PeakID (cmd=annotatePeaks.pl sample1_uniq_peaks.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
127	chr21	44814642	44943709	+	0	NA	Intergenic	MER31A|LTR|ERV1	9271	NR_026960	284836	Hs.146127	NR_026960	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
32	chr14	100838263	100910338	+	0	NA	intron (NM_001161476, intron 2 of 6)	intron (NM_001161476, intron 2 of 6)	31467	NM_024515	79446	Hs.497600	XM_005268056	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
90	chr9	137532432	137599327	+	0	NA	intron (NM_001278074, intron 1 of 65)	L1ME1|LINE|L1	32228	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	collagen, type V, alpha 1	protein-coding
118	chr2	234258728	234399328	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	32228	NM_003648	8527	Hs.471675	XM_005246107	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
71	chr5	71402150	71484003	+	0	NA	intron (NM_005909, intron 2 of 6)	AluSz|SINE|Alu	-22218	NR_039967	100616377		NR_039967		MIR4803	-	microRNA 4803	ncRNA
102	chr12	20519042	20809974	+	0	NA	intron (NM_000921, intron 1 of 15)	L1MC3|LINE|L1	-60290	NM_001244683	5139	Hs.737522	XM_005253389	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
18	chr10	70960100	71006279	+	0	NA	intron (NM_025130, intron 1 of 17)	L1ME4a|LINE|L1	3130	NM_025130	80201	Hs.522988	NM_025130	ENSG00000156510	HKDC1	-	hexokinase domain containing 1	protein-coding
125	chr20	35082385	35126616	+	0	NA	intron (NM_183006, intron 1 of 6)	AluSx|SINE|Alu	14358	NM_183006	22839	Hs.249600	XM_005260329	ENSG00000080845	DLGAP4	DAP4|DLP4|RP5-977B1.6|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
16	chr10	116230586	116287955	+	0	NA	intron (NM_001003407, intron 6 of 21)	intron (NM_001003407, intron 6 of 21)	27415	NM_006720	3983	Hs.593868	XM_005269818	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
44	chr18	33032997	33107546	+	0	NA	intron (NM_001098817, intron 1 of 6)	intron (NM_001098817, intron 1 of 6)	7684	NM_001098817	125476	Hs.464903	XM_005258195	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
55	chr20	31032909	31074422	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	17720	NM_080616	140688	Hs.729596	XM_005260282	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
84	chr7	137566524	137693881	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	-7892	NM_001243523	100130880	Hs.712161	NM_001243523		AC022173.2	-	uncharacterized LOC100130880	protein-coding
27	chr12	47767194	47806501	+	0	NA	Intergenic	Intergenic	-176621	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
161	chr19	46681923	46731102	+	0	NA	Intergenic	LTR7C|LTR|ERV1	-6987	NR_027003	93429	Hs.569940	NR_027003	ENSG00000268460	DKFZp434J0226	-	uncharacterized LOC93429	ncRNA
95	chr1	838954	912270	+	0	NA	intron (NM_152486, intron 7 of 13)	intron (NM_152486, intron 7 of 13)	14491	NM_152486	148398	Hs.335293	XM_005244723	ENSG00000187634	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
57	chr20	22696524	22803073	+	0	NA	Intergenic	Intergenic	-161643	NR_109883	101929685	Hs.563018	XR_244256		LOC101929685	-	uncharacterized LOC101929685	ncRNA
20	chr10	93335463	93394400	+	0	NA	intron (NR_024467, intron 1 of 4)	intron (NR_024467, intron 1 of 4)	6286	NR_024467	100188947	Hs.535293	NR_024467		LOC100188947	-	uncharacterized LOC100188947	ncRNA
163	chr2	43383865	43456707	+	0	NA	Intergenic	Intergenic	33459	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
109	chr16	87798074	87907560	+	0	NA	Intergenic	Intergenic	15449	NR_106833	102465464		NR_106833		MIR6775	hsa-mir-6775	microRNA mir-6775	ncRNA
151	chr10	5264501	5337562	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	62233	NM_001818	1109	Hs.567245	NM_001818	ENSG00000198610	AKR1C4	3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA	aldo-keto reductase family 1, member C4	protein-coding
89	chr9	104104257	104162518	+	0	NA	exon (NM_001127610, exon 2 of 4)	exon (NM_001127610, exon 2 of 4)	12414	NM_001127610	570	Hs.284712	NM_001127610	ENSG00000136881	BAAT	BACAT|BAT	bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)	protein-coding
175	chr21	44815438	44943252	+	0	NA	Intergenic	MER31A|LTR|ERV1	9441	NR_026960	284836	Hs.146127	NR_026960	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
148	chr1	43388109	43434179	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	-13576	NR_033967	440584	Hs.260928	NR_033967	ENSG00000227533	SLC2A1-AS1	RP5-848E13.3	SLC2A1 antisense RNA 1	ncRNA
31	chr14	70438647	70500810	+	0	NA	intron (NM_001034852, intron 7 of 11)	intron (NM_001034852, intron 7 of 11)	77206	NM_182936	6547	Hs.337696	XM_005268017	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
35	chr16	53075340	53146720	+	0	NA	intron (NM_025134, intron 1 of 38)	AluSx|SINE|Alu	22085	NM_025134	80205	Hs.622347	XM_005256168	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
11	chr1	201640774	201689676	+	0	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-23411	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
78	chr6	116328867	116395529	+	0	NA	intron (NM_002031, intron 1 of 7)	intron (NM_002031, intron 1 of 7)	2304	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
93	chr1	201404208	201483245	+	0	NA	Intergenic	L1MC2|LINE|L1	-5427	NM_012396	23612	Hs.268557	NM_012396	ENSG00000174307	PHLDA3	TIH1	pleckstrin homology-like domain, family A, member 3	protein-coding
106	chr15	89628136	89684360	+	0	NA	intron (NM_007011, intron 5 of 14)	MIR|SINE|MIR	24867	NM_152924	11057	Hs.122337	XM_005254832	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
157	chr16	57611321	57684641	+	0	NA	Intergenic	MIR|SINE|MIR	-5929	NM_005682	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
65	chr3	112337666	112376427	+	0	NA	exon (NM_199511, exon 2 of 8)	exon (NM_199511, exon 2 of 8)	2944	NM_199512	151887	Hs.477128	XM_005247135	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
29	chr12	130561128	130628537	+	0	NA	Intergenic	Intergenic	51391	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
138	chr6	160767923	160849600	+	0	NA	intron (NM_021977, intron 1 of 10)	intron (NM_021977, intron 1 of 10)	39356	NM_021977	6581	Hs.567337	XM_005267106	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 (organic cation transporter), member 3	protein-coding
114	chr2	36556285	36807629	+	0	NA	intron (NM_016441, intron 4 of 16)	intron (NM_016441, intron 4 of 16)	98587	NM_016441	51232	Hs.699247	XM_005264357	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
58	chr20	43940203	44003154	+	0	NA	intron (NM_002999, intron 1 of 4)	intron (NM_002999, intron 1 of 4)	5386	NM_002999	6385	Hs.632267	XM_005260494	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding
153	chr12	106475749	106534834	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	28520	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
15	chr10	112586716	112685683	+	0	NA	intron (NM_001199492, intron 2 of 11)	intron (NM_001199492, intron 2 of 11)	4646	NM_001199492	27250	Hs.711490	XM_005269702	ENSG00000150593	PDCD4	H731	programmed cell death 4 (neoplastic transformation inhibitor)	protein-coding
137	chr6	126210002	126281070	+	0	NA	intron (NM_001199621, intron 12 of 14)	LTR86A1|LTR|ERVL	5166	NM_001199622	135112	Hs.171426	XM_005266822	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
81	chr6	41649513	41709731	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	22517	NM_001271945	7942	Hs.485360	XM_005249410	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
60	chr21	40144751	40229515	+	0	NA	intron (NM_001256295, intron 6 of 10)	intron (NM_001256295, intron 6 of 10)	9378	NM_005239	2114	Hs.644231	XM_005260935	ENSG00000157557	ETS2	ETS2IT1	v-ets avian erythroblastosis virus E26 oncogene homolog 2	protein-coding
101	chr12	7972032	8149063	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16755	NM_001286237	144195	Hs.739527	XM_005253312	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
73	chr5	118603571	118673347	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-30411	NM_001286814	25816	Hs.656274	XM_005271952		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
86	chr9	123365464	123498623	+	0	NA	intron (NM_001080497, intron 1 of 5)	intron (NM_001080497, intron 1 of 5)	44722	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF-like-domains 9	protein-coding
76	chr6	33538342	33609064	+	0	NA	Intergenic	AluSg|SINE|Alu	-12588	NR_027908	401253	Hs.520075	NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
62	chr3	15306288	15382307	+	0	NA	intron (NM_001018009, intron 3 of 8)	L2b|LINE|L2	29839	NM_004844	9467	Hs.257761	XM_005265588	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
67	chr4	41309444	41663756	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	123798	NM_001289122	22998	Hs.335163	XM_005248057	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
165	chr2	161060941	161132804	+	0	NA	Intergenic	Intergenic	31534	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
139	chr6	166297678	166425525	+	0	NA	intron (NR_026860, intron 1 of 1)	(TA)n|Simple_repeat|Simple_repeat	-39438	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
129	chr3	46950413	47042378	+	0	NA	intron (NM_001277074, intron 1 of 6)	AluSq4|SINE|Alu	21596	NR_102269	151903	Hs.745081	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
2	chr1	23035948	23101410	+	0	NA	intron (NM_004442, intron 1 of 15)	intron (NM_004442, intron 1 of 15)	22669	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	ncRNA
17	chr10	52345741	52386893	+	0	NA	intron (NM_147156, intron 1 of 10)	intron (NM_147156, intron 1 of 10)	17420	NM_147156	259230	Hs.654698	XM_005269675	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
186	chr6	166372958	166424419	+	0	NA	intron (NR_026860, intron 1 of 1)	intron (NR_026860, intron 1 of 1)	-2351	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
110	chr16	73048374	73131476	+	0	NA	intron (NM_001164766, intron 1 of 8)	intron (NM_001164766, intron 1 of 8)	2609	NM_001164766	463	Hs.598297	XM_005255957	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
82	chr6	136672306	136872283	+	0	NA	intron (NM_001198617, intron 1 of 15)	MER34C_|LTR|ERV1	15719	NM_001198615	9053	Hs.486548	XM_005267209	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
147	chr1	839007	912523	+	0	NA	intron (NM_152486, intron 7 of 13)	CpG	14644	NM_152486	148398	Hs.335293	XM_005244723	ENSG00000187634	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
168	chr20	4895960	4989960	+	0	NA	intron (NM_203327, intron 2 of 16)	intron (NM_203327, intron 2 of 16)	39185	NM_005116	9962	Hs.516866	XM_005260901	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
184	chr6	11172454	11233819	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	29779	NM_182966	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
135	chr5	59004571	59096815	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	13745	NM_001197218	5144	Hs.117545	XM_005248537	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
14	chr10	12364322	12527774	+	0	NA	intron (NM_020397, intron 1 of 9)	AluSp|SINE|Alu	54465	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
112	chr19	35453175	35540707	+	0	NA	intron (NM_020895, intron 1 of 19)	intron (NM_020895, intron 1 of 19)	5695	NM_020895	57655	Hs.515351	XM_005259103	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
69	chr4	173881714	173946382	+	0	NA	intron (NM_001034845, intron 10 of 12)	LTR8|LTR|ERV1	-175856	NM_017423	51809	Hs.548088	XM_005263062	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
172	chr20	33839487	33874836	+	0	NA	intron (NM_006690, intron 6 of 8)	intron (NM_006690, intron 6 of 8)	8799	NR_102706	101410538	Hs.732566	NR_102705		MMP24-AS1	-	MMP24 antisense RNA 1	ncRNA
145	chr1	201404891	201482814	+	0	NA	Intergenic	AluJr|SINE|Alu	-5553	NM_012396	23612	Hs.268557	NM_012396	ENSG00000174307	PHLDA3	TIH1	pleckstrin homology-like domain, family A, member 3	protein-coding
49	chr2	39694323	39753554	+	0	NA	intron (NR_037875, intron 3 of 5)	intron (NR_037875, intron 3 of 5)	59381	NR_037875	728730	Hs.655344	XR_244956	ENSG00000231312	AC007246.3	-	uncharacterized LOC728730	ncRNA
178	chr4	140957117	141038625	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	77362	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
24	chr12	12928606	12993823	+	0	NA	Intergenic	Intergenic	-5066	NM_016355	51202	Hs.719938	NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding
187	chr9	33101093	33173443	+	0	NA	intron (NM_001497, intron 1 of 5)	L2c|LINE|L2	-29678	NR_108110	101929639	Hs.545818	XR_242540		RP11-326F20.5	-	uncharacterized LOC101929639	ncRNA
140	chr6	11183809	11236688	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	22667	NM_182966	4739	Hs.37982	NM_001142393	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
124	chr20	33827843	33874663	+	0	NA	intron (NM_006690, intron 4 of 8)	L2c|LINE|L2	14707	NR_102706	101410538	Hs.732566	NR_102705		MMP24-AS1	-	MMP24 antisense RNA 1	ncRNA
104	chr12	106468155	106535090	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	32189	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
131	chr5	17203784	17318322	+	0	NA	intron (NM_006317, intron 1 of 1)	FLAM_C|SINE|Alu	43383	NM_006317	10409	Hs.646924	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
181	chr5	175223869	175314172	+	0	NA	intron (NM_006650, intron 2 of 4)	intron (NM_006650, intron 2 of 4)	-29481	NM_001008220	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
121	chr20	17510586	17599565	+	0	NA	intron (NM_006870, intron 1 of 3)	intron (NM_006870, intron 1 of 3)	4476	NM_001011546	11034	Hs.705996	XM_005260653	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin (actin depolymerizing factor)	protein-coding
79	chr6	1285845	1338054	+	0	NA	promoter-TSS (NM_033260)	promoter-TSS (NM_033260)	-726	NM_033260	94234	Hs.591352	NM_033260	ENSG00000164379	FOXQ1	HFH1	forkhead box Q1	protein-coding
154	chr14	65165583	65232578	+	0	NA	intron (NM_015549, intron 8 of 14)	intron (NM_015549, intron 8 of 14)	27887	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
23	chr11	73962605	74042698	+	0	NA	intron (NR_110031, intron 4 of 11)	L1PA4|LINE|L1	20070	NM_182904	283208	Hs.660541	XM_005273923	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
96	chr1	43387629	43437661	+	0	NA	intron (NM_006516, intron 1 of 9)	MIRb|SINE|MIR	-12075	NR_033967	440584	Hs.260928	NR_033967	ENSG00000227533	SLC2A1-AS1	RP5-848E13.3	SLC2A1 antisense RNA 1	ncRNA
126	chr20	43306823	43377297	+	0	NA	Intergenic	AluSx|SINE|Alu	-1825	NM_003881	8839	Hs.592145	XM_005260603	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
159	chr17	56428209	56495903	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	-32457	NR_073470	6827	Hs.718477	NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H	suppressor of Ty 4 homolog 1 (S. cerevisiae)	protein-coding
160	chr19	35484511	35522858	+	0	NA	intron (NM_020895, intron 7 of 19)	AluSg|SINE|Alu	12438	NM_020895	57655	Hs.515351	XM_005259103	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
176	chr22	37561190	37597756	+	0	NA	intron (NM_182486, intron 2 of 3)	intron (NM_182486, intron 2 of 3)	4857	NM_182486	114904	Hs.22011	XM_005261325	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
47	chr2	37869757	37941147	+	0	NA	Intergenic	Intergenic	-5774	NM_001270436	10602	Hs.369574	NM_001270436	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
8	chr1	201497662	201597778	+	0	NA	Intergenic	L1MD1|LINE|L1	58688	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo
98	chr10	4973385	5091605	+	0	NA	intron (NM_001354, intron 10 of 10)	intron (NM_001354, intron 10 of 10)	13711	NM_001135241	1646	Hs.734597	XM_005252370	ENSG00000151632	AKR1C2	AKR1C-pseudo|BABP|DD|DD2|DDH2|HAKRD|HBAB|MCDR2|SRXY8	aldo-keto reductase family 1, member C2	protein-coding
37	chr17	28647953	28733137	+	0	NA	Intergenic	AluSc|SINE|Alu	-15397	NM_001304	1362	Hs.446079	NM_001199775	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
117	chr2	161059374	161145443	+	0	NA	Intergenic	Intergenic	25998	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
43	chr18	11826279	11873224	+	0	NA	intron (NM_001261443, intron 6 of 12)	Charlie15a|DNA|hAT-Charlie	-1638	NM_020412	57132	Hs.656244	NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
5	chr1	41404636	41489735	+	0	NA	intron (NM_001905, intron 1 of 18)	intron (NM_001905, intron 1 of 18)	2178	NM_001905	1503	Hs.473087	XM_005270535	ENSG00000171793	CTPS1	CTPS	CTP synthase 1	protein-coding
170	chr20	34623146	34770918	+	0	NA	intron (NM_001258329, intron 1 of 22)	AluY|SINE|Alu	16400	NM_177996	2036	Hs.437422	XM_005260318	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
33	chr15	33115841	33167183	+	0	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-130446	NR_109767	100131315	Hs.610545	XM_001724741		LOC100131315	-	uncharacterized LOC100131315	ncRNA
21	chr11	19999056	20071110	+	0	NA	intron (NM_001244963, intron 12 of 39)	intron (NM_001244963, intron 12 of 39)	-9019	NM_001111019	89797	Hs.639428	XM_005253212	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
63	chr3	39166774	39232042	+	0	NA	Intergenic	Intergenic	-4306	NM_033027	64651	Hs.370950	XM_005265403	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine-serine-rich nuclear protein 1	protein-coding
7	chr1	201082504	201199466	+	0	NA	promoter-TSS (NM_001288564)	promoter-TSS (NM_001288564)	-275	NM_001288564	252839	Hs.181444	XM_005245063	ENSG00000116857	TMEM9	TMEM9A	transmembrane protein 9	protein-coding
26	chr12	88122511	88222379	+	0	NA	Intergenic	Intergenic	6043	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
80	chr6	36510764	36654735	+	0	NA	Intergenic	Intergenic	7540	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
119	chr20	269576	460706	+	0	NA	intron (NM_021158, intron 1 of 3)	AluSc|SINE|Alu	3833	NM_021158	57761	Hs.516826	XM_005260772	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
180	chr5	172184057	172387697	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	24654	NM_001031711	57222	Hs.509163	NM_001031711	ENSG00000113719	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
99	chr10	47041920	47176796	+	0	NA	intron (NR_033957, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	22633	NM_001278795	100996758	Hs.524719	XM_005277644		LOC100996758	-	neuropeptide Y receptor type 4-like	protein-coding
179	chr5	131698355	131728268	+	0	NA	intron (NM_003060, intron 1 of 9)	intron (NM_003060, intron 1 of 9)	-7703	NR_037898	553103	Hs.570908	NR_037898	ENSG00000233006	LOC553103	-	uncharacterized LOC553103	ncRNA
162	chr2	36556334	36734447	+	0	NA	intron (NM_016441, intron 2 of 16)	intron (NM_016441, intron 2 of 16)	62020	NM_016441	51232	Hs.699247	XM_005264357	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
72	chr5	95114453	95198817	+	0	NA	intron (NM_002064, intron 1 of 2)	AluSq2|SINE|Alu	1942	NM_001243659	2745	Hs.28988	NM_001118890	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
74	chr5	139671469	139752660	+	0	NA	TTS (NM_001945)	TTS (NM_001945)	14124	NM_001945	1839	Hs.592942	NM_001945	ENSG00000113070	HBEGF	DTR|DTS|DTSF|HEGFL	heparin-binding EGF-like growth factor	protein-coding
182	chr5	150003753	150037218	+	0	NA	intron (NM_001109974, intron 1 of 1)	intron (NM_001109974, intron 1 of 1)	278	NM_007286	11346	Hs.435228	XM_005268368	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
61	chr21	44726672	44769536	+	0	NA	intron (NR_103713, intron 1 of 2)	L1MC4a|LINE|L1	3815	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	AP001046.4|C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
108	chr16	57611048	57712546	+	0	NA	promoter-TSS (NM_001145771)	promoter-TSS (NM_001145771)	-622	NM_201525	9289	Hs.513633	XM_005256237	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
115	chr2	43378826	43456747	+	0	NA	Intergenic	Intergenic	35959	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
92	chr1	94019129	94181266	+	0	NA	intron (NM_001261408, intron 5 of 13)	AluSx|SINE|Alu	-20495	NM_001261410	8412	Hs.36958	XM_005271251	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
103	chr12	107710799	107910872	+	0	NA	intron (NM_001018072, intron 1 of 16)	intron (NM_001018072, intron 1 of 16)	98638	NM_001018072	121551	Hs.271272	XM_005268645	ENSG00000151136	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
10	chr1	234610659	234681628	+	0	NA	Intergenic	L1MA4|LINE|L1	21382	NR_038426	100506795	Hs.448989	XR_247017	ENSG00000231768	RP5-855F14.1	-	uncharacterized LOC100506795	ncRNA
113	chr19	46681693	46731108	+	0	NA	Intergenic	LTR7C|LTR|ERV1	-7099	NR_027003	93429	Hs.569940	NR_027003	ENSG00000268460	DKFZp434J0226	-	uncharacterized LOC93429	ncRNA
152	chr12	107711058	107809768	+	0	NA	intron (NM_001018072, intron 1 of 16)	intron (NM_001018072, intron 1 of 16)	48216	NM_001018072	121551	Hs.271272	XM_005268645	ENSG00000151136	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
142	chr9	33101212	33186140	+	0	NA	intron (NM_001497, intron 1 of 5)	MER5A|DNA|hAT-Charlie	-23270	NR_108110	101929639	Hs.545818	XR_242540		RP11-326F20.5	-	uncharacterized LOC101929639	ncRNA
91	chrX	64854917	64928000	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	3947	NM_002444	4478	Hs.87752	XM_005262269	ENSG00000147065	MSN	HEL70	moesin	protein-coding
167	chr20	326301	457713	+	0	NA	intron (NM_031229, intron 2 of 11)	AluJb|SINE|Alu	3298	NM_031229	10616	Hs.247280	XM_005260645	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding
48	chr2	37990986	38037773	+	0	NA	Intergenic	Intergenic	42475	NR_110011	101929559	Hs.722926	XR_244986	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
107	chr15	86120770	86164478	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-20557	NM_001270546	11214	Hs.710656	XM_005254839	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
87	chr9	78979627	79018967	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	10147	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
174	chr20	43306606	43376706	+	0	NA	Intergenic	MER97a|DNA|hAT-Tip100	-2229	NM_003881	8839	Hs.592145	XM_005260603	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
77	chr6	56488177	56638052	+	0	NA	intron (NM_183380, intron 5 of 93)	intron (NM_183380, intron 5 of 93)	52024	NR_046940	100873774		NR_046940	ENSG00000207203	RNU6-71P	RNU6-71	RNA, U6 small nuclear 71, pseudogene	snRNA
133	chr5	172115253	172389749	+	0	NA	Intergenic	LTR33|LTR|ERVL	-8722	NM_001031711	57222	Hs.509163	NM_001031711	ENSG00000113719	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
149	chr1	157961918	158008366	+	0	NA	intron (NM_001286349, intron 1 of 12)	intron (NM_001286349, intron 1 of 12)	22079	NM_018240	55243	Hs.657006	XM_005245305	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
123	chr20	56212899	56362886	+	0	NA	Intergenic	Intergenic	-1300	NM_199171	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
50	chr2	207986136	208032931	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-10672	NM_001270944	8609	Hs.471221	XM_005246925	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
39	chr17	20058549	20140185	+	0	NA	intron (NM_001033554, intron 1 of 5)	MER51-int|LTR|ERV1	40060	NM_001033555	92521	Hs.431045	XM_005256858	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
64	chr3	111565379	111657387	+	0	NA	intron (NM_145753, intron 2 of 16)	intron (NM_145753, intron 2 of 16)	32815	NM_001134439	90102	Hs.679140	XM_005247870	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
97	chr1	157961966	158047774	+	0	NA	intron (NM_001286349, intron 1 of 12)	intron (NM_001286349, intron 1 of 12)	41807	NM_018240	55243	Hs.657006	XM_005245305	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
12	chr1	207909891	207942237	+	0	NA	intron (NM_002389, intron 1 of 13)	intron (NM_002389, intron 1 of 13)	681	NM_172353	4179	Hs.510402	NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
41	chr17	76855823	76933056	+	0	NA	intron (NM_001243541, intron 2 of 2)	MIR|SINE|MIR	4860	NM_001243540	100653515	Hs.734636	XM_005256922	ENSG00000178404	LOC100653515	-	differential display clone 8	protein-coding
52	chr2	27184335	27259067	+	0	NA	intron (NM_012326, intron 1 of 6)	L3|LINE|CR1	28176	NM_012326	22924	Hs.515860	XM_005264214	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding
173	chr20	35082713	35122739	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	12584	NM_183006	22839	Hs.249600	XM_005260329	ENSG00000080845	DLGAP4	DAP4|DLP4|RP5-977B1.6|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
56	chr20	1870656	1911416	+	0	NA	intron (NM_080792, intron 2 of 8)	intron (NM_080792, intron 2 of 8)	15210	NM_001040023	140885	Hs.581021	XM_005260669	ENSG00000198053	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal-regulatory protein alpha	protein-coding
45	chr18	45369248	45472562	+	0	NA	intron (NM_001003652, intron 2 of 10)	intron (NM_001003652, intron 2 of 10)	36065	NM_005901	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
66	chr3	159815899	159863994	+	0	NA	intron (NR_108088, intron 3 of 9)	L1MA2|LINE|L1	84933	NR_108088	101928376	Hs.565865	XR_241609	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
19	chr10	73714994	73770258	+	0	NA	intron (NM_004273, intron 1 of 2)	MIRb|SINE|MIR	18506	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
54	chr2	91936833	91966355	+	0	NA	Intergenic	Intergenic	-11774	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
70	chr5	60893904	60955485	+	0	NA	Intergenic	L1PA7|LINE|L1	-8942	NM_173667	285668	Hs.683866	NM_173667	ENSG00000178722	C5orf64	-	chromosome 5 open reading frame 64	protein-coding
68	chr4	129471461	129528390	+	0	NA	Intergenic	Intergenic	-230853	NM_199320	79960	Hs.12420	XM_005263229	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
166	chr2	234283952	234404567	+	0	NA	intron (NM_003648, intron 4 of 28)	MER58B|DNA|hAT-Charlie	47459	NM_003648	8527	Hs.471675	XM_005246107	ENSG00000077044	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
1	chr1	7322048	7407182	+	0	NA	intron (NM_015215, intron 5 of 22)	L1M5|LINE|L1	-466714	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
136	chr5	149994870	150041375	+	0	NA	intron (NM_001166208, intron 2 of 2)	intron (NM_001166208, intron 2 of 2)	-2085	NM_001109974	11346	Hs.435228	XM_005268368	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
88	chr9	100953267	101020343	+	0	NA	intron (NM_001267571, intron 5 of 12)	AluJb|SINE|Alu	4694	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA mir-6854	ncRNA
116	chr2	54746807	54900971	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	38358	NM_178313	6711	Hs.705692	XM_005264517	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
144	chr1	169071514	169121251	+	0	NA	intron (NM_001677, intron 3 of 5)	intron (NM_001677, intron 3 of 5)	20435	NM_001677	481	Hs.291196	XM_005245213	ENSG00000143153	ATP1B1	ATP1B	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
141	chr7	134187293	134299893	+	0	NA	intron (NM_001080538, intron 2 of 11)	HERVI-int|LTR|ERV1	9744	NM_001080538	441282	Hs.729418	XM_005250364	ENSG00000227471	AKR1B15	AKR1B10L	aldo-keto reductase family 1, member B15	protein-coding
30	chr14	65092113	65151321	+	0	NA	Intergenic	Intergenic	-49476	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
100	chr10	5293286	5337787	+	0	NA	Intergenic	Intergenic	76738	NM_001818	1109	Hs.567245	NM_001818	ENSG00000198610	AKR1C4	3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA	aldo-keto reductase family 1, member C4	protein-coding
25	chr12	57907952	57946998	+	0	NA	intron (NM_001261412, intron 7 of 13)	AluY|SINE|Alu	10816	NM_052897	114785	Hs.524523	XM_005268617	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
128	chr22	37560178	37598371	+	0	NA	intron (NM_182486, intron 2 of 3)	MIRc|SINE|MIR	5056	NM_182486	114904	Hs.22011	XM_005261325	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
28	chr12	122580569	122617504	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-53230	NM_152759	254050	Hs.374856	XR_242953	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
120	chr20	4837908	4990212	+	0	NA	intron (NM_203327, intron 2 of 16)	AluSz|SINE|Alu	68085	NM_005116	9962	Hs.516866	XM_005260901	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
156	chr15	86120959	86163390	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-21007	NM_001270546	11214	Hs.710656	XM_005254839	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
134	chr5	175223890	175317844	+	0	NA	intron (NM_006650, intron 2 of 4)	intron (NM_006650, intron 2 of 4)	-27634	NM_001008220	10814	Hs.193235	XM_005265798	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
40	chr17	60854950	60903192	+	0	NA	exon (NM_001100875, exon 2 of 11)	exon (NM_001100875, exon 2 of 11)	4943	NM_001100875	162333	Hs.665663	XM_005257095	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
75	chr5	82766260	82824639	+	0	NA	intron (NM_004385, intron 5 of 14)	intron (NM_004385, intron 5 of 14)	27956	NM_001164098	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
83	chr7	23311636	23399461	+	0	NA	intron (NM_006547, intron 12 of 14)	intron (NM_006547, intron 12 of 14)	16608	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
59	chr20	56564745	56601502	+	0	NA	Intergenic	Intergenic	112673	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	-	microRNA 4532	ncRNA
177	chr3	46964699	47022680	+	0	NA	intron (NM_001277074, intron 1 of 6)	intron (NM_001277074, intron 1 of 6)	24302	NR_102269	151903	Hs.745081	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
150	chr10	4973513	5091409	+	0	NA	intron (NM_001354, intron 10 of 10)	intron (NM_001354, intron 10 of 10)	13745	NM_001135241	1646	Hs.734597	XM_005252370	ENSG00000151632	AKR1C2	AKR1C-pseudo|BABP|DD|DD2|DDH2|HAKRD|HBAB|MCDR2|SRXY8	aldo-keto reductase family 1, member C2	protein-coding
155	chr15	89630217	89692230	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	29842	NM_152924	11057	Hs.122337	XM_005254832	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
130	chr4	140932625	141077019	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	70411	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
53	chr2	30447433	30526091	+	0	NA	Intergenic	AluY|SINE|Alu	32365	NM_030915	81606	Hs.593113	NM_030915	ENSG00000213626	LBH	-	limb bud and heart development	protein-coding
122	chr20	34604176	34805936	+	0	NA	intron (NM_001258329, intron 2 of 22)	intron (NM_001258329, intron 2 of 22)	24424	NM_177996	2036	Hs.437422	XM_005260318	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
143	chr1	94040968	94172155	+	0	NA	intron (NM_001261408, intron 5 of 13)	MER91C|DNA|hAT-Tip100	-26859	NM_001261410	8412	Hs.36958	XM_005271251	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
158	chr16	87857127	87906581	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-13588	NR_106833	102465464		NR_106833		MIR6775	hsa-mir-6775	microRNA mir-6775	ncRNA
42	chr17	77801705	77827499	+	0	NA	Intergenic	CpG	-1389	NM_003655	8535	Hs.405046	XM_005257753	ENSG00000141582	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
22	chr11	122263950	122313356	+	0	NA	Intergenic	MER39B|LTR|ERV1	-214883	NR_024430	399959	Hs.732590	XR_246434	ENSG00000255248	MIR100HG	AGD1|RP11-166D19.1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
46	chr18	45510959	45558067	+	0	NA	Intergenic	Intergenic	-76996	NM_001003652	4087	Hs.741342	XM_005258259	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
13	chr1	225995884	226071596	+	0	NA	TTS (NM_000120)	TTS (NM_000120)	20738	NM_000120	2052	Hs.89649	XM_005273085	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1, microsomal (xenobiotic)	protein-coding
105	chr14	65165254	65233906	+	0	NA	exon (NM_015549, exon 10 of 15)	exon (NM_015549, exon 10 of 15)	28387	NM_015549	26030	Hs.509637	XM_005267511	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
6	chr1	151507580	151598166	+	0	NA	intron (NM_020127, intron 11 of 12)	AluJr|SINE|Alu	-31789	NM_030918	81609	Hs.192326	XM_005245509	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
85	chr8	71468655	71531311	+	0	NA	intron (NM_014294, intron 6 of 10)	intron (NM_014294, intron 6 of 10)	20711	NM_014294	23471	Hs.491988	XM_005251188	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
185	chr6	160768021	160822017	+	0	NA	intron (NM_021977, intron 1 of 10)	L1PA7|LINE|L1	25614	NM_021977	6581	Hs.567337	XM_005267106	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 (organic cation transporter), member 3	protein-coding
36	chr16	50203344	50299793	+	0	NA	exon (NM_001040284, exon 6 of 13)	exon (NM_001040284, exon 6 of 13)	-48883	NM_001286057	113	Hs.513578	XM_005255779	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
3	chr1	68148335	68236818	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	41716	NM_001924	1647	Hs.80409	NM_001199741	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
183	chr6	126210079	126279789	+	0	NA	intron (NM_001199621, intron 12 of 14)	intron (NM_001199621, intron 12 of 14)	4564	NM_001199622	135112	Hs.171426	XM_005266822	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
94	chr1	207175793	207230204	+	0	NA	intron (NM_023938, intron 1 of 3)	intron (NM_023938, intron 1 of 3)	3103	NM_023938	79098	Hs.32417	XM_005273258	ENSG00000182795	C1orf116	SARG	chromosome 1 open reading frame 116	protein-coding
146	chr1	207175827	207227444	+	0	NA	intron (NM_023938, intron 1 of 3)	intron (NM_023938, intron 1 of 3)	4466	NM_023938	79098	Hs.32417	XM_005273258	ENSG00000182795	C1orf116	SARG	chromosome 1 open reading frame 116	protein-coding
51	chr2	234574473	234684341	+	0	NA	intron (NM_007120, intron 1 of 4)	AluSx3|SINE|Alu	1969	NM_007120	54657	Hs.554822	NM_007120	ENSG00000244474	UGT1A4	HUG-BR2|UDPGT|UDPGT 1-4|UGT-1D|UGT1-04|UGT1.4|UGT1D	UDP glucuronosyltransferase 1 family, polypeptide A4	protein-coding
9	chr1	225920960	225971667	+	0	NA	Intergenic	Intergenic	-19202	NM_003133	6726	Hs.706900	NM_001130440	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9kDa	protein-coding
111	chr17	56413370	56496460	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	-25316	NR_073470	6827	Hs.718477	NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H	suppressor of Ty 4 homolog 1 (S. cerevisiae)	protein-coding
38	chr17	77957848	78011490	+	0	NA	intron (NM_019020, intron 2 of 11)	intron (NM_019020, intron 2 of 11)	24988	NM_019020	125058	Hs.369819	XM_005257049	ENSG00000167291	TBC1D16	-	TBC1 domain family, member 16	protein-coding
4	chr1	21577481	21673422	+	0	NA	non-coding (NR_038404, exon 3 of 3)	non-coding (NR_038404, exon 3 of 3)	5668	NR_038404	100506801	Hs.663049	NR_038404	ENSG00000231105	RP5-1071N3.1	-	uncharacterized LOC100506801	ncRNA
34	chr15	69814557	69896625	+	0	NA	non-coding (NR_026979, exon 2 of 5)	non-coding (NR_026979, exon 2 of 5)	1532	NR_026979	145837	Hs.737088	XR_243079		RP11-279F6.1	-	uncharacterized LOC145837	ncRNA
169	chr20	17510672	17599204	+	0	NA	intron (NM_006870, intron 1 of 3)	intron (NM_006870, intron 1 of 3)	4339	NM_001011546	11034	Hs.705996	XM_005260653	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin (actin depolymerizing factor)	protein-coding
164	chr2	54750244	54868096	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	23639	NM_178313	6711	Hs.705692	XM_005264517	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
132	chr5	131626825	131774370	+	0	NA	TTS (NR_037500)	TTS (NR_037500)	694	NR_037500	100500865		NR_037500	ENSG00000263597	MIR3936	-	microRNA 3936	ncRNA
171	chr20	56228190	56294816	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	4177	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding