PeakID (cmd=annotatePeaks.pl sample2_uniq_peaks.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
127	chr10	34944203	35105392	+	0	NA	intron (NM_001184790, intron 1 of 22)	intron (NM_001184790, intron 1 of 22)	79456	NM_001184791	56288	Hs.131489	XM_005252527	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
32	chr2	153259540	153370645	+	0	NA	intron (NM_052905, intron 1 of 25)	intron (NM_052905, intron 1 of 25)	123341	NM_052905	114793	Hs.654630	XM_005246263	ENSG00000157827	FMNL2	FHOD2	formin-like 2	protein-coding
90	chr2	153257720	153383087	+	0	NA	intron (NM_052905, intron 1 of 25)	intron (NM_052905, intron 1 of 25)	128652	NM_052905	114793	Hs.654630	XM_005246263	ENSG00000157827	FMNL2	FHOD2	formin-like 2	protein-coding
206	chr4	75505069	75609184	+	0	NA	Intergenic	L2a|LINE|L2	76497	NM_001657	374	Hs.270833	NM_001657	ENSG00000109321	AREG	AR|CRDGF|SDGF	amphiregulin	protein-coding
118	chr9	127019484	127083297	+	0	NA	intron (NM_001166168, intron 1 of 9)	AluJr|SINE|Alu	-2860	NM_001166171	10783	Hs.197071	XM_005251663	ENSG00000119408	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
71	chr11	12064636	12206659	+	0	NA	intron (NM_001282663, intron 1 of 27)	L1MC5|LINE|L1	3524	NM_001282668	9645	Hs.501928	XM_005253243	ENSG00000133816	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
102	chr6	26086636	26258079	+	0	NA	TTS (NM_138720)	TTS (NM_138720)	-11667	NM_003523	8344	Hs.534369	NM_003523	ENSG00000197697	HIST1H2BE	H2B.h|H2B/h|H2BFH|dJ221C16.8	histone cluster 1, H2be	protein-coding
16	chr11	62409052	62457453	+	0	NA	promoter-TSS (NM_001286086)	promoter-TSS (NM_001286086)	358	NR_004390	692158	Hs.687390	NR_004390		SNORA57	U99	small nucleolar RNA, H/ACA box 57	snoRNA
55	chr8	62582736	62647523	+	0	NA	intron (NM_032466, intron 1 of 13)	AluY|SINE|Alu	12070	NM_004318	444	Hs.332422	XM_005251235	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
84	chr16	69417513	69517047	+	0	NA	intron (NM_030579, intron 1 of 4)	L1MC4a|LINE|L1	8782	NM_030579	80777	Hs.461131	NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5|RP11-140H17.1	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
233	chr8	38233735	38330844	+	0	NA	intron (NM_023110, intron 6 of 17)	intron (NM_023110, intron 6 of 17)	37640	NM_001199660	137994	Hs.734005	XM_005273406	ENSG00000165046	LETM2	-	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding
259	chrX	45606837	45712709	+	0	NA	Intergenic	Intergenic	-53243	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
194	chr20	52351526	52426469	+	0	NA	Intergenic	Intergenic	103251	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
57	chr8	130949977	131055460	+	0	NA	intron (NR_046360, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	17981	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	-	microRNA 5194	ncRNA
220	chr7	11737848	11887572	+	0	NA	intron (NM_015204, intron 1 of 26)	intron (NM_015204, intron 1 of 26)	59114	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin, type I, domain containing 7A	protein-coding
163	chr16	30193955	30234157	+	0	NA	exon (NM_001017390, exon 5 of 8).2	exon (NM_001017390, exon 5 of 8).2	3507	NM_177552	6818	Hs.460558	NM_177552	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST	sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	protein-coding
89	chr2	86077759	86192759	+	0	NA	Intergenic	Intergenic	-19102	NM_003896	8869	Hs.415117	XM_005264630	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
175	chr18	24031968	24130755	+	0	NA	intron (NM_001258222, intron 1 of 4)	intron (NM_001258222, intron 1 of 4)	47139	NM_001142730	284252	Hs.526630	NM_001136205	ENSG00000134504	KCTD1	C18orf5|SENS	potassium channel tetramerization domain containing 1	protein-coding
31	chr2	86110786	86166013	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-22242	NM_003896	8869	Hs.415117	XM_005264630	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
35	chr3	98670241	98714056	+	0	NA	Intergenic	AluY|SINE|Alu	-71615	NM_080927	131566	Hs.203691	XM_005247118	ENSG00000057019	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
11	chr11	64602010	64662261	+	0	NA	intron (NM_006795, intron 2 of 4)	intron (NM_006795, intron 2 of 4)	14105	NM_006795	10938	Hs.708818	XM_005273722	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH-domain containing 1	protein-coding
208	chr4	95964251	96054445	+	0	NA	intron (NM_001256793, intron 1 of 10)	intron (NM_001256793, intron 1 of 10)	-3294	NM_001256794	658	Hs.598475	XM_005263179	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
93	chr22	30578106	30659954	+	0	NA	Intergenic	L2c|LINE|L2	23810	NM_001257135	3976	Hs.2250	XM_005261601	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
29	chr19	48820073	48904423	+	0	NA	intron (NM_018273, intron 3 of 7)	AluSq|SINE|Alu	4938	NM_018273	55260	Hs.351335	XM_005259031	ENSG00000161558	TMEM143	-	transmembrane protein 143	protein-coding
199	chr22	24570564	24613633	+	0	NA	Intergenic	AluJb|SINE|Alu	14654	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
114	chr8	130921791	131055915	+	0	NA	intron (NR_046360, intron 1 of 14)	intron (NR_046360, intron 1 of 14)	31846	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	-	microRNA 5194	ncRNA
226	chr8	103780172	103828297	+	0	NA	Intergenic	AluSg|SINE|Alu	72163	NM_148174	51582	Hs.459106	XM_005250967	ENSG00000155096	AZIN1	OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
58	chr8	134500727	134588829	+	0	NA	intron (NM_003033, intron 2 of 8)	Charlie1b|DNA|hAT-Charlie	39405	NM_173344	6482	Hs.374257	XM_005251023	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
211	chr5	55384433	55451461	+	0	NA	intron (NM_024669, intron 8 of 11)	intron (NM_024669, intron 8 of 11)	111239	NM_024669	79722	Hs.436214	XM_005248599	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
153	chr14	101907308	101949490	+	0	NA	Intergenic	Intergenic	93614	NR_002770	64150	Hs.745484	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	ncRNA
15	chr11	34652862	34707108	+	0	NA	intron (NM_001206615, intron 6 of 7)	intron (NM_001206615, intron 6 of 7)	25974	NM_001206616	26298	Hs.653859	XM_005252857		EHF	ESE3|ESE3B|ESEJ	ets homologous factor	protein-coding
101	chr5	142148679	142268275	+	0	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	39998	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	AC008533.1	ARHGAP26 antisense RNA 1	ncRNA
73	chr11	65620606	65692460	+	0	NA	promoter-TSS (NM_198897)	promoter-TSS (NM_198897)	-523	NM_198897	9158	Hs.7768	XM_005274391	ENSG00000172500	FIBP	FGFIBP|FIBP-1	fibroblast growth factor (acidic) intracellular binding protein	protein-coding
76	chr11	34605416	34708255	+	0	NA	intron (NM_001206616, intron 1 of 8)	intron (NM_001206616, intron 1 of 8)	2824	NM_001206616	26298	Hs.653859	XM_005252857		EHF	ESE3|ESE3B|ESEJ	ets homologous factor	protein-coding
62	chr1	149781448	149872781	+	0	NA	Intergenic	Intergenic	2933	NM_001005464	333932	Hs.706618	NM_001005464		HIST2H3A	H3/n|H3/o	histone cluster 2, H3a	protein-coding
67	chr10	62632542	62762280	+	0	NA	intron (NM_001242359, intron 2 of 11)	intron (NM_001242359, intron 2 of 11)	6622	NM_001242359	9886	Hs.737374	NM_001242359	ENSG00000072422	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
241	chr8	29188446	29210709	+	0	NA	intron (NM_001394, intron 1 of 3)	intron (NM_001394, intron 1 of 3)	6745	NM_057158	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
198	chr22	24626616	24671621	+	0	NA	non-coding (NR_003714, exon 1 of 7)	non-coding (NR_003714, exon 1 of 7)	1529	NR_003714	29774	Hs.534980	NM_014549	ENSG00000128262	POM121L9P	DKFZP434P211|UNQ2565	POM121 transmembrane nucleoporin-like 9, pseudogene	pseudo
139	chr11	2905207	2978180	+	0	NA	intron (NM_002555, intron 8 of 10)	intron (NM_002555, intron 8 of 10)	8957	NM_003311	7262	Hs.154036	NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology-like domain, family A, member 2	protein-coding
129	chr10	30867423	30903569	+	0	NA	Intergenic	Intergenic	33151	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
236	chr8	144528534	144701037	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	8835	NM_015117	23144	Hs.521915	XM_005250846	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
249	chr8	129526229	129573163	+	0	NA	Intergenic	Intergenic	387334	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
218	chr6	27832091	27871834	+	0	NA	Intergenic	AluY|SINE|Alu	6608	NM_003535	8356	Hs.484990	NM_003535	ENSG00000197153	HIST1H3J	H3/j|H3FJ	histone cluster 1, H3j	protein-coding
202	chr3	118883220	118961411	+	0	NA	intron (NM_006952, intron 7 of 7)	L1PA8A|LINE|L1	29890	NM_006952	7348	Hs.271580	NM_006952	ENSG00000114638	UPK1B	TSPAN20|UPIB|UPK1	uroplakin 1B	protein-coding
168	chr17	15780922	15915279	+	0	NA	promoter-TSS (NM_000676)	promoter-TSS (NM_000676)	-131	NM_000676	136	Hs.167046	NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
184	chr2	42395706	42468557	+	0	NA	intron (NM_001145076, intron 1 of 21)	intron (NM_001145076, intron 1 of 21)	35641	NM_019063	27436	Hs.713173	XM_005264267	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
135	chr11	114150709	114188765	+	0	NA	intron (NM_006169, intron 2 of 2)	intron (NM_006169, intron 2 of 2)	3202	NM_006169	4837	Hs.503911	NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
14	chr11	69450579	69519769	+	0	NA	intron (NM_153451, intron 3 of 4)	intron (NM_153451, intron 3 of 4)	4991	NM_153451	220064	Hs.667996	NM_153451	ENSG00000149716	ORAOV1	TAOS1	oral cancer overexpressed 1	protein-coding
145	chr11	102138681	102196164	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-20759	NM_182962	330	Hs.127799	XM_005271534	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
49	chr8	19433347	19549641	+	0	NA	intron (NR_024040, intron 1 of 9)	intron (NR_024040, intron 1 of 9)	-31438	NM_001130518	55790	Hs.721954	NM_001130518	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
178	chr18	74531174	74561582	+	0	NA	intron (NM_007345, intron 1 of 30)	intron (NM_007345, intron 1 of 30)	10262	NM_007345	7776	Hs.719137	XM_005266762	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
24	chr16	69417584	69483882	+	0	NA	Intergenic	AluSx|SINE|Alu	-7765	NM_030579	80777	Hs.461131	NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5|RP11-140H17.1	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
140	chr11	18399928	18442245	+	0	NA	exon (NM_001165416, exon 3 of 7)	exon (NM_001165416, exon 3 of 7)	3273	NM_001165414	3939	Hs.2795	NM_001135239	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDH1|LDHM	lactate dehydrogenase A	protein-coding
124	chr1	92291241	92368843	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	21794	NM_003243	7049	Hs.735919	NM_001195683	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
104	chr6	26019581	26072344	+	0	NA	exon (NM_003531, exon 1 of 1)	exon (NM_003531, exon 1 of 1)	323	NM_003531	8352	Hs.248176	NM_003531	ENSG00000196532	HIST1H3C	H3.1|H3/c|H3FC	histone cluster 1, H3c	protein-coding
131	chr11	16901398	16968743	+	0	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	100893	NM_175058	144100	Hs.12332	XM_005252801	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing, family A member 7	protein-coding
181	chr19	9150512	9192243	+	0	NA	Intergenic	AluSx|SINE|Alu	-32544	NM_001004456	125963	Hs.553577	NM_001004456	ENSG00000170929	OR1M1	OR19-5|OR19-6	olfactory receptor, family 1, subfamily M, member 1	protein-coding
234	chr8	38362220	38424315	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7087	NM_207412	389649	Hs.546586	NM_207412	ENSG00000196166	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
154	chr15	58712152	58770420	+	0	NA	intron (NM_000236, intron 1 of 8)	intron (NM_000236, intron 1 of 8)	17111	NM_000236	3990	Hs.654472	XM_005254372	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase, hepatic	protein-coding
23	chr16	14394183	14427687	+	0	NA	Intergenic	AluJb|SINE|Alu	7793	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
96	chr3	148989231	149071078	+	0	NA	Intergenic	L1PA17|LINE|L1	21105	NM_001184723	116441	Hs.22026	NM_001184723	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
159	chr16	69047164	69180305	+	0	NA	intron (NM_024562, intron 17 of 17)	L1MC4a|LINE|L1	-25733	NM_001199280	3038	Hs.592069	XM_005255919	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
160	chr16	70687322	70806749	+	0	NA	intron (NM_018052, intron 14 of 18)	intron (NM_018052, intron 14 of 18)	-27081	NM_138383	92154	Hs.432387	XM_005256236	ENSG00000132613	MTSS1L	ABBA-1	metastasis suppressor 1-like	protein-coding
47	chr7	47797396	47830817	+	0	NA	TTS (NM_138295)	TTS (NM_138295)	13032	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	AC019066.3	long intergenic non-protein coding RNA 525	ncRNA
8	chr10	62690194	62762021	+	0	NA	intron (NR_024554, intron 2 of 11)	intron (NR_024554, intron 2 of 11)	-22074	NM_014836	9886	Hs.737374	NM_001242359	ENSG00000072422	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
98	chr3	45634229	45702389	+	0	NA	intron (NM_014240, intron 1 of 7)	L1MC1|LINE|L1	31986	NM_014240	8994	Hs.621057	XM_005265529		LIMD1	-	LIM domains containing 1	protein-coding
37	chr3	149014644	149061235	+	0	NA	3' UTR (NM_001184723, exon 5 of 5)	3' UTR (NM_001184723, exon 5 of 5)	13320	NM_001184723	116441	Hs.22026	NM_001184723	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
43	chr6	27758974	27808550	+	0	NA	TTS (NM_003521)	TTS (NM_003521)	940	NM_003521	8342	Hs.182432	NM_003521	ENSG00000196374	HIST1H2BM	H2B/e|H2BFE|dJ160A22.3	histone cluster 1, H2bm	protein-coding
195	chr20	55351443	55383760	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	163243	NM_003222	7022	Hs.473152	XM_005260537	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
5	chr10	32199901	32251618	+	0	NA	Intergenic	MER101-int|LTR|ERV1	-7955	NM_018287	94134	Hs.741991	XM_005252644	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
21	chr14	102720723	102791481	+	0	NA	intron (NM_001272011, intron 1 of 10)	AluSx|SINE|Alu	15435	NM_001272011	5891	Hs.104119	NM_001272011	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1	MOK protein kinase	protein-coding
193	chr20	33889902	33918806	+	0	NA	intron (NM_018244, intron 7 of 9)	MIRc|SINE|MIR	-24129	NM_178468	128876	Hs.592149	NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83, member C	protein-coding
119	chr1	3370193	3465385	+	0	NA	exon (NM_001409, exon 19 of 37)	exon (NM_001409, exon 19 of 37)	46642	NM_014448	27237	Hs.87435	XM_005244740	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
180	chr19	8633398	8684348	+	0	NA	intron (NM_030957, intron 12 of 25)	intron (NM_030957, intron 12 of 25)	-1793	NM_001282352	81794	Hs.657508	XM_005272498	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif, 10	protein-coding
244	chr8	38851906	38900616	+	0	NA	intron (NR_027878, intron 6 of 20)	intron (NR_027878, intron 6 of 20)	21756	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
162	chr16	29460471	29483104	+	0	NA	intron (NM_177552, intron 1 of 7)	intron (NM_177552, intron 1 of 7)	580	NM_177552	6818	Hs.460558	NM_177552	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST	sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	protein-coding
246	chr8	90892975	90921338	+	0	NA	Intergenic	L1MA3|LINE|L1	-6940	NM_004337	734	Hs.436445	NM_001126111	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
240	chr8	27713106	27774944	+	0	NA	promoter-TSS (NR_036249)	promoter-TSS (NR_036249)	-392	NR_036249	100422828		NR_036249		MIR4287	-	microRNA 4287	ncRNA
74	chr11	66590789	66755470	+	0	NA	intron (NM_000920, intron 2 of 21)	intron (NM_000920, intron 2 of 21)	2211	NM_022172	5091	Hs.89890	XM_005274030	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
61	chr1	19227682	19292769	+	0	NA	intron (NM_001136265, intron 1 of 8)	AluJb|SINE|Alu	22601	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
230	chr8	29481226	29539142	+	0	NA	Intergenic	Intergenic	95441	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
115	chr8	128738292	128780627	+	0	NA	Intergenic	L2a|LINE|L2	11144	NM_002467	4609	Hs.202453	XM_005250922	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	v-myc avian myelocytomatosis viral oncogene homolog	protein-coding
103	chr6	27759061	27809111	+	0	NA	TTS (NM_003521)	TTS (NM_003521)	1264	NM_003521	8342	Hs.182432	NM_003521	ENSG00000196374	HIST1H2BM	H2B/e|H2BFE|dJ160A22.3	histone cluster 1, H2bm	protein-coding
201	chr3	10205867	10270848	+	0	NA	intron (NM_001570, intron 2 of 12)	intron (NM_001570, intron 2 of 12)	31794	NM_001570	3656	Hs.449207	XR_245126	ENSG00000134070	IRAK2	IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding
113	chr8	62491130	62705703	+	0	NA	intron (NM_032466, intron 1 of 13)	AluSx1|SINE|Alu	3992	NM_001164752	444	Hs.332422	XM_005251235	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
152	chr13	100612082	100645885	+	0	NA	Intergenic	Intergenic	-4805	NM_033132	85416	Hs.508570	NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
189	chr20	46117889	46253846	+	0	NA	intron (NM_181659, intron 1 of 22)	L1M5|LINE|L1	55266	NM_001174088	8202	Hs.592142	XM_005260564	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
91	chr2	191743948	191814008	+	0	NA	intron (NM_001256310, intron 7 of 14)	intron (NM_001256310, intron 7 of 14)	33431	NM_014905	2744	Hs.737608	XM_005246467	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
107	chr8	25027263	25204010	+	0	NA	intron (NM_024940, intron 2 of 51)	intron (NM_024940, intron 2 of 51)	73349	NM_024940	80005	Hs.195403	XM_005273650	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
87	chr19	48812255	48930822	+	0	NA	intron (NM_012451, intron 2 of 4)	MIRb|SINE|MIR	3887	NM_012451	23546	Hs.408333	XM_005258693	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
174	chr17	79360316	79402303	+	0	NA	intron (NM_001080519, intron 1 of 26)	intron (NM_001080519, intron 1 of 26)	-6731	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
77	chr12	12527977	12611392	+	0	NA	intron (NM_058169, intron 2 of 3)	AluJo|SINE|Alu	59664	NM_058169	118426	Hs.720779	XM_005253296	ENSG00000165714	LOH12CR1	LOH1CR12	loss of heterozygosity, 12, chromosomal region 1	protein-coding
214	chr5	106999374	107010578	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	1620	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
221	chr7	151380029	151453740	+	0	NA	intron (NM_001040633, intron 3 of 15)	intron (NM_001040633, intron 3 of 15)	-87540	NM_024429	51422	Hs.647072	XM_005250002	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
39	chr4	95541820	95598760	+	0	NA	intron (NM_001011513, intron 9 of 12)	AluSz6|SINE|Alu	-108838	NM_001203	658	Hs.598475	XM_005263179	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
64	chr10	33402765	33630609	+	0	NA	intron (NM_001244972, intron 6 of 16)	intron (NM_001244972, intron 6 of 16)	107146	NM_001244972	8829	Hs.653996	NM_001024628	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
97	chr3	12327717	12416989	+	0	NA	intron (NM_138711, intron 2 of 7)	intron (NM_138711, intron 2 of 7)	-20648	NM_015869	5468	Hs.162646	NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma	peroxisome proliferator-activated receptor gamma	protein-coding
12	chr11	65620171	65688844	+	0	NA	intron (NM_004214, intron 3 of 9)	L2|LINE|L2	1503	NM_004214	9158	Hs.7768	XM_005274391	ENSG00000172500	FIBP	FGFIBP|FIBP-1	fibroblast growth factor (acidic) intracellular binding protein	protein-coding
41	chr5	142182014	142263146	+	0	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	25895	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	AC008533.1	ARHGAP26 antisense RNA 1	ncRNA
52	chr8	142162267	142218781	+	0	NA	intron (NM_014957, intron 16 of 22)	intron (NM_014957, intron 16 of 22)	48149	NM_001080431	57210	Hs.372492	XM_005251001	ENSG00000022567	SLC45A4	-	solute carrier family 45, member 4	protein-coding
229	chr8	26427786	26498733	+	0	NA	intron (NM_001386, intron 3 of 13)	L1ME4a|LINE|L1	27338	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
45	chr6	26020110	26072047	+	0	NA	TTS (NM_003531)	TTS (NM_003531)	439	NM_003531	8352	Hs.248176	NM_003531	ENSG00000196532	HIST1H3C	H3.1|H3/c|H3FC	histone cluster 1, H3c	protein-coding
260	chrX	48331848	48399314	+	0	NA	Intergenic	Intergenic	-1766	NM_022825	64840	Hs.386453	XM_005272635	ENSG00000102312	PORCN	DHOF|FODH|MG61|PORC|PPN	porcupine homolog (Drosophila)	protein-coding
237	chr8	146010451	146029876	+	0	NA	Intergenic	Intergenic	-2358	NM_000973	6132	Hs.178551	XM_005272332	ENSG00000161016	RPL8	L8	ribosomal protein L8	protein-coding
188	chr2	235043324	235127797	+	0	NA	Intergenic	AluSx3|SINE|Alu	126214	NM_006944	6694	Hs.444488	XM_005246102	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
68	chr10	102099462	102155541	+	0	NA	Intergenic	L1M4|LINE|L1	-5832	NR_026762	90271	Hs.628088	NR_026762		LINC00263	C10orf75|NCRNA00263	long intergenic non-protein coding RNA 263	ncRNA
1	chr1	19227380	19292981	+	0	NA	intron (NM_001136265, intron 1 of 8)	AluJb|SINE|Alu	22646	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
136	chr11	117667106	117704885	+	0	NA	Intergenic	Intergenic	9464	NM_001680	486	Hs.731865	XM_005271570	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
116	chr8	134500489	134595133	+	0	NA	intron (NM_003033, intron 2 of 8)	AluJr|SINE|Alu	36372	NM_173344	6482	Hs.374257	XM_005251023	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
144	chr11	68846934	68905443	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	59838	NM_139075	219931	Hs.131851	XM_005273824		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
100	chr4	95672724	95764010	+	0	NA	intron (NM_001203, intron 1 of 12)	THE1A|LTR|ERVL-MaLR	39239	NM_001203	658	Hs.598475	XM_005263179	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
222	chr7	2795868	2864385	+	0	NA	intron (NM_007353, intron 2 of 3)	L2b|LINE|L2	24767	NM_001282441	2768	Hs.487341	XM_005249714	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
25	chr16	14451057	14504572	+	0	NA	Intergenic	L1MB3|LINE|L1	74672	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
120	chr1	9167017	9262725	+	0	NA	Intergenic	AluJr|SINE|Alu	-3035	NR_029610	407040	Hs.730325	NR_029610	ENSG00000207865	MIR34A	MIRN34A|miRNA34A|mir-34	microRNA 34a	ncRNA
83	chr16	14378214	14676085	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	124007	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
254	chr9	19084490	19203264	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16273	NM_001122	123	Hs.3416	NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
177	chr18	68078256	68132611	+	0	NA	Intergenic	AluSx1|SINE|Alu	149296	NM_004232	9306	Hs.44439	XM_005266783	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
217	chr6	27093980	27130193	+	0	NA	intron (NM_080593, intron 1 of 1)	AluSx1|SINE|Alu	2551	NM_080593	85236	Hs.689116	NM_080593	ENSG00000197903	HIST1H2BK	H2B/S|H2BFAiii|H2BFT|H2BK	histone cluster 1, H2bk	protein-coding
239	chr8	11702642	11760816	+	0	NA	Intergenic	Intergenic	-6083	NM_147782	1508	Hs.520898	XM_005272367	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
122	chr1	12492193	12548108	+	0	NA	intron (NM_018156, intron 65 of 68)	intron (NM_018156, intron 65 of 68)	-47150	NR_003025	677885	Hs.721005	NR_003025		SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
143	chr11	59303454	59341608	+	0	NA	Intergenic	Intergenic	40100	NR_036120	100422880		NR_036120		MIR3162	-	microRNA 3162	ncRNA
205	chr4	74859885	74906171	+	0	NA	Intergenic	L2a|LINE|L2	-18582	NM_002994	6374	Hs.89714	NM_002994	ENSG00000163735	CXCL5	ENA-78|SCYB5	chemokine (C-X-C motif) ligand 5	protein-coding
158	chr16	15520987	15702208	+	0	NA	intron (NM_033201, intron 2 of 5)	(TG)n|Simple_repeat|Simple_repeat	15474	NM_001142469	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
42	chr6	26086609	26236369	+	0	NA	intron (NM_138720, intron 1 of 1)	L1MEd|LINE|L1	3140	NM_138720	3017	Hs.591797	XM_005249039	ENSG00000158373	HIST1H2BD	H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6	histone cluster 1, H2bd	protein-coding
22	chr15	67315092	67491255	+	0	NA	intron (NM_005902, intron 1 of 8)	L1MB7|LINE|L1	-14881	NM_001145102	4088	Hs.742270	XM_005254383	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
46	chr6	142618717	142710236	+	0	NA	intron (NM_198569, intron 2 of 24)	intron (NM_198569, intron 2 of 24)	41420	NM_001032395	57211	Hs.743302	XM_005267061	ENSG00000112414	GPR126	APG1|DREG|PS1TP2|VIGR	G protein-coupled receptor 126	protein-coding
235	chr8	141930740	142049271	+	0	NA	intron (NM_153831, intron 1 of 31)	THE1B|LTR|ERVL-MaLR	21407	NM_153831	5747	Hs.395482	XM_005251003	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
6	chr10	33192294	33305518	+	0	NA	Intergenic	Intergenic	-1613	NM_002211	3688	Hs.643813	XM_005252448	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	protein-coding
36	chr3	129323884	129384961	+	0	NA	Intergenic	MER101|LTR|ERV1	-28840	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
213	chr5	76066788	76136137	+	0	NA	Intergenic	MIR|SINE|MIR	-13371	NM_005242	2150	Hs.744181	NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	coagulation factor II (thrombin) receptor-like 1	protein-coding
183	chr2	42310789	42375660	+	0	NA	Intergenic	Intergenic	-53266	NM_001145076	27436	Hs.713173	XM_005264267	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
94	chr3	98670337	98714054	+	0	NA	Intergenic	AluY|SINE|Alu	-71662	NM_080927	131566	Hs.203691	XM_005247118	ENSG00000057019	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
51	chr8	25027481	25119972	+	0	NA	intron (NM_024940, intron 1 of 51)	(TA)n|Simple_repeat|Simple_repeat	31439	NM_024940	80005	Hs.195403	XM_005273650	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
169	chr17	64218028	64274162	+	0	NA	Intergenic	MER34C_|LTR|ERV1	-20539	NM_000042	350	Hs.445358	XM_005257304	ENSG00000091583	APOH	B2G1|B2GP1|BG	apolipoprotein H (beta-2-glycoprotein I)	protein-coding
132	chr11	47931876	47972601	+	0	NA	Intergenic	Intergenic	-49872	NM_001098503	5795	Hs.318547	XM_005253038	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type, J	protein-coding
171	chr17	76247017	76357701	+	0	NA	Intergenic	Intergenic	-27786	NR_073178	100996291	Hs.744493	NR_073178	ENSG00000204277	RP11-219G17.4	-	uncharacterized LOC100996291	ncRNA
200	chr3	148896148	148972277	+	0	NA	intron (NR_046371, intron 1 of 17)	MLT1E3|LTR|ERVL-MaLR	5620	NM_000096	1356	Hs.558314	NM_000096	ENSG00000047457	CP	CP-2	ceruloplasmin (ferroxidase)	protein-coding
18	chr12	116783736	116829135	+	0	NA	Intergenic	L2b|LINE|L2	59688	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
125	chr1	242373296	242409217	+	0	NA	intron (NM_152666, intron 5 of 10)	intron (NM_152666, intron 5 of 10)	221528	NM_001195811	200150	Hs.672452	XM_005273084	ENSG00000180287	PLD5	PLDC	phospholipase D family, member 5	protein-coding
44	chr6	72085030	72131471	+	0	NA	Intergenic	AluSx|SINE|Alu	5074	NR_029504	407029		NR_029504	ENSG00000207827	MIR30A	MIRN30A	microRNA 30a	ncRNA
27	chr18	67954313	68054903	+	0	NA	Intergenic	Intergenic	48471	NM_004232	9306	Hs.44439	XM_005266783	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
161	chr16	89623052	89700549	+	0	NA	exon (NM_153636, exon 14 of 15)	exon (NM_153636, exon 14 of 15)	-17916	NM_001128141	1800	Hs.109	XM_005256285	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1 (renal)	protein-coding
190	chr20	55567902	55636624	+	0	NA	Intergenic	Intergenic	239444	NM_001719	655	Hs.473163	NM_001719	ENSG00000101144	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
95	chr3	129294898	129407483	+	0	NA	Intergenic	Intergenic	-25608	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
20	chr13	67648976	67723141	+	0	NA	intron (NM_203487, intron 2 of 4)	intron (NM_203487, intron 2 of 4)	118410	NM_020403	5101	Hs.654709	XM_005266406	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
109	chr8	8084321	8245601	+	0	NA	Intergenic	Intergenic	74296	NM_001080826	157285	Hs.657673	XM_005272369	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
231	chr8	29565051	29632750	+	0	NA	intron (NR_026765, intron 1 of 3)	intron (NR_026765, intron 1 of 3)	6725	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
243	chr8	32402944	32452093	+	0	NA	intron (NM_013964, intron 1 of 11)	AluSx|SINE|Alu	21790	NM_004495	3084	Hs.668810	XM_005273485	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|NDF|SMDF	neuregulin 1	protein-coding
151	chr12	116926415	116999998	+	0	NA	Intergenic	HAL1-3A_ME|LINE|L1	-8021	NR_027345	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
148	chr12	718726	756564	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	35110	NM_016533	4815	Hs.656450	XM_005253689	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
78	chr12	31582356	31745763	+	0	NA	intron (NM_144973, intron 1 of 20)	AluJo|SINE|Alu	-78798	NR_046909	100874249	Hs.627628	NR_046909	ENSG00000255867	DENND5B-AS1	RP11-820K3.5	DENND5B antisense RNA 1	ncRNA
106	chr7	47783588	47861019	+	0	NA	intron (NM_138295, intron 56 of 56)	intron (NM_138295, intron 56 of 56)	-12586	NM_025031	80099	Hs.287647	NM_025031	ENSG00000136275	C7orf69	-	chromosome 7 open reading frame 69	protein-coding
157	chr15	71664672	71765155	+	0	NA	intron (NM_024817, intron 6 of 16)	L1MA2|LINE|L1	-124628	NM_001286429	79875	Hs.387057	XM_005254678	ENSG00000187720	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
65	chr10	32145118	32258780	+	0	NA	intron (NM_001270695, intron 1 of 18)	L1M2|LINE|L1	-4095	NM_001270699	94134	Hs.741991	XM_005252644	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
197	chr21	43163059	43207682	+	0	NA	intron (NM_020639, intron 1 of 7)	intron (NM_020639, intron 1 of 7)	1879	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
203	chr3	171492086	171571035	+	0	NA	Intergenic	Intergenic	-3276	NM_002662	5337	Hs.382865	XM_005247533	ENSG00000075651	PLD1	-	phospholipase D1, phosphatidylcholine-specific	protein-coding
261	chrX	93831615	93863264	+	0	NA	Intergenic	Intergenic	918427	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	family with sequence similarity 133, member A	protein-coding
138	chr11	122499959	122622573	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	34868	NM_032873	84959	Hs.444075	XM_005271712	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
81	chr13	67642392	67723728	+	0	NA	intron (NM_203487, intron 2 of 4)	intron (NM_203487, intron 2 of 4)	118042	NR_046637	100874087	Hs.606903	NR_046637		PCDH9-AS4	-	PCDH9 antisense RNA 4	ncRNA
137	chr11	122006802	122074563	+	0	NA	intron (NR_024430, intron 2 of 3)	intron (NR_024430, intron 2 of 3)	-17666	NR_029515	406892		NR_029515	ENSG00000207994	MIR100	MIRN100|miR-100	microRNA 100	ncRNA
60	chr9	127019591	127073950	+	0	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	-7480	NM_001166171	10783	Hs.197071	XM_005251663	ENSG00000119408	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
86	chr18	67951454	68058097	+	0	NA	Intergenic	Intergenic	48638	NM_004232	9306	Hs.44439	XM_005266783	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
247	chr8	126421526	126448438	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-7581	NM_025195	10221	Hs.444947	XM_005250752	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
204	chr4	75229226	75250641	+	0	NA	intron (NM_001432, intron 1 of 4)	intron (NM_001432, intron 1 of 4)	9073	NM_001432	2069	Hs.115263	NM_001432	ENSG00000124882	EREG	ER	epiregulin	protein-coding
165	chr16	84608964	84656535	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	18953	NM_021149	23406	Hs.289092	NM_021149	ENSG00000103187	COTL1	CLP	coactosin-like 1 (Dictyostelium)	protein-coding
17	chr12	63095248	63207230	+	0	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	153773	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
2	chr1	149801157	149835801	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	3861	NR_036461	337873	Hs.666643	NR_036461	ENSG00000203819	HIST2H2BC	H2B/t|HIST2H2BD	histone cluster 2, H2bc (pseudogene)	pseudo
186	chr2	38291088	38344798	+	0	NA	Intergenic	Intergenic	-14620	NM_000104	1545	Hs.154654	NM_000104	ENSG00000138061	CYP1B1	CP1B|CYPIB1|GLC3A|P4501B1	cytochrome P450, family 1, subfamily B, polypeptide 1	protein-coding
82	chr14	102650624	102791551	+	0	NA	intron (NM_001272011, intron 3 of 10)	MER5A|DNA|hAT-Charlie	-14129	NR_073541	5891	Hs.104119	NM_001272011	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1	MOK protein kinase	protein-coding
110	chr8	17459644	17678690	+	0	NA	intron (NM_001001924, intron 6 of 14)	Tigger1|DNA|TcMar-Tigger	10563	NM_001001931	57509	Hs.7946	XM_005273577	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
147	chr12	76407620	76448654	+	0	NA	Intergenic	Intergenic	-2581	NM_007350	22822	Hs.602085	NM_007350		PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology-like domain, family A, member 1	protein-coding
228	chr8	17692401	17784886	+	0	NA	intron (NM_201552, intron 4 of 8)	intron (NM_201552, intron 4 of 8)	14270	NM_147203	2267	Hs.491143	XM_005273450	ENSG00000104760	FGL1	HFREP1|HP-041|LFIRE-1|LFIRE1	fibrinogen-like 1	protein-coding
69	chr10	121409938	121444186	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	16180	NM_004281	9531	Hs.523309	XM_005270287	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BCL2-associated athanogene 3	protein-coding
112	chr8	22406272	22464805	+	0	NA	promoter-TSS (NM_021630)	promoter-TSS (NM_021630)	-716	NM_021630	64236	Hs.632034	XM_005273597	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
172	chr17	64651691	64725042	+	0	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-94824	NR_030364	693219		NR_030364		MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
191	chr20	5701854	5788637	+	0	NA	intron (NM_152504, intron 1 of 2)	AluJo|SINE|Alu	14202	NM_152504	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
224	chr7	95097464	95141995	+	0	NA	intron (NM_145872, intron 1 of 2)	intron (NM_145872, intron 1 of 2)	4516	NM_145872	51666	Hs.737518	NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
187	chr2	228229106	228281291	+	0	NA	Intergenic	MER41C|LTR|ERV1	-11176	NM_024795	79853	Hs.156652	NM_024795	ENSG00000168955	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
223	chr7	6310044	6373460	+	0	NA	Intergenic	Intergenic	-29510	NM_004227	9265	Hs.487479	XM_005249905	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
262	chrX	122897988	122970718	+	0	NA	Intergenic	AluSz|SINE|Alu	-59309	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
79	chr12	63073454	63212008	+	0	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	145265	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
121	chr1	110305693	110371136	+	0	NA	Intergenic	Intergenic	-31770	NM_024526	79574	Hs.485352	XM_005271193	ENSG00000198758	EPS8L3	EPS8R3	EPS8-like 3	protein-coding
212	chr5	39071499	39150151	+	0	NA	intron (NM_199335, intron 15 of 17)	intron (NM_199335, intron 15 of 17)	-36315	NM_152756	253260	Hs.407926	XM_005248277	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR, complex 2	protein-coding
126	chr10	34672225	34796742	+	0	NA	intron (NM_001184790, intron 4 of 22)	intron (NM_001184790, intron 4 of 22)	369770	NM_001184791	56288	Hs.131489	XM_005252527	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
238	chr8	8700802	8752084	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	24688	NM_004225	9258	Hs.379414	XR_246634	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
251	chr8	145628334	145705971	+	0	NA	intron (NM_013432, intron 7 of 25)	intron (NM_013432, intron 7 of 25)	2660	NM_013432	4796	Hs.675285	XM_005272320	ENSG00000160949	TONSL	IKBR|NFKBIL2	tonsoku-like, DNA repair protein	protein-coding
253	chr9	139412629	139471323	+	0	NA	Intergenic	Intergenic	-1265	NR_039821	100616301		NR_039821	ENSG00000265181	MIR4674	-	microRNA 4674	ncRNA
176	chr18	74765828	74845452	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	39134	NM_001025100	4155	Hs.551713	XM_005266697	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
209	chr5	106836356	106954923	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	110957	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
216	chr6	151325124	151411913	+	0	NA	intron (NM_001242768, intron 26 of 27)	intron (NM_001242768, intron 26 of 27)	181049	NM_001242768	25902	Hs.591343	XM_005266907	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
256	chr9	14308442	14324497	+	0	NA	intron (NM_001190738, intron 1 of 8)	intron (NM_001190738, intron 1 of 8)	-2424	NM_001190737	4781	Hs.644095	XM_005251467	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
117	chr9	75436756	75490361	+	0	NA	Intergenic	L1PB1|LINE|L1	104675	NM_000689	216	Hs.76392	XM_005251800	ENSG00000165092	ALDH1A1	ALDC|ALDH-E1|ALDH1|ALDH11|HEL-S-53e|HEL12|PUMB1|RALDH1	aldehyde dehydrogenase 1 family, member A1	protein-coding
170	chr17	64408485	64581121	+	0	NA	intron (NM_002737, intron 3 of 16)	L2a|LINE|L2	195877	NM_002737	5578	Hs.708867	XM_005257502	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PRKACA	protein kinase C, alpha	protein-coding
33	chr2	191699105	191814572	+	0	NA	intron (NM_001256310, intron 1 of 14)	intron (NM_001256310, intron 1 of 14)	11291	NM_014905	2744	Hs.737608	XM_005246467	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
63	chr10	134200692	134267464	+	0	NA	Intergenic	Intergenic	23376	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
7	chr10	102098414	102137076	+	0	NA	intron (NM_005063, intron 5 of 5)	intron (NM_005063, intron 5 of 5)	10973	NM_005063	6319	Hs.558396	NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS	stearoyl-CoA desaturase (delta-9-desaturase)	protein-coding
80	chr12	116774249	116905006	+	0	NA	Intergenic	Intergenic	26496	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
26	chr17	33347735	33422501	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	5641	NM_001017368	117584	Hs.13680	NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase	protein-coding
227	chr8	145719837	145760638	+	0	NA	intron (NM_004260, intron 9 of 21)	intron (NM_004260, intron 9 of 21)	2973	NM_004260	9401	Hs.31442	NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ protein-like 4	protein-coding
99	chr4	95539672	95627022	+	0	NA	intron (NM_001011513, intron 11 of 12)	intron (NM_001011513, intron 11 of 12)	-95781	NM_001203	658	Hs.598475	XM_005263179	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
72	chr11	27369170	27529560	+	0	NA	intron (NM_018490, intron 1 of 17)	L4|LINE|RTE	44969	NM_018490	55366	Hs.502176	XM_005253004	ENSG00000205213	LGR4	BNMD17|GPR48	leucine-rich repeat containing G protein-coupled receptor 4	protein-coding
179	chr19	54480822	54527981	+	0	NA	intron (NM_145814, intron 3 of 3)	MIR3|SINE|MIR	8859	NM_145814	59285	Hs.631560	NM_031897	ENSG00000130433	CACNG6	-	calcium channel, voltage-dependent, gamma subunit 6	protein-coding
255	chr9	132488904	132546297	+	0	NA	Intergenic	Intergenic	-2256	NM_004878	9536	Hs.146688	NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
182	chr2	42033600	42101147	+	0	NA	Intergenic	AluJb|SINE|Alu	-37322	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	AC104654.1	-	uncharacterized LOC388942	ncRNA
108	chr8	128805470	129224353	+	0	NA	intron (NR_003367, intron 4 of 7)	MLT1C|LTR|ERVL-MaLR	-6233	NR_031611	100302170		NR_031611		MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
92	chr2	208539208	208615706	+	0	NA	intron (NM_152523, intron 2 of 10)	intron (NM_152523, intron 2 of 10)	1193	NM_152523	151195	Hs.597952	XM_005246343	ENSG00000163249	CCNYL1	-	cyclin Y-like 1	protein-coding
232	chr8	32080932	32146468	+	0	NA	intron (NM_013962, intron 1 of 4)	L1P2|LINE|L1	-184562	NR_047475	100874286	Hs.147060	NR_047475		NRG1-IT3	RP11-468C1.1	NRG1 intronic transcript 3 (non-protein coding)	ncRNA
10	chr11	27369098	27529609	+	0	NA	intron (NM_018490, intron 1 of 17)	L4|LINE|RTE	44981	NM_018490	55366	Hs.502176	XM_005253004	ENSG00000205213	LGR4	BNMD17|GPR48	leucine-rich repeat containing G protein-coupled receptor 4	protein-coding
225	chr8	29347777	29389663	+	0	NA	Intergenic	Intergenic	-160453	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
142	chr11	57191654	57251311	+	0	NA	Intergenic	MIRb|SINE|MIR	-6528	NM_178570	349667	Hs.603388	XM_005273973		RTN4RL2	NGRH1|NgR2	reticulon 4 receptor-like 2	protein-coding
207	chr4	84455852	84504845	+	0	NA	intron (NM_001256421, intron 3 of 12)	intron (NM_001256421, intron 3 of 12)	22878	NM_032717	84803	Hs.99196	XM_005263314	ENSG00000138678	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
167	chr17	53468329	53540520	+	0	NA	Intergenic	Intergenic	-5083	NM_012329	23531	Hs.656753	XM_005257179	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
48	chr8	128805702	129089735	+	0	NA	intron (NR_003367, intron 1 of 7)	intron (NR_003367, intron 1 of 7)	13251	NR_103558	641384	Hs.629674	NM_001037234		TMEM75	-	transmembrane protein 75	ncRNA
133	chr11	61514752	61604081	+	0	NA	promoter-TSS (NM_004111)	promoter-TSS (NM_004111)	617	NR_030342	693196		NR_030342		MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
123	chr1	27312904	27340662	+	0	NA	3' UTR (NM_001013642, exon 2 of 2)	3' UTR (NM_001013642, exon 2 of 2)	6588	NM_001013642	388610	Hs.355747	XM_005245867	ENSG00000253368	TRNP1	C1orf225|TNRP	TMF1-regulated nuclear protein 1	protein-coding
149	chr12	76325220	76393366	+	0	NA	Intergenic	Intergenic	66263	NM_007350	22822	Hs.602085	NM_007350		PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology-like domain, family A, member 1	protein-coding
50	chr8	22406844	22464789	+	0	NA	promoter-TSS (NM_021630)	promoter-TSS (NM_021630)	-438	NM_021630	64236	Hs.632034	XM_005273597	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
210	chr5	10549432	10636484	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	28523	NM_001164440	651746	Hs.26039	XM_005248343		ANKRD33B	RP11-215G15.5	ankyrin repeat domain 33B	protein-coding
258	chr9	113297612	113346003	+	0	NA	intron (NM_153366, intron 1 of 47)	L1M5|LINE|L1	20353	NM_153366	79987	Hs.726867	NM_153366	ENSG00000165124	SVEP1	C9orf13|CCP22|POLYDOM|SEL-OB|SELOB	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding
173	chr17	70676378	70724014	+	0	NA	intron (NM_139177, intron 7 of 9)	AluSz6|SINE|Alu	-63585	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	ncRNA
56	chr8	128745435	128779986	+	0	NA	Intergenic	AluJr|SINE|Alu	14395	NM_002467	4609	Hs.202453	XM_005250922	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	v-myc avian myelocytomatosis viral oncogene homolog	protein-coding
66	chr10	33191630	33331972	+	0	NA	Intergenic	Intergenic	-14508	NM_002211	3688	Hs.643813	XM_005252448	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	protein-coding
19	chr12	31618719	31702183	+	0	NA	intron (NM_144973, intron 1 of 20)	intron (NM_144973, intron 1 of 20)	-82406	NR_046909	100874249	Hs.627628	NR_046909	ENSG00000255867	DENND5B-AS1	RP11-820K3.5	DENND5B antisense RNA 1	ncRNA
54	chr8	17612655	17666696	+	0	NA	intron (NM_001001924, intron 1 of 14)	intron (NM_001001924, intron 1 of 14)	18751	NM_001001924	57509	Hs.7946	XM_005273577	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
70	chr11	3851982	3942425	+	0	NA	intron (NM_001277961, intron 1 of 11)	intron (NM_001277961, intron 1 of 11)	19911	NR_039835	100616453		NR_039835	ENSG00000263421	MIR4687	-	microRNA 4687	ncRNA
166	chr16	84732608	84790315	+	0	NA	intron (NM_001272075, intron 2 of 14)	L1MC4|LINE|L1	27906	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
88	chr19	607170	640395	+	0	NA	intron (NM_005035, intron 5 of 20)	intron (NM_005035, intron 5 of 20)	9786	NM_005035	5442	Hs.254113	XM_005259580	ENSG00000099821	POLRMT	APOLMT|MTRNAP|MTRPOL|h-mtRPOL	polymerase (RNA) mitochondrial (DNA directed)	protein-coding
30	chr2	235859652	235940399	+	0	NA	intron (NM_014521, intron 1 of 5)	intron (NM_014521, intron 1 of 5)	39397	NM_014521	23677	Hs.516777	XM_005246069	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
141	chr11	35159758	35214618	+	0	NA	intron (NM_001001389, intron 1 of 16)	intron (NM_001001389, intron 1 of 16)	26771	NM_001202556	960	Hs.502328	XM_005253231	ENSG00000026508	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
128	chr10	13691619	13761026	+	0	NA	intron (NM_018027, intron 15 of 24)	intron (NM_018027, intron 15 of 24)	97383	NM_003675	8559	Hs.729158	XM_005252634	ENSG00000165630	PRPF18	PRP18|hPrp18	pre-mRNA processing factor 18	protein-coding
252	chr9	132077059	132126113	+	0	NA	Intergenic	Intergenic	18291	NM_001012715	414318	Hs.449434	NM_001012715		C9orf106	bA65J3.5	chromosome 9 open reading frame 106	protein-coding
28	chr19	1154170	1216028	+	0	NA	Intergenic	MIR|SINE|MIR	-10817	NM_014963	22904	Hs.408708	XM_005259519	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
75	chr11	69450296	69519742	+	0	NA	intron (NM_153451, intron 3 of 4)	intron (NM_153451, intron 3 of 4)	5146	NM_153451	220064	Hs.667996	NM_153451	ENSG00000149716	ORAOV1	TAOS1	oral cancer overexpressed 1	protein-coding
40	chr4	95677249	95699117	+	0	NA	intron (NM_001203, intron 1 of 12)	L3|LINE|CR1	9055	NM_001203	658	Hs.598475	XM_005263179	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
134	chr11	69044727	69089842	+	0	NA	Intergenic	Intergenic	5662	NM_138768	26579	Hs.523848	XM_005273905	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
156	chr15	71487606	71631636	+	0	NA	intron (NM_024817, intron 5 of 16)	L1P3|LINE|L1	125833	NM_024817	79875	Hs.387057	XM_005254678	ENSG00000187720	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
192	chr20	10327322	10367111	+	0	NA	Intergenic	AluJb|SINE|Alu	65357	NM_018848	8195	Hs.741430	XM_005260853	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
250	chr8	144328481	144375473	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	2370	NM_138465	2738	Hs.400533	XM_005250868	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
59	chr8	142237797	142328431	+	0	NA	Intergenic	Intergenic	-18386	NM_001286646	57210	Hs.372492	XM_005251001	ENSG00000022567	SLC45A4	-	solute carrier family 45, member 4	protein-coding
215	chr5	179716646	179793912	+	0	NA	exon (NM_005110, exon 7 of 19)	exon (NM_005110, exon 7 of 19)	25036	NM_005110	9945	Hs.696497	XM_005266017	ENSG00000131459	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
150	chr12	116673361	116738617	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	9002	NM_015335	23389	Hs.715095	XM_005253860	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
130	chr11	68063778	68167794	+	0	NA	intron (NM_002335, intron 2 of 22)	intron (NM_002335, intron 2 of 22)	35678	NM_002335	4041	Hs.6347	XM_005273994	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
155	chr15	71395213	71447451	+	0	NA	Intergenic	Intergenic	-12456	NM_024817	79875	Hs.387057	XM_005254678	ENSG00000187720	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
53	chr8	8145372	8206872	+	0	NA	exon (NM_001080826, exon 5 of 5)	exon (NM_001080826, exon 5 of 5)	63135	NM_001080826	157285	Hs.657673	XM_005272369	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
245	chr8	67024445	67046164	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-3974	NM_184087	84675	Hs.85524	XM_005251316	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
219	chr7	11632363	11708339	+	0	NA	intron (NM_015204, intron 2 of 26)	intron (NM_015204, intron 2 of 26)	201473	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin, type I, domain containing 7A	protein-coding
13	chr11	66599513	66754070	+	0	NA	intron (NM_000920, intron 2 of 21)	intron (NM_000920, intron 2 of 21)	-1451	NM_022172	5091	Hs.89890	XM_005274030	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
257	chr9	21674699	21691065	+	0	NA	Intergenic	MIRb|SINE|MIR	-119753	NM_002451	4507	Hs.193268	XM_005251463	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
105	chr6	142618464	142710946	+	0	NA	intron (NM_198569, intron 2 of 24)	intron (NM_198569, intron 2 of 24)	41649	NM_001032395	57211	Hs.743302	XM_005267061	ENSG00000112414	GPR126	APG1|DREG|PS1TP2|VIGR	G protein-coupled receptor 126	protein-coding
85	chr17	33324825	33425766	+	0	NA	intron (NR_037713, intron 1 of 6)	AluY|SINE|Alu	15464	NM_001017368	117584	Hs.13680	NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase	protein-coding
3	chr10	134200506	134275802	+	0	NA	Intergenic	Intergenic	-20560	NM_173541	170393	Hs.375059	NM_173541		C10orf91	RP11-432J24.4|bA432J24.4	chromosome 10 open reading frame 91	protein-coding
185	chr2	165351296	165428479	+	0	NA	intron (NM_004490, intron 3 of 13)	AluYc|SINE|Alu	88473	NM_004490	2888	Hs.411881	XM_005246477	ENSG00000115290	GRB14	-	growth factor receptor-bound protein 14	protein-coding
248	chr8	128210486	128239567	+	0	NA	intron (NR_108049, intron 1 of 1)	L2b|LINE|L2	6487	NR_108049	100507056	Hs.343864	XR_108886	ENSG00000247844	CCAT1	-	colon cancer associated transcript 1 (non-protein coding)	ncRNA
111	chr8	19372411	19578494	+	0	NA	intron (NR_024040, intron 1 of 9)	AluJr|SINE|Alu	-15396	NM_001130518	55790	Hs.721954	NM_001130518	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
9	chr10	121409886	121443076	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	15599	NM_004281	9531	Hs.523309	XM_005270287	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BCL2-associated athanogene 3	protein-coding
146	chr12	62974416	63056061	+	0	NA	Intergenic	L2b|LINE|L2	17772	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
38	chr3	12327965	12360885	+	0	NA	intron (NM_138711, intron 1 of 7)	intron (NM_138711, intron 1 of 7)	13989	NM_138711	5468	Hs.162646	NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma	peroxisome proliferator-activated receptor gamma	protein-coding
4	chr10	33525643	33627043	+	0	NA	intron (NM_001244972, intron 2 of 16)	intron (NM_001244972, intron 2 of 16)	47490	NM_001244972	8829	Hs.653996	NM_001024628	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
34	chr22	30589277	30659730	+	0	NA	Intergenic	AluJb|SINE|Alu	18337	NM_001257135	3976	Hs.2250	XM_005261601	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
164	chr16	70405145	70474129	+	0	NA	intron (NM_006927, intron 1 of 6)	L1MB7|LINE|L1	33354	NM_006927	6483	Hs.368611	XM_005256114	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
196	chr21	16355230	16439372	+	0	NA	intron (NM_003489, intron 2 of 3)	L1MC4|LINE|L1	39825	NM_003489	8204	Hs.155017	XM_005261062	ENSG00000180530	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
242	chr8	32159384	32209099	+	0	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	-114021	NR_047475	100874286	Hs.147060	NR_047475		NRG1-IT3	RP11-468C1.1	NRG1 intronic transcript 3 (non-protein coding)	ncRNA