+	0	NA	Intergenic	Intergenic	-123959	NM_001025232	574016	Hs.551199	NM_001025232	ENSG00000205057	CLLU1OS	-	chronic lymphocytic leukemia up-regulated 1 opposite strand	protein-coding
1952	chr11	39562682	39564603	+	0	NA	Intergenic	L1M3b|LINE|L1	751038	NR_047674	57689	Hs.745123	XM_005253030	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
4562	chr4	111984675	111986623	+	0	NA	Intergenic	Intergenic	-422370	NM_001204399	5308	Hs.738484	XM_005263064	ENSG00000164093	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
287	chr11	110633092	110635085	+	0	NA	Intergenic	Intergenic	-50176	NM_001258418	57569	Hs.6136	XM_005271628	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
4914	chr8	97535111	97537458	+	0	NA	intron (NM_002998, intron 1 of 4)	intron (NM_002998, intron 1 of 4)	30402	NM_002998	6383	Hs.598247	XM_005251019	ENSG00000169439	SDC2	CD362|HSPG|HSPG1|SYND2	syndecan 2	protein-coding
475	chr14	72269856	72271564	+	0	NA	Intergenic	Intergenic	-128107	NM_001204423	9628	Hs.509872	XM_005268231	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
932	chr3	29798681	29802174	+	0	NA	intron (NM_001003792, intron 5 of 13)	intron (NM_001003792, intron 5 of 13)	477624	NM_001177711	27303	Hs.221436	XM_005265060	ENSG00000144642	RBMS3	-	RNA binding motif, single stranded interacting protein 3	protein-coding
2595	chr20	24984982	24987533	+	0	NA	TTS (NM_001252676)	TTS (NM_001252676)	-12832	NM_020531	57136	Hs.472330	XM_005260763	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
3908	chr14	92220047	92223073	+	0	NA	Intergenic	L3b|LINE|CR1	-23147	NM_024764	79820	Hs.131755	XM_005268066	ENSG00000133962	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
3858	chr13	34593462	34594932	+	0	NA	Intergenic	Intergenic	201991	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
1525	chr9	72509532	72511370	+	0	NA	intron (NM_001010940, intron 5 of 5)	intron (NM_001010940, intron 5 of 5)	74720	NM_001010940	138255	Hs.444459	XM_005251705	ENSG00000204711	C9orf135	-	chromosome 9 open reading frame 135	protein-coding
515	chr15	68784615	68787271	+	0	NA	Intergenic	Intergenic	-61451	NM_001004439	22801	Hs.458733	XM_005254227	ENSG00000137809	ITGA11	HsT18964|RP11-709B3.2	integrin, alpha 11	protein-coding
4047	chr17	60188529	60189512	+	0	NA	Intergenic	AluSq2|SINE|Alu	-46377	NM_005121	9969	Hs.282678	XM_005257898	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
2545	chr2	201237256	201239655	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	64782	NM_001282744	26010	Hs.120323	XM_005246454	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
2761	chr3	71189541	71192101	+	0	NA	intron (NM_001244808, intron 6 of 20)	L2b|LINE|L2	-10729	NM_001244815	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
4871	chr7	99391954	99393413	+	0	NA	Intergenic	Intergenic	-10872	NM_001202855	1576	Hs.728751	NM_001202855		CYP3A4	CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1	cytochrome P450, family 3, subfamily A, polypeptide 4	protein-coding
1107	chr4	152461249	152463549	+	0	NA	intron (NM_001109977, intron 3 of 13)	intron (NM_001109977, intron 3 of 13)	132001	NM_001109977	729830	Hs.633810	XM_005263199	ENSG00000164142	FAM160A1	-	family with sequence similarity 160, member A1	protein-coding
138	chr1	233451123	233452747	+	0	NA	Intergenic	Intergenic	-11579	NM_032435	84451	Hs.547779	NM_032435	ENSG00000143674	KIAA1804	MLK4|RP5-862P8.2|dJ862P8.3	mixed lineage kinase 4	protein-coding
2996	chr5	111560982	111566783	+	0	NA	intron (NM_022140, intron 12 of 22)	MER102b|DNA|hAT-Charlie	66700	NR_002922	654322	Hs.689709	NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
3499	chr1	52202132	52204392	+	0	NA	intron (NM_148905, intron 1 of 18)	intron (NM_148905, intron 1 of 18)	7776	NM_148905	114883	Hs.738830	NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein-like 9	protein-coding
3838	chr12	117932263	117934260	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-133654	NM_001204218	4842	Hs.735734	XM_005253885	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
724	chr2	70555634	70557212	+	0	NA	Intergenic	Intergenic	-27203	NM_032822	84908	Hs.516077	XM_005264619	ENSG00000035141	FAM136A	-	family with sequence similarity 136, member A	protein-coding
4104	chr19	13164144	13165687	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	29520	NM_001271043	4784	Hs.257970	XM_005259917	ENSG00000008441	NFIX	MRSHSS|NF1A|SOTOS2	nuclear factor I/X (CCAAT-binding transcription factor)	protein-coding
3598	chr1	221290084	221292882	+	0	NA	Intergenic	Intergenic	218155	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
3534	chr1	154399250	154401237	+	0	NA	intron (NM_000565, intron 1 of 9)	intron (NM_000565, intron 1 of 9)	22574	NM_181359	3570	Hs.135087	XM_005245138	ENSG00000160712	IL6R	CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
3958	chr15	79280343	79281876	+	0	NA	intron (NM_002891, intron 23 of 27)	L3|LINE|CR1	16893	NM_153815	5923	Hs.459035	XM_005254578	ENSG00000058335	RASGRF1	CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1	Ras protein-specific guanine nucleotide-releasing factor 1	protein-coding
1195	chr5	124362101	124363792	+	0	NA	Intergenic	Intergenic	-9578	NR_109882	101927421	Hs.638668	XR_246576		RP11-257I8.2	-	uncharacterized LOC101927421	ncRNA
3831	chr12	106423923	106424989	+	0	NA	Intergenic	Intergenic	109355	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
1327	chr6	104609276	104611321	+	0	NA	Intergenic	L1M1|LINE|L1	697496	NR_104424	57531	Hs.434340	XM_005267071	ENSG00000085382	HACE1	-	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
2192	chr15	45625572	45627497	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-44364	NR_033252	145663	Hs.729565	NR_033252		GATM-AS1	-	GATM antisense RNA 1	ncRNA
4655	chr5	121498440	121502115	+	0	NA	intron (NM_001195535, intron 1 of 2)	intron (NM_001195535, intron 1 of 2)	4406	NM_001195535	100505841	Hs.733368	NM_001195535		LOC100505841	-	zinc finger protein 474-like	protein-coding
2667	chr21	37559717	37562305	+	0	NA	intron (NM_005128, intron 2 of 36)	intron (NM_005128, intron 2 of 36)	24172	NM_005128	9980	Hs.204575	XM_005261085	ENSG00000142197	DOPEY2	21orf5|C21orf5	dopey family member 2	protein-coding
1995	chr12	20149819	20154801	+	0	NA	Intergenic	Intergenic	-15309	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
333	chr12	10343550	10345552	+	0	NA	TTS (NM_153022)	TTS (NM_153022)	12994	NM_153022	120939	Hs.226422	XM_005253298	ENSG00000165685	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
4080	chr18	45549709	45550547	+	0	NA	Intergenic	Intergenic	-92611	NM_001003652	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
4040	chr17	40623395	40626896	+	0	NA	intron (NM_005177, intron 5 of 20)	intron (NM_005177, intron 5 of 20)	14283	NM_001130020	535	Hs.463074	XM_005257459	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	ATPase, H+ transporting, lysosomal V0 subunit a1	protein-coding
4427	chr3	47010828	47013584	+	0	NA	intron (NM_001277074, intron 1 of 6)	intron (NM_001277074, intron 1 of 6)	5785	NR_102269	151903	Hs.745081	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
4451	chr3	100783999	100786191	+	0	NA	Intergenic	Intergenic	-72761	NM_015429	25890	Hs.477015	XM_005247281	ENSG00000154175	ABI3BP	NESHBP|TARSH	ABI family, member 3 (NESH) binding protein	protein-coding
3985	chr16	50650176	50653108	+	0	NA	intron (NM_033119, intron 4 of 9)	intron (NM_033119, intron 4 of 9)	63622	NM_153337	124460	Hs.715778	NM_001144972	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
2780	chr3	106146030	106148669	+	0	NA	Intergenic	Intergenic	-559462	NM_170662	868	Hs.430589	XM_005247852	ENSG00000114423	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
446	chr14	23610528	23612311	+	0	NA	intron (NM_001267036, intron 2 of 8)	intron (NM_001267036, intron 2 of 8)	12240	NM_182728	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 (amino acid transporter light chain, L system), member 8	protein-coding
3901	chr14	77772788	77774535	+	0	NA	intron (NM_013382, intron 2 of 20)	intron (NM_013382, intron 2 of 20)	13564	NM_013382	29954	Hs.132989	NM_013382	ENSG00000009830	POMT2	LGMD2N|MDDGA2|MDDGB2|MDDGC2	protein-O-mannosyltransferase 2	protein-coding
2181	chr15	32968195	32972889	+	0	NA	intron (NM_003020, intron 2 of 5)	L1ME4a|LINE|L1	36672	NM_003020	6447	Hs.156540	XM_005254595	ENSG00000166922	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V (7B2 protein)	protein-coding
2229	chr15	91112145	91116812	+	0	NA	intron (NM_001042574, intron 2 of 14)	L2b|LINE|L2	41360	NM_022769	64784	Hs.567572	XM_005254968	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
1582	chrX	76194441	76198829	+	0	NA	Intergenic	Charlie18a|DNA|hAT-Charlie	-56850	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
2842	chr4	100367474	100369692	+	0	NA	Intergenic	Intergenic	-11916	NM_000673	131	Hs.389	NM_000673	ENSG00000196344	ADH7	ADH4	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding
1599	chrX	112062126	112063647	+	0	NA	intron (NM_133265, intron 2 of 11)	intron (NM_133265, intron 2 of 11)	3468	NM_001113490	154796	Hs.528051	XM_005262087	ENSG00000126016	AMOT	-	angiomotin	protein-coding
2306	chr17	62149771	62154892	+	0	NA	intron (NM_001433, intron 5 of 21)	intron (NM_001433, intron 5 of 21)	-54337	NM_001099787	3384	Hs.431460	NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
3013	chr5	132945704	132949075	+	0	NA	intron (NM_015082, intron 1 of 15)	CpG	834	NM_015082	23105	Hs.483390	NM_015082	ENSG00000053108	FSTL4	-	follistatin-like 4	protein-coding
1149	chr5	32779410	32782093	+	0	NA	intron (NM_000908, intron 4 of 7)	intron (NM_000908, intron 4 of 7)	69313	NM_001204375	4883	Hs.619466	XM_005248309	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
2900	chr4	129697057	129699750	+	0	NA	Intergenic	MIRb|SINE|MIR	-32375	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
2283	chr17	1362408	1364875	+	0	NA	Intergenic	Intergenic	-4080	NM_005206	1398	Hs.461896	NM_005206	ENSG00000167193	CRK	CRKII|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding
2603	chr20	56246475	56296700	+	0	NA	intron (NM_199171, intron 1 of 3)	MIRb|SINE|MIR	-5907	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
2407	chr2	54769180	54776498	+	0	NA	intron (NM_003128, intron 2 of 35)	MIR3|SINE|MIR	-12692	NM_178313	6711	Hs.705692	XM_005264517	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
4955	chr9	85641160	85645341	+	0	NA	intron (NM_152573, intron 1 of 16)	intron (NM_152573, intron 1 of 16)	34793	NM_152573	158158	Hs.129136	XM_005251730	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
2695	chr22	27607629	27610143	+	0	NA	Intergenic	Intergenic	555440	NR_033320	440823	Hs.517502	NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2	myocardial infarction associated transcript (non-protein coding)	ncRNA
1238	chr6	125566059	125568345	+	0	NA	intron (NM_001003397, intron 3 of 4)	L1PBa|LINE|L1	56080	NM_016063	51020	Hs.32826	XR_245538	ENSG00000111906	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
1559	chrX	38083790	38085337	+	0	NA	Intergenic	Intergenic	-4386	NM_001170750	8406	Hs.15154	NM_001170750	ENSG00000101955	SRPX	DRS|ETX1|SRPX1	sushi-repeat containing protein, X-linked	protein-coding
2866	chr4	38158454	38160423	+	0	NA	Intergenic	Intergenic	37863	NM_001253915	23216	Hs.176503	XM_005262646	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
1793	chr1	225060108	225063986	+	0	NA	Intergenic	Intergenic	-55309	NM_001145154	127602	Hs.133977	NM_001145154	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein, axonemal, heavy chain 14	protein-coding
7	chr1	65451462	65454581	+	0	NA	Intergenic	Intergenic	-20834	NM_002227	3716	Hs.207538	XM_005270841	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
1701	chr1	61915307	61921514	+	0	NA	intron (NM_001134673, intron 10 of 10)	intron (NM_001134673, intron 10 of 10)	-199220	NR_104180	645030	Hs.632410	XR_246331		RP5-833A20.1	-	uncharacterized LOC645030	ncRNA
2443	chr2	27242431	27245482	+	0	NA	intron (NM_012326, intron 1 of 6)	MER2|DNA|TcMar-Tigger	-11818	NM_001083590	54867	Hs.533934	XM_005264381	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
1937	chr11	13894263	13896090	+	0	NA	Intergenic	Intergenic	-89008	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
4688	chr5	166721353	166723176	+	0	NA	intron (NM_001122679, intron 1 of 28)	intron (NM_001122679, intron 1 of 28)	10421	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
255	chr11	28678158	28680488	+	0	NA	Intergenic	Intergenic	-180228	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
2230	chr15	91998600	92000644	+	0	NA	Intergenic	L1PB1|LINE|L1	-6947	NR_110106	101926928	Hs.638788	XR_243232	ENSG00000258551	RP11-661P17.1	-	uncharacterized LOC101926928	ncRNA
4274	chr2	239208258	239209146	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-11495	NM_022817	8864	Hs.58756	XM_005246111	ENSG00000132326	PER2	FASPS|FASPS1	period circadian clock 2	protein-coding
4740	chr6	13307078	13309101	+	0	NA	intron (NM_001258457, intron 4 of 6)	intron (NM_001258457, intron 4 of 6)	-12271	NM_001242698	100130357	Hs.657498	XM_005248776		RP1-257A7.4	-	uncharacterized LOC100130357	protein-coding
182	chr10	62546719	62548873	+	0	NA	TTS (NM_001170407)	TTS (NM_001170407)	9584	NM_001170407	983	Hs.732435	XM_005270303	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin-dependent kinase 1	protein-coding
3422	chrX	56155157	56158898	+	0	NA	Intergenic	L1PA3|LINE|L1	-101795	NM_007250	11279	Hs.646614	XM_005261977	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
4146	chr2	20000607	20002875	+	0	NA	Intergenic	MIRb|SINE|MIR	-66874	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	AC013400.2	long intergenic non-protein coding RNA 954	ncRNA
3809	chr12	71038588	71040896	+	0	NA	intron (NR_073474, intron 9 of 10)	intron (NR_073474, intron 9 of 10)	-8522	NM_001109754	5787	Hs.434375	XR_245948	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
815	chr20	22723706	22727327	+	0	NA	Intergenic	Intergenic	-137361	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
3486	chr1	39623013	39626271	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	74803	NM_012090	23499	Hs.692278	XM_005270694	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
167	chr10	20206651	20213534	+	0	NA	intron (NM_001282736, intron 1 of 12)	AluJr|SINE|Alu	104720	NM_032812	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
692	chr2	29885656	29886966	+	0	NA	intron (NM_004304, intron 3 of 28)	C-rich|Low_complexity|Low_complexity	258166	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
4961	chr9	88741628	88743053	+	0	NA	Intergenic	Intergenic	-27224	NM_177937	51280	Hs.494337	XM_005252040	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
1907	chr10	114150536	114155310	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	16967	NM_016234	51703	Hs.11638	XM_005269897	ENSG00000197142	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long-chain family member 5	protein-coding
3564	chr1	200451831	200453599	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-73529	NM_012482	23528	Hs.735801	NM_001281293	ENSG00000162702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
854	chr20	24980105	24981996	+	0	NA	Intergenic	Intergenic	-7625	NM_020531	57136	Hs.472330	XM_005260763	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
4971	chr9	101015355	101016330	+	0	NA	intron (NM_001267571, intron 1 of 12)	intron (NM_001267571, intron 1 of 12)	2161	NR_051978	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
3120	chr6	30662090	30664346	+	0	NA	Intergenic	L1MB5|LINE|L1	-4021	NM_007243	11270	Hs.519993	NM_001270707	ENSG00000137404	NRM	NRM29	nurim (nuclear envelope membrane protein)	protein-coding
3769	chr12	1627922	1629121	+	0	NA	Intergenic	Intergenic	18864	NR_028415	100292680	Hs.391695	NR_028415		LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
1174	chr5	82805125	82806622	+	0	NA	intron (NM_004385, intron 5 of 14)	intron (NM_004385, intron 5 of 14)	38380	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
4023	chr17	81066182	81068099	+	0	NA	Intergenic	Intergenic	29573	NM_001004431	284207	Hs.378821	XM_005256349	ENSG00000176845	METRNL	-	meteorin, glial cell differentiation regulator-like	protein-coding
510	chr15	46093897	46095669	+	0	NA	Intergenic	Intergenic	167845	NM_021199	58472	Hs.743355	XM_005254571	ENSG00000137767	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
393	chr12	102749714	102752372	+	0	NA	Intergenic	Intergenic	121386	NM_001111284	3479	Hs.160562	XM_005268835	ENSG00000017427	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
3020	chr5	137093604	137098474	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-6000	NM_006805	10949	Hs.645902	NM_006805	ENSG00000177733	HNRNPA0	HNRPA0	heterogeneous nuclear ribonucleoprotein A0	protein-coding
658	chr2	69516036	69520664	+	0	NA	Intergenic	Intergenic	96036	NM_001244710	2673	Hs.580300	NM_001244710	ENSG00000198380	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
3262	chr7	98759519	98761083	+	0	NA	Intergenic	Intergenic	-18558	NM_001199847	57154	Hs.189329	XM_005250507	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
274	chr11	85861928	85863998	+	0	NA	Intergenic	Intergenic	-82040	NM_001206947	8301	Hs.163893	XM_005274322	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
3550	chr1	180554298	180555384	+	0	NA	Intergenic	Intergenic	-46305	NM_001135669	9213	Hs.227656	NM_001135669	ENSG00000143324	XPR1	SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
4786	chr6	80162048	80164945	+	0	NA	Intergenic	Intergenic	83651	NM_181714	167691	Hs.21945	XM_005248664	ENSG00000135338	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
4392	chr22	35706708	35709508	+	0	NA	intron (NR_024195, intron 1 of 13)	AluSg7|SINE|Alu	12311	NR_024195	10043	Hs.474705	NM_001135729	ENSG00000100284	TOM1	-	target of myb1 (chicken)	protein-coding
877	chr21	39630006	39632797	+	0	NA	intron (NM_001276435, intron 2 of 4)	intron (NM_001276435, intron 2 of 4)	2675	NM_170736	3772	Hs.411299	XM_005260975	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
1508	chr9	4333755	4335695	+	0	NA	Intergenic	Intergenic	-34690	NM_001042413	169792	Hs.162125	XM_005251386	ENSG00000107249	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
3034	chr5	156890778	156892464	+	0	NA	intron (NM_001172292, intron 2 of 4)	L2c|LINE|L2	4594	NM_001172292	348938	Hs.4285	NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN	NIPA-like domain containing 4	protein-coding
1771	chr1	204052230	204054690	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	11214	NM_005686	9580	Hs.201671	XM_005245623	ENSG00000143842	SOX13	ICA12|Sox-13	SRY (sex determining region Y)-box 13	protein-coding
1128	chr5	123976346	123978224	+	0	NA	intron (NM_020747, intron 6 of 8)	intron (NM_020747, intron 6 of 8)	103520	NM_020747	57507	Hs.266616	XM_005272037	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
2891	chr4	107504019	107506736	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-216785	NM_001195138	100507096	Hs.722750	NM_001195138		GIMD1	-	GIMAP family P-loop NTPase domain containing 1	protein-coding
4737	chr6	11609012	11610606	+	0	NA	Intergenic	Intergenic	71349	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
3515	chr1	113862575	113864210	+	0	NA	Intergenic	Intergenic	-70083	NM_001142782	260425	Hs.486189	XM_005270736	ENSG00000081026	MAGI3	MAGI-3|RP4-730K3.1|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
4074	chr18	13541798	13542594	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	-68917	NR_039752	100616130		NR_039752		MIR4526	-	microRNA 4526	ncRNA
1724	chr1	149588008	149592870	+	0	NA	intron (NR_046138, intron 2 of 3)	intron (NR_046138, intron 2 of 3)	13986	NR_024510	728855	Hs.662922	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	ncRNA
1520	chr9	36053446	36055194	+	0	NA	intron (NM_021111, intron 2 of 20)	intron (NM_021111, intron 2 of 20)	17410	NM_021111	8434	Hs.388918	XM_005251613	ENSG00000122707	RECK	ST15	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding
3965	chr15	90326920	90329469	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8605	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
4056	chr17	68682818	68684640	+	0	NA	Intergenic	Intergenic	514591	NR_104152	101928165	Hs.407613	XR_243749	ENSG00000260785	CASC17	LINC00600|RP11-879D6.1	cancer susceptibility candidate 17 (non-protein coding)	ncRNA
303	chr11	122267106	122271030	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-195298	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
250	chr11	15076105	15077513	+	0	NA	Intergenic	MIR|SINE|MIR	-18337	NM_000728	797	Hs.534305	XM_005253135	ENSG00000175868	CALCB	CALC2|CGRP-II|CGRP2	calcitonin-related polypeptide beta	protein-coding
2148	chr14	68985292	68990561	+	0	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	272705	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
614	chr18	33014880	33017626	+	0	NA	Intergenic	L1MEf|LINE|L1	-58952	NM_145756	252884	Hs.351005	XM_005258236	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
1765	chr1	201234837	201239003	+	0	NA	Intergenic	Intergenic	-15660	NM_001005337	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)	protein-coding
2963	chr5	17373147	17380172	+	0	NA	Intergenic	L1PA7|LINE|L1	10760	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
2959	chr5	6899899	6901608	+	0	NA	Intergenic	Intergenic	-72719	NR_036242	100422999		NR_036242		MIR4278	-	microRNA 4278	ncRNA
130	chr1	213951799	213953510	+	0	NA	Intergenic	Intergenic	-145438	NR_046189	100861504	Hs.742586	NR_046189		LINC00538	PROX1UP|Yiya	long intergenic non-protein coding RNA 538	ncRNA
1373	chr6	153066466	153068232	+	0	NA	Intergenic	Intergenic	-4583	NM_194435	7432	Hs.53973	XM_005267135	ENSG00000146469	VIP	PHM27	vasoactive intestinal peptide	protein-coding
53	chr1	75549127	75550717	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-44197	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
2925	chr5	81395560	81397587	+	0	NA	intron (NM_031482, intron 3 of 7)	L3|LINE|CR1	128729	NM_001131028	83734	Hs.713698	XM_005248610	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
1302	chr6	43938465	43941251	+	0	NA	Intergenic	Intergenic	-28479	NM_001171992	221416	Hs.531926	NM_001171992	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
2239	chr16	65152709	65160736	+	0	NA	promoter-TSS (NM_001797)	promoter-TSS (NM_001797)	-803	NM_001797	1009	Hs.116471	XM_005255761		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
4966	chr9	100981982	100982815	+	0	NA	intron (NM_001267571, intron 6 of 12)	intron (NM_001267571, intron 6 of 12)	-6565	NM_001267572	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
4517	chr4	140967665	140968646	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	107078	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
3341	chr9	5229708	5233173	+	0	NA	promoter-TSS (NM_002195)	promoter-TSS (NM_002195)	21	NM_002195	3641	Hs.418506	NM_002195		INSL4	EPIL|PLACENTIN	insulin-like 4 (placenta)	protein-coding
3029	chr5	148850744	148852509	+	0	NA	Intergenic	Intergenic	41417	NR_029686	406937		NR_029686	ENSG00000269936	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
2392	chr2	63960728	63966290	+	0	NA	Intergenic	Intergenic	-104589	NM_001001521	7360	Hs.516217	XM_005264536	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
4255	chr2	218224748	218226982	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	395451	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
3587	chr1	209279017	209279921	+	0	NA	Intergenic	Intergenic	-322699	NM_001104548	642587	Hs.510543	XM_005273225		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
1879	chr10	69596726	69598660	+	0	NA	exon (NM_201262, exon 1 of 3)	exon (NM_201262, exon 1 of 3)	244	NM_201262	56521	Hs.260720	NM_021800	ENSG00000108176	DNAJC12	JDP1	DnaJ (Hsp40) homolog, subfamily C, member 12	protein-coding
3313	chr8	118858263	118861188	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	264333	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
1824	chr10	48264013	48268610	+	0	NA	intron (NM_001040084, intron 9 of 11)	intron (NM_001040084, intron 9 of 11)	11107	NM_001040084	653145	Hs.744068	XR_246202	ENSG00000165390	ANXA8	ANX8	annexin A8	protein-coding
4135	chr2	235731943	235733694	+	0	NA	Intergenic	Intergenic	-127810	NM_014521	23677	Hs.516777	XM_005246069	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
2917	chr4	169707919	169711970	+	0	NA	intron (NM_016081, intron 10 of 20)	L1MC1|LINE|L1	-43212	NM_001166110	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
2342	chr18	33105832	33107546	+	0	NA	Intergenic	AluSz6|SINE|Alu	-28734	NM_194281	125476	Hs.464903	XM_005258195	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
3516	chr1	117689977	117690907	+	0	NA	intron (NM_001253849, intron 4 of 5)	intron (NM_001253849, intron 4 of 5)	-26031	NM_025188	80263	Hs.301526	XR_246297	ENSG00000134253	TRIM45	RNF99	tripartite motif containing 45	protein-coding
832	chr20	11438776	11440863	+	0	NA	Intergenic	Intergenic	-185788	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
2135	chr14	36415481	36421012	+	0	NA	Intergenic	Intergenic	-121387	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	RP11-259K15.3	long intergenic non-protein coding RNA 609	ncRNA
3916	chr15	44449287	44450934	+	0	NA	intron (NM_001286490, intron 1 of 15)	intron (NM_001286490, intron 1 of 15)	36534	NM_001286490	84978	Hs.578544	XM_005254729	ENSG00000171877	FRMD5	-	FERM domain containing 5	protein-coding
828	chr20	8074745	8075920	+	0	NA	Intergenic	LTR85b|LTR|Gypsy?	-37580	NM_182734	23236	Hs.431173	XM_005260681	ENSG00000182621	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
276	chr11	92039951	92041650	+	0	NA	Intergenic	Intergenic	-44462	NM_001008781	120114	Hs.98523	XM_005273759	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
1831	chr10	73755786	73762439	+	0	NA	intron (NM_004273, intron 1 of 2)	intron (NM_004273, intron 1 of 2)	34992	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
2465	chr2	56088303	56091029	+	0	NA	Intergenic	MIRc|SINE|MIR	61632	NM_001039349	2202	Hs.732348	XM_005264204	ENSG00000115380	EFEMP1	DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5	EGF containing fibulin-like extracellular matrix protein 1	protein-coding
3949	chr15	73343385	73346072	+	0	NA	promoter-TSS (NM_001172624)	promoter-TSS (NM_001172624)	-97	NM_002499	4756	Hs.388613	XM_005254408	ENSG00000067141	NEO1	IGDCC2|NGN	neogenin 1	protein-coding
3523	chr1	149589435	149590568	+	0	NA	intron (NR_046138, intron 2 of 3)	intron (NR_046138, intron 2 of 3)	13548	NR_024510	728855	Hs.662922	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	ncRNA
4614	chr5	32687009	32687644	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-23417	NM_001204376	4883	Hs.619466	XM_005248309	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
3868	chr13	99802468	99804739	+	0	NA	Intergenic	Intergenic	-49076	NM_001144072	337867	Hs.508545	NM_001144072	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
1404	chr7	34108865	34110866	+	0	NA	intron (NM_133468, intron 12 of 15)	intron (NM_133468, intron 12 of 15)	165342	NM_133468	168667	Hs.660998	XM_005249632	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
1543	chr9	113112712	113114428	+	0	NA	Intergenic	Intergenic	-13406	NM_001286947	255220	Hs.147064	XM_005251879	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
424	chr13	43541457	43543105	+	0	NA	intron (NM_001002264, intron 3 of 12)	LTR78|LTR|ERV1	24126	NM_001002264	94240	Hs.546467	XM_005266596	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1 (breast)	protein-coding
4124	chr2	18480468	18481558	+	0	NA	Intergenic	Intergenic	260946	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
1402	chr7	32132329	32134035	+	0	NA	intron (NM_001191058, intron 3 of 18)	intron (NM_001191058, intron 3 of 18)	-22137	NM_005020	5137	Hs.728862	XM_005249766	ENSG00000154678	PDE1C	Hcam3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
4936	chr9	2806711	2808167	+	0	NA	intron (NM_014878, intron 17 of 17)	AluJr|SINE|Alu	36691	NM_014878	9933	Hs.493309	XM_005251635	ENSG00000080608	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
4985	chr9	123545234	123545942	+	0	NA	intron (NM_012164, intron 3 of 7)	intron (NM_012164, intron 3 of 7)	10152	NM_012164	26190	Hs.494985	XM_005251908	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
2402	chr2	28210193	28214508	+	0	NA	intron (NM_001261840, intron 4 of 11)	L2b|LINE|L2	-6884	NR_036230	100422965		NR_036230		MIR4263	-	microRNA 4263	ncRNA
2986	chr5	87956013	87957992	+	0	NA	intron (NR_015436, intron 3 of 4)	CpG	5755	NR_030741	407047		NR_030741	ENSG00000245526	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2	microRNA 9-2	ncRNA
1841	chr10	116079562	116081563	+	0	NA	intron (NM_001001936, intron 5 of 18)	intron (NM_001001936, intron 5 of 18)	81549	NM_001272046	340706	Hs.197741	NM_001272046		VWA2	AMACO|CCSP-2|NET42	von Willebrand factor A domain containing 2	protein-coding
347	chr12	20562402	20564838	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	41441	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
4865	chr7	92456473	92457298	+	0	NA	intron (NM_001259, intron 2 of 7)	intron (NM_001259, intron 2 of 7)	6346	NM_001259	1021	Hs.119882	XM_005250106	ENSG00000105810	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
3558	chr1	185553967	185556213	+	0	NA	Intergenic	LTR22C|LTR|ERVK	-148593	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
3294	chr8	40582468	40585191	+	0	NA	intron (NM_001135731, intron 3 of 5)	intron (NM_001135731, intron 3 of 5)	171514	NM_024645	79698	Hs.591850	XM_005273643	ENSG00000165061	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
4307	chr20	4895960	4898788	+	0	NA	intron (NM_203327, intron 3 of 16)	MER47A|DNA|TcMar-Tigger	84771	NM_005116	9962	Hs.516866	XM_005260901	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
434	chr13	80314653	80315913	+	0	NA	Intergenic	Intergenic	-259917	NR_046685	100874208	Hs.602801	NR_046685	ENSG00000232132	NDFIP2-AS1	RP11-394M3.2	NDFIP2 antisense RNA 1	ncRNA
2586	chr20	5815461	5817685	+	0	NA	intron (NM_152504, intron 2 of 2)	intron (NM_152504, intron 2 of 2)	-75401	NM_001819	1114	Hs.516874	NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B (secretogranin 1)	protein-coding
1184	chr5	111567055	111569882	+	0	NA	intron (NM_022140, intron 12 of 22)	intron (NM_022140, intron 12 of 22)	71286	NR_002922	654322	Hs.689709	NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
865	chr20	56221044	56225045	+	0	NA	TTS (NM_001255976)	TTS (NM_001255976)	-27412	NM_001160418	81030	Hs.302123	NM_001160417	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
3165	chr6	116332222	116340919	+	0	NA	intron (NM_002031, intron 1 of 7)	THE1C|LTR|ERVL-MaLR	-23324	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
4216	chr2	112416466	112418012	+	0	NA	Intergenic	MER21C|LTR|ERVL	-164547	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
4134	chr2	234601039	234604351	+	0	NA	intron (NM_001072, intron 1 of 4)	intron (NM_001072, intron 1 of 4)	1183	NM_001072	54578	Hs.554822	NM_001072	ENSG00000167165	UGT1A6	GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F	UDP glucuronosyltransferase 1 family, polypeptide A6	protein-coding
4654	chr5	118623035	118623963	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	19112	NM_001286815	25816	Hs.656274	XM_005271952		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
689	chr2	23214549	23215409	+	0	NA	Intergenic	Intergenic	-393319	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
3129	chr6	43880250	43883615	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	23167	NR_024478	100132354	Hs.376232	NR_024478		LOC100132354	-	uncharacterized LOC100132354	ncRNA
3929	chr15	44485536	44488191	+	0	NA	promoter-TSS (NM_001286490)	promoter-TSS (NM_001286490)	-219	NM_001286490	84978	Hs.578544	XM_005254729	ENSG00000171877	FRMD5	-	FERM domain containing 5	protein-coding
3462	chr1	213088033	213090560	+	0	NA	Intergenic	Intergenic	-34591	NM_001136474	79805	Hs.96885	XM_005273268	ENSG00000143494	VASH2	RP11-275G3.1	vasohibin 2	protein-coding
1116	chr4	173944885	173946382	+	0	NA	intron (NM_001034845, intron 12 of 12)	intron (NM_001034845, intron 12 of 12)	-144271	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
4413	chr3	16522667	16523661	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	32058	NM_015150	23180	Hs.98910	XM_005264985	ENSG00000131378	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
2869	chr4	41405070	41416634	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	48050	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
1725	chr1	151341962	151345923	+	0	NA	intron (NM_001258289, intron 1 of 11)	intron (NM_001258289, intron 1 of 11)	1268	NM_001258289	8991	Hs.632460	XM_005245576	ENSG00000143416	SELENBP1	HEL-S-134P|LPSB|SBP56|SP56|hSBP	selenium binding protein 1	protein-coding
4965	chr9	100980885	100981470	+	0	NA	intron (NM_001267571, intron 6 of 12)	intron (NM_001267571, intron 6 of 12)	-5344	NM_001267572	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
727	chr2	72436062	72438571	+	0	NA	intron (NM_015189, intron 20 of 21)	L2c|LINE|L2	-62325	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
2379	chr19	41426357	41428994	+	0	NA	Intergenic	Intergenic	-2495	NR_001278	1556	Hs.529117	NR_001278	ENSG00000256612	CYP2B7P	CYP2B|CYP2B7|CYP2B7P1	cytochrome P450, family 2, subfamily B, polypeptide 7, pseudogene	pseudo
4220	chr2	122039714	122043412	+	0	NA	intron (NM_014553, intron 1 of 14)	intron (NM_014553, intron 1 of 14)	1215	NM_014553	29842	Hs.156471	XM_005263651	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
939	chr3	36196277	36197783	+	0	NA	Intergenic	L1MCb|LINE|L1	-225067	NM_003149	6769	Hs.56045	XM_005265412	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
4600	chr5	145324854	145326738	+	0	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	9670	NM_152550	153769	Hs.443728	XM_005268380	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
2619	chr20	13223573	13225461	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	-4183	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	RP5-1077I2.4	ISM1 antisense RNA 1	ncRNA
4095	chr18	56216295	56217939	+	0	NA	intron (NM_052947, intron 4 of 12)	intron (NM_052947, intron 4 of 12)	79072	NM_052947	115701	Hs.628152	XM_005266646	ENSG00000198796	ALPK2	HAK	alpha-kinase 2	protein-coding
1670	chr1	855555	863005	+	0	NA	Intergenic	CpG	-1841	NM_152486	148398	Hs.335293	XM_005244723	ENSG00000187634	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
2010	chr12	92993495	93000258	+	0	NA	Intergenic	L2c|LINE|L2	-99743	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
4858	chr7	50801766	50802324	+	0	NA	intron (NM_001001555, intron 2 of 16)	intron (NM_001001555, intron 2 of 16)	-1995	NM_005311	2887	Hs.164060	XM_005271760	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
2834	chr4	40335288	40337606	+	0	NA	promoter-TSS (NM_017581)	promoter-TSS (NM_017581)	-899	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor, nicotinic, alpha 9 (neuronal)	protein-coding
3342	chr9	21811355	21815989	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	11037	NM_002451	4507	Hs.193268	XM_005251463	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
4237	chr2	161131822	161132804	+	0	NA	intron (NM_016836, intron 12 of 13)	intron (NM_016836, intron 12 of 13)	-3907	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
1537	chr9	101002608	101005408	+	0	NA	intron (NM_001267571, intron 3 of 12)	intron (NM_001267571, intron 3 of 12)	-12509	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA mir-6854	ncRNA
1127	chr5	123089541	123093826	+	0	NA	Intergenic	Intergenic	210572	NM_004384	1456	Hs.741716	XM_005271891	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
4415	chr3	23621206	23622825	+	0	NA	intron (NR_039621, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	-225369	NM_182666	7324	Hs.164853	XM_005265431	ENSG00000170142	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
894	chr22	28809352	28810913	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-45725	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA mir-5739	ncRNA
4850	chr7	30498619	30500702	+	0	NA	intron (NM_006092, intron 1 of 13)	intron (NM_006092, intron 1 of 13)	18733	NM_006092	10392	Hs.405153	XM_005249568	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide-binding oligomerization domain containing 1	protein-coding
1298	chr6	37684778	37687023	+	0	NA	Intergenic	MER99|DNA|hAT?	-20134	NM_153487	266727	Hs.437993	XM_005249003	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
3425	chrX	76307148	76309561	+	0	NA	Intergenic	Intergenic	-168569	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
140	chr1	245420686	245425276	+	0	NA	intron (NM_018012, intron 2 of 14)	AluJb|SINE|Alu	104694	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
2222	chr15	88294582	88297715	+	0	NA	Intergenic	Intergenic	175988	NR_026869	145978	Hs.350808	NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
1900	chr10	103696854	103700898	+	0	NA	intron (NM_024541, intron 23 of 25)	intron (NM_024541, intron 23 of 25)	-95199	NM_173193	30819	Hs.97044	XM_005269729	ENSG00000120049	KCNIP2	KCHIP2	Kv channel interacting protein 2	protein-coding
954	chr3	99369694	99371008	+	0	NA	intron (NM_020351, intron 1 of 3)	intron (NM_020351, intron 1 of 3)	12911	NM_001850	1295	Hs.740617	XM_005247098	ENSG00000144810	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
3460	chr1	207910272	207913018	+	0	NA	Intergenic	Intergenic	-13738	NM_002389	4179	Hs.510402	NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
4524	chr4	187857149	187859017	+	0	NA	Intergenic	Intergenic	-213096	NM_005245	2195	Hs.481371	XM_005262834	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
801	chr2	228077873	228081258	+	0	NA	intron (NM_000091, intron 1 of 51)	intron (NM_000091, intron 1 of 51)	50284	NM_000091	1285	Hs.570065	XM_005246275	ENSG00000169031	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
4950	chr9	72286653	72288523	+	0	NA	promoter-TSS (NM_001163)	promoter-TSS (NM_001163)	-313	NM_001163	320	Hs.592974	XM_005251967	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
985	chr3	159829225	159830952	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	91652	NR_104132	730109	Hs.99333	XM_001132464		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
754	chr2	103782413	103784389	+	0	NA	Intergenic	Intergenic	404911	NM_144632	130827	Hs.436203	XM_005263874	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
3151	chr6	89089131	89092183	+	0	NA	Intergenic	Intergenic	-214890	NM_001160258	1268	Hs.75110	XM_005248649	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
3061	chr6	76232355	76236372	+	0	NA	Intergenic	Intergenic	-30867	NM_015687	27145	Hs.696158	XM_005248713	ENSG00000118407	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
1563	chrX	39194471	39196773	+	0	NA	Intergenic	Intergenic	-9006	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	RP11-265P11.2	-	uncharacterized LOC286442	ncRNA
1003	chr4	55574013	55575593	+	0	NA	intron (NM_001093772, intron 6 of 20)	intron (NM_001093772, intron 6 of 20)	50708	NM_001093772	3815	Hs.479754	XM_005265740	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
4147	chr2	20265420	20266770	+	0	NA	Intergenic	Intergenic	-14306	NM_014713	9741	Hs.467807	XM_005262635	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
4355	chr20	56345348	56349544	+	0	NA	Intergenic	Intergenic	-60854	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
1800	chr1	231511601	231514969	+	0	NA	intron (NM_022051, intron 1 of 4)	L2a|LINE|L2	39603	NM_001261462	83932	Hs.554892	XM_005273284	ENSG00000010072	SPRTN	C1orf124|DDDL1880|DVC1|PRO4323|Spartan|dJ876B10.3	SprT-like N-terminal domain	protein-coding
4230	chr2	150989421	150992060	+	0	NA	Intergenic	Intergenic	353469	NM_005168	390	Hs.713765	NM_001254738	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
1717	chr1	117361914	117364233	+	0	NA	Intergenic	MIR|SINE|MIR	65987	NM_001767	914	Hs.523500	XM_005271319	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
4349	chr20	46412801	46415615	+	0	NA	intron (NM_198596, intron 1 of 20)	CpG	600	NM_018837	55959	Hs.162016	XM_005260458	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
2557	chr2	218222489	218228832	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	395656	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
698	chr2	31782553	31784624	+	0	NA	intron (NM_000348, intron 1 of 4)	MLT1C|LTR|ERVL-MaLR	22452	NM_000348	6716	Hs.458345	NM_000348		SRD5A2	-	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	protein-coding
1634	chr1	84736313	84739071	+	0	NA	Intergenic	MER67B|LTR|ERV1	-26357	NM_001010971	148418	Hs.591445	NM_001010971	ENSG00000203943	SAMD13	RP11-376N17.1	sterile alpha motif domain containing 13	protein-coding
524	chr15	96768426	96770223	+	0	NA	Intergenic	Intergenic	-99833	NM_001145155	7026	Hs.519445	NM_001145155	ENSG00000185551	NR2F2	ARP1|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
1848	chr10	12446203	12450560	+	0	NA	intron (NM_020397, intron 1 of 9)	intron (NM_020397, intron 1 of 9)	56798	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
2176	chr15	29813274	29815776	+	0	NA	intron (NM_015307, intron 1 of 10)	L1M6|LINE|L1	48402	NM_015307	23359	Hs.383564	XM_005254261	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
4882	chr7	111799954	111801679	+	0	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	45646	NM_014705	9732	Hs.654652	XM_005250724	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
2714	chr3	111450502	111460389	+	0	NA	intron (NM_001134437, intron 1 of 17)	Charlie19a|DNA|hAT-Charlie	4118	NM_001134437	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
4380	chr22	18155833	18156590	+	0	NA	intron (NR_073068, intron 2 of 4)	AluY|SINE|Alu	17783	NR_073068	23786	Hs.631672	XM_005261231	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
4706	chr6	29719757	29721321	+	0	NA	Intergenic	CpG	-1614	NR_001590	340198	Hs.450189	NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
3418	chrX	43719511	43722180	+	0	NA	intron (NM_000898, intron 1 of 14)	L4|LINE|RTE	20876	NM_000898	4129	Hs.654473	XM_005272606	ENSG00000069535	MAOB	-	monoamine oxidase B	protein-coding
598	chr18	46071288	46075930	+	0	NA	intron (NM_001142397, intron 2 of 12)	intron (NM_001142397, intron 2 of 12)	8182	NM_001142397	9811	Hs.145230	XM_005258392	ENSG00000134030	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
2486	chr2	73315306	73317730	+	0	NA	intron (NM_015470, intron 1 of 4)	intron (NM_015470, intron 1 of 4)	-17553	NM_144579	94097	Hs.368171	XM_005264646	ENSG00000144040	SFXN5	BBG-TCC	sideroflexin 5	protein-coding
780	chr2	208121912	208124784	+	0	NA	Intergenic	Intergenic	-4308	NR_110283	101927865	Hs.622883	XR_241391	ENSG00000234902	AC007879.2	AC007879.5	uncharacterized LOC101927865	ncRNA
2317	chr17	77960056	77969989	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-40366	NM_001271846	125058	Hs.369819	XM_005257049	ENSG00000167291	TBC1D16	-	TBC1 domain family, member 16	protein-coding
3277	chr7	120496707	120499136	+	0	NA	5' UTR (NM_012338, exon 1 of 8)	5' UTR (NM_012338, exon 1 of 8)	256	NM_012338	23554	Hs.16529	XM_005250239	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
3547	chr1	172223674	172224998	+	0	NA	intron (NM_015569, intron 15 of 20)	intron (NM_015569, intron 15 of 20)	-110361	NR_103486	100628315	Hs.584880	XR_241057		DNM3OS	DNM3-AS1|MIR199A2HG|RP5-1116C7.1	DNM3 opposite strand/antisense RNA	ncRNA
3490	chr1	41443082	41443801	+	0	NA	Intergenic	AluJo|SINE|Alu	-1566	NM_001905	1503	Hs.473087	XM_005270535	ENSG00000171793	CTPS1	CTPS	CTP synthase 1	protein-coding
1433	chr7	129545342	129547489	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	46368	NM_001202498	7328	Hs.643548	NM_001202498	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
240	chr11	122272541	122274395	+	0	NA	Intergenic	Intergenic	-199698	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
1666	chr1	233748654	233752193	+	0	NA	intron (NM_002245, intron 1 of 2)	intron (NM_002245, intron 1 of 2)	673	NM_002245	3775	Hs.208544	NM_002245	ENSG00000135750	KCNK1	DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1	potassium channel, subfamily K, member 1	protein-coding
2209	chr15	68723045	68725341	+	0	NA	intron (NM_001004439, intron 1 of 29)	CpG	299	NM_001004439	22801	Hs.458733	XM_005254227	ENSG00000137809	ITGA11	HsT18964|RP11-709B3.2	integrin, alpha 11	protein-coding
230	chr11	30129165	30130292	+	0	NA	Intergenic	Intergenic	-91151	NM_002233	3739	Hs.592002	NM_002233	ENSG00000182255	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
115	chr1	192942855	192945109	+	0	NA	Intergenic	Intergenic	84541	NM_001199261	51377	Hs.145469	XM_005245244	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin carboxyl-terminal hydrolase L5	protein-coding
2374	chr19	19513407	19515210	+	0	NA	intron (NM_017660, intron 1 of 11)	intron (NM_017660, intron 1 of 11)	17666	NM_017660	54815	Hs.118964	XM_005259954	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
922	chr3	15328466	15330407	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	33745	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	AC087590.3	SH3BP5 antisense RNA 1	ncRNA
2319	chr18	33089874	33096365	+	0	NA	Intergenic	Intergenic	-15164	NM_194281	125476	Hs.464903	XM_005258195	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
2628	chr20	22469072	22473816	+	0	NA	Intergenic	Intergenic	-70163	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	RP5-1004I9.1	-	uncharacterized LOC284788	ncRNA
2741	chr3	37143715	37146046	+	0	NA	intron (NM_006309, intron 14 of 27)	intron (NM_006309, intron 14 of 27)	71216	NM_006309	9209	Hs.740522	XM_005265538	ENSG00000093167	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
3740	chr11	76783193	76785415	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	6312	NM_004055	726	Hs.248153	XM_005274206	ENSG00000149260	CAPN5	HTRA3|nCL-3	calpain 5	protein-coding
1072	chr4	57939563	57943153	+	0	NA	intron (NM_001553, intron 1 of 4)	intron (NM_001553, intron 1 of 4)	-34570	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	RP11-12A1.1	IGFBP7 antisense RNA 1	ncRNA
2470	chr2	63924726	63927507	+	0	NA	Intergenic	Intergenic	109831	NM_001199112	4190	Hs.526521	XM_005264320	ENSG00000014641	MDH1	HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1, NAD (soluble)	protein-coding
1394	chr7	26976963	26978582	+	0	NA	Intergenic	Intergenic	-73431	NM_003930	8935	Hs.610137	XM_005249901	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
2772	chr3	99356052	99357817	+	0	NA	promoter-TSS (NM_001850)	promoter-TSS (NM_001850)	-506	NM_020351	1295	Hs.740617	XM_005247098	ENSG00000144810	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
4878	chr7	108095153	108097360	+	0	NA	intron (NM_001193582, intron 1 of 30)	CpG	585	NM_001193584	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
1277	chr6	16575522	16577944	+	0	NA	intron (NM_000332, intron 5 of 8)	intron (NM_000332, intron 5 of 8)	184988	NM_001128164	6310	Hs.434961	XM_005249287	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
2251	chr16	56724407	56727338	+	0	NA	Intergenic	Intergenic	9490	NM_005952	4501	Hs.374950	NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
3456	chr1	180566809	180569672	+	0	NA	Intergenic	Intergenic	-32906	NM_001135669	9213	Hs.227656	NM_001135669	ENSG00000143324	XPR1	SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
1086	chr4	89531322	89534934	+	0	NA	intron (NM_014606, intron 3 of 25)	intron (NM_014606, intron 3 of 25)	19554	NM_014606	8916	Hs.35804	XM_005263327	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
564	chr17	8322948	8324593	+	0	NA	Intergenic	Intergenic	-15400	NM_001025579	81565	Hs.740680	XM_005256805	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1-like 1	protein-coding
4488	chr3	138108477	138109769	+	0	NA	intron (NM_001252090, intron 2 of 5)	intron (NM_001252090, intron 2 of 5)	41153	NM_001252090	22808	Hs.735125	XM_005247228	ENSG00000158186	MRAS	M-RAs|R-RAS3|RRAS3	muscle RAS oncogene homolog	protein-coding
3070	chr6	125515793	125525890	+	0	NA	intron (NM_001003395, intron 1 of 6)	AluSq2|SINE|Alu	45421	NM_001003395	7164	Hs.591347	XM_005267120	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
2562	chr2	228091680	228094556	+	0	NA	intron (NR_102371, intron 11 of 13)	intron (NR_102371, intron 11 of 13)	63837	NM_000091	1285	Hs.570065	XM_005246275	ENSG00000169031	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
3951	chr15	74274329	74276064	+	0	NA	TTS (NM_004809)	TTS (NM_004809)	9493	NM_001256675	9399	Hs.194816	XM_005254790	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
3094	chr6	7730169	7732069	+	0	NA	intron (NM_001718, intron 1 of 6)	intron (NM_001718, intron 1 of 6)	4108	NM_001718	654	Hs.285671	XM_005249305	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
1967	chr11	111709849	111713578	+	0	NA	intron (NM_001077690, intron 10 of 15)	intron (NM_001077690, intron 10 of 15)	30291	NM_001077691	79796	Hs.745155	XM_005277723		ALG9	CDG1L|DIBD1|LOH11CR1J	ALG9, alpha-1,2-mannosyltransferase	protein-coding
2850	chr4	158940560	158942974	+	0	NA	Intergenic	Intergenic	151951	NM_016613	51313	Hs.567498	XM_005263054	ENSG00000164125	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
657	chr2	64076097	64078184	+	0	NA	intron (NM_006759, intron 1 of 9)	intron (NM_006759, intron 1 of 9)	8126	NM_006759	7360	Hs.516217	XM_005264536	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
1865	chr10	30099084	30102686	+	0	NA	Intergenic	Intergenic	-76155	NM_003174	6840	Hs.499209	XM_005252564	ENSG00000197321	SVIL	-	supervillin	protein-coding
1783	chr1	210423557	210425660	+	0	NA	Intergenic	Intergenic	-17142	NR_024337	574036	Hs.446946	NR_024337	ENSG00000203706	SERTAD4-AS1	C1orf133	SERTAD4 antisense RNA 1	ncRNA
4642	chr5	95136723	95137627	+	0	NA	Intergenic	Intergenic	21402	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
503	chr15	38880032	38882705	+	0	NA	Intergenic	Intergenic	-24361	NM_001128602	10125	Hs.591127	XM_005254113	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
4181	chr2	62752190	62753886	+	0	NA	Intergenic	Intergenic	-19434	NM_198276	200728	Hs.308028	XM_005264199	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
4126	chr2	62520481	62521606	+	0	NA	Intergenic	Intergenic	88082	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
1483	chr8	118877909	118879798	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	245205	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
4069	chr18	10799075	10799670	+	0	NA	intron (NM_022068, intron 11 of 51)	MER102b|DNA|hAT-Charlie	273499	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	N-ethylmaleimide-sensitive factor attachment protein, gamma	protein-coding
3800	chr12	53931489	53933007	+	0	NA	intron (NM_001130060, intron 4 of 11)	intron (NM_001130060, intron 4 of 11)	24480	NR_046221	100652999	Hs.633602	NR_046221	ENSG00000257550	RP11-793H13.3	-	uncharacterized LOC100652999	ncRNA
1996	chr12	20363534	20368127	+	0	NA	Intergenic	Intergenic	-156349	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
4695	chr5	172383723	172384641	+	0	NA	non-coding (NR_026682, exon 3 of 4)	non-coding (NR_026682, exon 3 of 4)	1596	NR_026683	100268168	Hs.519766	XR_245267	ENSG00000204758	LOC100268168	-	uncharacterized LOC100268168	ncRNA
4584	chr4	169552009	169554401	+	0	NA	intron (NM_001166109, intron 1 of 18)	intron (NM_001166109, intron 1 of 18)	437	NM_001166109	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
1036	chr4	23632449	23634404	+	0	NA	Intergenic	Intergenic	-168700	NR_039674	100616252		NR_039674	ENSG00000221466	MIR548AJ2	-	microRNA 548aj-2	ncRNA
3492	chr1	42327055	42329283	+	0	NA	intron (NR_038260, intron 1 of 2)	polypyrimidine|Low_complexity|Low_complexity	56209	NM_024503	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
1265	chr6	8556233	8557643	+	0	NA	intron (NR_038979, intron 2 of 3)	intron (NR_038979, intron 2 of 3)	-95504	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
2065	chr12	74782501	74790062	+	0	NA	Intergenic	Intergenic	-99870	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
4150	chr2	27243972	27245421	+	0	NA	intron (NM_012326, intron 1 of 6)	L2b|LINE|L2	-11078	NM_001083590	54867	Hs.533934	XM_005264381	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
544	chr16	50267593	50270653	+	0	NA	TTS (NM_001040284)	TTS (NM_001040284)	-31328	NM_001286057	113	Hs.513578	XM_005255779	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
4696	chr5	173140786	173142440	+	0	NA	intron (NR_108027, intron 1 of 2)	intron (NR_108027, intron 1 of 2)	31599	NR_108027	101928136	Hs.638681	XR_245298		LOC101928136	-	uncharacterized LOC101928136	ncRNA
4370	chr21	39682995	39686123	+	0	NA	Intergenic	Intergenic	40217	NM_170737	3772	Hs.411299	XM_005260975	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
4527	chr4	6748507	6749885	+	0	NA	Intergenic	Intergenic	31354	NM_018366	55330	Hs.7570	NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding
3253	chr7	84153693	84155760	+	0	NA	Intergenic	Intergenic	-7066	NR_110080	101927378	Hs.539042	XR_242309	ENSG00000235139	AC003984.1	-	uncharacterized LOC101927378	ncRNA
4634	chr5	82746329	82747211	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-20723	NM_001164097	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
1196	chr5	124393774	124395788	+	0	NA	intron (NR_109882, intron 2 of 5)	intron (NR_109882, intron 2 of 5)	22257	NR_109882	101927421	Hs.638668	XR_246576		RP11-257I8.2	-	uncharacterized LOC101927421	ncRNA
1114	chr4	169615114	169616813	+	0	NA	intron (NM_016081, intron 8 of 20)	intron (NM_016081, intron 8 of 20)	63195	NM_001166109	23022	Hs.151220	XM_005262861	ENSG00000129116	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
2389	chr19	46634826	46638487	+	0	NA	Intergenic	LTR10C|LTR|ERV1	-8725	NM_207393	388555	Hs.365496	NM_207393	ENSG00000188624	IGFL3	UNQ483	IGF-like family member 3	protein-coding
4497	chr3	156251113	156254175	+	0	NA	intron (NM_003471, intron 13 of 13)	intron (NM_003471, intron 13 of 13)	20329	NM_007107	6747	Hs.518346	XM_005247729	ENSG00000114850	SSR3	TRAPG	signal sequence receptor, gamma (translocon-associated protein gamma)	protein-coding
3657	chr10	29393256	29395586	+	0	NA	Intergenic	L2a|LINE|L2	-183569	NM_032517	84569	Hs.558572	XM_005252627	ENSG00000120563	LYZL1	KAAG648|LYC2|PRO1278|bA534G20.1	lysozyme-like 1	protein-coding
239	chr11	115357135	115362552	+	0	NA	intron (NM_014333, intron 1 of 9)	intron (NM_014333, intron 1 of 9)	15398	NM_014333	23705	Hs.370510	XM_005271491	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
122	chr1	201577302	201579437	+	0	NA	Intergenic	Intergenic	-39081	NM_020443	89796	Hs.585374	XM_005245572	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
2635	chr20	31066071	31074422	+	0	NA	intron (NM_001256798, intron 4 of 10)	CpG	1139	NM_080616	140688	Hs.729596	XM_005260282	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
878	chr21	40219044	40220731	+	0	NA	Intergenic	Charlie18a|DNA|hAT-Charlie	-9576	NR_109926	101928398	Hs.122403	XR_244310		LOC101928398	-	uncharacterized LOC101928398	ncRNA
269	chr11	61716410	61718249	+	0	NA	promoter-TSS (NM_004183)	promoter-TSS (NM_004183)	-27	NM_004183	7439	Hs.712676	XM_005274210	ENSG00000167995	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
363	chr12	69788291	69790416	+	0	NA	Intergenic	Intergenic	35821	NM_006530	8089	Hs.4029	XM_005269163	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
2277	chr17	62158546	62162688	+	0	NA	intron (NM_001433, intron 2 of 21)	L1MC5|LINE|L1	46885	NM_001433	2081	Hs.744953	XM_005257141	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
4264	chr2	234465119	234467097	+	0	NA	intron (NM_018218, intron 3 of 30)	MamRep434|DNA|TcMar-Tigger	8128	NM_018218	55230	Hs.96513	XM_005246088	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
4573	chr4	141023556	141025528	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	50691	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
2353	chr18	47720421	47722061	+	0	NA	5' UTR (NM_001080467, exon 1 of 40)	5' UTR (NM_001080467, exon 1 of 40)	210	NM_001080467	4645	Hs.720076	XM_005258276	ENSG00000167306	MYO5B	-	myosin VB	protein-coding
4140	chr2	9675837	9677208	+	0	NA	intron (NM_003183, intron 3 of 18)	intron (NM_003183, intron 3 of 18)	19395	NM_003183	6868	Hs.404914	NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|TACE	ADAM metallopeptidase domain 17	protein-coding
3198	chr6	166794484	166798128	+	0	NA	non-coding (NR_073093, exon 1 of 5)	non-coding (NR_073093, exon 1 of 5)	195	NR_073093	51660	Hs.172755	NM_001270879	ENSG00000060762	MPC1	BRP44L|MPYCD|dJ68L15.3	mitochondrial pyruvate carrier 1	protein-coding
3215	chr7	129597427	129600364	+	0	NA	Intergenic	Intergenic	-6095	NM_003344	7328	Hs.643548	NM_001202498	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
2159	chr14	96625098	96627847	+	0	NA	Intergenic	Intergenic	-44663	NM_000623	624	Hs.726620	XM_005267979	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
3059	chr6	56505946	56508716	+	0	NA	intron (NM_183380, intron 11 of 93)	intron (NM_183380, intron 11 of 93)	363	NM_015548	667	Hs.735651	XM_005249310	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
4876	chr7	107875628	107876669	+	0	NA	intron (NM_005010, intron 4 of 27)	MER20|DNA|hAT-Charlie	4466	NM_001037132	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
4834	chr7	1016794	1018009	+	0	NA	Intergenic	Intergenic	-2166	NM_001031617	90639	Hs.121593	NM_001031617		COX19	-	cytochrome c oxidase assembly homolog 19 (S. cerevisiae)	protein-coding
4725	chr6	3825810	3827111	+	0	NA	Intergenic	Intergenic	-23172	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
1449	chr7	151619781	151621524	+	0	NA	Intergenic	Intergenic	-32812	NM_145292	168391	Hs.647077	NM_145292	ENSG00000106648	GALNTL5	GALNACT19|GALNT15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding
4538	chr4	41365069	41365783	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	2624	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2873	chr4	71535606	71537983	+	0	NA	Intergenic	MIR|SINE|MIR	-4446	NM_144646	3512	Hs.643431	NM_144646	ENSG00000132465	IGJ	IGCJ|JCH	immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides	protein-coding
4062	chr17	76857454	76859345	+	0	NA	intron (NM_003255, intron 3 of 4)	intron (NM_003255, intron 3 of 4)	-21430	NM_025090	57602	Hs.464243	XM_005257542	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
1314	chr6	79307549	79309586	+	0	NA	Intergenic	Intergenic	-268694	NM_001010844	134728	Hs.656212	XM_005248654	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
3591	chr1	210405682	210407519	+	0	NA	intron (NM_019605, intron 1 of 3)	CpG	405	NM_019605	56256	Hs.600545	XM_005273193		SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
2748	chr3	50300249	50309340	+	0	NA	promoter-TSS (NM_004636)	promoter-TSS (NM_004636)	-246	NM_001005914	7869	Hs.82222	XM_005277528		SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding
1798	chr1	228131981	228137420	+	0	NA	intron (NM_003395, intron 1 of 3)	CpG	976	NM_003395	7483	Hs.149504	NM_003395		WNT9A	WNT14	wingless-type MMTV integration site family, member 9A	protein-coding
2535	chr2	174846785	174848888	+	0	NA	Intergenic	Intergenic	-17406	NM_003111	6670	Hs.531587	XM_005246801	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
522	chr15	84020254	84022030	+	0	NA	Intergenic	Intergenic	-67674	NM_001717	646	Hs.459153	XM_005272447	ENSG00000169594	BNC1	BNC|BSN1|HsT19447	basonuclin 1	protein-coding
1632	chr1	68205744	68208432	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	56228	NM_001924	1647	Hs.80409	NM_001199741	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
1423	chr7	106208815	106210117	+	0	NA	Intergenic	Intergenic	92168	NM_175884	168455	Hs.633903	XM_005250177	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
2412	chr2	96922865	96928893	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	5872	NM_017849	55654	Hs.735706	NM_001193304		TMEM127	-	transmembrane protein 127	protein-coding
3352	chr9	38379572	38383742	+	0	NA	Intergenic	MamRep38|DNA|hAT	-11004	NM_000692	219	Hs.743532	XM_005251406	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family, member B1	protein-coding
667	chr2	218806948	218808946	+	0	NA	intron (NM_022648, intron 1 of 32)	intron (NM_022648, intron 1 of 32)	849	NM_022648	7145	Hs.471381	XM_005246821	ENSG00000079308	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|TNS	tensin 1	protein-coding
1280	chr6	21767977	21771028	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	102827	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
313	chr12	19889976	19893148	+	0	NA	Intergenic	AluY|SINE|Alu	-276057	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
2017	chr12	130563164	130565611	+	0	NA	Intergenic	Intergenic	-37500	NR_024457	100190940	Hs.625993	XR_242944	ENSG00000214039	RP11-474D1.3	-	uncharacterized LOC100190940	ncRNA
4322	chr20	14199932	14202425	+	0	NA	intron (NM_080676, intron 3 of 16)	L1PB1|LINE|L1	117135	NM_198391	23767	Hs.41296	XM_005260682	ENSG00000125848	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
4031	chr17	19843281	19845411	+	0	NA	intron (NM_007202, intron 6 of 14)	intron (NM_007202, intron 6 of 14)	36823	NM_007202	11216	Hs.642676	XR_243536	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding
3023	chr5	140380105	140385772	+	0	NA	intron (NM_018904, intron 3 of 3)	AluSz|SINE|Alu	36586	NM_031883	56134	Hs.199343	NM_018899	ENSG00000243232	PCDHAC2	PCDH-ALPHA-C2	protocadherin alpha subfamily C, 2	protein-coding
2661	chr21	30546904	30552264	+	0	NA	Intergenic	Intergenic	-16231	NR_027072	193629	Hs.720711	NR_027072	ENSG00000215533	LINC00189	C21orf109|NCRNA00189	long intergenic non-protein coding RNA 189	ncRNA
2884	chr4	88159962	88162242	+	0	NA	Intergenic	Intergenic	-19428	NM_020803	57563	Hs.106601	XM_005263151	ENSG00000145332	KLHL8	-	kelch-like family member 8	protein-coding
3841	chr12	122580598	122584925	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	66109	NM_014938	22877	Hs.731847	NM_014938		MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
1324	chr6	85772280	85774549	+	0	NA	Intergenic	Intergenic	-299460	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
3077	chr6	166369606	166384031	+	0	NA	intron (NR_026860, intron 1 of 1)	MIRc|SINE|MIR	-24221	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
3305	chr8	68656387	68659547	+	0	NA	intron (NM_020361, intron 1 of 10)	intron (NM_020361, intron 1 of 10)	653	NM_020361	57094	Hs.658850	NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
3433	chrX	115369812	115372532	+	0	NA	Intergenic	Intergenic	69214	NM_000686	186	Hs.405348	XM_005268342	ENSG00000180772	AGTR2	AT2|ATGR2|MRX88	angiotensin II receptor, type 2	protein-coding
5021	chrX	151071017	151072439	+	0	NA	Intergenic	Intergenic	-9633	NM_001011548	4103	Hs.37107	XM_005274677	ENSG00000147381	MAGEA4	CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B	melanoma antigen family A, 4	protein-coding
4202	chr2	85033901	85035146	+	0	NA	intron (NM_001370, intron 71 of 76)	LTR81B|LTR|Gypsy	73846	NM_001080824	129293	Hs.469134	XM_005264129	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
459	chr14	57711322	57714578	+	0	NA	intron (NM_006544, intron 3 of 17)	intron (NM_006544, intron 3 of 17)	-22656	NM_018229	55745	Hs.597349	NM_018229	ENSG00000053770	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor-related protein complex 5, mu 1 subunit	protein-coding
3477	chr1	20810013	20813693	+	0	NA	exon (NM_018584, exon 1 of 2)	exon (NM_018584, exon 1 of 2)	875	NM_018584	55450	Hs.731383	NM_018584	ENSG00000162545	CAMK2N1	PRO1489|RP11-401M16.1	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding
4267	chr2	234598291	234600617	+	0	NA	promoter-TSS (NM_205862)	promoter-TSS (NM_205862)	-867	NM_205862	54578	Hs.554822	NM_001072	ENSG00000167165	UGT1A6	GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F	UDP glucuronosyltransferase 1 family, polypeptide A6	protein-coding
3715	chr11	11834361	11835468	+	0	NA	Intergenic	Intergenic	-28056	NM_001282659	55031	Hs.577256	XM_005252997	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
1495	chr9	27423796	27430120	+	0	NA	intron (NM_024761, intron 2 of 3)	intron (NM_024761, intron 2 of 3)	-97354	NM_020124	56832	Hs.591083	NM_020124	ENSG00000147896	IFNK	IFNT1|INFE1|RP11-27J8.1	interferon, kappa	protein-coding
1753	chr1	183773396	183776247	+	0	NA	intron (NM_015149, intron 2 of 18)	intron (NM_015149, intron 2 of 18)	-152373	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
3187	chr6	151134304	151136455	+	0	NA	intron (NM_001029884, intron 11 of 16)	intron (NM_001029884, intron 11 of 16)	-51436	NM_001242769	25902	Hs.591343	XM_005266907	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
2688	chr22	19257592	19264883	+	0	NA	intron (NM_007098, intron 2 of 32)	MER90a|LTR|ERV1	18002	NM_007098	8218	Hs.368266	XM_005261278	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin, heavy chain-like 1	protein-coding
4367	chr21	36143618	36144506	+	0	NA	intron (NR_038885, intron 1 of 2)	Tigger7|DNA|TcMar-Tigger	25940	NR_038885	100506385	Hs.120179	NR_038885	ENSG00000234380	AP000330.8	-	uncharacterized LOC100506385	ncRNA
1938	chr11	15215632	15218848	+	0	NA	intron (NM_001278316, intron 5 of 10)	intron (NM_001278316, intron 5 of 10)	46592	NM_001278313	387755	Hs.591997	XM_005252911	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
1919	chr11	8252034	8257944	+	0	NA	intron (NM_001270428, intron 1 of 3)	MIRc|SINE|MIR	30436	NR_073006	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
2756	chr3	64424328	64429426	+	0	NA	Intergenic	Intergenic	-120145	NR_110151	101929335	Hs.476604	XR_245235		RP11-14D22.5	-	uncharacterized LOC101929335	ncRNA
4244	chr2	183236895	183238339	+	0	NA	intron (NM_001003683, intron 2 of 14)	intron (NM_001003683, intron 2 of 14)	54158	NM_001258313	5136	Hs.742174	XM_005246635	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
3107	chr6	18386906	18389991	+	0	NA	intron (NM_182757, intron 1 of 7)	intron (NM_182757, intron 1 of 7)	867	NM_182757	255488	Hs.148741	XM_005248984	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
3441	chrY	27425198	27428106	+	0	NA	Intergenic	Intergenic	-95732	NR_002180	474151	Hs.741142	NR_002180	ENSG00000227439	TTTY17B	NCRNA00141	testis-specific transcript, Y-linked 17B (non-protein coding)	ncRNA
404	chr13	38190711	38192197	+	0	NA	Intergenic	Intergenic	-18473	NM_001135935	10631	Hs.721018	XM_005266230	ENSG00000133110	POSTN	OSF-2|OSF2|PDLPOSTN|PN|periostin	periostin, osteoblast specific factor	protein-coding
516	chr15	68787829	68791899	+	0	NA	Intergenic	Intergenic	-65372	NM_001004439	22801	Hs.458733	XM_005254227	ENSG00000137809	ITGA11	HsT18964|RP11-709B3.2	integrin, alpha 11	protein-coding
2004	chr12	54050212	54055588	+	0	NA	Intergenic	Intergenic	17209	NM_005176	517	Hs.524464	NM_001002031	ENSG00000135390	ATP5G2	ATP5A	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)	protein-coding
1813	chr10	28965495	28970862	+	0	NA	intron (NM_012342, intron 1 of 2)	intron (NM_012342, intron 1 of 2)	1754	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor	protein-coding
4754	chr6	24658254	24661398	+	0	NA	intron (NM_016614, intron 2 of 6)	intron (NM_016614, intron 2 of 6)	7289	NM_016614	51567	Hs.403010	NM_016614	ENSG00000111802	TDP2	AD022|EAP2|EAPII|TTRAP|dJ30M3.3|hTDP2	tyrosyl-DNA phosphodiesterase 2	protein-coding
3861	chr13	49356596	49357584	+	0	NA	Intergenic	L1PBb|LINE|L1	76139	NM_020377	57105	Hs.614318	XM_005266475	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
702	chr2	33201317	33203196	+	0	NA	intron (NM_206943, intron 2 of 33)	L1PA15|LINE|L1	29887	NM_206943	4052	Hs.619315	XM_005264315	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
4383	chr22	23623304	23625169	+	0	NA	intron (NM_004327, intron 8 of 22)	intron (NM_004327, intron 8 of 22)	19282	NR_033408	26226	Hs.729589	NR_033408		FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
2297	chr17	37905606	37908881	+	0	NA	Intergenic	MIRb|SINE|MIR	11023	NM_001242443	2886	Hs.86859	NM_001030002	ENSG00000141738	GRB7	-	growth factor receptor-bound protein 7	protein-coding
2163	chr15	63304924	63309090	+	0	NA	Intergenic	L2|LINE|L2	-27831	NM_001018006	7168	Hs.602995	XM_005254636	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
2214	chr15	74273852	74277149	+	0	NA	TTS (NM_004809)	TTS (NM_004809)	9189	NM_001256675	9399	Hs.194816	XM_005254790	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
357	chr12	55285223	55286641	+	0	NA	Intergenic	Intergenic	37633	NM_058173	118430	Hs.348419	NM_058173	ENSG00000172551	MUCL1	SBEM	mucin-like 1	protein-coding
4679	chr5	143576827	143579097	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	27525	NM_020768	57528	Hs.661870	XM_005268492		KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
3236	chr7	31921318	31924805	+	0	NA	intron (NM_001191058, intron 3 of 18)	Charlie7|DNA|hAT-Charlie	187405	NM_001191057	5137	Hs.728862	XM_005249766	ENSG00000154678	PDE1C	Hcam3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
1941	chr11	20015328	20018620	+	0	NA	intron (NM_001244963, intron 12 of 39)	intron (NM_001244963, intron 12 of 39)	-27128	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
4008	chr16	80057009	80058994	+	0	NA	Intergenic	Intergenic	228855	NR_104661	101928248	Hs.659802	XR_243479		LOC101928248	-	uncharacterized LOC101928248	ncRNA
2826	chr3	197092725	197094680	+	0	NA	Intergenic	Intergenic	-68255	NM_001098424	1739	Hs.292549	XM_005269289	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
455	chr14	32936974	32940050	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	140033	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
4895	chr7	141362141	141363809	+	0	NA	intron (NM_001080392, intron 8 of 8)	intron (NM_001080392, intron 8 of 8)	38978	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
4472	chr3	112348138	112349067	+	0	NA	intron (NM_199512, intron 3 of 7)	intron (NM_199512, intron 3 of 7)	11388	NM_199512	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
2132	chr14	32977947	32979599	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	180294	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
3181	chr6	147232841	147238174	+	0	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-110547	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
2612	chr20	8111833	8113991	+	0	NA	promoter-TSS (NM_015192)	promoter-TSS (NM_015192)	0	NM_182734	23236	Hs.431173	XM_005260681	ENSG00000182621	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
3751	chr11	122309902	122312521	+	0	NA	Intergenic	Intergenic	-215187	NM_032873	84959	Hs.444075	XM_005271712	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
1889	chr10	86038975	86040744	+	0	NA	intron (NR_038220, intron 1 of 5)	L1PA2|LINE|L1	123	NR_038220	170425	Hs.434131	NR_038220	ENSG00000229404	LINC00858	RP11-124L5.7	long intergenic non-protein coding RNA 858	ncRNA
2272	chr17	28670387	28673834	+	0	NA	Intergenic	Intergenic	-11045	NM_206832	388364	Hs.371005	XM_005257969	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
2692	chr22	26866297	26868686	+	0	NA	intron (NR_073136, intron 4 of 12)	intron (NR_073136, intron 4 of 12)	8156	NR_073136	89781	Hs.474436	NM_022081	ENSG00000100099	HPS4	LE	Hermansky-Pudlak syndrome 4	protein-coding
2646	chr20	46913554	46917109	+	0	NA	Intergenic	MIRc|SINE|MIR	-73323	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	RP1-66N13.3	long intergenic non-protein coding RNA 494	ncRNA
10	chr1	159940007	159941998	+	0	NA	intron (NR_038849, intron 1 of 2)	MER77B|LTR|ERVL	9988	NR_038849	100505633	Hs.445045	NR_038849	ENSG00000224259	LINC01133	RP11-48O20.4	long intergenic non-protein coding RNA 1133	ncRNA
4762	chr6	30855352	30856772	+	0	NA	promoter-TSS (NM_013994)	promoter-TSS (NM_013994)	-403	NM_001202522	780	Hs.631988	XM_005249385	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
550	chr16	65446503	65451018	+	0	NA	intron (NR_027755, intron 2 of 8)	intron (NR_027755, intron 2 of 8)	161443	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
2083	chr12	125608326	125610946	+	0	NA	intron (NM_023928, intron 12 of 17)	intron (NM_023928, intron 12 of 17)	59711	NM_023928	65985	Hs.656073	XM_005253609	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
1081	chr4	77531594	77533768	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	37960	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
4769	chr6	40925034	40926991	+	0	NA	Intergenic	Intergenic	80926	NM_173561	222643	Hs.158357	NM_173561	ENSG00000124602	UNC5CL	MUXA|ZUD	unc-5 homolog C (C. elegans)-like	protein-coding
1736	chr1	167516788	167520812	+	0	NA	intron (NM_003851, intron 1 of 3)	AluSg|SINE|Alu	4256	NM_003851	8804	Hs.5710	NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A-stimulated genes 1	protein-coding
958	chr3	102770381	102772540	+	0	NA	Intergenic	PRIMA41-int|LTR|ERV1	617601	NM_175056	131368	Hs.352213	XM_005247110	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
592	chr17	69626818	69630855	+	0	NA	Intergenic	Intergenic	-397959	NR_110124	102606463	Hs.512309	NR_110124		LINC01152	CMPD|TCONS_00025128	long intergenic non-protein coding RNA 1152	ncRNA
3299	chr8	23710342	23712661	+	0	NA	intron (NM_003155, intron 1 of 3)	intron (NM_003155, intron 1 of 3)	819	NM_003155	6781	Hs.25590	XM_005273621	ENSG00000159167	STC1	STC	stanniocalcin 1	protein-coding
4420	chr3	36718581	36719430	+	0	NA	Intergenic	Intergenic	62347	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
4111	chr19	43031821	43033681	+	0	NA	promoter-TSS (NM_001184816)	promoter-TSS (NM_001184816)	-90	NM_001024912	634	Hs.512682	NM_001024912	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	protein-coding
4903	chr8	8774736	8775483	+	0	NA	Intergenic	Intergenic	-23978	NM_004225	9258	Hs.379414	XR_246634	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
1978	chr11	123300168	123302749	+	0	NA	Intergenic	CpG	-49238	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
2364	chr18	74170914	74172856	+	0	NA	intron (NM_014643, intron 2 of 7)	intron (NM_014643, intron 2 of 7)	35261	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
1640	chr1	151566217	151570436	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16336	NM_030918	81609	Hs.192326	XM_005245509	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
4118	chr19	44074918	44077000	+	0	NA	intron (NM_006297, intron 2 of 16)	L2a|LINE|L2	3771	NM_006297	7515	Hs.98493	NM_006297	ENSG00000073050	XRCC1	RCC	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding
173	chr10	20734993	20736959	+	0	NA	Intergenic	MIRb|SINE|MIR	-104923	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	ncRNA
66	chr1	117539143	117540682	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	-4460	NM_004258	9398	Hs.654598	NM_001256106	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
2709	chr3	15348420	15354250	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	22801	NM_004844	9467	Hs.257761	XM_005265588	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
2026	chr12	12425091	12426951	+	0	NA	Intergenic	L2c|LINE|L2	-6210	NM_002336	4040	Hs.658913	XM_005253375	ENSG00000070018	LRP6	ADCAD2	low density lipoprotein receptor-related protein 6	protein-coding
3130	chr6	46096719	46098756	+	0	NA	promoter-TSS (NM_014936)	promoter-TSS (NM_014936)	36	NM_014936	22875	Hs.643497	NM_014936	ENSG00000001561	ENPP4	NPP4	ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	protein-coding
793	chr2	218514539	218519372	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	104361	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
1205	chr5	140355720	140357481	+	0	NA	intron (NM_018899, intron 1 of 3)	intron (NM_018899, intron 1 of 3)	10248	NM_031883	56134	Hs.199343	NM_018899	ENSG00000243232	PCDHAC2	PCDH-ALPHA-C2	protocadherin alpha subfamily C, 2	protein-coding
1696	chr1	47652035	47660303	+	0	NA	promoter-TSS (NM_005764)	promoter-TSS (NM_005764)	-398	NM_005764	10158	Hs.431099	NM_005764	ENSG00000162366	PDZK1IP1	DD96|MAP17|RP1-18D14.5|SPAP	PDZK1 interacting protein 1	protein-coding
3168	chr6	117856020	117858842	+	0	NA	intron (NM_173674, intron 6 of 14)	intron (NM_173674, intron 6 of 14)	53611	NM_173674	285761	Hs.658304	XM_005266941	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
3674	chr10	73732229	73737440	+	0	NA	intron (NM_004273, intron 1 of 2)	intron (NM_004273, intron 1 of 2)	10714	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
3469	chr1	5657605	5658247	+	0	NA	Intergenic	Intergenic	33795	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	ncRNA
3625	chr10	47077994	47088441	+	0	NA	promoter-TSS (NM_001278794)	promoter-TSS (NM_001278794)	-317	NM_005972	5540	Hs.524719	NM_001278794	ENSG00000204174	NPY4R	NPY4-R|PP1|PPYR1|Y4	neuropeptide Y receptor Y4	protein-coding
59	chr1	88405105	88407034	+	0	NA	Intergenic	Intergenic	-568731	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	RP4-544H6.2	-	uncharacterized LOC100505768	ncRNA
4728	chr6	7129254	7131317	+	0	NA	intron (NM_001003700, intron 1 of 11)	intron (NM_001003700, intron 1 of 11)	22199	NM_001003699	6239	Hs.298248	XM_005249272	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
4572	chr4	140978761	140983194	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	94256	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
4546	chr4	57944562	57945878	+	0	NA	intron (NM_001553, intron 1 of 4)	intron (NM_001553, intron 1 of 4)	-30708	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	RP11-12A1.1	IGFBP7 antisense RNA 1	ncRNA
3388	chr9	123703232	123705550	+	0	NA	Intergenic	L2a|LINE|L2	-12940	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
2091	chr13	102300902	102303496	+	0	NA	intron (NM_004791, intron 7 of 10)	L2b|LINE|L2	159896	NM_001271756	9358	Hs.696554	XM_005254100	ENSG00000198542	ITGBL1	OSCP|TIED	integrin, beta-like 1 (with EGF-like repeat domains)	protein-coding
3329	chr9	86045453	86049168	+	0	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	35347	NM_001244960	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4161	chr2	33516091	33517353	+	0	NA	intron (NM_000627, intron 15 of 29)	intron (NM_000627, intron 15 of 29)	-144694	NM_170672	25780	Hs.143674	XM_005264246	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
1971	chr11	118064485	118067189	+	0	NA	intron (NM_001286571, intron 8 of 8)	intron (NM_001286571, intron 8 of 8)	18237	NM_153206	120425	Hs.16291	XM_005271406	ENSG00000160593	AMICA1	AMICA|CREA7-1|CREA7-4|Gm638|JAML	adhesion molecule, interacts with CXADR antigen 1	protein-coding
2358	chr18	55479345	55481864	+	0	NA	Intergenic	Intergenic	-10277	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase, aminophospholipid transporter, class I, type 8B, member 1	protein-coding
1226	chr5	157909657	157911681	+	0	NA	Intergenic	Intergenic	-73888	NR_109888	101927697	Hs.483960	XR_245280		LOC101927697	-	uncharacterized LOC101927697	ncRNA
1949	chr11	31004971	31007516	+	0	NA	intron (NM_020869, intron 1 of 19)	intron (NM_020869, intron 1 of 19)	7990	NM_020869	100506627	Hs.730375	NM_198462		DCDC5	-	doublecortin domain containing 5	protein-coding
1256	chr6	1067988	1070956	+	0	NA	intron (NR_027116, intron 1 of 3)	HAL1-3A_ME|LINE|L1	32095	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
2498	chr2	99821226	99823419	+	0	NA	Intergenic	MER11B|LTR|ERVK	24780	NR_028356	51263	Hs.346736	NM_145212	ENSG00000241962	MRPL30	L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28	mitochondrial ribosomal protein L30	protein-coding
2247	chr16	48532209	48535787	+	0	NA	Intergenic	Intergenic	110122	NM_153029	9683	Hs.511839	XM_005256262	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
1853	chr10	18688892	18690640	+	0	NA	5' UTR (NM_201570, exon 1 of 13)	5' UTR (NM_201570, exon 1 of 13)	253	NM_201570	783	Hs.59093	XM_005252587	ENSG00000165995	CACNB2	CACNLB2|CAVB2|MYSB	calcium channel, voltage-dependent, beta 2 subunit	protein-coding
4958	chr9	86046231	86048087	+	0	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	35498	NM_001244960	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
1016	chr4	94305351	94306825	+	0	NA	intron (NM_001286838, intron 7 of 14)	intron (NM_001286838, intron 7 of 14)	-443990	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
219	chr10	116673672	116679090	+	0	NA	Intergenic	Intergenic	-21571	NM_139169	142940	Hs.21187	NM_139169	ENSG00000165832	TRUB1	PUS4	TruB pseudouridine (psi) synthase family member 1	protein-coding
2300	chr17	55593223	55597388	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	227385	NM_001282544	101927581	Hs.540784	XM_005257905	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
2480	chr2	69524505	69527981	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	88143	NM_001244710	2673	Hs.580300	NM_001244710	ENSG00000198380	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
799	chr2	224560419	224562725	+	0	NA	Intergenic	Intergenic	-94355	NM_003469	7857	Hs.516726	XM_005246840	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
3734	chr11	58340248	58341968	+	0	NA	intron (NM_001143995, intron 1 of 8)	intron (NM_001143995, intron 1 of 8)	2282	NM_004811	9404	Hs.125474	XM_005274407	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
925	chr3	16515332	16520584	+	0	NA	intron (NM_015150, intron 2 of 9)	L2a|LINE|L2	37264	NM_015150	23180	Hs.98910	XM_005264985	ENSG00000131378	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
390	chr12	100866295	100868486	+	0	NA	promoter-TSS (NM_001206978)	promoter-TSS (NM_001206978)	-161	NM_001206979	9971	Hs.732506	XR_245969	ENSG00000012504	NR1H4	BAR|FXR|HRR-1|HRR1|RIP14	nuclear receptor subfamily 1, group H, member 4	protein-coding
1515	chr9	26242957	26244955	+	0	NA	Intergenic	Intergenic	177283	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
2368	chr19	43433431	43439830	+	0	NA	intron (NM_001206650, intron 1 of 4)	intron (NM_001206650, intron 1 of 4)	4700	NR_073194	5676	Hs.709203	NM_001206650		PSG7	PSBG-7|PSG1|PSGGA	pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene)	protein-coding
3357	chr9	72359215	72364294	+	0	NA	intron (NM_001099666, intron 2 of 7)	intron (NM_001099666, intron 2 of 7)	13122	NM_001099666	375743	Hs.744192	XM_005251976	ENSG00000188647	PTAR1	-	protein prenyltransferase alpha subunit repeat containing 1	protein-coding
1955	chr11	71653829	71662224	+	0	NA	intron (NR_024148, intron 1 of 8)	AluSx|SINE|Alu	18258	NR_024147	55298	Hs.368554	NM_018320	ENSG00000137522	RNF121	-	ring finger protein 121	protein-coding
945	chr3	55363493	55365589	+	0	NA	Intergenic	MIR|SINE|MIR	150885	NM_001256105	7474	Hs.643085	NM_001256105	ENSG00000114251	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
2784	chr3	109069308	109073713	+	0	NA	Intergenic	Intergenic	-15091	NM_018189	55211	Hs.317659	XM_005247576	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
206	chr10	91939089	91940302	+	0	NA	Intergenic	Intergenic	350445	NR_038382	643529	Hs.618956	NR_038382	ENSG00000232229	LINC00865	RP11-248C1.2	long intergenic non-protein coding RNA 865	ncRNA
959	chr3	108843888	108845806	+	0	NA	Intergenic	Intergenic	-7854	NM_014429	27136	Hs.591296	XM_005247362	ENSG00000114487	MORC1	CT33|MORC|ZCW6	MORC family CW-type zinc finger 1	protein-coding
3791	chr12	47351645	47353696	+	0	NA	Intergenic	Intergenic	-120716	NM_001281429	91523	Hs.560100	XM_005269224	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
3194	chr6	158938768	158940800	+	0	NA	Intergenic	Intergenic	-17684	NM_020823	57583	Hs.99145	XM_005267074	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
4917	chr8	101521172	101523427	+	0	NA	3' UTR (NM_001270379, exon 6 of 6)	3' UTR (NM_001270379, exon 6 of 6)	49640	NM_001270378	157567	Hs.530199	XM_005250797	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
331	chr12	8826953	8829733	+	0	NA	Intergenic	LTR24B|LTR|ERV1	-12910	NM_003480	8076	Hs.512842	XM_005253485	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
358	chr12	67395499	67397478	+	0	NA	Intergenic	Intergenic	-266573	NM_018448	55832	Hs.546407	NM_018448		CAND1	TIP120|TIP120A	cullin-associated and neddylation-dissociated 1	protein-coding
2746	chr3	48466120	48479653	+	0	NA	TTS (NM_024661)	TTS (NM_024661)	-1426	NM_001130082	5364	Hs.476209	XM_005265232	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
3606	chr1	231512387	231514061	+	0	NA	intron (NM_022051, intron 1 of 4)	L2a|LINE|L2	39542	NM_001261462	83932	Hs.554892	XM_005273284	ENSG00000010072	SPRTN	C1orf124|DDDL1880|DVC1|PRO4323|Spartan|dJ876B10.3	SprT-like N-terminal domain	protein-coding
737	chr2	76504431	76505567	+	0	NA	Intergenic	Intergenic	-566888	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
4338	chr20	36152662	36154076	+	0	NA	promoter-TSS (NM_001167823)	promoter-TSS (NM_001167823)	-416	NM_001167823	10904	Hs.472651	NM_001167820	ENSG00000166619	BLCAP	BC10	bladder cancer associated protein	protein-coding
2228	chr15	91100215	91110310	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	32144	NM_022769	64784	Hs.567572	XM_005254968	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
3037	chr5	171843564	171849317	+	0	NA	intron (NM_001017995, intron 2 of 12)	intron (NM_001017995, intron 2 of 12)	35087	NM_001017995	285590	Hs.285666	XM_005265888	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
2070	chr12	93956372	93958831	+	0	NA	Intergenic	Intergenic	-5997	NM_003877	8835	Hs.737206	XM_005269213	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
4112	chr19	43264597	43267919	+	0	NA	intron (NM_001130168, intron 1 of 4)	intron (NM_001130168, intron 1 of 4)	3573	NM_001130168	440533	Hs.466843	NM_001130167	ENSG00000124467	PSG8	PSG1	pregnancy specific beta-1-glycoprotein 8	protein-coding
3830	chr12	102959947	102961829	+	0	NA	Intergenic	Intergenic	-86510	NM_001111283	3479	Hs.160562	XM_005268835	ENSG00000017427	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
4336	chr20	31974646	31975634	+	0	NA	exon (NM_016408, exon 6 of 14)	exon (NM_016408, exon 6 of 14)	14235	NM_016082	51654	Hs.435952	XM_005260434	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
220	chr10	122917203	122919023	+	0	NA	Intergenic	HAL1|LINE|L1	-307422	NR_033850	283089	Hs.568750	XR_246085	ENSG00000227165	WDR11-AS1	RP11-323P17.1	WDR11 antisense RNA 1	ncRNA
1312	chr6	76159135	76160711	+	0	NA	intron (NM_015687, intron 1 of 5)	AluJr|SINE|Alu	43573	NM_015687	27145	Hs.696158	XM_005248713	ENSG00000118407	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
4473	chr3	112370919	112375522	+	0	NA	Intergenic	Intergenic	-13230	NM_199511	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
2365	chr19	45088406	45096737	+	0	NA	Intergenic	Intergenic	-24369	NM_001205280	147710	Hs.512509	XM_005258540	ENSG00000216588	IGSF23	-	immunoglobulin superfamily, member 23	protein-coding
1263	chr6	6810902	6813027	+	0	NA	Intergenic	Intergenic	-188905	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS|RP3-398D13.3	LY86 antisense RNA 1	ncRNA
4612	chr5	17400961	17402525	+	0	NA	Intergenic	LTR23|LTR|ERV1	-14324	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
4170	chr2	43388910	43391859	+	0	NA	Intergenic	Intergenic	63361	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
3811	chr12	74763985	74764995	+	0	NA	Intergenic	Intergenic	-78079	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
4017	chr17	36355744	36358171	+	0	NA	intron (NR_036750, intron 9 of 11)	intron (NR_036750, intron 9 of 11)	-8291	NM_001123391	729873	Hs.735975	XM_005257634	ENSG00000197681	TBC1D3	PRC17|TBC1D3A|TBC1D3F	TBC1 domain family, member 3	protein-coding
572	chr17	6810521	6811560	+	0	NA	Intergenic	AluSx1|SINE|Alu	54145	NR_002710	245	Hs.378695	NR_002710		ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
3762	chr12	51052436	51054419	+	0	NA	intron (NM_173602, intron 3 of 37)	L4|LINE|RTE	-104362	NM_005171	466	Hs.648565	NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
3984	chr16	48533537	48534883	+	0	NA	Intergenic	Intergenic	109910	NM_153029	9683	Hs.511839	XM_005256262	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
4159	chr2	33294258	33296157	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-64457	NM_001166264	4052	Hs.619315	XM_005264315	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
1448	chr7	151614269	151616147	+	0	NA	Intergenic	Intergenic	-38256	NM_145292	168391	Hs.647077	NM_145292	ENSG00000106648	GALNTL5	GALNACT19|GALNT15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding
2549	chr2	208198554	208200992	+	0	NA	Intergenic	Intergenic	-80733	NR_110283	101927865	Hs.622883	XR_241391	ENSG00000234902	AC007879.2	AC007879.5	uncharacterized LOC101927865	ncRNA
3795	chr12	49594734	49596195	+	0	NA	Intergenic	Intergenic	-12357	NM_006009	7846	Hs.654422	XM_005269143	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin, alpha 1a	protein-coding
3146	chr6	79355648	79357635	+	0	NA	Intergenic	L1PA4|LINE|L1	-220620	NM_001010844	134728	Hs.656212	XM_005248654	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
4913	chr8	71573705	71577476	+	0	NA	TTS (NR_038881)	TTS (NR_038881)	5857	NM_016027	51110	Hs.118554	NM_016027	ENSG00000147592	LACTB2	-	lactamase, beta 2	protein-coding
1573	chrX	64820761	64822534	+	0	NA	Intergenic	Intergenic	-49346	NR_033742	83957	Hs.652967	NR_033742	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
1472	chr8	101501850	101504747	+	0	NA	Intergenic	Intergenic	68641	NM_001270378	157567	Hs.530199	XM_005250797	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
3684	chr10	91106294	91107013	+	0	NA	Intergenic	Intergenic	14414	NM_001031683	3437	Hs.744072	NM_001031683	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G	interferon-induced protein with tetratricopeptide repeats 3	protein-coding
2020	chr12	7949767	7952399	+	0	NA	Intergenic	Intergenic	9088	NM_024865	79923	Hs.635882	XM_005253484	ENSG00000111704	NANOG	-	Nanog homeobox	protein-coding
4485	chr3	124563002	124565819	+	0	NA	intron (NM_002213, intron 4 of 14)	intron (NM_002213, intron 4 of 14)	41734	NM_002213	3693	Hs.536663	XM_005247436	ENSG00000082781	ITGB5	-	integrin, beta 5	protein-coding
3524	chr1	150953187	150955944	+	0	NA	promoter-TSS (NM_003568)	promoter-TSS (NM_003568)	66	NM_003568	8416	Hs.3346	XM_005245539	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
3770	chr12	7999548	8006127	+	0	NA	intron (NM_001286237, intron 1 of 9)	L2c|LINE|L2	22798	NM_153449	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
2622	chr20	16387321	16389797	+	0	NA	intron (NM_001199865, intron 15 of 24)	MER102b|DNA|hAT-Charlie	165520	NM_024704	55614	Hs.101774	XM_005260750	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
2799	chr3	122478731	122481094	+	0	NA	intron (NM_024610, intron 3 of 7)	L2c|LINE|L2	32754	NM_024610	79663	Hs.29169	XM_005247761	ENSG00000169087	HSPBAP1	PASS1	HSPB (heat shock 27kDa) associated protein 1	protein-coding
3725	chr11	28637562	28638892	+	0	NA	Intergenic	Intergenic	-139132	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA mir-8068	ncRNA
1772	chr1	204694687	204699086	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-42289	NM_201630	10446	Hs.26312	XM_005244827	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
418	chr13	32622696	32623813	+	0	NA	intron (NM_023037, intron 1 of 60)	intron (NM_023037, intron 1 of 60)	-17478	NR_103839	100507099	Hs.536364	NR_103839		FRY-AS1	RP11-207N4.2	FRY antisense RNA 1	ncRNA
4466	chr3	111450865	111455244	+	0	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	1727	NM_001134437	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
2324	chr18	55473377	55476333	+	0	NA	Intergenic	Intergenic	-4528	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase, aminophospholipid transporter, class I, type 8B, member 1	protein-coding
4174	chr2	54771831	54774610	+	0	NA	intron (NM_003128, intron 2 of 35)	intron (NM_003128, intron 2 of 35)	-12311	NM_178313	6711	Hs.705692	XM_005264517	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
933	chr3	31206692	31208769	+	0	NA	Intergenic	Intergenic	-271577	NM_207359	339896	Hs.657052	NM_207359	ENSG00000144644	GADL1	-	glutamate decarboxylase-like 1	protein-coding
2217	chr15	77358401	77360825	+	0	NA	intron (NM_198902, intron 1 of 5)	intron (NM_198902, intron 1 of 5)	3957	NM_001168412	10099	Hs.744863	NM_001168412	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
348	chr12	20569871	20571670	+	0	NA	intron (NM_000921, intron 1 of 15)	MIR|SINE|MIR	48591	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
2333	chr18	13216918	13219086	+	0	NA	promoter-TSS (NM_181482)	promoter-TSS (NM_181482)	-727	NM_181482	753	Hs.745141	XM_005258140	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
4785	chr6	79356183	79357512	+	0	NA	Intergenic	L1PA4|LINE|L1	-220414	NM_001010844	134728	Hs.656212	XM_005248654	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
2052	chr12	52354522	52357033	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	8613	NM_020327	91	Hs.438918	NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor, type IB	protein-coding
4496	chr3	155381423	155384214	+	0	NA	intron (NM_014996, intron 1 of 21)	MLT1J2|LTR|ERVL-MaLR	11287	NM_001130961	23007	Hs.567423	XM_005247238	ENSG00000114805	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
1090	chr4	104343118	104345300	+	0	NA	Intergenic	Intergenic	-224643	NM_001286734	1062	Hs.75573	XM_005262699	ENSG00000138778	CENPE	CENP-E|KIF10|PPP1R61	centromere protein E, 312kDa	protein-coding
627	chr18	53834987	53836387	+	0	NA	Intergenic	Intergenic	-30920	NR_040025	100505474	Hs.662191	XR_245454	ENSG00000267712	RP11-456O19.4	-	uncharacterized LOC100505474	ncRNA
993	chr3	189614134	189615656	+	0	NA	3' UTR (NM_001114981, exon 11 of 11)	3' UTR (NM_001114981, exon 11 of 11)	67184	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
2868	chr4	38968293	38969835	+	0	NA	3' UTR (NM_024943, exon 7 of 7)	3' UTR (NM_024943, exon 7 of 7)	64977	NM_024943	80008	Hs.374147	XM_005262669	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
1308	chr6	52652709	52654282	+	0	NA	Intergenic	Intergenic	15169	NM_145740	2938	Hs.446309	XM_005249034		GSTA1	GST2|GSTA1-1|GTH1	glutathione S-transferase alpha 1	protein-coding
2503	chr2	101849931	101851849	+	0	NA	Intergenic	LTR2|LTR|ERV1	-18455	NM_017546	55571	Hs.744080	NM_017546	ENSG00000158435	CNOT11	C2orf29	CCR4-NOT transcription complex, subunit 11	protein-coding
4100	chr19	46774160	46776456	+	0	NA	intron (NR_046936, intron 3 of 3)	ERV3-16A3_LTR|LTR|ERVL	-24995	NM_152795	64344	Hs.420830	XM_005259152	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding
4458	chr3	108272557	108275142	+	0	NA	intron (NM_020890, intron 17 of 20)	intron (NM_020890, intron 17 of 20)	-25680	NM_014981	22989	Hs.731060	NM_014981	ENSG00000144821	MYH15	-	myosin, heavy chain 15	protein-coding
388	chr12	97431070	97433611	+	0	NA	Intergenic	Intergenic	131096	NM_001135175	121441	Hs.270084	XM_005268644	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
1425	chr7	107998256	107999933	+	0	NA	intron (NM_001193582, intron 2 of 30)	intron (NM_001193582, intron 2 of 30)	97747	NM_001193584	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
4826	chr6	167733047	167734653	+	0	NA	Intergenic	Intergenic	-4724	NM_031949	83887	Hs.520554	NM_031949		TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase-like family, member 2	protein-coding
4190	chr2	69389742	69390932	+	0	NA	intron (NM_032208, intron 13 of 17)	intron (NM_032208, intron 13 of 17)	59523	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
3083	chr6	3796683	3799399	+	0	NA	Intergenic	Intergenic	-45795	NM_183373	221749	Hs.484500	XM_005248938	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
1842	chr10	116274820	116287955	+	0	NA	intron (NM_001003407, intron 6 of 21)	intron (NM_001003407, intron 6 of 21)	5298	NM_006720	3983	Hs.593868	XM_005269818	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
485	chr14	96602923	96605525	+	0	NA	Intergenic	AluYc|SINE|Alu	-66911	NM_000623	624	Hs.726620	XM_005267979	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
2143	chr14	65104926	65108624	+	0	NA	Intergenic	Intergenic	-64418	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
3316	chr8	120931327	120933205	+	0	NA	intron (NM_001283012, intron 1 of 6)	intron (NM_001283012, intron 1 of 6)	46371	NM_022783	64798	Hs.112981	XM_005251022	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
1270	chr6	11414272	11416857	+	0	NA	Intergenic	Intergenic	-32983	NR_073131	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
3881	chr14	31909952	31912343	+	0	NA	intron (NR_110045, intron 2 of 3)	intron (NR_110045, intron 2 of 3)	15533	NM_080664	112487	Hs.116014	NM_080664	ENSG00000129480	DTD2	C14orf126	D-tyrosyl-tRNA deacylase 2 (putative)	protein-coding
1645	chr1	171785679	171788137	+	0	NA	Intergenic	Intergenic	-23710	NM_001278252	26052	Hs.654775	XM_005245079	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
1389	chr7	15055050	15056884	+	0	NA	Intergenic	Intergenic	-174892	NM_004080	1607	Hs.567255	XM_005249628	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase, beta 90kDa	protein-coding
324	chr12	69417173	69419561	+	0	NA	Intergenic	Intergenic	-61347	NM_001874	1368	Hs.654387	XM_005268653	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding
3508	chr1	84736927	84737692	+	0	NA	Intergenic	MER67B|LTR|ERV1	-26740	NM_001010971	148418	Hs.591445	NM_001010971	ENSG00000203943	SAMD13	RP11-376N17.1	sterile alpha motif domain containing 13	protein-coding
637	chr19	28462285	28464596	+	0	NA	Intergenic	L2a|LINE|L2	-178592	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
2066	chr12	88168487	88178582	+	0	NA	Intergenic	L1M1|LINE|L1	4954	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
4223	chr2	134081365	134082841	+	0	NA	intron (NM_207363, intron 3 of 19)	intron (NM_207363, intron 3 of 19)	58336	NR_110294	101928161	Hs.661917	XR_244858	ENSG00000226953	AC010890.1	-	uncharacterized LOC101928161	ncRNA
752	chr2	100497953	100499371	+	0	NA	intron (NM_002285, intron 6 of 23)	intron (NM_002285, intron 6 of 23)	223383	NM_001025108	3899	Hs.444414	XM_005263941	ENSG00000144218	AFF3	LAF4|MLLT2-like	AF4/FMR2 family, member 3	protein-coding
2679	chr22	27634349	27640825	+	0	NA	Intergenic	Intergenic	559899	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
1232	chr5	174714273	174716107	+	0	NA	Intergenic	Intergenic	155973	NM_000794	1812	Hs.2624	NM_000794	ENSG00000184845	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
2899	chr4	129553164	129559835	+	0	NA	Intergenic	Intergenic	-174279	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
2941	chr5	95862104	95867303	+	0	NA	Intergenic	Intergenic	-95718	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
3045	chr6	64092082	64095423	+	0	NA	Intergenic	MIRc|SINE|MIR	-63870	NM_001143940	51557	Hs.149585	NM_001143940	ENSG00000146166	LGSN	GLULD1|LGS	lengsin, lens protein with glutamine synthetase domain	protein-coding
379	chr12	88136607	88137774	+	0	NA	Intergenic	Intergenic	41298	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
1639	chr1	145437430	145442605	+	0	NA	intron (NM_006472, intron 3 of 7)	intron (NM_006472, intron 3 of 7)	1579	NM_006472	10628	Hs.709057	NM_006472	ENSG00000117289	TXNIP	EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
3404	chrX	48692215	48694349	+	0	NA	intron (NM_013271, intron 1 of 2)	intron (NM_013271, intron 1 of 2)	758	NM_013271	27344	Hs.522640	XM_005272596	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
1035	chr4	23583319	23586273	+	0	NA	Intergenic	Intergenic	-120070	NR_039674	100616252		NR_039674	ENSG00000221466	MIR548AJ2	-	microRNA 548aj-2	ncRNA
3872	chr13	111208111	111208941	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	5545	NM_017817	55647	Hs.743563	NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
3367	chr9	89560714	89563222	+	0	NA	5' UTR (NM_002048, exon 1 of 1)	5' UTR (NM_002048, exon 1 of 1)	136	NM_002048	2619	Hs.65029	NM_002048	ENSG00000180447	GAS1	-	growth arrest-specific 1	protein-coding
3964	chr15	90223053	90224636	+	0	NA	TTS (NM_003847)	TTS (NM_003847)	-1196	NM_002666	5346	Hs.103253	XM_005254934	ENSG00000166819	PLIN1	FPLD4|PERI|PLIN	perilipin 1	protein-coding
1894	chr10	93270533	93272882	+	0	NA	intron (NM_001284274, intron 21 of 21)	MIRb|SINE|MIR	99510	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
535	chr16	65697408	65703188	+	0	NA	Intergenic	Intergenic	-90095	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
3138	chr6	52430403	52432983	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	10169	NM_012288	9697	Hs.520182	NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
683	chr2	16813800	16816333	+	0	NA	intron (NM_030797, intron 1 of 11)	L2|LINE|L2	32068	NM_030797	81553	Hs.467769	XM_005262629	ENSG00000197872	FAM49A	-	family with sequence similarity 49, member A	protein-coding
2260	chr16	73127669	73131476	+	0	NA	Intergenic	Intergenic	3324	NR_027756	283902	Hs.382776	NM_001101347	ENSG00000260880	HCCAT5	FJ222407|HTA|RP11-346C20.2	hepatocellular carcinoma associated transcript 5 (non-protein coding)	ncRNA
1215	chr5	148531142	148534613	+	0	NA	intron (NM_014945, intron 2 of 23)	intron (NM_014945, intron 2 of 23)	11823	NM_014945	22885	Hs.49688	XM_005268391	ENSG00000173210	ABLIM3	-	actin binding LIM protein family, member 3	protein-coding
4378	chr22	27637614	27639862	+	0	NA	Intergenic	Intergenic	558748	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
2995	chr5	99699679	99702316	+	0	NA	Intergenic	Intergenic	22961	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
3886	chr14	36417023	36419377	+	0	NA	Intergenic	Intergenic	-121433	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	RP11-259K15.3	long intergenic non-protein coding RNA 609	ncRNA
1712	chr1	100109418	100114179	+	0	NA	5' UTR (NM_017734, exon 1 of 8)	5' UTR (NM_017734, exon 1 of 8)	367	NM_017734	54873	Hs.483993	NM_017734	ENSG00000099260	PALMD	C1orf11|PALML	palmdelphin	protein-coding
2344	chr18	45437556	45445710	+	0	NA	intron (NM_001003652, intron 1 of 10)	L1ME3C|LINE|L1	15337	NM_005901	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
765	chr2	158950504	158952225	+	0	NA	intron (NM_001135098, intron 2 of 8)	intron (NM_001135098, intron 2 of 8)	-7018	NM_173355	151531	Hs.128427	XM_005246358	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
2552	chr2	211030285	211037356	+	0	NA	intron (NM_152519, intron 1 of 14)	intron (NM_152519, intron 1 of 14)	2231	NM_152519	151050	Hs.591638	XM_005246328	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1-like	protein-coding
5007	chrX	56156366	56156983	+	0	NA	Intergenic	L1PA3|LINE|L1	-102148	NM_007250	11279	Hs.646614	XM_005261977	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
312	chr12	7977583	7980452	+	0	NA	intron (NM_153449, intron 8 of 11)	intron (NM_153449, intron 8 of 11)	37022	NM_024865	79923	Hs.635882	XM_005253484	ENSG00000111704	NANOG	-	Nanog homeobox	protein-coding
2521	chr2	134190582	134194135	+	0	NA	intron (NR_107007, intron 1 of 6)	intron (NR_107007, intron 1 of 6)	3854	NR_107007	102466866		NR_107007		MIR7853	hsa-mir-7853	microRNA mir-7853	ncRNA
4452	chr3	100790661	100791852	+	0	NA	Intergenic	Intergenic	-78922	NM_015429	25890	Hs.477015	XM_005247281	ENSG00000154175	ABI3BP	NESHBP|TARSH	ABI family, member 3 (NESH) binding protein	protein-coding
1002	chr4	17824926	17826537	+	0	NA	intron (NR_073124, intron 8 of 19)	MIR|SINE|MIR	13295	NM_022346	64151	Hs.567567	NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex, subunit G	protein-coding
2435	chr2	18059061	18061901	+	0	NA	intron (NM_002252, intron 1 of 2)	CpG	557	NM_002252	3790	Hs.414489	XM_005262614	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
4837	chr7	6055208	6056484	+	0	NA	intron (NM_006303, intron 2 of 3)	intron (NM_006303, intron 2 of 3)	6964	NM_006303	7965	Hs.520205	XM_005249847	ENSG00000106305	AIMP2	JTV-1|JTV1|P38	aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	protein-coding
370	chr12	74801791	74803802	+	0	NA	Intergenic	Intergenic	-116385	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
3398	chr9	140504647	140508673	+	0	NA	intron (NM_152285, intron 1 of 7)	intron (NM_152285, intron 1 of 7)	6564	NM_152285	92714	Hs.12999	XM_005266119	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
567	chr17	67583995	67586121	+	0	NA	Intergenic	Intergenic	-5070	NR_109971	101928122	Hs.732709	XR_243747	ENSG00000227517	AC003051.1	-	uncharacterized LOC101928122	ncRNA
4925	chr9	2801591	2804229	+	0	NA	Intergenic	Intergenic	41220	NM_014878	9933	Hs.493309	XM_005251635	ENSG00000080608	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
3749	chr11	119999257	120000036	+	0	NA	intron (NM_012101, intron 1 of 8)	intron (NM_012101, intron 1 of 8)	9217	NM_012101	23650	Hs.504115	XM_005271487	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
4897	chr7	141400754	141402616	+	0	NA	intron (NM_001080392, intron 1 of 8)	CpG	268	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
3115	chr6	22892058	22893763	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	323232	NM_138574	154150	Hs.629246	NM_138574	ENSG00000112273	HDGFL1	PWWP1|dJ309H15.1	hepatoma derived growth factor-like 1	protein-coding
380	chr12	88139491	88141153	+	0	NA	Intergenic	Intergenic	38166	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
1279	chr6	19279094	19280397	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-557856	NM_001546	3400	Hs.663469	XM_005249076		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
965	chr3	113216123	113218440	+	0	NA	intron (NM_144718, intron 4 of 17)	intron (NM_144718, intron 4 of 17)	16753	NM_144718	152185	Hs.477144	XM_005247143	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
3206	chr7	25885454	25890825	+	0	NA	Intergenic	Intergenic	-7509	NR_046486	100873753		NR_046486		RNU6-16P	RNU6-16	RNA, U6 small nuclear 16, pseudogene	snRNA
2079	chr12	113353398	113355761	+	0	NA	intron (NM_016816, intron 4 of 5)	intron (NM_016816, intron 4 of 5)	9840	NM_001032409	4938	Hs.524760	NM_001032409	ENSG00000089127	OAS1	IFI-4|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1, 40/46kDa	protein-coding
2974	chr5	58191535	58195304	+	0	NA	Intergenic	Intergenic	102340	NM_001197223	5144	Hs.117545	XM_005248537	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
1395	chr7	27316628	27318566	+	0	NA	Intergenic	Intergenic	35433	NM_001989	2128	Hs.369879	XM_005249639		EVX1	-	even-skipped homeobox 1	protein-coding
286	chr11	103721341	103722462	+	0	NA	Intergenic	L3b|LINE|CR1	1267	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
1075	chr4	59364623	59366778	+	0	NA	Intergenic	LTR84b|LTR|ERVL	-1389149	NM_001253835	3490	Hs.691061	NM_001253835	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
800	chr2	228016194	228020805	+	0	NA	intron (NM_000092, intron 1 of 47)	intron (NM_000092, intron 1 of 47)	10776	NM_000092	1286	Hs.591645	XM_005246281	ENSG00000081052	COL4A4	CA44	collagen, type IV, alpha 4	protein-coding
2426	chr2	241188632	241196908	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-112697	NM_148961	150677	Hs.148586	NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
3125	chr6	40903457	40905647	+	0	NA	Intergenic	Intergenic	102386	NM_173561	222643	Hs.158357	NM_173561	ENSG00000124602	UNC5CL	MUXA|ZUD	unc-5 homolog C (C. elegans)-like	protein-coding
4469	chr3	111457538	111459042	+	0	NA	intron (NM_001134437, intron 1 of 17)	MIR3|SINE|MIR	6963	NM_001134437	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
1365	chr6	143152858	143154691	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	112564	NM_006734	3097	Hs.510172	XM_005266956	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
3613	chr1	236065952	236067248	+	0	NA	Intergenic	MIRb|SINE|MIR	-19592	NR_102436	1130	Hs.532411	XM_005273027	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
4563	chr4	123718785	123720242	+	0	NA	Intergenic	Intergenic	-28350	NM_002006	2247	Hs.284244	XM_005262836	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2 (basic)	protein-coding
1779	chr1	209438629	209441709	+	0	NA	Intergenic	L3|LINE|CR1	-161999	NM_001104548	642587	Hs.510543	XM_005273225		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
1568	chrX	43900180	43904438	+	0	NA	Intergenic	Intergenic	-69388	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
607	chr18	25657854	25660315	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	98361	NM_001792	1000	Hs.606106	XM_005258181	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
1807	chr1	236065812	236067417	+	0	NA	Intergenic	MIRb|SINE|MIR	-19606	NR_102436	1130	Hs.532411	XM_005273027	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
2902	chr4	140577552	140580085	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-8104	NM_001204368	4258	Hs.81874	XM_005263006	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
3093	chr6	7690568	7695463	+	0	NA	Intergenic	Intergenic	-33996	NM_001718	654	Hs.285671	XM_005249305	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
2508	chr2	109208493	109213837	+	0	NA	intron (NM_001193488, intron 1 of 9)	MER33|DNA|hAT-Charlie	6243	NM_001193488	3987	Hs.613268	XM_005263946	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
1073	chr4	57983998	57986346	+	0	NA	intron (NR_034081, intron 1 of 4)	intron (NR_034081, intron 1 of 4)	-8621	NM_001253835	3490	Hs.691061	NM_001253835	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
2187	chr15	40038588	40041834	+	0	NA	intron (NM_152597, intron 5 of 11)	intron (NM_152597, intron 5 of 11)	34828	NM_152597	161835	Hs.129598	XM_005254208	ENSG00000150667	FSIP1	-	fibrous sheath interacting protein 1	protein-coding
3399	chrX	106953162	106955266	+	0	NA	Intergenic	Intergenic	5497	NM_001015881	1831	Hs.522074	XM_005262098	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
3860	chr13	45427849	45429162	+	0	NA	Intergenic	Intergenic	-44739	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330|RP11-96M12.1	long intergenic non-protein coding RNA 330	ncRNA
2844	chr4	129267824	129272635	+	0	NA	Intergenic	Intergenic	-60245	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
3575	chr1	202053450	202056682	+	0	NA	Intergenic	Intergenic	-36963	NM_004767	9283	Hs.132049	NM_004767		GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
816	chr20	30572415	30577234	+	0	NA	intron (NM_001011718, intron 1 of 2)	(CAGA)n|Simple_repeat|Simple_repeat	19019	NM_001011718	343702	Hs.666444	NM_001011718		XKR7	C20orf159|dJ310O13.4	XK, Kell blood group complex subunit-related family, member 7	protein-coding
3031	chr5	154207009	154210835	+	0	NA	intron (NM_032385, intron 5 of 8)	intron (NM_032385, intron 5 of 8)	21291	NM_032385	10826	Hs.713175	XM_005268356	ENSG00000170271	FAXDC2	C5orf4	fatty acid hydroxylase domain containing 2	protein-coding
4260	chr2	228028264	228030355	+	0	NA	promoter-TSS (NM_000091)	promoter-TSS (NM_000091)	28	NM_000091	1285	Hs.570065	XM_005246275	ENSG00000169031	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
4010	chr16	85423688	85425300	+	0	NA	Intergenic	Intergenic	-84563	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
1062	chr4	41571939	41576269	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-40685	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
3159	chr6	112192873	112195784	+	0	NA	5' UTR (NM_002037, exon 1 of 14)	5' UTR (NM_002037, exon 1 of 14)	327	NM_002037	2534	Hs.664520	XM_005266887	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN oncogene related to SRC, FGR, YES	protein-coding
3112	chr6	22111504	22118233	+	0	NA	intron (NR_015410, intron 9 of 11)	intron (NR_015410, intron 9 of 11)	32554	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
3169	chr6	119860476	119863688	+	0	NA	Intergenic	L1MEf|LINE|L1	-49615	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
1700	chr1	61597306	61600435	+	0	NA	intron (NM_001134673, intron 2 of 10)	intron (NM_001134673, intron 2 of 10)	50890	NM_001134673	4774	Hs.744898	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
2609	chr20	4021501	4023320	+	0	NA	Intergenic	Intergenic	-26194	NM_001134338	11237	Hs.589884	NM_001134337	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
4240	chr2	175480553	175481398	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	18332	NM_003387	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
445	chr14	22900877	22902961	+	0	NA	Intergenic	Intergenic	156224	NM_001344	1603	Hs.82890	NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
3261	chr7	98038201	98040119	+	0	NA	Intergenic	AluSg|SINE|Alu	-8733	NM_018842	55971	Hs.656063	XM_005250495	ENSG00000006453	BAIAP2L1	IRTKS	BAI1-associated protein 2-like 1	protein-coding
2131	chr14	32940420	32944240	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	143851	NM_004274	9472	Hs.509083	XM_005268219	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
1339	chr6	121841031	121844147	+	0	NA	Intergenic	MLT2D|LTR|ERVL	85844	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
2338	chr18	29089456	29094899	+	0	NA	intron (NM_001943, intron 1 of 14)	L2a|LINE|L2	14150	NM_001943	1829	Hs.412597	NM_001943	ENSG00000046604	DSG2	ARVC10|ARVD10|CDHF5|CMD1BB|HDGC	desmoglein 2	protein-coding
4002	chr16	69212632	69214557	+	0	NA	Intergenic	Intergenic	-7456	NM_006750	6645	Hs.461117	XM_005256120	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
3866	chr13	99158543	99162633	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	13791	NM_003576	8428	Hs.508514	XM_005254077	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
4741	chr6	13394657	13396446	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	12818	NM_001242630	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
3781	chr12	19772766	19773896	+	0	NA	Intergenic	Intergenic	179816	NM_001267043	121536	Hs.126497	XR_242886		AEBP2	-	AE binding protein 2	protein-coding
2120	chr14	65221297	65232631	+	0	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	25440	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA mir-7855	ncRNA
4603	chr5	175255488	175262347	+	0	NA	intron (NM_006650, intron 2 of 4)	L2c|LINE|L2	35307	NM_006650	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
4636	chr5	82858441	82860306	+	0	NA	intron (NM_004385, intron 12 of 14)	intron (NM_004385, intron 12 of 14)	91880	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
1858	chr10	21482666	21485486	+	0	NA	Intergenic	Intergenic	20845	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
718	chr2	67825802	67827897	+	0	NA	Intergenic	L1MEe|LINE|L1	202407	NM_019002	54465	Hs.353022	XM_005264374	ENSG00000143971	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
1581	chrX	76188966	76194408	+	0	NA	Intergenic	Intergenic	-51902	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
2147	chr14	68913138	68915793	+	0	NA	intron (NM_133510, intron 9 of 10)	intron (NM_133510, intron 9 of 10)	346166	NM_004926	677	Hs.707091	XM_005268025	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
4689	chr5	169948804	169950651	+	0	NA	intron (NM_001278339, intron 1 of 7)	intron (NM_001278339, intron 1 of 7)	18687	NM_001278340	30820	Hs.484111	NM_001034837	ENSG00000182132	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
1604	chrX	132677830	132679161	+	0	NA	intron (NM_004484, intron 7 of 7)	intron (NM_004484, intron 7 of 7)	-129290	NM_001448	2239	Hs.58367	XM_005262398		GPC4	K-glypican	glypican 4	protein-coding
1507	chr9	2558210	2561283	+	0	NA	intron (NR_015375, intron 1 of 3)	L1M1|LINE|L1	-62047	NM_001018056	7436	Hs.370422	XM_005251576	ENSG00000147852	VLDLR	CARMQ1|CHRMQ1|VLDLRCH	very low density lipoprotein receptor	protein-coding
3997	chr16	65155473	65156645	+	0	NA	promoter-TSS (NM_001797)	promoter-TSS (NM_001797)	-140	NM_001797	1009	Hs.116471	XM_005255761		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
868	chr20	61821594	61823611	+	0	NA	Intergenic	Intergenic	12750	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3	microRNA 124-3	ncRNA
4592	chr4	185733304	185735406	+	0	NA	promoter-TSS (NM_001286708)	promoter-TSS (NM_001286708)	-942	NM_001286708	2180	Hs.406678	XM_005262827	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long-chain family member 1	protein-coding
4096	chr18	56218620	56221212	+	0	NA	intron (NM_052947, intron 4 of 12)	L2a|LINE|L2	76273	NM_052947	115701	Hs.628152	XM_005266646	ENSG00000198796	ALPK2	HAK	alpha-kinase 2	protein-coding
4736	chr6	11366006	11369481	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	14838	NM_001142393	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
1140	chr5	5017235	5020353	+	0	NA	Intergenic	Intergenic	-15678	NR_026994	340094	Hs.665092	NR_026994	ENSG00000215231	LINC01020	-	long intergenic non-protein coding RNA 1020	ncRNA
4922	chr8	135869768	135870978	+	0	NA	Intergenic	MIRb|SINE|MIR	-53185	NR_029599	407033		NR_029599	ENSG00000199153	MIR30D	MIRN30D	microRNA 30d	ncRNA
3417	chrX	40725464	40727512	+	0	NA	Intergenic	Intergenic	-34039	NR_027761	100132831	Hs.729923	NR_027761		LOC100132831	-	A20-binding inhibitor of NF-kappaB activation 2 pseudogene	pseudo
275	chr11	91714553	91716096	+	0	NA	Intergenic	Intergenic	-369938	NM_001008781	120114	Hs.98523	XM_005273759	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
2035	chr12	19835395	19837581	+	0	NA	Intergenic	LTR16A|LTR|ERVL	242973	NM_001267043	121536	Hs.126497	XR_242886		AEBP2	-	AE binding protein 2	protein-coding
197	chr10	86585736	86587069	+	0	NA	Intergenic	Intergenic	401464	NM_001284242	54462	Hs.461988	XM_005269904	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
4459	chr3	108873626	108876059	+	0	NA	Intergenic	Intergenic	19281	NR_033977	401081	Hs.280892	NR_033977	ENSG00000241224	FLJ22763	RP11-59E19.1	uncharacterized LOC401081	ncRNA
2208	chr15	68675869	68677903	+	0	NA	intron (NM_001004439, intron 2 of 29)	intron (NM_001004439, intron 2 of 29)	47606	NM_001004439	22801	Hs.458733	XM_005254227	ENSG00000137809	ITGA11	HsT18964|RP11-709B3.2	integrin, alpha 11	protein-coding
3314	chr8	118894788	118897422	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	227953	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
3626	chr10	48265715	48267457	+	0	NA	intron (NM_001040084, intron 9 of 11)	intron (NM_001040084, intron 9 of 11)	11382	NM_001040084	653145	Hs.744068	XR_246202	ENSG00000165390	ANXA8	ANX8	annexin A8	protein-coding
1731	chr1	154305942	154308375	+	0	NA	intron (NM_001005855, intron 11 of 11)	intron (NM_001005855, intron 11 of 11)	6882	NM_020452	57198	Hs.435700	XM_005245355	ENSG00000143515	ATP8B2	ATPID	ATPase, aminophospholipid transporter, class I, type 8B, member 2	protein-coding
853	chr20	23899505	23902454	+	0	NA	Intergenic	Intergenic	-40599	NM_001900	1473	Hs.121489	NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
4024	chr17	1363080	1364606	+	0	NA	Intergenic	Intergenic	-4282	NM_005206	1398	Hs.461896	NM_005206	ENSG00000167193	CRK	CRKII|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding
1500	chr9	97712143	97716653	+	0	NA	intron (NM_001193329, intron 6 of 15)	intron (NM_001193329, intron 6 of 15)	-113234	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA mir-6081	ncRNA
4812	chr6	147233781	147237299	+	0	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-110580	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
4275	chr2	240551504	240553418	+	0	NA	Intergenic	Intergenic	-132093	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
4393	chr22	37572384	37577513	+	0	NA	Intergenic	Intergenic	9382	NM_182486	114904	Hs.22011	XM_005261325	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
2136	chr14	37442232	37444415	+	0	NA	intron (NM_001171170, intron 1 of 10)	intron (NM_001171170, intron 1 of 10)	-21727	NR_039725	100616280		NR_039725		MIR4503	-	microRNA 4503	ncRNA
4175	chr2	55323556	55325122	+	0	NA	Intergenic	Intergenic	-46605	NM_153828	57142	Hs.637850	XM_005264434	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
4103	chr19	10146767	10148712	+	0	NA	Intergenic	AluSz|SINE|Alu	-4293	NR_027300	388503	Hs.655363	NM_001013640	ENSG00000167798	C3P1	CPLP	complement component 3 precursor pseudogene	pseudo
2685	chr22	18154871	18157576	+	0	NA	intron (NR_073068, intron 2 of 4)	AluY|SINE|Alu	17795	NR_073068	23786	Hs.631672	XM_005261231	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
4073	chr18	13217218	13218491	+	0	NA	promoter-TSS (NM_181482)	promoter-TSS (NM_181482)	-875	NM_181482	753	Hs.745141	XM_005258140	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
3410	chrX	106215323	106220326	+	0	NA	intron (NM_001085354, intron 9 of 16)	intron (NM_001085354, intron 9 of 16)	25650	NM_024657	79710	Hs.496544	XM_005262190	ENSG00000133131	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
3517	chr1	120587282	120588393	+	0	NA	intron (NM_024408, intron 1 of 33)	intron (NM_024408, intron 1 of 33)	24480	NM_001200001	4853	Hs.487360	XM_005270901	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
1295	chr6	35337547	35339389	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	28133	NM_177435	5467	Hs.696032	XM_005249191	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator-activated receptor delta	protein-coding
3028	chr5	145154741	145157569	+	0	NA	intron (NM_205846, intron 5 of 6)	Tigger7|DNA|TcMar-Tigger	58777	NM_138492	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
2832	chr4	13596683	13602015	+	0	NA	intron (NM_148894, intron 10 of 25)	intron (NM_148894, intron 10 of 25)	29979	NM_148894	259282	Hs.744935	XM_005248150	ENSG00000038219	BOD1L1	BOD1L|FAM44A	biorientation of chromosomes in cell division 1-like 1	protein-coding
3978	chr16	1046982	1048365	+	0	NA	Intergenic	CpG	15865	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
1111	chr4	160606001	160607514	+	0	NA	Intergenic	Intergenic	417759	NM_014247	9693	Hs.744884	XM_005263358	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
3281	chr7	134273735	134282252	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	44144	NM_001080538	441282	Hs.729418	XM_005250364	ENSG00000227471	AKR1B15	AKR1B10L	aldo-keto reductase family 1, member B15	protein-coding
3249	chr7	67785636	67787422	+	0	NA	Intergenic	Intergenic	985566	NR_108104	101929736	Hs.634050	XR_242296		RP11-166O4.5	-	uncharacterized LOC101929736	ncRNA
3271	chr7	110161516	110163946	+	0	NA	Intergenic	Intergenic	-562461	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	eukaryotic translation initiation factor 3, subunit I pseudogene 1	pseudo
4055	chr17	68070556	68071404	+	0	NA	promoter-TSS (NM_170741)	promoter-TSS (NM_170741)	-386	NM_001270422	3773	Hs.463985	XM_005257333	ENSG00000153822	KCNJ16	BIR9|KIR5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
4608	chr5	10724387	10726038	+	0	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	36175	NM_004394	1611	Hs.75189	XM_005248261	ENSG00000112977	DAP	-	death-associated protein	protein-coding
2238	chr16	53111499	53120242	+	0	NA	intron (NM_025134, intron 1 of 38)	MIRc|SINE|MIR	26925	NM_025134	80205	Hs.622347	XM_005256168	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
1878	chr10	67153908	67155969	+	0	NA	Intergenic	Intergenic	569653	NR_001446	305	Hs.591361	NR_001446		ANXA2P3	ANX2L3|ANX2P3|LIP2|LPC2C	annexin A2 pseudogene 3	pseudo
4807	chr6	136847173	136847857	+	0	NA	promoter-TSS (NM_001198608)	promoter-TSS (NM_001198608)	-164	NM_001198609	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
2388	chr19	43767750	43773230	+	0	NA	intron (NM_002784, intron 2 of 5)	intron (NM_002784, intron 2 of 5)	3192	NM_002784	5678	Hs.502092	XM_005259074	ENSG00000183668	PSG9	PS34|PSBG-11|PSBG-9|PSG11|PSGII	pregnancy specific beta-1-glycoprotein 9	protein-coding
2938	chr5	95125067	95131949	+	0	NA	intron (NM_014899, intron 11 of 11)	AluSc8|SINE|Alu	30069	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
1690	chr1	41574028	41576469	+	0	NA	intron (NM_001172222, intron 2 of 8)	intron (NM_001172222, intron 2 of 8)	50357	NM_001172222	22955	Hs.571874	XM_005270637	ENSG00000010803	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
2964	chr5	17400572	17403270	+	0	NA	Intergenic	LTR23|LTR|ERV1	-14502	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
3915	chr15	33140967	33146376	+	0	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-132605	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
4516	chr4	129481512	129483025	+	0	NA	Intergenic	Intergenic	-248510	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
617	chr18	45664012	45666824	+	0	NA	Intergenic	Intergenic	-1738	NM_001039360	201501	Hs.732162	XM_005258225	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
4136	chr2	45967	47308	+	0	NA	promoter-TSS (NM_001077710)	promoter-TSS (NM_001077710)	-49	NM_001077710	642273	Hs.8379	XM_005264697		FAM110C	-	family with sequence similarity 110, member C	protein-coding
3943	chr15	64734944	64738324	+	0	NA	intron (NM_016213, intron 11 of 12)	intron (NM_016213, intron 11 of 12)	-54985	NM_015042	23060	Hs.696256	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
3801	chr12	54051013	54055326	+	0	NA	Intergenic	Intergenic	16940	NM_005176	517	Hs.524464	NM_001002031	ENSG00000135390	ATP5G2	ATP5A	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)	protein-coding
4061	chr17	76139488	76142696	+	0	NA	Intergenic	Intergenic	-1342	NM_001163075	100141515	Hs.633034	XM_005256911	ENSG00000187997	C17orf99	-	chromosome 17 open reading frame 99	protein-coding
2918	chr4	170034984	170038253	+	0	NA	intron (NM_020870, intron 10 of 11)	MER1A|DNA|hAT-Charlie	-105150	NM_032783	84869	Hs.659311	XM_005263315	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
3821	chr12	88212520	88216098	+	0	NA	Intergenic	Intergenic	-35821	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
1594	chrX	107541252	107543575	+	0	NA	intron (NM_033641, intron 3 of 44)	intron (NM_033641, intron 3 of 44)	139247	NM_001287760	1288	Hs.145586	XM_005262073	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3	collagen, type IV, alpha 6	protein-coding
251	chr11	17549845	17557187	+	0	NA	intron (NM_153676, intron 2 of 26)	intron (NM_153676, intron 2 of 26)	12447	NM_153676	10083	Hs.502072	XM_005252725	ENSG00000006611	USH1C	AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst	Usher syndrome 1C (autosomal recessive, severe)	protein-coding
4986	chr9	123546352	123547669	+	0	NA	intron (NM_012164, intron 3 of 7)	AluSx|SINE|Alu	8730	NM_012164	26190	Hs.494985	XM_005251908	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
369	chr12	74758037	74759738	+	0	NA	Intergenic	L1PA17|LINE|L1	-72476	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	RP11-81H3.2	-	uncharacterized LOC100507377	ncRNA
1548	chrX	87424020	87426806	+	0	NA	Intergenic	Intergenic	-576813	NM_033048	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	CPX chromosome region, candidate 1	protein-coding
3900	chr14	74128743	74131237	+	0	NA	intron (NM_001201366, intron 5 of 8)	AluSx1|SINE|Alu	18412	NM_001201366	83544	Hs.271270	NM_001201366	ENSG00000119661	DNAL1	C14orf168|CILD16	dynein, axonemal, light chain 1	protein-coding
4053	chr17	63014232	63015422	+	0	NA	intron (NM_006572, intron 2 of 3)	intron (NM_006572, intron 2 of 3)	37065	NM_001282425	10672	Hs.515018	XM_005256956	ENSG00000120063	GNA13	G13	guanine nucleotide binding protein (G protein), alpha 13	protein-coding
1823	chr10	47756783	47760239	+	0	NA	intron (NM_001278923, intron 7 of 9)	intron (NM_001278923, intron 7 of 9)	11591	NM_001630	244	Hs.705389	XM_005272404	ENSG00000186807	ANXA8L2	ANXA8|bA145E20.2	annexin A8-like 2	protein-coding
2267	chr16	86623227	86625107	+	0	NA	Intergenic	MIR|SINE|MIR	12052	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
2537	chr2	175544687	175549166	+	0	NA	intron (NM_001077269, intron 1 of 7)	CpG	701	NM_001077269	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
887	chr22	31587898	31589996	+	0	NA	intron (NM_001135825, intron 3 of 4)	MIR3|SINE|MIR	-19303	NM_005569	3985	Hs.474596	XM_005261602	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
72	chr1	144280086	144281689	+	0	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	59886	NR_109754	728855	Hs.662922	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	ncRNA
3371	chr9	100833707	100837868	+	0	NA	intron (NM_018946, intron 2 of 5)	AluSg|SINE|Alu	16828	NM_018946	54187	Hs.665191	XM_005252053	ENSG00000095380	NANS	SAS	N-acetylneuraminic acid synthase	protein-coding
1496	chr9	72499080	72501710	+	0	NA	intron (NM_001010940, intron 4 of 5)	intron (NM_001010940, intron 4 of 5)	64664	NM_001010940	138255	Hs.444459	XM_005251705	ENSG00000204711	C9orf135	-	chromosome 9 open reading frame 135	protein-coding
1682	chr1	23075290	23081392	+	0	NA	intron (NM_004442, intron 1 of 15)	intron (NM_004442, intron 1 of 15)	32331	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	ncRNA
2781	chr3	108271774	108275119	+	0	NA	intron (NM_020890, intron 17 of 20)	intron (NM_020890, intron 17 of 20)	-25277	NM_014981	22989	Hs.731060	NM_014981	ENSG00000144821	MYH15	-	myosin, heavy chain 15	protein-coding
1108	chr4	154062806	154065896	+	0	NA	Intergenic	Intergenic	-9919	NM_001130067	23321	Hs.435711	XM_005262872	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
1014	chr4	41532921	41535654	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-80502	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
2282	chr17	81066025	81068945	+	0	NA	Intergenic	Intergenic	29918	NM_001004431	284207	Hs.378821	XM_005256349	ENSG00000176845	METRNL	-	meteorin, glial cell differentiation regulator-like	protein-coding
843	chr20	18564708	18566709	+	0	NA	Intergenic	MER21C|LTR|ERVL	-2848	NM_080820	92675	Hs.659442	XM_005260871	ENSG00000125821	DTD1	C20orf88|DUE-B|DUEB|HARS2|bA379J5.3|bA555E18.1|pqn-68	D-tyrosyl-tRNA deacylase 1	protein-coding
2760	chr3	71177508	71182044	+	0	NA	exon (NM_001244815, exon 1 of 16)	exon (NM_001244815, exon 1 of 16)	316	NM_001244815	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
2529	chr2	158638146	158644807	+	0	NA	intron (NM_001111067, intron 3 of 10)	intron (NM_001111067, intron 3 of 10)	90147	NM_001105	90	Hs.470316	XM_005246939	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor, type I	protein-coding
4677	chr5	143206372	143207363	+	0	NA	Intergenic	Intergenic	15141	NM_021182	57824	Hs.158320	NM_021182	ENSG00000158497	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
2315	chr17	73605038	73611601	+	0	NA	intron (NR_003587, intron 23 of 60)	intron (NR_003587, intron 23 of 60)	-21195	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
2257	chr16	69206780	69208775	+	0	NA	Intergenic	L1M5|LINE|L1	-13273	NM_006750	6645	Hs.461117	XM_005256120	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
514	chr15	64744615	64746965	+	0	NA	intron (NM_016213, intron 12 of 12)	intron (NM_016213, intron 12 of 12)	-45829	NM_015042	23060	Hs.696256	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
610	chr18	25783379	25785168	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-26828	NM_001792	1000	Hs.606106	XM_005258181	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
3973	chr15	98503739	98504568	+	0	NA	exon (NM_183376, exon 1 of 8)	exon (NM_183376, exon 1 of 8)	220	NM_183376	91947	Hs.6093	NM_183376	ENSG00000140450	ARRDC4	-	arrestin domain containing 4	protein-coding
2444	chr2	27514882	27517588	+	0	NA	intron (NM_187841, intron 1 of 8)	intron (NM_187841, intron 1 of 8)	10938	NM_032546	57159	Hs.516036	XM_005264435	ENSG00000138100	TRIM54	MURF|MURF-3|RNF30|muRF3	tripartite motif containing 54	protein-coding
725	chr2	72425632	72427095	+	0	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-51372	NM_019885	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
3921	chr15	30016986	30018814	+	0	NA	intron (NM_003257, intron 18 of 27)	intron (NM_003257, intron 18 of 27)	96806	NM_175610	7082	Hs.743990	XM_005254616	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
4088	chr18	47384013	47386095	+	0	NA	intron (NM_001080467, intron 29 of 39)	intron (NM_001080467, intron 29 of 39)	44661	NR_003003	677769		NR_003003		SCARNA17	U91	small Cajal body-specific RNA 17	ncRNA
4290	chr20	22773552	22778756	+	0	NA	Intergenic	Intergenic	-187999	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
1994	chr12	20119400	20121753	+	0	NA	Intergenic	Intergenic	-47043	NR_040098	100506393	Hs.658356	XR_242883	ENSG00000256287	RP11-664H17.1	-	uncharacterized LOC100506393	ncRNA
3252	chr7	80368893	80371847	+	0	NA	Intergenic	Intergenic	94608	NM_001127444	948	Hs.120949	XM_005250713	ENSG00000135218	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule (thrombospondin receptor)	protein-coding
3907	chr14	90376340	90379868	+	0	NA	intron (NM_001284267, intron 5 of 5)	intron (NM_001284267, intron 5 of 5)	42797	NM_001284269	90141	Hs.123232	XM_005268189	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
3857	chr13	31316913	31318799	+	0	NA	intron (NM_001204406, intron 2 of 5)	L2c|LINE|L2	8211	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
1136	chr5	4629467	4631282	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-143220	NR_104619	101929153	Hs.385526	XR_241727	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
4048	chr17	60896505	60898159	+	0	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-11590	NM_152598	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
4183	chr2	63961621	63962632	+	0	NA	Intergenic	Intergenic	-105972	NM_001001521	7360	Hs.516217	XM_005264536	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
1175	chr5	88716366	88717775	+	0	NA	Intergenic	Intergenic	-517148	NM_001193347	4208	Hs.649965	XM_005248508	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding
4011	chr16	86623623	86624713	+	0	NA	Intergenic	MIR|SINE|MIR	12053	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
1683	chr1	26020648	26023664	+	0	NA	intron (NM_001289010, intron 2 of 11)	intron (NM_001289010, intron 2 of 11)	78197	NM_020379	57134	Hs.197043	XM_005245945		MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase, alpha, class 1C, member 1	protein-coding
1326	chr6	89068327	89071829	+	0	NA	Intergenic	Intergenic	-194311	NM_001160258	1268	Hs.75110	XM_005248649	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
3714	chr11	8255472	8256761	+	0	NA	intron (NM_001270428, intron 1 of 3)	intron (NM_001270428, intron 1 of 3)	29309	NR_073006	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
1382	chr7	30292330	30295424	+	0	NA	Intergenic	AluYc|SINE|Alu	-30046	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
1452	chr8	98876866	98879236	+	0	NA	Intergenic	Intergenic	-3260	NM_030583	4147	Hs.189445	XM_005250919	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
2384	chr19	43524521	43528986	+	0	NA	intron (NM_001113410, intron 1 of 4)	intron (NM_001113410, intron 1 of 4)	3878	NM_002785	5680	Hs.741150	XM_005259080	ENSG00000243130	PSG11	PSBG-11|PSBG-13|PSG13|PSG14	pregnancy specific beta-1-glycoprotein 11	protein-coding
2637	chr20	31974449	31976197	+	0	NA	exon (NM_016408, exon 6 of 14)	exon (NM_016408, exon 6 of 14)	14052	NM_016082	51654	Hs.435952	XM_005260434	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
589	chr17	63179206	63181438	+	0	NA	intron (NM_003835, intron 9 of 18)	intron (NM_003835, intron 9 of 18)	46866	NM_001081955	8787	Hs.664380	NM_001081955	ENSG00000108370	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
1337	chr6	116876931	116880598	+	0	NA	intron (NM_001256888, intron 3 of 3)	intron (NM_001256888, intron 3 of 3)	-11991	NM_001139444	100128327	Hs.134795	NM_001139444	ENSG00000173626	TRAPPC3L	BET3L|bA259P20.2	trafficking protein particle complex 3-like	protein-coding
2098	chr13	33823895	33826248	+	0	NA	intron (NM_001243476, intron 5 of 17)	L2b|LINE|L2	-26620	NR_046693	100874241	Hs.662433	XR_245376	ENSG00000236581	STARD13-AS	STARD13-AS2	STARD13 antisense RNA	ncRNA
3101	chr6	11765021	11774068	+	0	NA	intron (NM_032744, intron 1 of 5)	intron (NM_032744, intron 1 of 5)	9736	NM_001143948	84830	Hs.126409	XM_005249453	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
3837	chr12	113668976	113670038	+	0	NA	intron (NM_001143819, intron 3 of 28)	intron (NM_001143819, intron 3 of 28)	10247	NM_001143819	53373	Hs.524763	XM_005253904	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
150	chr10	30045844	30048652	+	0	NA	Intergenic	Intergenic	-22518	NM_003174	6840	Hs.499209	XM_005252564	ENSG00000197321	SVIL	-	supervillin	protein-coding
3018	chr5	134705848	134709219	+	0	NA	intron (NM_001040158, intron 2 of 8)	intron (NM_001040158, intron 2 of 8)	27395	NM_138610	9555	Hs.599225	XM_005272130	ENSG00000113648	H2AFY	H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2	H2A histone family, member Y	protein-coding
245	chr11	4712477	4714252	+	0	NA	intron (NM_030774, intron 1 of 1)	intron (NM_030774, intron 1 of 1)	5712	NM_030774	81285	Hs.606330	NM_030774	ENSG00000167332	OR51E2	OR51E3P|OR52A2|PSGR	olfactory receptor, family 51, subfamily E, member 2	protein-coding
2511	chr2	113550493	113553071	+	0	NA	Intergenic	Intergenic	-8811	NM_000575	3552	Hs.1722	NM_000575		IL1A	IL-1A|IL1|IL1-ALPHA|IL1F1	interleukin 1, alpha	protein-coding
2604	chr20	56343542	56350598	+	0	NA	Intergenic	AluSq|SINE|Alu	-60478	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
4974	chr9	110310194	110311471	+	0	NA	Intergenic	Intergenic	-58785	NM_004235	9314	Hs.376206	XM_005252305	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
2546	chr2	201483023	201485414	+	0	NA	intron (NM_001159, intron 16 of 34)	intron (NM_001159, intron 16 of 34)	33487	NM_001159	316	Hs.406238	XM_005246506	ENSG00000138356	AOX1	AO|AOH1	aldehyde oxidase 1	protein-coding
4994	chr9	139752565	139754840	+	0	NA	exon (NM_206920, exon 25 of 27)	exon (NM_206920, exon 25 of 27)	6883	NM_206920	158056	Hs.376780	NM_206920	ENSG00000177943	MAMDC4	AEGP	MAM domain containing 4	protein-coding
2666	chr21	36627992	36630568	+	0	NA	Intergenic	Intergenic	-207685	NM_001754	861	Hs.612648	XM_005261067	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
3012	chr5	132383878	132385894	+	0	NA	Intergenic	Intergenic	-2776	NM_002154	3308	Hs.90093	NM_198431		HSPA4	APG-2|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock 70kDa protein 4	protein-coding
332	chr12	8839318	8842720	+	0	NA	Intergenic	Intergenic	-9499	NM_020734	57494	Hs.504670	XM_005253435	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK-like family member B	protein-coding
1099	chr4	143488095	143489914	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	278600	NM_003866	8821	Hs.531403	XM_005263322	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
3599	chr1	225060803	225062238	+	0	NA	Intergenic	Intergenic	-55836	NM_001145154	127602	Hs.133977	NM_001145154	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein, axonemal, heavy chain 14	protein-coding
1965	chr11	94509199	94510600	+	0	NA	intron (NM_130847, intron 1 of 12)	intron (NM_130847, intron 1 of 12)	8391	NM_130847	154810	Hs.503594	XM_005273798	ENSG00000166025	AMOTL1	JEAP	angiomotin like 1	protein-coding
4962	chr9	90400181	90401128	+	0	NA	intron (NR_027917, intron 4 of 4)	LTR5B|LTR|ERVK	12824	NR_027917	392360	Hs.690450	NM_001023564	ENSG00000188029	CTSL3P	CTSL3|HCTSL-s	cathepsin L family member 3, pseudogene	pseudo
34	chr1	21618607	21624132	+	0	NA	intron (NR_038404, intron 2 of 2)	intron (NR_038404, intron 2 of 2)	1586	NR_038404	100506801	Hs.663049	NR_038404	ENSG00000231105	RP5-1071N3.1	-	uncharacterized LOC100506801	ncRNA
745	chr2	86941345	86942611	+	0	NA	intron (NM_001198954, intron 1 of 7)	MIR3|SINE|MIR	-5436	NM_022780	64795	Hs.75277	NM_022780	ENSG00000153561	RMND5A	CTLH|GID2|GID2A|RMD5|p44CTLH	required for meiotic nuclear division 5 homolog A (S. cerevisiae)	protein-coding
3691	chr10	95135431	95138272	+	0	NA	intron (NM_013451, intron 22 of 53)	intron (NM_013451, intron 22 of 53)	105223	NM_013451	26509	Hs.602086	XM_005269693	ENSG00000138119	MYOF	FER1L3	myoferlin	protein-coding
2656	chr21	44593730	44599690	+	0	NA	Intergenic	MIR3|SINE|MIR	7569	NM_000394	1409	Hs.184085	XM_005261093	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
3650	chr10	19926612	19928235	+	0	NA	intron (NM_001142308, intron 36 of 39)	intron (NM_001142308, intron 36 of 39)	-177949	NM_001282736	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
2082	chr12	122523274	122530680	+	0	NA	intron (NM_014938, intron 1 of 16)	AluJo|SINE|Alu	10325	NM_014938	22877	Hs.731847	NM_014938		MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
1410	chr7	44453300	44456078	+	0	NA	intron (NM_015332, intron 3 of 5)	intron (NM_015332, intron 3 of 5)	75696	NM_015332	23386	Hs.488171	XM_005249691		NUDCD3	NudCL	NudC domain containing 3	protein-coding
2613	chr20	8135413	8138504	+	0	NA	intron (NM_182734, intron 2 of 32)	LTR16C|LTR|ERVL	24046	NM_015192	23236	Hs.431173	XM_005260681	ENSG00000182621	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
3056	chr6	37206086	37214481	+	0	NA	intron (NM_145316, intron 1 of 3)	intron (NM_145316, intron 1 of 3)	15130	NM_145316	221468	Hs.520101	XM_005248907	ENSG00000172738	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
2693	chr22	27282250	27284873	+	0	NA	Intergenic	Intergenic	230115	NR_033320	440823	Hs.517502	NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2	myocardial infarction associated transcript (non-protein coding)	ncRNA
3789	chr12	20784064	20785188	+	0	NA	intron (NM_000921, intron 6 of 15)	intron (NM_000921, intron 6 of 15)	59828	NM_001244683	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
4449	chr3	96554732	96556097	+	0	NA	intron (NM_001080448, intron 1 of 17)	intron (NM_001080448, intron 1 of 17)	21989	NM_001278301	285220	Hs.653244	NM_001080448	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
1434	chr7	131528296	131529501	+	0	NA	Intergenic	Intergenic	-287522	NM_001018111	5420	Hs.744213	NM_001018111	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
4182	chr2	63925334	63927004	+	0	NA	Intergenic	Intergenic	109884	NM_001199112	4190	Hs.526521	XM_005264320	ENSG00000014641	MDH1	HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1, NAD (soluble)	protein-coding
2713	chr3	109110058	109117988	+	0	NA	Intergenic	Intergenic	-14814	NR_109842	401082	Hs.477089	NM_001145553		FLJ25363	RP11-702L6.4	uncharacterized LOC401082	ncRNA
1547	chr9	128311852	128313922	+	0	NA	intron (NM_001006617, intron 6 of 11)	intron (NM_001006617, intron 6 of 11)	156626	NM_001006619	79109	Hs.495138	XM_005252203	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
2471	chr2	63967308	63970021	+	0	NA	Intergenic	Intergenic	-99434	NM_001001521	7360	Hs.516217	XM_005264536	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
3457	chr1	201243641	201245869	+	0	NA	Intergenic	Intergenic	-7825	NM_001005337	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)	protein-coding
1045	chr4	41287893	41290431	+	0	NA	Intergenic	Intergenic	30264	NM_004181	7345	Hs.518731	XM_005248124	ENSG00000154277	UCHL1	HEL-117|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|Uch-L1	ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	protein-coding
1619	chrY	26534548	26537012	+	0	NA	Intergenic	Intergenic	-95699	NR_001526	252949	Hs.522869	NR_001526	ENSG00000228240	TTTY17A	NCRNA00140|TTTY17	testis-specific transcript, Y-linked 17A (non-protein coding)	ncRNA
4265	chr2	234576127	234581041	+	0	NA	intron (NM_019075, intron 1 of 4)	AluSx3|SINE|Alu	-1960	NM_021027	54600	Hs.554822	NM_021027	ENSG00000241119	UGT1A9	HLUGP4|LUGP4|UDPGT|UDPGT 1-9|UGT-1I|UGT1-09|UGT1-9|UGT1.9|UGT1AI|UGT1I	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding
1069	chr4	41662479	41663756	+	0	NA	intron (NM_001112720, intron 7 of 19)	intron (NM_001112720, intron 7 of 19)	48328	NM_001112720	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
1224	chr5	157480958	157482992	+	0	NA	Intergenic	MER125|DNA|DNA	-195792	NM_001195555	9685	Hs.644000	XM_005266013	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
368	chr12	73546427	73547775	+	0	NA	Intergenic	L1PA2|LINE|L1	-5869	NR_110130	101928137	Hs.694666	XR_246006	ENSG00000258123	RP11-314D7.2	-	uncharacterized LOC101928137	ncRNA
3078	chr6	911659	914771	+	0	NA	Intergenic	Intergenic	188352	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
4007	chr16	79405138	79407302	+	0	NA	Intergenic	Intergenic	228402	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
4705	chr6	22036218	22036844	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	110891	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
611	chr18	26315171	26317250	+	0	NA	Intergenic	Intergenic	-558765	NM_001792	1000	Hs.606106	XM_005258181	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
1849	chr10	12621034	12623325	+	0	NA	intron (NM_020397, intron 2 of 9)	intron (NM_020397, intron 2 of 9)	1427	NR_039700	100616151		NR_039700		MIR4480	-	microRNA 4480	ncRNA
849	chr20	22696524	22698904	+	0	NA	Intergenic	Intergenic	-109559	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
4680	chr5	145154931	145157470	+	0	NA	intron (NM_205846, intron 5 of 6)	Tigger7|DNA|TcMar-Tigger	58732	NM_138492	153768	Hs.314261	NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
492	chr15	39482825	39485609	+	0	NA	Intergenic	Intergenic	-58668	NM_207445	400360	Hs.376109	NM_207445	ENSG00000175746	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
2740	chr3	36718423	36723115	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	60583	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
208	chr10	93882369	93886483	+	0	NA	intron (NM_001178137, intron 6 of 9)	intron (NM_001178137, intron 6 of 9)	118610	NM_001178137	22849	Hs.701732	XM_005269630	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
2271	chr17	20103442	20123186	+	0	NA	intron (NM_001033554, intron 2 of 5)	intron (NM_001033554, intron 2 of 5)	54007	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
3225	chr7	7214653	7219891	+	0	NA	Intergenic	Intergenic	-4974	NM_020156	56913	Hs.239666	XM_005249812	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding
292	chr11	111812045	111816631	+	0	NA	intron (NM_001037954, intron 1 of 19)	AluSc8|SINE|Alu	6411	NM_001037954	85458	Hs.655626	XM_005277726	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
2773	chr3	99764635	99767731	+	0	NA	intron (NM_001042459, intron 1 of 4)	intron (NM_001042459, intron 1 of 4)	-49124	NR_031662	100313938		NR_031662	ENSG00000221369	MIR548G	MIRN548G|hsa-mir-548g	microRNA 548g	ncRNA
2445	chr2	28356127	28358278	+	0	NA	intron (NM_001261840, intron 7 of 11)	intron (NM_001261840, intron 7 of 11)	137968	NR_036230	100422965		NR_036230		MIR4263	-	microRNA 4263	ncRNA
4039	chr17	39947183	39951089	+	0	NA	Intergenic	Intergenic	-6172	NM_021991	3728	Hs.514174	XM_005257313	ENSG00000173801	JUP	ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB	junction plakoglobin	protein-coding
291	chr11	111780203	111786313	+	0	NA	promoter-TSS (NM_001885)	promoter-TSS (NM_001885)	-202	NM_001541	3316	Hs.709660	NM_001541		HSPB2	HSP27|Hs.78846|LOH11CR1K|MKBP	heat shock 27kDa protein 2	protein-coding
3071	chr6	136863520	136872283	+	0	NA	intron (NM_001198617, intron 1 of 15)	intron (NM_001198617, intron 1 of 15)	4056	NM_001198617	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
3703	chr10	116266755	116268167	+	0	NA	intron (NM_001003407, intron 6 of 21)	intron (NM_001003407, intron 6 of 21)	19224	NM_006720	3983	Hs.593868	XM_005269818	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
114	chr1	185542805	185544502	+	0	NA	Intergenic	L2a|LINE|L2	-160030	NM_031935	83872	Hs.58877	NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
3272	chr7	110173316	110175787	+	0	NA	Intergenic	MIR3|SINE|MIR	-556511	NM_001099658	54674	Hs.3781	NM_001099658	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
1939	chr11	19972423	19976137	+	0	NA	intron (NM_001244963, intron 11 of 39)	intron (NM_001244963, intron 11 of 39)	-69822	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
4879	chr7	110161940	110163984	+	0	NA	Intergenic	Intergenic	-562692	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	eukaryotic translation initiation factor 3, subunit I pseudogene 1	pseudo
4894	chr7	137665571	137666883	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	20620	NM_194071	64764	Hs.490273	XM_005250541	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3-like 2	protein-coding
73	chr1	144460294	144461815	+	0	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	60915	NR_024584	728875	Hs.662922	NR_024584	ENSG00000236943	RP11-640M9.1	-	uncharacterized LOC728875	ncRNA
67	chr1	117703022	117707159	+	0	NA	intron (NR_045603, intron 2 of 5)	intron (NR_045603, intron 2 of 5)	-40679	NM_025188	80263	Hs.301526	XR_246297	ENSG00000134253	TRIM45	RNF99	tripartite motif containing 45	protein-coding
3335	chr9	124043081	124045989	+	0	NA	non-coding (NR_103560, exon 1 of 1)	non-coding (NR_103560, exon 1 of 1)	3273	NR_103560	57000	Hs.522373	NR_103560	ENSG00000235865	GSN-AS1	C9orf31|MOST2	GSN antisense RNA 1	ncRNA
3636	chr10	120765459	120767515	+	0	NA	Intergenic	Intergenic	-22741	NM_199461	340719	Hs.591918	NM_001009553	ENSG00000188613	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
241	chr11	4657500	4659213	+	0	NA	Intergenic	Intergenic	-2589	NM_001004751	390038	Hs.553728	NM_001004751	ENSG00000197428	OR51D1	OR11-14|OR51D1Q	olfactory receptor, family 51, subfamily D, member 1	protein-coding
2561	chr2	228083440	228085698	+	0	NA	intron (NM_000091, intron 1 of 51)	intron (NM_000091, intron 1 of 51)	55288	NM_000091	1285	Hs.570065	XM_005246275	ENSG00000169031	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
3133	chr6	47374347	47376583	+	0	NA	Intergenic	Intergenic	-70060	NM_012120	23607	Hs.485518	XM_005248976	ENSG00000198087	CD2AP	CMS	CD2-associated protein	protein-coding
327	chr12	76659765	76661492	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	81594	NM_024685	79738	Hs.96322	NM_024685	ENSG00000179941	BBS10	C12orf58	Bardet-Biedl syndrome 10	protein-coding
4697	chr5	173836724	173842049	+	0	NA	Intergenic	Intergenic	-312189	NM_002449	4488	Hs.89404	NM_002449	ENSG00000120149	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
1970	chr11	117703100	117705507	+	0	NA	intron (NM_001243598, intron 6 of 9)	intron (NM_001243598, intron 6 of 9)	-5496	NM_021603	486	Hs.731865	XM_005271570	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
4125	chr2	43383865	43388706	+	0	NA	Intergenic	Intergenic	67460	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
2391	chr19	55580101	55583652	+	0	NA	promoter-TSS (NM_138412)	promoter-TSS (NM_138412)	-962	NM_138412	112724	Hs.731615	XM_005258473	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13 (all-trans/9-cis)	protein-coding
4559	chr4	90042778	90045881	+	0	NA	Intergenic	Intergenic	10361	NM_145715	166815	Hs.58924	XM_005262789	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
1281	chr6	21915616	21917280	+	0	NA	intron (NR_015410, intron 5 of 11)	intron (NR_015410, intron 5 of 11)	230974	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	RP1-67M12.2	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
1864	chr10	29393021	29395711	+	0	NA	Intergenic	Intergenic	-183624	NM_032517	84569	Hs.558572	XM_005252627	ENSG00000120563	LYZL1	KAAG648|LYC2|PRO1278|bA534G20.1	lysozyme-like 1	protein-coding
3214	chr7	116209830	116212899	+	0	NA	Intergenic	Intergenic	44952	NM_001172897	857	Hs.74034	NM_001172895	ENSG00000105974	CAV1	BSCL3|CGL3|MSTP085|PPH3|VIP21	caveolin 1, caveolae protein, 22kDa	protein-coding
4554	chr4	84775529	84777155	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	318872	NM_032717	84803	Hs.99196	XM_005263314	ENSG00000138678	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
4765	chr6	32152687	32154603	+	0	NA	3' UTR (NM_002586, exon 9 of 9).7	3' UTR (NM_002586, exon 9 of 9).7	-1546	NM_001136	177	Hs.534342	NM_001136	ENSG00000204305	AGER	RAGE	advanced glycosylation end product-specific receptor	protein-coding
3675	chr10	73757983	73759788	+	0	NA	intron (NM_004273, intron 1 of 2)	intron (NM_004273, intron 1 of 2)	34765	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
3491	chr1	41574143	41576239	+	0	NA	intron (NM_001172222, intron 2 of 8)	intron (NM_001172222, intron 2 of 8)	50414	NM_001172222	22955	Hs.571874	XM_005270637	ENSG00000010803	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
1603	chrX	132628835	132630766	+	0	NA	Intergenic	Intergenic	-80595	NM_001448	2239	Hs.58367	XM_005262398		GPC4	K-glypican	glypican 4	protein-coding
1881	chr10	71107369	71110322	+	0	NA	intron (NM_033498, intron 5 of 20)	intron (NM_033498, intron 5 of 20)	30242	NM_000188	3098	Hs.370365	XM_005269735	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1	hexokinase 1	protein-coding
4403	chr3	123371509	123372823	+	0	NA	intron (NM_053025, intron 24 of 33)	intron (NM_053025, intron 24 of 33)	-32636	NM_053032	4638	Hs.477375	XM_005247492	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
3952	chr15	74280469	74282649	+	0	NA	exon (NM_004809, exon 3 of 7)	exon (NM_004809, exon 3 of 7)	3130	NM_001256675	9399	Hs.194816	XM_005254790	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
24	chr1	7399237	7404302	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-429560	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
2375	chr19	22006590	22009829	+	0	NA	intron (NM_001256653, intron 1 of 3)	LTR70|LTR|ERV1	10801	NM_001256654	7594	Hs.534365	XM_005260057	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
2759	chr3	71030375	71033031	+	0	NA	intron (NM_001244815, intron 9 of 15)	intron (NM_001244815, intron 9 of 15)	82371	NM_001244813	27086	Hs.59368	XM_005264729	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
2049	chr12	50501679	50505653	+	0	NA	3' UTR (NM_001257199, exon 8 of 8)	3' UTR (NM_001257199, exon 8 of 8)	-2098	NM_001257134	84987	Hs.388645	XM_005269199	ENSG00000178449	COX14	C12orf62	cytochrome c oxidase assembly homolog 14 (S. cerevisiae)	protein-coding
3321	chr9	2620037	2625522	+	0	NA	promoter-TSS (NR_015375)	promoter-TSS (NR_015375)	-406	NR_015375	401491	Hs.416043	NR_015375	ENSG00000236404	FLJ35024	RP11-125B21.2	uncharacterized LOC401491	ncRNA
104	chr1	183577033	183580046	+	0	NA	Intergenic	Intergenic	-18483	NM_001127651	4688	Hs.587558	XM_005245207	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
3197	chr6	166442025	166444204	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-41587	NR_026860	90632	Hs.31917	NR_026860	ENSG00000223414	LINC00473	C6orf176|bA142J11.1	long intergenic non-protein coding RNA 473	ncRNA
4241	chr2	175546398	175548372	+	0	NA	intron (NM_001077269, intron 1 of 7)	CpG	242	NM_001077269	7456	Hs.128067	XM_005246834	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
1558	chrX	14415863	14417624	+	0	NA	Intergenic	Intergenic	-130677	NM_001118885	2742	Hs.2700	NM_001118885	ENSG00000101958	GLRA2	GLR	glycine receptor, alpha 2	protein-coding
3370	chr9	96900919	96903808	+	0	NA	Intergenic	Intergenic	-35876	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
3493	chr1	44047568	44048798	+	0	NA	intron (NM_130440, intron 7 of 32)	intron (NM_130440, intron 7 of 32)	51636	NM_130440	5792	Hs.272062	XM_005271078	ENSG00000142949	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
4881	chr7	111156564	111158419	+	0	NA	intron (NM_032549, intron 2 of 5)	intron (NM_032549, intron 2 of 5)	44856	NM_032549	83943	Hs.731706	XM_005250629	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
4371	chr21	39714966	39716447	+	0	NA	Intergenic	Intergenic	71364	NM_170737	3772	Hs.411299	XM_005260975	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
1513	chr9	21293142	21295645	+	0	NA	Intergenic	Intergenic	10919	NM_002169	3442	Hs.37113	NM_002169	ENSG00000147873	IFNA5	IFN-alpha-5|IFN-alphaG|INA5|INFA5|leIF G	interferon, alpha 5	protein-coding
2175	chr15	23716633	23719338	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	89293	NR_039731	100616275		NR_039731	ENSG00000265673	MIR4508	-	microRNA 4508	ncRNA
1264	chr6	7701609	7704480	+	0	NA	Intergenic	Intergenic	-23967	NM_001718	654	Hs.285671	XM_005249305	ENSG00000153162	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
4468	chr3	111456594	111457264	+	0	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	5602	NM_001134437	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
159	chr10	6784427	6786061	+	0	NA	Intergenic	LTR71B|LTR|ERV1	35898	NR_108074	100652997	Hs.255086	XR_132575		LINC00706	-	long intergenic non-protein coding RNA 706	ncRNA
747	chr2	87545269	87547539	+	0	NA	Intergenic	Intergenic	-208570	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	AC133644.1|C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
4905	chr8	37548423	37550157	+	0	NA	Intergenic	Intergenic	-4011	NM_025069	80139	Hs.744591	NM_025069		ZNF703	ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
1633	chr1	75840419	75842346	+	0	NA	intron (NM_001130058, intron 3 of 23)	L1PA17|LINE|L1	235417	NM_001130058	204962	Hs.654821	XM_005270614	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44, member 5	protein-coding
47	chr1	61747527	61748969	+	0	NA	intron (NM_001134673, intron 3 of 10)	intron (NM_001134673, intron 3 of 10)	-29058	NR_104180	645030	Hs.632410	XR_246331		RP5-833A20.1	-	uncharacterized LOC645030	ncRNA
4540	chr4	41407724	41408266	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	45193	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
1942	chr11	20021256	20025562	+	0	NA	intron (NM_001244963, intron 12 of 39)	L1PA5|LINE|L1	-20693	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
1427	chr7	109589664	109591531	+	0	NA	Intergenic	LTR48|LTR|ERV1	9673	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	eukaryotic translation initiation factor 3, subunit I pseudogene 1	pseudo
4217	chr2	113551408	113552054	+	0	NA	Intergenic	Intergenic	-8760	NM_000575	3552	Hs.1722	NM_000575		IL1A	IL-1A|IL1|IL1-ALPHA|IL1F1	interleukin 1, alpha	protein-coding
1484	chr8	122778033	122779933	+	0	NA	Intergenic	Intergenic	-125353	NM_005328	3037	Hs.159226	XM_005250900		HAS2	-	hyaluronan synthase 2	protein-coding
1017	chr4	101219418	101221721	+	0	NA	Intergenic	Intergenic	-108914	NM_145244	115265	Hs.480378	XM_005262721	ENSG00000145358	DDIT4L	REDD2|Rtp801L	DNA-damage-inducible transcript 4-like	protein-coding
3619	chr1	249114788	249118045	+	0	NA	intron (NM_030645, intron 2 of 6)	intron (NM_030645, intron 2 of 6)	3738	NM_030645	80851	Hs.298573	XM_005270337	ENSG00000175137	SH3BP5L	-	SH3-binding domain protein 5-like	protein-coding
2042	chr12	47351018	47353932	+	0	NA	Intergenic	Intergenic	-120911	NM_001281429	91523	Hs.560100	XM_005269224	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
1057	chr4	41531576	41532906	+	0	NA	intron (NM_014988, intron 3 of 26)	intron (NM_014988, intron 3 of 26)	-82548	NM_001112719	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
538	chr16	9457750	9460875	+	0	NA	Intergenic	LTR83|LTR|ERVL	130538	NR_036166	100422920		NR_036166	ENSG00000265841	MIR548X	-	microRNA 548x	ncRNA
3748	chr11	119991946	119993628	+	0	NA	intron (NM_012101, intron 5 of 8)	intron (NM_012101, intron 5 of 8)	16076	NM_012101	23650	Hs.504115	XM_005271487	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
4711	chr6	56554924	56558829	+	0	NA	intron (NM_183380, intron 5 of 93)	intron (NM_183380, intron 5 of 93)	-49182	NM_001723	667	Hs.735651	XM_005249310	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
521	chr15	76867735	76870571	+	0	NA	intron (NM_001145923, intron 22 of 31)	L1MA3|LINE|L1	240006	NM_145805	64843	Hs.444677	XR_243124	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
1923	chr11	1586918	1596921	+	0	NA	intron (NM_004420, intron 1 of 6)	intron (NM_004420, intron 1 of 6)	1231	NM_004420	1850	Hs.41688	NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
162	chr10	14790042	14792238	+	0	NA	intron (NM_001282695, intron 1 of 5)	intron (NM_001282695, intron 1 of 5)	25756	NM_031453	83641	Hs.446315	XM_005252614	ENSG00000065809	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
433	chr13	76588088	76589840	+	0	NA	Intergenic	Intergenic	143790	NM_001257995	729420	Hs.586820	NM_001257995	ENSG00000178734	C13orf45	-	chromosome 13 open reading frame 45	protein-coding
880	chr21	40321877	40324112	+	0	NA	Intergenic	Intergenic	26706	NR_109962	101928435	Hs.385528	XR_244312	ENSG00000232837	AF064858.7	-	uncharacterized LOC101928435	ncRNA
3461	chr1	207928469	207929878	+	0	NA	intron (NM_002389, intron 1 of 13)	intron (NM_002389, intron 1 of 13)	3790	NM_172353	4179	Hs.510402	NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
1912	chr10	119220186	119222450	+	0	NA	Intergenic	Intergenic	-80638	NM_004098	2018	Hs.202095	NM_001165924	ENSG00000170370	EMX2	-	empty spiracles homeobox 2	protein-coding
2164	chr15	69859442	69861948	+	0	NA	intron (NR_026979, intron 4 of 4)	MIRb|SINE|MIR	6636	NR_026979	145837	Hs.737088	XR_243079		RP11-279F6.1	-	uncharacterized LOC145837	ncRNA
786	chr2	216564738	216566483	+	0	NA	intron (NR_037195, intron 5 of 9)	intron (NR_037195, intron 5 of 9)	142649	NR_037195	646324	Hs.655713	XR_241315	ENSG00000235770	LINC00607	AC122136.1	long intergenic non-protein coding RNA 607	ncRNA
986	chr3	159879691	159882192	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	43938	NR_108088	101928376	Hs.565865	XR_241609	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
3293	chr8	40203684	40209333	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	195521	NM_020130	56892	Hs.745031	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
1008	chr4	23935686	23937487	+	0	NA	Intergenic	Intergenic	-44886	NM_013261	10891	Hs.527078	XM_005248130	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
4530	chr4	7821365	7822624	+	0	NA	intron (NM_198595, intron 6 of 16)	L2a|LINE|L2	66177	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
4148	chr2	25840411	25841788	+	0	NA	intron (NM_001256303, intron 4 of 19)	intron (NM_001256303, intron 4 of 19)	31992	NM_001256308	1838	Hs.307720	XM_005264181	ENSG00000138101	DTNB	-	dystrobrevin, beta	protein-coding
3022	chr5	139700988	139705577	+	0	NA	Intergenic	Intergenic	-20593	NM_002622	5201	Hs.483564	XM_005268465	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
201	chr10	88169923	88172598	+	0	NA	Intergenic	Intergenic	-45010	NM_017551	2894	Hs.530653	NM_017551	ENSG00000182771	GRID1	GluD1	glutamate receptor, ionotropic, delta 1	protein-coding
4082	chr18	46148949	46150097	+	0	NA	intron (NM_014772, intron 2 of 11)	intron (NM_014772, intron 2 of 11)	-47448	NR_039897	100616366		NR_039897		MIR4743	-	microRNA 4743	ncRNA
4297	chr20	56261412	56290538	+	0	NA	intron (NM_199171, intron 1 of 3)	AluSx|SINE|Alu	9056	NM_020182	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
1401	chr7	31503465	31505218	+	0	NA	Intergenic	L2|LINE|L2	-49344	NM_001257967	223075	Hs.224269	XM_005249661	ENSG00000180347	CCDC129	-	coiled-coil domain containing 129	protein-coding
719	chr2	67876239	67878647	+	0	NA	Intergenic	Intergenic	175251	NR_110271	101927701	Hs.348697	XR_245019	ENSG00000237013	AC010987.6	-	uncharacterized LOC101927701	ncRNA
4645	chr5	95177273	95178340	+	0	NA	Intergenic	Intergenic	-10130	NR_026936	202299	Hs.8373	NM_175616	ENSG00000236882	C5orf27	FIS	chromosome 5 open reading frame 27	ncRNA
4305	chr20	3527377	3530041	+	0	NA	intron (NM_139321, intron 5 of 28)	intron (NM_139321, intron 5 of 28)	77044	NM_001207047	8455	Hs.276252	XM_005260860	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
1529	chr9	78065142	78067233	+	0	NA	Intergenic	L2c|LINE|L2	272557	NR_031679	100302287		NR_031679		MIR548H3	MIR548H-3|MIRN548H3|hsa-mir-548h-3	microRNA 548h-3	ncRNA
4289	chr20	22748563	22758134	+	0	NA	Intergenic	Intergenic	-165193	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
902	chr3	33831254	33834464	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-7204	NM_013374	10015	Hs.475896	NM_001162429	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
827	chr20	7069781	7073019	+	0	NA	Intergenic	Intergenic	-280855	NR_107029	102465865		NR_107029		MIR8062	hsa-mir-8062	microRNA mir-8062	ncRNA
266	chr11	45279547	45283697	+	0	NA	intron (NM_001247987, intron 2 of 7)	intron (NM_001247987, intron 2 of 7)	26262	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
1742	chr1	171403190	171404948	+	0	NA	Intergenic	AluSz6|SINE|Alu	-50597	NM_015172	23215	Hs.494614	XM_005245015	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline-rich coiled-coil 2C	protein-coding
1353	chr6	136749006	136751551	+	0	NA	intron (NM_001198617, intron 1 of 15)	MIRb|SINE|MIR	37735	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
3128	chr6	41813145	41815596	+	0	NA	intron (NM_018561, intron 3 of 6)	L1MB2|LINE|L1	25005	NM_001286554	25862	Hs.665742	XM_005248991	ENSG00000164663	USP49	-	ubiquitin specific peptidase 49	protein-coding
2585	chr20	3291588	3297982	+	0	NA	intron (NM_001009984, intron 20 of 36)	MLT1E2-int|LTR|ERVL-MaLR	-74898	NM_001174089	83959	Hs.105607	XM_005260856	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	solute carrier family 4, sodium borate transporter, member 11	protein-coding
4404	chr3	157220681	157221832	+	0	NA	promoter-TSS (NM_001167911)	promoter-TSS (NM_001167911)	-120	NM_001167912	79674	Hs.658046	XM_005247765	ENSG00000197415	VEPH1	MELT|VEPH	ventricular zone expressed PH domain-containing 1	protein-coding
1624	chr1	21585774	21594119	+	0	NA	intron (NM_001113347, intron 2 of 16)	AluSc|SINE|Alu	16237	NM_001113347	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
4864	chr7	90224862	90226339	+	0	NA	promoter-TSS (NM_001287135)	promoter-TSS (NM_001287135)	-76	NM_001287135	5218	Hs.430742	XM_005250434	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin-dependent kinase 14	protein-coding
4440	chr3	69914561	69919218	+	0	NA	intron (NM_198177, intron 1 of 9)	intron (NM_198177, intron 1 of 9)	1514	NM_198177	4286	Hs.618266	XM_005264754	ENSG00000187098	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
2892	chr4	109683183	109684687	+	0	NA	intron (NM_031279, intron 1 of 12)	CpG	300	NM_001146627	64850	Hs.106576	NM_001146590	ENSG00000164089	ETNPPL	AGXT2L1	ethanolamine-phosphate phospho-lyase	protein-coding
1695	chr1	45166015	45167955	+	0	NA	intron (NM_001145636, intron 5 of 11)	intron (NM_001145636, intron 5 of 11)	26591	NM_001145636	339541	Hs.173679	XM_005270804	ENSG00000198520	C1orf228	NCRNA00082|p40	chromosome 1 open reading frame 228	protein-coding
97	chr1	173238068	173239994	+	0	NA	intron (NR_037845, intron 2 of 2)	L2|LINE|L2	-62560	NM_003326	7292	Hs.181097	XM_005245475	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TXGP1	tumor necrosis factor (ligand) superfamily, member 4	protein-coding
2378	chr19	35737796	35742230	+	0	NA	exon (NM_205834, exon 1 of 10)	exon (NM_205834, exon 1 of 10)	454	NM_205834	51599	Hs.466507	XM_005258980	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
2983	chr5	81652220	81654468	+	0	NA	Intergenic	Intergenic	52178	NM_001017971	92270	Hs.729805	NM_001017971	ENSG00000205464	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
3645	chr10	14783697	14785829	+	0	NA	intron (NM_001282695, intron 1 of 5)	L2c|LINE|L2	32133	NM_031453	83641	Hs.446315	XM_005252614	ENSG00000065809	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
668	chr2	221675175	221677864	+	0	NA	Intergenic	Intergenic	760491	NM_004438	2043	Hs.371218	XM_005246374	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
774	chr2	197264275	197265868	+	0	NA	intron (NM_020760, intron 2 of 28)	intron (NM_020760, intron 2 of 28)	140323	NR_110226	101927482	Hs.191841	XR_241372	ENSG00000229056	AC020571.3	-	uncharacterized LOC101927482	ncRNA
4306	chr20	4021950	4023123	+	0	NA	Intergenic	Intergenic	-26320	NM_001134338	11237	Hs.589884	NM_001134337	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
910	chr3	183008567	183010354	+	0	NA	intron (NM_015078, intron 13 of 29)	intron (NM_015078, intron 13 of 29)	38428	NM_032047	84002	Hs.718506	XM_005247823	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
3463	chr1	225951039	225952368	+	0	NA	Intergenic	Intergenic	-13812	NM_003133	6726	Hs.706900	NM_001130440	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9kDa	protein-coding
1341	chr6	124754942	124756537	+	0	NA	intron (NM_153355, intron 3 of 5)	intron (NM_153355, intron 3 of 5)	-527952	NM_001286398	154214	Hs.656715	XM_005266832	ENSG00000146373	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
693	chr2	30101294	30102767	+	0	NA	intron (NM_004304, intron 1 of 28)	intron (NM_004304, intron 1 of 28)	42447	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
2701	chr22	39634487	39641706	+	0	NA	intron (NM_002608, intron 1 of 6)	(CG)n|Simple_repeat|Simple_repeat	-1182	NM_033016	5155	Hs.1976	NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
4601	chr5	148699856	148701500	+	0	NA	intron (NM_001146337, intron 14 of 17)	intron (NM_001146337, intron 14 of 17)	-24299	NM_152407	134266	Hs.511816	XM_005268374	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE-like 2, mitochondrial (E. coli)	protein-coding
4123	chr19	55580231	55581592	+	0	NA	promoter-TSS (NM_138412)	promoter-TSS (NM_138412)	3	NM_138412	112724	Hs.731615	XM_005258473	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13 (all-trans/9-cis)	protein-coding
2684	chr22	46413519	46416052	+	0	NA	Intergenic	L2c|LINE|L2	12289	NR_027240	730668	Hs.640071	NR_027240		LOC730668	-	dynein heavy chain -like pseudogene	pseudo
4799	chr6	117857292	117858098	+	0	NA	intron (NM_173674, intron 6 of 14)	intron (NM_173674, intron 6 of 14)	53875	NM_173674	285761	Hs.658304	XM_005266941	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
3424	chrX	73459843	73464093	+	0	NA	intron (NR_028379, intron 5 of 6)	intron (NR_028379, intron 5 of 6)	-23515	NR_030620	100126317		NR_030620	ENSG00000212027	MIR374B	MIRN374B	microRNA 374b	ncRNA
893	chr22	28403690	28405999	+	0	NA	intron (NM_001145418, intron 14 of 22)	intron (NM_001145418, intron 14 of 22)	-88244	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	-	microRNA 3199-1	ncRNA
2309	chr17	63541018	63545150	+	0	NA	intron (NM_004655, intron 3 of 10)	intron (NM_004655, intron 3 of 10)	14656	NM_004655	8313	Hs.156527	XM_005257716	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
3979	chr16	1346015	1348003	+	0	NA	Intergenic	LTR10A|LTR|ERV1	-12145	NM_194260	7329	Hs.302903	XM_005255540	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
3959	chr15	79968115	79970020	+	0	NA	Intergenic	Intergenic	220272	NR_037654	10588	Hs.459049	NM_001199758		MTHFS	HsT19268	5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)	protein-coding
4348	chr20	45767858	45769821	+	0	NA	intron (NM_172110, intron 9 of 13)	intron (NM_172110, intron 9 of 13)	-26770	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
4414	chr3	17425910	17427349	+	0	NA	intron (NM_001134381, intron 9 of 23)	MIR|SINE|MIR	314883	NM_001134381	9779	Hs.475629	XM_005265611	ENSG00000131374	TBC1D5	-	TBC1 domain family, member 5	protein-coding
4859	chr7	50936242	50937706	+	0	NA	Intergenic	MIR|SINE|MIR	-75815	NM_001001555	2887	Hs.164060	XM_005271760	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
2558	chr2	219827441	219829920	+	0	NA	Intergenic	Intergenic	4330	NM_003936	8941	Hs.158460	NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding
4851	chr7	30508323	30509828	+	0	NA	intron (NM_006092, intron 1 of 13)	intron (NM_006092, intron 1 of 13)	9318	NM_006092	10392	Hs.405153	XM_005249568	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide-binding oligomerization domain containing 1	protein-coding
1085	chr4	88870049	88872749	+	0	NA	Intergenic	Intergenic	-25403	NM_001040060	6696	Hs.313	NM_000582	ENSG00000118785	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
755	chr2	104440339	104441494	+	0	NA	Intergenic	Intergenic	583874	NR_037885	100287010	Hs.694603	NR_037885		LOC100287010	-	uncharacterized LOC100287010	ncRNA
1714	chr1	111964654	111967063	+	0	NA	intron (NM_002557, intron 5 of 10)	intron (NM_002557, intron 5 of 10)	4541	NM_002557	5016	Hs.1154	XM_005270905	ENSG00000085465	OVGP1	CHIT5|EGP|MUC9|OGP	oviductal glycoprotein 1, 120kDa	protein-coding
3942	chr15	64363102	64364421	+	0	NA	TTS (NM_001014812)	TTS (NM_001014812)	22446	NM_032231	84191	Hs.439548	NM_001014812	ENSG00000166797	FAM96A	-	family with sequence similarity 96, member A	protein-coding
1403	chr7	34098889	34108102	+	0	NA	intron (NM_133468, intron 12 of 15)	intron (NM_133468, intron 12 of 15)	158972	NM_133468	168667	Hs.660998	XM_005249632	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
2268	chr16	87836798	87844599	+	0	NA	Intergenic	Intergenic	27568	NR_106833	102465464		NR_106833		MIR6775	hsa-mir-6775	microRNA mir-6775	ncRNA
1497	chr9	79526945	79528721	+	0	NA	Intergenic	Intergenic	-6830	NM_015225	158471	Hs.262857	XM_005251745	ENSG00000106772	PRUNE2	A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|RP11-58J3.2|bA214N16.3	prune homolog 2 (Drosophila)	protein-coding
497	chr15	71154061	71157038	+	0	NA	intron (NM_001284357, intron 1 of 16)	MER5A|DNA|hAT-Charlie	-8945	NM_197958	55323	Hs.416755	NM_001286679	ENSG00000166173	LARP6	ACHN	La ribonucleoprotein domain family, member 6	protein-coding
4236	chr2	161097220	161099296	+	0	NA	Intergenic	Intergenic	30148	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
4615	chr5	32772073	32773382	+	0	NA	intron (NM_000908, intron 3 of 7)	intron (NM_000908, intron 3 of 7)	61289	NM_001204375	4883	Hs.619466	XM_005248309	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
411	chr13	23239298	23240592	+	0	NA	Intergenic	Intergenic	232375	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	brain abundant, membrane attached signal protein 1 pseudogene 1	pseudo
169	chr10	20292754	20293745	+	0	NA	intron (NM_001282736, intron 2 of 12)	intron (NM_001282736, intron 2 of 12)	187877	NM_032812	84898	Hs.733859	XM_005252629	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
2579	chr20	46922957	46926507	+	0	NA	Intergenic	Intergenic	-63922	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	RP1-66N13.3	long intergenic non-protein coding RNA 494	ncRNA
398	chr12	119622752	119628411	+	0	NA	intron (NM_014365, intron 2 of 2)	intron (NM_014365, intron 2 of 2)	8986	NM_014365	26353	Hs.400095	NM_014365	ENSG00000152137	HSPB8	CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22	heat shock 22kDa protein 8	protein-coding
2016	chr12	124992749	125006796	+	0	NA	intron (NM_006312, intron 2 of 48)	AluSx|SINE|Alu	52238	NM_006312	9612	Hs.137510	XM_005253638	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
3182	chr6	147304474	147308030	+	0	NA	intron (NR_034115, intron 6 of 10)	intron (NR_034115, intron 6 of 10)	-181292	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
3934	chr15	55680645	55682197	+	0	NA	intron (NR_037923, intron 9 of 15)	intron (NR_037923, intron 9 of 15)	-16189	NR_030358	693213		NR_030358		MIR628	MIRN628|hsa-mir-628	microRNA 628	ncRNA
942	chr3	54915491	54917533	+	0	NA	intron (NM_018398, intron 21 of 37)	intron (NM_018398, intron 21 of 37)	18770	NR_046666	100874237	Hs.570583	NR_046666	ENSG00000243715	CACNA2D3-AS1	RP11-674P14.1	CACNA2D3 antisense RNA 1	ncRNA
955	chr3	99393110	99394283	+	0	NA	intron (NM_020351, intron 1 of 3)	intron (NM_020351, intron 1 of 3)	36256	NM_001850	1295	Hs.740617	XM_005247098	ENSG00000144810	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
1376	chr6	160450603	160452351	+	0	NA	intron (NM_000876, intron 7 of 47)	intron (NM_000876, intron 7 of 47)	-22781	NR_047511	100271873	Hs.742166	NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
1888	chr10	78915414	78917147	+	0	NA	intron (NM_001271518, intron 4 of 27)	LTR8A|LTR|ERV1	481297	NM_001271519	3778	Hs.144795	XM_005269773	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
3267	chr7	107734105	107737411	+	0	NA	exon (NM_007356, exon 12 of 34)	exon (NM_007356, exon 12 of 34)	35043	NM_007356	22798	Hs.62022	XM_005250232	ENSG00000091128	LAMB4	-	laminin, beta 4	protein-coding
4119	chr19	45090155	45096725	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-23500	NM_001205280	147710	Hs.512509	XM_005258540	ENSG00000216588	IGSF23	-	immunoglobulin superfamily, member 23	protein-coding
2369	chr19	46772631	46777843	+	0	NA	intron (NR_046936, intron 3 of 3)	ERV3-16A3_LTR|LTR|ERVL	-25066	NM_152795	64344	Hs.420830	XM_005259152	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding
2647	chr20	47154185	47156681	+	0	NA	Intergenic	Intergenic	166779	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	RP1-66N13.3	long intergenic non-protein coding RNA 494	ncRNA
190	chr10	73679529	73682833	+	0	NA	Intergenic	Intergenic	-42939	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
2816	chr3	159942233	159946278	+	0	NA	3' UTR (NM_001168214, exon 1 of 1)	3' UTR (NM_001168214, exon 1 of 1)	832	NM_001168214	401097	Hs.729755	NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
1808	chr1	236331722	236333550	+	0	NA	intron (NM_003272, intron 2 of 6)	intron (NM_003272, intron 2 of 6)	26804	NM_003272	7107	Hs.498160	XM_005273244	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
1739	chr1	169476238	169478976	+	0	NA	Intergenic	L4|LINE|RTE	-22399	NM_006996	10560	Hs.30246	XM_005244840	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding
601	chr18	6740658	6742438	+	0	NA	Intergenic	Intergenic	-92884	NM_001010000	79822	Hs.183114	XM_005258144	ENSG00000088756	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
822	chr20	3378790	3382320	+	0	NA	intron (NM_001009984, intron 1 of 36)	intron (NM_001009984, intron 1 of 36)	7754	NM_001009984	25943	Hs.516853	XM_005260684	ENSG00000088854	C20orf194	-	chromosome 20 open reading frame 194	protein-coding
2802	chr3	127797691	127804885	+	0	NA	intron (NM_003707, intron 10 of 10)	intron (NM_003707, intron 10 of 10)	30076	NM_013336	29927	Hs.518236	XM_005247404	ENSG00000058262	SEC61A1	HSEC61|SEC61|SEC61A	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding
231	chr11	39384120	39388098	+	0	NA	Intergenic	Intergenic	928571	NR_047674	57689	Hs.745123	XM_005253030	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
4700	chr5	175250742	175251789	+	0	NA	intron (NM_006650, intron 2 of 4)	Charlie19a|DNA|hAT-Charlie	27655	NM_006650	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
551	chr16	65691533	65694830	+	0	NA	Intergenic	Intergenic	-82978	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	RP11-256I9.1	long intergenic non-protein coding RNA 922	ncRNA
4720	chr6	912437	913803	+	0	NA	Intergenic	Intergenic	188447	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
504	chr15	38884459	38886800	+	0	NA	Intergenic	Intergenic	-28622	NM_001128602	10125	Hs.591127	XM_005254113	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
3753	chr11	123324235	123325791	+	0	NA	Intergenic	Intergenic	-71331	NM_020716	57476	Hs.732509	XM_005271619	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
2823	chr3	193828765	193832351	+	0	NA	Intergenic	Intergenic	-23373	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
3894	chr14	65148354	65149496	+	0	NA	Intergenic	Intergenic	-22268	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
3177	chr6	137112000	137115186	+	0	NA	promoter-TSS (NM_005923)	promoter-TSS (NM_005923)	63	NM_005923	4217	Hs.186486	XM_005266990	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
3387	chr9	123543908	123547912	+	0	NA	intron (NM_012164, intron 3 of 7)	MER102a|DNA|hAT-Charlie	9830	NM_012164	26190	Hs.494985	XM_005251908	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
4583	chr4	158954093	158955391	+	0	NA	Intergenic	Intergenic	138976	NM_016613	51313	Hs.567498	XM_005263054	ENSG00000164125	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
1966	chr11	110582014	110583860	+	0	NA	promoter-TSS (NM_001258415)	promoter-TSS (NM_001258415)	-164	NM_001258415	57569	Hs.6136	XM_005271628	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
1665	chr1	225948562	225953329	+	0	NA	Intergenic	AluSx|SINE|Alu	-14570	NM_003133	6726	Hs.706900	NM_001130440	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9kDa	protein-coding
1782	chr1	210405285	210408254	+	0	NA	intron (NM_019605, intron 1 of 3)	CpG	574	NM_019605	56256	Hs.600545	XM_005273193		SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
3873	chr14	54312653	54313520	+	0	NA	Intergenic	MamRep4096|DNA|hAT?	102116	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
2698	chr22	28121628	28124590	+	0	NA	Intergenic	Intergenic	74377	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
2252	chr16	57284907	57288578	+	0	NA	3' UTR (NM_012106, exon 6 of 6)	3' UTR (NM_012106, exon 6 of 6)	7704	NM_012106	23568	Hs.719024	XM_005255881	ENSG00000102931	ARL2BP	BART|BART1	ADP-ribosylation factor-like 2 binding protein	protein-coding
2506	chr2	103603916	103606997	+	0	NA	Intergenic	Intergenic	226966	NM_144632	130827	Hs.436203	XM_005263874	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
3403	chrX	38419953	38423181	+	0	NA	intron (NM_004615, intron 1 of 7)	intron (NM_004615, intron 1 of 7)	836	NM_004615	7102	Hs.441664	XM_005272646	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b	tetraspanin 7	protein-coding
792	chr2	218486481	218487721	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	134215	NR_026597	729582	Hs.572788	XR_241321	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
3122	chr6	31081549	31084858	+	0	NA	3' UTR (NM_001264, exon 2 of 2)	3' UTR (NM_001264, exon 2 of 2)	595	NM_014068	170679	Hs.310958	NM_014068	ENSG00000204540	PSORS1C1	C6orf16|SEEK1	psoriasis susceptibility 1 candidate 1	protein-coding
1248	chr6	136716522	136737196	+	0	NA	intron (NM_001198618, intron 3 of 17)	L2a|LINE|L2	61154	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
4727	chr6	4319785	4321829	+	0	NA	Intergenic	Intergenic	184501	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	RP3-400B16.1	-	uncharacterized LOC100507506	ncRNA
3368	chr9	90227018	90232299	+	0	NA	intron (NM_001288730, intron 3 of 25)	intron (NM_001288730, intron 3 of 25)	-111316	NM_001912	1514	Hs.731507	XM_005251716	ENSG00000135047	CTSL	CATL|CTSL1|MEP	cathepsin L	protein-coding
4205	chr2	97330419	97332175	+	0	NA	intron (NM_001113382, intron 13 of 51)	intron (NM_001113382, intron 13 of 51)	22723	NM_001113382	90342	Hs.534025	NM_001113382		FER1L5	-	fer-1-like 5 (C. elegans)	protein-coding
2401	chr2	20264882	20269623	+	0	NA	Intergenic	L1ME1|LINE|L1	-15463	NM_014713	9741	Hs.467807	XM_005262635	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
3994	chr16	57676674	57678262	+	0	NA	intron (NM_201524, intron 2 of 14)	intron (NM_201524, intron 2 of 14)	4261	NM_001145774	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
1516	chr9	26264658	26266494	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	198903	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
3733	chr11	47241121	47243319	+	0	NA	intron (NM_000107, intron 3 of 9)	intron (NM_000107, intron 3 of 9)	5727	NM_000107	1643	Hs.700338	XM_005252807	ENSG00000134574	DDB2	DDBB|UV-DDB2	damage-specific DNA binding protein 2, 48kDa	protein-coding
924	chr3	16489139	16491312	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	64997	NM_015150	23180	Hs.98910	XM_005264985	ENSG00000131378	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
2053	chr12	52728282	52731414	+	0	NA	Intergenic	L1M2|LINE|L1	-14666	NM_002282	3889	Hs.720768	XM_003846559	ENSG00000170523	KRT83	HB3|Hb-3|KRTHB3	keratin 83	protein-coding
2462	chr2	54765400	54768820	+	0	NA	intron (NM_003128, intron 2 of 35)	MLT1A0|LTR|ERVL-MaLR	10751	NR_002229	56969	Hs.732136	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
5010	chrX	76266424	76267391	+	0	NA	Intergenic	L1PA3|LINE|L1	-127122	NR_029909	494333		NR_029909		MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
4064	chr17	77964758	77968570	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-42008	NM_001271846	125058	Hs.369819	XM_005257049	ENSG00000167291	TBC1D16	-	TBC1 domain family, member 16	protein-coding
4775	chr6	46097040	46098352	+	0	NA	promoter-TSS (NM_014936)	promoter-TSS (NM_014936)	-5	NM_014936	22875	Hs.643497	NM_014936	ENSG00000001561	ENPP4	NPP4	ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	protein-coding
2301	chr17	55617593	55620901	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	203443	NM_001282544	101927581	Hs.540784	XM_005257905	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
4162	chr2	36672974	36674314	+	0	NA	intron (NM_016441, intron 4 of 16)	intron (NM_016441, intron 4 of 16)	90274	NM_016441	51232	Hs.699247	XM_005264357	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
2027	chr12	12952441	12958921	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-10599	NM_016355	51202	Hs.719938	NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding
2481	chr2	72371221	72378166	+	0	NA	intron (NM_019885, intron 1 of 5)	CpG	298	NM_001277742	56603	Hs.91546	XM_005264433	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
4904	chr8	22530236	22531540	+	0	NA	Intergenic	Intergenic	-4227	NM_018688	55909	Hs.433722	XM_005273573	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
172	chr10	20704123	20705487	+	0	NA	Intergenic	Intergenic	-136094	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	ncRNA
3922	chr15	31316068	31317396	+	0	NA	intron (NM_002420, intron 26 of 26)	intron (NM_002420, intron 26 of 26)	-32925	NM_017762	54893	Hs.30141	XM_005254506	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
4045	chr17	55618565	55620338	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	203239	NM_001282544	101927581	Hs.540784	XM_005257905	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
1366	chr6	144075290	144077720	+	0	NA	intron (NM_001100165, intron 4 of 11)	intron (NM_001100165, intron 4 of 11)	77403	NM_001100165	9749	Hs.102471	NM_001100164	ENSG00000112419	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
4252	chr2	217556692	217558104	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	2874	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
223	chr10	130402559	130404180	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-478901	NM_001145966	4288	Hs.689823	XM_005252683	ENSG00000148773	MKI67	KIA|MIB-1	marker of proliferation Ki-67	protein-coding
1255	chr6	168083157	168084597	+	0	NA	Intergenic	Intergenic	113662	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	ncRNA
1043	chr4	24420165	24421420	+	0	NA	Intergenic	Intergenic	101121	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
4999	chrX	64896492	64899899	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	10684	NM_002444	4478	Hs.87752	XM_005262269	ENSG00000147065	MSN	HEL70	moesin	protein-coding
2660	chr21	28214688	28219274	+	0	NA	exon (NM_006988, exon 1 of 9)	exon (NM_006988, exon 1 of 9)	747	NM_006988	9510	Hs.643357	NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif, 1	protein-coding
4571	chr4	139831728	139834085	+	0	NA	Intergenic	Intergenic	-104007	NM_012118	25819	Hs.656047	NM_012118	ENSG00000151014	CCRN4L	CCR4L|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
1852	chr10	15125637	15127504	+	0	NA	intron (NM_001039844, intron 1 of 3)	MER51A|LTR|ERV1	4205	NM_001039844	414149	Hs.723069	XM_005252453		ACBD7	bA455B2.2	acyl-CoA binding domain containing 7	protein-coding
3548	chr1	172417649	172420832	+	0	NA	intron (NM_139240, intron 3 of 6)	intron (NM_139240, intron 3 of 6)	-6010	NM_002642	5279	Hs.188456	NM_002642	ENSG00000135845	PIGC	GPI2	phosphatidylinositol glycan anchor biosynthesis, class C	protein-coding
639	chr19	29353616	29356800	+	0	NA	Intergenic	Intergenic	-100830	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
3449	chr1	44513499	44515440	+	0	NA	Intergenic	Intergenic	-17305	NM_001024845	6536	Hs.442590	XM_005271145	ENSG00000196517	SLC6A9	GLYT1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding
1505	chr9	444361	445945	+	0	NA	intron (NM_001193536, intron 42 of 46)	intron (NM_001193536, intron 42 of 46)	-25141	NM_001256876	23189	Hs.306764	XM_005251410	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
2248	chr16	50649115	50654612	+	0	NA	intron (NM_033119, intron 4 of 9)	MER58A|DNA|hAT-Charlie	63401	NM_153337	124460	Hs.715778	NM_001144972	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
4746	chr6	19837408	19839553	+	0	NA	intron (NM_001546, intron 1 of 2)	CpG	879	NM_001546	3400	Hs.663469	XM_005249076		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
4957	chr9	85833745	85835218	+	0	NA	Intergenic	Intergenic	47721	NM_001244962	257019	Hs.743606	XM_005251882	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4844	chr7	28448531	28450190	+	0	NA	intron (NM_182899, intron 1 of 9)	CpG	-2784	NM_182898	9586	Hs.437075	XM_005249906	ENSG00000146592	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
2809	chr3	145840970	145844820	+	0	NA	intron (NM_182943, intron 1 of 19)	intron (NM_182943, intron 1 of 19)	36387	NM_000935	5352	Hs.477866	XM_005247535	ENSG00000152952	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
1227	chr5	158764026	158766884	+	0	NA	intron (NR_037889, intron 2 of 4)	intron (NR_037889, intron 2 of 4)	6929	NR_037889	285626	Hs.449275	NR_037889	ENSG00000249738	AC008697.1	-	uncharacterized LOC285626	ncRNA
1417	chr7	93577833	93579744	+	0	NA	Intergenic	Intergenic	27772	NM_004126	2791	Hs.83381	NM_004126		GNG11	GNGT11	guanine nucleotide binding protein (G protein), gamma 11	protein-coding
216	chr10	114344146	114346092	+	0	NA	intron (NM_145206, intron 5 of 7)	intron (NM_145206, intron 5 of 7)	-48810	NR_036177	100422909		NR_036177		MIR4295	-	microRNA 4295	ncRNA
3351	chr9	37290196	37292160	+	0	NA	intron (NM_001289121, intron 2 of 8)	Looper|DNA|PiggyBac	-131529	NM_012203	9380	Hs.155742	XM_005251631	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
3478	chr1	21587188	21589822	+	0	NA	intron (NM_001113347, intron 2 of 16)	intron (NM_001113347, intron 2 of 16)	17678	NM_001113347	1889	Hs.195080	XM_005245750	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
1951	chr11	39241901	39244738	+	0	NA	Intergenic	Intergenic	1071361	NR_047674	57689	Hs.745123	XM_005253030	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
3600	chr1	225922098	225926400	+	0	NA	Intergenic	Intergenic	-41266	NM_003133	6726	Hs.706900	NM_001130440	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9kDa	protein-coding
2766	chr3	81764397	81767626	+	0	NA	intron (NM_000158, intron 1 of 15)	intron (NM_000158, intron 1 of 15)	44939	NM_000158	2632	Hs.436062	XM_005264728	ENSG00000114480	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
4877	chr7	107886127	107887839	+	0	NA	intron (NM_001193582, intron 3 of 30)	intron (NM_001193582, intron 3 of 30)	-6369	NM_001037132	4897	Hs.21422	XM_005250373	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
3661	chr10	45475924	45478014	+	0	NA	intron (NM_032023, intron 3 of 10)	intron (NM_032023, intron 3 of 10)	-2639	NM_007021	11067	Hs.93675	NM_007021	ENSG00000165507	C10orf10	DEPP|FIG	chromosome 10 open reading frame 10	protein-coding
4032	chr17	20105358	20106779	+	0	NA	intron (NM_001033554, intron 1 of 5)	Tigger2b_Pri|DNA|TcMar-Tigger	46761	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
2928	chr5	5061818	5065448	+	0	NA	intron (NR_026994, intron 4 of 6)	intron (NR_026994, intron 4 of 6)	29161	NR_026994	340094	Hs.665092	NR_026994	ENSG00000215231	LINC01020	-	long intergenic non-protein coding RNA 1020	ncRNA
1794	chr1	225920960	225927048	+	0	NA	Intergenic	Intergenic	-41511	NM_003133	6726	Hs.706900	NM_001130440	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9kDa	protein-coding
4755	chr6	24743066	24744183	+	0	NA	Intergenic	Intergenic	-24221	NM_030939	81688	Hs.744857	XM_005249433		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
2193	chr15	50143110	50147121	+	0	NA	Intergenic	L3|LINE|CR1	231889	NM_020234	56986	Hs.127432	XM_005254560	ENSG00000104047	DTWD1	-	DTW domain containing 1	protein-coding
2636	chr20	31362361	31367851	+	0	NA	intron (NM_001207055, intron 1 of 18)	intron (NM_001207055, intron 1 of 18)	-2552	NM_175850	1789	Hs.713611	XR_244135	ENSG00000088305	DNMT3B	ICF|ICF1|M.HsaIIIB	DNA (cytosine-5-)-methyltransferase 3 beta	protein-coding
3522	chr1	145743675	145744359	+	0	NA	intron (NM_002614, intron 2 of 9)	intron (NM_002614, intron 2 of 9)	16351	NM_001201326	5174	Hs.732345	XM_005272968	ENSG00000174827	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
676	chr2	1678544	1680752	+	0	NA	intron (NM_012293, intron 8 of 22)	intron (NM_012293, intron 8 of 22)	68643	NM_012293	7837	Hs.332197	XM_005264707	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
277	chr11	94658735	94661532	+	0	NA	Intergenic	Intergenic	46643	NM_016403	51503	Hs.503597	NM_016403	ENSG00000150316	CWC15	C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
3191	chr6	155648290	155651665	+	0	NA	Intergenic	Intergenic	-14360	NM_016020	51106	Hs.655297	XM_005267005		TFB1M	CGI75|RP11-477D19.2|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
3306	chr8	69168341	69170444	+	0	NA	Intergenic	Intergenic	-73565	NM_052958	116328	Hs.491941	XM_005251149	ENSG00000165084	C8orf34	VEST-1|VEST1	chromosome 8 open reading frame 34	protein-coding
2640	chr20	43375279	43377297	+	0	NA	intron (NM_022358, intron 1 of 1)	intron (NM_022358, intron 1 of 1)	1800	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	potassium channel, subfamily K, member 15	protein-coding
2700	chr22	35704048	35712500	+	0	NA	intron (NR_024195, intron 1 of 13)	intron (NR_024195, intron 1 of 13)	12477	NR_024195	10043	Hs.474705	NM_001135729	ENSG00000100284	TOM1	-	target of myb1 (chicken)	protein-coding
1183	chr5	111518101	111520041	+	0	NA	intron (NM_022140, intron 18 of 22)	intron (NM_022140, intron 18 of 22)	21889	NR_002922	654322	Hs.689709	NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
2747	chr3	49387926	49390389	+	0	NA	Intergenic	Intergenic	6634	NM_201397	2876	Hs.76686	NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
4312	chr20	8136273	8137393	+	0	NA	intron (NM_182734, intron 2 of 32)	LTR16C|LTR|ERVL	23921	NM_015192	23236	Hs.431173	XM_005260681	ENSG00000182621	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
2215	chr15	75337130	75342124	+	0	NA	intron (NM_021823, intron 4 of 5)	intron (NM_021823, intron 4 of 5)	23700	NM_021823	60490	Hs.458922	XM_005254579	ENSG00000138621	PPCDC	-	phosphopantothenoylcysteine decarboxylase	protein-coding
2671	chr21	40290162	40294258	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	57490	NR_109962	101928435	Hs.385528	XR_244312	ENSG00000232837	AF064858.7	-	uncharacterized LOC101928435	ncRNA
123	chr1	201663198	201667589	+	0	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-23243	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
304	chr11	122274881	122278502	+	0	NA	Intergenic	Intergenic	-202921	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
2417	chr2	152583662	152585722	+	0	NA	intron (NM_004543, intron 4 of 148)	intron (NM_004543, intron 4 of 148)	6309	NM_001164508	4703	Hs.588655	XM_005246590	ENSG00000183091	NEB	NEB177D|NEM2	nebulin	protein-coding
1631	chr1	44790774	44795259	+	0	NA	intron (NM_024066, intron 3 of 8)	intron (NM_024066, intron 3 of 8)	27923	NM_024066	79033	Hs.731413	XM_005271183	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
2294	chr17	25571104	25573716	+	0	NA	Intergenic	Intergenic	48612	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
1369	chr6	149320414	149321866	+	0	NA	intron (NM_005715, intron 5 of 7)	intron (NM_005715, intron 5 of 7)	-35320	NR_038408	100128176	Hs.557541	XR_245494		RP11-162J8.2	-	uncharacterized LOC100128176	ncRNA
1151	chr5	38462827	38465191	+	0	NA	exon (NM_182801, exon 6 of 6)	exon (NM_182801, exon 6 of 6)	18431	NM_182801	133584	Hs.20103	NM_182799	ENSG00000164318	EGFLAM	AGRINL|AGRNL	EGF-like, fibronectin type III and laminin G domains	protein-coding
54	chr1	82196069	82197957	+	0	NA	Intergenic	Intergenic	-69069	NM_012302	23266	Hs.649282	XM_005270666	ENSG00000117114	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
3347	chr9	33505504	33508456	+	0	NA	intron (NR_003667, intron 4 of 4)	intron (NR_003667, intron 4 of 4)	4184	NR_003667	441394	Hs.521441	NR_003667		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SUGT1 pseudogene 1	pseudo
1204	chr5	137136715	137139192	+	0	NA	intron (NR_002713, intron 1 of 1)	intron (NR_002713, intron 1 of 1)	1071	NR_002713	4888	Hs.643466	NR_002713	ENSG00000226306	NPY6R	NPY1RL|NPY6RP|PP2|Y2B	neuropeptide Y receptor Y6 (pseudogene)	pseudo
839	chr20	16559779	16562285	+	0	NA	Intergenic	Intergenic	-6953	NM_001199866	55614	Hs.101774	XM_005260750	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
2520	chr2	134188052	134189862	+	0	NA	intron (NR_107007, intron 1 of 6)	intron (NR_107007, intron 1 of 6)	7255	NR_107007	102466866		NR_107007		MIR7853	hsa-mir-7853	microRNA mir-7853	ncRNA
88	chr1	159461735	159463652	+	0	NA	Intergenic	MIR|SINE|MIR	43104	NM_001004469	127385	Hs.553587	NM_001004469	ENSG00000184155	OR10J5	OR1-28	olfactory receptor, family 10, subfamily J, member 5	protein-coding
1009	chr4	26590937	26592368	+	0	NA	intron (NM_018317, intron 1 of 20)	L1ME1|LINE|L1	6106	NM_018317	55296	Hs.479403	XM_005248172	ENSG00000109680	TBC1D19	-	TBC1 domain family, member 19	protein-coding
4825	chr6	167616338	167618153	+	0	NA	Intergenic	Intergenic	33164	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
403	chr13	24132716	24134040	+	0	NA	Intergenic	Intergenic	-11131	NM_148957	55504	Hs.730848	XM_005266445	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	tumor necrosis factor receptor superfamily, member 19	protein-coding
3438	chrX	151149639	151155328	+	0	NA	Intergenic	Intergenic	-9332	NM_004961	2564	Hs.22785	XM_005274661	ENSG00000102287	GABRE	-	gamma-aminobutyric acid (GABA) A receptor, epsilon	protein-coding
1829	chr10	65470350	65474039	+	0	NA	Intergenic	Intergenic	191071	NM_001001330	221035	Hs.499833	XM_005269620	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
3698	chr10	104781080	104782584	+	0	NA	intron (NM_199076, intron 1 of 6)	intron (NM_199076, intron 1 of 6)	103757	NM_199076	54805	Hs.643509	XM_005269933	ENSG00000148842	CNNM2	ACDP2	cyclin M2	protein-coding
1629	chr1	28584372	28590250	+	0	NA	intron (NM_031459, intron 1 of 9)	intron (NM_031459, intron 1 of 9)	1348	NM_031459	83667	Hs.469543	NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
1918	chr11	118487795	118496389	+	0	NA	intron (NM_001144758, intron 4 of 22)	intron (NM_001144758, intron 4 of 22)	13786	NM_001144758	23187	Hs.504062	XM_005271465	ENSG00000019144	PHLDB1	LL5A	pleckstrin homology-like domain, family B, member 1	protein-coding
2755	chr3	64327908	64332138	+	0	NA	Intergenic	Intergenic	-118892	NM_198859	166336	Hs.148105	XM_005264910	ENSG00000163637	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
4197	chr2	75773970	75775788	+	0	NA	intron (NM_032181, intron 1 of 3)	intron (NM_032181, intron 1 of 3)	13213	NM_001135032	84141	Hs.302346	XM_005264587	ENSG00000115363	EVA1A	FAM176A|TMEM166	eva-1 homolog A (C. elegans)	protein-coding
3237	chr7	32098537	32100375	+	0	NA	intron (NM_005020, intron 2 of 17)	intron (NM_005020, intron 2 of 17)	11010	NM_001191057	5137	Hs.728862	XM_005249766	ENSG00000154678	PDE1C	Hcam3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
4487	chr3	131853048	131855636	+	0	NA	Intergenic	MIRb|SINE|MIR	-95892	NM_153429	131034	Hs.199877	XM_005247105	ENSG00000196353	CPNE4	COPN4|CPN4	copine IV	protein-coding
3150	chr6	88874879	88877117	+	0	NA	promoter-TSS (NM_001160258)	promoter-TSS (NM_001160258)	-231	NM_001160258	1268	Hs.75110	XM_005248649	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
4678	chr5	143569166	143570203	+	0	NA	intron (NM_020768, intron 2 of 3)	L2c|LINE|L2	19247	NM_020768	57528	Hs.661870	XM_005268492		KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
703	chr2	33630318	33633410	+	0	NA	Intergenic	Intergenic	-29552	NM_170672	25780	Hs.143674	XM_005264246	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
2729	chr3	190250311	190253542	+	0	NA	intron (NM_001167929, intron 1 of 10)	intron (NM_001167929, intron 1 of 10)	20086	NM_001167931	3556	Hs.478673	XM_005247433	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
3164	chr6	116328867	116331894	+	0	NA	intron (NM_002031, intron 1 of 7)	MER57B1|LTR|ERV1	-29514	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
4366	chr21	35754441	35756738	+	0	NA	intron (NM_058182, intron 2 of 3)	intron (NM_058182, intron 2 of 3)	7840	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
3454	chr1	155909664	155913574	+	0	NA	exon (NM_181885, exon 1 of 1)	exon (NM_181885, exon 1 of 1)	139	NM_181885	339403	Hs.449914	NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin/insulin-like family peptide receptor 4	protein-coding
4382	chr22	19259713	19260342	+	0	NA	intron (NM_007098, intron 2 of 32)	AluSp|SINE|Alu	19212	NM_007098	8218	Hs.368266	XM_005261278	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin, heavy chain-like 1	protein-coding
3304	chr8	66859672	66862054	+	0	NA	Intergenic	Intergenic	-72928	NM_033105	85479	Hs.491885	NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
2885	chr4	88785161	88788773	+	0	NA	Intergenic	Intergenic	32846	NM_001184697	56955	Hs.676357	XM_005263141	ENSG00000152595	MEPE	OF45	matrix extracellular phosphoglycoprotein	protein-coding
1461	chr8	36690914	36692698	+	0	NA	intron (NM_001031836, intron 11 of 26)	intron (NM_001031836, intron 11 of 26)	49964	NM_001031836	157855	Hs.13861	XM_005273423	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
2488	chr2	76355307	76358496	+	0	NA	Intergenic	LTR24B|LTR|ERV1	-418790	NM_001201335	6936	Hs.710597	XM_005264520	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
3106	chr6	13485308	13488722	+	0	NA	promoter-TSS (NM_001242628)	promoter-TSS (NM_001242628)	-600	NM_001242628	54438	Hs.484686	NM_033069	ENSG00000145990	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
2487	chr2	75773743	75775915	+	0	NA	intron (NM_032181, intron 1 of 3)	intron (NM_032181, intron 1 of 3)	13263	NM_001135032	84141	Hs.302346	XM_005264587	ENSG00000115363	EVA1A	FAM176A|TMEM166	eva-1 homolog A (C. elegans)	protein-coding
3188	chr6	151766613	151768712	+	0	NA	intron (NM_017909, intron 1 of 11)	intron (NM_017909, intron 1 of 11)	5654	NM_017909	55005	Hs.744622	XM_005267040	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
3869	chr13	110521498	110522695	+	0	NA	Intergenic	CpG	-83182	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
1985	chr12	20575884	20578833	+	0	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	55179	NM_000921	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
2669	chr21	40278471	40280946	+	0	NA	Intergenic	Intergenic	50245	NR_109926	101928398	Hs.122403	XR_244310		LOC101928398	-	uncharacterized LOC101928398	ncRNA
1691	chr1	41949592	41953019	+	0	NA	promoter-TSS (NM_001956)	promoter-TSS (NM_001956)	-961	NM_001956	1907	Hs.1407	XM_005270565	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
3567	chr1	201159747	201162294	+	0	NA	intron (NM_001164586, intron 1 of 23)	intron (NM_001164586, intron 1 of 23)	1067	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
2003	chr12	51052346	51054925	+	0	NA	intron (NM_173602, intron 3 of 37)	intron (NM_173602, intron 3 of 37)	-104154	NM_005171	466	Hs.648565	NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
3666	chr10	64271279	64273447	+	0	NA	intron (NM_199451, intron 4 of 7)	intron (NM_199451, intron 4 of 7)	-7844	NM_199452	22891	Hs.22653	NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding