PeakID (cmd=annotatePeaks.pl BL4000_DMS79_H187_peaks.common.exclusive.peaks.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 1801 chr17 4135432 4136328 + 0 NA intron (NR_047571, intron 2 of 23) intron (NR_047571, intron 2 of 23) 31262 NM_001257999 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 3074 chr4 3175974 3176773 + 0 NA intron (NM_002111, intron 31 of 66) intron (NM_002111, intron 31 of 66) -69723 NM_001330620 345222 Hs.442291 NM_001012982 ENSG00000188981 MSANTD1 C4orf44 Myb/SANT DNA binding domain containing 1 protein-coding 3509 chr5 154851910 154852644 + 0 NA Intergenic Intergenic 458962 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 3163 chr4 81634362 81635179 + 0 NA intron (NM_001206997, intron 4 of 6) MIR|SINE|MIR -317349 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 1178 chr13 50723422 50724190 + 0 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) -22348 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 pseudo 4628 chr9_gl000198_random 36 1609 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 1387 chr14 53874782 53876042 + 0 NA Intergenic Intergenic 255340 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 1932 chr18 8288287 8289160 + 0 NA intron (NM_001105244, intron 19 of 32) intron (NM_001105244, intron 19 of 32) 78309 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 458 chr10 42817262 42818360 + 0 NA Intergenic ALR/Alpha|Satellite|centr 45682 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 2634 chr20 20721833 20722899 + 0 NA Intergenic Intergenic -29100 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 1785 chr16 78617212 78618149 + 0 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 484370 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 4361 chr8 99903814 99904734 + 0 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 50525 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 1250 chr13 101804216 101805976 + 0 NA intron (NM_052867, intron 15 of 43) intron (NM_052867, intron 15 of 43) -208478 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 2507 chr2 201254179 201254949 + 0 NA intron (NM_001100423, intron 3 of 12) intron (NM_001100423, intron 3 of 12) 80891 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 3957 chr7 67647899 67649010 + 0 NA Intergenic Intergenic 163214 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 1630 chr15 69441738 69442472 + 0 NA intron (NR_031680, intron 3 of 4) intron (NR_031680, intron 3 of 4) -10831 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 3497 chr5 153434211 153435001 + 0 NA 3' UTR (NM_001135037, exon 2 of 2) 3' UTR (NM_001135037, exon 2 of 2) 16087 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibrillar associated protein 3 protein-coding 4340 chr8 92266772 92267977 + 0 NA intron (NM_001282356, intron 3 of 19) intron (NM_001282356, intron 3 of 19) 5858 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 3185 chr4 91985220 91986171 + 0 NA intron (NM_001145065, intron 9 of 10) MER68B|LTR|ERVL 829513 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 3109 chr4 25729176 25730350 + 0 NA Intergenic Intergenic 71677 NM_001177999 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 3919 chr7 33431670 33432511 + 0 NA intron (NM_001033604, intron 18 of 21) MLT1H|LTR|ERVL-MaLR 262938 NM_014451 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 728 chr11 92899183 92899872 + 0 NA intron (NM_152313, intron 7 of 10) intron (NM_152313, intron 7 of 10) 31094 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 1244 chr13 101160407 101161766 + 0 NA intron (NM_001178004, intron 21 of 22) intron (NM_001178004, intron 21 of 22) 24970 NM_033110 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 1638 chr15 70632073 70632978 + 0 NA Intergenic Intergenic -242269 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 3936 chr7 45881151 45882173 + 0 NA Intergenic L1ME2z|LINE|L1 -46297 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 29 chr1 14261492 14262305 + 0 NA Intergenic MIR|SINE|MIR 186022 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 350 chr1 204704011 204704843 + 0 NA Intergenic L2c|LINE|L2 -49830 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 4087 chr7 116728316 116729677 + 0 NA intron (NR_109980, intron 1 of 4) intron (NR_109980, intron 1 of 4) 1839 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 1969 chr18 32718468 32719151 + 0 NA intron (NM_001143827, intron 7 of 7) intron (NM_001143827, intron 7 of 7) 97195 NR_046177 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 1810 chr17 27011061 27012566 + 0 NA intron (NM_001320755, intron 19 of 37) intron (NM_001320755, intron 19 of 37) 22597 NM_001320755 6830 Hs.250429 NM_003170 ENSG00000109111 SUPT6H SPT6|SPT6H|emb-5 SPT6 homolog, histone chaperone protein-coding 2203 chr2 33512765 33513521 + 0 NA intron (NM_001166266, intron 15 of 28) intron (NM_001166266, intron 15 of 28) -130440 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 4358 chr8 98566842 98567861 + 0 NA Intergenic FRAM|SINE|Alu -89056 NM_178812 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 2754 chr21 43117289 43118093 + 0 NA TTS (NR_024367) TTS (NR_024367) 18229 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 1546 chr14 95716210 95717653 + 0 NA intron (NM_024734, intron 1 of 12) intron (NM_024734, intron 1 of 12) 69314 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 2994 chr3 140956488 140959049 + 0 NA intron (NM_152282, intron 3 of 7) Tigger2a|DNA|TcMar-Tigger 7101 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 4003 chr7 78386953 78388305 + 0 NA intron (NM_001301128, intron 2 of 20) L2a|LINE|L2 -250675 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 3256 chr4 170919813 170920825 + 0 NA intron (NM_001301647, intron 1 of 1) intron (NM_001301647, intron 1 of 1) 4624 NM_001301648 9848 Hs.593942 NM_021647 ENSG00000198948 MFAP3L NYD-sp9 microfibrillar associated protein 3 like protein-coding 311 chr1 181708481 181709958 + 0 NA intron (NM_001205294, intron 24 of 45) intron (NM_001205294, intron 24 of 45) 256533 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 4537 chr9 72989701 72990586 + 0 NA Intergenic Intergenic 39430 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 3844 chr6 158137408 158138265 + 0 NA Intergenic Intergenic -106367 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 825 chr11 129203392 129204307 + 0 NA Intergenic LTR88b|LTR|Gypsy? -42032 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 917 chr12 50379530 50380405 + 0 NA Intergenic Intergenic 13347 NM_001652 363 Hs.54505 NM_001652 ENSG00000086159 AQP6 AQP2L|KID aquaporin 6 protein-coding 3431 chr5 121829288 121830280 + 0 NA Intergenic L2b|LINE|L2 -15002 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 495 chr10 89966788 89967582 + 0 NA Intergenic L1MC|LINE|L1 343990 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 phosphatase and tensin homolog protein-coding 4501 chr9 17707563 17709029 + 0 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 129344 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 3889 chr7 24367067 24368216 + 0 NA Intergenic Intergenic 43834 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 3302 chr5 8383273 8384026 + 0 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 74028 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LOC729506 - uncharacterized LOC729506 ncRNA 2086 chr19 30086798 30088168 + 0 NA Intergenic Intergenic -9687 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 1322 chr14 27404748 27405679 + 0 NA Intergenic Intergenic 27365 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 1816 chr17 30953838 30954674 + 0 NA intron (NM_001303279, intron 20 of 21) intron (NM_001303279, intron 20 of 21) 140151 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 2460 chr2 166800822 166801541 + 0 NA intron (NM_024753, intron 4 of 28) intron (NM_024753, intron 4 of 28) 9167 NM_024753 79809 Hs.310672 NM_024753 ENSG00000123607 TTC21B ATD4|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1 tetratricopeptide repeat domain 21B protein-coding 4293 chr8 43820665 43838890 + 0 NA Intergenic ALR/Alpha|Satellite|centr 682192 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 2699 chr21 10856508 10857276 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 134051 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 1259 chr13 102691297 102692085 + 0 NA intron (NM_001321945, intron 2 of 5) intron (NM_001321945, intron 2 of 5) 6663 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 3824 chr6 150496854 150497694 + 0 NA intron (NM_030949, intron 1 of 3) intron (NM_030949, intron 1 of 3) 33086 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 3574 chr6 14648179 14648990 + 0 NA Intergenic Intergenic -362899 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 2976 chr3 134990523 134991293 + 0 NA Intergenic Intergenic 476809 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 3475 chr5 143447070 143447958 + 0 NA Intergenic Intergenic 102764 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 4319 chr8 80955434 80956278 + 0 NA intron (NR_105035, intron 5 of 6) MER5A|DNA|hAT-Charlie -13350 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 3421 chr5 110920558 110921231 + 0 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -72599 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 3238 chr4 151203128 151204177 + 0 NA exon (NM_001199282, exon 55 of 57) exon (NM_001199282, exon 55 of 57) 204226 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 2274 chr2 58107748 58108776 + 0 NA Intergenic Intergenic -26524 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 2002 chr18 42997823 42998695 + 0 NA intron (NM_001242692, intron 1 of 20) L2c|LINE|L2 88742 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 4591 chr9 114681771 114682738 + 0 NA intron (NM_003358, intron 2 of 8) intron (NM_003358, intron 2 of 8) -12126 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 1203 chr13 79316570 79317410 + 0 NA Intergenic Intergenic -83676 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 RNF219 C13orf7 ring finger protein 219 protein-coding 4261 chr8 28569581 28570362 + 0 NA intron (NR_073468, intron 1 of 4) L2b|LINE|L2 10981 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 2088 chr19 32815435 32816290 + 0 NA Intergenic Intergenic -20652 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 1068 chr12 115351494 115352783 + 0 NA Intergenic Intergenic -230169 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 4429 chr8 135252662 135253936 + 0 NA Intergenic Intergenic 354560 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 486 chr10 80288830 80289744 + 0 NA Intergenic Intergenic 262202 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 2134 chr2 3448934 3450398 + 0 NA intron (NM_016030, intron 6 of 11) intron (NM_016030, intron 6 of 11) 66220 NM_016030 51112 Hs.252713 NM_016030 ENSG00000171853 TRAPPC12 CGI-87|TTC-15|TTC15 trafficking protein particle complex 12 protein-coding 1354 chr14 37210556 37211477 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 84243 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 4066 chr7 109745118 109746027 + 0 NA Intergenic Intergenic -145302 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 4213 chr8 3807392 3808312 + 0 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1044476 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 8 chr1 5830954 5831927 + 0 NA Intergenic Intergenic 91361 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 3239 chr4 151287410 151288451 + 0 NA intron (NM_006726, intron 48 of 57) intron (NM_006726, intron 48 of 57) -215147 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14 mab-21 like 2 protein-coding 2359 chr2 98381886 98383002 + 0 NA intron (NM_015348, intron 35 of 40) intron (NM_015348, intron 35 of 40) 31575 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 2045 chr18 61283460 61285459 + 0 NA Intergenic MER67C|LTR|ERV1 27094 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 686 chr11 74352199 74353126 + 0 NA non-coding (NR_046409, exon 11 of 11) non-coding (NR_046409, exon 11 of 11) 49012 NR_046410 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 3149 chr4 75798519 75799879 + 0 NA Intergenic Intergenic -59086 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 943 chr12 72483187 72484549 + 0 NA Intergenic Intergenic 151242 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 1887 chr17 57046155 57047155 + 0 NA intron (NM_014906, intron 3 of 6) intron (NM_014906, intron 3 of 6) 137627 NM_001320988 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 4258 chr8 27815217 27816003 + 0 NA intron (NM_173833, intron 3 of 8) intron (NM_173833, intron 3 of 8) 34759 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 1585 chr15 36760757 36761925 + 0 NA Intergenic Intergenic -110463 NM_001321756 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 4709 chrX 110852239 110853497 + 0 NA Intergenic Intergenic -71478 NM_018466 79868 Hs.443061 NM_018466 ENSG00000101901 ALG13 CDG1S|CXorf45|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W ALG13, UDP-N-acetylglucosaminyltransferase subunit protein-coding 4474 chr9 8608739 8609848 + 0 NA intron (NM_001040712, intron 3 of 29) intron (NM_001040712, intron 3 of 29) 124653 NM_001171025 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type D protein-coding 2705 chr21 17828046 17829144 + 0 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 35980 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 690 chr11 75345301 75347836 + 0 NA intron (NM_207577, intron 1 of 2) intron (NM_207577, intron 1 of 2) 32911 NM_207577 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 61 chr1 25813091 25813760 + 0 NA intron (NM_018202, intron 8 of 10) intron (NM_018202, intron 8 of 10) 56076 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 TMEM57 MACOILIN transmembrane protein 57 protein-coding 4475 chr9 8621432 8622273 + 0 NA intron (NM_001040712, intron 3 of 29) intron (NM_001040712, intron 3 of 29) 112094 NM_001171025 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type D protein-coding 4094 chr7 124761946 124762660 + 0 NA intron (NR_125718, intron 7 of 10) intron (NR_125718, intron 7 of 10) -62320 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000237764 LOC101928283 - uncharacterized LOC101928283 ncRNA 3540 chr5 168366798 168367504 + 0 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -73081 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 4704 chrX 109918956 109919821 + 0 NA 3' UTR (NM_001143982, exon 12 of 12) 3' UTR (NM_001143982, exon 12 of 12) 119688 NM_145234 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 2394 chr2 125300318 125301047 + 0 NA intron (NM_130773, intron 10 of 23) intron (NM_130773, intron 10 of 23) 517818 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1266 chr13 103329311 103329989 + 0 NA intron (NM_001330588, intron 29 of 29) intron (NM_001330588, intron 29 of 29) 17221 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 3419 chr5 110783202 110784147 + 0 NA intron (NM_001323374, intron 7 of 11) intron (NM_001323374, intron 7 of 11) -64250 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 3326 chr5 38540046 38541038 + 0 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 16206 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 2654 chr20 42924322 42925109 + 0 NA Intergenic MIRc|SINE|MIR 15177 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 4209 chr8 3503923 3504960 + 0 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -918450 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 4144 chr7 133214518 133215786 + 0 NA intron (NM_021807, intron 9 of 17) Tigger3a|DNA|TcMar-Tigger 239517 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 3627 chr6 24919325 24920560 + 0 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -8544 NM_001346031 9750 Hs.559459 NM_014722 ENSG00000111913 FAM65B C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65 member B protein-coding 39 chr1 18249695 18250600 + 0 NA Intergenic Intergenic -142004 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 558 chr11 9069436 9070011 + 0 NA intron (NM_001330199, intron 13 of 21) intron (NM_001330199, intron 13 of 21) 42203 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 3200 chr4 113987005 113987823 + 0 NA intron (NM_001148, intron 1 of 45) intron (NM_001148, intron 1 of 45) 16629 NM_001148 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 573 chr11 12849388 12850537 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 153993 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 2710 chr21 18897376 18898349 + 0 NA intron (NM_001207063, intron 1 of 4) intron (NM_001207063, intron 1 of 4) 12638 NM_001207063 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR coxsackie virus and adenovirus receptor protein-coding 1084 chr12 119396143 119396932 + 0 NA Intergenic Intergenic -22763 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 4570 chr9 97182210 97182778 + 0 NA intron (NM_032558, intron 2 of 11) intron (NM_032558, intron 2 of 11) 45661 NM_032558 84641 Hs.555996 NM_032558 ENSG00000148110 MFSD14B HIATL1 major facilitator superfamily domain containing 14B protein-coding 3446 chr5 126436958 126437810 + 0 NA Intergenic L2c|LINE|L2 -28200 NM_001164479 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 638 chr11 27984655 27985497 + 0 NA Intergenic Intergenic -93286 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 2350 chr2 92305130 92326248 + 0 NA Intergenic ALR/Alpha|Satellite|centr 186530 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 2479 chr2 175891952 175892863 + 0 NA Intergenic L3|LINE|CR1 -22300 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 1 chr1 3826220 3827162 + 0 NA intron (NR_024455, intron 2 of 3) intron (NR_024455, intron 2 of 3) 9723 NR_024455 100133612 Hs.307652 NR_024455 ENSG00000236423 LINC01134 - long intergenic non-protein coding RNA 1134 ncRNA 3218 chr4 130315479 130316960 + 0 NA Intergenic Intergenic 298937 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 506 chr10 98308168 98309057 + 0 NA intron (NM_020123, intron 7 of 14) intron (NM_020123, intron 7 of 14) -34929 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 4184 chr7 152374559 152375737 + 0 NA Intergenic Intergenic -1898 NM_005431 7516 Hs.647093 NM_005431 ENSG00000196584 XRCC2 FANCU X-ray repair cross complementing 2 protein-coding 2937 chr3 125604390 125605517 + 0 NA promoter-TSS (NR_125395) promoter-TSS (NR_125395) -33 NR_125395 101927056 Hs.744344 NR_125395 ENSG00000241288 LOC101927056 - uncharacterized LOC101927056 ncRNA 661 chr11 47485623 47486774 + 0 NA Intergenic Intergenic -15468 NM_005055 5913 Hs.81218 NM_005055 ENSG00000165917 RAPSN CMS11|CMS4C|FADS|RAPSYN|RNF205 receptor associated protein of the synapse protein-coding 3157 chr4 78935694 78936553 + 0 NA Intergenic Intergenic -42601 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 - Fraser extracellular matrix complex subunit 1 protein-coding 2845 chr3 56053108 56054146 + 0 NA intron (NM_015576, intron 7 of 16) intron (NM_015576, intron 7 of 16) -167005 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 2482 chr2 177331534 177332436 + 0 NA Intergenic Intergenic 133795 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 2719 chr21 35315308 35316584 + 0 NA intron (NR_038883, intron 1 of 2) MIR|SINE|MIR 12428 NR_134558 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 1935 chr18 10797502 10798341 + 0 NA intron (NM_022068, intron 11 of 51) MLT1F2|LTR|ERVL-MaLR -38274 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 2690 chr21 10708658 10713630 + 0 NA Intergenic ALR/Alpha|Satellite|centr 279799 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 581 chr11 13351211 13352683 + 0 NA intron (NM_001297719, intron 3 of 19) intron (NM_001297719, intron 3 of 19) 52673 NM_001297722 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 2727 chr21 36599540 36600637 + 0 NA Intergenic Intergenic -178493 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 4046 chr7 105313360 105314959 + 0 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) 5450 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 4676 chrX 19531279 19531848 + 0 NA intron (NM_001001671, intron 1 of 28) intron (NM_001001671, intron 1 of 28) 1816 NM_001001671 389840 Hs.713701 NM_001001671 ENSG00000180815 MAP3K15 ASK3|bA723P2.3 mitogen-activated protein kinase kinase kinase 15 protein-coding 4200 chr8 413635 414291 + 0 NA intron (NM_183420, intron 9 of 9) AluJb|SINE|Alu 57155 NM_183421 26260 Hs.438454 NM_012173 ENSG00000147364 FBXO25 FBX25 F-box protein 25 protein-coding 4567 chr9 93568748 93569892 + 0 NA intron (NM_001174168, intron 1 of 12) intron (NM_001174168, intron 1 of 12) 5111 NM_001174168 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 678 chr11 65332483 65333593 + 0 NA Intergenic Intergenic 4846 NR_038923 254100 Hs.595927 NR_038923 SSSCA1-AS1 - SSSCA1 antisense RNA 1 (head to head) ncRNA 4328 chr8 82234346 82235636 + 0 NA Intergenic MER67C|LTR|ERV1 42273 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 3862 chr6 170813315 170814166 + 0 NA Intergenic Intergenic 48677 NM_002793 5689 Hs.352768 NM_002793 ENSG00000008018 PSMB1 HC5|PMSB1|PSC5 proteasome subunit beta 1 protein-coding 1517 chr14 85026479 85027308 + 0 NA Intergenic MER52-int|LTR|ERV1 -826726 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 2808 chr3 10471550 10472328 + 0 NA intron (NM_001330611, intron 2 of 21) Tigger1|DNA|TcMar-Tigger -35693 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 3025 chr3 170553154 170553726 + 0 NA Intergenic Intergenic 34605 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 1975 chr18 35083879 35085002 + 0 NA intron (NM_001025087, intron 1 of 12) intron (NM_001025087, intron 1 of 12) -37973 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 2910 chr3 115134655 115135953 + 0 NA Intergenic Intergenic -206847 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 1973 chr18 34235856 34236658 + 0 NA intron (NM_001281740, intron 13 of 28) intron (NM_001281740, intron 13 of 28) 7124 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 1991 chr18 39252247 39253297 + 0 NA Intergenic Intergenic -152211 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 927 chr12 63151125 63152085 + 0 NA intron (NM_020700, intron 4 of 9) intron (NM_020700, intron 4 of 9) 154139 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 3180 chr4 89921951 89923861 + 0 NA intron (NM_014883, intron 3 of 23) intron (NM_014883, intron 3 of 23) 55440 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 2302 chr2 67312891 67313506 + 0 NA promoter-TSS (NR_110564) promoter-TSS (NR_110564) -380 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 3849 chr6 158888732 158889670 + 0 NA intron (NM_001007466, intron 6 of 12) LTR22B|LTR|ERVK -68267 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 2745 chr21 41703076 41704425 + 0 NA intron (NM_001389, intron 8 of 32) intron (NM_001389, intron 8 of 32) -51260 NR_038898 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 652 chr11 36243793 36245545 + 0 NA intron (NM_001304264, intron 4 of 5) intron (NM_001304264, intron 4 of 5) 66330 NM_001101653 29099 Hs.279836 NM_014186 ENSG00000110442 COMMD9 HSPC166 COMM domain containing 9 protein-coding 2400 chr2 130375722 130377581 + 0 NA Intergenic Intergenic -304099 NR_110285 101927924 Hs.570248 NR_110285 ENSG00000237574 LINC01856 - long intergenic non-protein coding RNA 1856 ncRNA 2034 chr18 55647622 55648427 + 0 NA Intergenic Intergenic -63586 NM_015277 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 4445 chr8 140966599 140967468 + 0 NA intron (NM_031466, intron 19 of 22) intron (NM_031466, intron 19 of 22) 143601 NR_144431 359809 Hs.26814 NR_144431 PEG13 - paternally expressed 13 ncRNA 4405 chr8 125054536 125055218 + 0 NA intron (NM_001039112, intron 20 of 40) intron (NM_001039112, intron 20 of 40) -1854 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 3851 chr6 160401958 160402830 + 0 NA intron (NM_000876, intron 1 of 47) (TG)n|Simple_repeat|Simple_repeat 12263 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 2029 chr18 54827646 54828708 + 0 NA Intergenic Intergenic 13884 NM_001257964 284257 Hs.127882 NM_001257964 ENSG00000228075 BOD1L2 BOD1P|FAM44C biorientation of chromosomes in cell division 1 like 2 protein-coding 3552 chr5 175610336 175611225 + 0 NA intron (NR_036494, intron 4 of 25) intron (NR_036494, intron 4 of 25) 15518 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 844 chr12 3807620 3808439 + 0 NA intron (NM_032680, intron 3 of 10) intron (NM_032680, intron 3 of 10) 54337 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 4447 chr8 141181741 141183149 + 0 NA intron (NM_031466, intron 17 of 22) intron (NM_031466, intron 17 of 22) -71811 NR_144431 359809 Hs.26814 NR_144431 PEG13 - paternally expressed 13 ncRNA 4552 chr9 85071688 85072754 + 0 NA Intergenic Intergenic 468534 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 2723 chr21 35974610 35976514 + 0 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 10580 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 4218 chr8 4652906 4653858 + 0 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 198946 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 272 chr1 164110601 164111498 + 0 NA Intergenic Intergenic -417548 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 775 chr11 115195312 115196877 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -8202 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 2518 chr2 208254836 208256734 + 0 NA Intergenic Intergenic -121637 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 20 chr1 9852027 9853392 + 0 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 31875 NM_001009566 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 2376 chr2 108425944 108426946 + 0 NA intron (NR_126370, intron 2 of 4) intron (NR_126370, intron 2 of 4) 16138 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 1983 chr18 36033700 36034693 + 0 NA Intergenic Intergenic 797098 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 3100 chr4 24065002 24065844 + 0 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -173723 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 3787 chr6 124162064 124163835 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 37958 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 4304 chr8 61720039 61720837 + 0 NA intron (NM_017780, intron 6 of 37) intron (NM_017780, intron 6 of 37) 66620 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 3562 chr6 5709726 5710730 + 0 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) -14723 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 1627 chr15 66423384 66424598 + 0 NA intron (NM_032445, intron 1 of 22) MER103C|DNA|hAT-Charlie 91420 NR_036196 100422905 NR_036196 ENSG00000263512 MIR4311 - microRNA 4311 ncRNA 4180 chr7 147901680 147902503 + 0 NA intron (NM_014141, intron 18 of 23) MIRb|SINE|MIR 275406 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 4139 chr7 132341661 132342573 + 0 NA intron (NR_046323, intron 1 of 4) intron (NR_046323, intron 1 of 4) 8564 NR_046323 286023 Hs.671875 NM_173682 ENSG00000183470 FLJ40288 - uncharacterized FLJ40288 ncRNA 468 chr10 72572412 72573074 + 0 NA Intergenic Intergenic -2961 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 3030 chr3 171598485 171599699 + 0 NA intron (NR_046852, intron 2 of 2) L2b|LINE|L2 19438 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 1019 chr12 103941221 103942047 + 0 NA promoter-TSS (NR_110103) promoter-TSS (NR_110103) 62 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LOC101929084 - uncharacterized LOC101929084 ncRNA 700 chr11 78082476 78083614 + 0 NA intron (NM_080491, intron 1 of 9) MIRb|SINE|MIR -30119 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 78 chr1 37281693 37282566 + 0 NA intron (NM_000831, intron 13 of 15) intron (NM_000831, intron 13 of 15) 217715 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 3369 chr5 66276944 66278631 + 0 NA intron (NM_001290226, intron 1 of 26) intron (NM_001290226, intron 1 of 26) 22195 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 413 chr1 245618788 245619264 + 0 NA intron (NM_018012, intron 4 of 14) intron (NM_018012, intron 4 of 14) 300739 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 294 chr1 171579464 171580326 + 0 NA Intergenic MSTD|LTR|ERVL-MaLR 41878 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 764 chr11 113862708 113863798 + 0 NA Intergenic Intergenic 15031 NM_001161772 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 2075 chr19 13022115 13025086 + 0 NA intron (NM_001105578, intron 2 of 5) intron (NM_001105578, intron 2 of 5) 6486 NM_001105578 256126 Hs.655173 NM_001105578 ENSG00000161860 SYCE2 CESC1 synaptonemal complex central element protein 2 protein-coding 4582 chr9 107081310 107082648 + 0 NA Intergenic Intergenic 49469 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 1981 chr18 35801395 35802619 + 0 NA Intergenic Intergenic 564909 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 3638 chr6 36895033 36895930 + 0 NA 3' UTR (NM_001286636, exon 10 of 10) 3' UTR (NM_001286636, exon 10 of 10) -20558 NM_001199159 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 2081 chr19 21113198 21114524 + 0 NA intron (NR_045830, intron 1 of 3) AluSp|SINE|Alu 7802 NM_003429 7639 Hs.37138 NM_003429 ENSG00000105750 ZNF85 HPF4|HTF1 zinc finger protein 85 protein-coding 606 chr11 20465954 20466641 + 0 NA intron (NM_005788, intron 10 of 15) L1M5|LINE|L1 57221 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 4416 chr8 128253698 128254639 + 0 NA Intergenic Intergenic -2714 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 3559 chr6 1969721 1970876 + 0 NA intron (NM_001500, intron 4 of 10) intron (NM_001500, intron 4 of 10) 205927 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 2522 chr2 210443857 210444777 + 0 NA promoter-TSS (NM_031847) promoter-TSS (NM_031847) -86 NM_031847 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 1855 chr17 45282038 45283410 + 0 NA Intergenic Intergenic -3704 NM_001002841 4635 Hs.463300 NM_002476 ENSG00000198336 MYL4 ALC1|AMLC|GT1|PRO1957 myosin light chain 4 protein-coding 432 chr10 14632256 14633213 + 0 NA intron (NM_001282695, intron 2 of 5) AluSp|SINE|Alu 13683 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 4235 chr8 15577157 15578055 + 0 NA intron (NM_178234, intron 6 of 9) AluJr4|SINE|Alu 180010 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|N33|OST3A tumor suppressor candidate 3 protein-coding 2415 chr2 136722869 136723936 + 0 NA intron (NM_001349, intron 3 of 15) intron (NM_001349, intron 3 of 15) -19344 NR_110200 101928243 Hs.602178 NR_110199 ENSG00000231890 DARS-AS1 - DARS antisense RNA 1 ncRNA 708 chr11 79091755 79092899 + 0 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 20826 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 2583 chr20 3544417 3545334 + 0 NA intron (NM_139321, intron 10 of 28) L2c|LINE|L2 93210 NM_001207047 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 2589 chr20 5149348 5150224 + 0 NA intron (NM_003818, intron 1 of 12) intron (NM_003818, intron 1 of 12) 42379 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 3286 chr5 6342452 6343524 + 0 NA Intergenic Intergenic -5583 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 2814 chr3 16883940 16884699 + 0 NA Intergenic Intergenic -42133 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 710 chr11 82758336 82759363 + 0 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) -6209 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 1656 chr15 89632101 89633047 + 0 NA intron (NM_152924, intron 1 of 10) intron (NM_152924, intron 1 of 10) 1193 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 856 chr12 11991116 11992669 + 0 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 189104 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 1664 chr15 92415721 92416566 + 0 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 18613 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 112 chr1 50725923 50727698 + 0 NA Intergenic Intergenic 151522 NM_001324215 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 3211 chr4 129314248 129315070 + 0 NA Intergenic Intergenic -34512 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 191 chr1 107766796 107767499 + 0 NA intron (NM_001330665, intron 2 of 6) intron (NM_001330665, intron 2 of 6) 76456 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 4613 chr9 129178923 129179734 + 0 NA intron (NM_033446, intron 6 of 9) intron (NM_033446, intron 6 of 9) -6545 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-protein coding RNA, repressor of NFAT ncRNA 3612 chr6 23534079 23535276 + 0 NA Intergenic Intergenic -591737 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 588 chr11 15589888 15590684 + 0 NA Intergenic Intergenic -75145 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 1684 chr16 7043332 7044422 + 0 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 220067 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 756 chr11 111161433 111162388 + 0 NA Intergenic Intergenic -7361 NM_001271458 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 262 chr1 163023982 163026003 + 0 NA Intergenic Intergenic -13404 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G-protein signaling 4 protein-coding 1944 chr18 13394595 13395466 + 0 NA intron (NM_181481, intron 2 of 5) intron (NM_181481, intron 2 of 5) 32503 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 4422 chr8 131082242 131083163 + 0 NA intron (NM_001247996, intron 28 of 30) MER21-int|LTR|ERVL 14312 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 2590 chr20 5373754 5374706 + 0 NA Intergenic Intergenic 52164 NR_038240 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 542 chr10 129073855 129074768 + 0 NA intron (NM_001380, intron 29 of 51) intron (NM_001380, intron 29 of 51) -79889 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 FAM196A C10orf141|INSYN2 family with sequence similarity 196 member A protein-coding 3750 chr6 110155279 110156989 + 0 NA Intergenic Charlie1a|DNA|hAT-Charlie -81715 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 3114 chr4 37861837 37862619 + 0 NA intron (NM_018290, intron 13 of 13) intron (NM_018290, intron 13 of 13) -30477 NM_015173 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 4649 chrUn_gl000225 12718 14791 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 2099 chr19 42536294 42537336 + 0 NA intron (NM_002088, intron 11 of 18) L2a|LINE|L2 33142 NM_002088 2901 Hs.367799 NM_002088 ENSG00000105737 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate ionotropic receptor kainate type subunit 5 protein-coding 2476 chr2 173753405 173754518 + 0 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 29195 NM_001282899 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 2988 chr3 139924346 139926259 + 0 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 271275 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 170 chr1 88403156 88404468 + 0 NA Intergenic Intergenic -566474 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 1921 chr18 934216 935270 + 0 NA Intergenic Intergenic 29546 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 3217 chr4 130299313 130300284 + 0 NA Intergenic Intergenic 282516 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 26 chr1 11694503 11695443 + 0 NA Intergenic Intergenic -19459 NM_183412 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 2116 chr2 1127970 1128878 + 0 NA intron (NM_018968, intron 4 of 16) intron (NM_018968, intron 4 of 16) -181346 NR_136151 101060391 Hs.120377 NR_136151 LOC101060391 - uncharacterized LOC101060391 ncRNA 2250 chr2 50141117 50142141 + 0 NA Intergenic LTR16C|LTR|ERVL 59712 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 526 chr10 120522849 120523801 + 0 NA Intergenic Intergenic -8567 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 1901 chr17 71392272 71393262 + 0 NA intron (NM_001144952, intron 24 of 44) intron (NM_001144952, intron 24 of 44) -84624 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 3500 chr5 153474651 153475845 + 0 NA Intergenic Intergenic 56729 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibrillar associated protein 3 protein-coding 359 chr1 206628824 206629872 + 0 NA 3' UTR (NM_001300952, exon 18 of 18) 3' UTR (NM_001300952, exon 18 of 18) -14238 NM_001193321 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon protein-coding 1229 chr13 99053691 99054889 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 120089 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 2614 chr20 12771186 12772146 + 0 NA Intergenic MSTC|LTR|ERVL-MaLR 145945 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 2608 chr20 12151090 12153429 + 0 NA Intergenic L2a|LINE|L2 253746 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 1001 chr12 99130451 99131576 + 0 NA intron (NM_001204081, intron 9 of 9) intron (NM_001204081, intron 9 of 9) 91935 NM_001160 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 3694 chr6 61913829 61914725 + 0 NA Intergenic ALR/Alpha|Satellite|centr -369731 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 232 chr1 144999708 145001333 + 0 NA intron (NR_144517, intron 3 of 42) intron (NR_144517, intron 3 of 42) -3409 NM_001195260 9659 Hs.584841 NM_014644 ENSG00000178104 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 3458 chr5 136653674 136654698 + 0 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 180832 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 protein-coding 3054 chr3 186358174 186359966 + 0 NA intron (NM_014375, intron 2 of 6) intron (NM_014375, intron 2 of 6) 921 NM_014375 26998 Hs.81073 NM_014375 ENSG00000090512 FETUB 16G2|Gugu|IRL685 fetuin B protein-coding 1182 chr13 51276977 51277943 + 0 NA Intergenic L1ME1|LINE|L1 -104531 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000237152 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 225 chr1 119852528 119853716 + 0 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -58277 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 1447 chr14 71940544 71942208 + 0 NA Intergenic Intergenic -13202 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 142 chr1 73317121 73317835 + 0 NA Intergenic Intergenic -454375 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 207 chr1 113748412 113749605 + 0 NA promoter-TSS (NR_038846) promoter-TSS (NR_038846) -133 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 1510 chr14 82722467 82723508 + 0 NA Intergenic Intergenic -633582 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 48 chr1 19731423 19732697 + 0 NA intron (NM_004930, intron 2 of 8) intron (NM_004930, intron 2 of 8) 79141 NM_001282162 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line beta subunit protein-coding 4491 chr9 13992615 13994146 + 0 NA Intergenic Intergenic 65410 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 3641 chr6 37427399 37428434 + 0 NA intron (NM_015050, intron 10 of 23) intron (NM_015050, intron 10 of 23) 27009 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 3585 chr6 19311619 19313353 + 0 NA Intergenic Intergenic -131775 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 3170 chr4 82991290 82992074 + 0 NA Intergenic Intergenic 303467 NM_031369 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 1988 chr18 38068596 38070093 + 0 NA Intergenic Intergenic 423094 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 3923 chr7 39121876 39122889 + 0 NA intron (NM_001166018, intron 2 of 10) intron (NM_001166018, intron 2 of 10) -69215 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 4128 chr7 131287560 131288365 + 0 NA Intergenic Intergenic -46586 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 3730 chr6 98962350 98963259 + 0 NA Intergenic Intergenic -319776 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 3135 chr4 68263996 68266865 + 0 NA Intergenic ALR/Alpha|Satellite|centr 22288 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 4356 chr8 94729422 94730227 + 0 NA intron (NM_001283034, intron 5 of 6) intron (NM_001283034, intron 5 of 6) 17089 NR_104267 137392 Hs.125038 NM_145269 ENSG00000188343 FAM92A FAM92A1 family with sequence similarity 92 member A protein-coding 3665 chr6 43791708 43792851 + 0 NA Intergenic Intergenic 52557 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 4343 chr8 93169710 93170777 + 0 NA Intergenic L2a|LINE|L2 9496 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 4376 chr8 104267867 104269175 + 0 NA Intergenic Intergenic -42140 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 4243 chr8 20266498 20267518 + 0 NA Intergenic Intergenic 133724 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 659 chr11 46969801 46970416 + 0 NA intron (NM_001278222, intron 1 of 7) intron (NM_001278222, intron 1 of 7) 11868 NR_103472 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 2774 chr22 26753614 26754126 + 0 NA intron (NM_001184777, intron 12 of 14) intron (NM_001184777, intron 12 of 14) -71410 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 2763 chr21 46531389 46532369 + 0 NA intron (NM_001346688, intron 1 of 11) L1ME3B|LINE|L1 36913 NM_001346688 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase, RNA specific B1 protein-coding 1141 chr13 33943031 33944274 + 0 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -83751 NM_178006 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 984 chr12 97604682 97605593 + 0 NA Intergenic Intergenic -253662 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript (non-protein coding) ncRNA 1155 chr13 38101105 38101833 + 0 NA Intergenic Intergenic -7608 NR_040244 400121 Hs.558894 NR_040244 ENSG00000275226 LINC00547 - long intergenic non-protein coding RNA 547 ncRNA 3372 chr5 66563514 66565745 + 0 NA Intergenic Intergenic -72012 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 1485 chr14 79436695 79437761 + 0 NA intron (NM_001330195, intron 14 of 20) intron (NM_001330195, intron 14 of 20) -229097 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 788 chr11 117369057 117371013 + 0 NA intron (NM_020693, intron 11 of 32) intron (NM_020693, intron 11 of 32) 171464 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 128 chr1 60550160 60551128 + 0 NA Intergenic LTR88a|LTR|Gypsy? -11202 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 4115 chr7 127944023 127945096 + 0 NA non-coding (NR_046216, exon 1 of 1) non-coding (NR_046216, exon 1 of 1) 3257 NR_046216 157247 Hs.552129 NM_175880 MGC27345 - uncharacterized protein MGC27345 ncRNA 1313 chr14 21672317 21673761 + 0 NA non-coding (NR_038970, exon 1 of 1) non-coding (NR_038970, exon 1 of 1) 623 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 278 chr1 165611586 165612594 + 0 NA intron (NM_004528, intron 1 of 5) MIRb|SINE|MIR 11980 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 1617 chr15 61279700 61280491 + 0 NA intron (NM_134261, intron 1 of 10) MIRb|SINE|MIR 241407 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 3521 chr5 157214015 157214818 + 0 NA 3' UTR (NM_001195555, exon 12 of 12) 3' UTR (NM_001195555, exon 12 of 12) 43713 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 490 chr10 81911177 81911874 + 0 NA Intergenic Intergenic 19267 NM_001331125 219348 Hs.204947 NM_001012973 ENSG00000189129 PLAC9 - placenta specific 9 protein-coding 1843 chr17 36188773 36190225 + 0 NA Intergenic Intergenic 54864 NR_024178 284100 Hs.434159 NM_001129906 ENSG00000276715 YWHAEP7 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7 pseudo 2626 chr20 19307584 19308636 + 0 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -42870 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 1112 chr12 129862565 129863641 + 0 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 169957 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 LOC101927735 - uncharacterized LOC101927735 ncRNA 1294 chr13 110473319 110474121 + 0 NA Intergenic Intergenic -34806 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 461 chr10 49802321 49803868 + 0 NA intron (NR_045675, intron 2 of 10) intron (NR_045675, intron 2 of 10) 10082 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 2712 chr21 19010507 19011577 + 0 NA Intergenic Intergenic -25774 NM_001130914 10950 Hs.473420 NM_006806 ENSG00000154640 BTG3 ANA|APRO4|TOB5|TOB55|TOFA BTG anti-proliferation factor 3 protein-coding 1562 chr14 106481379 106482253 + 0 NA Intergenic MER89-int|LTR|ERV1 -43458 NR_002224 8755 Hs.662288 NR_002224 ENSG00000271968 ADAM6 C14orf96|tMDCIV ADAM metallopeptidase domain 6 (pseudogene) pseudo 1426 chr14 65190407 65191470 + 0 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 19812 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 3451 chr5 133245575 133246386 + 0 NA Intergenic Intergenic -3388 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 4640 chrUn_gl000216 10010 14158 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 1358 chr14 38878222 38879173 + 0 NA Intergenic Intergenic -153122 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain family 14 member A protein-coding 782 chr11 115906396 115907456 + 0 NA Intergenic Intergenic -276008 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 3647 chr6 38344225 38344903 + 0 NA intron (NM_001099272, intron 6 of 10) intron (NM_001099272, intron 6 of 10) -104808 NR_144472 101929425 Hs.665280 NR_144472 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 2281 chr2 59140847 59142666 + 0 NA intron (NR_033873, intron 4 of 13) intron (NR_033873, intron 4 of 13) -303087 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 1557 chr14 99861388 99862953 + 0 NA Intergenic Intergenic 85056 NM_032233 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154 SET domain containing 3 protein-coding 1486 chr14 79481932 79483927 + 0 NA intron (NM_001330195, intron 15 of 20) L2c|LINE|L2 -183396 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 425 chr10 11166853 11167632 + 0 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) -19791 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 2056 chr18 67302050 67302756 + 0 NA intron (NM_152721, intron 3 of 7) LTR16E2|LTR|ERVL 165236 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 3607 chr6 21348545 21349582 + 0 NA Intergenic Intergenic 163060 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 2876 chr3 97536466 97537857 + 0 NA Intergenic Intergenic -3723 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 3648 chr6 38773904 38774871 + 0 NA intron (NM_001206927, intron 23 of 92) intron (NM_001206927, intron 23 of 92) 91270 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 3428 chr5 115754573 115755475 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -28170 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 781 chr11 115836158 115837062 + 0 NA Intergenic Intergenic -205692 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 3015 chr3 160526147 160527077 + 0 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -33389 NM_001317912 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 1950 chr18 21589326 21590248 + 0 NA intron (NR_110796, intron 2 of 5) intron (NR_110796, intron 2 of 5) -4597 NM_001135993 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 2782 chr22 32175214 32175965 + 0 NA intron (NM_001007188, intron 8 of 21) L2|LINE|L2 24741 NM_014662 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 2037 chr18 57020349 57021158 + 0 NA intron (NM_005570, intron 4 of 12) MER5B|DNA|hAT-Charlie 5755 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 532 chr10 122300762 122301480 + 0 NA intron (NM_001030059, intron 5 of 6) intron (NM_001030059, intron 5 of 6) -56340 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 1193 chr13 61443837 61445874 + 0 NA Intergenic L1PA13|LINE|L1 197766 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 3963 chr7 68401245 68401964 + 0 NA Intergenic Intergenic 660877 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 2455 chr2 166227556 166228427 + 0 NA intron (NM_001040143, intron 19 of 25) intron (NM_001040143, intron 19 of 25) 75708 NM_001040143 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 55 chr1 23953231 23954106 + 0 NA promoter-TSS (NR_027042) promoter-TSS (NR_027042) -156 NR_027042 259283 Hs.523369 NM_001348075 ENSG00000197880 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 3592 chr6 19995801 19997007 + 0 NA Intergenic Intergenic 158803 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 1890 chr17 59322680 59323550 + 0 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 121950 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1681 chr16 6539500 6540125 + 0 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -283998 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 872 chr12 18306380 18307844 + 0 NA Intergenic MLT2B1|LTR|ERVL -63985 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 1146 chr13 37038805 37039571 + 0 NA Intergenic Intergenic 32779 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 395 chr1 229714670 229715560 + 0 NA Intergenic Intergenic -20673 NM_012089 23456 Hs.17614 NM_012089 ENSG00000135776 ABCB10 EST20237|M-ABC2|MTABC2 ATP binding cassette subfamily B member 10 protein-coding 89 chr1 38616825 38617695 + 0 NA Intergenic LTR16A|LTR|ERVL 62357 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 988 chr12 97837891 97838797 + 0 NA Intergenic Intergenic -20455 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript (non-protein coding) ncRNA 4342 chr8 93108104 93109295 + 0 NA promoter-TSS (NM_001198631) promoter-TSS (NM_001198631) -817 NM_001198625 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding 3584 chr6 19297811 19299066 + 0 NA Intergenic Intergenic -117727 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 2295 chr2 66221748 66222581 + 0 NA Intergenic L2c|LINE|L2 363296 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 1550 chr14 97444512 97445776 + 0 NA Intergenic Intergenic 35228 NR_104113 145249 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 1454 chr14 76952216 76953394 + 0 NA intron (NM_004452, intron 7 of 10) intron (NM_004452, intron 7 of 10) 115115 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 2533 chr2 217672178 217673187 + 0 NA Intergenic Intergenic 52100 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 3960 chr7 68153114 68154523 + 0 NA Intergenic Intergenic 668578 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 4434 chr8 135588222 135590719 + 0 NA intron (NM_001029939, intron 11 of 16) intron (NM_001029939, intron 11 of 16) -20844 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1584 chr15 34317042 34318000 + 0 NA intron (NM_020371, intron 1 of 5) MLT1N2|LTR|ERVL-MaLR 13782 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 1675 chr16 5964260 5965860 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -104072 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 649 chr11 35824440 35825324 + 0 NA intron (NM_017583, intron 4 of 4) intron (NM_017583, intron 4 of 4) 140582 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 3903 chr7 28108355 28109081 + 0 NA intron (NM_175061, intron 1 of 4) MIR3|SINE|MIR -111358 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 2150 chr2 7166749 7167719 + 0 NA intron (NM_014746, intron 7 of 8) intron (NM_014746, intron 7 of 8) 50777 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 1318 chr14 26424245 26425477 + 0 NA Intergenic Intergenic 642099 NM_006491 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 642 chr11 33912664 33914322 + 0 NA 5' UTR (NM_005574, exon 1 of 6) 5' UTR (NM_005574, exon 1 of 6) 343 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1764 chr16 68354348 68355219 + 0 NA intron (NM_001184824, intron 2 of 16) FAM|SINE|Alu 9766 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 3348 chr5 51527342 51528552 + 0 NA Intergenic Intergenic -555827 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 1908 chr17 72553687 72554673 + 0 NA Intergenic L1MD2|LINE|L1 9302 NM_001324073 100130520 NM_001324073 LOC100130520 CD300H|CD300Hs CD300c molecule-like protein-coding 4291 chr8 43095799 43097380 + 0 NA Intergenic SAR|Satellite|Satellite -50996 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 2792 chr22 47080573 47081198 + 0 NA 3' UTR (NM_022766, exon 13 of 13) 3' UTR (NM_022766, exon 13 of 13) 53267 NM_022766 64781 Hs.200668 NM_022766 ENSG00000100422 CERK LK4|dA59H18.2|dA59H18.3|hCERK ceramide kinase protein-coding 1718 chr16 21999963 22001380 + 0 NA intron (NM_173806, intron 1 of 2) intron (NM_173806, intron 1 of 2) 11760 NM_173806 255762 Hs.98244 NM_173806 ENSG00000155714 PDZD9 C16orf65 PDZ domain containing 9 protein-coding 1098 chr12 123616269 123617859 + 0 NA Intergenic Intergenic -22028 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 3003 chr3 155104103 155105519 + 0 NA Intergenic Intergenic -93322 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 2665 chr20 49166843 49167612 + 0 NA intron (NM_001278618, intron 1 of 8) L2b|LINE|L2 -35096 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 4609 chr9 126968590 126969255 + 0 NA Intergenic LTR16C|LTR|ERVL -50963 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 184 chr1 96049246 96050335 + 0 NA Intergenic Intergenic 74118 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LOC100996635 - uncharacterized LOC100996635 ncRNA 776 chr11 115218540 115219975 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 14961 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 3738 chr6 105707598 105709096 + 0 NA Intergenic L4|LINE|RTE -80489 NM_022361 64208 Hs.458336 NM_022361 ENSG00000132429 POPDC3 POP3|bA355M14.1 popeye domain containing 3 protein-coding 1570 chr15 27659166 27660188 + 0 NA intron (NM_033223, intron 5 of 9) intron (NM_033223, intron 5 of 9) -253211 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 2673 chr20 57697013 57697915 + 0 NA Intergenic Intergenic -68611 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174|dJ492J12.1 zinc finger protein 831 protein-coding 1269 chr13 103622483 103623450 + 0 NA Intergenic Intergenic 90517 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 181 chr1 91008093 91008974 + 0 NA Intergenic Intergenic 174261 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 412 chr1 245237338 245237983 + 0 NA intron (NR_026587, intron 2 of 5) intron (NR_026587, intron 2 of 5) -80627 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 1671 chr16 5475570 5477197 + 0 NA Intergenic Intergenic 189868 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 4242 chr8 19214832 19215750 + 0 NA intron (NM_022071, intron 5 of 9) intron (NM_022071, intron 5 of 9) 43804 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 830 chr11 132292535 132293935 + 0 NA intron (NM_001319104, intron 6 of 6) intron (NM_001319104, intron 6 of 6) 139039 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 3721 chr6 92387417 92389146 + 0 NA intron (NR_104154, intron 2 of 3) intron (NR_104154, intron 2 of 3) 11865 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility candidate 6 (non-protein coding) ncRNA 2893 chr3 107603643 107604335 + 0 NA intron (NR_015394, intron 1 of 2) MLT1E2|LTR|ERVL-MaLR 1937 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 2062 chr18 69074163 69074954 + 0 NA Intergenic AluJb|SINE|Alu 171634 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 3935 chr7 45091373 45092408 + 0 NA intron (NM_001029835, intron 2 of 9) ERV3-16A3_I-int|LTR|ERVL 24657 NM_001029835 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffolding protein protein-coding 1101 chr12 125565401 125567030 + 0 NA intron (NM_023928, intron 3 of 17) intron (NM_023928, intron 3 of 17) 16302 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 326 chr1 184904857 184905666 + 0 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 38457 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 FAM129A C1orf24|GIG39|NIBAN family with sequence similarity 129 member A protein-coding 1165 chr13 44340712 44342367 + 0 NA intron (NM_001347966, intron 1 of 17) intron (NM_001347966, intron 1 of 17) 19577 NM_001347970 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 2886 chr3 102343668 102344896 + 0 NA Intergenic Intergenic 190423 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 2543 chr2 222416611 222417733 + 0 NA intron (NM_001304536, intron 4 of 18) intron (NM_001304536, intron 4 of 18) 19906 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 3940 chr7 55159801 55160485 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -17367 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 335 chr1 202462612 202463487 + 0 NA intron (NM_001331029, intron 16 of 24) intron (NM_001331029, intron 16 of 24) 31178 NM_032103 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 3531 chr5 160052414 160053974 + 0 NA intron (NM_025153, intron 13 of 25) intron (NM_025153, intron 13 of 25) 140835 NR_029701 406938 NR_029701 ENSG00000253522 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 4681 chrX 38446922 38447642 + 0 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 26551 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 4287 chr8 41633628 41634781 + 0 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 20936 NM_000037 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 2791 chr22 44915766 44916356 + 0 NA Intergenic Helitron3Na_Mam|RC|Helitron -22056 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 LDOC1L Mar6|Mart6|dJ1033E15.2 leucine zipper down-regulated in cancer 1 like protein-coding 4481 chr9 8893117 8894070 + 0 NA intron (NM_002839, intron 11 of 45) L1ME3C|LINE|L1 35575 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 1867 chr17 49810308 49811125 + 0 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 396640 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 4742 chrY 13851301 13852358 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 681560 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 3969 chr7 69120959 69121579 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 57364 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 4664 chrX 10967388 10968371 + 0 NA Intergenic Intergenic -116070 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 2505 chr2 198100184 198101131 + 0 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 37942 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 3533 chr5 160797373 160798155 + 0 NA intron (NM_021911, intron 6 of 10) intron (NM_021911, intron 6 of 10) 177366 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 - gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 2936 chr3 124979701 124980668 + 0 NA intron (NM_021964, intron 7 of 8) L2|LINE|L2 -48575 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 440 chr10 24601915 24602823 + 0 NA intron (NM_001098500, intron 3 of 18) intron (NM_001098500, intron 3 of 18) 37755 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 1289 chr13 108490088 108491635 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -3055 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 2525 chr2 211325622 211326805 + 0 NA intron (NR_110604, intron 4 of 5) intron (NR_110604, intron 4 of 5) 15216 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 841 chr12 3592111 3593235 + 0 NA TTS (NR_126055) TTS (NR_126055) -7691 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 1898 chr17 70525574 70526137 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 63088 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 4668 chrX 11498278 11499088 + 0 NA intron (NR_109776, intron 1 of 14) L1MB8|LINE|L1 -52778 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 1044 chr12 107897585 107898640 + 0 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) -76522 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 3513 chr5 156340859 156341616 + 0 NA Intergenic Intergenic 49029 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T-cell immunoglobulin and mucin domain containing 4 protein-coding 1751 chr16 53956853 53958033 + 0 NA intron (NM_001080432, intron 7 of 8) intron (NM_001080432, intron 7 of 8) -115862 NR_103838 100505692 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 4029 chr7 91065667 91066812 + 0 NA Intergenic Intergenic 172456 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 91 chr1 38643670 38644656 + 0 NA Intergenic L4|LINE|RTE 36276 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 2137 chr2 4124146 4125292 + 0 NA Intergenic Intergenic 102968 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 4116 chr7 129475134 129475865 + 0 NA intron (NM_182697, intron 4 of 4) intron (NM_182697, intron 4 of 4) -60645 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 467 chr10 71707875 71708459 + 0 NA intron (NM_080805, intron 32 of 33) intron (NM_080805, intron 32 of 33) -104190 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 2121 chr2 1858962 1859662 + 0 NA intron (NM_001329845, intron 18 of 24) intron (NM_001329845, intron 18 of 24) -110993 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 474 chr10 77467421 77468460 + 0 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -4273 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 3563 chr6 6834461 6835838 + 0 NA Intergenic Intergenic -212090 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 563 chr11 11317813 11318684 + 0 NA intron (NM_198516, intron 9 of 10) intron (NM_198516, intron 9 of 10) 56656 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 3248 chr4 157150758 157152232 + 0 NA Intergenic Intergenic -276447 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 2919 chr3 117407214 117407952 + 0 NA Intergenic Intergenic 767305 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 4058 chr7 107901701 107902888 + 0 NA intron (NM_005010, intron 3 of 27) LTR16E2|LTR|ERVL -21680 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 2953 chr3 130950524 130951826 + 0 NA intron (NM_024800, intron 15 of 17) intron (NM_024800, intron 15 of 17) -129514 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 3489 chr5 150859952 150860818 + 0 NA TTS (NM_001308150) TTS (NM_001308150) 33228 NM_078483 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 68 chr1 31949582 31950658 + 0 NA Intergenic L1PBa|LINE|L1 -21719 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LINC01225 - long intergenic non-protein coding RNA 1225 pseudo 4106 chr7 126777704 126778784 + 0 NA intron (NM_001127323, intron 2 of 10) intron (NM_001127323, intron 2 of 10) -76937 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 2514 chr2 206632852 206633891 + 0 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 86147 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 4176 chr7 146103398 146104350 + 0 NA intron (NM_014141, intron 1 of 23) intron (NM_014141, intron 1 of 23) 290421 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein-like 2 protein-coding 3628 chr6 32753189 32754099 + 0 NA Intergenic Intergenic -22314 NM_001300790 3120 Hs.731563 NM_182549 ENSG00000232629 HLA-DQB2 HLA-DQB1|HLA-DXB major histocompatibility complex, class II, DQ beta 2 protein-coding 3807 chr6 135632765 135633522 + 0 NA intron (NM_001134831, intron 26 of 28) intron (NM_001134831, intron 26 of 28) 72845 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 3995 chr7 77586875 77588607 + 0 NA TTS (NM_020432) TTS (NM_020432) 118294 NM_001127357 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 222 chr1 117774438 117775398 + 0 NA Intergenic Intergenic -21336 NR_045604 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 2911 chr3 115605063 115606224 + 0 NA intron (NM_002338, intron 3 of 6) intron (NM_002338, intron 3 of 6) 263492 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 2418 chr2 136898807 136900218 + 0 NA Intergenic Intergenic -23787 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 3132 chr4 55807083 55807993 + 0 NA Intergenic Intergenic 184224 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 305 chr1 179742776 179743707 + 0 NA intron (NM_001329719, intron 1 of 4) intron (NM_001329719, intron 1 of 4) 30943 NM_001329719 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 928 chr12 64382853 64383811 + 0 NA intron (NM_020762, intron 2 of 21) intron (NM_020762, intron 2 of 21) 144799 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 1644 chr15 78630240 78631018 + 0 NA Intergenic Intergenic -2037 NM_004378 1381 Hs.346950 NM_004378 ENSG00000166426 CRABP1 CRABP|CRABP-I|CRABPI|RBP5 cellular retinoic acid binding protein 1 protein-coding 1526 chr14 89633374 89634176 + 0 NA intron (NM_001085471, intron 6 of 6) intron (NM_001085471, intron 6 of 6) 249679 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 4560 chr9 92167945 92169258 + 0 NA Intergenic Intergenic -51326 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 4276 chr8 33093651 33094587 + 0 NA Intergenic L3|LINE|CR1 236545 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 3245 chr4 153859444 153861009 + 0 NA Intergenic Intergenic -2237 NR_136614 729870 Hs.310357 NR_136614 LOC729870 - uncharacterized LOC729870 ncRNA 217 chr1 116958027 116958979 + 0 NA intron (NR_024126, intron 1 of 2) intron (NR_024126, intron 1 of 2) 2678 NR_024126 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 4076 chr7 114293205 114294104 + 0 NA TTS (NR_037439) TTS (NR_037439) 254 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 158 chr1 83878051 83879304 + 0 NA Intergenic Intergenic -426786 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 281 chr1 167473331 167473871 + 0 NA intron (NM_198053, intron 1 of 7) intron (NM_198053, intron 1 of 7) 14246 NM_198053 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 3832 chr6 153529605 153530400 + 0 NA Intergenic Intergenic -77613 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G-protein signaling 17 protein-coding 3412 chr5 101959899 101960719 + 0 NA intron (NR_103755, intron 1 of 2) intron (NR_103755, intron 1 of 2) 43237 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 3658 chr6 41082658 41083941 + 0 NA intron (NR_026938, intron 6 of 22) intron (NR_026938, intron 6 of 22) 14526 NR_026938 221442 Hs.374076 NM_001010871 ENSG00000161912 ADCY10P1 - adenylate cyclase 10, soluble pseudogene 1 pseudo 1418 chr14 62075191 62076154 + 0 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -38301 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 36 chr1 16653034 16654103 + 0 NA intron (NM_018994, intron 1 of 9) L2c|LINE|L2 25418 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 1368 chr14 43171137 43172700 + 0 NA Intergenic Intergenic 1095859 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 748 chr11 109841233 109842495 + 0 NA Intergenic Intergenic -122223 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 472 chr10 76348863 76349593 + 0 NA intron (NM_006721, intron 8 of 10) intron (NM_006721, intron 8 of 10) -60146 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 1655 chr15 88866344 88867334 + 0 NA Intergenic Intergenic -66877 NM_001012338 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 1943 chr18 11550747 11551578 + 0 NA Intergenic HERV3-int|LTR|ERV1 -58395 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 711 chr11 85517602 85518534 + 0 NA intron (NM_032943, intron 1 of 18) intron (NM_032943, intron 1 of 18) 4134 NM_032943 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 132 chr1 62850084 62850886 + 0 NA Intergenic Intergenic -51490 NM_001017415 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 1791 chr16 83081645 83082441 + 0 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -58140 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 3779 chr6 119091140 119093017 + 0 NA Intergenic MER101|LTR|ERV1 -11793 NR_037662 100287632 Hs.334026 NR_037662 LOC100287632 - selenoprotein K pseudogene pseudo 3747 chr6 108987883 108988650 + 0 NA intron (NM_001455, intron 2 of 2) intron (NM_001455, intron 2 of 2) -84591 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 2180 chr2 23808646 23809437 + 0 NA intron (NM_052920, intron 3 of 13) L1MB5|LINE|L1 200743 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 2769 chr22 18879859 18880593 + 0 NA intron (NR_136571, intron 1 of 11) HSATI|Satellite|Satellite 1718 NR_136571 100996432 Hs.631668 NR_136571 LINC01663 - long intergenic non-protein coding RNA 1663 ncRNA 1428 chr14 65890159 65891700 + 0 NA intron (NR_038170, intron 1 of 10) Tigger2|DNA|TcMar-Tigger 11481 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 - fucosyltransferase 8 protein-coding 4081 chr7 115371893 115372645 + 0 NA Intergenic Intergenic 236098 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 1018 chr12 103940327 103941211 + 0 NA promoter-TSS (NR_110103) promoter-TSS (NR_110103) -803 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LOC101929084 - uncharacterized LOC101929084 ncRNA 1125 chr13 22849669 22850491 + 0 NA non-coding (NR_103810, exon 2 of 2) non-coding (NR_103810, exon 2 of 2) 65656 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 2279 chr2 59087495 59088765 + 0 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) 340242 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 741 chr11 107443737 107444679 + 0 NA Intergenic Charlie7|DNA|hAT-Charlie -7747 NM_001301010 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9 alkB homolog 8, tRNA methyltransferase protein-coding 998 chr12 99040855 99041609 + 0 NA intron (NM_001160, intron 1 of 25) AluSg4|SINE|Alu 2154 NM_001160 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 2806 chr3 7886266 7887107 + 0 NA Intergenic Intergenic 171308 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 4621 chr9 133458527 133459364 + 0 NA intron (NM_003934, intron 1 of 18) intron (NM_003934, intron 1 of 18) 3985 NM_003934 8939 Hs.98751 NM_003934 ENSG00000107164 FUBP3 FBP3 far upstream element binding protein 3 protein-coding 3032 chr3 172691275 172692237 + 0 NA intron (NM_031955, intron 5 of 10) intron (NM_031955, intron 5 of 10) 167302 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 1789 chr16 79320500 79321809 + 0 NA Intergenic AmnSINE1|SINE|Deu 313468 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 3880 chr7 18534834 18535999 + 0 NA promoter-TSS (NM_001204145) promoter-TSS (NM_001204145) 83 NM_001321902 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 3947 chr7 61782154 61782882 + 0 NA Intergenic HSATII|Satellite|Satellite 981916 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 3192 chr4 98238410 98239928 + 0 NA Intergenic Intergenic -48908 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 2076 chr19 13751278 13752145 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -90863 NM_001320565 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 4294 chr8 48608882 48610037 + 0 NA intron (NR_104581, intron 8 of 16) intron (NR_104581, intron 8 of 16) 41267 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 1545 chr14 95564001 95565024 + 0 NA intron (NM_001195573, intron 21 of 24) MIR3|SINE|MIR 35328 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 1838 chr17 34982359 34983307 + 0 NA Intergenic AluSx1|SINE|Alu 24808 NM_024864 79922 Hs.194864 NM_024864 ENSG00000278619 MRM1 - mitochondrial rRNA methyltransferase 1 protein-coding 1773 chr16 70608730 70609316 + 0 NA 3' UTR (NM_012426, exon 26 of 26) 3' UTR (NM_012426, exon 26 of 26) -4775 NM_001172771 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 1058 chr12 111171739 111172299 + 0 NA intron (NM_001244974, intron 1 of 7) L2b|LINE|L2 8764 NM_001244974 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 3883 chr7 22520174 22520954 + 0 NA intron (NM_001164460, intron 4 of 4) intron (NM_001164460, intron 4 of 4) 19337 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 3704 chr6 80094307 80094996 + 0 NA Intergenic MER68|LTR|ERVL -71550 NR_130915 80078 NR_130915 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 3166 chr4 82542521 82543371 + 0 NA Intergenic Intergenic -149864 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 3392 chr5 74952025 74952853 + 0 NA intron (NM_001276713, intron 9 of 13) intron (NM_001276713, intron 9 of 13) 45138 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 2860 chr3 63044556 63045427 + 0 NA Intergenic Intergenic -43373 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 3141 chr4 72361859 72362529 + 0 NA intron (NM_001134742, intron 15 of 24) LTR16A1|LTR|ERVL 157424 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 1535 chr14 90871866 90873212 + 0 NA 3' UTR (NM_006888, exon 6 of 6) 3' UTR (NM_006888, exon 6 of 6) 9212 NM_006888 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 3775 chr6 118722379 118723320 + 0 NA Intergenic Intergenic -99687 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 4253 chr8 25193573 25194554 + 0 NA intron (NM_024940, intron 22 of 51) intron (NM_024940, intron 22 of 51) -8855 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 1335 chr14 33444963 33445684 + 0 NA intron (NM_173159, intron 1 of 11) MER5A|DNA|hAT-Charlie 36864 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 4652 chrUn_gl000225 128808 134290 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 3780 chr6 123053634 123054680 + 0 NA Intergenic Intergenic -16189 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 3974 chr7 69287857 69289057 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 224552 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 3918 chr7 33385471 33386796 + 0 NA intron (NM_001033604, intron 12 of 21) intron (NM_001033604, intron 12 of 21) 216981 NM_014451 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 3409 chr5 99236005 99236812 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 366714 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 4490 chr9 13967133 13969069 + 0 NA Intergenic MIR|SINE|MIR 40131 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 165 chr1 87221040 87222279 + 0 NA Intergenic MIRb|SINE|MIR 51406 NM_001206653 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like endophilin B1 protein-coding 4579 chr9 104269003 104269729 + 0 NA Intergenic MER57A-int|LTR|ERV1 -19863 NM_032342 84302 Hs.388742 NM_032342 ENSG00000165152 TMEM246 C9orf125 transmembrane protein 246 protein-coding 2351 chr2 95896278 95898439 + 0 NA Intergenic Intergenic -42838 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 729 chr11 92952401 92953335 + 0 NA Intergenic Intergenic -21727 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 4509 chr9 27933344 27934224 + 0 NA Intergenic Intergenic -359920 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENNL72|FTDALS|FTDALS1 chromosome 9 open reading frame 72 protein-coding 2 chr1 4455214 4456583 + 0 NA Intergenic Intergenic -16213 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 4229 chr8 9637639 9638354 + 0 NA 3' UTR (NM_003747, exon 27 of 27) 3' UTR (NM_003747, exon 27 of 27) 38814 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 2125 chr2 2242039 2243059 + 0 NA intron (NM_001329845, intron 2 of 24) intron (NM_001329845, intron 2 of 24) -80455 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 2553 chr2 229311055 229312586 + 0 NA Intergenic Intergenic -265459 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 1231 chr13 99290112 99291610 + 0 NA Intergenic Intergenic -61456 NM_001032296 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 2979 chr3 135214521 135215497 + 0 NA Intergenic Intergenic -469506 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 3270 chr4 184202954 184203736 + 0 NA intron (NM_024949, intron 17 of 22) intron (NM_024949, intron 17 of 22) 38582 NM_001111319 53842 Hs.333179 NM_001111319 ENSG00000177300 CLDN22 CLDN21 claudin 22 protein-coding 2446 chr2 152878287 152879046 + 0 NA intron (NM_001145798, intron 2 of 12) intron (NM_001145798, intron 2 of 12) -48066 NM_001005747 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 973 chr12 93026959 93027893 + 0 NA Intergenic L2a|LINE|L2 -69193 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000214215 C12orf74 - chromosome 12 open reading frame 74 protein-coding 2961 chr3 132372639 132373691 + 0 NA promoter-TSS (NM_198329) promoter-TSS (NM_198329) -125 NM_198329 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 2569 chr2 237607306 237608855 + 0 NA Intergenic Intergenic 129700 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 1046 chr12 107957053 107957750 + 0 NA intron (NM_001347944, intron 3 of 14) L2c|LINE|L2 -17233 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 319 chr1 182732658 182734024 + 0 NA Intergenic Intergenic -25243 NM_001200052 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 4021 chr7 84059990 84060832 + 0 NA Intergenic Intergenic -101381 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 2571 chr2 237648968 237649879 + 0 NA Intergenic Intergenic 171043 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 2857 chr3 62667694 62668611 + 0 NA intron (NM_183394, intron 3 of 27) intron (NM_183394, intron 3 of 27) 192912 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 1179 chr13 51038924 51039673 + 0 NA intron (NR_109974, intron 4 of 6) intron (NR_109974, intron 4 of 6) 62287 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000229323 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 1922 chr18 939702 940645 + 0 NA Intergenic Intergenic 34976 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 735 chr11 94996286 94997588 + 0 NA Intergenic Intergenic -31232 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 3048 chr3 182225975 182227750 + 0 NA Intergenic Intergenic -1950 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 2948 chr3 130497658 130498536 + 0 NA Intergenic Intergenic -32401 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 1271 chr13 103967920 103968720 + 0 NA Intergenic Intergenic -109230 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 4566 chr9 93462250 93463357 + 0 NA Intergenic L2a|LINE|L2 -57416 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 344 chr1 204287000 204288259 + 0 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 41428 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 4682 chrX 38827346 38828190 + 0 NA Intergenic Intergenic -164632 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 2103 chr19 47447956 47448898 + 0 NA intron (NM_004491, intron 2 of 5) intron (NM_004491, intron 2 of 5) 26494 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 2949 chr3 130508413 130509696 + 0 NA Intergenic AluJb|SINE|Alu -43358 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 1710 chr16 18272634 18273228 + 0 NA Intergenic Intergenic 153588 NM_001282511 101059953 Hs.636569 NM_001282511 ENSG00000214940 NPIPA8 LCR16a9 nuclear pore complex interacting protein family member A8 protein-coding 2224 chr2 40606752 40608334 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 49901 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 1133 chr13 30949149 30950177 + 0 NA Intergenic Tigger5|DNA|TcMar-Tigger -1612 NR_024464 100188949 Hs.439791 NR_024464 ENSG00000238121 LINC00426 - long intergenic non-protein coding RNA 426 ncRNA 2421 chr2 137913531 137914797 + 0 NA intron (NM_001316349, intron 5 of 27) MamRep1879|DNA|hAT? 391032 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 209 chr1 115724867 115725596 + 0 NA Intergenic MIRb|SINE|MIR -93110 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 2837 chr3 48034863 48035669 + 0 NA intron (NM_001134364, intron 2 of 17) HSMAR2|DNA|TcMar-Mariner 95503 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 4456 chr9 2267250 2268080 + 0 NA Intergenic Arthur1A|DNA|hAT-Tip100 109209 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 4132 chr7 131798214 131799249 + 0 NA Intergenic Intergenic -146889 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 1118 chr13 21772452 21773112 + 0 NA Intergenic Intergenic -22041 NM_145061 221150 Hs.88523 NM_145061 ENSG00000165480 SKA3 C13orf3|RAMA1 spindle and kinetochore associated complex subunit 3 protein-coding 1575 chr15 29768854 29769687 + 0 NA intron (NM_015307, intron 1 of 10) L1ME3A|LINE|L1 93657 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189 member A1 protein-coding 2428 chr2 145941208 145942026 + 0 NA Intergenic Intergenic 516083 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 4718 chrX 129927923 129928519 + 0 NA intron (NM_006375, intron 2 of 14) intron (NM_006375, intron 2 of 14) -8389 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 4460 chr9 2426312 2427767 + 0 NA Intergenic MIR3|SINE|MIR -194735 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 4191 chr7 157769797 157770635 + 0 NA intron (NM_130843, intron 10 of 21) L2b|LINE|L2 122939 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 600 chr11 19246715 19247757 + 0 NA intron (NM_001256372, intron 11 of 12) intron (NM_001256372, intron 11 of 12) -15118 NM_003476 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 80 chr1 37320871 37321601 + 0 NA intron (NM_000831, intron 7 of 15) MIRb|SINE|MIR 178608 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 336 chr1 202518517 202519301 + 0 NA intron (NM_001197131, intron 1 of 6) L2b|LINE|L2 9667 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 457 chr10 42596608 42600933 + 0 NA Intergenic HSATII|Satellite|Satellite 264723 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1301 chr13 111657982 111659775 + 0 NA Intergenic Intergenic 40504 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 383 chr1 218477764 218478736 + 0 NA intron (NM_016052, intron 2 of 4) intron (NM_016052, intron 2 of 4) 19621 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 2532 chr2 217271300 217272488 + 0 NA Intergenic Intergenic -5243 NM_014140 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 3817 chr6 140907297 140908291 + 0 NA Intergenic L1P4e|LINE|L1 -97157 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 1873 chr17 54120202 54121219 + 0 NA Intergenic L2a|LINE|L2 -110126 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 2497 chr2 182862767 182864123 + 0 NA intron (NM_001080545, intron 2 of 4) intron (NM_001080545, intron 2 of 4) 12894 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 3651 chr6 39306958 39308519 + 0 NA intron (NM_145027, intron 22 of 22) intron (NM_145027, intron 22 of 22) -17408 NM_001135106 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 4157 chr7 137312262 137313382 + 0 NA intron (NM_001321709, intron 7 of 33) intron (NM_001321709, intron 7 of 33) 218256 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 92 chr1 38883675 38884827 + 0 NA Intergenic Intergenic -203812 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 3687 chr6 54379850 54380404 + 0 NA Intergenic Intergenic 206924 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 1212 chr13 94157382 94158846 + 0 NA intron (NM_005708, intron 1 of 8) MER82|DNA|TcMar-Tigger 279053 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 2253 chr2 50185651 50186666 + 0 NA intron (NM_001135659, intron 22 of 23) intron (NM_001135659, intron 22 of 23) 15183 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 2787 chr22 40181706 40182306 + 0 NA intron (NM_152512, intron 5 of 6) L2|LINE|L2 107788 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 2433 chr2 148004810 148006091 + 0 NA Intergenic Intergenic -596636 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 1477 chr14 79120786 79121756 + 0 NA intron (NM_001330195, intron 6 of 20) intron (NM_001330195, intron 6 of 20) 251197 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1164 chr13 44297150 44298097 + 0 NA intron (NM_017993, intron 1 of 16) intron (NM_017993, intron 1 of 16) 63493 NM_001347970 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 2824 chr3 35435341 35436379 + 0 NA promoter-TSS (NR_110817) promoter-TSS (NR_110817) -345 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 4597 chr9 119579703 119581203 + 0 NA intron (NM_014010, intron 11 of 21) MIR|SINE|MIR 130872 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 505 chr10 96008204 96009077 + 0 NA intron (NM_016341, intron 8 of 32) intron (NM_016341, intron 8 of 32) 38187 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 2739 chr21 40927882 40928805 + 0 NA Intergenic Intergenic 56406 NR_026543 114041 Hs.375120 NM_153754 ENSG00000184809 B3GALT5-AS1 C21orf88 B3GALT5 antisense RNA 1 ncRNA 670 chr11 51585555 51587668 + 0 NA Intergenic ALR/Alpha|Satellite|centr 71329 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 1094 chr12 119825631 119826364 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 53480 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 419 chr10 1623805 1624689 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 55422 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 995 chr12 98480325 98481561 + 0 NA Intergenic Intergenic -91717 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 837 chr12 2431526 2432677 + 0 NA intron (NM_001129830, intron 3 of 47) intron (NM_001129830, intron 3 of 47) 53159 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 2015 chr18 47395118 47396256 + 0 NA intron (NM_001080467, intron 27 of 39) intron (NM_001080467, intron 27 of 39) 55294 NR_117096 103091864 Hs.646459 NR_117096 ENSG00000267322 SNHG22 SCARNA17|SCARNA17HG small nucleolar RNA host gene 22 ncRNA 4521 chr9 38720131 38721024 + 0 NA Intergenic Intergenic 99492 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 625 chr11 23233407 23235126 + 0 NA Intergenic MIR3|SINE|MIR 206470 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 149 chr1 75804442 75805915 + 0 NA intron (NM_001320285, intron 5 of 25) intron (NM_001320285, intron 5 of 25) 204611 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 3208 chr4 120854332 120855557 + 0 NA Intergenic L1MD1|LINE|L1 -5751 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LOC100996694 - uncharacterized LOC100996694 ncRNA 3839 chr6 157254120 157255478 + 0 NA intron (NM_020732, intron 4 of 19) intron (NM_020732, intron 4 of 19) -153934 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 406 chr1 234990427 234991536 + 0 NA Intergenic Intergenic 108765 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 2289 chr2 61488215 61489220 + 0 NA intron (NM_014709, intron 43 of 79) L1MB3|LINE|L1 84164 NM_001321300 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2 AHA1|Hch1 activator of HSP90 ATPase homolog 2 protein-coding 3283 chr5 2871178 2871992 + 0 NA Intergenic Intergenic -46383 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 2312 chr2 70531256 70532568 + 0 NA Intergenic MIR|SINE|MIR -2692 NM_032822 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 19 chr1 9626833 9628299 + 0 NA intron (NM_032315, intron 3 of 6) intron (NM_032315, intron 3 of 6) -21366 NM_001130924 199953 Hs.632365 NM_001010866 ENSG00000188807 TMEM201 Ima1|NET5|SAMP1 transmembrane protein 201 protein-coding 3096 chr4 20640459 20642467 + 0 NA Intergenic Intergenic -56442 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 PARK2 coregulated like protein-coding 3637 chr6 36786317 36787168 + 0 NA intron (NM_001314017, intron 3 of 6) MamRep434|DNA|TcMar-Tigger 20478 NM_020939 57699 Hs.657869 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 1030 chr12 105666943 105668039 + 0 NA Intergenic Tigger13a|DNA|TcMar-Tigger -37483 NM_001251904 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 365 chr1 208273993 208275131 + 0 NA intron (NM_025179, intron 5 of 31) intron (NM_025179, intron 5 of 31) 143103 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 2730 chr21 36786542 36787568 + 0 NA intron (NR_073512, intron 2 of 2) MER4C|LTR|ERV1 166007 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 763 chr11 113420652 113421482 + 0 NA Intergenic Intergenic -75066 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 3255 chr4 166381268 166382085 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 74282 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 3332 chr5 49408435 49411201 + 0 NA Intergenic ALR/Alpha|Satellite|centr 327416 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 4632 chr9_gl000199_random 36447 43277 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 2021 chr18 50123390 50124012 + 0 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 257159 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 3430 chr5 121651738 121653275 + 0 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) 4742 NM_001308100 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 4590 chr9 113363324 113364178 + 0 NA Intergenic Intergenic -21591 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 3318 chr5 22908483 22909392 + 0 NA Intergenic L3|LINE|CR1 -55206 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 570 chr11 12340180 12343215 + 0 NA intron (NM_032867, intron 4 of 8) intron (NM_032867, intron 4 of 8) 33250 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 3123 chr4 49093076 49117816 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 116787 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 1880 chr17 55548779 55549632 + 0 NA intron (NM_170721, intron 5 of 9) intron (NM_170721, intron 5 of 9) 51753 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 3761 chr6 111972106 111973287 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -45219 NM_147686 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 252 chr1 161903218 161904339 + 0 NA intron (NM_007348, intron 15 of 15) intron (NM_007348, intron 15 of 15) 90477 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 4063 chr7 108376439 108377377 + 0 NA Intergenic L2c|LINE|L2 147736 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 3389 chr5 73772134 73773571 + 0 NA intron (NR_126354, intron 1 of 2) intron (NR_126354, intron 1 of 2) 59949 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 883 chr12 26893681 26894412 + 0 NA intron (NM_002223, intron 2 of 56) intron (NM_002223, intron 2 of 56) 92085 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 4610 chr9 128348138 128348951 + 0 NA intron (NM_001006617, intron 4 of 11) L2b|LINE|L2 120969 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 1998 chr18 42711259 42711978 + 0 NA Intergenic L2c|LINE|L2 -81329 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 2930 chr3 123476748 123477810 + 0 NA intron (NM_053027, intron 4 of 32) intron (NM_053027, intron 4 of 32) 68788 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 1367 chr14 42859588 42860447 + 0 NA Intergenic MIRc|SINE|MIR 783958 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 3825 chr6 150572692 150573466 + 0 NA Intergenic MIRb|SINE|MIR 108891 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 1070 chr12 115573135 115574569 + 0 NA Intergenic Intergenic -451883 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 3117 chr4 38565099 38566229 + 0 NA Intergenic Intergenic -40863 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 3618 chr6 24019850 24020676 + 0 NA Intergenic Intergenic -106151 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 3275 chr4 186708573 186709972 + 0 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -12206 NM_001145673 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 2463 chr2 168278658 168279556 + 0 NA Intergenic LTR78|LTR|ERV1 235314 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 4332 chr8 85240248 85241104 + 0 NA intron (NM_001100391, intron 1 of 8) intron (NM_001100391, intron 1 of 8) 143576 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 2493 chr2 179202930 179203901 + 0 NA intron (NM_001201481, intron 9 of 23) intron (NM_001201481, intron 9 of 23) 18444 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 105 chr1 48671799 48672946 + 0 NA Intergenic Intergenic -15985 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 4500 chr9 17656249 17657541 + 0 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 77943 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 2380 chr2 109250361 109251310 + 0 NA intron (NM_001193484, intron 1 of 9) intron (NM_001193484, intron 1 of 9) 13133 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 111 chr1 50604489 50606205 + 0 NA intron (NM_001324215, intron 1 of 5) intron (NM_001324215, intron 1 of 5) 30059 NM_001324215 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 3549 chr5 175251478 175252239 + 0 NA intron (NM_006650, intron 2 of 4) MIRb|SINE|MIR 28248 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 408 chr1 235079387 235080067 + 0 NA Intergenic Intergenic 20019 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 3577 chr6 15427730 15428414 + 0 NA intron (NM_004973, intron 3 of 17) intron (NM_004973, intron 3 of 17) 178986 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 2777 chr22 28728924 28729677 + 0 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -126557 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 559 chr11 9963325 9964134 + 0 NA intron (NM_030962, intron 16 of 39) AluJb|SINE|Alu 103040 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 3601 chr6 20868446 20869576 + 0 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 334323 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 580 chr11 13181515 13182820 + 0 NA Intergenic Intergenic -117107 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 2800 chr3 2003908 2004798 + 0 NA Intergenic Intergenic -136197 NM_175607 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 2523 chr2 211304580 211305473 + 0 NA intron (NM_001136575, intron 6 of 9) intron (NM_001136575, intron 6 of 9) 36403 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 4618 chr9 132874090 132875174 + 0 NA intron (NM_001136558, intron 15 of 18) Charlie1a|DNA|hAT-Charlie 31866 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 LOC401554 - uncharacterized LOC401554 ncRNA 3808 chr6 135920864 135921887 + 0 NA intron (NR_026805, intron 1 of 3) L1PB1|LINE|L1 102436 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 1257 chr13 102685252 102688037 + 0 NA intron (NM_001321945, intron 2 of 5) intron (NM_001321945, intron 2 of 5) 11710 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 31 chr1 14866230 14867135 + 0 NA Intergenic Intergenic -58531 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 4717 chrX 129764695 129765629 + 0 NA intron (NM_001281736, intron 12 of 13) intron (NM_001281736, intron 12 of 13) 136247 NR_027141 55855 Hs.567120 NM_018472 FAM45BP FAM45B|HT011 family with sequence similarity 45, member A pseudogene pseudo 4093 chr7 117578019 117578662 + 0 NA Intergenic L2c|LINE|L2 -64779 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 2307 chr2 68925525 68926059 + 0 NA Intergenic Intergenic -36121 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 2706 chr21 18487961 18488810 + 0 NA Intergenic AluJb|SINE|Alu -322823 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 4439 chr8 140198400 140199234 + 0 NA Intergenic L1M1|LINE|L1 -272568 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 4160 chr7 138803580 138804449 + 0 NA Intergenic Intergenic -9549 NM_024625 56829 Hs.133512 NM_020119 ENSG00000105939 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type containing, antiviral 1 protein-coding 3336 chr5 49421854 49424273 + 0 NA Intergenic ALR/Alpha|Satellite|centr 314171 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 4629 chr9_gl000199_random 29711 30424 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 2133 chr2 3175479 3177003 + 0 NA Intergenic Intergenic -46443 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 968 chr12 91852068 91853081 + 0 NA Intergenic Intergenic -275673 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 675 chr11 61975787 61976677 + 0 NA promoter-TSS (NM_002407) promoter-TSS (NM_002407) 92 NM_002407 4246 Hs.97644 NM_002407 ENSG00000124939 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin family 2A member 1 protein-coding 4722 chrX 130012080 130012868 + 0 NA intron (NM_006375, intron 2 of 14) intron (NM_006375, intron 2 of 14) 24817 NM_001281736 10495 Hs.171458 NM_006375 ENSG00000165675 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 431 chr10 13634176 13634799 + 0 NA intron (NM_003675, intron 1 of 9) intron (NM_003675, intron 1 of 9) 5548 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 3541 chr5 168699387 168700716 + 0 NA intron (NM_003062, intron 1 of 35) intron (NM_003062, intron 1 of 35) -9353 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 382 chr1 212112686 212114058 + 0 NA TTS (NM_001199809) TTS (NM_001199809) -95523 NM_016448 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 3487 chr5 148599733 148600614 + 0 NA intron (NM_014945, intron 8 of 23) intron (NM_014945, intron 8 of 23) -51228 NM_001146337 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 2846 chr3 56376217 56376878 + 0 NA intron (NM_015576, intron 2 of 16) intron (NM_015576, intron 2 of 16) 125844 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 4208 chr8 3248184 3249641 + 0 NA intron (NM_033225, intron 17 of 69) intron (NM_033225, intron 17 of 69) -662921 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 4729 chrX 149832484 149833403 + 0 NA intron (NM_000252, intron 14 of 14) intron (NM_000252, intron 14 of 14) -28894 NM_001306144 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 4329 chr8 84713335 84714396 + 0 NA Intergenic L1MA3|LINE|L1 -381588 NM_001100393 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 3863 chr7 3096330 3097405 + 0 NA Intergenic Intergenic -13288 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family member 11 protein-coding 139 chr1 72209044 72210123 + 0 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 93112 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 129 chr1 60567759 60568843 + 0 NA Intergenic Intergenic -28859 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 4662 chrX 10450198 10450757 + 0 NA intron (NM_001193280, intron 4 of 5) intron (NM_001193280, intron 4 of 5) 85166 NM_001193279 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 3008 chr3 156397830 156398881 + 0 NA intron (NM_001184718, intron 2 of 5) intron (NM_001184718, intron 2 of 5) 3902 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 926 chr12 63023737 63024904 + 0 NA Intergenic Intergenic 26854 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 4377 chr8 105119069 105119818 + 0 NA intron (NM_014677, intron 17 of 21) L2c|LINE|L2 -116120 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1246 chr13 101296861 101298746 + 0 NA intron (NM_032813, intron 6 of 18) intron (NM_032813, intron 6 of 18) 29386 NM_032813 84899 Hs.190983 NM_032813 ENSG00000125247 TMTC4 - transmembrane and tetratricopeptide repeat containing 4 protein-coding 1083 chr12 118975129 118976033 + 0 NA Intergenic Intergenic 161223 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 4000 chr7 77794954 77795721 + 0 NA intron (NM_001301128, intron 14 of 20) intron (NM_001301128, intron 14 of 20) -181222 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 1293 chr13 110470279 110471313 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -31882 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 3024 chr3 170350331 170351255 + 0 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -46930 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 1792 chr16 83566464 83567253 + 0 NA intron (NM_001257, intron 7 of 13) intron (NM_001257, intron 7 of 13) 24907 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 662 chr11 47934972 47935720 + 0 NA Intergenic AluJb|SINE|Alu -65250 NM_001318399 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 - nucleoporin 160 protein-coding 168 chr1 88143405 88144816 + 0 NA Intergenic Tigger12A|DNA|TcMar-Tigger -306772 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 1518 chr14 85300274 85301374 + 0 NA Intergenic Intergenic -552795 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 3447 chr5 131728625 131729255 + 0 NA intron (NM_001308122, intron 9 of 10) intron (NM_001308122, intron 9 of 10) -17525 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 3444 chr5 126129941 126130659 + 0 NA intron (NR_134488, intron 1 of 11) intron (NR_134488, intron 1 of 11) 17455 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 178 chr1 90836123 90837734 + 0 NA Intergenic Intergenic 345866 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 3156 chr4 78776992 78777895 + 0 NA Intergenic L3|LINE|CR1 -6362 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 2728 chr21 36611721 36612543 + 0 NA Intergenic Intergenic -190537 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 3992 chr7 76498235 76500007 + 0 NA Intergenic Intergenic -111018 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11 DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene pseudo 3439 chr5 124089688 124090503 + 0 NA Intergenic Intergenic -9290 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 124 chr1 56996944 56997816 + 0 NA intron (NM_003713, intron 2 of 5) MIRb|SINE|MIR 47877 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 1429 chr14 66306496 66308021 + 0 NA Intergenic MIR|SINE|MIR 369438 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 4259 chr8 27930126 27930915 + 0 NA intron (NM_001010906, intron 2 of 18) MamGypLTR3|LTR|Gypsy 10868 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 1974 chr18 34273023 34274621 + 0 NA intron (NM_025135, intron 14 of 24) intron (NM_025135, intron 14 of 24) -30441 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 2536 chr2 218113751 218114650 + 0 NA Intergenic Intergenic -33256 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 4350 chr8 94372355 94372997 + 0 NA intron (NR_033858, intron 10 of 10) intron (NR_033858, intron 10 of 10) -193597 NM_001242668 389676 Hs.386711 NM_001242668 C8orf87 - chromosome 8 open reading frame 87 protein-coding 3611 chr6 22750071 22750858 + 0 NA Intergenic Intergenic -32311 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 2483 chr2 177365795 177367660 + 0 NA Intergenic Intergenic 99053 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 1374 chr14 44997772 44999245 + 0 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 21896 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 2807 chr3 8370487 8371378 + 0 NA intron (NR_033378, intron 3 of 3) MER90a|LTR|ERV1 172412 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 2303 chr2 67469481 67470164 + 0 NA intron (NR_110568, intron 2 of 3) intron (NR_110568, intron 2 of 3) -27371 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 2259 chr2 50986964 50987742 + 0 NA intron (NM_001135659, intron 5 of 23) intron (NM_001135659, intron 5 of 23) -63953 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 2212 chr2 39923012 39923865 + 0 NA intron (NM_152390, intron 1 of 3) intron (NM_152390, intron 1 of 3) 30403 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 716 chr11 92323816 92324826 + 0 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 239059 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1886 chr17 55809013 55809976 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 13196 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 1972 chr18 34123547 34124854 + 0 NA intron (NM_025135, intron 5 of 24) intron (NM_025135, intron 5 of 24) 119181 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 940 chr12 68743734 68744730 + 0 NA Intergenic Intergenic -18071 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 685 chr11 74036434 74037475 + 0 NA Intergenic Intergenic -14233 NM_001288748 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 4169 chr7 141120023 141120820 + 0 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -130657 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 21 chr1 10582166 10583120 + 0 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 47640 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 523 chr10 112960239 112961149 + 0 NA Intergenic Intergenic 123904 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 4360 chr8 99151440 99152346 + 0 NA intron (NM_001145860, intron 9 of 15) AluJo|SINE|Alu 21825 NM_015029 10940 Hs.252828 NM_015029 ENSG00000104356 POP1 - POP1 homolog, ribonuclease P/MRP subunit protein-coding 3823 chr6 149492693 149493424 + 0 NA Intergenic Intergenic -46002 NM_001292035 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 2377 chr2 108904788 108905874 + 0 NA 5' UTR (NM_001056, exon 1 of 8) 5' UTR (NM_001056, exon 1 of 8) 236 NM_176825 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 3975 chr7 69291816 69293173 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 228589 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 1460 chr14 78348054 78349507 + 0 NA intron (NM_020421, intron 4 of 10) intron (NM_020421, intron 4 of 10) 82354 NM_020421 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 453 chr10 39107054 39107663 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 117631 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 2500 chr2 191417759 191418795 + 0 NA Intergenic MIRc|SINE|MIR -18809 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 3937 chr7 51189443 51190038 + 0 NA intron (NM_001287438, intron 6 of 7) intron (NM_001287438, intron 6 of 7) 194818 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 1202 chr13 79254027 79255078 + 0 NA Intergenic Intergenic -21238 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 RNF219 C13orf7 ring finger protein 219 protein-coding 3162 chr4 81525251 81526230 + 0 NA intron (NM_152770, intron 3 of 5) MamGypLTR2c|LTR|Gypsy 268866 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 C4orf22 - chromosome 4 open reading frame 22 protein-coding 3895 chr7 26449577 26450574 + 0 NA intron (NR_015364, intron 1 of 4) intron (NR_015364, intron 1 of 4) 6967 NR_015364 441204 Hs.587432 NR_015364 LOC441204 - uncharacterized LOC441204 ncRNA 3303 chr5 8475188 8475934 + 0 NA Intergenic Intergenic 14523 NR_039663 100616142 NR_039663 ENSG00000247516 MIR4458 mir-4458 microRNA 4458 ncRNA 351 chr1 204869952 204871050 + 0 NA intron (NM_001160332, intron 1 of 27) L2a|LINE|L2 -42853 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NF|NRCAML neurofascin protein-coding 2838 chr3 48046835 48047770 + 0 NA intron (NM_001134364, intron 1 of 17) HERVL-int|LTR|ERVL 83467 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 595 chr11 17422054 17422930 + 0 NA intron (NM_001287174, intron 29 of 38) L3b|LINE|CR1 -11614 NM_001166290 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 2926 chr3 121972936 121974022 + 0 NA intron (NM_001178065, intron 2 of 6) intron (NM_001178065, intron 2 of 6) 70298 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1 calcium sensing receptor protein-coding 1854 chr17 44120657 44121377 + 0 NA intron (NM_001193465, intron 8 of 15) MER117|DNA|hAT-Charlie 44401 NM_001007532 246744 Hs.661831 NM_001007532 ENSG00000256762 STH MAPTIT saitohin protein-coding 1498 chr14 80583679 80584906 + 0 NA Intergenic Intergenic -93470 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 835 chr12 2357312 2358613 + 0 NA intron (NM_001129830, intron 3 of 47) MIRb|SINE|MIR -20980 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 1267 chr13 103359147 103360459 + 0 NA Intergenic Intergenic -12932 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 4620 chr9 133436201 133437109 + 0 NA Intergenic Intergenic 18226 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 4015 chr7 82624608 82625185 + 0 NA intron (NM_014510, intron 3 of 19) L2|LINE|L2 167301 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 113 chr1 50741313 50742025 + 0 NA Intergenic Intergenic 147450 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 901 chr12 34853332 34854257 + 0 NA Intergenic ALR/Alpha|Satellite|centr 678578 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 2191 chr2 29381832 29382554 + 0 NA intron (NR_109844, intron 10 of 13) L3|LINE|CR1 43901 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 1056 chr12 111159081 111160105 + 0 NA intron (NM_001244974, intron 6 of 7) intron (NM_001244974, intron 6 of 7) 21190 NM_001244974 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 3664 chr6 43080766 43082174 + 0 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 36918 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 3108 chr4 25537791 25539071 + 0 NA intron (NR_134641, intron 2 of 3) LTR79|LTR|ERVL 32537 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 4365 chr8 101913584 101914557 + 0 NA Intergenic Intergenic 48729 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 4285 chr8 41304775 41305699 + 0 NA Intergenic MIRb|SINE|MIR -42844 NM_016099 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 2753 chr21 42853563 42854733 + 0 NA intron (NM_005656, intron 5 of 13) L1ME3C|LINE|L1 25844 NM_001135099 7113 Hs.439309 NM_005656 ENSG00000184012 TMPRSS2 PP9284|PRSS10 transmembrane protease, serine 2 protein-coding 1473 chr14 78904425 78905499 + 0 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 34888 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 881 chr12 26751806 26752485 + 0 NA exon (NM_002223, exon 30 of 57) exon (NM_002223, exon 30 of 57) 233986 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 2461 chr2 167975806 167976957 + 0 NA intron (NM_001079810, intron 2 of 9) intron (NM_001079810, intron 2 of 9) 21084 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 3186 chr4 93746777 93747472 + 0 NA intron (NM_001286838, intron 2 of 14) L2a|LINE|L2 521574 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 405 chr1 234890883 234891712 + 0 NA Intergenic Intergenic 31508 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 507 chr10 98869005 98869705 + 0 NA intron (NM_003061, intron 4 of 36) intron (NM_003061, intron 4 of 36) 6842 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 3843 chr6 157893227 157893988 + 0 NA intron (NM_153746, intron 1 of 8) intron (NM_153746, intron 1 of 8) -56557 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 1734 chr16 46418956 46436067 + 0 NA Intergenic HSATII|Satellite|Satellite 175498 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 3565 chr6 10862360 10863346 + 0 NA Intergenic LTR88b|LTR|Gypsy? 19245 NM_004752 9247 Hs.227098 NM_004752 ENSG00000124827 GCM2 GCMB|hGCMb glial cells missing homolog 2 protein-coding 3230 chr4 140809031 140810091 + 0 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 222639 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 1258 chr13 102688122 102689168 + 0 NA intron (NM_001321945, intron 2 of 5) intron (NM_001321945, intron 2 of 5) 9709 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 4030 chr7 91263578 91264840 + 0 NA Intergenic Intergenic 245825 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 2313 chr2 70646991 70648144 + 0 NA Intergenic Intergenic 61205 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 392 chr1 228940594 228941354 + 0 NA Intergenic Intergenic 70150 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 3653 chr6 39964469 39965592 + 0 NA Intergenic HERV3-int|LTR|ERV1 -62740 NR_033233 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCODA molybdenum cofactor synthesis 1 protein-coding 2242 chr2 49239135 49240229 + 0 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -47060 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 2254 chr2 50242236 50243262 + 0 NA intron (NM_001135659, intron 22 of 23) intron (NM_001135659, intron 22 of 23) -41408 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 3354 chr5 53196220 53197342 + 0 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) 50648 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 813 chr11 123193775 123195089 + 0 NA Intergenic Intergenic 57788 NR_039714 100616319 NR_039714 ENSG00000265357 MIR4493 - microRNA 4493 ncRNA 2014 chr18 47372512 47373948 + 0 NA intron (NM_001080467, intron 33 of 39) intron (NM_001080467, intron 33 of 39) 32837 NR_117096 103091864 Hs.646459 NR_117096 ENSG00000267322 SNHG22 SCARNA17|SCARNA17HG small nucleolar RNA host gene 22 ncRNA 644 chr11 34358189 34359076 + 0 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 20923 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 2477 chr2 174095433 174096841 + 0 NA intron (NM_016653, intron 12 of 19) intron (NM_016653, intron 12 of 19) 50627 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 3360 chr5 59748974 59749950 + 0 NA intron (NM_001165899, intron 1 of 16) intron (NM_001165899, intron 1 of 16) -34078 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA 1820 chr17 31481852 31483538 + 0 NA intron (NM_001094, intron 1 of 9) AluSx1|SINE|Alu 137311 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 2110 chr19_gl000208_random 1 745 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 1342 chr14 36750505 36753714 + 0 NA Intergenic Intergenic 37773 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 4359 chr8 98812060 98813138 + 0 NA intron (NM_018407, intron 1 of 6) MIR|SINE|MIR 24790 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 4185 chr7 155122463 155123251 + 0 NA Intergenic Intergenic 33375 NM_001346594 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 2457 chr2 166457273 166458161 + 0 NA intron (NM_001172173, intron 4 of 6) intron (NM_001172173, intron 4 of 6) 28871 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1968 chr18 31918802 31919685 + 0 NA Intergenic Intergenic -115728 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 1802 chr17 4150370 4151262 + 0 NA intron (NR_047571, intron 1 of 23) intron (NR_047571, intron 1 of 23) 16326 NM_001257999 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 2775 chr22 26770065 26770857 + 0 NA intron (NM_001184773, intron 14 of 16) intron (NM_001184773, intron 14 of 16) -54819 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 4065 chr7 109116127 109117151 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 483631 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 4009 chr7 80477931 80478809 + 0 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 70297 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 2273 chr2 58104743 58105752 + 0 NA Intergenic Intergenic -29539 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 3476 chr5 143707876 143709211 + 0 NA intron (NM_020768, intron 3 of 3) intron (NM_020768, intron 3 of 3) 158106 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 791 chr11 119695221 119696000 + 0 NA Intergenic MER102c|DNA|hAT-Charlie 95317 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 3330 chr5 43409402 43410718 + 0 NA intron (NM_001301873, intron 1 of 3) intron (NM_001301873, intron 1 of 3) 2433 NM_001301873 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 1355 chr14 37224220 37226209 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 98441 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 3640 chr6 37315032 37315960 + 0 NA Intergenic LTR43|LTR|ERV1 -6252 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 2231 chr2 46045742 46046346 + 0 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 167001 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 3617 chr6 24016655 24017394 + 0 NA Intergenic Intergenic -109390 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 3231 chr4 140818870 140820146 + 0 NA intron (NM_018717, intron 1 of 5) Charlie19a|DNA|hAT-Charlie 232586 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 3095 chr4 20593930 20594892 + 0 NA intron (NM_001289136, intron 29 of 35) intron (NM_001289136, intron 29 of 35) 64513 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 916 chr12 50077441 50078345 + 0 NA intron (NM_175736, intron 1 of 25) L2c|LINE|L2 23304 NM_198900 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 2043 chr18 60819461 60820851 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 166457 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 3646 chr6 38321942 38322715 + 0 NA intron (NM_001099272, intron 6 of 10) intron (NM_001099272, intron 6 of 10) -127044 NR_144472 101929425 Hs.665280 NR_144472 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 329 chr1 188113719 188114720 + 0 NA Intergenic Intergenic 701459 NR_132374 106144535 Hs.568709 NR_132374 ENSG00000231599 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 525 chr10 118512993 118513726 + 0 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) -11274 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 4476 chr9 8694833 8695681 + 0 NA intron (NM_001040712, intron 1 of 29) MLT1L|LTR|ERVL-MaLR 38689 NM_001171025 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type D protein-coding 27 chr1 13191057 13191877 + 0 NA Intergenic HERVE-int|LTR|ERV1 -3051 NR_111947 649324 Hs.538217 NR_111947 PRAMEF34P - PRAME family member 34, pseudogene pseudo 787 chr11 117343762 117345357 + 0 NA intron (NM_020693, intron 14 of 32) intron (NM_020693, intron 14 of 32) 145988 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 2331 chr2 89852748 89853760 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 741370 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 1902 chr17 71583428 71584293 + 0 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 56367 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 1561 chr14 105379594 105380332 + 0 NA Intergenic L1MEd|LINE|L1 -11190 NM_001308174 122618 Hs.407101 NM_138790 ENSG00000166428 PLD4 C14orf175 phospholipase D family member 4 protein-coding 3909 chr7 29370534 29372394 + 0 NA intron (NM_001293070, intron 2 of 13) AluSg|SINE|Alu -122878 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 1866 chr17 49728002 49728657 + 0 NA intron (NM_001082533, intron 6 of 9) intron (NM_001082533, intron 6 of 9) 314253 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 2001 chr18 42995149 42996648 + 0 NA intron (NM_001242692, intron 1 of 20) intron (NM_001242692, intron 1 of 20) 91103 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 4394 chr8 121815305 121816363 + 0 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 8475 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 3736 chr6 102117958 102118557 + 0 NA intron (NM_001166247, intron 3 of 16) intron (NM_001166247, intron 3 of 16) 271396 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 3731 chr6 99375216 99375958 + 0 NA non-coding (NR_103837, exon 2 of 5) non-coding (NR_103837, exon 2 of 5) 20295 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 3216 chr4 130247593 130248618 + 0 NA Intergenic L3b|LINE|CR1 230823 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 1310 chr13 115105095 115105758 + 0 NA Intergenic Intergenic -6003 NR_126391 104355150 Hs.569217 NR_126391 LINC01054 - long intergenic non-protein coding RNA 1054 ncRNA 3459 chr5 136709630 136710671 + 0 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 124868 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 protein-coding 2115 chr2 1020376 1021162 + 0 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -73691 NR_136151 101060391 Hs.120377 NR_136151 LOC101060391 - uncharacterized LOC101060391 ncRNA 4703 chrX 108637138 108638840 + 0 NA intron (NM_001522, intron 12 of 19) MamGyp-int|LTR|Gypsy 87296 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 4357 chr8 95002806 95003534 + 0 NA Intergenic Intergenic 73891 NM_001161781 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 4578 chr9 102991619 102992203 + 0 NA intron (NM_014425, intron 4 of 16) intron (NM_014425, intron 4 of 16) 122942 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 4234 chr8 12675154 12676840 + 0 NA TTS (NR_102423) TTS (NR_102423) -7087 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 3695 chr6 69360845 69362069 + 0 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 15825 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 1239 chr13 99968578 99969496 + 0 NA intron (NR_026644, intron 5 of 8) MIR|SINE|MIR -9288 NM_004951 1880 Hs.784 NM_004951 ENSG00000169508 GPR183 EBI2|hEBI2 G protein-coupled receptor 183 protein-coding 4489 chr9 13964157 13965127 + 0 NA Intergenic MIRb|SINE|MIR 36672 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 3035 chr3 173846564 173847092 + 0 NA intron (NM_014932, intron 4 of 6) intron (NM_014932, intron 4 of 6) -208242 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 769 chr11 114994517 114995513 + 0 NA Intergenic Intergenic -209281 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 1181 chr13 51251209 51252583 + 0 NA Intergenic Intergenic -130095 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000237152 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 1809 chr17 26501220 26502471 + 0 NA intron (NM_016231, intron 7 of 10) intron (NM_016231, intron 7 of 10) -51744 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 803 chr11 122118513 122119451 + 0 NA intron (NR_137179, intron 2 of 4) L2a|LINE|L2 -45165 NR_137181 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 2744 chr21 41702228 41703073 + 0 NA intron (NM_001389, intron 8 of 32) intron (NM_001389, intron 8 of 32) -52360 NR_038898 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 2559 chr2 233681072 233681950 + 0 NA intron (NM_001103147, intron 21 of 30) intron (NM_001103147, intron 21 of 30) -40236 NM_001172416 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 4133 chr7 131921669 131922504 + 0 NA intron (NM_020911, intron 5 of 31) intron (NM_020911, intron 5 of 31) -23534 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 3199 chr4 110907189 110908314 + 0 NA intron (NM_001963, intron 16 of 23) intron (NM_001963, intron 16 of 23) 73711 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 4669 chrX 15566866 15567260 + 0 NA intron (NM_001721, intron 17 of 18) MIRb|SINE|MIR 41632 NM_001721 660 Hs.495731 NM_001721 ENSG00000102010 BMX ETK|PSCTK2|PSCTK3 BMX non-receptor tyrosine kinase protein-coding 60 chr1 25802749 25803722 + 0 NA intron (NM_018202, intron 6 of 10) intron (NM_018202, intron 6 of 10) 45886 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 TMEM57 MACOILIN transmembrane protein 57 protein-coding 1245 chr13 101165846 101167504 + 0 NA intron (NM_001178004, intron 21 of 22) intron (NM_001178004, intron 21 of 22) 19381 NM_033110 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 1400 chr14 59262946 59264493 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -31287 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 1067 chr12 115340114 115341328 + 0 NA Intergenic Intergenic -218752 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 691 chr11 75350465 75351533 + 0 NA intron (NM_207577, intron 1 of 2) intron (NM_207577, intron 1 of 2) 28480 NM_207577 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 2615 chr20 13181214 13182294 + 0 NA Intergenic Intergenic -20664 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 1676 chr16 6056245 6057220 + 0 NA Intergenic Intergenic -12400 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 1388 chr14 53997552 53998425 + 0 NA Intergenic Intergenic 377916 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 3134 chr4 56624121 56625349 + 0 NA Intergenic Intergenic -61502 NR_003935 644145 Hs.570825 NR_003935 LOC644145 - exocyst complex component 1 pseudogene pseudo 346 chr1 204471915 204472728 + 0 NA Intergenic L1MA9|LINE|L1 -12847 NM_002646 5287 Hs.497487 NM_002646 ENSG00000133056 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 3085 chr4 10285293 10285939 + 0 NA Intergenic Intergenic -167043 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 3171 chr4 83407183 83407995 + 0 NA intron (NM_001080506, intron 7 of 7) intron (NM_001080506, intron 7 of 7) 55956 NR_120457 58478 Hs.18442 NM_021204 ENSG00000145293 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 427 chr10 12582028 12582923 + 0 NA intron (NM_020397, intron 1 of 9) intron (NM_020397, intron 1 of 9) -38277 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 4735 chrY 13452253 13459832 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 1077347 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 82 chr1 37428260 37429339 + 0 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 71045 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 3464 chr5 138442330 138443277 + 0 NA intron (NM_001037633, intron 4 of 10) intron (NM_001037633, intron 4 of 10) 91262 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 2202 chr2 33454677 33456151 + 0 NA intron (NM_001166266, intron 5 of 28) intron (NM_001166266, intron 5 of 28) 95750 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 650 chr11 36184420 36185328 + 0 NA intron (NM_174902, intron 4 of 5) MamRep434|DNA|TcMar-Tigger -85423 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 4635 chr9_gl000199_random 128758 157316 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 1154 chr13 37687419 37688666 + 0 NA Intergenic Intergenic -8241 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 895 chr12 32229541 32230436 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -30197 NM_001003398 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD BICD cargo adaptor 1 protein-coding 1763 chr16 68353023 68354188 + 0 NA intron (NM_001184824, intron 2 of 16) intron (NM_001184824, intron 2 of 16) 8588 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 4499 chr9 15272107 15273427 + 0 NA intron (NM_152574, intron 1 of 19) intron (NM_152574, intron 1 of 19) -22569 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 69 chr1 32392371 32393415 + 0 NA intron (NM_080391, intron 1 of 5) L1PA15|LINE|L1 -7634 NM_001195101 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 4299 chr8 59745176 59746503 + 0 NA intron (NM_014729, intron 5 of 8) intron (NM_014729, intron 5 of 8) -173435 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1910 chr17 72681338 72682412 + 0 NA intron (NM_175738, intron 1 of 8) intron (NM_175738, intron 1 of 8) 14619 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 2762 chr21 45518712 45519509 + 0 NA intron (NM_003274, intron 21 of 22) L1MD2|LINE|L1 -8098 NM_005049 5822 Hs.449076 NM_005049 ENSG00000241945 PWP2 EHOC-17|PWP2H|UTP1 PWP2 periodic tryptophan protein homolog (yeast) protein-coding 3076 chr4 5960717 5961543 + 0 NA Intergenic Intergenic -36075 NR_039608 100616201 NR_039608 ENSG00000263631 MIR378D1 mir-378d-1 microRNA 378d-1 ncRNA 224 chr1 119719347 119720545 + 0 NA intron (NR_125975, intron 4 of 6) HERV9-int|LTR|ERV1 -36651 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 TrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 3608 chr6 21390593 21391348 + 0 NA Intergenic Intergenic 121153 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 3402 chr5 94116891 94118637 + 0 NA intron (NM_001297777, intron 15 of 19) intron (NM_001297777, intron 15 of 19) 163373 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 3264 chr4 182425860 182427054 + 0 NA Intergenic Intergenic -346155 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 2711 chr21 18914846 18915543 + 0 NA intron (NM_001207063, intron 1 of 4) intron (NM_001207063, intron 1 of 4) 29970 NM_001207063 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR coxsackie virus and adenovirus receptor protein-coding 3501 chr5 153491592 153492458 + 0 NA Intergenic Intergenic 73506 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibrillar associated protein 3 protein-coding 1982 chr18 35876888 35877744 + 0 NA Intergenic Intergenic 640218 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 2393 chr2 125077495 125078234 + 0 NA intron (NM_130773, intron 3 of 23) L1M5|LINE|L1 295000 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 3423 chr5 111598819 111599686 + 0 NA 3' UTR (NM_001347888, exon 6 of 6) 3' UTR (NM_001347888, exon 6 of 6) 35272 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 426 chr10 12523748 12524558 + 0 NA intron (NM_020397, intron 1 of 9) intron (NM_020397, intron 1 of 9) -96599 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 4127 chr7 130910835 130911534 + 0 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 101354 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 3222 chr4 130725372 130726126 + 0 NA Intergenic Intergenic -33116 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LOC101927282 - uncharacterized LOC101927282 ncRNA 1435 chr14 68022143 68022678 + 0 NA intron (NM_020715, intron 2 of 28) intron (NM_020715, intron 2 of 28) 22402 NM_020715 57475 Hs.594236 NM_020715 ENSG00000054690 PLEKHH1 - pleckstrin homology, MyTH4 and FERM domain containing H1 protein-coding 279 chr1 165805951 165807416 + 0 NA intron (NM_012474, intron 1 of 6) intron (NM_012474, intron 1 of 6) 9951 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 2408 chr2 134088637 134089959 + 0 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 65531 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 LOC101928161 - uncharacterized LOC101928161 ncRNA 483 chr10 79079100 79079700 + 0 NA intron (NM_001322838, intron 1 of 29) MLT1I|LTR|ERVL-MaLR 31119 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 498 chr10 90730932 90731564 + 0 NA intron (NM_001320855, intron 1 of 8) intron (NM_001320855, intron 1 of 8) -18668 NM_001613 59 Hs.500483 NM_001613 ENSG00000107796 ACTA2 AAT6|ACTSA|MYMY5 actin, alpha 2, smooth muscle, aorta protein-coding 4145 chr7 133219433 133220436 + 0 NA intron (NM_021807, intron 9 of 17) intron (NM_021807, intron 9 of 17) 244299 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 3520 chr5 157212559 157213363 + 0 NA 3' UTR (NM_001195555, exon 12 of 12) 3' UTR (NM_001195555, exon 12 of 12) 42258 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 2055 chr18 67075302 67076408 + 0 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 7571 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 1487 chr14 79487238 79488580 + 0 NA intron (NM_001330195, intron 15 of 20) L2c|LINE|L2 -178416 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 4311 chr8 72956474 72957253 + 0 NA intron (NM_007332, intron 17 of 26) intron (NM_007332, intron 17 of 26) 30956 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS transient receptor potential cation channel subfamily A member 1 protein-coding 4698 chrX 100465369 100466145 + 0 NA Intergenic Intergenic -9176 NM_001939 1821 Hs.159291 NM_001939 ENSG00000102385 DRP2 DRP-2 dystrophin related protein 2 protein-coding 2028 chr18 54755900 54756621 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -16910 NR_048536 100885779 Hs.742426 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 1540 chr14 92807293 92808329 + 0 NA intron (NM_153646, intron 2 of 16) intron (NM_153646, intron 2 of 16) 17659 NM_153646 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 3075 chr4 5805113 5805965 + 0 NA intron (NM_153717, intron 16 of 20) intron (NM_153717, intron 16 of 20) 84001 NM_001288662 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 1606 chr15 58685299 58686081 + 0 NA Intergenic Intergenic -38485 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 2064 chr18 69536231 69536906 + 0 NA Intergenic Intergenic -87106 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 99 chr1 44781781 44782730 + 0 NA intron (NM_001301701, intron 3 of 7) intron (NM_001301701, intron 3 of 7) 38696 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 3553 chr5 177383986 177384966 + 0 NA Intergenic Intergenic 38767 NM_006261 5626 Hs.158301 NM_006261 ENSG00000175325 PROP1 CPHD2|PROP-1 PROP paired-like homeobox 1 protein-coding 1933 chr18 8501032 8501641 + 0 NA Intergenic MER103C|DNA|hAT-Charlie -108107 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 2022 chr18 50281816 50282802 + 0 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) 415767 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 790 chr11 119670707 119671562 + 0 NA Intergenic MIRb|SINE|MIR 70841 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 533 chr10 122448622 122449376 + 0 NA Intergenic Intergenic 91538 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 4446 chr8 141048538 141050328 + 0 NA intron (NM_031466, intron 17 of 22) intron (NM_031466, intron 17 of 22) 61201 NR_144431 359809 Hs.26814 NR_144431 PEG13 - paternally expressed 13 ncRNA 2080 chr19 19892338 19893171 + 0 NA Intergenic Harlequin-int|LTR|ERV1 -5532 NR_026956 284440 Hs.665307 NR_026956 LINC00663 - long intergenic non-protein coding RNA 663 ncRNA 4448 chr8 142877183 142878340 + 0 NA Intergenic Intergenic -10087 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 3551 chr5 175311806 175312477 + 0 NA Intergenic MIRb|SINE|MIR 13640 NM_001008220 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 1122 chr13 22572886 22573672 + 0 NA Intergenic Intergenic -120980 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 2416 chr2 136792962 136794065 + 0 NA Intergenic Intergenic -50259 NM_001293312 1615 Hs.503787 NM_001349 ENSG00000115866 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 4643 chrUn_gl000216 66274 67417 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 1053 chr12 110692571 110693667 + 0 NA Intergenic AluJb|SINE|Alu -25913 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 414 chr1 245970458 245972161 + 0 NA intron (NM_001167740, intron 10 of 11) intron (NM_001167740, intron 10 of 11) 609405 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 462 chr10 50908896 50909612 + 0 NA intron (NM_182554, intron 2 of 2) intron (NM_182554, intron 2 of 2) 21570 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 3852 chr6 160476238 160477022 + 0 NA intron (NM_000876, intron 19 of 47) intron (NM_000876, intron 19 of 47) -37484 NR_003288 729603 Hs.674810 NR_003288 ENSG00000213073 LOC729603 - calcineurin like EF-hand protein 1 pseudogene pseudo 4558 chr9 87764879 87765842 + 0 NA Intergenic Intergenic 480068 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 263 chr1 163268060 163268992 + 0 NA intron (NM_001254748, intron 2 of 5) MER34C2|LTR|ERV1 23055 NR_045630 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G-protein signaling 5 protein-coding 3746 chr6 108059825 108060600 + 0 NA intron (NM_198081, intron 5 of 7) intron (NM_198081, intron 5 of 7) -6612 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 sex comb on midleg-like 4 (Drosophila) protein-coding 4536 chr9 72653026 72653767 + 0 NA Intergenic Intergenic -5101 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 4385 chr8 110698295 110699187 + 0 NA intron (NM_001099744, intron 1 of 7) intron (NM_001099744, intron 1 of 7) 5279 NM_001099743 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 3361 chr5 61463365 61464237 + 0 NA Intergenic Intergenic -138188 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 2985 chr3 139407932 139409187 + 0 NA Intergenic L1ME4a|LINE|L1 -11667 NM_178177 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 3593 chr6 19998555 19999563 + 0 NA Intergenic Intergenic 161458 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 3673 chr6 46347976 46348799 + 0 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) -54758 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 3210 chr4 129279598 129280385 + 0 NA Intergenic MIRb|SINE|MIR -69180 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 1409 chr14 61060034 61061920 + 0 NA Intergenic Intergenic -44957 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 4417 chr8 128269533 128270610 + 0 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 13189 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 4581 chr9 106771872 106772663 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR 10277 NR_109803 101928523 NR_109803 LOC101928523 - uncharacterized LOC101928523 ncRNA 1716 chr16 20621066 20626696 + 0 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat -36186 NM_182617 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium-chain family member 2B protein-coding 4219 chr8 5490922 5492021 + 0 NA Intergenic Intergenic -639143 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 293 chr1 171252784 171253413 + 0 NA intron (NM_001282694, intron 7 of 7) intron (NM_001282694, intron 7 of 7) 26036 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing monooxygenase 1 protein-coding 1272 chr13 104082253 104084916 + 0 NA Intergenic Intergenic 6034 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 1663 chr15 92115070 92115884 + 0 NA Intergenic LTR53|LTR|ERVL 108908 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 3818 chr6 141485843 141486827 + 0 NA Intergenic Intergenic 481384 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 2888 chr3 104274455 104275197 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -328721 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 469 chr10 72618187 72619062 + 0 NA intron (NM_003901, intron 6 of 14) L2c|LINE|L2 29387 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 635 chr11 27222806 27224075 + 0 NA intron (NR_125766, intron 2 of 4) intron (NR_125766, intron 2 of 4) 16875 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 1088 chr12 119695855 119696893 + 0 NA Intergenic MIRb|SINE|MIR 44811 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 1566 chr15 27329862 27330667 + 0 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) 76202 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 979 chr12 97396087 97396991 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR 95295 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 3950 chr7 61794072 61795080 + 0 NA Intergenic HSATII|Satellite|Satellite 969858 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 3737 chr6 104701822 104702816 + 0 NA Intergenic THE1C|LTR|ERVL-MaLR 605102 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 709 chr11 82609138 82610758 + 0 NA intron (NM_199418, intron 1 of 9) AluJo|SINE|Alu 1697 NM_199418 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 3603 chr6 21115045 21116452 + 0 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 396375 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 40 chr1 18252938 18253791 + 0 NA Intergenic Intergenic -138787 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 310 chr1 181494528 181495413 + 0 NA intron (NM_001205294, intron 3 of 45) intron (NM_001205294, intron 3 of 45) 42284 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 192 chr1 108090754 108091800 + 0 NA Intergenic L2a|LINE|L2 139849 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 1115 chr12 130941124 130942064 + 0 NA intron (NM_015347, intron 3 of 18) intron (NM_015347, intron 3 of 18) 60816 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 4421 chr8 131069453 131070715 + 0 NA intron (NM_001247996, intron 30 of 30) intron (NM_001247996, intron 30 of 30) 26930 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 4406 chr8 125055702 125057608 + 0 NA intron (NM_001039112, intron 20 of 40) intron (NM_001039112, intron 20 of 40) -3632 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 4320 chr8 81037868 81038553 + 0 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) -45144 NM_001287140 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 4262 chr8 28726748 28727803 + 0 NA intron (NM_001145159, intron 1 of 15) intron (NM_001145159, intron 1 of 15) 20157 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 3529 chr5 158497895 158498998 + 0 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 28324 NM_001324101 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 4303 chr8 61704890 61706109 + 0 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 51681 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 3764 chr6 112664204 112665478 + 0 NA Intergenic Intergenic -3691 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 2293 chr2 65882019 65882775 + 0 NA Intergenic Intergenic -222741 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 1707 chr16 17297252 17298050 + 0 NA intron (NM_022166, intron 3 of 11) intron (NM_022166, intron 3 of 11) 69290 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 3103 chr4 24889208 24890040 + 0 NA intron (NM_001330643, intron 1 of 12) intron (NM_001330643, intron 1 of 12) 24976 NM_001330644 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 267 chr1 163625432 163626480 + 0 NA Intergenic Intergenic -232975 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 543 chr10 130198515 130199961 + 0 NA Intergenic Intergenic 115024 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 1892 chr17 64419549 64420540 + 0 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -7072 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 2044 chr18 60822577 60823697 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 163476 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 4561 chr9 92235684 92236398 + 0 NA Intergenic Intergenic 16114 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 4553 chr9 85412170 85412961 + 0 NA Intergenic Intergenic 265478 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 4231 chr8 12070026 12071104 + 0 NA Intergenic Intergenic -18941 NR_003494 85002 Hs.675799 NM_001083537 ENSG00000186523 FAM86B1 - family with sequence similarity 86 member B1 protein-coding 1437 chr14 68680771 68681711 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 390932 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 4648 chrUn_gl000224 97421 98371 + 0 NA Intergenic HERV3-int|LTR|ERV1 -4607 NR_135481 100505874 Hs.559790 NR_135481 LOC100505874 - uncharacterized LOC100505874 ncRNA 2813 chr3 16342756 16343611 + 0 NA exon (NM_138381, exon 7 of 9) exon (NM_138381, exon 7 of 9) 36516 NM_001330670 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 2724 chr21 36101309 36101989 + 0 NA intron (NR_024351, intron 4 of 5) AluSz|SINE|Alu 7830 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 2517 chr2 208007963 208009495 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) -9868 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 757 chr11 111668887 111669572 + 0 NA intron (NM_001077690, intron 15 of 15) intron (NM_001077690, intron 15 of 15) -32060 NM_181699 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 2577 chr2 243012697 243013909 + 0 NA intron (NR_110220, intron 3 of 3) intron (NR_110220, intron 3 of 3) -17481 NR_130699 728323 Hs.380737 NR_024437 LINC01881 - long intergenic non-protein coding RNA 1881 ncRNA 9 chr1 6882413 6883604 + 0 NA intron (NM_001242701, intron 2 of 3) intron (NM_001242701, intron 2 of 3) 37624 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 3359 chr5 58994434 58995159 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 69642 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1740 chr16 51143940 51144788 + 0 NA Intergenic Intergenic 40144 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 1600 chr15 54302806 54303661 + 0 NA intron (NM_001329919, intron 1 of 31) intron (NM_001329919, intron 1 of 31) -1612 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 603 chr11 19837760 19838798 + 0 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -56650 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 90 chr1 38618140 38620052 + 0 NA Intergenic Intergenic 61343 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 4712 chrX 111310562 111311557 + 0 NA intron (NM_012471, intron 1 of 10) intron (NM_012471, intron 1 of 10) 14945 NM_012471 7224 Hs.657709 NM_012471 ENSG00000072315 TRPC5 PPP1R159|TRP5 transient receptor potential cation channel subfamily C member 5 protein-coding 3514 chr5 156893155 156893947 + 0 NA intron (NM_001172292, intron 2 of 4) L2c|LINE|L2 -6443 NR_136204 102724404 Hs.570889 NR_136204 ENSG00000251405 LOC102724404 - uncharacterized LOC102724404 ncRNA 565 chr11 11428550 11429660 + 0 NA intron (NM_198516, intron 3 of 10) intron (NM_198516, intron 3 of 10) -54201 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 3102 chr4 24838526 24839773 + 0 NA intron (NM_001330643, intron 5 of 12) intron (NM_001330643, intron 5 of 12) 42064 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3, extracellular protein-coding 3247 chr4 153945108 153946049 + 0 NA Intergenic Intergenic 81443 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 850 chr12 5570551 5571323 + 0 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) 29657 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 4057 chr7 107882577 107883292 + 0 NA intron (NM_005010, intron 3 of 27) intron (NM_005010, intron 3 of 27) -2320 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 4683 chrX 38969159 38969783 + 0 NA Intergenic L1MB2|LINE|L1 217145 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 2696 chr21 10819088 10820758 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 171020 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 1360 chr14 40497704 40498771 + 0 NA Intergenic L2|LINE|L2 -596533 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 3620 chr6 24212472 24213370 + 0 NA intron (NM_016356, intron 7 of 9) intron (NM_016356, intron 7 of 9) 86507 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 233 chr1 146807175 146807864 + 0 NA Intergenic Intergenic 93228 NM_001256337 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 1490 chr14 80071728 80072950 + 0 NA intron (NM_001105250, intron 2 of 6) intron (NM_001105250, intron 2 of 6) 326657 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2198 chr2 30797087 30798328 + 0 NA intron (NM_182551, intron 6 of 6) L4|LINE|RTE 127615 NM_001304445 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 2947 chr3 130073074 130073949 + 0 NA intron (NM_153264, intron 1 of 39) intron (NM_153264, intron 1 of 39) 9152 NR_022012 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 4199 chr7 158830943 158832172 + 0 NA intron (NM_001304522, intron 4 of 10) intron (NM_001304522, intron 4 of 10) 30512 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 4480 chr9 8887662 8888984 + 0 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 30305 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 4105 chr7 126358338 126359177 + 0 NA intron (NR_028041, intron 6 of 10) intron (NR_028041, intron 6 of 10) 339481 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 2288 chr2 60860426 60861311 + 0 NA Intergenic Intergenic -80235 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 2954 chr3 131289151 131289956 + 0 NA intron (NM_130808, intron 10 of 15) Charlie4z|DNA|hAT-Charlie -67693 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 11 chr1 7016036 7017194 + 0 NA intron (NM_015215, intron 3 of 22) intron (NM_015215, intron 3 of 22) 171231 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 4117 chr7 129912167 129913580 + 0 NA intron (NM_001869, intron 4 of 10) intron (NM_001869, intron 4 of 10) 6170 NM_001869 1358 Hs.490038 NM_001869 ENSG00000158516 CPA2 - carboxypeptidase A2 protein-coding 842 chr12 3647402 3648194 + 0 NA intron (NM_019854, intron 1 of 9) intron (NM_019854, intron 1 of 9) -45813 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 4288 chr8 42629183 42629989 + 0 NA Intergenic Intergenic -5657 NM_004198 8973 Hs.103128 NM_004198 ENSG00000147434 CHRNA6 CHNRA6 cholinergic receptor nicotinic alpha 6 subunit protein-coding 2000 chr18 42817155 42818168 + 0 NA intron (NM_001242692, intron 1 of 20) intron (NM_001242692, intron 1 of 20) 24714 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 3340 chr5 50185493 50186238 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 80156 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 2531 chr2 216197325 216198356 + 0 NA intron (NM_004044, intron 8 of 15) intron (NM_004044, intron 8 of 15) 21161 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 199 chr1 110784757 110786041 + 0 NA Intergenic MIR|SINE|MIR 32063 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 2410 chr2 135077051 135077953 + 0 NA intron (NM_002410, intron 4 of 15) intron (NM_002410, intron 4 of 15) 65672 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 1899 chr17 70880806 70881609 + 0 NA intron (NM_139177, intron 5 of 9) intron (NM_139177, intron 5 of 9) 207646 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP11 solute carrier family 39 member 11 protein-coding 4606 chr9 125892440 125893029 + 0 NA intron (NM_018387, intron 17 of 18) intron (NM_018387, intron 17 of 18) -14978 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 1929 chr18 3799250 3800275 + 0 NA intron (NM_001003809, intron 2 of 9) intron (NM_001003809, intron 2 of 9) 45596 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1737 chr16 49119742 49120483 + 0 NA Intergenic Intergenic 195630 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 3143 chr4 72996218 72996936 + 0 NA intron (NM_001144756, intron 3 of 4) LTR1B|LTR|ERV1 91728 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 3411 chr5 100108276 100108918 + 0 NA Intergenic Intergenic 43672 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 3284 chr5 5331955 5333028 + 0 NA Intergenic Intergenic -90295 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 3223 chr4 138613394 138614226 + 0 NA Intergenic Intergenic -160158 NM_001300828 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 3244 chr4 153848774 153849473 + 0 NA Intergenic Intergenic 8866 NR_136614 729870 Hs.310357 NR_136614 LOC729870 - uncharacterized LOC729870 ncRNA 2122 chr2 1943353 1944924 + 0 NA intron (NM_001329845, intron 9 of 24) intron (NM_001329845, intron 9 of 24) -195819 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 2280 chr2 59089282 59090551 + 0 NA intron (NR_033873, intron 3 of 13) MIR|SINE|MIR 342028 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 280 chr1 167226736 167227352 + 0 NA intron (NM_002697, intron 1 of 15) AluJr|SINE|Alu 36921 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 273 chr1 164192321 164193167 + 0 NA Intergenic L1PB2|LINE|L1 -335853 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 471 chr10 76192537 76193572 + 0 NA intron (NM_001202450, intron 6 of 9) intron (NM_001202450, intron 6 of 9) 96028 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 3498 chr5 153455577 153456556 + 0 NA Intergenic Intergenic 37547 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibrillar associated protein 3 protein-coding 4177 chr7 146973880 146974673 + 0 NA intron (NM_014141, intron 8 of 23) intron (NM_014141, intron 8 of 23) 100937 NR_031645 100313895 NR_031645 ENSG00000221442 MIR548F4 MIR548F-4|MIRN548F4|hsa-mir-548f-4 microRNA 548f-4 ncRNA 2262 chr2 51066901 51068172 + 0 NA intron (NM_001135659, intron 5 of 23) intron (NM_001135659, intron 5 of 23) -144136 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 1509 chr14 82698383 82699086 + 0 NA Intergenic L2a|LINE|L2 -609329 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 1936 chr18 10803904 10804807 + 0 NA intron (NM_022068, intron 8 of 51) intron (NM_022068, intron 8 of 51) -44708 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 2912 chr3 115724109 115724867 + 0 NA intron (NM_002338, intron 3 of 6) intron (NM_002338, intron 3 of 6) -354383 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 1325 chr14 28599780 28600709 + 0 NA Intergenic Intergenic -497760 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 1643 chr15 76692137 76693047 + 0 NA intron (NM_001145923, intron 27 of 31) intron (NM_001145923, intron 27 of 31) 63527 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 131 chr1 61600794 61601637 + 0 NA intron (NM_001145511, intron 2 of 10) AluJr|SINE|Alu 53235 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 1565 chr15 27326694 27327528 + 0 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) 79355 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 4277 chr8 33312892 33313919 + 0 NA intron (NM_032664, intron 2 of 4) Charlie24|DNA|hAT-Charlie 17259 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 4075 chr7 112843409 112844555 + 0 NA Intergenic Intergenic -85345 NR_024412 401397 Hs.117929 NR_015442 ENSG00000214194 LINC00998 - long intergenic non-protein coding RNA 998 ncRNA 1502 chr14 81610685 81612786 + 0 NA 3' UTR (NM_000369, exon 10 of 10) 3' UTR (NM_000369, exon 10 of 10) 57443 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 1872 chr17 52996347 52997357 + 0 NA intron (NM_001321176, intron 8 of 16) intron (NM_001321176, intron 8 of 16) 18800 NM_001321173 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 4743 chrY 13864349 13864967 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 668731 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 4665 chrX 11400949 11401551 + 0 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) 44655 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 3488 chr5 148922301 148923094 + 0 NA intron (NM_001025105, intron 2 of 10) intron (NM_001025105, intron 2 of 10) 7197 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 2935 chr3 124969750 124970392 + 0 NA intron (NM_021964, intron 7 of 8) L1ME3A|LINE|L1 -38462 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 4270 chr8 31965610 31966916 + 0 NA intron (NR_104156, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 82529 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 3875 chr7 14362784 14363757 + 0 NA intron (NM_145695, intron 22 of 23) L2a|LINE|L2 -332220 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 2513 chr2 206586590 206587560 + 0 NA intron (NM_018534, intron 3 of 15) intron (NM_018534, intron 3 of 15) 39851 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 37 chr1 18187796 18188655 + 0 NA Intergenic Intergenic 106417 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 855 chr12 11988892 11989789 + 0 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 186552 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 3659 chr6 41149731 41150736 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 18692 NM_024807 79865 Hs.164797 NM_024807 ENSG00000112195 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells like 2 protein-coding 1706 chr16 17074371 17075151 + 0 NA Intergenic Intergenic -153600 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 1839 chr17 35047466 35048484 + 0 NA Intergenic Intergenic 89950 NM_024864 79922 Hs.194864 NM_024864 ENSG00000278619 MRM1 - mitochondrial rRNA methyltransferase 1 protein-coding 1788 chr16 79043740 79044592 + 0 NA intron (NM_001291997, intron 7 of 7) L2b|LINE|L2 590456 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 2186 chr2 26836474 26838289 + 0 NA intron (NM_001029881, intron 3 of 6) intron (NM_001029881, intron 3 of 6) 26855 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 680 chr11 67593578 67594657 + 0 NA Intergenic Intergenic -21310 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 3962 chr7 68389783 68390833 + 0 NA Intergenic Intergenic 672173 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 1147 chr13 37082061 37082906 + 0 NA Intergenic Intergenic 76074 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 2783 chr22 33757808 33758664 + 0 NA intron (NM_004737, intron 10 of 15) intron (NM_004737, intron 10 of 15) 74419 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 334 chr1 202431161 202432448 + 0 NA promoter-TSS (NM_032104) promoter-TSS (NM_032104) -67 NM_032104 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 3902 chr7 27986667 27987486 + 0 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 207362 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 2292 chr2 64558072 64559542 + 0 NA Intergenic Intergenic -9086 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 3582 chr6 18861230 18862132 + 0 NA Intergenic Intergenic 289666 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 1997 chr18 42525728 42527097 + 0 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 23719 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 4675 chrX 19195334 19196395 + 0 NA Intergenic Intergenic -55109 NM_001184837 10149 Hs.146978 NM_005756 ENSG00000173698 ADGRG2 CBAVDX|EDDM6|GPR64|HE6|TM7LN2 adhesion G protein-coupled receptor G2 protein-coding 1680 chr16 6523977 6524866 + 0 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -299389 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 2879 chr3 97661126 97662565 + 0 NA 3' UTR (NM_032778, exon 10 of 10) 3' UTR (NM_032778, exon 10 of 10) 29450 NM_001261829 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 1139 chr13 32602668 32603381 + 0 NA intron (NR_103839, intron 1 of 3) intron (NR_103839, intron 1 of 3) -2413 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 1319 chr14 26547505 26548326 + 0 NA Intergenic Intergenic 519045 NM_006491 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 4043 chr7 102338301 102338922 + 0 NA Intergenic Intergenic -26435 NM_032959 246721 Hs.610255 NM_032958 ENSG00000228049 POLR2J2 HRPB11B|RPB11b1 RNA polymerase II subunit J2 protein-coding 1826 chr17 32308695 32309669 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 174643 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 2454 chr2 160249826 160250736 + 0 NA intron (NM_001329857, intron 20 of 36) intron (NM_001329857, intron 20 of 36) -106971 NM_001330277 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 2077 chr19 16721710 16722719 + 0 NA intron (NM_004831, intron 1 of 2) intron (NM_004831, intron 1 of 2) 16801 NM_004831 9441 Hs.715040 NM_004831 ENSG00000105085 MED26 CRSP7|CRSP70 mediator complex subunit 26 protein-coding 2036 chr18 56763189 56764340 + 0 NA Intergenic Intergenic -43325 NM_033280 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 1747 chr16 52859559 52860420 + 0 NA Intergenic L2a|LINE|L2 -219102 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility candidate 16 (non-protein coding) ncRNA 820 chr11 126762280 126763067 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -47969 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 1799 chr17 2365337 2366786 + 0 NA intron (NM_024086, intron 6 of 9) MSTA|LTR|ERVL-MaLR -47331 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 1552 chr14 98813675 98814396 + 0 NA Intergenic Intergenic -363915 NM_182560 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 1194 chr13 61482907 61483632 + 0 NA Intergenic Intergenic 236180 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 3716 chr6 90686859 90688570 + 0 NA intron (NM_021813, intron 6 of 8) intron (NM_021813, intron 6 of 8) 83526 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 4433 chr8 135576973 135579490 + 0 NA intron (NM_001029939, intron 11 of 16) intron (NM_001029939, intron 11 of 16) -32083 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 41 chr1 18298445 18299304 + 0 NA Intergenic Intergenic -93277 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 3014 chr3 160456659 160457377 + 0 NA Intergenic LTR16B2|LTR|ERVL -16974 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 3084 chr4 10274247 10275701 + 0 NA Intergenic Intergenic -156401 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 2887 chr3 103270020 103270729 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -27414 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 1453 chr14 76634887 76635719 + 0 NA 3' UTR (NM_001322031, exon 3 of 3) 3' UTR (NM_001322031, exon 3 of 3) 14606 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 866 chr12 15158010 15158776 + 0 NA intron (NR_120466, intron 3 of 3) intron (NR_120466, intron 3 of 3) 3626 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 2223 chr2 40601727 40602615 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 55273 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 3532 chr5 160055624 160056735 + 0 NA intron (NM_025153, intron 13 of 25) intron (NM_025153, intron 13 of 25) 143820 NR_029701 406938 NR_029701 ENSG00000253522 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 770 chr11 115015369 115016506 + 0 NA Intergenic Intergenic -188359 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 3380 chr5 71126239 71127005 + 0 NA Intergenic Intergenic 111632 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 4292 chr8 43792950 43795244 + 0 NA Intergenic ALR/Alpha|Satellite|centr 646512 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 1097 chr12 122623183 122624408 + 0 NA intron (NM_014938, intron 15 of 16) intron (NM_014938, intron 15 of 16) -28471 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 641 chr11 33682790 33683971 + 0 NA intron (NM_012194, intron 19 of 19) AluSx1|SINE|Alu 38906 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 4734 chrY 13140929 13141272 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 1392289 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 838 chr12 2444032 2444847 + 0 NA intron (NM_001129830, intron 3 of 47) intron (NM_001129830, intron 3 of 47) 65497 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 2962 chr3 132835777 132836748 + 0 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) -7403 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124 transmembrane protein 108 protein-coding 2664 chr20 49154118 49155220 + 0 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 27811 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 616 chr11 21918766 21919538 + 0 NA Intergenic Intergenic -295570 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|TMEM16E anoctamin 5 protein-coding 1121 chr13 22531708 22532515 + 0 NA Intergenic Intergenic -79812 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 870 chr12 16681142 16682580 + 0 NA Intergenic Intergenic 76452 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 4245 chr8 20550579 20551513 + 0 NA Intergenic Intergenic -260098 NR_130773 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 896 chr12 32370453 32371627 + 0 NA intron (NM_001003398, intron 2 of 8) intron (NM_001003398, intron 2 of 8) 110855 NM_001714 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD BICD cargo adaptor 1 protein-coding 3530 chr5 159854270 159855304 + 0 NA exon (NM_001282382, exon 4 of 5) exon (NM_001282382, exon 4 of 5) 5870 NM_001282383 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 pituitary tumor-transforming 1 protein-coding 3672 chr6 46237104 46237763 + 0 NA intron (NM_001251973, intron 2 of 4) LTR16A|LTR|ERVL -6628 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 2903 chr3 114120720 114121516 + 0 NA intron (NM_001164343, intron 8 of 11) intron (NM_001164343, intron 8 of 11) -18629 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 2165 chr2 12216637 12217916 + 0 NA intron (NR_110196, intron 2 of 5) MLT1I|LTR|ERVL-MaLR 70034 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 2347 chr2 92289639 92292033 + 0 NA Intergenic ALR/Alpha|Satellite|centr 161677 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 4310 chr8 72825582 72826320 + 0 NA intron (NR_033652, intron 2 of 4) intron (NR_033652, intron 2 of 4) -69220 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 777 chr11 115254661 115255864 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -12212 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 3609 chr6 21523703 21525947 + 0 NA Intergenic Intergenic -12702 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 2786 chr22 37431219 37432128 + 0 NA Intergenic Intergenic -15449 NM_001270483 7263 Hs.474783 NM_003312 ENSG00000128311 TST RDS thiosulfate sulfurtransferase protein-coding 3968 chr7 69110951 69111713 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 47427 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 1672 chr16 5577558 5578298 + 0 NA Intergenic Intergenic 88323 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 2325 chr2 80670122 80671195 + 0 NA intron (NM_001282597, intron 9 of 18) MIR3|SINE|MIR 130154 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CT114|CTNR catenin alpha 2 protein-coding 1685 chr16 7277112 7278034 + 0 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -105178 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 1891 chr17 64171842 64172790 + 0 NA intron (NM_001199165, intron 3 of 26) intron (NM_001199165, intron 3 of 26) 15671 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 3941 chr7 55208113 55209213 + 0 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 31153 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 2768 chr22 18877985 18878725 + 0 NA intron (NR_136571, intron 1 of 11) HSATI|Satellite|Satellite 3589 NR_136571 100996432 Hs.631668 NR_136571 LINC01663 - long intergenic non-protein coding RNA 1663 ncRNA 562 chr11 10524983 10526511 + 0 NA intron (NM_001025389, intron 13 of 14) intron (NM_001025389, intron 13 of 14) 4126 NR_039705 100616263 NR_039705 ENSG00000255823 MIR4485 mir-4485 microRNA 4485 ncRNA 2269 chr2 53736660 53738239 + 0 NA Intergenic Intergenic -257471 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 1102 chr12 128251824 128253211 + 0 NA Intergenic Intergenic -112384 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 183 chr1 95531933 95533137 + 0 NA intron (NM_144988, intron 1 of 3) intron (NM_144988, intron 1 of 3) 5383 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 2544 chr2 222455418 222456246 + 0 NA Intergenic Intergenic -16910 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 1478 chr14 79140255 79141844 + 0 NA intron (NM_001330195, intron 6 of 20) intron (NM_001330195, intron 6 of 20) 270975 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2541 chr2 221174822 221175892 + 0 NA Intergenic Intergenic -404071 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 439 chr10 24504348 24504973 + 0 NA intron (NM_001282768, intron 1 of 17) intron (NM_001282768, intron 1 of 17) 6940 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 362 chr1 206999625 207000436 + 0 NA intron (NM_153758, intron 1 of 5) intron (NM_153758, intron 1 of 5) -2192 NM_013371 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 1379 chr14 47285748 47288053 + 0 NA Intergenic Intergenic -165872 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 2607 chr20 10844395 10845287 + 0 NA Intergenic Intergenic 45079 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 3345 chr5 51335002 51336545 + 0 NA Intergenic Intergenic -656607 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 4598 chr9 119721138 119722141 + 0 NA intron (NM_014010, intron 9 of 21) intron (NM_014010, intron 9 of 21) 221841 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 3798 chr6 124931513 124932329 + 0 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 327770 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 2496 chr2 182098579 182100107 + 0 NA intron (NR_130784, intron 2 of 4) intron (NR_130784, intron 2 of 4) 71036 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 407 chr1 235014678 235015959 + 0 NA Intergenic Intergenic 84428 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 3686 chr6 54226767 54227893 + 0 NA intron (NM_014464, intron 9 of 10) Tigger1|DNA|TcMar-Tigger 54127 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 4374 chr8 103984050 103986090 + 0 NA intron (NR_126338, intron 3 of 3) AluSx1|SINE|Alu -48178 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 18 chr1 9621284 9622489 + 0 NA intron (NM_032315, intron 2 of 6) intron (NM_032315, intron 2 of 6) 22358 NM_032315 84275 Hs.568613 NM_032315 ENSG00000171612 SLC25A33 BMSC-MCP|PNC1 solute carrier family 25 member 33 protein-coding 376 chr1 210018146 210019584 + 0 NA intron (NM_014388, intron 11 of 11) intron (NM_014388, intron 11 of 11) 17553 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 DIEXF C1orf107|DEF|DJ434O14.5|UTP25 digestive organ expansion factor homolog (zebrafish) protein-coding 4511 chr9 28215411 28216569 + 0 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 503313 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1393 chr14 56222662 56223719 + 0 NA Intergenic Intergenic -9773 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 1167 chr13 44623137 44624474 + 0 NA Intergenic Intergenic 27334 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 609 chr11 20695211 20696289 + 0 NA intron (NM_201551, intron 1 of 18) intron (NM_201551, intron 1 of 18) 4653 NM_001288714 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 3652 chr6 39314649 39316165 + 0 NA intron (NM_145027, intron 19 of 22) MIR3|SINE|MIR -25077 NM_001135106 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 3373 chr5 66583384 66584110 + 0 NA Intergenic Intergenic -91130 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 148 chr1 75429996 75430804 + 0 NA Intergenic Intergenic -163719 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 1343 chr14 36755340 36756458 + 0 NA Intergenic Intergenic 33983 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 2489 chr2 179166080 179168000 + 0 NA intron (NM_001201481, intron 2 of 23) intron (NM_001201481, intron 2 of 23) -17931 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 2655 chr20 43214001 43215308 + 0 NA intron (NM_181805, intron 3 of 5) intron (NM_181805, intron 3 of 5) 3464 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 726 chr11 92766212 92768367 + 0 NA Intergenic Intergenic 64500 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 2509 chr2 203176280 203177309 + 0 NA Intergenic Intergenic 19020 NR_003031 692058 NR_003031 ENSG00000238317 SNORD11 HBII-95 small nucleolar RNA, C/D box 11 snoRNA 2955 chr3 131449310 131450468 + 0 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) -228029 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 2703 chr21 17657923 17658786 + 0 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 91655 NR_027791 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 4210 chr8 3582935 3584179 + 0 NA intron (NM_033225, intron 6 of 69) MLT1F1|LTR|ERVL-MaLR -997566 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 4110 chr7 126884575 126886163 + 0 NA intron (NM_001127323, intron 1 of 10) intron (NM_001127323, intron 1 of 10) -1800 NR_028041 2918 Hs.449625 NM_000845 ENSG00000179603 GRM8 GLUR8|GPRC1H|MGLUR8|mGlu8 glutamate metabotropic receptor 8 protein-coding 157 chr1 83727435 83728177 + 0 NA Intergenic Intergenic -275915 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 964 chr12 79715268 79716190 + 0 NA intron (NM_001291901, intron 7 of 9) intron (NM_001291901, intron 7 of 9) -97308 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 2009 chr18 45626225 45627339 + 0 NA intron (NM_001318841, intron 3 of 4) intron (NM_001318841, intron 3 of 4) 36898 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 1909 chr17 72629239 72630222 + 0 NA Intergenic Intergenic -9833 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 4192 chr7 157947432 157948087 + 0 NA intron (NM_130843, intron 6 of 21) intron (NM_130843, intron 6 of 21) 300482 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 935 chr12 68271322 68272218 + 0 NA Intergenic MER21-int|LTR|ERVL -51245 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 2627 chr20 19787479 19788484 + 0 NA Intergenic Intergenic -79184 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 3576 chr6 15062528 15063312 + 0 NA Intergenic MER46C|DNA|TcMar-Tigger -183286 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1213 chr13 94321780 94323350 + 0 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 188161 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 1093 chr12 119824072 119825205 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 52121 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 81 chr1 37399616 37400261 + 0 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 99906 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 1300 chr13 111564258 111565570 + 0 NA intron (NR_104586, intron 1 of 4) Tigger8|DNA|TcMar-Tigger 2540 NR_104586 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 624 chr11 22802371 22803273 + 0 NA intron (NM_001143830, intron 7 of 7) intron (NM_001143830, intron 7 of 7) 48103 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 2598 chr20 8680803 8681504 + 0 NA intron (NM_182734, intron 11 of 32) intron (NM_182734, intron 11 of 32) -368548 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 371 chr1 209185625 209187205 + 0 NA Intergenic Intergenic -312386 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 204 chr1 113304468 113305682 + 0 NA Intergenic Intergenic 41886 NM_001004440 284467 Hs.439116 NM_182759 ENSG00000184599 FAM19A3 TAFA-3|TAFA3 family with sequence similarity 19 member A3, C-C motif chemokine like protein-coding 1041 chr12 107178879 107179600 + 0 NA intron (NM_018157, intron 2 of 8) L2c|LINE|L2 -10630 NR_040246 100287944 Hs.742087 NR_040246 ENSG00000257545 LOC100287944 - uncharacterized LOC100287944 ncRNA 1990 chr18 39248107 39248938 + 0 NA Intergenic Intergenic -147961 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 4611 chr9 128350787 128351724 + 0 NA intron (NM_001006617, intron 4 of 11) L2b|LINE|L2 118258 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 3254 chr4 166371431 166372784 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 64713 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 814 chr11 123339768 123340437 + 0 NA Intergenic L2c|LINE|L2 -40485 NM_001330396 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 2492 chr2 179199842 179201391 + 0 NA intron (NM_001201481, intron 8 of 23) intron (NM_001201481, intron 8 of 23) 15645 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 2109 chr19 56319817 56321251 + 0 NA exon (NM_001297743, exon 2 of 9) exon (NM_001297743, exon 2 of 9) 22926 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 884 chr12 27024602 27026266 + 0 NA Intergenic Intergenic -39303 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 3539 chr5 168324891 168326155 + 0 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -114709 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 749 chr11 110156606 110157521 + 0 NA intron (NM_001260494, intron 1 of 11) intron (NM_001260494, intron 1 of 11) 10374 NM_001260495 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 345 chr1 204415413 204416453 + 0 NA intron (NM_002646, intron 16 of 33) intron (NM_002646, intron 16 of 33) -34988 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 3323 chr5 37847696 37848887 + 0 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 7751 NR_103441 100861519 Hs.536820 NM_001278094 ENSG00000248587 GDNF-AS1 GDNFOS GDNF antisense RNA 1 (head to head) protein-coding 4408 chr8 125685448 125686124 + 0 NA intron (NM_014751, intron 3 of 13) intron (NM_014751, intron 3 of 13) 54962 NM_001282971 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS1, I-BAR domain containing protein-coding 613 chr11 21394987 21396338 + 0 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 704565 NM_001288714 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 952 chr12 78213988 78214800 + 0 NA Intergenic Intergenic -10675 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 2691 chr21 10713712 10723601 + 0 NA Intergenic ALR/Alpha|Satellite|centr 272287 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 4498 chr9 15140385 15141082 + 0 NA Intergenic Intergenic 109465 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 1071 chr12 115598126 115599102 + 0 NA Intergenic Intergenic -476645 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 3058 chr3 188163533 188164534 + 0 NA intron (NM_001167671, intron 3 of 10) intron (NM_001167671, intron 3 of 10) 122421 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 4331 chr8 85185062 85186035 + 0 NA intron (NM_001100391, intron 1 of 8) MLT1F2|LTR|ERVL-MaLR 88448 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 253 chr1 162136369 162137430 + 0 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) 10002 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 4158 chr7 137488631 137490418 + 0 NA intron (NM_001321708, intron 1 of 32) intron (NM_001321708, intron 1 of 32) 41554 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 3278 chr5 2154676 2155497 + 0 NA Intergenic Intergenic 157229 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 2427 chr2 145219452 145220773 + 0 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -57069 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 63 chr1 27625698 27628677 + 0 NA intron (NM_015023, intron 12 of 15) intron (NM_015023, intron 12 of 15) -21449 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 1637 chr15 70578284 70579412 + 0 NA Intergenic Intergenic -188592 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 179 chr1 90878686 90879679 + 0 NA Intergenic Intergenic 303612 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 1105 chr12 128617822 128619057 + 0 NA Intergenic MLT1E2|LTR|ERVL-MaLR 15677 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LOC101927694 - uncharacterized LOC101927694 ncRNA 3705 chr6 80506598 80508468 + 0 NA Intergenic Intergenic 14430 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 1334 chr14 31333794 31334612 + 0 NA Intergenic MER105|DNA|DNA -9538 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9 cochlin protein-coding 3948 chr7 61787073 61788080 + 0 NA Intergenic HSATII|Satellite|Satellite 976858 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 2499 chr2 191064062 191064909 + 0 NA 5' UTR (NM_001042521, exon 3 of 3) 5' UTR (NM_001042521, exon 3 of 3) 18804 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 3776 chr6 118975004 118975854 + 0 NA intron (NM_001178035, intron 1 of 13) AluJo|SINE|Alu -2409 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 2805 chr3 7840651 7841315 + 0 NA Intergenic Intergenic 217011 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 2096 chr19 38566657 38567618 + 0 NA intron (NM_015073, intron 2 of 21) Tigger2|DNA|TcMar-Tigger 147753 NM_001289978 8193 Hs.631576 NM_004647 ENSG00000011332 DPF1 BAF45b|NEUD4|neuro-d4 double PHD fingers 1 protein-coding 1784 chr16 78217750 78218987 + 0 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 85058 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 938 chr12 68736203 68737218 + 0 NA Intergenic LTR78|LTR|ERV1 -10549 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 4016 chr7 82896170 82897289 + 0 NA Intergenic Intergenic -104532 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 3882 chr7 20554892 20555674 + 0 NA Intergenic Intergenic -99962 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 2149 chr2 7095727 7096390 + 0 NA intron (NM_014746, intron 2 of 8) intron (NM_014746, intron 2 of 8) -37245 NR_033997 386597 Hs.559010 NR_033997 ENSG00000228203 RNF144A-AS1 - RNF144A antisense RNA 1 ncRNA 1830 chr17 32707614 32708376 + 0 NA Intergenic Intergenic -17743 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 1620 chr15 62652206 62653067 + 0 NA Intergenic Intergenic 17408 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 2241 chr2 48959942 48960869 + 0 NA intron (NM_000233, intron 1 of 10) intron (NM_000233, intron 1 of 10) 22475 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 3917 chr7 30430590 30431427 + 0 NA intron (NR_108081, intron 1 of 2) intron (NR_108081, intron 1 of 2) 507 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 3060 chr3 189933705 189934571 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -93912 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 3167 chr4 82552855 82553548 + 0 NA Intergenic Intergenic -160119 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 4203 chr8 1296476 1297318 + 0 NA intron (NM_001346810, intron 3 of 14) intron (NM_001346810, intron 3 of 14) -46074 NR_111948 286083 Hs.382131 NR_033895 ENSG00000275427 LOC286083 - uncharacterized LOC286083 ncRNA 2370 chr2 106342288 106343120 + 0 NA Intergenic Intergenic -18816 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 929 chr12 64662534 64663618 + 0 NA intron (NM_001170633, intron 12 of 12) intron (NM_001170633, intron 12 of 12) -47000 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 2554 chr2 229477732 229479102 + 0 NA Intergenic Intergenic -432056 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 1583 chr15 34182884 34183463 + 0 NA intron (NM_020371, intron 2 of 5) AluJb|SINE|Alu -77342 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 1538 chr14 91834842 91837018 + 0 NA intron (NM_001080414, intron 3 of 29) intron (NM_001080414, intron 3 of 29) 48258 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 258 chr1 162676030 162676788 + 0 NA intron (NM_001014796, intron 3 of 18) intron (NM_001014796, intron 3 of 18) 74181 NM_001014796 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10 discoidin domain receptor tyrosine kinase 2 protein-coding 2620 chr20 17321608 17323280 + 0 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 114847 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 4022 chr7 84343907 84344639 + 0 NA Intergenic Intergenic 182481 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 2138 chr2 4506499 4507363 + 0 NA Intergenic Intergenic 196881 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 1055 chr12 111155790 111156975 + 0 NA Intergenic Intergenic 24401 NM_001244974 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 4050 chr7 106765659 106766604 + 0 NA intron (NM_002736, intron 3 of 10) intron (NM_002736, intron 3 of 10) -43275 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 3610 chr6 22227795 22228393 + 0 NA Intergenic Intergenic 69636 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 2447 chr2 153305786 153306520 + 0 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 114402 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 3140 chr4 72126987 72128005 + 0 NA intron (NM_001134742, intron 3 of 24) intron (NM_001134742, intron 3 of 24) 74493 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 141 chr1 73067823 73068998 + 0 NA Intergenic L2|LINE|L2 -320133 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 3043 chr3 177528909 177529793 + 0 NA Intergenic FLAM_A|SINE|Alu -5302 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 4228 chr8 9047742 9048604 + 0 NA intron (NR_125431, intron 2 of 3) intron (NR_125431, intron 2 of 3) 1664 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 4520 chr9 38361285 38361851 + 0 NA Intergenic MIR3|SINE|MIR -31093 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 1230 chr13 99057262 99058716 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 116390 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 2793 chr22 47675954 47677403 + 0 NA Intergenic Intergenic -64643 NR_144462 339685 Hs.434351 NR_038922 LOC339685 - uncharacterized LOC339685 ncRNA 2993 chr3 140397631 140398708 + 0 NA intron (NM_152616, intron 1 of 4) intron (NM_152616, intron 1 of 4) 1303 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 1917 chr17 78620120 78620852 + 0 NA intron (NM_001163034, intron 3 of 29) intron (NM_001163034, intron 3 of 29) 101861 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1713 chr16 19553171 19554180 + 0 NA intron (NM_001323577, intron 6 of 12) intron (NM_001323577, intron 6 of 12) -13062 NM_001300743 57020 Hs.654964 NM_020314 ENSG00000103544 C16orf62 - chromosome 16 open reading frame 62 protein-coding 3590 chr6 19632428 19633398 + 0 NA Intergenic Intergenic 172077 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 1060 chr12 113296433 113297282 + 0 NA intron (NR_145127, intron 5 of 22) intron (NR_145127, intron 5 of 22) -47725 NM_016816 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 3759 chr6 111952800 111953950 + 0 NA Intergenic Intergenic -25898 NM_147686 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 3722 chr6 92749924 92751185 + 0 NA Intergenic Intergenic -350408 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility candidate 6 (non-protein coding) ncRNA 2420 chr2 137757817 137759567 + 0 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 235560 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 2104 chr19 49418791 49419813 + 0 NA intron (NM_006184, intron 7 of 12) L1MB2|LINE|L1 2846 NR_046633 100874085 Hs.569933 NR_046633 ENSG00000235191 NUCB1-AS1 - NUCB1 antisense RNA 1 ncRNA 2894 chr3 107709770 107710201 + 0 NA Intergenic Intergenic 99950 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 2126 chr2 2289985 2290896 + 0 NA intron (NM_001329851, intron 1 of 23) intron (NM_001329851, intron 1 of 23) -32564 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 4450 chr8 143143913 143145064 + 0 NA Intergenic Intergenic -64831 NR_130468 100616374 NR_130468 ENSG00000265612 MIR4539 - microRNA 4539 ncRNA 2858 chr3 62709131 62710084 + 0 NA intron (NM_183394, intron 3 of 27) intron (NM_183394, intron 3 of 27) 151457 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 900 chr12 34845896 34847402 + 0 NA Intergenic ALR/Alpha|Satellite|centr 671433 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 4221 chr8 5924880 5926060 + 0 NA Intergenic Intergenic 338599 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 318 chr1 182637578 182638468 + 0 NA intron (NM_033345, intron 2 of 5) intron (NM_033345, intron 2 of 5) 4044 NM_033345 85397 Hs.20982 NM_033345 ENSG00000135824 RGS8 - regulator of G-protein signaling 8 protein-coding 2526 chr2 211495397 211496269 + 0 NA intron (NM_001122634, intron 11 of 27) intron (NM_001122634, intron 11 of 27) 13538 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 972 chr12 92664154 92664763 + 0 NA Intergenic L2c|LINE|L2 124597 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 473 chr10 77183685 77184646 + 0 NA Intergenic Intergenic -7239 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 C10orf11 CDA017 chromosome 10 open reading frame 11 protein-coding 2572 chr2 237726653 237729107 + 0 NA Intergenic Intergenic 236930 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 1774 chr16 71018345 71019202 + 0 NA intron (NM_001270974, intron 28 of 85) intron (NM_001270974, intron 28 of 85) -183712 NM_018052 55697 Hs.445061 NM_018052 ENSG00000103043 VAC14 ArPIKfyve|SNDC|TAX1BP2|TRX Vac14, PIKFYVE complex component protein-coding 3 chr1 4630968 4631862 + 0 NA Intergenic MIRb|SINE|MIR -83690 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 248 chr1 154715686 154716586 + 0 NA intron (NM_001204087, intron 3 of 8) MER47B|DNA|TcMar-Tigger -115680 NM_001025107 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 3888 chr7 24252434 24253651 + 0 NA Intergenic Intergenic -70765 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 802 chr11 122012139 122013144 + 0 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) 4660 NR_029477 406882 NR_029477 ENSG00000198975 MIRLET7A2 LET7A2|MIRNLET7A2|let-7a-2 microRNA let-7a-2 ncRNA 3924 chr7 39123618 39124573 + 0 NA intron (NM_001166018, intron 2 of 10) intron (NM_001166018, intron 2 of 10) -70928 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 3420 chr5 110883788 110885437 + 0 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -36317 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 2063 chr18 69427546 69428470 + 0 NA intron (NR_126324, intron 1 of 4) Tigger2b_Pri|DNA|TcMar-Tigger 21454 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 3723 chr6 93609773 93610431 + 0 NA Intergenic Intergenic 519198 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 3269 chr4 183477153 183478146 + 0 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 313065 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 2632 chr20 20488287 20489183 + 0 NA intron (NM_020343, intron 33 of 39) intron (NM_020343, intron 33 of 39) 139970 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 1049 chr12 109348646 109349824 + 0 NA intron (NM_018711, intron 5 of 14) intron (NM_018711, intron 5 of 14) 75378 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 4544 chr9 81586389 81587939 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 173417 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 2812 chr3 15973855 15974678 + 0 NA Intergenic Intergenic 58988 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 1488 chr14 79759646 79760747 + 0 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 14514 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 560 chr11 10400996 10402053 + 0 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) -70344 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 2830 chr3 40065849 40066949 + 0 NA intron (NR_104316, intron 2 of 16) MIRb|SINE|MIR -75103 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 798 chr11 121434702 121436067 + 0 NA intron (NM_003105, intron 21 of 47) AluJb|SINE|Alu 112472 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 898 chr12 34839312 34840160 + 0 NA Intergenic ALR/Alpha|Satellite|centr 664520 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 3892 chr7 26100329 26101528 + 0 NA Intergenic Intergenic -90919 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 2725 chr21 36272483 36273269 + 0 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -11889 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 3670 chr6 45860170 45861196 + 0 NA Intergenic CR1_Mam|LINE|CR1 44651 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 4316 chr8 73786562 73787404 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -134114 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 1273 chr13 104190872 104192217 + 0 NA Intergenic Intergenic 113994 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 2516 chr2 207566522 207567561 + 0 NA intron (NM_001093730, intron 5 of 11) intron (NM_001093730, intron 5 of 11) 16079 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 451 chr10 38880272 38882464 + 0 NA Intergenic HSATII|Satellite|Satellite -108359 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 3362 chr5 61979952 61980794 + 0 NA Intergenic Intergenic 105811 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 2616 chr20 15277456 15278281 + 0 NA intron (NM_080676, intron 6 of 16) intron (NM_080676, intron 6 of 16) 100364 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133 MACRO domain containing 2 protein-coding 1408 chr14 60210716 60211484 + 0 NA intron (NM_021136, intron 2 of 8) intron (NM_021136, intron 2 of 8) -97362 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 2448 chr2 158591082 158591902 + 0 NA Intergenic L1ME3A|LINE|L1 103298 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 4224 chr8 8661649 8662625 + 0 NA intron (NM_004225, intron 1 of 2) Charlie13a|DNA|hAT-Charlie 88994 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1 malignant fibrous histiocytoma amplified sequence 1 protein-coding 2969 chr3 134621286 134622447 + 0 NA intron (NM_004441, intron 1 of 15) Charlie7|DNA|hAT-Charlie 107767 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 4249 chr8 21576661 21577381 + 0 NA intron (NM_001495, intron 4 of 8) intron (NM_001495, intron 4 of 8) 69325 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 4557 chr9 86125724 86126951 + 0 NA intron (NM_001244959, intron 1 of 14) intron (NM_001244959, intron 1 of 14) 27011 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 2721 chr21 35824775 35825663 + 0 NA intron (NM_001270404, intron 1 of 1) intron (NM_001270404, intron 1 of 1) 2888 NM_001127670 3753 Hs.121495 NM_000219 ENSG00000180509 KCNE1 ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK potassium voltage-gated channel subfamily E regulatory subunit 1 protein-coding 3595 chr6 20691152 20692837 + 0 NA intron (NM_017774, intron 5 of 15) Charlie7a|DNA|hAT-Charlie 157306 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 578 chr11 13141001 13142157 + 0 NA Intergenic Intergenic 110609 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 4418 chr8 128347248 128348089 + 0 NA intron (NR_117099, intron 2 of 3) MLT1E3|LTR|ERVL-MaLR -64976 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 (non-protein coding) ncRNA 4384 chr8 110683291 110684017 + 0 NA intron (NM_001099744, intron 1 of 7) intron (NM_001099744, intron 1 of 7) 9580 NM_001099746 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 695 chr11 77570111 77571284 + 0 NA intron (NM_001316960, intron 3 of 4) HERV17-int|LTR|ERV1 38537 NR_133637 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 3331 chr5 43412474 43413824 + 0 NA promoter-TSS (NM_148672) promoter-TSS (NM_148672) -656 NM_001301874 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 540 chr10 126826202 126827105 + 0 NA intron (NM_001290214, intron 1 of 10) intron (NM_001290214, intron 1 of 10) 21034 NM_001290215 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 1615 chr15 60864664 60865728 + 0 NA intron (NM_134260, intron 1 of 11) intron (NM_134260, intron 1 of 11) 19511 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 3137 chr4 68645091 68646067 + 0 NA Intergenic Intergenic -23775 NM_001012763 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 3065 chr3 193725084 193725975 + 0 NA intron (NR_136179, intron 2 of 2) MLT2A2|LTR|ERVL -4081 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 2073 chr19 7272764 7273848 + 0 NA intron (NM_001079817, intron 1 of 20) intron (NM_001079817, intron 1 of 20) 21007 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 1732 chr16 46414759 46416238 + 0 NA Intergenic HSATII|Satellite|Satellite 187511 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 861 chr12 13129104 13130283 + 0 NA intron (NM_015987, intron 3 of 3) L3b|LINE|CR1 -3078 NR_038920 100506314 Hs.659383 NR_038920 ENSG00000247498 LOC100506314 - uncharacterized LOC100506314 ncRNA 3706 chr6 80519462 80520766 + 0 NA intron (NR_131786, intron 2 of 4) intron (NR_131786, intron 2 of 4) 1849 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 337 chr1 202660857 202661566 + 0 NA intron (NM_177402, intron 1 of 8) intron (NM_177402, intron 1 of 8) 18340 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 2406 chr2 133339152 133341058 + 0 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 87838 NM_144586 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 3172 chr4 85643108 85644446 + 0 NA intron (NM_014991, intron 46 of 67) intron (NM_014991, intron 46 of 67) 139720 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS CDP-diacylglycerol synthase 1 protein-coding 76 chr1 36603106 36604133 + 0 NA intron (NM_001270897, intron 1 of 2) intron (NM_001270897, intron 1 of 2) 11496 NR_073098 27095 Hs.523131 NM_014408 ENSG00000054116 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 2718 chr21 33460950 33461807 + 0 NA Intergenic L2c|LINE|L2 -2770 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 982 chr12 97562727 97563665 + 0 NA Intergenic Intergenic 261952 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 571 chr11 12603009 12604134 + 0 NA Intergenic LTR16D|LTR|ERVL -92398 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1190 chr13 54815611 54816358 + 0 NA Intergenic Intergenic 70199 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 2592 chr20 5461400 5462528 + 0 NA Intergenic MER51E|LTR|ERV1 10122 NR_029405 643406 Hs.431161 NM_175877 LOC643406 - uncharacterized LOC643406 ncRNA 1171 chr13 47100301 47101833 + 0 NA Intergenic Intergenic -26229 NM_001164211 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 1345 chr14 36892979 36894459 + 0 NA Intergenic Intergenic 89271 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 2290 chr2 61934838 61936023 + 0 NA Intergenic Intergenic 145848 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161 member A protein-coding 4431 chr8 135506191 135507033 + 0 NA intron (NM_001174158, intron 13 of 13) intron (NM_001174158, intron 13 of 13) -103702 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 4153 chr7 133503905 133504935 + 0 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) 5221 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 1123 chr13 22623001 22624199 + 0 NA Intergenic Intergenic -160824 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 236 chr1 147080116 147080964 + 0 NA intron (NM_004326, intron 3 of 9) intron (NM_004326, intron 3 of 9) 62094 NM_016361 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 758 chr11 112209588 112210323 + 0 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 68483 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LOC283140 - uncharacterized LOC283140 ncRNA 706 chr11 79023390 79024264 + 0 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 89326 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 14 chr1 7426618 7427665 + 0 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) -404188 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 4550 chr9 84466093 84466923 + 0 NA Intergenic Intergenic -61844 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 2587 chr20 5138550 5139809 + 0 NA intron (NM_003818, intron 1 of 12) intron (NM_003818, intron 1 of 12) 31772 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 1608 chr15 58767527 58768427 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 22957 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 2328 chr2 89830379 89831187 + 0 NA Intergenic HSATII|Satellite|Satellite 718899 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 3232 chr4 140899208 140899908 + 0 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 175675 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind like transcriptional coactivator 3 protein-coding 2474 chr2 173684702 173685688 + 0 NA intron (NM_007023, intron 4 of 30) intron (NM_007023, intron 4 of 30) -1120 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 2889 chr3 104660463 104661720 + 0 NA Intergenic Intergenic -424466 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 3786 chr6 124159191 124160864 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 35036 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 234 chr1 147051174 147052449 + 0 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 38540 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 594 chr11 16918561 16919790 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 116788 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 2924 chr3 121966359 121967331 + 0 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 63664 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1 calcium sensing receptor protein-coding 1438 chr14 69601713 69602488 + 0 NA intron (NM_001284206, intron 1 of 8) Charlie1a|DNA|hAT-Charlie 17216 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 1903 chr17 71730984 71731628 + 0 NA Intergenic Intergenic -2687 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 4580 chr9 105748523 105749478 + 0 NA Intergenic L1PBb|LINE|L1 -8593 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 4302 chr8 61241025 61241821 + 0 NA Intergenic Intergenic -47441 NM_001321838 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 3554 chr5 177485096 177486312 + 0 NA Intergenic Intergenic 51737 NR_038353 653316 Hs.652193 NM_001079527 ENSG00000204677 FAM153C NY-REN-7-like family with sequence similarity 153, member C, pseudogene pseudo 3116 chr4 38470129 38471074 + 0 NA intron (NR_110951, intron 2 of 7) intron (NR_110951, intron 2 of 7) 54200 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 2776 chr22 28542216 28542972 + 0 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -225994 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 4443 chr8 140614085 140615663 + 0 NA intron (NR_104210, intron 3 of 3) intron (NR_104210, intron 3 of 3) 100425 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1000 chr12 99108466 99109346 + 0 NA intron (NM_001160, intron 20 of 25) intron (NM_001160, intron 20 of 25) 69828 NM_001160 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 43 chr1 18565989 18567141 + 0 NA intron (NM_032880, intron 2 of 9) AluJb|SINE|Alu 132325 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 2582 chr20 3400641 3401810 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR -12916 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 3502 chr5 153497788 153499117 + 0 NA Intergenic Intergenic -71843 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 1728 chr16 33973193 33976890 + 0 NA Intergenic ALR/Alpha|Satellite|centr -12538 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 3955 chr7 67590050 67590901 + 0 NA Intergenic LTR33B|LTR|ERVL 105235 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 3763 chr6 112182452 112183280 + 0 NA intron (NM_002037, intron 1 of 13) intron (NM_002037, intron 1 of 13) 11789 NM_002037 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 193 chr1 108662311 108663360 + 0 NA Intergenic Intergenic 72596 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1 solute carrier family 25 member 24 protein-coding 288 chr1 169153943 169154592 + 0 NA intron (NM_197972, intron 10 of 11) L2c|LINE|L2 78320 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 119 chr1 52431287 52432341 + 0 NA intron (NM_002867, intron 2 of 4) intron (NM_002867, intron 2 of 4) 24622 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 3925 chr7 39124886 39125921 + 0 NA intron (NM_001166018, intron 2 of 10) intron (NM_001166018, intron 2 of 10) -72236 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 3374 chr5 66673353 66674687 + 0 NA Intergenic Intergenic -181403 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 1180 chr13 51041007 51042167 + 0 NA intron (NR_109974, intron 4 of 6) intron (NR_109974, intron 4 of 6) 59998 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000229323 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 4730 chrX 150010600 150011427 + 0 NA intron (NM_134445, intron 1 of 7) intron (NM_134445, intron 1 of 7) 56276 NM_001184808 83692 Hs.522805 NM_031462 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule like 2 protein-coding 430 chr10 13605427 13606490 + 0 NA Intergenic AluJr|SINE|Alu -22981 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 3602 chr6 20892724 20893961 + 0 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 358654 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 447 chr10 35560380 35561377 + 0 NA intron (NM_181698, intron 3 of 11) L2|LINE|L2 24969 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 3258 chr4 173438405 173439132 + 0 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 171300 NR_125895 101928314 Hs.566023 NR_125894 LOC101928314 - uncharacterized LOC101928314 ncRNA 1446 chr14 71659552 71660855 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -204851 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 4438 chr8 136493305 136494610 + 0 NA intron (NM_006558, intron 1 of 8) L1M5|LINE|L1 24249 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 2118 chr2 1183182 1184274 + 0 NA intron (NM_018968, intron 8 of 16) L1MEe|LINE|L1 -233505 NM_001206744 7173 Hs.467554 NM_000547 ENSG00000115705 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 415 chr1 246323769 246325034 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 256313 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 4196 chr7 158405843 158406686 + 0 NA Intergenic L1MC5|LINE|L1 21956 NR_049893 100847032 NR_049893 ENSG00000265598 MIR5707 - microRNA 5707 ncRNA 3987 chr7 76310431 76311694 + 0 NA Intergenic Intergenic -54442 NM_012230 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 2597 chr20 8327049 8327700 + 0 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 98023 NR_046809 100874337 Hs.662218 NR_046809 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 1292 chr13 110451630 110452562 + 0 NA Intergenic Intergenic -13182 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 1356 chr14 38428495 38429528 + 0 NA Intergenic Charlie4z|DNA|hAT-Charlie -57682 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 438 chr10 23359447 23360335 + 0 NA Intergenic Intergenic -24536 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 1153 chr13 37306403 37307328 + 0 NA Intergenic Intergenic 58816 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 1871 chr17 50773476 50774259 + 0 NA Intergenic Intergenic -289013 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 4569 chr9 94197302 94198172 + 0 NA Intergenic LTR67B|LTR|ERVL -10829 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 1022 chr12 104245914 104247490 + 0 NA intron (NR_027249, intron 14 of 15) L2b|LINE|L2 -11727 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 4463 chr9 3886818 3887949 + 0 NA intron (NM_001042413, intron 7 of 10) intron (NM_001042413, intron 7 of 10) -11263 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 4395 chr8 121848357 121849950 + 0 NA Intergenic L2c|LINE|L2 -24844 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 2795 chr3 138931 139794 + 0 NA Intergenic Intergenic 73931 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 953 chr12 78307301 78308397 + 0 NA intron (NM_014903, intron 1 of 38) L3|LINE|CR1 82780 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 1560 chr14 100557593 100558739 + 0 NA intron (NM_001330221, intron 2 of 13) MER21A|LTR|ERVL 17685 NR_039601 100616247 NR_039601 ENSG00000265154 MIR151B - microRNA 151b ncRNA 3912 chr7 29957022 29958095 + 0 NA TTS (NM_001080529) TTS (NM_001080529) 71867 NM_001145515 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 784 chr11 116385883 116387532 + 0 NA Intergenic Intergenic -123432 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 1762 chr16 68301857 68302470 + 0 NA intron (NM_003983, intron 2 of 10) MER21B|LTR|ERVL 3744 NM_001076785 9057 Hs.679580 NM_003983 ENSG00000103064 SLC7A6 LAT-2|LAT3|y+LAT-2 solute carrier family 7 member 6 protein-coding 260 chr1 162936256 162936891 + 0 NA Intergenic L2a|LINE|L2 -97968 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 3080 chr4 8040169 8041638 + 0 NA intron (NM_001130083, intron 9 of 20) intron (NM_001130083, intron 9 of 20) 32840 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 2061 chr18 68490721 68491764 + 0 NA Intergenic L2b|LINE|L2 -173149 NM_001278515 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding) protein-coding 1844 chr17 37950452 37951775 + 0 NA intron (NM_001257409, intron 2 of 5) intron (NM_001257409, intron 2 of 5) -16635 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 762 chr11 113187681 113188908 + 0 NA intron (NM_001318533, intron 2 of 21) intron (NM_001318533, intron 2 of 21) 3043 NM_017868 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 1144 chr13 34753470 34754215 + 0 NA Intergenic Intergenic 361636 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 1723 chr16 27662237 27663181 + 0 NA intron (NM_015202, intron 6 of 27) intron (NM_015202, intron 6 of 27) 101241 NM_015202 23247 Hs.460459 NM_015202 ENSG00000047578 KIAA0556 JBTS26 KIAA0556 protein-coding 2047 chr18 61777725 61778535 + 0 NA intron (NR_033881, intron 1 of 9) intron (NR_033881, intron 1 of 9) 6805 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 144 chr1 73532272 73533808 + 0 NA Intergenic Intergenic -238813 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 4619 chr9 132900907 132902114 + 0 NA 3' UTR (NM_001136557, exon 20 of 20) 3' UTR (NM_001136557, exon 20 of 20) 4988 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 LOC401554 - uncharacterized LOC401554 ncRNA 3696 chr6 69397696 69398824 + 0 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 52628 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 906 chr12 41903426 41904215 + 0 NA intron (NM_013377, intron 3 of 7) intron (NM_013377, intron 3 of 7) 72279 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 2205 chr2 36739019 36739749 + 0 NA intron (NM_016441, intron 9 of 16) intron (NM_016441, intron 9 of 16) 85948 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 1349 chr14 36922678 36924448 + 0 NA Intergenic Intergenic 59427 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 177 chr1 90366055 90366971 + 0 NA intron (NM_018103, intron 2 of 2) intron (NM_018103, intron 2 of 2) 79033 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family member D protein-coding 2213 chr2 40098329 40099176 + 0 NA Intergenic Intergenic -46022 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 3346 chr5 51427960 51430709 + 0 NA Intergenic Intergenic -654440 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 2940 chr3 126606545 126607864 + 0 NA intron (NM_001320610, intron 5 of 7) intron (NM_001320610, intron 5 of 7) -100233 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 22 chr1 10597223 10597925 + 0 NA intron (NM_004565, intron 3 of 8) intron (NM_004565, intron 3 of 8) 62571 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 205 chr1 113579089 113580257 + 0 NA intron (NR_103777, intron 2 of 2) intron (NR_103777, intron 2 of 2) 36051 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LOC100996251 - uncharacterized LOC100996251 ncRNA 3072 chr4 2167753 2168511 + 0 NA intron (NM_181808, intron 13 of 25) intron (NM_181808, intron 13 of 25) 75759 NM_181808 353497 Hs.368454 NM_181808 ENSG00000130997 POLN POL4P DNA polymerase nu protein-coding 4345 chr8 93182964 93183939 + 0 NA Intergenic Intergenic -3712 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 3213 chr4 129437629 129438492 + 0 NA intron (NR_125882, intron 8 of 8) intron (NR_125882, intron 8 of 8) 88889 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 3296 chr5 7882872 7883558 + 0 NA intron (NR_134482, intron 4 of 13) intron (NR_134482, intron 4 of 13) 13998 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 2681 chr20 58727303 58728539 + 0 NA intron (NR_046099, intron 1 of 4) L1ME2|LINE|L1 14373 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 1260 chr13 102748598 102749470 + 0 NA intron (NM_001321945, intron 2 of 5) MIRb|SINE|MIR -50680 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 874 chr12 18688938 18689673 + 0 NA intron (NM_004570, intron 23 of 31) MIR|SINE|MIR 201138 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 493 chr10 86456002 86456946 + 0 NA Intergenic Intergenic 271536 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 1708 chr16 17345814 17346341 + 0 NA intron (NM_022166, intron 3 of 11) MIRb|SINE|MIR 117716 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 3719 chr6 92156517 92157375 + 0 NA Intergenic Intergenic -74432 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 2220 chr2 40470670 40471426 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 186396 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 1436 chr14 68487090 68488370 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 197421 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 2528 chr2 212973761 212974631 + 0 NA intron (NM_005235, intron 2 of 27) Plat_L3|LINE|CR1 316888 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 1591 chr15 45103615 45104855 + 0 NA Intergenic Intergenic 75675 NM_001301145 140691 Hs.745248 NM_080745 ENSG00000185880 TRIM69 HSD-34|HSD34|RNF36|Trif tripartite motif containing 69 protein-coding 1677 chr16 6076265 6077451 + 0 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 7154 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 2174 chr2 15597083 15598497 + 0 NA intron (NM_015909, intron 21 of 51) intron (NM_015909, intron 21 of 51) 103682 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 4699 chrX 105851088 105851883 + 0 NA Intergenic Intergenic -3675 NM_018015 55086 Hs.274267 NM_018015 ENSG00000147231 CXorf57 - chromosome X open reading frame 57 protein-coding 1320 chr14 26915422 26916230 + 0 NA 3' UTR (NM_002515, exon 5 of 5) 3' UTR (NM_002515, exon 5 of 5) 151134 NM_006491 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 1026 chr12 105458216 105459018 + 0 NA intron (NM_001034173, intron 6 of 22) L2c|LINE|L2 19724 NR_027752 160428 Hs.42572 NM_001034173 ENSG00000136010 ALDH1L2 mtFDH aldehyde dehydrogenase 1 family member L2 protein-coding 4493 chr9 14135190 14137065 + 0 NA intron (NM_001190737, intron 6 of 10) intron (NM_001190737, intron 6 of 10) 44674 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 2752 chr21 42629423 42630503 + 0 NA intron (NM_138991, intron 7 of 7) intron (NM_138991, intron 7 of 7) -58698 NM_058186 54097 Hs.473877 NM_058186 ENSG00000183844 FAM3B 2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44 family with sequence similarity 3 member B protein-coding 1390 chr14 54810104 54811087 + 0 NA Intergenic Intergenic -52991 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 1993 chr18 40255201 40256397 + 0 NA intron (NR_046174, intron 7 of 9) intron (NR_046174, intron 7 of 9) 439858 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 3544 chr5 174775375 174776609 + 0 NA Intergenic Intergenic 95171 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 1469 chr14 78794264 78796649 + 0 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -74618 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1499 chr14 80820986 80822225 + 0 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -124208 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 4674 chrX 18945368 18946166 + 0 NA intron (NM_000292, intron 13 of 32) MIRc|SINE|MIR 37353 NR_029379 100132163 Hs.607628 NR_029379 PHKA2-AS1 - PHKA2 antisense RNA 1 ncRNA 400 chr1 232107598 232108613 + 0 NA intron (NM_001012957, intron 10 of 12) intron (NM_001012957, intron 10 of 12) 46525 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 919 chr12 52467394 52468346 + 0 NA intron (NM_021934, intron 3 of 3) intron (NM_021934, intron 3 of 3) 4112 NM_021934 60673 Hs.9911 NM_021934 ENSG00000123395 ATG101 C12orf44 autophagy related 101 protein-coding 1268 chr13 103413234 103413975 + 0 NA Intergenic Intergenic -2182 NM_001146197 643677 Hs.368382 NM_001146197 ENSG00000175820 CCDC168 C13orf40 coiled-coil domain containing 168 protein-coding 633 chr11 26091848 26093397 + 0 NA Intergenic Intergenic -118048 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 1372 chr14 43556666 43557425 + 0 NA Intergenic Intergenic 1419454 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1977 chr18 35094611 35095681 + 0 NA intron (NM_001025087, intron 1 of 12) intron (NM_001025087, intron 1 of 12) -48679 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 2023 chr18 51773172 51774102 + 0 NA Intergenic Intergenic -22212 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding 4387 chr8 118895482 118896784 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 227925 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 3445 chr5 126376505 126377460 + 0 NA Intergenic Intergenic -10482 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 1669 chr16 4356208 4357296 + 0 NA Intergenic Intergenic -8010 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 1825 chr17 32164144 32164962 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -303774 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 1285 chr13 108283590 108284531 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -100464 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 3309 chr5 9854705 9856042 + 0 NA intron (NR_027112, intron 4 of 12) MER54B|LTR|ERVL 48563 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 3594 chr6 20674727 20675514 + 0 NA intron (NM_017774, intron 5 of 15) L1MC4a|LINE|L1 140432 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 3757 chr6 111886120 111886965 + 0 NA intron (NM_147200, intron 8 of 9) intron (NM_147200, intron 8 of 9) 2021 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 1549 chr14 97354480 97356732 + 0 NA Intergenic Intergenic -54310 NR_104113 145249 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 1959 chr18 26739841 26740823 + 0 NA Intergenic Intergenic -982922 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 1242 chr13 101076710 101078379 + 0 NA intron (NM_001127692, intron 18 of 22) intron (NM_001127692, intron 18 of 22) 55725 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 1208 chr13 89478746 89479828 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR 200180 NR_047490 100861553 Hs.560132 NR_047490 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 1874 chr17 54124503 54125192 + 0 NA Intergenic Intergenic -105989 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 1803 chr17 5532140 5532914 + 0 NA Intergenic Intergenic -44695 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 3542 chr5 174588625 174589615 + 0 NA Intergenic Intergenic -166386 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 1201 chr13 75055639 75056511 + 0 NA Intergenic Intergenic 62765 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 519 chr10 105747604 105748443 + 0 NA intron (NM_001304743, intron 1 of 17) MER34|LTR|ERV1 21080 NM_014720 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 3300 chr5 8057913 8059434 + 0 NA Intergenic Intergenic 189456 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 17 chr1 9357336 9358521 + 0 NA intron (NM_025106, intron 1 of 2) ERVL-B4-int|LTR|ERVL 4987 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 4092 chr7 117576810 117577719 + 0 NA Intergenic Intergenic -63703 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 2451 chr2 159985775 159986734 + 0 NA intron (NM_033394, intron 4 of 26) intron (NM_033394, intron 4 of 26) -57092 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 3337 chr5 49428089 49441445 + 0 NA Intergenic ALR/Alpha|Satellite|centr 302467 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1274 chr13 104209023 104209827 + 0 NA Intergenic Intergenic 131875 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 110 chr1 49249696 49250663 + 0 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -7538 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 2356 chr2 97967894 97968795 + 0 NA Intergenic AluJb|SINE|Alu 18672 NR_103733 100506076 Hs.732616 NR_103732 LOC100506076 - uncharacterized LOC100506076 ncRNA 4721 chrX 129984486 129985435 + 0 NA intron (NM_006375, intron 2 of 14) intron (NM_006375, intron 2 of 14) 48350 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 2210 chr2 37962292 37963221 + 0 NA Intergenic Intergenic -63078 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 3700 chr6 72138566 72139336 + 0 NA intron (NR_121615, intron 1 of 7) intron (NR_121615, intron 1 of 7) 8221 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 2658 chr20 46770950 46771511 + 0 NA Intergenic Intergenic -152369 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 646 chr11 35198558 35199762 + 0 NA intron (NM_001001392, intron 2 of 3) intron (NM_001001392, intron 2 of 3) 38743 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 4005 chr7 78794264 78795075 + 0 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 156365 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 1220 chr13 95066357 95068719 + 0 NA Intergenic Intergenic 64398 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 3663 chr6 41766847 41767602 + 0 NA intron (NM_018561, intron 6 of 6) intron (NM_018561, intron 6 of 6) 12043 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 2652 chr20 40565768 40566685 + 0 NA Intergenic Intergenic -319093 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 4263 chr8 28949494 28950439 + 0 NA intron (NM_015254, intron 37 of 39) intron (NM_015254, intron 37 of 39) 170644 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 2337 chr2 90377628 90378935 + 0 NA Intergenic HSATII|Satellite|Satellite 1266397 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 4626 chr9 134597340 134598108 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) -12495 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 2243 chr2 49262354 49263280 + 0 NA intron (NM_000145, intron 2 of 9) MIR3|SINE|MIR -23925 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 1087 chr12 119662692 119663716 + 0 NA Intergenic MIRc|SINE|MIR 46609 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 1288 chr13 108476865 108477664 + 0 NA intron (NR_046848, intron 1 of 1) intron (NR_046848, intron 1 of 1) 10542 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 810 chr11 122761451 122762516 + 0 NA intron (NM_024806, intron 2 of 8) intron (NM_024806, intron 2 of 8) 8747 NM_199124 79864 Hs.164705 NM_024806 ENSG00000109944 C11orf63 - chromosome 11 open reading frame 63 protein-coding 4351 chr8 94456987 94458043 + 0 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) 255146 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 4166 chr7 140878339 140879198 + 0 NA intron (NM_001195278, intron 1 of 3) Tigger15a|DNA|TcMar-Tigger 104736 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 33 chr1 15025670 15026855 + 0 NA intron (NM_201628, intron 1 of 14) MER63A|DNA|hAT-Blackjack 101049 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 1587 chr15 39042850 39043699 + 0 NA Intergenic Intergenic 54475 NM_207444 400359 Hs.448785 NM_207444 ENSG00000175779 C15orf53 - chromosome 15 open reading frame 53 protein-coding 4256 chr8 27725082 27725977 + 0 NA Intergenic Intergenic 18104 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 227 chr1 120823102 120823607 + 0 NA Intergenic Intergenic -15651 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72 member B protein-coding 1860 chr17 46574969 46576713 + 0 NA Intergenic Intergenic 32431 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 4577 chr9 100861857 100862755 + 0 NA exon (NM_033219, exon 3 of 7) exon (NM_033219, exon 3 of 7) 19329 NM_033219 9830 Hs.575631 NM_014788 ENSG00000106785 TRIM14 - tripartite motif containing 14 protein-coding 2013 chr18 47337409 47339003 + 0 NA intron (NM_006111, intron 1 of 9) intron (NM_006111, intron 1 of 9) 2045 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 264 chr1 163581007 163582015 + 0 NA Intergenic L2c|LINE|L2 -188530 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 806 chr11 122146600 122147481 + 0 NA intron (NR_137179, intron 2 of 4) intron (NR_137179, intron 2 of 4) 33155 NR_137193 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 4477 chr9 8744831 8745603 + 0 NA intron (NM_002839, intron 11 of 45) MIR3|SINE|MIR -11271 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type D protein-coding 1885 chr17 55739387 55740461 + 0 NA intron (NM_138962, intron 11 of 13) MIR|SINE|MIR -54151 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 2905 chr3 114175201 114176230 + 0 NA intron (NR_121661, intron 1 of 2) intron (NR_121661, intron 1 of 2) 3275 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 1817 chr17 31364171 31365017 + 0 NA intron (NM_183377, intron 3 of 9) intron (NM_183377, intron 3 of 9) 44725 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 2707 chr21 18623001 18623665 + 0 NA Intergenic Intergenic -187875 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 556 chr11 8311297 8312135 + 0 NA Intergenic Intergenic -21534 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 3998 chr7 77702705 77703746 + 0 NA intron (NM_001301128, intron 20 of 20) intron (NM_001301128, intron 20 of 20) 233778 NM_001127357 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 717 chr11 92418799 92420383 + 0 NA intron (NM_001008781, intron 2 of 24) MamRep434|DNA|TcMar-Tigger 229203 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 2817 chr3 29197503 29198325 + 0 NA Intergenic Intergenic 124516 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 671 chr11 51587975 51589635 + 0 NA Intergenic ALR/Alpha|Satellite|centr 73523 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 1511 chr14 82870104 82870967 + 0 NA Intergenic Intergenic -781130 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 2249 chr2 50016533 50018001 + 0 NA Intergenic Intergenic 184074 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 3353 chr5 51968765 51969782 + 0 NA Intergenic Intergenic -114501 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 2423 chr2 138096210 138097367 + 0 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 573656 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 1605 chr15 58581660 58582381 + 0 NA Intergenic Intergenic -142155 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 663 chr11 47941528 47942871 + 0 NA Intergenic Intergenic -59911 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type J protein-coding 4301 chr8 60986790 60987634 + 0 NA Intergenic Intergenic 206770 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 2431 chr2 146602585 146603692 + 0 NA Intergenic Intergenic -741487 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1945 chr18 13983522 13984788 + 0 NA Intergenic Intergenic -68449 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 4326 chr8 82022627 82023410 + 0 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 1285 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 969 chr12 92067084 92067960 + 0 NA Intergenic Intergenic 467967 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 4295 chr8 55126616 55127321 + 0 NA Intergenic Intergenic 79187 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 1946 chr18 13992033 13992698 + 0 NA Intergenic MIR|SINE|MIR -76659 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 2276 chr2 58706246 58707068 + 0 NA Intergenic Intergenic -41231 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 4207 chr8 3047966 3049117 + 0 NA intron (NM_033225, intron 33 of 69) L1MB1|LINE|L1 -462550 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 4089 chr7 117447423 117449540 + 0 NA intron (NM_033427, intron 3 of 22) LFSINE_Vert|SINE|SINE 65080 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 1501 chr14 81557281 81558884 + 0 NA intron (NM_001018036, intron 5 of 8) MIRc|SINE|MIR 111096 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 549 chr10 133171420 133172168 + 0 NA Intergenic Intergenic -61810 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 3465 chr5 138482536 138483387 + 0 NA intron (NM_022464, intron 1 of 9) intron (NM_022464, intron 1 of 9) 51104 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 3629 chr6 33833348 33834012 + 0 NA Intergenic Intergenic 31004 NR_038989 100507584 Hs.547104 NR_038989 ENSG00000249346 LINC01016 - long intergenic non-protein coding RNA 1016 ncRNA 3930 chr7 42932911 42933914 + 0 NA Intergenic L1PB1|LINE|L1 18277 NM_001099858 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 946 chr12 77226204 77226907 + 0 NA intron (NM_015336, intron 10 of 16) MER82|DNA|TcMar-Tigger 46265 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 2644 chr20 33378945 33380140 + 0 NA intron (NM_001318240, intron 3 of 15) intron (NM_001318240, intron 3 of 15) -9335 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 1361 chr14 41771966 41772628 + 0 NA Intergenic Intergenic -303762 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 3864 chr7 3303927 3304886 + 0 NA Intergenic Intergenic -36674 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 3155 chr4 77915193 77916095 + 0 NA intron (NM_001306147, intron 2 of 11) intron (NM_001306147, intron 2 of 11) 44777 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPT11 - septin 11 protein-coding 3773 chr6 118696347 118697842 + 0 NA Intergenic Intergenic -125442 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 3280 chr5 2675068 2676581 + 0 NA Intergenic Intergenic 75945 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 1465 chr14 78687917 78688789 + 0 NA intron (NM_001330195, intron 1 of 20) intron (NM_001330195, intron 1 of 20) 51637 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2990 chr3 140038234 140039265 + 0 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 188882 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 1397 chr14 58056902 58058548 + 0 NA intron (NM_001306087, intron 2 of 7) intron (NM_001306087, intron 2 of 7) -97144 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 C14orf105 - chromosome 14 open reading frame 105 protein-coding 3678 chr6 49706937 49707749 + 0 NA intron (NM_001190986, intron 1 of 7) intron (NM_001190986, intron 1 of 7) 4825 NM_001190986 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 941 chr12 69564191 69564906 + 0 NA Intergenic LTR26E|LTR|ERV1 -68769 NM_001300947 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 583 chr11 14988942 14989941 + 0 NA TTS (NM_001741) TTS (NM_001741) 4391 NR_125898 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 3436 chr5 123463332 123463973 + 0 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 310561 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 1869 chr17 50259059 50259747 + 0 NA Intergenic Intergenic -22026 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 3190 chr4 94931982 94932946 + 0 NA Intergenic Intergenic 182386 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 591 chr11 15782652 15783599 + 0 NA Intergenic L1MEe|LINE|L1 117694 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 2304 chr2 67509253 67510236 + 0 NA intron (NR_110564, intron 3 of 4) intron (NR_110564, intron 3 of 4) -67293 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 3846 chr6 158749186 158750074 + 0 NA intron (NM_001007466, intron 1 of 12) intron (NM_001007466, intron 1 of 12) 15938 NM_020245 56995 Hs.486993 NM_020245 ENSG00000130338 TULP4 TUSP tubby like protein 4 protein-coding 3481 chr5 146143544 146144499 + 0 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 114327 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 2804 chr3 5388924 5389695 + 0 NA Intergenic Intergenic -97369 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 2341 chr2 90386531 90393688 + 0 NA Intergenic HSATII|Satellite|Satellite 1278225 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 3583 chr6 18931106 18932011 + 0 NA Intergenic Intergenic 249153 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 4078 chr7 114299492 114300970 + 0 NA intron (NM_148898, intron 14 of 17) intron (NM_148898, intron 14 of 17) 6831 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 4149 chr7 133460713 133462059 + 0 NA intron (NM_021807, intron 10 of 17) MER121|DNA|TcMar? 48255 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 102 chr1 47924410 47925418 + 0 NA Intergenic Intergenic -21925 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 1920 chr18 930095 930899 + 0 NA Intergenic Intergenic 25300 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 3827 chr6 150684467 150685498 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -5046 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 4589 chr9 112245654 112246534 + 0 NA intron (NM_001145368, intron 1 of 24) intron (NM_001145368, intron 1 of 24) 14499 NM_002829 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 2992 chr3 140150979 140151919 + 0 NA intron (NM_022131, intron 5 of 16) intron (NM_022131, intron 5 of 16) 76182 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 2639 chr20 29831714 29832526 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -13347 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 4227 chr8 9021601 9022579 + 0 NA Intergenic Intergenic -12938 NM_001201329 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 3483 chr5 147130495 147131695 + 0 NA intron (NM_001270941, intron 1 of 21) intron (NM_001270941, intron 1 of 21) 31316 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 1218 chr13 94964745 94965930 + 0 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -125092 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 4409 chr8 125699363 125700246 + 0 NA intron (NM_014751, intron 3 of 13) intron (NM_014751, intron 3 of 13) 40944 NM_001282971 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS1, I-BAR domain containing protein-coding 2398 chr2 129761764 129762489 + 0 NA Intergenic Intergenic 139952 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 259 chr1 162677896 162678766 + 0 NA intron (NM_001014796, intron 3 of 18) intron (NM_001014796, intron 3 of 18) 76103 NM_001014796 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10 discoidin domain receptor tyrosine kinase 2 protein-coding 1625 chr15 63865115 63865864 + 0 NA intron (NR_046342, intron 10 of 15) MIR|SINE|MIR -24063 NM_203373 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 163 chr1 86906555 86907474 + 0 NA intron (NM_006536, intron 8 of 13) intron (NM_006536, intron 8 of 13) 17448 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 4070 chr7 111172556 111173486 + 0 NA intron (NM_001244606, intron 2 of 6) intron (NM_001244606, intron 2 of 6) 29326 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 3898 chr7 26530069 26531605 + 0 NA intron (NR_015364, intron 1 of 4) intron (NR_015364, intron 1 of 4) 47607 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 1106 chr12 129536022 129536856 + 0 NA Intergenic Intergenic -57796 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 1836 chr17 32960203 32960939 + 0 NA intron (NM_001304438, intron 6 of 8) intron (NM_001304438, intron 6 of 8) 52803 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 1531 chr14 89792604 89793635 + 0 NA intron (NM_001085471, intron 3 of 6) intron (NM_001085471, intron 3 of 6) 90335 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 2731 chr21 37051719 37052623 + 0 NA Intergenic L3|LINE|CR1 -40842 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 3976 chr7 69302113 69303207 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 238755 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 2929 chr3 123329044 123329753 + 0 NA intron (NR_121654, intron 2 of 3) MLT1I|LTR|ERVL-MaLR 10056 NM_053031 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 2738 chr21 40560497 40561301 + 0 NA 3' UTR (NM_033656, exon 41 of 41) 3' UTR (NM_033656, exon 41 of 41) -5459 NM_001261824 8624 Hs.473838 NM_003720 ENSG00000183527 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome assembly chaperone 1 protein-coding 1333 chr14 31243988 31244985 + 0 NA Intergenic L1MB3|LINE|L1 -99255 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9 cochlin protein-coding 2770 chr22 18883602 18884478 + 0 NA Intergenic HSATI|Satellite|Satellite -2096 NR_136571 100996432 Hs.631668 NR_136571 LINC01663 - long intergenic non-protein coding RNA 1663 ncRNA 3859 chr6 169135111 169136031 + 0 NA Intergenic Intergenic 228906 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 3087 chr4 13090583 13091891 + 0 NA Intergenic Intergenic 394752 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 442 chr10 29057816 29058545 + 0 NA intron (NR_120652, intron 2 of 3) intron (NR_120652, intron 2 of 3) 25601 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 4044 chr7 104122219 104123456 + 0 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 153733 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 lipoma HMGIC fusion partner-like 3 protein-coding 4492 chr9 14061508 14064224 + 0 NA Intergenic Intergenic 117935 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 2156 chr2 8341538 8342803 + 0 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) 126379 NR_034135 339789 Hs.565619 NM_207358 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 1577 chr15 31730750 31731465 + 0 NA Intergenic Intergenic 112049 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1572 chr15 28226282 28227348 + 0 NA intron (NM_001300984, intron 13 of 22) L1MEc|LINE|L1 117643 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 2851 chr3 58730845 58731490 + 0 NA intron (NM_198463, intron 15 of 15) MIRb|SINE|MIR -78606 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 886 chr12 28736454 28737509 + 0 NA Intergenic Intergenic 393621 NM_001330367 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 4733 chrX 152617098 152618278 + 0 NA 3' UTR (NM_001080485, exon 5 of 5) 3' UTR (NM_001080485, exon 5 of 5) 201 NR_135656 105373378 Hs.719349 NR_135656 ENSG00000063587 LOC105373378 - uncharacterized LOC105373378 ncRNA 2835 chr3 42311745 42312651 + 0 NA Intergenic LTR16E1|LTR|ERVL -4511 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 1329 chr14 30315248 30316347 + 0 NA intron (NM_001330069, intron 1 of 18) L2a|LINE|L2 81102 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 3728 chr6 97058512 97059481 + 0 NA intron (NM_001170807, intron 5 of 5) intron (NM_001170807, intron 5 of 5) 47995 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 4186 chr7 155641641 155642619 + 0 NA Intergenic Intergenic -37163 NM_000193 6469 Hs.164537 NM_000193 ENSG00000164690 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 3568 chr6 13412764 13413827 + 0 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) -4926 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 3243 chr4 152642755 152643429 + 0 NA intron (NM_004564, intron 2 of 12) Tigger14a|DNA|TcMar-Tigger 39083 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 3777 chr6 118981090 118982318 + 0 NA intron (NM_001178035, intron 1 of 13) intron (NM_001178035, intron 1 of 13) -8684 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 320 chr1 183093010 183093984 + 0 NA intron (NM_002293, intron 13 of 27) MIRc|SINE|MIR -61677 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 3528 chr5 158416139 158417410 + 0 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 109996 NM_001324101 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 3756 chr6 111861890 111862809 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 26214 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 811 chr11 122765692 122767673 + 0 NA intron (NM_024806, intron 2 of 8) intron (NM_024806, intron 2 of 8) 13446 NM_199124 79864 Hs.164705 NM_024806 ENSG00000109944 C11orf63 - chromosome 11 open reading frame 63 protein-coding 465 chr10 70355782 70356992 + 0 NA intron (NM_030625, intron 2 of 11) intron (NM_030625, intron 2 of 11) 36270 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 249 chr1 154995328 154996166 + 0 NA intron (NM_144622, intron 13 of 14) intron (NM_144622, intron 13 of 14) 10510 NM_144622 127579 Hs.591491 NM_144622 ENSG00000163354 DCST2 - DC-STAMP domain containing 2 protein-coding 1612 chr15 60830492 60831362 + 0 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 53780 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 819 chr11 126699930 126701009 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -110173 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 1177 chr13 49879020 49879721 + 0 NA Intergenic MER65A|LTR|ERV1 57323 NM_030911 81602 Hs.388220 NM_030911 ENSG00000102543 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 1189 chr13 54806602 54807530 + 0 NA Intergenic Intergenic 79117 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 3680 chr6 51128083 51128957 + 0 NA Intergenic Intergenic 342081 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 1748 chr16 53125471 53126441 + 0 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 37011 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 2127 chr2 2309581 2310600 + 0 NA intron (NM_001329851, intron 1 of 23) intron (NM_001329851, intron 1 of 23) -12914 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 858 chr12 12007806 12009736 + 0 NA intron (NM_001987, intron 4 of 7) intron (NM_001987, intron 4 of 7) 205983 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 3768 chr6 118337831 118339485 + 0 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) -68408 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 385 chr1 220427336 220428551 + 0 NA intron (NM_012414, intron 1 of 34) intron (NM_012414, intron 1 of 34) 13114 NR_001587 6791 Hs.654849 NR_001587 AURKAPS1 AurAps1|STK6P aurora kinase A pseudogene 1 pseudo 1359 chr14 40459925 40460977 + 0 NA Intergenic Intergenic -558747 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 1479 chr14 79187878 79189020 + 0 NA intron (NM_001330195, intron 8 of 20) intron (NM_001330195, intron 8 of 20) 318375 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2578 chr20 1407661 1408944 + 0 NA Intergenic L1MD2|LINE|L1 -34486 NM_000801 2280 Hs.471933 NM_000801 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FK506 binding protein 1A protein-coding 971 chr12 92627559 92628468 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 88152 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 4716 chrX 119329472 119330284 + 0 NA Intergenic MER76-int|LTR|ERVL 37411 NM_001099685 727940 Hs.196956 NM_001099685 ENSG00000203989 RHOXF2B - Rhox homeobox family member 2B protein-coding 479 chr10 78222178 78222994 + 0 NA intron (NR_131178, intron 7 of 7) Eulor11|DNA|DNA -425216 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 847 chr12 5485592 5486636 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -55166 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 1166 chr13 44560278 44561141 + 0 NA Intergenic Intergenic -35762 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 3091 chr4 17668633 17669893 + 0 NA intron (NM_015688, intron 7 of 17) intron (NM_015688, intron 7 of 17) 53012 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 2166 chr2 12470380 12471292 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 131580 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 1378 chr14 46279117 46280838 + 0 NA Intergenic Intergenic -253385 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1054 chr12 110967950 110970377 + 0 NA 3' UTR (NM_001286531, exon 11 of 11) 3' UTR (NM_001286531, exon 11 of 11) 29015 NM_001286534 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 2821 chr3 32651612 32652197 + 0 NA Intergenic L2c|LINE|L2 -39488 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 2101 chr19 45779371 45780172 + 0 NA intron (NM_031417, intron 8 of 17) intron (NM_031417, intron 8 of 17) 25255 NM_031417 57787 Hs.34314 NM_031417 ENSG00000007047 MARK4 MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D microtubule affinity regulating kinase 4 protein-coding 619 chr11 22429266 22429875 + 0 NA Intergenic Intergenic 69903 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 3797 chr6 124920470 124921548 + 0 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 316858 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 3616 chr6 23999030 24000805 + 0 NA Intergenic Intergenic -126497 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 621 chr11 22508799 22509633 + 0 NA intron (NR_120583, intron 1 of 3) MLT1B|LTR|ERVL-MaLR 4349 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 2310 chr2 69451076 69452160 + 0 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 120804 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 2495 chr2 179782084 179782914 + 0 NA intron (NM_173648, intron 7 of 23) intron (NM_173648, intron 7 of 23) -110349 NM_001267550 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD titin protein-coding 3395 chr5 78506352 78507124 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -25187 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 3052 chr3 184223131 184223740 + 0 NA Intergenic Intergenic 51271 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 2322 chr2 79695391 79696149 + 0 NA Intergenic L1PA5|LINE|L1 32200 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 2438 chr2 149658525 149660231 + 0 NA intron (NM_004522, intron 1 of 25) intron (NM_004522, intron 1 of 25) 26586 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 3334 chr5 49415473 49419471 + 0 NA Intergenic ALR/Alpha|Satellite|centr 319762 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 3246 chr4 153942854 153944021 + 0 NA Intergenic MamRep38|DNA|hAT 79302 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 4179 chr7 147754870 147756372 + 0 NA intron (NM_014141, intron 15 of 23) intron (NM_014141, intron 15 of 23) 128936 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 377 chr1 210056277 210058778 + 0 NA Intergenic Intergenic -53992 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 2050 chr18 63154297 63155267 + 0 NA Intergenic Intergenic -262706 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 602 chr11 19674258 19675032 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -60236 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 3815 chr6 138805931 138806605 + 0 NA intron (NM_001144060, intron 2 of 7) intron (NM_001144060, intron 2 of 7) 14311 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 1311 chr14 19000962 19001866 + 0 NA Intergenic ALR/Alpha|Satellite|centr -376180 NM_001013354 440153 Hs.534880 NM_001013354 ENSG00000257115 OR11H12 - olfactory receptor family 11 subfamily H member 12 protein-coding 1787 chr16 79010722 79011577 + 0 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 623473 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 612 chr11 20975859 20977028 + 0 NA intron (NM_201551, intron 11 of 18) intron (NM_201551, intron 11 of 18) 285346 NM_001288714 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 936 chr12 68435447 68436399 + 0 NA Intergenic Intergenic 52698 NR_104124 100885789 Hs.439832 NR_104124 ENSG00000255733 IFNG-AS1 GS1-410F4.2|NEST|Tmevpg1 IFNG antisense RNA 1 ncRNA 1391 chr14 55560826 55561973 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -34536 NM_001177388 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 3579 chr6 15518978 15520161 + 0 NA intron (NM_004973, intron 17 of 17) intron (NM_004973, intron 17 of 17) 143720 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 4510 chr9 28092659 28094136 + 0 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -519533 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENNL72|FTDALS|FTDALS1 chromosome 9 open reading frame 72 protein-coding 2794 chr22 48819020 48819805 + 0 NA Intergenic Intergenic -65860 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 FAM19A5 QLLK5208|TAFA-5|TAFA5|UNQ5208 family with sequence similarity 19 member A5, C-C motif chemokine like protein-coding 701 chr11 78420340 78421138 + 0 NA intron (NM_001098816, intron 26 of 33) MER5A1|DNA|hAT-Charlie -134830 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 3710 chr6 82399126 82400224 + 0 NA Intergenic LTR67B|LTR|ERVL 62753 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 FAM46A C6orf37|XTP11 family with sequence similarity 46 member A protein-coding 214 chr1 116216458 116217444 + 0 NA intron (NM_138959, intron 4 of 7) L2c|LINE|L2 31701 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 3630 chr6 33846101 33847086 + 0 NA Intergenic Intergenic 18091 NR_038989 100507584 Hs.547104 NR_038989 ENSG00000249346 LINC01016 - long intergenic non-protein coding RNA 1016 ncRNA 2708 chr21 18712220 18713001 + 0 NA Intergenic HERVL-int|LTR|ERVL -98598 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 2789 chr22 42795413 42796337 + 0 NA intron (NM_001318323, intron 2 of 4) intron (NM_001318323, intron 2 of 4) -30661 NR_120596 102723775 Hs.335413 NR_120595 ENSG00000229891 LINC01315 lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 1650 chr15 82252156 82252913 + 0 NA Intergenic L2b|LINE|L2 85950 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 2074 chr19 8271012 8271985 + 0 NA Intergenic AluJo|SINE|Alu -2719 NM_024552 79603 Hs.515111 NM_024552 ENSG00000090661 CERS4 LASS4|Trh1 ceramide synthase 4 protein-coding 2539 chr2 218719269 218720810 + 0 NA intron (NM_001308023, intron 15 of 29) L2c|LINE|L2 45312 NR_106867 102465485 NR_106867 ENSG00000275458 MIR6809 hsa-mir-6809 microRNA 6809 ncRNA 2547 chr2 224179061 224179931 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 262848 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 731 chr11 93101899 93102747 + 0 NA intron (NM_181645, intron 5 of 13) MLT1A0|LTR|ERVL-MaLR 38440 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 3639 chr6 36966726 36967685 + 0 NA Intergenic Intergenic -6218 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 2779 chr22 29390181 29390987 + 0 NA intron (NM_032173, intron 2 of 8) L1MB3|LINE|L1 36880 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 4281 chr8 38531517 38532264 + 0 NA Intergenic Intergenic -53814 NM_001330521 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 2139 chr2 4951082 4952273 + 0 NA Intergenic Intergenic -247865 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 768 chr11 114949406 114950162 + 0 NA Intergenic Intergenic -254512 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 1928 chr18 3759198 3760489 + 0 NA intron (NM_001003809, intron 2 of 9) L2c|LINE|L2 85515 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1092 chr12 119816768 119817414 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 44574 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 3877 chr7 18027731 18028365 + 0 NA Intergenic Intergenic 39438 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1-like 1 protein-coding 2255 chr2 50353719 50354565 + 0 NA intron (NM_001135659, intron 19 of 23) intron (NM_001135659, intron 19 of 23) -152801 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1756 chr16 57431484 57432299 + 0 NA Intergenic HERV9-int|LTR|ERV1 -6788 NM_002987 6361 Hs.546294 NM_002987 ENSG00000102970 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC C-C motif chemokine ligand 17 protein-coding 1636 chr15 70417782 70418557 + 0 NA Intergenic Intergenic -27913 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 2491 chr2 179192079 179193132 + 0 NA intron (NM_001201481, intron 4 of 23) intron (NM_001201481, intron 4 of 23) 7634 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 338 chr1 202686988 202687911 + 0 NA Intergenic Intergenic -7898 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 3105 chr4 25066791 25067675 + 0 NA Intergenic Intergenic -34819 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 576 chr11 13064511 13066116 + 0 NA Intergenic Intergenic 34343 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 761 chr11 112608859 112609773 + 0 NA Intergenic L2a|LINE|L2 -182791 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LOC387810 - uncharacterized LOC387810 ncRNA 4748 chrY 58996179 58997672 + 0 NA Intergenic BSR/Beta|Satellite|Satellite -103478 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 738 chr11 97917073 97918444 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -973948 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1775 chr16 72918216 72919068 + 0 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) 163632 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 1415 chr14 61677932 61679347 + 0 NA Intergenic Intergenic 69891 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 484 chr10 79141215 79142181 + 0 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 31068 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 3408 chr5 96397562 96398511 + 0 NA Intergenic Intergenic 80484 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 2334 chr2 89873749 89880141 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 765061 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 1078 chr12 116156573 116158188 + 0 NA Intergenic Intergenic 429079 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 1243 chr13 101135694 101136784 + 0 NA intron (NM_001178004, intron 21 of 22) intron (NM_001178004, intron 21 of 22) -2970 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 2530 chr2 213042130 213043181 + 0 NA intron (NM_005235, intron 1 of 27) L2b|LINE|L2 248429 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 623 chr11 22774119 22775374 + 0 NA intron (NM_001143830, intron 6 of 7) intron (NM_001143830, intron 6 of 7) 76179 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 4091 chr7 117474654 117475921 + 0 NA intron (NM_033427, intron 2 of 22) intron (NM_033427, intron 2 of 22) 38274 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 3885 chr7 23963003 23963744 + 0 NA Intergenic Intergenic 213428 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 1512 chr14 82955369 82956090 + 0 NA Intergenic L2b|LINE|L2 -866324 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 2956 chr3 131514044 131515166 + 0 NA intron (NM_130808, intron 2 of 15) MER72|LTR|ERV1 190170 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 4502 chr9 20735364 20736076 + 0 NA intron (NM_017794, intron 6 of 45) AluJr4|SINE|Alu 19616 NR_030166 574444 NR_030166 ENSG00000207609 MIR491 MIRN491|hsa-mir-491|mir-491 microRNA 491 ncRNA 2946 chr3 129838436 129839349 + 0 NA Intergenic Intergenic -8616 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 2564 chr2 235735162 235736725 + 0 NA Intergenic Intergenic -124685 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 2382 chr2 109815494 109816456 + 0 NA intron (NM_001099289, intron 1 of 9) (GAATG)n|Satellite|Satellite -57931 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 328 chr1 187845804 187847417 + 0 NA Intergenic Intergenic 433850 NR_132374 106144535 Hs.568709 NR_132374 ENSG00000231599 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 4462 chr9 3793758 3794462 + 0 NA Intergenic Intergenic -104536 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 628 chr11 24178548 24179470 + 0 NA Intergenic L1PA16|LINE|L1 -339507 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1223 chr13 95167410 95168242 + 0 NA intron (NM_001322186, intron 1 of 9) LTR33B|LTR|ERVL 33841 NM_001322184 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 4014 chr7 82364898 82365878 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL -292266 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 3538 chr5 167852862 167853712 + 0 NA intron (NM_015238, intron 11 of 22) intron (NM_015238, intron 11 of 22) -60176 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 4271 chr8 31969778 31970722 + 0 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 86516 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 733 chr11 94406542 94408902 + 0 NA intron (NR_135096, intron 4 of 6) intron (NR_135096, intron 4 of 6) 65799 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 3745 chr6 107973655 107974986 + 0 NA intron (NM_018013, intron 6 of 6) intron (NM_018013, intron 6 of 6) 79280 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 sex comb on midleg-like 4 (Drosophila) protein-coding 630 chr11 25886836 25887660 + 0 NA Intergenic Intergenic -323422 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 997 chr12 98980422 98981563 + 0 NA Intergenic MLT2F|LTR|ERVL -6411 NM_002635 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 3394 chr5 78203881 78204960 + 0 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 77346 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 608 chr11 20532110 20533449 + 0 NA Intergenic Intergenic -88167 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 3263 chr4 182339526 182340246 + 0 NA Intergenic Intergenic -259584 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 1234 chr13 99490995 99491762 + 0 NA intron (NM_015296, intron 38 of 55) intron (NM_015296, intron 38 of 55) 7040 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 1649 chr15 82179838 82180548 + 0 NA Intergenic Intergenic 158291 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 2226 chr2 40762964 40763885 + 0 NA Intergenic Intergenic -23849 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 2878 chr3 97591493 97592296 + 0 NA exon (NM_153605, exon 4 of 22) exon (NM_153605, exon 4 of 22) 51010 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 4108 chr7 126827850 126829686 + 0 NA intron (NM_001127323, intron 2 of 10) intron (NM_001127323, intron 2 of 10) -26413 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 4535 chr9 72611589 72613108 + 0 NA Intergenic Intergenic -46149 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 1474 chr14 79092163 79092857 + 0 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 222436 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 125 chr1 58143609 58144386 + 0 NA intron (NM_021080, intron 2 of 16) intron (NM_021080, intron 2 of 16) -182218 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 44 chr1 18568243 18569821 + 0 NA intron (NM_032880, intron 2 of 9) MamRep434|DNA|TcMar-Tigger 134792 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 2152 chr2 7648188 7648784 + 0 NA Intergenic Intergenic 87094 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 1687 chr16 7432360 7433030 + 0 NA intron (NM_145892, intron 1 of 12) intron (NM_145892, intron 1 of 12) 49944 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 1188 chr13 53815857 53816545 + 0 NA Intergenic Intergenic -90166 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 3142 chr4 72859087 72860231 + 0 NA Intergenic MER65-int|LTR|ERV1 -37862 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 2008 chr18 45131189 45132097 + 0 NA Intergenic Intergenic 224776 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 2862 chr3 64841034 64842521 + 0 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -168412 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 714 chr11 91870930 91871709 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -213943 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1564 chr14 106735434 106736388 + 0 NA Intergenic MER49|LTR|ERV1 -8358 NR_033375 338004 Hs.569411 NR_033375 LINC00226 C14orf97|NCRNA00226 long intergenic non-protein coding RNA 226 ncRNA 4364 chr8 101463947 101464878 + 0 NA Intergenic Intergenic 69421 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 2663 chr20 47659059 47660168 + 0 NA intron (NR_110625, intron 1 of 1) intron (NR_110625, intron 1 of 1) 2980 NR_110624 102723483 Hs.209000 NR_110624 ENSG00000227431 CSE1L-AS1 - CSE1L antisense RNA 1 ncRNA 4690 chrX 61732160 61734299 + 0 NA Intergenic ALR/Alpha|Satellite|centr 837989 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 4631 chr9_gl000199_random 33590 36268 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 397 chr1 230427815 230429089 + 0 NA Intergenic (TTTTTG)n|Simple_repeat|Simple_repeat 133222 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 1096 chr12 122595175 122596591 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) -56383 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 3285 chr5 5978889 5979547 + 0 NA Intergenic Intergenic 358187 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 2934 chr3 124874854 124875745 + 0 NA intron (NM_024628, intron 5 of 13) intron (NM_024628, intron 5 of 13) -4903 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 1657 chr15 89659709 89660477 + 0 NA intron (NM_152924, intron 3 of 10) intron (NM_152924, intron 3 of 10) 28712 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 3009 chr3 158687556 158688486 + 0 NA Intergenic Intergenic -99020 NM_001042705 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 4432 chr8 135559697 135561232 + 0 NA intron (NM_001029939, intron 12 of 16) L2a|LINE|L2 -49850 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 2185 chr2 26763720 26765102 + 0 NA intron (NM_001287489, intron 1 of 45) MamRep434|DNA|TcMar-Tigger 17155 NM_194248 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 2717 chr21 33309257 33310111 + 0 NA intron (NM_014586, intron 2 of 10) Kanga2_a|DNA|TcMar-Tc2 64056 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 1191 chr13 55792379 55793105 + 0 NA Intergenic L1MDa|LINE|L1 44153 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 823 chr11 126853870 126855380 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) 3813 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 4659 chrX 8646534 8648188 + 0 NA intron (NM_000216, intron 2 of 13) L1MB3|LINE|L1 52867 NM_000216 3730 Hs.521869 NM_000216 ENSG00000011201 ANOS1 ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19 anosmin 1 protein-coding 4666 chrX 11481415 11482159 + 0 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) -35882 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 771 chr11 115161296 115162217 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -42540 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 401 chr1 232149978 232151247 + 0 NA intron (NM_001164537, intron 12 of 13) Tigger13a|DNA|TcMar-Tigger 89032 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 186 chr1 96943562 96944665 + 0 NA Intergenic Intergenic -104432 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 1797 chr17 818475 819806 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 6268 NR_135633 101927727 Hs.666198 NR_135633 ENSG00000262003 LOC101927727 - uncharacterized LOC101927727 ncRNA 1119 chr13 22213464 22214294 + 0 NA Intergenic Intergenic -31336 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 1914 chr17 76680002 76680693 + 0 NA intron (NM_004762, intron 10 of 12) intron (NM_004762, intron 10 of 12) 32767 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 3039 chr3 176500034 176501498 + 0 NA Intergenic Intergenic 34023 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 1705 chr16 16001115 16002362 + 0 NA Intergenic L2b|LINE|L2 -19232 NR_130755 123811 Hs.514179 NM_144600 ENSG00000133393 FOPNL C16orf63|FOR20|PHSECRG2 FGFR1OP N-terminal like protein-coding 3000 chr3 150996831 150998113 + 0 NA intron (NM_053002, intron 14 of 42) intron (NM_053002, intron 14 of 42) -1242 NM_014879 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 915 chr12 49621433 49622848 + 0 NA intron (NM_001303114, intron 1 of 3) intron (NM_001303114, intron 1 of 3) 431 NM_001303114 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 2978 chr3 135066789 135067966 + 0 NA Intergenic Intergenic 553278 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1586 chr15 37426980 37428048 + 0 NA Intergenic Intergenic -34014 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 4037 chr7 95687844 95688975 + 0 NA intron (NM_001278422, intron 13 of 15) MER82|DNA|TcMar-Tigger 160659 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 1986 chr18 36901397 36902750 + 0 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 300066 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 1456 chr14 77586851 77588539 + 0 NA Intergenic Intergenic 20439 NM_174976 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 2606 chr20 10725084 10726086 + 0 NA Intergenic L3|LINE|CR1 -8153 NR_110611 101929395 Hs.244862 NR_110611 ENSG00000224961 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 2060 chr18 67512798 67514157 + 0 NA 3' UTR (NM_152721, exon 8 of 8) 3' UTR (NM_152721, exon 8 of 8) 101612 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 3561 chr6 4932738 4933615 + 0 NA intron (NM_001143970, intron 2 of 6) intron (NM_001143970, intron 2 of 6) 42950 NM_001143971 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y-like protein-coding 1551 chr14 98483159 98484116 + 0 NA Intergenic Intergenic -39176 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 3981 chr7 69896641 69898209 + 0 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -700098 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 4607 chr9 126323060 126323973 + 0 NA intron (NM_024820, intron 12 of 20) intron (NM_024820, intron 12 of 20) -75615 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 2904 chr3 114127752 114128626 + 0 NA intron (NM_001164343, intron 8 of 11) UCON23|DNA?|DNA? -25700 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 3643 chr6 38151967 38153139 + 0 NA intron (NM_001099272, intron 10 of 10) intron (NM_001099272, intron 10 of 10) -296819 NR_144472 101929425 Hs.665280 NR_144472 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 2346 chr2 92284019 92284925 + 0 NA Intergenic ALR/Alpha|Satellite|centr 155313 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 2195 chr2 29818981 29820184 + 0 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -121339 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 561 chr11 10472801 10473625 + 0 NA intron (NM_000480, intron 1 of 14) intron (NM_000480, intron 1 of 14) 989 NM_000480 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 2112 chr2 869569 870696 + 0 NA Intergenic Intergenic -6020 NR_111963 339822 Hs.651879 NR_033880 ENSG00000237667 LINC01115 - long intergenic non-protein coding RNA 1115 ncRNA 2555 chr2 229947909 229949211 + 0 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 148248 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 2221 chr2 40478109 40479000 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 178890 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 3718 chr6 92155094 92155978 + 0 NA Intergenic Intergenic -75842 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 2982 chr3 136941158 136942497 + 0 NA Intergenic Intergenic 265120 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 1307 chr13 113227628 113229396 + 0 NA intron (NM_001286278, intron 1 of 20) intron (NM_001286278, intron 1 of 20) 13987 NM_006322 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 1812 chr17 27969044 27970855 + 0 NA intron (NM_001282129, intron 14 of 15) intron (NM_001282129, intron 14 of 15) -21508 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 1769 chr16 68520715 68521611 + 0 NA Intergenic Intergenic -38754 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 2475 chr2 173699608 173700249 + 0 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 13613 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 1875 chr17 54249735 54250600 + 0 NA intron (NM_153228, intron 1 of 16) intron (NM_153228, intron 1 of 16) 19331 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 3834 chr6 156280871 156282690 + 0 NA Intergenic L3|LINE|CR1 13849 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 1673 chr16 5689500 5690177 + 0 NA Intergenic Intergenic 7370 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 4084 chr7 116687091 116688116 + 0 NA intron (NM_018412, intron 1 of 14) intron (NM_018412, intron 1 of 14) 27338 NR_106748 102466616 NR_106748 ENSG00000004866 MIR6132 hsa-mir-6132 microRNA 6132 ncRNA 4027 chr7 90871362 90873865 + 0 NA Intergenic Intergenic -21170 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 297 chr1 176732332 176733508 + 0 NA intron (NM_020318, intron 14 of 22) intron (NM_020318, intron 14 of 22) 265661 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 963 chr12 79668062 79668932 + 0 NA intron (NM_001291901, intron 3 of 9) L1PBa|LINE|L1 -144540 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 2031 chr18 55523269 55524369 + 0 NA Intergenic Intergenic -53492 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 980 chr12 97403469 97404857 + 0 NA Intergenic Intergenic 102919 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 1596 chr15 48382241 48383488 + 0 NA Intergenic Intergenic -30305 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 2697 chr21 10835454 10836255 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 155089 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 2097 chr19 42255762 42257072 + 0 NA Intergenic Intergenic -3011 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 1651 chr15 82314284 82314900 + 0 NA Intergenic Intergenic 23892 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 1569 chr15 27516275 27517427 + 0 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) -110385 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 2542 chr2 221813430 221814790 + 0 NA Intergenic Intergenic 622968 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 2123 chr2 2084751 2085800 + 0 NA intron (NM_001329845, intron 3 of 24) intron (NM_001329845, intron 3 of 24) -237729 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 530 chr10 121936609 121937351 + 0 NA Intergenic Intergenic 218955 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 3701 chr6 73521670 73522520 + 0 NA intron (NM_001160133, intron 1 of 14) L2c|LINE|L2 155381 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 3805 chr6 134831915 134832955 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR 28708 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 3067 chr3 194449800 194453091 + 0 NA intron (NR_037891, intron 1 of 3) LTR9|LTR|ERV1 22295 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 2675 chr20 57782081 57782885 + 0 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 16408 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174|dJ492J12.1 zinc finger protein 831 protein-coding 470 chr10 75404846 75405867 + 0 NA 3' UTR (NM_024875, exon 2 of 2) 3' UTR (NM_024875, exon 2 of 2) -3841 NM_021245 58529 Hs.238756 NM_021245 ENSG00000177791 MYOZ1 CS-2|FATZ|MYOZ myozenin 1 protein-coding 1524 chr14 88360717 88362380 + 0 NA Intergenic Intergenic 98067 NM_001201401 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 4142 chr7 133142774 133143521 + 0 NA intron (NM_001037126, intron 7 of 9) intron (NM_001037126, intron 7 of 9) 167512 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 2360 chr2 98552546 98553269 + 0 NA intron (NM_015348, intron 1 of 40) L1M4|LINE|L1 59447 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 1287 chr13 108463044 108463885 + 0 NA intron (NR_046848, intron 1 of 1) intron (NR_046848, intron 1 of 1) 24342 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 4650 chrUn_gl000225 95835 97509 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 2403 chr2 131486211 131487793 + 0 NA exon (NM_207364, exon 1 of 1) exon (NM_207364, exon 1 of 1) 359 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 654 chr11 36427714 36428595 + 0 NA intron (NM_001160167, intron 3 of 8) intron (NM_001160167, intron 3 of 8) 5607 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 2261 chr2 51048349 51049249 + 0 NA intron (NM_001135659, intron 5 of 23) intron (NM_001135659, intron 5 of 23) -125399 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 283 chr1 168014958 168015758 + 0 NA intron (NM_018442, intron 15 of 19) MIRb|SINE|MIR 47460 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 156 chr1 83724184 83725518 + 0 NA Intergenic Intergenic -272960 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 3993 chr7 77459493 77460941 + 0 NA intron (NM_001127358, intron 1 of 17) Charlie3|DNA|hAT-Charlie -9230 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 4178 chr7 147419164 147419992 + 0 NA intron (NM_014141, intron 13 of 23) intron (NM_014141, intron 13 of 23) 50807 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 3414 chr5 102989910 102990604 + 0 NA Intergenic Intergenic -91755 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 4278 chr8 33661650 33662636 + 0 NA Intergenic Intergenic -204519 NM_024025 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 1744 chr16 52549035 52549993 + 0 NA intron (NM_001080430, intron 1 of 6) intron (NM_001080430, intron 1 of 6) 31292 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 864 chr12 13809871 13810636 + 0 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -280574 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 2913 chr3 115956101 115957022 + 0 NA intron (NM_002338, intron 1 of 6) MIR|SINE|MIR -122310 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 1170 chr13 46420972 46422801 + 0 NA intron (NM_198849, intron 1 of 1) intron (NM_198849, intron 1 of 1) 3960 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 3382 chr5 71419681 71420836 + 0 NA intron (NM_005909, intron 2 of 6) intron (NM_005909, intron 2 of 6) 17163 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 1896 chr17 70490604 70491112 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 98085 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 2895 chr3 107738320 107739167 + 0 NA Intergenic Intergenic 71192 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 1042 chr12 107723773 107724353 + 0 NA intron (NM_001347944, intron 1 of 14) L2c|LINE|L2 9698 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 1686 chr16 7413383 7414114 + 0 NA intron (NM_145892, intron 1 of 12) intron (NM_145892, intron 1 of 12) 30997 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 3874 chr7 13943636 13944676 + 0 NA intron (NM_004956, intron 12 of 13) intron (NM_004956, intron 12 of 13) 81983 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 38 chr1 18229410 18230369 + 0 NA Intergenic Intergenic 148081 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 196 chr1 110202337 110203290 + 0 NA intron (NM_147148, intron 7 of 7) intron (NM_147148, intron 7 of 7) 4115 NM_000850 2948 Hs.348387 NM_000850 ENSG00000168765 GSTM4 GSTM4-4|GTM4 glutathione S-transferase mu 4 protein-coding 4745 chrY 28784274 28784558 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 909779 NR_002176 474148 Hs.511777 NR_002176 ENSG00000280961 TTTY3B LNCRNA00122|NCRNA00122 testis-specific transcript, Y-linked 3B (non-protein coding) ncRNA 4143 chr7 133162987 133164243 + 0 NA intron (NM_001037126, intron 8 of 9) intron (NM_001037126, intron 8 of 9) 187980 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 1169 chr13 46251182 46251831 + 0 NA Intergenic Intergenic 23813 NR_125786 103752581 NR_125786 LINC01055 - long intergenic non-protein coding RNA 1055 ncRNA 3816 chr6 138970061 138970560 + 0 NA Intergenic Intergenic -42495 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 118 chr1 52421228 52422445 + 0 NA intron (NM_002867, intron 2 of 4) MIR3|SINE|MIR 34600 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 1674 chr16 5699367 5700930 + 0 NA Intergenic Intergenic 17680 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 1065 chr12 114785229 114786311 + 0 NA Intergenic Intergenic 58198 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box 5 protein-coding 1659 chr15 92008762 92009584 + 0 NA intron (NR_110106, intron 1 of 3) L2b|LINE|L2 2604 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 767 chr11 114883343 114884197 + 0 NA Intergenic Intergenic -320526 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 4396 chr8 121989356 121990190 + 0 NA Intergenic Intergenic -165464 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 2173 chr2 15407974 15408722 + 0 NA intron (NM_015909, intron 44 of 51) intron (NM_015909, intron 44 of 51) 293124 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1020 chr12 104074192 104075422 + 0 NA intron (NM_017564, intron 25 of 68) intron (NM_017564, intron 25 of 68) 93738 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 805 chr11 122144103 122145233 + 0 NA intron (NR_137179, intron 2 of 4) intron (NR_137179, intron 2 of 4) 35527 NR_137193 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 84 chr1 37510984 37513428 + 0 NA Intergenic Intergenic -12362 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 4068 chr7 110676672 110678130 + 0 NA intron (NM_001244606, intron 4 of 6) intron (NM_001244606, intron 4 of 6) -53661 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 437 chr10 22869592 22870495 + 0 NA intron (NM_001330062, intron 4 of 9) intron (NM_001330062, intron 4 of 9) 132994 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 194 chr1 109159399 109160513 + 0 NA intron (NM_001010883, intron 5 of 10) L2a|LINE|L2 43788 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN1 methyltransferase homolog 1 protein-coding 3503 chr5 153541960 153542775 + 0 NA Intergenic Intergenic -27928 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 2749 chr21 42200842 42201784 + 0 NA intron (NM_001389, intron 1 of 32) L2a|LINE|L2 17726 NM_001389 1826 Hs.397800 NM_001389 ENSG00000171587 DSCAM CHD2|CHD2-42|CHD2-52 DS cell adhesion molecule protein-coding 1768 chr16 68507057 68508071 + 0 NA Intergenic Intergenic -25155 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 4129 chr7 131289935 131291796 + 0 NA Intergenic Intergenic -49489 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 2395 chr2 125648490 125649396 + 0 NA intron (NM_130773, intron 21 of 23) MLT1H1|LTR|ERVL-MaLR 866079 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1021 chr12 104175151 104176124 + 0 NA intron (NM_001031701, intron 12 of 13) intron (NM_001031701, intron 12 of 13) 59338 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 4212 chr8 3686611 3687438 + 0 NA intron (NM_033225, intron 5 of 69) L2a|LINE|L2 -1101033 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 934 chr12 67904051 67904767 + 0 NA Intergenic L2b|LINE|L2 -9453 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LOC100507175 - uncharacterized LOC100507175 ncRNA 1989 chr18 38730066 38730947 + 0 NA Intergenic L2a|LINE|L2 370055 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 4035 chr7 95562823 95563350 + 0 NA intron (NM_001278422, intron 5 of 15) intron (NM_001278422, intron 5 of 15) 161268 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 3537 chr5 161292022 161292832 + 0 NA intron (NM_001127648, intron 2 of 8) intron (NM_001127648, intron 2 of 8) 14724 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 948 chr12 77435426 77436516 + 0 NA intron (NM_203394, intron 7 of 12) L2a|LINE|L2 23389 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 4120 chr7 130004737 130006321 + 0 NA TTS (NR_133928) TTS (NR_133928) 1439 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 2160 chr2 11154441 11155335 + 0 NA Intergenic Intergenic 102825 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 3785 chr6 124131166 124131970 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 6577 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 2450 chr2 158863444 158864316 + 0 NA intron (NM_001135098, intron 1 of 8) intron (NM_001135098, intron 1 of 8) 12189 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 1398 chr14 59129194 59131158 + 0 NA Intergenic Intergenic 24621 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 3986 chr7 76303041 76304067 + 0 NA Intergenic Intergenic -46934 NM_012230 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 226 chr1 120379313 120380073 + 0 NA intron (NM_001047980, intron 6 of 7) AluY|SINE|Alu 7810 NM_001047980 343505 NM_001047980 NBPF7 - neuroblastoma breakpoint family member 7 protein-coding 4296 chr8 55132035 55133050 + 0 NA Intergenic Intergenic 84761 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 527 chr10 121137206 121138299 + 0 NA TTS (NR_039829) TTS (NR_039829) 268 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 1430 chr14 66481388 66482613 + 0 NA Intergenic Intergenic -471089 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 LINC00238 C14orf53|NCRNA00238 long intergenic non-protein coding RNA 238 ncRNA 1145 chr13 35335239 35336003 + 0 NA Intergenic Intergenic -120799 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 1870 chr17 50706795 50707941 + 0 NA Intergenic L1PA16|LINE|L1 -355512 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 3229 chr4 140796308 140797112 + 0 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 209788 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 2466 chr2 168577089 168578033 + 0 NA Intergenic CT-rich|Low_complexity|Low_complexity -97621 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 62 chr1 26224368 26225497 + 0 NA intron (NM_001145454, intron 4 of 4) intron (NM_001145454, intron 4 of 4) 7712 NM_203401 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 833 chr11 134583461 134584489 + 0 NA Intergenic Intergenic -271271 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 4513 chr9 34417381 34418205 + 0 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) -19944 NM_032596 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 2743 chr21 41694342 41695540 + 0 NA intron (NM_001389, intron 8 of 32) LTR16A|LTR|ERVL -60069 NR_038898 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 4588 chr9 112026260 112027152 + 0 NA intron (NM_018424, intron 5 of 15) intron (NM_018424, intron 5 of 15) 56538 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 3276 chr5 591746 592605 + 0 NA Intergenic L1PBa1|LINE|L1 20150 NR_103444 100996325 Hs.575249 NR_103444 LOC100996325 - uncharacterized LOC100996325 ncRNA 3649 chr6 39028703 39029419 + 0 NA intron (NR_136563, intron 3 of 13) MamRep434|DNA|TcMar-Tigger 12504 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 548 chr10 132766132 132767067 + 0 NA Intergenic Intergenic -5668 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 3450 chr5 133162586 133163152 + 0 NA Intergenic Intergenic -86499 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 2575 chr2 240158419 240159211 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -41662 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 4641 chrUn_gl000216 14740 15667 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 3697 chr6 69936413 69937162 + 0 NA intron (NM_001704, intron 17 of 31) MLT1H|LTR|ERVL-MaLR 570262 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 1110 chr12 129809787 129810607 + 0 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 117051 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 LOC101927735 - uncharacterized LOC101927735 ncRNA 3466 chr5 138513359 138514331 + 0 NA intron (NM_022464, intron 1 of 9) intron (NM_022464, intron 1 of 9) 20220 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 2204 chr2 33514641 33515653 + 0 NA intron (NM_001166266, intron 15 of 28) MSTB2|LTR|ERVL-MaLR -128436 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 1999 chr18 42777121 42778299 + 0 NA Intergenic Intergenic -15237 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 3632 chr6 34975200 34975933 + 0 NA intron (NM_015245, intron 10 of 23) intron (NM_015245, intron 10 of 23) 118528 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 783 chr11 116227006 116227954 + 0 NA Intergenic Intergenic -282659 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 1357 chr14 38874738 38876269 + 0 NA Intergenic Intergenic -149928 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain family 14 member A protein-coding 1152 chr13 37254499 37256615 + 0 NA intron (NM_203451, intron 1 of 1) intron (NM_203451, intron 1 of 1) 7508 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 4684 chrX 40687064 40687855 + 0 NA Intergenic HERVL40-int|LTR|ERVL 4990 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 789 chr11 118492602 118494590 + 0 NA intron (NM_001144758, intron 4 of 22) intron (NM_001144758, intron 4 of 22) 15290 NM_001144758 23187 Hs.504062 NM_015157 ENSG00000019144 PHLDB1 LL5A pleckstrin homology like domain family B member 1 protein-coding 49 chr1 19742085 19742875 + 0 NA intron (NM_004930, intron 2 of 8) intron (NM_004930, intron 2 of 8) 68721 NM_001282162 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line beta subunit protein-coding 2046 chr18 61307492 61309084 + 0 NA intron (NM_002974, intron 4 of 7) intron (NM_002974, intron 4 of 7) 3265 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 2967 chr3 133874718 133875848 + 0 NA TTS (NM_002958) TTS (NM_002958) 94303 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 2117 chr2 1167500 1168882 + 0 NA intron (NM_018968, intron 7 of 16) intron (NM_018968, intron 7 of 16) -221113 NR_136151 101060391 Hs.120377 NR_136151 LOC101060391 - uncharacterized LOC101060391 ncRNA 4398 chr8 124013732 124014899 + 0 NA Intergenic Intergenic 40348 NM_001330601 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 715 chr11 91982322 91983304 + 0 NA Intergenic Intergenic -102449 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1934 chr18 9837978 9839004 + 0 NA intron (NM_006868, intron 5 of 6) intron (NM_006868, intron 5 of 6) -47232 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 3615 chr6 23990111 23990986 + 0 NA Intergenic Intergenic -135866 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 2201 chr2 33315290 33316524 + 0 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -43757 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 1916 chr17 77434532 77435167 + 0 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 77381 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding protein, fox-1 homolog 3 protein-coding 4232 chr8 12315384 12316304 + 0 NA intron (NR_040092, intron 4 of 5) intron (NR_040092, intron 4 of 5) 21322 NR_040092 100506990 Hs.656893 NR_040091 LOC100506990 - uncharacterized LOC100506990 ncRNA 23 chr1 10793680 10794730 + 0 NA intron (NM_017766, intron 2 of 15) intron (NM_017766, intron 2 of 15) 62528 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 1722 chr16 24563737 24564911 + 0 NA intron (NM_006910, intron 3 of 17) intron (NM_006910, intron 3 of 17) 13416 NM_032626 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 364 chr1 207231964 207233143 + 0 NA intron (NM_001018053, intron 2 of 14) intron (NM_001018053, intron 2 of 14) 5933 NM_006212 5208 Hs.282702 NM_006212 ENSG00000123836 PFKFB2 PFK-2/FBPase-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding 3931 chr7 44212407 44213306 + 0 NA intron (NM_000162, intron 1 of 9) L1ME1|LINE|L1 -13969 NM_033508 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 3069 chr3 195170896 195174556 + 0 NA Intergenic Intergenic -8909 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 4568 chr9 93697136 93697864 + 0 NA Intergenic Intergenic 107798 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 950 chr12 77966249 77967958 + 0 NA Intergenic Intergenic -257966 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 2680 chr20 58678313 58679580 + 0 NA Intergenic Tigger9a|DNA|TcMar-Tigger 16205 NR_109918 729296 Hs.534781 NR_109916 LOC729296 - uncharacterized LOC729296 ncRNA 2957 chr3 131663023 131663653 + 0 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 41437 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 1445 chr14 71650357 71651221 + 0 NA Intergenic Intergenic -214265 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 1678 chr16 6192715 6193885 + 0 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 123596 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 1845 chr17 38949815 38951121 + 0 NA intron (NM_181535, intron 5 of 7) MER20B|DNA|hAT-Charlie 5743 NM_181535 162605 Hs.59736 NM_181535 ENSG00000173908 KRT28 K25IRS4|KRT25D keratin 28 protein-coding 1025 chr12 105171074 105171885 + 0 NA Intergenic Intergenic 150993 NM_032148 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 4692 chrX 67264437 67265652 + 0 NA 3' UTR (NM_002547, exon 25 of 25) 3' UTR (NM_002547, exon 25 of 25) 388255 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 3429 chr5 117000589 117001495 + 0 NA Intergenic Intergenic -65014 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 3580 chr6 15615952 15616918 + 0 NA intron (NM_001271668, intron 4 of 8) intron (NM_001271668, intron 4 of 8) 46854 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 4375 chr8 104053750 104054865 + 0 NA intron (NM_001695, intron 2 of 12) intron (NM_001695, intron 2 of 12) 21059 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 3073 chr4 3106958 3107497 + 0 NA intron (NM_002111, intron 5 of 66) L2a|LINE|L2 30819 NM_002111 3064 Hs.518450 NM_002111 ENSG00000197386 HTT HD|IT15 huntingtin protein-coding 1992 chr18 40212513 40213219 + 0 NA intron (NR_046174, intron 7 of 9) L2c|LINE|L2 446233 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 2478 chr2 175041123 175042439 + 0 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 71617 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 1466 chr14 78743516 78745267 + 0 NA intron (NR_073547, intron 2 of 20) intron (NR_073547, intron 2 of 20) 107675 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 4248 chr8 21221944 21222966 + 0 NA Intergenic Intergenic 66705 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 2340 chr2 90384951 90386496 + 0 NA Intergenic HSATII|Satellite|Satellite 1273839 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 4534 chr9 72479064 72479942 + 0 NA intron (NM_001308084, intron 4 of 4) intron (NM_001308084, intron 4 of 4) 43782 NM_001308084 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 778 chr11 115290965 115292057 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 24037 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 3555 chr6 330655 332017 + 0 NA intron (NR_104473, intron 3 of 5) intron (NR_104473, intron 3 of 5) 39279 NM_001286555 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 720 chr11 92574356 92575234 + 0 NA intron (NM_001008781, intron 17 of 24) intron (NM_001008781, intron 17 of 24) 73999 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 4430 chr8 135393236 135394328 + 0 NA Intergenic Intergenic -216532 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 2449 chr2 158689599 158690234 + 0 NA intron (NM_001347664, intron 1 of 11) intron (NM_001347664, intron 1 of 11) 4874 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 460 chr10 49798874 49799696 + 0 NA intron (NR_045675, intron 2 of 10) intron (NR_045675, intron 2 of 10) 13891 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 4627 chr9 138090230 138091764 + 0 NA Intergenic Intergenic 17542 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 244 chr1 153104295 153105034 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 9305 NR_003062 6702 Hs.2421 NR_003062 SPRR2C - small proline rich protein 2C (pseudogene) pseudo 4107 chr7 126794660 126796378 + 0 NA intron (NM_001127323, intron 2 of 10) intron (NM_001127323, intron 2 of 10) -59662 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 4168 chr7 141116186 141117181 + 0 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -134395 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 3744 chr6 107950751 107951398 + 0 NA intron (NM_018013, intron 5 of 6) intron (NM_018013, intron 5 of 6) 102526 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 sex comb on midleg-like 4 (Drosophila) protein-coding 3220 chr4 130374486 130375550 + 0 NA Intergenic Intergenic 317615 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LOC101927282 - uncharacterized LOC101927282 ncRNA 2811 chr3 15325721 15326608 + 0 NA intron (NM_001018009, intron 3 of 8) intron (NM_001018009, intron 3 of 8) 30473 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 3854 chr6 167551213 167551943 + 0 NA 3' UTR (NM_031409, exon 3 of 3) 3' UTR (NM_031409, exon 3 of 3) 15337 NM_031409 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 1607 chr15 58756084 58756817 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 32275 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 1386 chr14 52547082 52548434 + 0 NA Intergenic Intergenic -11812 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 1536 chr14 91013989 91015365 + 0 NA intron (NM_001320421, intron 20 of 20) intron (NM_001320421, intron 20 of 20) -31124 NR_135274 105370619 Hs.525530 NR_135274 LOC105370619 - uncharacterized LOC105370619 ncRNA 3893 chr7 26129806 26130938 + 0 NA Intergenic Intergenic -61475 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 2617 chr20 15868701 15869545 + 0 NA intron (NM_080676, intron 10 of 16) intron (NM_080676, intron 10 of 16) 34836 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 4187 chr7 156288704 156289722 + 0 NA intron (NR_103858, intron 1 of 1) intron (NR_103858, intron 1 of 1) -43972 NR_024119 64433 Hs.404170 NR_024119 ENSG00000279418 LINC00244 C7orf4|NCRNA00244 long intergenic non-protein coding RNA 244 ncRNA 452 chr10 39078824 39079827 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 89598 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 579 chr11 13156045 13157582 + 0 NA Intergenic Intergenic 125843 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 295 chr1 174767921 174769218 + 0 NA promoter-TSS (NM_001243765) promoter-TSS (NM_001243765) -466 NM_001330989 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 3956 chr7 67625457 67626348 + 0 NA Intergenic Intergenic 140662 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 1618 chr15 61360709 61361475 + 0 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 160410 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 4701 chrX 108076559 108078063 + 0 NA Intergenic Intergenic 97541 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 3301 chr5 8136213 8136930 + 0 NA Intergenic Intergenic 267354 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 3136 chr4 68426397 68427406 + 0 NA intron (NM_012108, intron 1 of 8) intron (NM_012108, intron 1 of 8) 2486 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 77 chr1 37117373 37118046 + 0 NA Intergenic Intergenic -168794 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 541 chr10 127139800 127140520 + 0 NA Intergenic Intergenic -122780 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 4317 chr8 75667371 75668534 + 0 NA intron (NR_033830, intron 5 of 5) intron (NR_033830, intron 5 of 5) 50024 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 3890 chr7 25567004 25568143 + 0 NA Intergenic Intergenic -299468 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 897 chr12 32536130 32536680 + 0 NA Intergenic Intergenic -102501 NM_001330374 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 1628 chr15 66517154 66518092 + 0 NA intron (NM_032445, intron 1 of 22) intron (NM_032445, intron 1 of 22) 28452 NM_032445 84465 Hs.712886 NM_032445 ENSG00000157890 MEGF11 - multiple EGF like domains 11 protein-coding 3219 chr4 130349365 130350232 + 0 NA Intergenic Intergenic 332516 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 3911 chr7 29810760 29811581 + 0 NA Intergenic Intergenic -35000 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 3871 chr7 8215749 8216761 + 0 NA intron (NM_004968, intron 6 of 13) intron (NM_004968, intron 6 of 13) 85427 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 3671 chr6 45876483 45877496 + 0 NA intron (NM_016929, intron 5 of 5) L1PA16|LINE|L1 28345 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 237 chr1 149033764 149036069 + 0 NA intron (NR_104217, intron 2 of 17).2 HSATII|Satellite|Satellite 74809 NR_104217 101929780 Hs.534675 NR_104217 ENSG00000272150 NBPF25P WI2-925H4.1 neuroblastoma breakpoint family member 25, pseudogene pseudo 2584 chr20 3576056 3577165 + 0 NA intron (NM_139321, intron 20 of 28) intron (NM_139321, intron 20 of 28) 67436 NM_022139 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 2722 chr21 35965442 35966765 + 0 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 20039 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 2371 chr2 106398702 106399664 + 0 NA intron (NM_001004722, intron 1 of 3) intron (NM_001004722, intron 1 of 3) 37663 NM_001004722 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 2519 chr2 208275814 208276527 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -118446 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 2923 chr3 121906283 121907424 + 0 NA intron (NM_001178065, intron 1 of 6) MIRb|SINE|MIR 3672 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1 calcium sensing receptor protein-coding 2610 chr20 12368168 12368964 + 0 NA Intergenic Intergenic 470053 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 416 chr1 246362241 246362966 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 218111 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 2950 chr3 130529661 130531319 + 0 NA Intergenic AluJo|SINE|Alu -38879 NM_001199182 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 4154 chr7 133543613 133544824 + 0 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) -34577 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 3212 chr4 129375483 129376588 + 0 NA intron (NR_125882, intron 1 of 8) intron (NR_125882, intron 1 of 8) 26864 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 4407 chr8 125113081 125113822 + 0 NA exon (NM_001039112, exon 38 of 41) exon (NM_001039112, exon 38 of 41) -60428 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 914 chr12 49608335 49609554 + 0 NA Intergenic Intergenic -12765 NM_001303117 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 100 chr1 44857020 44857645 + 0 NA Intergenic Intergenic -13500 NM_018150 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 300 chr1 177738948 177739892 + 0 NA Intergenic Intergenic 69761 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 1439 chr14 69748044 69748915 + 0 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 21798 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 4419 chr8 128731933 128732612 + 0 NA intron (NR_117102, intron 1 of 3) AluJb|SINE|Alu 13941 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 3654 chr6 40160488 40161363 + 0 NA Intergenic Intergenic 162820 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 2405 chr2 133281039 133281946 + 0 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 107345 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 4710 chrX 111079313 111080643 + 0 NA intron (NM_012471, intron 6 of 10) L2a|LINE|L2 -39301 NM_001195576 100329135 Hs.247868 NM_001195576 ENSG00000204025 TRPC5OS TRPC5-AS1 TRPC5 opposite strand protein-coding 2232 chr2 46205823 46206959 + 0 NA intron (NM_005400, intron 4 of 14) intron (NM_005400, intron 4 of 14) -318150 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 3642 chr6 37946867 37948735 + 0 NA intron (NM_021943, intron 2 of 5) MER45A|DNA|hAT-Tip100 160494 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 4646 chrUn_gl000216 153311 155988 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 2432 chr2 147954912 147956837 + 0 NA Intergenic Intergenic 611249 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1407 chr14 60095757 60097159 + 0 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) 1074 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 3946 chr7 61742489 61743873 + 0 NA Intergenic HSATII|Satellite|Satellite 1021253 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 496 chr10 90199467 90200460 + 0 NA intron (NM_001031709, intron 4 of 6) intron (NM_001031709, intron 4 of 6) 143119 NM_018363 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 2829 chr3 37534392 37535260 + 0 NA intron (NM_002207, intron 4 of 27) intron (NM_002207, intron 4 of 27) 41013 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 605 chr11 20295248 20296169 + 0 NA Intergenic Intergenic -89523 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 2987 chr3 139921684 139922918 + 0 NA intron (NM_022131, intron 2 of 16) L2a|LINE|L2 268274 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 2581 chr20 2972237 2972831 + 0 NA intron (NM_002836, intron 13 of 27) intron (NM_002836, intron 13 of 27) -51734 NM_001310220 2797 Hs.129715 NM_001501 ENSG00000125787 GNRH2 GnRH-II|LH-RHII gonadotropin releasing hormone 2 protein-coding 1699 chr16 12327559 12328591 + 0 NA intron (NM_032167, intron 14 of 20) L1MB7|LINE|L1 257484 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 42 chr1 18404142 18404918 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 12379 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 759 chr11 112274576 112275502 + 0 NA Intergenic LTR16A|LTR|ERVL -77916 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LOC101928823 - uncharacterized LOC101928823 ncRNA 1228 chr13 98872939 98875146 + 0 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 13264 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 235 chr1 147057090 147058089 + 0 NA intron (NM_004326, intron 1 of 9) MIRc|SINE|MIR 44318 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 2291 chr2 62888019 62888971 + 0 NA Intergenic Intergenic -12491 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 2591 chr20 5449579 5450336 + 0 NA Intergenic Intergenic -1885 NR_029405 643406 Hs.431161 NM_175877 LOC643406 - uncharacterized LOC643406 ncRNA 1931 chr18 3836139 3837285 + 0 NA intron (NM_004746, intron 4 of 12) intron (NM_004746, intron 4 of 12) 8646 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 694 chr11 77117087 77118094 + 0 NA intron (NM_001128620, intron 1 of 15) AluJb|SINE|Alu 67518 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 PAKalpha p21 (RAC1) activated kinase 1 protein-coding 1103 chr12 128531365 128532765 + 0 NA Intergenic Intergenic -20354 NR_131985 105370070 NR_131985 ENSG00000256643 CRAT8 - cervical cancer-associated transcript 8 ncRNA 4444 chr8 140817255 140819723 + 0 NA intron (NM_031466, intron 21 of 22) intron (NM_031466, intron 21 of 22) -103190 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 4268 chr8 31660254 31660929 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 163323 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 3788 chr6 124209737 124210697 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 85226 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 3148 chr4 75393896 75395237 + 0 NA Intergenic Intergenic 83751 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 2244 chr2 49271780 49273210 + 0 NA intron (NM_000145, intron 2 of 9) MER5A1|DNA|hAT-Charlie -14247 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 296 chr1 174923606 174924709 + 0 NA promoter-TSS (NR_121196) promoter-TSS (NR_121196) -759 NR_121196 101928696 Hs.666680 NR_121196 ENSG00000229531 LOC101928696 - uncharacterized LOC101928696 ncRNA 265 chr1 163619870 163620892 + 0 NA Intergenic Intergenic -227400 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 171 chr1 89633146 89634088 + 0 NA intron (NM_207398, intron 2 of 10) MER65-int|LTR|ERV1 8106 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 3999 chr7 77759618 77760863 + 0 NA intron (NM_001301128, intron 17 of 20) intron (NM_001301128, intron 17 of 20) -216319 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 4327 chr8 82129760 82130703 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -62487 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 4206 chr8 2274565 2275647 + 0 NA Intergenic L2c|LINE|L2 205347 NR_125423 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 2687 chr21 10697920 10703744 + 0 NA Intergenic ALR/Alpha|Satellite|centr 290111 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 2012 chr18 47047591 47048319 + 0 NA Intergenic Intergenic -29020 NM_001199345 6139 Hs.293653 NM_000985 ENSG00000215472 RPL17 L17|PD-1|RPL23 ribosomal protein L17 protein-coding 3201 chr4 114031421 114032256 + 0 NA intron (NM_001148, intron 1 of 45) intron (NM_001148, intron 1 of 45) 3819 NR_031641 100302188 NR_031641 ENSG00000283193 MIR1243 MIRN1243|hsa-mir-1243 microRNA 1243 ncRNA 582 chr11 13910841 13912014 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 34983 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LOC101928132 - uncharacterized LOC101928132 ncRNA 3257 chr4 170926360 170927425 + 0 NA exon (NM_021647, exon 2 of 3) exon (NM_021647, exon 2 of 3) -1949 NM_001009554 9848 Hs.593942 NM_021647 ENSG00000198948 MFAP3L NYD-sp9 microfibrillar associated protein 3 like protein-coding 1884 chr17 55612557 55613486 + 0 NA intron (NM_170721, intron 6 of 9) intron (NM_170721, intron 6 of 9) -12063 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 4167 chr7 140994727 140995970 + 0 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) 221316 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 557 chr11 8835732 8836541 + 0 NA intron (NM_005418, intron 3 of 22) L2b|LINE|L2 -3254 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 3621 chr6 24256947 24258046 + 0 NA intron (NM_016356, intron 7 of 9) intron (NM_016356, intron 7 of 9) -99635 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 2726 chr21 36314261 36315609 + 0 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -53948 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 441 chr10 24915782 24916486 + 0 NA intron (NM_020824, intron 7 of 25) intron (NM_020824, intron 7 of 25) 96463 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 4041 chr7 98191477 98192900 + 0 NA Intergenic Intergenic -54409 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 3325 chr5 38537860 38538849 + 0 NA intron (NM_002310, intron 1 of 19) L2|LINE|L2 18394 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 672 chr11 51590038 51591657 + 0 NA Intergenic ALR/Alpha|Satellite|centr 75565 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 983 chr12 97572414 97573417 + 0 NA Intergenic Intergenic 271671 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 4257 chr8 27814391 27815101 + 0 NA intron (NM_173833, intron 3 of 8) intron (NM_173833, intron 3 of 8) 35623 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 3806 chr6 134990465 134991250 + 0 NA Intergenic Intergenic -129714 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 3689 chr6 57147517 57148503 + 0 NA Intergenic Intergenic -19866 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 4482 chr9 9563516 9564676 + 0 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -235296 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 3496 chr5 153430656 153431814 + 0 NA intron (NM_005927, intron 2 of 2) intron (NM_005927, intron 2 of 2) 12716 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibrillar associated protein 3 protein-coding 751 chr11 110500088 110501040 + 0 NA intron (NM_001258415, intron 3 of 14) MLT1F2|LTR|ERVL-MaLR 82209 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 1746 chr16 52851040 52852036 + 0 NA Intergenic Intergenic -210651 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility candidate 16 (non-protein coding) ncRNA 4551 chr9 84724386 84725351 + 0 NA Intergenic Intergenic 121181 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 4300 chr8 60555985 60556867 + 0 NA Intergenic Intergenic -524659 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 3356 chr5 57388232 57388918 + 0 NA Intergenic Intergenic 29593 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 2167 chr2 12683749 12684694 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -172777 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 1980 chr18 35567556 35568689 + 0 NA Intergenic Intergenic 331024 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 2275 chr2 58276238 58276976 + 0 NA intron (NM_006296, intron 2 of 12) MER105|DNA|DNA 2760 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 4004 chr7 78704934 78705966 + 0 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 67146 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 677 chr11 62537198 62537969 + 0 NA Intergenic Intergenic -1192 NM_006473 10629 Hs.714400 NM_006473 ENSG00000162227 TAF6L PAF65A TATA-box binding protein associated factor 6 like protein-coding 907 chr12 41907704 41908455 + 0 NA intron (NM_013377, intron 3 of 7) MER124|DNA?|DNA? 76538 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 1868 chr17 49823527 49824625 + 0 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 410000 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 3480 chr5 146045866 146046456 + 0 NA intron (NM_181675, intron 5 of 9) L3|LINE|CR1 -150485 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding 3154 chr4 77890304 77891777 + 0 NA intron (NM_018243, intron 1 of 9) intron (NM_018243, intron 1 of 9) 20173 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPT11 - septin 11 protein-coding 590 chr11 15764290 15765265 + 0 NA Intergenic Intergenic 99346 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 1210 chr13 93371874 93372740 + 0 NA promoter-TSS (NR_049776) promoter-TSS (NR_049776) -80 NR_049775 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 4201 chr8 558489 559261 + 0 NA Intergenic Intergenic -63094 NM_175075 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 664 chr11 48887977 48888714 + 0 NA Intergenic ALR/Alpha|Satellite|centr -164807 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 1790 chr16 79486269 79487203 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR 147886 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 4363 chr8 100809294 100811419 + 0 NA intron (NM_152564, intron 43 of 61) intron (NM_152564, intron 43 of 61) 95886 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 2264 chr2 51093945 51095025 + 0 NA intron (NM_001135659, intron 5 of 23) intron (NM_001135659, intron 5 of 23) 165189 NM_001330085 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 79 chr1 37316411 37317976 + 0 NA intron (NM_000831, intron 8 of 15) intron (NM_000831, intron 8 of 15) 182651 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 3845 chr6 158575620 158576570 + 0 NA intron (NR_073096, intron 3 of 12) intron (NR_073096, intron 3 of 12) 13217 NM_032861 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 1420 chr14 63057669 63058364 + 0 NA Intergenic LTR88a|LTR|Gypsy? -451325 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 3295 chr5 7801777 7802645 + 0 NA intron (NM_020546, intron 20 of 24) intron (NM_020546, intron 20 of 24) 49392 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 3437 chr5 123653121 123653860 + 0 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 120723 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 352 chr1 204871615 204872868 + 0 NA intron (NM_001160332, intron 1 of 27) intron (NM_001160332, intron 1 of 27) -41113 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NF|NRCAML neurofascin protein-coding 2502 chr2 192399124 192399903 + 0 NA Intergenic L2b|LINE|L2 -143285 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 3865 chr7 3480890 3481993 + 0 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 140361 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 126 chr1 59010699 59011729 + 0 NA intron (NM_145243, intron 1 of 8) intron (NM_145243, intron 1 of 8) 1257 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 1034 chr12 106166803 106168280 + 0 NA Intergenic Intergenic 66989 NR_110111 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 2803 chr3 5385125 5385890 + 0 NA Intergenic Intergenic -93567 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 2875 chr3 97418644 97419480 + 0 NA intron (NM_001080448, intron 14 of 17) LTR16D|LTR|ERVL -64303 NR_136601 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 1533 chr14 90429518 90430710 + 0 NA intron (NM_001008744, intron 2 of 15) intron (NM_001008744, intron 2 of 15) 7801 NM_001330205 55775 Hs.209945 NM_018319 ENSG00000042088 TDP1 - tyrosyl-DNA phosphodiesterase 1 protein-coding 3679 chr6 49881285 49881990 + 0 NA Intergenic Intergenic 35520 NM_001166478 403339 Hs.558270 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 protein-coding 651 chr11 36187342 36188027 + 0 NA intron (NM_174902, intron 4 of 5) intron (NM_174902, intron 4 of 5) -88233 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 176 chr1 90329084 90329810 + 0 NA intron (NM_018103, intron 2 of 2) intron (NM_018103, intron 2 of 2) 41967 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family member D protein-coding 4660 chrX 9577462 9578359 + 0 NA intron (NM_001139468, intron 3 of 17) L1ME4a|LINE|L1 144709 NM_005647 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1X-linked protein-coding 3145 chr4 74455985 74456831 + 0 NA intron (NM_201431, intron 4 of 10) LTR86A2|LTR|ERVL 29879 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 947 chr12 77274542 77275811 + 0 NA Intergenic MIRb|SINE|MIR -2356 NM_001300965 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 256 chr1 162269634 162270773 + 0 NA intron (NM_001164757, intron 3 of 9) intron (NM_001164757, intron 3 of 9) -42133 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 2810 chr3 14421248 14421921 + 0 NA Intergenic AluJb|SINE|Alu -22492 NR_103507 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 920 chr12 52468560 52469496 + 0 NA intron (NM_021934, intron 3 of 3) intron (NM_021934, intron 3 of 3) -4452 NR_120437 26628 Hs.524431 NR_120437 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 428 chr10 12639633 12640705 + 0 NA intron (NM_020397, intron 2 of 9) intron (NM_020397, intron 2 of 9) 19417 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 2305 chr2 67539911 67541530 + 0 NA Intergenic Intergenic -83722 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 Ewing tumor associated antigen 1 protein-coding 4545 chr9 81640930 81641912 + 0 NA Intergenic L2|LINE|L2 119160 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 4344 chr8 93179688 93180799 + 0 NA promoter-TSS (NR_106988).27 promoter-TSS (NR_106988).27 -504 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 3758 chr6 111907345 111908439 + 0 NA intron (NM_147200, intron 3 of 9) intron (NM_147200, intron 3 of 9) 19262 NM_147200 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 3545 chr5 174805150 174806130 + 0 NA Intergenic X7A_LINE|LINE|CR1 65523 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 500 chr10 93148766 93149580 + 0 NA intron (NR_024467, intron 3 of 4) L2c|LINE|L2 -20869 NM_001284274 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 1221 chr13 95084446 95086472 + 0 NA Intergenic Intergenic 46477 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 1200 chr13 74784601 74785251 + 0 NA Intergenic Intergenic -20655 NR_144451 100507612 Hs.447508 NR_144451 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 1757 chr16 63448852 63449457 + 0 NA Intergenic Intergenic -1378415 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 4193 chr7 157977207 157978079 + 0 NA intron (NM_130843, intron 5 of 21) L1ME1|LINE|L1 330366 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 918 chr12 51771091 51772121 + 0 NA intron (NM_007210, intron 3 of 11) intron (NM_007210, intron 3 of 11) -13495 NM_001267615 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 1413 chr14 61663792 61664686 + 0 NA Intergenic MSTC|LTR|ERVL-MaLR 84291 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 4386 chr8 117822543 117823416 + 0 NA Intergenic Intergenic 44237 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23, small subunit processome component protein-coding 2107 chr19 53817606 53818882 + 0 NA Intergenic Intergenic -18728 NM_001321522 91664 Hs.720672 NM_138374 ENSG00000213799 ZNF845 - zinc finger protein 845 protein-coding 1275 chr13 104417534 104418382 + 0 NA Intergenic L2|LINE|L2 340408 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 2211 chr2 38476633 38477459 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 118799 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 1598 chr15 54245216 54245903 + 0 NA Intergenic Intergenic -24818 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 3453 chr5 135609098 135609743 + 0 NA intron (NM_001167576, intron 2 of 9) intron (NM_001167576, intron 2 of 9) 28124 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1856 chr17 46264718 46266254 + 0 NA intron (NM_001075099, intron 5 of 12) intron (NM_001075099, intron 5 of 12) -31613 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 1491 chr14 80085976 80087126 + 0 NA intron (NM_001105250, intron 2 of 6) intron (NM_001105250, intron 2 of 6) 340869 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1362 chr14 42368324 42369348 + 0 NA intron (NR_144389, intron 6 of 6) intron (NR_144389, intron 6 of 6) 292777 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 4155 chr7 135486463 135487655 + 0 NA Intergenic Intergenic -53465 NM_205855 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 1804 chr17 14185942 14186561 + 0 NA Intergenic Intergenic -18116 NM_006041 9953 Hs.48384 NM_006041 ENSG00000125430 HS3ST3B1 3-OST-3B|3OST3B1|h3-OST-3B heparan sulfate-glucosamine 3-sulfotransferase 3B1 protein-coding 632 chr11 25990508 25991510 + 0 NA Intergenic Intergenic -219661 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 2357 chr2 98070261 98070956 + 0 NA Intergenic AluJb|SINE|Alu 19012 NR_130704 100506123 Hs.720604 NR_040097 LOC100506123 - uncharacterized LOC100506123 ncRNA 394 chr1 229340898 229342429 + 0 NA Intergenic Intergenic -31115 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1371 chr14 43399148 43399991 + 0 NA Intergenic Intergenic 1323510 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 2484 chr2 177391344 177392961 + 0 NA Intergenic Intergenic 73628 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 2659 chr20 46771752 46772818 + 0 NA Intergenic Intergenic -153424 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 513 chr10 100704232 100705064 + 0 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -20323 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 3938 chr7 51205472 51206403 + 0 NA intron (NM_001287438, intron 5 of 7) intron (NM_001287438, intron 5 of 7) 178621 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 50 chr1 19804110 19805155 + 0 NA intron (NM_001206541, intron 1 of 8) intron (NM_001206541, intron 1 of 8) 6569 NM_001282162 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line beta subunit protein-coding 2645 chr20 33823456 33824333 + 0 NA intron (NM_006690, intron 1 of 8) intron (NM_006690, intron 1 of 8) 9355 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 1519 chr14 85319732 85321921 + 0 NA Intergenic Intergenic -532793 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 2633 chr20 20583234 20584735 + 0 NA intron (NM_020343, intron 15 of 39) L4|LINE|RTE 109282 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 3173 chr4 86409456 86410121 + 0 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 13504 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 797 chr11 121424556 121426512 + 0 NA intron (NM_003105, intron 17 of 47) Tigger15a|DNA|TcMar-Tigger 102622 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 2459 chr2 166538086 166538902 + 0 NA 3' UTR (NM_024969, exon 5 of 5) 3' UTR (NM_024969, exon 5 of 5) 109648 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 2197 chr2 30605832 30606685 + 0 NA Intergenic Intergenic 36746 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 3543 chr5 174658395 174659445 + 0 NA Intergenic Intergenic 212243 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 4318 chr8 75727125 75728177 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -9121 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 1236 chr13 99705682 99706507 + 0 NA intron (NM_001130049, intron 1 of 32) intron (NM_001130049, intron 1 of 32) 32566 NM_001130049 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 2413 chr2 135418217 135419686 + 0 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 57620 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 645 chr11 35176816 35177846 + 0 NA intron (NM_001202556, intron 1 of 7) intron (NM_001202556, intron 1 of 7) 16914 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 4400 chr8 124669449 124670689 + 0 NA Intergenic Intergenic -4879 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 2566 chr2 236812638 236813642 + 0 NA intron (NM_001037131, intron 10 of 17) intron (NM_001037131, intron 10 of 17) 263512 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 1176 chr13 49403072 49404096 + 0 NA Intergenic Intergenic -146464 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 2881 chr3 97751564 97752281 + 0 NA intron (NR_047685, intron 2 of 9) intron (NR_047685, intron 2 of 9) 2226 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 1039 chr12 107001999 107003039 + 0 NA intron (NM_001206691, intron 1 of 17) intron (NM_001206691, intron 1 of 17) 7604 NM_001206691 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 1815 chr17 30858572 30859542 + 0 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 44952 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 3662 chr6 41483460 41484487 + 0 NA intron (NR_120347, intron 2 of 2) intron (NR_120347, intron 2 of 2) 13791 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 1005 chr12 101081945 101083094 + 0 NA Intergenic Intergenic 95123 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 4723 chrX 130021331 130021986 + 0 NA intron (NM_006375, intron 2 of 14) intron (NM_006375, intron 2 of 14) 15633 NM_001281736 10495 Hs.171458 NM_006375 ENSG00000165675 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 4280 chr8 37228481 37229040 + 0 NA intron (NR_031672, intron 2 of 2).2 intron (NR_031672, intron 2 of 2).2 122671 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 28 chr1 14158618 14159512 + 0 NA Intergenic Intergenic 83189 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 4130 chr7 131450490 131451178 + 0 NA Intergenic Intergenic -144145 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 2089 chr19 32961892 32963160 + 0 NA intron (NM_207325, intron 16 of 18) intron (NM_207325, intron 16 of 18) 65504 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like 3 (C. elegans) protein-coding 2087 chr19 31296222 31297142 + 0 NA Intergenic Intergenic 433382 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 3474 chr5 141695362 141696137 + 0 NA intron (NM_001127496, intron 1 of 1) intron (NM_001127496, intron 1 of 1) 2138 NR_131221 100642175 Hs.684549 NR_131221 ENSG00000281881 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 4575 chr9 99450271 99451113 + 0 NA Intergenic LTR16A2|LTR|ERVL -33093 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 AAED1 C9orf21 AhpC/TSA antioxidant enzyme domain containing 1 protein-coding 215 chr1 116785574 116786886 + 0 NA Intergenic L2c|LINE|L2 -129565 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 - ATPase Na+/K+ transporting subunit alpha 1 protein-coding 4410 chr8 125783659 125784763 + 0 NA Intergenic Intergenic -43463 NM_001282974 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS1, I-BAR domain containing protein-coding 3320 chr5 31504035 31504713 + 0 NA intron (NM_001100412, intron 10 of 34) intron (NM_001100412, intron 10 of 34) 27908 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 687 chr11 74361457 74362528 + 0 NA Intergenic Intergenic 58342 NR_046410 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 2184 chr2 26362311 26363179 + 0 NA Intergenic Intergenic -33215 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 3161 chr4 81286994 81287849 + 0 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 30547 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 C4orf22 - chromosome 4 open reading frame 22 protein-coding 2298 chr2 66462880 66464755 + 0 NA Intergenic Intergenic 121643 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 2336 chr2 90372647 90377474 + 0 NA Intergenic HSATII|Satellite|Satellite 1263176 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 4424 chr8 131626724 131628486 + 0 NA Intergenic Intergenic -171699 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 2190 chr2 29272986 29274290 + 0 NA intron (NM_001321538, intron 18 of 18) intron (NM_001321538, intron 18 of 18) 23489 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 C2orf71 RP54 chromosome 2 open reading frame 71 protein-coding 826 chr11 129803532 129804440 + 0 NA intron (NM_020228, intron 9 of 21) L2|LINE|L2 13531 NM_199439 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 3990 chr7 76352561 76354066 + 0 NA Intergenic Intergenic -96693 NM_012230 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 2494 chr2 179206371 179207442 + 0 NA intron (NM_032523, intron 11 of 24) intron (NM_032523, intron 11 of 24) 21935 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 1344 chr14 36813861 36816685 + 0 NA Intergenic Intergenic -25391 NM_001308110 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 3840 chr6 157417239 157418162 + 0 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) -316835 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 3338 chr5 49971899 49972750 + 0 NA intron (NM_001331028, intron 2 of 25) intron (NM_001331028, intron 2 of 25) 8944 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 2329 chr2 89848437 89849370 + 0 NA Intergenic HSATII|Satellite|Satellite 737019 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 4437 chr8 135821828 135823140 + 0 NA Intergenic Intergenic -5296 NR_029599 407033 NR_029599 ENSG00000199153 MIR30D MIRN30D|mir-30d microRNA 30d ncRNA 2980 chr3 136601789 136603137 + 0 NA intron (NM_001291999, intron 1 of 3) L2a|LINE|L2 21413 NM_006153 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 2653 chr20 40936848 40938293 + 0 NA intron (NM_007050, intron 12 of 30) intron (NM_007050, intron 12 of 30) -376553 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 2548 chr2 226262791 226263788 + 0 NA Intergenic Intergenic -2313 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 620 chr11 22451600 22453386 + 0 NA Intergenic L1ME4a|LINE|L1 61072 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 4194 chr7 158023970 158024771 + 0 NA intron (NM_001308267, intron 2 of 21) L1M3f|LINE|L1 301135 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 2625 chr20 19091221 19092223 + 0 NA Intergenic Intergenic -101568 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 4090 chr7 117450282 117451483 + 0 NA exon (NM_033427, exon 3 of 23) exon (NM_033427, exon 3 of 23) 62679 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 3400 chr5 94026381 94027268 + 0 NA intron (NM_032290, intron 18 of 20) intron (NM_032290, intron 18 of 20) 72433 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 937 chr12 68569399 68570276 + 0 NA Intergenic Intergenic -16316 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 3266 chr4 183133243 183134023 + 0 NA Intergenic Intergenic -30951 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 730 chr11 93008033 93009185 + 0 NA Intergenic L4|LINE|RTE -55274 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 16 chr1 8689263 8690037 + 0 NA intron (NM_012102, intron 3 of 23) intron (NM_012102, intron 3 of 23) -134677 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 921 chr12 52483928 52484977 + 0 NA intron (NR_120438, intron 2 of 2) HAL1|LINE|L1 -2901 NR_120440 26628 Hs.524431 NR_120437 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 3833 chr6 155250976 155252134 + 0 NA Intergenic Intergenic 77061 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 2880 chr3 97745925 97746782 + 0 NA intron (NR_047685, intron 2 of 9) intron (NR_047685, intron 2 of 9) 7795 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 2311 chr2 70344210 70345175 + 0 NA Intergenic MER112|DNA|hAT-Charlie 7756 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 3631 chr6 33918341 33919787 + 0 NA Intergenic Intergenic 48764 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 2556 chr2 230199995 230200815 + 0 NA Intergenic Intergenic -64348 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 994 chr12 98452359 98454734 + 0 NA Intergenic MSTB2|LTR|ERVL-MaLR -64320 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 1786 chr16 78942874 78943584 + 0 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 691393 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 2320 chr2 78757655 78758561 + 0 NA Intergenic Intergenic -14549 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 2788 chr22 40196836 40197754 + 0 NA intron (NM_152512, intron 5 of 6) intron (NM_152512, intron 5 of 6) 92499 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 2440 chr2 150741750 150742927 + 0 NA Intergenic Intergenic -298008 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria and homocystinuria, cblD type protein-coding 2140 chr2 4956034 4956902 + 0 NA Intergenic Intergenic -252656 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 1523 chr14 86823903 86825008 + 0 NA Intergenic UCON12|Unknown|Unknown 423433 NR_110155 101928767 Hs.536380 NR_110155 LOC101928767 - uncharacterized LOC101928767 ncRNA 4667 chrX 11496760 11497547 + 0 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) -51248 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 3578 chr6 15476388 15477674 + 0 NA intron (NM_004973, intron 5 of 17) intron (NM_004973, intron 5 of 17) 186258 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 93 chr1 38994191 38994945 + 0 NA Intergenic L2b|LINE|L2 -314129 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 3055 chr3 187389360 187391230 + 0 NA Intergenic Intergenic -2094 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 3040 chr3 176505278 176505879 + 0 NA Intergenic MER61D|LTR|ERV1 29211 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 2429 chr2 145977635 145979780 + 0 NA Intergenic Intergenic 553173 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 374 chr1 209424830 209426351 + 0 NA Intergenic Intergenic -73211 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 2790 chr22 43843085 43843910 + 0 NA intron (NM_001044370, intron 3 of 6) intron (NM_001044370, intron 3 of 6) 35477 NM_001044370 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 3876 chr7 14428200 14430113 + 0 NA intron (NM_145695, intron 20 of 23) intron (NM_145695, intron 20 of 23) -398106 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 429 chr10 12674955 12675822 + 0 NA intron (NM_020397, intron 2 of 9) intron (NM_020397, intron 2 of 9) 19808 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 1306 chr13 112697702 112698532 + 0 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -23796 NM_005986 6656 Hs.202526 NM_005986 ENSG00000182968 SOX1 - SRY-box 1 protein-coding 4576 chr9 99997054 99997710 + 0 NA intron (NR_136286, intron 1 of 17) intron (NR_136286, intron 1 of 17) -3326 NR_036527 57653 Hs.435629 NR_036527 ENSG00000255036 LOC100499484-C9ORF174 - LOC100499484-C9orf174 readthrough ncRNA 3688 chr6 54583296 54584386 + 0 NA Intergenic Intergenic -127728 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 3767 chr6 118313284 118314700 + 0 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 85303 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 3097 chr4 20971894 20973077 + 0 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -88152 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 1328 chr14 30283420 30285005 + 0 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 112687 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 4049 chr7 105671426 105672957 + 0 NA intron (NM_152750, intron 18 of 18) intron (NM_152750, intron 18 of 18) 68534 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 409 chr1 236086428 236087423 + 0 NA Intergenic Intergenic -39917 NM_001301365 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 1091 chr12 119809639 119811043 + 0 NA intron (NM_178499, intron 1 of 13) LTR89|LTR|ERVL? 37824 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 4594 chr9 117667095 117668004 + 0 NA intron (NM_001252290, intron 3 of 4) intron (NM_001252290, intron 3 of 4) 25326 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 812 chr11 123178517 123179428 + 0 NA Intergenic Intergenic 73248 NR_039714 100616319 NR_039714 ENSG00000265357 MIR4493 - microRNA 4493 ncRNA 1958 chr18 25734058 25734858 + 0 NA intron (NM_001792, intron 1 of 15) L3|LINE|CR1 22952 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 1962 chr18 30631070 30631796 + 0 NA intron (NM_001308126, intron 20 of 22) intron (NM_001308126, intron 20 of 22) -278459 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 489 chr10 81266934 81267887 + 0 NA TTS (NR_136625) TTS (NR_136625) 3328 NR_136624 729815 Hs.564060 NR_136624 LOC729815 - uncharacterized LOC729815 ncRNA 585 chr11 15243708 15245378 + 0 NA intron (NM_001278316, intron 6 of 10) MER102c|DNA|hAT-Charlie 73895 NM_001278313 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - inscuteable homolog (Drosophila) protein-coding 3711 chr6 83402486 83403342 + 0 NA Intergenic Intergenic 328953 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 1392 chr14 55920646 55921964 + 0 NA Intergenic Intergenic -14042 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 4633 chr9_gl000199_random 43437 69890 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 1080 chr12 117560708 117561629 + 0 NA intron (NR_120464, intron 2 of 2) MER5A|DNA|hAT-Charlie 23896 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 4724 chrX 131426626 131427235 + 0 NA intron (NR_110410, intron 2 of 2) intron (NR_110410, intron 2 of 2) -73422 NM_001271187 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 2819 chr3 29601146 29601634 + 0 NA intron (NM_001003793, intron 3 of 14) intron (NM_001003793, intron 3 of 14) 278587 NM_001177711 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 732 chr11 93252352 93253254 + 0 NA intron (NM_020179, intron 1 of 2) intron (NM_020179, intron 1 of 2) 23743 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 4653 chrUn_gl000228 115753 119937 + 0 NA intron (NR_137167, intron 2 of 5) BSR/Beta|Satellite|Satellite 5240 NM_001306068 100288687 Hs.728749 NM_001205218 ENSG00000260596 DUX4 DUX4L double homeobox 4 protein-coding 2233 chr2 46484453 46485260 + 0 NA Intergenic Intergenic -39685 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 622 chr11 22724565 22726099 + 0 NA intron (NM_001143830, intron 3 of 7) intron (NM_001143830, intron 3 of 7) 29013 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 - growth arrest specific 2 protein-coding 970 chr12 92428464 92429432 + 0 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 106541 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 2381 chr2 109811327 109813177 + 0 NA intron (NM_001099289, intron 1 of 9) CR1_Mam|LINE|CR1 -54208 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 2771 chr22 19104198 19105016 + 0 NA intron (NM_005137, intron 1 of 9) intron (NM_005137, intron 1 of 9) 5360 NR_033674 9993 Hs.517357 NM_005137 ENSG00000070413 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 1416 chr14 61695851 61696723 + 0 NA Intergenic Intergenic 52243 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 2256 chr2 50358379 50359223 + 0 NA intron (NM_001135659, intron 19 of 23) intron (NM_001135659, intron 19 of 23) -157460 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1658 chr15 90903733 90904663 + 0 NA exon (NM_001004309, exon 4 of 4) exon (NM_001004309, exon 4 of 4) 8721 NM_001004309 342132 Hs.55307 NM_001004309 ENSG00000196391 ZNF774 - zinc finger protein 774 protein-coding 2057 chr18 67326542 67327257 + 0 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 189732 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 1237 chr13 99723656 99724668 + 0 NA intron (NM_001130049, intron 1 of 32) Tigger2|DNA|TcMar-Tigger 14498 NM_001130049 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 1635 chr15 69988754 69989838 + 0 NA Intergenic Intergenic 104757 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000259641 PCAT29 - prostate cancer associated transcript 29 (non-protein coding) ncRNA 2361 chr2 98950759 98951836 + 0 NA Intergenic Intergenic -11321 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 2490 chr2 179170461 179171368 + 0 NA exon (NM_001201482, exon 3 of 24) exon (NM_001201482, exon 3 of 24) -14057 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 2563 chr2 235612417 235613152 + 0 NA intron (NR_132376, intron 2 of 2) intron (NR_132376, intron 2 of 2) 21472 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 3086 chr4 10356393 10357024 + 0 NA Intergenic MER50B|LTR|ERV1 102324 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 4333 chr8 90003009 90004121 + 0 NA Intergenic Intergenic -663848 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 3991 chr7 76355861 76357099 + 0 NA Intergenic Intergenic -99860 NM_012230 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 4461 chr9 3697816 3699247 + 0 NA Intergenic Intergenic 30445 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 270 chr1 163814798 163815807 + 0 NA Intergenic Intergenic -422321 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 2840 chr3 54455260 54456549 + 0 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 217980 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related (non-protein coding) ncRNA 1602 chr15 57587891 57588680 + 0 NA Intergenic MSTD|LTR|ERVL-MaLR -4278 NR_024433 283663 Hs.181297 NR_024433 ENSG00000247982 LINC00926 - long intergenic non-protein coding RNA 926 ncRNA 4226 chr8 8726943 8727891 + 0 NA intron (NM_004225, intron 1 of 2) intron (NM_004225, intron 1 of 2) 23714 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1 malignant fibrous histiocytoma amplified sequence 1 protein-coding 2007 chr18 43991662 43994170 + 0 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 78729 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 1332 chr14 30969116 30970292 + 0 NA Intergenic Intergenic -58625 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 1399 chr14 59170352 59172369 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 65805 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 740 chr11 101206791 101208298 + 0 NA Intergenic Intergenic 183092 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 1117 chr12 131119337 131120222 + 0 NA Intergenic Intergenic -117369 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 103 chr1 48365623 48367695 + 0 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 95903 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 3434 chr5 123391972 123392961 + 0 NA Intergenic Intergenic 381747 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 871 chr12 16726139 16727122 + 0 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 31683 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 3393 chr5 77312300 77313647 + 0 NA intron (NM_003664, intron 25 of 26) intron (NM_003664, intron 25 of 26) 58902 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 4528 chr9 69710584 69711423 + 0 NA intron (NR_135597, intron 4 of 4).2 ALR/Alpha|Satellite|centr 46781 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 2039 chr18 57339489 57340071 + 0 NA intron (NM_133459, intron 2 of 10) MLT1H|LTR|ERVL-MaLR 24864 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 3826 chr6 150598608 150599531 + 0 NA Intergenic Cheshire|DNA|hAT-Charlie -90959 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 4042 chr7 99617319 99618142 + 0 NA intron (NM_001287054, intron 2 of 7) MIR|SINE|MIR 4555 NM_001287054 7586 Hs.615360 NM_003439 ENSG00000106261 ZKSCAN1 KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33 zinc finger with KRAB and SCAN domains 1 protein-coding 3363 chr5 61988319 61989225 + 0 NA Intergenic Intergenic 114210 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 1219 chr13 95033661 95035412 + 0 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) 97400 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 3774 chr6 118698655 118700070 + 0 NA Intergenic Intergenic -123174 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 2534 chr2 217850172 217851105 + 0 NA Intergenic Intergenic 115143 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 1704 chr16 15055204 15056057 + 0 NA Intergenic AluSx|SINE|Alu -12962 NM_001285447 23042 Hs.370781 NM_015027 ENSG00000179889 PDXDC1 LP8165 pyridoxal dependent decarboxylase domain containing 1 protein-coding 750 chr11 110395873 110397443 + 0 NA Intergenic Intergenic 95997 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 688 chr11 74987235 74988484 + 0 NA intron (NM_020251, intron 10 of 14) intron (NM_020251, intron 10 of 14) 35909 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein-like protein-coding 1749 chr16 53788764 53789764 + 0 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 51389 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 1126 chr13 25989129 25990085 + 0 NA intron (NM_016529, intron 1 of 36) L2a|LINE|L2 43458 NM_016529 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 2128 chr2 2390458 2391012 + 0 NA Intergenic Intergenic -55650 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 3926 chr7 39125965 39126664 + 0 NA intron (NM_001166018, intron 3 of 10) intron (NM_001166018, intron 3 of 10) -73147 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 1534 chr14 90869248 90870515 + 0 NA intron (NM_006888, intron 3 of 5) intron (NM_006888, intron 3 of 5) 6554 NM_006888 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 2570 chr2 237629415 237630541 + 0 NA Intergenic Intergenic 151598 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 1915 chr17 77224082 77224878 + 0 NA intron (NM_001082575, intron 4 of 14) intron (NM_001082575, intron 4 of 14) 153461 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 3729 chr6 97488018 97488744 + 0 NA intron (NM_001286254, intron 1 of 8) MER5A|DNA|hAT-Charlie 30429 NM_001323261 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 4523 chr9 66823370 66824208 + 0 NA Intergenic ALR/Alpha|Satellite|centr -99178 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 2737 chr21 40357698 40358425 + 0 NA Intergenic Intergenic -8361 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 804 chr11 122140964 122143739 + 0 NA intron (NR_137179, intron 2 of 4) intron (NR_137179, intron 2 of 4) 37844 NR_137193 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 83 chr1 37505663 37507065 + 0 NA Intergenic Intergenic -6520 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 3375 chr5 66885440 66886410 + 0 NA Intergenic Intergenic -203116 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 4503 chr9 20742250 20743507 + 0 NA intron (NM_017794, intron 7 of 45) intron (NM_017794, intron 7 of 45) 26774 NR_030166 574444 NR_030166 ENSG00000207609 MIR491 MIRN491|hsa-mir-491|mir-491 microRNA 491 ncRNA 1385 chr14 52313010 52314306 + 0 NA Intergenic Intergenic -13364 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 2672 chr20 56876527 56877381 + 0 NA intron (NR_003505, intron 2 of 16) L2b|LINE|L2 7541 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 4156 chr7 135695558 135696285 + 0 NA Intergenic Intergenic -33717 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 1818 chr17 31458012 31459301 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 138787 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 2094 chr19 38419865 38420649 + 0 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 22396 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 962 chr12 79626848 79627945 + 0 NA intron (NM_001291901, intron 3 of 9) intron (NM_001291901, intron 3 of 9) -185641 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 1837 chr17 34824694 34825460 + 0 NA Intergenic LTR1D|LTR|ERV1 -16985 NM_001001417 414059 Hs.105891 NM_001001417 ENSG00000274808 TBC1D3B PRC17|TBC1D3I|TBC1D3L TBC1 domain family member 3B protein-coding 3778 chr6 119018406 119019532 + 0 NA intron (NM_001178035, intron 1 of 13) ERVL-E-int|LTR|ERVL 12269 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 143 chr1 73530773 73532157 + 0 NA Intergenic Intergenic -240388 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 3090 chr4 16124665 16126397 + 0 NA Intergenic Intergenic -39908 NM_001145848 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 4020 chr7 83920954 83921753 + 0 NA Intergenic Intergenic -97136 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 2323 chr2 79929741 79930558 + 0 NA intron (NM_001282597, intron 2 of 18) intron (NM_001282597, intron 2 of 18) -53664 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 3049 chr3 183095146 183096332 + 0 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 50318 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 2822 chr3 32914019 32915104 + 0 NA intron (NM_001039111, intron 1 of 3) (TCCC)n|Simple_repeat|Simple_repeat 55051 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 1051 chr12 109947417 109948753 + 0 NA intron (NM_183415, intron 16 of 27) intron (NM_183415, intron 16 of 27) 32657 NM_183415 89910 Hs.374067 NM_130466 ENSG00000151148 UBE3B BPIDS|KOS ubiquitin protein ligase E3B protein-coding 3033 chr3 173637628 173638781 + 0 NA intron (NR_046664, intron 1 of 3) intron (NR_046664, intron 1 of 3) 382 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 518 chr10 105308743 105309514 + 0 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -31929 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 2914 chr3 116952773 116953847 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 313032 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 2906 chr3 114618279 114619014 + 0 NA intron (NM_001164343, intron 3 of 11) intron (NM_001164343, intron 3 of 11) 823 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1211 chr13 94050266 94051222 + 0 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 171683 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 3221 chr4 130376461 130377253 + 0 NA Intergenic Intergenic 315776 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LOC101927282 - uncharacterized LOC101927282 ncRNA 2852 chr3 59866328 59867089 + 0 NA intron (NM_002012, intron 8 of 9) intron (NM_002012, intron 8 of 9) 200145 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 2732 chr21 37201310 37201995 + 0 NA Intergenic Intergenic -57091 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 2155 chr2 8176294 8177100 + 0 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -59752 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 2991 chr3 140059907 140061077 + 0 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 167139 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 2399 chr2 129850308 129850997 + 0 NA Intergenic Intergenic 180812 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 1542 chr14 93352423 93353601 + 0 NA Intergenic Intergenic 20815 NR_135253 101929002 Hs.639356 NR_135253 ENSG00000258499 LOC101929002 - uncharacterized LOC101929002 ncRNA 1711 chr16 18952613 18953792 + 0 NA Intergenic MamRep1161|DNA|TcMar -15476 NM_015092 23049 Hs.460179 NM_015092 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1, nonsense mediated mRNA decay associated PI3K related kinase protein-coding 2836 chr3 44072254 44073088 + 0 NA Intergenic Intergenic -83033 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 2102 chr19 47395802 47396566 + 0 NA Intergenic Intergenic -25749 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 3720 chr6 92182679 92183532 + 0 NA Intergenic Intergenic -48273 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 478 chr10 78193052 78193844 + 0 NA intron (NR_131178, intron 7 of 7) intron (NR_131178, intron 7 of 7) -454354 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 3242 chr4 151499821 151500701 + 0 NA intron (NM_006726, intron 41 of 57) intron (NM_006726, intron 41 of 57) -2816 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14 mab-21 like 2 protein-coding 384 chr1 220394924 220395638 + 0 NA intron (NM_012414, intron 2 of 34) intron (NM_012414, intron 2 of 34) -21263 NR_002994 677818 Hs.730572 NR_002994 ENSG00000222370 SNORA36B ACA36b small nucleolar RNA, H/ACA box 36B snoRNA 4052 chr7 107516936 107518067 + 0 NA Intergenic Intergenic -14051 NM_001289750 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 836 chr12 2360692 2361892 + 0 NA intron (NM_001129830, intron 3 of 47) intron (NM_001129830, intron 3 of 47) -17650 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 4028 chr7 90915522 90916361 + 0 NA Intergenic Intergenic 22158 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 3068 chr3 194915373 194916535 + 0 NA intron (NM_152531, intron 2 of 3) intron (NM_152531, intron 2 of 3) 47354 NR_102711 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 3989 chr7 76340897 76341481 + 0 NA Intergenic Intergenic -84569 NM_012230 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 1735 chr16 46454636 46455462 + 0 NA Intergenic HSATII|Satellite|Satellite 147960 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 3512 chr5 155933832 155934467 + 0 NA intron (NM_001128209, intron 2 of 7) MLT1D|LTR|ERVL-MaLR 180382 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 2030 chr18 54942009 54942899 + 0 NA Intergenic Intergenic -77267 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 2286 chr2 60547406 60548483 + 0 NA Intergenic Intergenic 62227 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 1595 chr15 48019676 48020470 + 0 NA intron (NM_153617, intron 1 of 17) X6B_LINE|LINE|CR1 9387 NM_153618 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 1750 chr16 53790467 53791014 + 0 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 52865 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 4715 chrX 117729415 117730195 + 0 NA intron (NM_144658, intron 20 of 52) intron (NM_144658, intron 20 of 52) 99933 NM_144658 139818 Hs.368203 NM_144658 ENSG00000147251 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 1610 chr15 60177865 60179083 + 0 NA Intergenic Intergenic -117947 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 779 chr11 115591000 115592019 + 0 NA Intergenic Intergenic 13971 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 343 chr1 204276525 204277459 + 0 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 52065 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 3910 chr7 29389554 29391068 + 0 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -129017 NM_001293076 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 981 chr12 97432194 97432974 + 0 NA Intergenic Intergenic 131340 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 697 chr11 77809638 77812773 + 0 NA TTS (NM_001007027) TTS (NM_001007027) -19940 NM_004549 4718 Hs.407860 NM_004549 ENSG00000151366 NDUFC2 B14.5b|CI-B14.5b|HLC-1|NADHDH2 NADH:ubiquinone oxidoreductase subunit C2 protein-coding 3001 chr3 154288940 154290297 + 0 NA Intergenic Intergenic -142114 NM_001038705 344758 Hs.688231 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10 G protein-coupled receptor 149 protein-coding 857 chr12 12005645 12006905 + 0 NA intron (NM_001987, intron 3 of 7) intron (NM_001987, intron 3 of 7) 203487 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 1010 chr12 101500813 101501699 + 0 NA intron (NM_001286616, intron 21 of 26) intron (NM_001286616, intron 21 of 26) 102760 NM_145913 160728 Hs.444536 NM_145913 ENSG00000256870 SLC5A8 AIT|SMCT|SMCT1 solute carrier family 5 member 8 protein-coding 707 chr11 79079870 79080866 + 0 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 32785 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 3310 chr5 9903627 9904365 + 0 NA promoter-TSS (NR_027112) promoter-TSS (NR_027112) -60 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 4279 chr8 33971756 33972480 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -514494 NM_024025 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 4077 chr7 114295352 114296425 + 0 NA intron (NR_033766, intron 14 of 19) intron (NR_033766, intron 14 of 19) 2488 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 261 chr1 162983472 162984259 + 0 NA Intergenic L1PBa1|LINE|L1 -54531 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G-protein signaling 4 protein-coding 4083 chr7 116338771 116339472 + 0 NA intron (NM_001324402, intron 1 of 19) intron (NM_001324402, intron 1 of 19) 26677 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 4685 chrX 58560955 58563055 + 0 NA Intergenic ALR/Alpha|Satellite|centr -624938 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 2439 chr2 150467040 150469195 + 0 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -23787 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria and homocystinuria, cblD type protein-coding 3739 chr6 105759014 105759614 + 0 NA intron (NM_002726, intron 10 of 14) L2a|LINE|L2 91685 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 321 chr1 183275342 183276139 + 0 NA intron (NM_015039, intron 1 of 10) intron (NM_015039, intron 1 of 10) -1731 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 3209 chr4 124224706 124226020 + 0 NA intron (NM_001345856, intron 15 of 15) intron (NM_001345856, intron 15 of 15) -92587 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 2896 chr3 107755963 107756997 + 0 NA Intergenic Intergenic 53455 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 1079 chr12 117549191 117550610 + 0 NA intron (NR_120464, intron 2 of 2) intron (NR_120464, intron 2 of 2) 12628 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 2422 chr2 137931996 137932869 + 0 NA intron (NM_001316349, intron 7 of 27) intron (NM_001316349, intron 7 of 27) 409300 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 3407 chr5 96065760 96066919 + 0 NA intron (NM_001284213, intron 5 of 26) intron (NM_001284213, intron 5 of 26) -12905 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 1590 chr15 44213032 44213617 + 0 NA intron (NM_001322951, intron 1 of 14) intron (NM_001322951, intron 1 of 14) -42955 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 1652 chr15 86261830 86262766 + 0 NA intron (NM_001270546, intron 14 of 28) intron (NM_001270546, intron 14 of 28) 39658 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 3980 chr7 69527621 69529200 + 0 NA intron (NM_015570, intron 2 of 18) MIR|SINE|MIR 464505 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 2933 chr3 124058011 124059010 + 0 NA intron (NM_001024660, intron 9 of 59) intron (NM_001024660, intron 9 of 59) -34669 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 760 chr11 112279028 112279826 + 0 NA Intergenic Intergenic -73528 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LOC101928823 - uncharacterized LOC101928823 ncRNA 863 chr12 13751418 13752446 + 0 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -222253 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 531 chr10 122190542 122191372 + 0 NA Intergenic Intergenic -25509 NR_134516 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 2469 chr2 170517521 170518218 + 0 NA intron (NM_001085447, intron 5 of 8) intron (NM_001085447, intron 5 of 8) 33062 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 3317 chr5 14323090 14324057 + 0 NA intron (NM_007118, intron 9 of 56) intron (NM_007118, intron 9 of 56) 179762 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 1745 chr16 52812188 52813976 + 0 NA Intergenic Intergenic -172195 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility candidate 16 (non-protein coding) ncRNA 2594 chr20 7742715 7743701 + 0 NA Intergenic Intergenic 177885 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 3966 chr7 68813679 68814862 + 0 NA Intergenic Intergenic 248211 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 2111 chr2 791836 792839 + 0 NA intron (NR_111963, intron 2 of 2) HSMAR1|DNA|TcMar-Mariner 71775 NR_033880 339822 Hs.651879 NR_033880 ENSG00000237667 LINC01115 - long intergenic non-protein coding RNA 1115 ncRNA 3702 chr6 73889957 73890690 + 0 NA intron (NM_001160133, intron 12 of 14) intron (NM_001160133, intron 12 of 14) -37086 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 2124 chr2 2195665 2196428 + 0 NA intron (NM_001329845, intron 2 of 24) intron (NM_001329845, intron 2 of 24) -126958 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 721 chr11 92590021 92590935 + 0 NA exon (NM_001008781, exon 19 of 25) exon (NM_001008781, exon 19 of 25) 58316 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 1897 chr17 70511926 70512660 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 76650 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 3482 chr5 147122497 147124115 + 0 NA intron (NM_001270941, intron 1 of 21) intron (NM_001270941, intron 1 of 21) 39105 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 669 chr11 51581871 51585391 + 0 NA Intergenic ALR/Alpha|Satellite|centr 68349 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 282 chr1 167706133 167707574 + 0 NA intron (NM_003953, intron 1 of 5) MamRep605|Unknown|Unknown 15666 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 420 chr10 1680999 1681733 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 98304 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase, RNA specific B2 (inactive) protein-coding 3622 chr6 24273473 24274399 + 0 NA intron (NM_016356, intron 7 of 9) intron (NM_016356, intron 7 of 9) -83195 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 989 chr12 97869378 97870664 + 0 NA intron (NR_024037, intron 2 of 8) intron (NR_024037, intron 2 of 8) 11222 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript (non-protein coding) ncRNA 4630 chr9_gl000199_random 30523 32218 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 2372 chr2 107399267 107400394 + 0 NA Intergenic Intergenic 102639 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 1348 chr14 36920175 36922663 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 61571 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 2945 chr3 129223901 129225089 + 0 NA intron (NM_001280546, intron 19 of 27) intron (NM_001280546, intron 19 of 27) -22987 NM_000539 6010 Hs.247565 NM_000539 ENSG00000163914 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 4673 chrX 18093421 18094423 + 0 NA intron (NR_133641, intron 1 of 4) intron (NR_133641, intron 1 of 4) 28842 NR_133641 105373144 NR_133641 ENSG00000225882 LINC01456 - long intergenic non-protein coding RNA 1456 ncRNA 577 chr11 13097216 13098059 + 0 NA Intergenic Intergenic 66667 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 1137 chr13 32562740 32563812 + 0 NA Intergenic L1MA4|LINE|L1 -42161 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 3511 chr5 155813702 155814576 + 0 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 60372 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 3504 chr5 153641570 153642627 + 0 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) 71803 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 3381 chr5 71168823 71169618 + 0 NA Intergenic Intergenic 154230 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 852 chr12 5766306 5767250 + 0 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 163480 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 643 chr11 33916705 33918002 + 0 NA Intergenic Intergenic -3517 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 4341 chr8 93013882 93014611 + 0 NA intron (NM_001198626, intron 7 of 12) intron (NM_001198626, intron 7 of 12) 15662 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding 1120 chr13 22506641 22509178 + 0 NA Intergenic Intergenic -55610 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 1475 chr14 79099733 79100789 + 0 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 230187 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1187 chr13 53733411 53734178 + 0 NA Intergenic Intergenic -7759 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 2968 chr3 134128354 134128964 + 0 NA Intergenic MER82|DNA|TcMar-Tigger -28010 NR_039951 100616281 NR_039951 MIR4788 - microRNA 4788 ncRNA 2092 chr19 33917497 33918520 + 0 NA intron (NM_001166056, intron 7 of 12) intron (NM_001166056, intron 7 of 12) 52578 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT/enhancer binding protein gamma protein-coding 1251 chr13 101941917 101942714 + 0 NA intron (NM_052867, intron 9 of 43) intron (NM_052867, intron 9 of 43) 126498 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 3904 chr7 28256083 28257423 + 0 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -36316 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 2456 chr2 166352876 166354253 + 0 NA intron (NM_001172173, intron 2 of 6) intron (NM_001172173, intron 2 of 6) 27407 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1192 chr13 61368792 61369685 + 0 NA Intergenic Intergenic 122149 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 879 chr12 21869507 21870110 + 0 NA Intergenic L2|LINE|L2 57947 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 3899 chr7 26694559 26695204 + 0 NA Intergenic Intergenic 16177 NM_001302625 285941 Hs.413394 NM_001145531 C7orf71 - chromosome 7 open reading frame 71 protein-coding 3017 chr3 160972732 160973141 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR 33858 NM_001320227 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 1095 chr12 119830601 119832033 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 58800 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 3961 chr7 68235066 68236183 + 0 NA Intergenic Intergenic 750384 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 3104 chr4 24891835 24892986 + 0 NA intron (NM_001330643, intron 1 of 12) intron (NM_001330643, intron 1 of 12) 22190 NM_001330644 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 2975 chr3 134819009 134819811 + 0 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 305311 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1444 chr14 70597062 70597802 + 0 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -50498 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 1883 chr17 55583187 55584019 + 0 NA intron (NM_170721, intron 5 of 9) intron (NM_170721, intron 5 of 9) 17355 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 4691 chrX 61838950 61839723 + 0 NA Intergenic ALR/Alpha|Satellite|centr 731882 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 1846 chr17 39408518 39409332 + 0 NA intron (NM_001318227, intron 1 of 1) intron (NM_001318227, intron 1 of 1) -2711 NM_030975 81870 Hs.722077 NM_030975 ENSG00000198083 KRTAP9-9 KAP9.5|KAP9.9|KRTAP9-5|KRTAP9.9 keratin associated protein 9-9 protein-coding 133 chr1 63363150 63363929 + 0 NA Intergenic Intergenic 113762 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 2600 chr20 9783480 9784655 + 0 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 35620 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 2515 chr2 206637356 206638254 + 0 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 90581 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 4616 chr9 129737678 129738407 + 0 NA intron (NM_001190728, intron 2 of 16) intron (NM_001190728, intron 2 of 16) 13538 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 1828 chr17 32691533 32692655 + 0 NA Intergenic Intergenic -1842 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 2605 chr20 10368326 10369089 + 0 NA Intergenic L2c|LINE|L2 43866 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 56 chr1 24631298 24632191 + 0 NA Intergenic Intergenic -14068 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 3977 chr7 69345348 69346615 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 282076 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 3006 chr3 156141894 156144414 + 0 NA intron (NM_172159, intron 2 of 13) intron (NM_172159, intron 2 of 13) 21571 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 4282 chr8 38627566 38628439 + 0 NA intron (NM_001330521, intron 1 of 12) intron (NM_001330521, intron 1 of 12) -16720 NM_001122824 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 306 chr1 179748499 179749904 + 0 NA intron (NM_001329719, intron 1 of 4) intron (NM_001329719, intron 1 of 4) 36903 NM_001329719 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 70 chr1 33295531 33296761 + 0 NA intron (NM_001256121, intron 5 of 6) intron (NM_001256121, intron 5 of 6) 5232 NR_135107 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 4038 chr7 95744988 95746153 + 0 NA Intergenic Intergenic 103498 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 166 chr1 87269310 87270380 + 0 NA Intergenic HERV9-int|LTR|ERV1 99592 NM_001206653 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like endophilin B1 protein-coding 2225 chr2 40623074 40623854 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 33980 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 1578 chr15 33110771 33111574 + 0 NA intron (NM_001103184, intron 13 of 16) intron (NM_001103184, intron 13 of 16) -100106 NR_109767 100131315 Hs.610545 NR_109767 ENSG00000259721 LOC100131315 - uncharacterized LOC100131315 ncRNA 4352 chr8 94463164 94464255 + 0 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) 248952 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 30 chr1 14468576 14469575 + 0 NA Intergenic Intergenic 393199 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 466 chr10 71604026 71605074 + 0 NA intron (NM_080798, intron 3 of 34) intron (NM_080798, intron 3 of 34) 42906 NM_080805 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 134 chr1 63370441 63371743 + 0 NA Intergenic Intergenic 121315 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 3038 chr3 176447863 176448872 + 0 NA Intergenic Intergenic 86422 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 2151 chr2 7409841 7411397 + 0 NA Intergenic Intergenic -150773 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 618 chr11 22420639 22421563 + 0 NA Intergenic LTR33|LTR|ERVL 61434 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 4732 chrX 151769687 151770873 + 0 NA Intergenic Intergenic -36357 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 3290 chr5 6452947 6453706 + 0 NA intron (NM_001145161, intron 1 of 1) MIRc|SINE|MIR 4590 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 848 chr12 5489011 5490134 + 0 NA Intergenic Intergenic -51708 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 3717 chr6 91521096 91522262 + 0 NA Intergenic Intergenic -224659 NM_003188 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 1904 chr17 71762114 71763040 + 0 NA intron (NR_027146, intron 2 of 3) intron (NR_027146, intron 2 of 3) -20384 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 1761 chr16 67508997 67510617 + 0 NA intron (NM_004691, intron 1 of 7) L1MC5|LINE|L1 5282 NM_004691 9114 Hs.106876 NM_004691 ENSG00000159720 ATP6V0D1 ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD ATPase H+ transporting V0 subunit d1 protein-coding 2196 chr2 29928138 29929208 + 0 NA intron (NM_004304, intron 2 of 28) MIR|SINE|MIR 215804 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 1323 chr14 27416252 27417793 + 0 NA Intergenic MIRc|SINE|MIR 39174 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 1455 chr14 77386196 77387684 + 0 NA Intergenic Intergenic -39041 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 2662 chr20 47565795 47566559 + 0 NA intron (NM_006420, intron 3 of 38) intron (NM_006420, intron 3 of 38) 27902 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 1492 chr14 80126218 80127577 + 0 NA intron (NM_001105250, intron 2 of 6) intron (NM_001105250, intron 2 of 6) 381215 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 4658 chrX 8004346 8005038 + 0 NA Intergenic Intergenic -90314 NR_030380 723779 NR_030380 ENSG00000207628 MIR651 MIRN651|hsa-mir-651|mir-651 microRNA 651 ncRNA 3560 chr6 2732068 2733062 + 0 NA intron (NM_001347872, intron 2 of 12) MIRb|SINE|MIR 18635 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 1134 chr13 31571446 31572395 + 0 NA Intergenic Intergenic 65086 NM_152325 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 3853 chr6 167012146 167013078 + 0 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 28153 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 4455 chr9 2233603 2235144 + 0 NA Intergenic Intergenic 75917 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 4131 chr7 131559976 131561258 + 0 NA Intergenic Intergenic -34362 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 1100 chr12 125204952 125205794 + 0 NA Intergenic Intergenic 143146 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 2861 chr3 63054150 63055311 + 0 NA Intergenic Intergenic -33634 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 1377 chr14 46022799 46023595 + 0 NA Intergenic Intergenic -300592 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 4663 chrX 10940285 10941164 + 0 NA Intergenic L2c|LINE|L2 -88915 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 185 chr1 96941955 96942712 + 0 NA Intergenic Intergenic -102652 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 1719 chr16 23027532 23028233 + 0 NA Intergenic Intergenic 132709 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 2716 chr21 33171186 33171896 + 0 NA Intergenic Intergenic -67110 NM_001145444 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 4 chr1 4853936 4855357 + 0 NA Intergenic Intergenic 139541 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 127 chr1 59536288 59537478 + 0 NA intron (NR_110626, intron 2 of 2) L2b|LINE|L2 50735 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 71 chr1 33792792 33794178 + 0 NA intron (NM_001330488, intron 12 of 12) MLT1F|LTR|ERVL-MaLR 4608 NR_037400 100500853 NR_037400 ENSG00000134686 MIR3605 mir-3605 microRNA 3605 ncRNA 1648 chr15 81865361 81866057 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -199291 NM_001080532 342125 Hs.253489 NM_001080532 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 1481 chr14 79220489 79221444 + 0 NA intron (NM_001330195, intron 8 of 20) intron (NM_001330195, intron 8 of 20) 350892 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 3596 chr6 20699295 20700239 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 165079 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 2927 chr3 122708542 122709614 + 0 NA intron (NR_046079, intron 1 of 22) intron (NR_046079, intron 1 of 22) 3042 NM_001256346 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 2266 chr2 51933288 51933993 + 0 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -664146 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 2915 chr3 117123371 117124252 + 0 NA Intergenic Intergenic 483533 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 4564 chr9 92930051 92930845 + 0 NA Intergenic L1MD2|LINE|L1 -126667 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 512 chr10 100116811 100117662 + 0 NA Intergenic Intergenic 37828 NR_031619 100302133 NR_031619 ENSG00000119943 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 463 chr10 53156963 53157606 + 0 NA intron (NM_006258, intron 2 of 17) intron (NM_006258, intron 2 of 17) 97951 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 517 chr10 104265187 104265870 + 0 NA intron (NM_016169, intron 1 of 11) intron (NM_016169, intron 1 of 11) 1809 NM_016169 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 722 chr11 92594639 92595602 + 0 NA intron (NM_001008781, intron 20 of 24) intron (NM_001008781, intron 20 of 24) 53674 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 1363 chr14 42632315 42633067 + 0 NA Intergenic LTR14B|LTR|ERVK 556632 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 3588 chr6 19534730 19536375 + 0 NA Intergenic Intergenic 85500 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 1109 chr12 129562254 129563503 + 0 NA intron (NM_133448, intron 8 of 8) intron (NM_133448, intron 8 of 8) -31357 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 3051 chr3 183697913 183698752 + 0 NA intron (NM_001320032, intron 8 of 29) L3|LINE|CR1 -25794 NR_046570 100873982 Hs.570696 NR_046570 ENSG00000223882 ABCC5-AS1 - ABCC5 antisense RNA 1 ncRNA 2067 chr18 73346763 73347728 + 0 NA Intergenic Intergenic 77113 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 1597 chr15 48790572 48791690 + 0 NA intron (NM_000138, intron 18 of 65) intron (NM_000138, intron 18 of 65) 146854 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 4060 chr7 107920368 107921109 + 0 NA intron (NM_005010, intron 3 of 27) intron (NM_005010, intron 3 of 27) -40124 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 2154 chr2 7800685 7801489 + 0 NA Intergenic Intergenic 238699 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 4171 chr7 141160236 141161670 + 0 NA intron (NM_001195278, intron 3 of 3) intron (NM_001195278, intron 3 of 3) -90125 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 742 chr11 108983322 108984176 + 0 NA Intergenic Intergenic -309097 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 58 chr1 25440143 25441278 + 0 NA Intergenic Intergenic 90716 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 153 chr1 82851894 82853352 + 0 NA Intergenic Intergenic 586541 NM_012302 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 2932 chr3 123914169 123914916 + 0 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 62766 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 2387 chr2 112999700 113001223 + 0 NA intron (NM_032494, intron 2 of 8) Cheshire|DNA|hAT-Charlie 12203 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 4086 chr7 116711467 116713918 + 0 NA non-coding (NR_109980, exon 4 of 5) non-coding (NR_109980, exon 4 of 5) 18143 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 101 chr1 45499974 45500789 + 0 NA intron (NM_020883, intron 10 of 13) intron (NM_020883, intron 10 of 13) 22576 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 4362 chr8 100235819 100236843 + 0 NA intron (NM_152564, intron 17 of 61) intron (NM_152564, intron 17 of 61) 210837 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 340 chr1 203289755 203291082 + 0 NA Intergenic Intergenic 15754 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 3906 chr7 28611664 28613830 + 0 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -112851 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 3655 chr6 40258845 40259678 + 0 NA Intergenic LTR16C|LTR|ERVL 64484 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 4012 chr7 81964728 81965777 + 0 NA intron (NM_000722, intron 2 of 38) intron (NM_000722, intron 2 of 38) 107870 NM_000722 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 2425 chr2 138281035 138282395 + 0 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 403787 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 3536 chr5 160826854 160828043 + 0 NA intron (NM_021911, intron 6 of 10) intron (NM_021911, intron 6 of 10) 147682 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 - gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 1703 chr16 12991364 12992553 + 0 NA Intergenic Intergenic -3519 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 4671 chrX 17973870 17974520 + 0 NA Intergenic Intergenic -94738 NM_001172739 10742 Hs.446680 NM_021785 ENSG00000131831 RAI2 - retinoic acid induced 2 protein-coding 4519 chr9 38284365 38285357 + 0 NA Intergenic Intergenic -107800 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 4018 chr7 83115603 83116782 + 0 NA intron (NM_001178129, intron 2 of 16) intron (NM_001178129, intron 2 of 16) 154555 NM_001178129 9723 Hs.528721 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 3571 chr6 14382116 14383173 + 0 NA Intergenic Intergenic -96959 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 1172 chr13 47145014 47145888 + 0 NA intron (NM_001164211, intron 1 of 19) intron (NM_001164211, intron 1 of 19) 18155 NM_015116 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 2510 chr2 205129527 205130948 + 0 NA Intergenic Intergenic -280279 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 2458 chr2 166487461 166488499 + 0 NA intron (NM_001172173, intron 4 of 6) intron (NM_001172173, intron 4 of 6) 59134 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 834 chr12 1820863 1822636 + 0 NA intron (NM_024551, intron 1 of 7) HERV9-int|LTR|ERV1 21502 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 285 chr1 168254561 168255057 + 0 NA intron (NM_005149, intron 1 of 7) intron (NM_005149, intron 1 of 7) 4531 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box 19 protein-coding 4397 chr8 123981649 123982686 + 0 NA intron (NM_014943, intron 3 of 3) L3|LINE|CR1 72496 NM_001330601 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 2441 chr2 151208220 151209408 + 0 NA Intergenic Intergenic 135395 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 2414 chr2 136036371 136037415 + 0 NA intron (NM_032143, intron 8 of 20) intron (NM_032143, intron 8 of 20) 227058 NM_001172435 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 1216 chr13 94767004 94767693 + 0 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 72897 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 4657 chrX 7532608 7533281 + 0 NA Intergenic Intergenic -277359 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge, X-linked protein-coding 3879 chr7 18331664 18332953 + 0 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 2593 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 4423 chr8 131423246 131423956 + 0 NA intron (NM_001247996, intron 1 of 30) LTR16C|LTR|ERVL 32305 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 2194 chr2 29698229 29699156 + 0 NA promoter-TSS (NR_136317) promoter-TSS (NR_136317) -449 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 2285 chr2 60488881 60489944 + 0 NA Intergenic Intergenic 120759 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 3092 chr4 17688525 17690175 + 0 NA intron (NM_015688, intron 7 of 17) MLT1C|LTR|ERVL-MaLR 73099 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 1135 chr13 31620777 31621744 + 0 NA Intergenic Intergenic 114426 NM_152325 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 4198 chr7 158630737 158632507 + 0 NA Intergenic Intergenic -9303 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 2864 chr3 65537337 65538290 + 0 NA intron (NM_015520, intron 2 of 24) intron (NM_015520, intron 2 of 24) -341678 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 96 chr1 42401752 42402555 + 0 NA intron (NR_038261, intron 1 of 3) Tigger15a|DNA|TcMar-Tigger -17657 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 1667 chr15 101782305 101782980 + 0 NA intron (NM_014918, intron 1 of 2) intron (NM_014918, intron 1 of 2) 9495 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 3836 chr6 156903357 156904337 + 0 NA Intergenic Intergenic -195142 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 2114 chr2 1014108 1015010 + 0 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -67481 NR_136151 101060391 Hs.120377 NR_136151 LOC101060391 - uncharacterized LOC101060391 ncRNA 569 chr11 12297716 12298963 + 0 NA Intergenic L2b|LINE|L2 -10108 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 4269 chr8 31752646 31753174 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -130342 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 3111 chr4 25791138 25792241 + 0 NA intron (NM_001297594, intron 12 of 23) intron (NM_001297594, intron 12 of 23) 72964 NM_015187 23231 Hs.479384 NM_015187 ENSG00000091490 SEL1L3 Sel-1L3 SEL1L family member 3 protein-coding 1396 chr14 57158594 57159874 + 0 NA Intergenic Intergenic 112723 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101 transmembrane protein 260 protein-coding 1760 chr16 67391212 67391912 + 0 NA intron (NM_018296, intron 5 of 13) LTR16A|LTR|ERVL 10304 NM_001161575 55282 Hs.125139 NM_018296 ENSG00000159708 LRRC36 RORBP70|XLHSRF2 leucine rich repeat containing 36 protein-coding 391 chr1 226910928 226912256 + 0 NA intron (NM_002221, intron 2 of 7) intron (NM_002221, intron 2 of 7) 15284 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 2033 chr18 55582211 55583138 + 0 NA Intergenic Intergenic -112347 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 4335 chr8 90340582 90341603 + 0 NA Intergenic Intergenic 428847 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 2676 chr20 57899493 57900170 + 0 NA 3' UTR (NM_001302456, exon 4 of 4) 3' UTR (NM_001302456, exon 4 of 4) 24349 NM_207032 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 180 chr1 91000274 91001146 + 0 NA Intergenic Intergenic 182084 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 1375 chr14 45181059 45182681 + 0 NA Intergenic Intergenic -184637 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 2907 chr3 115003632 115004485 + 0 NA Intergenic Intergenic -137931 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 4353 chr8 94477525 94478662 + 0 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) 234568 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 4097 chr7 125416889 125417535 + 0 NA Intergenic Intergenic -512867 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 1877 chr17 55128993 55129990 + 0 NA Intergenic Intergenic 6652 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 2939 chr3 125633014 125634430 + 0 NA Intergenic Intergenic -1722 NR_024250 100125556 Hs.553949 NR_024250 ENSG00000171084 FAM86JP - family with sequence similarity 86, member A pseudogene pseudo 246 chr1 153498186 153499193 + 0 NA Intergenic MER61D|LTR|ERV1 10028 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 2227 chr2 42015996 42017012 + 0 NA Intergenic Intergenic -88191 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 4001 chr7 77958074 77958908 + 0 NA intron (NM_001301128, intron 9 of 20) intron (NM_001301128, intron 9 of 20) -18068 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 1168 chr13 44794728 44796415 + 0 NA Intergenic Intergenic -25235 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 3241 chr4 151365206 151366135 + 0 NA intron (NM_006726, intron 45 of 57) intron (NM_006726, intron 45 of 57) -137407 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14 mab-21 like 2 protein-coding 4102 chr7 126217396 126219094 + 0 NA intron (NM_001127323, intron 8 of 10) intron (NM_001127323, intron 8 of 10) 479993 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 4323 chr8 81609935 81611364 + 0 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 176367 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 536 chr10 123413563 123414391 + 0 NA Intergenic Intergenic -56005 NR_073009 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 4661 chrX 10190652 10191575 + 0 NA intron (NM_001830, intron 12 of 12) MER5A|DNA|hAT-Charlie 66128 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49 chloride voltage-gated channel 4 protein-coding 1767 chr16 68454170 68455005 + 0 NA intron (NM_018667, intron 1 of 8) intron (NM_018667, intron 1 of 8) 27822 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 1653 chr15 86286761 86287619 + 0 NA intron (NM_001270546, intron 28 of 28) intron (NM_001270546, intron 28 of 28) 14766 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 2237 chr2 48624472 48625806 + 0 NA Intergenic Intergenic -42769 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 1688 chr16 7506080 7506859 + 0 NA intron (NM_145892, intron 1 of 12) intron (NM_145892, intron 1 of 12) 123718 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 3311 chr5 10213239 10214142 + 0 NA Intergenic Intergenic 36331 NR_047669 134145 Hs.481569 NM_199133 ENSG00000150756 FAM173B JS-2 family with sequence similarity 173 member B protein-coding 1458 chr14 78288388 78289315 + 0 NA exon (NM_001142545, exon 3 of 10) exon (NM_001142545, exon 3 of 10) 22425 NM_020421 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 2958 chr3 131775792 131777195 + 0 NA Intergenic L2b|LINE|L2 -18043 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 444 chr10 31393368 31394527 + 0 NA Intergenic Intergenic -73081 NM_001143767 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 508 chr10 98883131 98884032 + 0 NA intron (NM_003061, intron 4 of 36) intron (NM_003061, intron 4 of 36) 21068 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 1336 chr14 33449686 33451252 + 0 NA intron (NM_173159, intron 1 of 11) intron (NM_173159, intron 1 of 11) 42010 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 4025 chr7 86491022 86492021 + 0 NA intron (NM_000840, intron 5 of 5) L2a|LINE|L2 103770 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 3260 chr4 174185741 174186557 + 0 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) 68771 NM_001130689 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 1089 chr12 119800521 119801531 + 0 NA intron (NM_178499, intron 1 of 13) L1ME3|LINE|L1 28509 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 12 chr1 7196431 7197219 + 0 NA intron (NM_015215, intron 4 of 22) L2|LINE|L2 351441 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 3036 chr3 174411160 174412188 + 0 NA Intergenic Intergenic -165437 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 1554 chr14 99078713 99080283 + 0 NA Intergenic Intergenic -98452 NM_182560 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 2168 chr2 14636840 14637683 + 0 NA Intergenic Intergenic -96179 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 4137 chr7 132139584 132140703 + 0 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 121180 NM_020911 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 3518 chr5 157189272 157190474 + 0 NA Intergenic Intergenic 19170 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 3707 chr6 81041060 81042260 + 0 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 225333 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 3343 chr5 51308885 51310021 + 0 NA Intergenic Intergenic -630287 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 3413 chr5 102981665 102982349 + 0 NA Intergenic Intergenic -83505 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 4036 chr7 95664241 95665100 + 0 NA intron (NM_001278422, intron 11 of 15) intron (NM_001278422, intron 11 of 15) 184398 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 875 chr12 18703727 18704777 + 0 NA intron (NM_004570, intron 25 of 31) intron (NM_004570, intron 25 of 31) 186191 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 1522 chr14 86339309 86340197 + 0 NA Intergenic Intergenic -61269 NR_110155 101928767 Hs.536380 NR_110155 LOC101928767 - uncharacterized LOC101928767 ncRNA 3467 chr5 138543093 138543910 + 0 NA Intergenic Intergenic -9436 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 116 chr1 51612929 51613843 + 0 NA exon (NM_001136508, exon 5 of 5) exon (NM_001136508, exon 5 of 5) 45480 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 136 chr1 67191230 67192066 + 0 NA intron (NM_032291, intron 19 of 24) intron (NM_032291, intron 19 of 24) -26492 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 1197 chr13 74119003 74119412 + 0 NA Intergenic Intergenic -19174 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 4390 chr8 119073232 119073894 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 50495 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 1580 chr15 33212146 33213152 + 0 NA intron (NM_001103184, intron 6 of 16) intron (NM_001103184, intron 6 of 16) 147584 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 3274 chr4 186637101 186638188 + 0 NA intron (NM_001145672, intron 1 of 20) intron (NM_001145672, intron 1 of 20) 59422 NM_001145673 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 2146 chr2 6216981 6218477 + 0 NA Intergenic Intergenic 95619 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 2419 chr2 137164376 137165573 + 0 NA Intergenic Intergenic -289249 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 4604 chr9 125075745 125077265 + 0 NA intron (NR_144421, intron 8 of 8) MLT1H2|LTR|ERVL-MaLR -49362 NR_027125 92400 Hs.415842 NM_033117 ENSG00000119446 RBM18 - RNA binding motif protein 18 protein-coding 308 chr1 180393830 180394756 + 0 NA intron (NM_032360, intron 4 of 7) intron (NM_032360, intron 4 of 7) 13232 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 3485 chr5 148519715 148520427 + 0 NA promoter-TSS (NM_001301028) promoter-TSS (NM_001301028) -939 NM_001301015 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 3802 chr6 126143892 126144537 + 0 NA intron (NM_001199621, intron 2 of 14) intron (NM_001199621, intron 2 of 14) -4210 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 3004 chr3 155222140 155223779 + 0 NA intron (NM_001130961, intron 11 of 23) intron (NM_001130961, intron 11 of 23) 171146 NM_001130961 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 3676 chr6 47174793 47175626 + 0 NA Intergenic Intergenic 102474 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 3939 chr7 51345294 51346918 + 0 NA intron (NM_001287438, intron 1 of 7) AluSx|SINE|Alu 38452 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 3027 chr3 170806475 170807977 + 0 NA intron (NM_001161560, intron 22 of 31) intron (NM_001161560, intron 22 of 31) 17322 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 301 chr1 177819666 177820515 + 0 NA Intergenic Intergenic 118960 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 4686 chrX 58563197 58582019 + 0 NA Intergenic ALR/Alpha|Satellite|centr -635541 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 4272 chr8 31972829 31974863 + 0 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 90112 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 51 chr1 21244407 21245110 + 0 NA intron (NM_001198802, intron 12 of 34) AluJo|SINE|Alu 70167 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 1758 chr16 66368895 66370128 + 0 NA Intergenic Intergenic -30999 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 456 chr10 42408877 42409679 + 0 NA Intergenic ALR/Alpha|Satellite|centr 454215 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1822 chr17 31707437 31708356 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -87890 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 3063 chr3 193488707 193490437 + 0 NA Intergenic Intergenic -144451 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 1033 chr12 106114570 106115598 + 0 NA intron (NR_110109, intron 2 of 4) intron (NR_110109, intron 2 of 4) 14532 NR_110111 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 4059 chr7 107903625 107904664 + 0 NA intron (NM_005010, intron 3 of 27) intron (NM_005010, intron 3 of 27) -23530 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 2736 chr21 40328571 40329453 + 0 NA Intergenic Intergenic -18659 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 2258 chr2 50490524 50491978 + 0 NA intron (NM_001135659, intron 18 of 23) intron (NM_001135659, intron 18 of 23) 83641 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1539 chr14 91879619 91880419 + 0 NA intron (NM_001080414, intron 2 of 29) intron (NM_001080414, intron 2 of 29) 4169 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 796 chr11 121384569 121386062 + 0 NA intron (NM_003105, intron 8 of 47) intron (NM_003105, intron 8 of 47) 62403 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 2349 chr2 92299316 92301379 + 0 NA Intergenic ALR/Alpha|Satellite|centr 171188 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 366 chr1 208326289 208327818 + 0 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 90612 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 4506 chr9 27398706 27399673 + 0 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -102052 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 1541 chr14 93314786 93316509 + 0 NA Intergenic L1ME4a|LINE|L1 55071 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 3727 chr6 97052206 97053221 + 0 NA exon (NM_020482, exon 4 of 7) exon (NM_020482, exon 4 of 7) 41712 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 3527 chr5 158364373 158365349 + 0 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 161909 NM_001324101 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 2343 chr2 91601633 91606365 + 0 NA Intergenic HSATII|Satellite|Satellite 243976 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 4113 chr7 127602520 127603308 + 0 NA intron (NM_014390, intron 15 of 23) intron (NM_014390, intron 15 of 23) -34648 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 2108 chr19 55970617 55971606 + 0 NA intron (NM_024710, intron 1 of 5) intron (NM_024710, intron 1 of 5) 1938 NM_024710 79763 Hs.467306 NM_024710 ENSG00000063241 ISOC2 - isochorismatase domain containing 2 protein-coding 3044 chr3 177802300 177803635 + 0 NA Intergenic Intergenic 268314 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 888 chr12 29305998 29306909 + 0 NA intron (NM_001271783, intron 1 of 11) L2b|LINE|L2 4517 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 3771 chr6 118626670 118627549 + 0 NA intron (NM_001029858, intron 7 of 7) ERVL-B4-int|LTR|ERVL -195427 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 1011 chr12 103420149 103421045 + 0 NA Intergenic LTR16B1|LTR|ERVL 69145 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 3743 chr6 107149818 107151104 + 0 NA Intergenic Intergenic -72095 NM_001318746 84816 Hs.155839 NM_032730 ENSG00000130347 RTN4IP1 NIMP|OPA10 reticulon 4 interacting protein 1 protein-coding 4515 chr9 36436470 36437436 + 0 NA Intergenic Intergenic -35758 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 1754 chr16 56219926 56220691 + 0 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 4698 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 3683 chr6 52414092 52414929 + 0 NA intron (NM_012288, intron 1 of 10) intron (NM_012288, intron 1 of 10) 27352 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 1161 chr13 43848338 43849503 + 0 NA intron (NM_017993, intron 12 of 16) intron (NM_017993, intron 12 of 16) 161619 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 2093 chr19 34789808 34790738 + 0 NA intron (NM_014686, intron 1 of 13) intron (NM_014686, intron 1 of 13) 44817 NM_014686 9710 Hs.330073 NM_014686 ENSG00000166398 KIAA0355 - KIAA0355 protein-coding 1927 chr18 3726174 3727365 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 118589 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1380 chr14 51531741 51532506 + 0 NA intron (NM_052978, intron 1 of 6) intron (NM_052978, intron 1 of 6) 30299 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 2853 chr3 59993580 59994675 + 0 NA intron (NM_002012, intron 7 of 9) intron (NM_002012, intron 7 of 9) 72726 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 3406 chr5 95905049 95906340 + 0 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -92047 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 990 chr12 97950768 97951653 + 0 NA Intergenic Intergenic -6380 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 349 chr1 204627976 204628910 + 0 NA intron (NM_201630, intron 1 of 1) intron (NM_201630, intron 1 of 1) 26038 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 1442 chr14 70159370 70160310 + 0 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -73964 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 1614 chr15 60846503 60848615 + 0 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 37148 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 2218 chr2 40435470 40436277 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 221571 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 2316 chr2 74103902 74105012 + 0 NA Intergenic Intergenic -15636 NM_001615 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin, gamma 2, smooth muscle, enteric protein-coding 1743 chr16 52504305 52505049 + 0 NA intron (NM_001080430, intron 1 of 6) intron (NM_001080430, intron 1 of 6) 76129 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 3970 chr7 69179910 69180672 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 116386 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 3364 chr5 62066983 62067814 + 0 NA Intergenic Intergenic 192836 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 4109 chr7 126829713 126830742 + 0 NA intron (NM_001127323, intron 2 of 10) MLT1H|LTR|ERVL-MaLR -24954 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 3251 chr4 166305418 166306977 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) -1197 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 4401 chr8 124676155 124676954 + 0 NA Intergenic Intergenic -11364 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 3205 chr4 119487009 119488169 + 0 NA Intergenic Intergenic -25310 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 1383 chr14 51768557 51769701 + 0 NA Intergenic MER72|LTR|ERV1 -30982 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 137 chr1 67243355 67244557 + 0 NA 3' UTR (NM_152665, exon 5 of 5) 3' UTR (NM_152665, exon 5 of 5) 22986 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 1414 chr14 61669258 61670608 + 0 NA Intergenic Intergenic 78597 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 4504 chr9 21264804 21265984 + 0 NA Intergenic Intergenic 13168 NR_036676 3453 Hs.545842 NR_036676 IFNA22P IFNAP22 interferon alpha 22, pseudogene pseudo 666 chr11 51571431 51574944 + 0 NA Intergenic ALR/Alpha|Satellite|centr 57905 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 3794 chr6 124754400 124755531 + 0 NA intron (NM_153355, intron 3 of 5) intron (NM_153355, intron 3 of 5) 150814 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 860 chr12 12808624 12809561 + 0 NA Intergenic Intergenic 40029 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 1074 chr12 115775383 115776586 + 0 NA Intergenic Intergenic -654015 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 2308 chr2 69443897 69445044 + 0 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 113656 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 3884 chr7 23932696 23933476 + 0 NA Intergenic Intergenic 183141 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 1063 chr12 114618684 114619850 + 0 NA Intergenic Intergenic -215091 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 - RNA binding motif protein 19 protein-coding 1567 chr15 27424821 27425542 + 0 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) -18715 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 1776 chr16 72957698 72958338 + 0 NA intron (NM_001164766, intron 2 of 8) intron (NM_001164766, intron 2 of 8) 124256 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 2565 chr2 236115113 236116123 + 0 NA Intergenic Intergenic 254990 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 2158 chr2 9418988 9419832 + 0 NA intron (NM_001135191, intron 1 of 26) intron (NM_001135191, intron 1 of 26) 72516 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 3047 chr3 182208114 182209603 + 0 NA Intergenic Intergenic -4708 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 2576 chr2 242528883 242530991 + 0 NA intron (NM_015963, intron 5 of 5) intron (NM_015963, intron 5 of 5) 26979 NM_001164356 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|PP238 THAP domain containing 4 protein-coding 2362 chr2 99091319 99091982 + 0 NA intron (NM_001134225, intron 1 of 24) L2c|LINE|L2 30329 NM_001134224 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 3287 chr5 6407769 6408477 + 0 NA Intergenic Intergenic -29484 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 3829 chr6 151293937 151295061 + 0 NA intron (NM_015440, intron 20 of 27) intron (NM_015440, intron 20 of 27) 107030 NM_001242768 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 2796 chr3 158526 159683 + 0 NA Intergenic Intergenic -79175 NM_006614 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 1601 chr15 56825043 56825822 + 0 NA Intergenic Intergenic -68097 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 323 chr1 184822851 184824269 + 0 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) -99519 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 1834 chr17 32741050 32742380 + 0 NA Intergenic Intergenic -51463 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 2142 chr2 5263418 5264257 + 0 NA Intergenic Intergenic -560025 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 545 chr10 132146839 132147532 + 0 NA Intergenic Intergenic 212512 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 2467 chr2 169551081 169552547 + 0 NA intron (NM_203463, intron 6 of 9) intron (NM_203463, intron 6 of 9) 91125 NR_045787 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 2733 chr21 38436117 38436948 + 0 NA promoter-TSS (NR_131189) promoter-TSS (NR_131189) -166 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 187 chr1 99645912 99646572 + 0 NA Intergenic Intergenic -83606 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 4625 chr9 134577055 134577947 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 7728 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 2326 chr2 85461627 85462648 + 0 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 21362 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA 1283 chr13 108206650 108207562 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -23510 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 3089 chr4 16096292 16097225 + 0 NA Intergenic LTR8|LTR|ERV1 -11135 NM_001145848 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 212 chr1 115999233 116000436 + 0 NA Intergenic Intergenic -118977 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 3384 chr5 72603492 72604587 + 0 NA Intergenic Intergenic -106251 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 2436 chr2 148436860 148438191 + 0 NA Intergenic Intergenic -164561 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 1331 chr14 30766420 30768192 + 0 NA Intergenic Intergenic -261023 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 4019 chr7 83146012 83147084 + 0 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 124199 NM_001178129 9723 Hs.528721 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 2383 chr2 109891519 109893002 + 0 NA intron (NM_001099289, intron 1 of 9) LFSINE_Vert|SINE|SINE 37821 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 1305 chr13 112309160 112311706 + 0 NA Intergenic Intergenic 62077 NR_135814 105370369 NR_135814 ENSG00000215881 LOC105370369 - uncharacterized LOC105370369 ncRNA 961 chr12 79593510 79594684 + 0 NA intron (NM_001135806, intron 2 of 9) intron (NM_001135806, intron 2 of 9) 154664 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 4539 chr9 78768879 78769667 + 0 NA intron (NM_006200, intron 10 of 20) intron (NM_006200, intron 10 of 20) 240171 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 2686 chr20 60655040 60656773 + 0 NA Intergenic MER63A|DNA|hAT-Blackjack -15040 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 1662 chr15 92109090 92110073 + 0 NA Intergenic Intergenic 103012 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 2882 chr3 99584975 99585859 + 0 NA intron (NR_031662, intron 2 of 4) intron (NR_031662, intron 2 of 4) 9630 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 3234 chr4 140966630 140967585 + 0 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 108126 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind like transcriptional coactivator 3 protein-coding 574 chr11 12863500 12864390 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 147150 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 - long intergenic non-protein coding RNA 958 ncRNA 660 chr11 47128418 47129164 + 0 NA intron (NM_001003678, intron 3 of 8) intron (NM_001003678, intron 3 of 8) 69885 NM_001242832 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 3397 chr5 82331397 82332052 + 0 NA Intergenic Intergenic 28432 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 977 chr12 94926074 94926905 + 0 NA Intergenic Intergenic -29076 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 566 chr11 11631977 11633536 + 0 NA intron (NM_198516, intron 1 of 10) intron (NM_198516, intron 1 of 10) 10805 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 3928 chr7 39547049 39548152 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR -58375 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1D1 C7orf36|GK003 Yae1 domain containing 1 protein-coding 4067 chr7 110240870 110241935 + 0 NA Intergenic Intergenic -489660 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 2765 chr22 16851446 16852441 + 0 NA Intergenic HSATII|Satellite|Satellite 221757 NM_014406 150160 Hs.128342 NM_014406 ENSG00000198445 CCT8L2 CESK1 chaperonin containing TCP1 subunit 8 like 2 protein-coding 2299 chr2 66478444 66480085 + 0 NA Intergenic Intergenic 106196 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 108 chr1 48991660 48992497 + 0 NA Intergenic MIRb|SINE|MIR -54198 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 2820 chr3 30565644 30566284 + 0 NA Intergenic Intergenic -82030 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 604 chr11 19894898 19895999 + 0 NA intron (NM_182964, intron 4 of 37) intron (NM_182964, intron 4 of 37) -113819 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 477 chr10 78057388 78058603 + 0 NA intron (NR_131178, intron 6 of 7) intron (NR_131178, intron 6 of 7) 515476 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 C10orf11 CDA017 chromosome 10 open reading frame 11 protein-coding 1338 chr14 36582457 36583746 + 0 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 43468 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 2623 chr20 18647257 18648261 + 0 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) 31593 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 330 chr1 201727475 201728240 + 0 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 18894 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 360 chr1 206723574 206724354 + 0 NA intron (NM_182664, intron 2 of 4) L2b|LINE|L2 -6528 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 1857 chr17 46270867 46272131 + 0 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -37626 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 3416 chr5 103446236 103447184 + 0 NA Intergenic L1MB3|LINE|L1 -548208 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 3160 chr4 79293056 79294253 + 0 NA intron (NM_001166133, intron 23 of 41) intron (NM_001166133, intron 23 of 41) -179088 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 3279 chr5 2303396 2304216 + 0 NA TTS (NR_104616) TTS (NR_104616) 8509 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 2321 chr2 79432160 79433030 + 0 NA Intergenic Intergenic -45715 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 3377 chr5 68712362 68713169 + 0 NA intron (NM_001038603, intron 1 of 6) L2a|LINE|L2 1826 NM_001038603 153562 Hs.657687 NM_144724 ENSG00000152939 MARVELD2 DFNB49|MARVD2|MRVLDC2|Tric MARVEL domain containing 2 protein-coding 1076 chr12 116036986 116037769 + 0 NA Intergenic Intergenic 549082 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 3082 chr4 9669419 9670146 + 0 NA Intergenic Intergenic -111845 NR_031688 100302277 NR_031688 ENSG00000221275 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2 microRNA 548i-2 ncRNA 766 chr11 114756327 114757261 + 0 NA Intergenic AluJo|SINE|Alu 207594 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 4595 chr9 118981530 118982782 + 0 NA intron (NM_002581, intron 4 of 21) intron (NM_002581, intron 4 of 21) 66085 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 449 chr10 38816753 38818829 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 100717 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 1574 chr15 29500299 29501086 + 0 NA intron (NM_015307, intron 3 of 10) intron (NM_015307, intron 3 of 10) 61328 NM_138704 56160 Hs.94011 NM_138704 ENSG00000185115 NSMCE3 HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3 NSE3 homolog, SMC5-SMC6 complex component protein-coding 1579 chr15 33118141 33118713 + 0 NA intron (NM_001103184, intron 13 of 16) intron (NM_001103184, intron 13 of 16) -107361 NR_109767 100131315 Hs.610545 NR_109767 ENSG00000259721 LOC100131315 - uncharacterized LOC100131315 ncRNA 3506 chr5 153865656 153866787 + 0 NA Intergenic Intergenic -8397 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 4587 chr9 111606943 111607798 + 0 NA Intergenic Intergenic 10905 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 4484 chr9 9683669 9684752 + 0 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -115182 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 682 chr11 70759511 70761164 + 0 NA intron (NM_012309, intron 7 of 22) intron (NM_012309, intron 7 of 22) -41864 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 353 chr1 205390580 205391523 + 0 NA intron (NR_037583, intron 1 of 3) intron (NR_037583, intron 1 of 3) 163 NM_001199052 93273 Hs.655520 NM_001001552 ENSG00000186007 LEMD1 CT50|LEMP-1 LEM domain containing 1 protein-coding 2971 chr3 134657013 134657880 + 0 NA intron (NM_004441, intron 2 of 15) intron (NM_004441, intron 2 of 15) 143347 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 375 chr1 209629995 209631355 + 0 NA Intergenic Intergenic 25197 NR_029622 406988 NR_029622 ENSG00000230937 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 3633 chr6 35017487 35018691 + 0 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 91098 NM_001261818 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 2989 chr3 139961164 139962241 + 0 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 265929 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 2409 chr2 134559309 134560581 + 0 NA Intergenic Intergenic -233914 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 2833 chr3 41379109 41380288 + 0 NA intron (NR_136342, intron 33 of 34) intron (NR_136342, intron 33 of 34) 138756 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 3944 chr7 61079026 61080658 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1684592 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 4189 chr7 157003229 157004097 + 0 NA intron (NM_014671, intron 13 of 22) intron (NM_014671, intron 13 of 22) 72008 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 3914 chr7 30120257 30120933 + 0 NA 3' UTR (NM_001197026, exon 14 of 14) 3' UTR (NM_001197026, exon 14 of 14) 52618 NM_001197027 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 3692 chr6 61910916 61912175 + 0 NA Intergenic ALR/Alpha|Satellite|centr -372463 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 3726 chr6 96907691 96908532 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -61591 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 501 chr10 93430818 93431913 + 0 NA Intergenic Intergenic -38507 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 2944 chr3 128255417 128256559 + 0 NA Intergenic Intergenic 29310 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 3144 chr4 74140808 74141780 + 0 NA Intergenic Intergenic -16779 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 2650 chr20 39306708 39307584 + 0 NA Intergenic L2c|LINE|L2 10734 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 155 chr1 83674617 83675451 + 0 NA Intergenic Intergenic -223143 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 387 chr1 221700460 221701885 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -191534 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 1913 chr17 76408945 76409983 + 0 NA intron (NR_110601, intron 6 of 8) intron (NR_110601, intron 6 of 8) 34765 NM_024419 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 626 chr11 24025963 24027178 + 0 NA Intergenic Intergenic -491946 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 257 chr1 162308547 162309440 + 0 NA intron (NM_014697, intron 5 of 9) MER129|LTR?|LTR? -3343 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 951 chr12 78139246 78140503 + 0 NA Intergenic Intergenic -85195 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 85 chr1 37538659 37540936 + 0 NA Intergenic Intergenic -39953 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 809 chr11 122628908 122629865 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) -79820 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T-cell molecule protein-coding 1156 chr13 40113194 40114038 + 0 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 63740 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFP - lipoma HMGIC fusion partner protein-coding 2200 chr2 33283743 33284878 + 0 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -75354 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 3057 chr3 187663572 187664465 + 0 NA Intergenic Intergenic 30177 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 3614 chr6 23811902 23812571 + 0 NA Intergenic L1MEc|LINE|L1 -314178 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 736 chr11 94998398 94999515 + 0 NA Intergenic AluJb|SINE|Alu -33251 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 3812 chr6 138509782 138510854 + 0 NA intron (NM_020340, intron 2 of 33) intron (NM_020340, intron 2 of 33) 27265 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 539 chr10 125671252 125672737 + 0 NA Intergenic Intergenic -20494 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 2847 chr3 56951731 56952436 + 0 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) -1584 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 3233 chr4 140926689 140927469 + 0 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 148154 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind like transcriptional coactivator 3 protein-coding 3339 chr5 49984342 49985045 + 0 NA intron (NM_001331028, intron 2 of 25) intron (NM_001331028, intron 2 of 25) 21313 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 4369 chr8 102256047 102258324 + 0 NA Intergenic AluSx3|SINE|Alu -38893 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 520 chr10 111907578 111908444 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -59352 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 1698 chr16 12202760 12203981 + 0 NA intron (NM_032167, intron 11 of 20) MSTC|LTR|ERVL-MaLR 132779 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 2865 chr3 66317197 66318185 + 0 NA intron (NM_001164796, intron 4 of 8) L2c|LINE|L2 46523 NM_001164796 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 4533 chr9 72157558 72158506 + 0 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 129243 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 3820 chr6 148950135 148951003 + 0 NA Intergenic Intergenic -117702 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 4617 chr9 131330641 131331569 + 0 NA exon (NM_001130438, exon 3 of 57) exon (NM_001130438, exon 3 of 57) 16268 NM_001195532 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 57 chr1 24789753 24790792 + 0 NA intron (NM_001330409, intron 11 of 12) intron (NM_001330409, intron 11 of 12) -38569 NM_001251984 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 2642 chr20 31095620 31096645 + 0 NA intron (NM_001256798, intron 4 of 10) intron (NM_001256798, intron 4 of 10) -1630 NR_110619 101929698 Hs.638392 NR_110619 ENSG00000277301 LOC101929698 - uncharacterized LOC101929698 ncRNA 2354 chr2 97736981 97737776 + 0 NA Intergenic Intergenic 23241 NM_001320849 151313 Hs.567723 NM_199336 ENSG00000144199 FAHD2B - fumarylacetoacetate hydrolase domain containing 2B protein-coding 4714 chrX 111444314 111445163 + 0 NA intron (NM_001004308, intron 2 of 2) intron (NM_001004308, intron 2 of 2) 118485 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 ZCCHC16 Mar4|Mart4 zinc finger CCHC-type containing 16 protein-coding 3479 chr5 146027156 146027889 + 0 NA intron (NM_181675, intron 6 of 9) intron (NM_181675, intron 6 of 9) -131846 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding 3790 chr6 124288294 124289813 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 164062 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 3660 chr6 41241155 41242372 + 0 NA 3' UTR (NM_001242590, exon 3 of 3) 3' UTR (NM_001242590, exon 3 of 3) 12720 NM_001242590 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 3435 chr5 123424018 123424753 + 0 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 349828 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 175 chr1 90199098 90199899 + 0 NA Intergenic Intergenic -87075 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family member D protein-coding 584 chr11 15241244 15242159 + 0 NA intron (NM_001278315, intron 6 of 12) intron (NM_001278315, intron 6 of 12) 71053 NM_001278313 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - inscuteable homolog (Drosophila) protein-coding 3307 chr5 9570589 9571240 + 0 NA Intergenic Intergenic 21975 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 35 chr1 16650020 16650821 + 0 NA intron (NM_018994, intron 1 of 9) intron (NM_018994, intron 1 of 9) 28566 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 2453 chr2 160106229 160107376 + 0 NA intron (NM_001330280, intron 8 of 9) intron (NM_001330280, intron 8 of 9) 36261 NM_152528 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 1882 chr17 55565876 55566704 + 0 NA intron (NM_170721, intron 5 of 9) intron (NM_170721, intron 5 of 9) 34668 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 1421 chr14 63658998 63659658 + 0 NA Intergenic Intergenic -11774 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 4033 chr7 95207428 95208509 + 0 NA Intergenic Intergenic 17957 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 665 chr11 51567230 51570521 + 0 NA Intergenic ALR/Alpha|Satellite|centr 53593 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 2827 chr3 37260260 37261447 + 0 NA Intergenic Intergenic -23829 NM_002078 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 3021 chr3 170254372 170255995 + 0 NA intron (NM_020949, intron 1 of 7) MLT1D|LTR|ERVL-MaLR 48680 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 1476 chr14 79103620 79104862 + 0 NA intron (NM_004796, intron 1 of 16) MIRb|SINE|MIR 234167 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2758 chr21 44730708 44731963 + 0 NA Intergenic Intergenic 20584 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 1207 chr13 89430940 89431757 + 0 NA Intergenic Intergenic 152241 NR_047490 100861553 Hs.560132 NR_047490 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 2641 chr20 31094262 31095322 + 0 NA intron (NM_001256798, intron 4 of 10) intron (NM_001256798, intron 4 of 10) -2970 NR_110619 101929698 Hs.638392 NR_110619 ENSG00000277301 LOC101929698 - uncharacterized LOC101929698 ncRNA 2670 chr20 56255008 56255764 + 0 NA intron (NM_199171, intron 1 of 3) MER20|DNA|hAT-Charlie 10294 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 3007 chr3 156235555 156236490 + 0 NA intron (NM_172159, intron 11 of 13) intron (NM_172159, intron 11 of 13) 35892 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 904 chr12 41658333 41658991 + 0 NA intron (NM_001164595, intron 3 of 9) L1PA17|LINE|L1 76412 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 930 chr12 66469441 66470134 + 0 NA Intergenic LTR33B|LTR|ERVL -52281 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 3848 chr6 158826147 158827546 + 0 NA intron (NM_001007466, intron 1 of 12) LTR14B|LTR|ERVK 93154 NM_020245 56995 Hs.486993 NM_020245 ENSG00000130338 TULP4 TUSP tubby like protein 4 protein-coding 2972 chr3 134693106 134694059 + 0 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 179483 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 648 chr11 35506885 35507635 + 0 NA intron (NM_001282675, intron 5 of 12) intron (NM_001282675, intron 5 of 12) 40319 NM_015430 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 2006 chr18 43964866 43965640 + 0 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 51066 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 2245 chr2 49488789 49489593 + 0 NA Intergenic MIR|SINE|MIR -107525 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 3178 chr4 89198549 89199593 + 0 NA intron (NM_152542, intron 2 of 6) intron (NM_152542, intron 2 of 6) 6912 NM_152542 152926 Hs.43744 NM_152542 ENSG00000163644 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding 4453 chr9 512732 513701 + 0 NA intron (NM_015158, intron 1 of 11) intron (NM_015158, intron 1 of 11) 8521 NM_015158 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 2130 chr2 2642522 2644093 + 0 NA Intergenic Intergenic -308222 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 1028 chr12 105599277 105600135 + 0 NA intron (NM_001251905, intron 8 of 20) intron (NM_001251905, intron 8 of 20) 27477 NM_001251905 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 198 chr1 110704333 110705111 + 0 NA intron (NM_001010898, intron 1 of 11) intron (NM_001010898, intron 1 of 11) 11586 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 1589 chr15 43190026 43190841 + 0 NA intron (NM_173500, intron 1 of 14) intron (NM_173500, intron 1 of 14) 22574 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 2550 chr2 227763230 227764219 + 0 NA intron (NM_032276, intron 3 of 6) intron (NM_032276, intron 3 of 6) 63053 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RRP4 rhomboid domain containing 1 protein-coding 1059 chr12 112546824 112547784 + 0 NA promoter-TSS (NM_024953) promoter-TSS (NM_024953) -669 NM_024953 80018 Hs.530941 NM_024953 ENSG00000111300 NAA25 C12orf30|MDM20|NAP1 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding 2683 chr20 59255074 59256212 + 0 NA Intergenic Intergenic 116023 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 3713 chr6 90084865 90085752 + 0 NA intron (NM_021244, intron 5 of 6) intron (NM_021244, intron 5 of 6) -22689 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 3349 chr5 51625807 51626755 + 0 NA Intergenic MLT1A1|LTR|ERVL-MaLR -457493 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 913 chr12 46994580 46995881 + 0 NA intron (NR_125377, intron 3 of 3) L1PA7|LINE|L1 217340 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 3644 chr6 38182901 38183729 + 0 NA intron (NM_001099272, intron 9 of 10) intron (NM_001099272, intron 9 of 10) -266057 NR_144472 101929425 Hs.665280 NR_144472 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 2019 chr18 48339785 48340387 + 0 NA intron (NM_001127174, intron 1 of 5) L1PA15|LINE|L1 6348 NM_001127176 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 3983 chr7 69963072 69964037 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -633969 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 4313 chr8 73192786 73193777 + 0 NA Intergenic HUERS-P3-int|LTR|ERV1 -29412 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 361 chr1 206878023 206879149 + 0 NA intron (NM_032960, intron 1 of 9) intron (NM_032960, intron 1 of 9) 20221 NM_004759 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 mitogen-activated protein kinase-activated protein kinase 2 protein-coding 202 chr1 112446989 112448543 + 0 NA intron (NM_004980, intron 2 of 7) intron (NM_004980, intron 2 of 7) -4513 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 4436 chr8 135762516 135763702 + 0 NA Intergenic L1ME3A|LINE|L1 -37817 NR_110323 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 2468 chr2 169588326 169589057 + 0 NA intron (NM_203463, intron 8 of 9) intron (NM_203463, intron 8 of 9) 54248 NR_045787 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 3282 chr5 2797137 2798013 + 0 NA Intergenic Intergenic 45330 NR_122125 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 1819 chr17 31464243 31465099 + 0 NA intron (NM_001094, intron 1 of 9) LTR16C|LTR|ERVL 144802 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 2183 chr2 25410540 25411240 + 0 NA Intergenic CR1_Mam|LINE|CR1 -16292 NR_132378 106144568 Hs.580474 NR_132378 ENSG00000230452 LINC01381 DADOT long intergenic non-protein coding RNA 1381 ncRNA 1459 chr14 78339123 78340141 + 0 NA intron (NM_020421, intron 4 of 10) intron (NM_020421, intron 4 of 10) 73206 NM_020421 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 1984 chr18 36179139 36180199 + 0 NA Intergenic Intergenic 942571 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 307 chr1 180391307 180392326 + 0 NA intron (NM_032360, intron 4 of 7) Tigger2|DNA|TcMar-Tigger 15709 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 3472 chr5 141113816 141114611 + 0 NA Intergenic Intergenic -52413 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 154 chr1 82976442 82977040 + 0 NA Intergenic Intergenic 473864 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 1463 chr14 78665133 78666997 + 0 NA intron (NM_001330195, intron 1 of 20) intron (NM_001330195, intron 1 of 20) 29349 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1467 chr14 78784402 78785336 + 0 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -85205 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2041 chr18 60039251 60040038 + 0 NA intron (NM_003839, intron 9 of 9) intron (NM_003839, intron 9 of 9) 47124 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 4548 chr9 83578787 83579754 + 0 NA Intergenic Intergenic 725180 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 4324 chr8 81639563 81640370 + 0 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 147050 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 704 chr11 78651119 78652256 + 0 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -365778 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 2801 chr3 4877269 4878098 + 0 NA intron (NM_002222, intron 56 of 57) intron (NM_002222, intron 56 of 57) 70503 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 1462 chr14 78569494 78570633 + 0 NA Intergenic Intergenic -66653 NM_001330195 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 681 chr11 70700139 70701728 + 0 NA intron (NM_012309, intron 8 of 22) intron (NM_012309, intron 8 of 22) -7962 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 4478 chr9 8854053 8855065 + 0 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -3459 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 1029 chr12 105628721 105629441 + 0 NA intron (NM_001251904, intron 1 of 20) intron (NM_001251904, intron 1 of 20) 927 NM_018171 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 3062 chr3 193315937 193316543 + 0 NA intron (NM_130837, intron 1 of 30) L2|LINE|L2 5307 NM_015560 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1, mitochondrial dynamin like GTPase protein-coding 5 chr1 5370931 5372596 + 0 NA Intergenic Intergenic -252368 NR_039612 100616489 NR_039612 ENSG00000264341 MIR4417 mir-4417 microRNA 4417 ncRNA 2715 chr21 22233354 22234320 + 0 NA Intergenic Intergenic -58411 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 2105 chr19 51549946 51550850 + 0 NA Intergenic Intergenic -12250 NM_145895 43849 Hs.411572 NM_019598 ENSG00000186474 KLK12 KLK-L5|KLKL5 kallikrein related peptidase 12 protein-coding 2694 chr21 10795188 10796195 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 195252 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 3292 chr5 6834578 6835237 + 0 NA Intergenic Intergenic -6873 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 3455 chr5 136065366 136066818 + 0 NA Intergenic Intergenic -364928 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 554 chr11 4725000 4726305 + 0 NA Intergenic Intergenic -6576 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 1957 chr18 25625019 25626170 + 0 NA intron (NM_001792, intron 2 of 15) L2c|LINE|L2 -9045 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 552 chr11 3464873 3465865 + 0 NA Intergenic Intergenic -52224 NR_044999 10821 Hs.637689 NR_044999 ENSG00000189398 OR7E12P HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 olfactory receptor family 7 subfamily E member 12 pseudogene pseudo 2657 chr20 44847065 44847752 + 0 NA intron (NM_021248, intron 4 of 11) intron (NM_021248, intron 4 of 11) 89729 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 4006 chr7 79681943 79683465 + 0 NA Intergenic Intergenic -81436 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 3766 chr6 113993660 113995874 + 0 NA Intergenic Intergenic -23490 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 1623 chr15 63662545 63663552 + 0 NA intron (NM_206925, intron 2 of 9) intron (NM_206925, intron 2 of 9) 11261 NM_001293642 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 74 chr1 34756133 34756971 + 0 NA Intergenic L2c|LINE|L2 113999 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 890 chr12 31091819 31092845 + 0 NA intron (NM_001080509, intron 1 of 7) intron (NM_001080509, intron 1 of 7) 12494 NM_001080509 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 3699 chr6 71548240 71549098 + 0 NA intron (NM_001281440, intron 7 of 10) L2a|LINE|L2 118119 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 1926 chr18 3715060 3716943 + 0 NA intron (NM_001308390, intron 4 of 10) AT_rich|Low_complexity|Low_complexity 112266 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 299 chr1 177090649 177092659 + 0 NA intron (NM_207108, intron 1 of 21) intron (NM_207108, intron 1 of 21) 42386 NM_004319 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 2024 chr18 53072910 53074612 + 0 NA intron (NM_001330604, intron 5 of 19) intron (NM_001330604, intron 5 of 19) -2535 NM_001306208 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 1282 chr13 107986779 107987789 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 196312 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 1694 chr16 10047980 10049269 + 0 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 227300 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 1350 chr14 36933563 36935255 + 0 NA Intergenic Intergenic 48581 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 1240 chr13 100394839 100396079 + 0 NA intron (NR_120421, intron 4 of 4) intron (NR_120421, intron 4 of 4) -14204 NR_120383 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 3183 chr4 91516723 91517483 + 0 NA intron (NM_001145065, intron 5 of 10) MER5A|DNA|hAT-Charlie 360921 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 2815 chr3 17120053 17120971 + 0 NA intron (NM_015184, intron 5 of 5) MamRep434|DNA|TcMar-Tigger 145824 NR_037465 100500913 NR_037465 ENSG00000154822 MIR3714 - microRNA 3714 ncRNA 3079 chr4 7228303 7229265 + 0 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 34410 NM_020777 57537 Hs.479099 NM_020777 ENSG00000184985 SORCS2 - sortilin related VPS10 domain containing receptor 2 protein-coding 481 chr10 78758023 78758692 + 0 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 110555 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 867 chr12 16109261 16110629 + 0 NA exon (NM_001300779, exon 2 of 8) exon (NM_001300779, exon 2 of 8) 45839 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 3355 chr5 56332399 56333165 + 0 NA Intergenic Zaphod|DNA|hAT-Tip100 -84825 NM_152622 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 1976 chr18 35087870 35088907 + 0 NA intron (NM_001025087, intron 1 of 12) intron (NM_001025087, intron 1 of 12) -41921 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 3669 chr6 45853728 45854775 + 0 NA Intergenic Intergenic 51083 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 3442 chr5 124661412 124662380 + 0 NA intron (NR_109882, intron 5 of 5) intron (NR_109882, intron 5 of 5) -167058 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 817 chr11 126458473 126459690 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -63592 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 2751 chr21 42462325 42463564 + 0 NA Intergenic L2c|LINE|L2 57047 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 3470 chr5 141094270 141095180 + 0 NA Intergenic L2c|LINE|L2 -32925 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 229 chr1 143928336 143929495 + 0 NA Intergenic Intergenic -14068 NR_144320 728833 Hs.535577 NM_207418 ENSG00000215784 FAM72D GCUD2 family with sequence similarity 72 member D protein-coding 4719 chrX 129960177 129961672 + 0 NA intron (NM_006375, intron 2 of 14) intron (NM_006375, intron 2 of 14) 24314 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 673 chr11 51592037 51593661 + 0 NA Intergenic ALR/Alpha|Satellite|centr 77567 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 3322 chr5 34900332 34901435 + 0 NA TTS (NM_001317949) TTS (NM_001317949) 14848 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 4204 chr8 1513799 1514709 + 0 NA intron (NM_004745, intron 3 of 11) intron (NM_004745, intron 3 of 11) 55576 NR_103863 100507435 Hs.667133 NR_103863 ENSG00000253267 DLGAP2-AS1 - DLGAP2 antisense RNA 1 ncRNA 2059 chr18 67509961 67510838 + 0 NA 3' UTR (NM_152721, exon 8 of 8) 3' UTR (NM_152721, exon 8 of 8) 104690 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 315 chr1 182210356 182211419 + 0 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 72309 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 1827 chr17 32688392 32689255 + 0 NA exon (NM_002981, exon 2 of 3) exon (NM_002981, exon 2 of 3) 1429 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 1947 chr18 18510829 18520535 + 0 NA Intergenic ALR/Alpha|Satellite|centr 176130 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 2366 chr2 100187752 100189546 + 0 NA intron (NM_001025108, intron 17 of 23) intron (NM_001025108, intron 17 of 23) -82131 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 2501 chr2 191726582 191727711 + 0 NA Intergenic THE1C|LTR|ERVL-MaLR -18401 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 1347 chr14 36907236 36909616 + 0 NA Intergenic Intergenic 74564 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 25 chr1 11352262 11353344 + 0 NA intron (NM_001330349, intron 2 of 2) intron (NM_001330349, intron 2 of 2) 19548 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 1504 chr14 81807570 81808375 + 0 NA intron (NM_033104, intron 4 of 5) intron (NM_033104, intron 4 of 5) 85584 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 3350 chr5 51838435 51839388 + 0 NA Intergenic Intergenic -244863 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 3971 chr7 69201147 69202167 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 137752 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 2270 chr2 54808995 54809963 + 0 NA intron (NM_178313, intron 1 of 30) intron (NM_178313, intron 1 of 30) 23948 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 1253 chr13 102409540 102410333 + 0 NA intron (NM_001321944, intron 4 of 5) intron (NM_001321944, intron 4 of 5) 159059 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 2648 chr20 38501782 38502523 + 0 NA Intergenic L2|LINE|L2 -130951 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 3932 chr7 44228665 44229555 + 0 NA promoter-TSS (NM_000162) promoter-TSS (NM_000162) -88 NM_000162 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 1730 chr16 35239291 35240079 + 0 NA Intergenic ALR/Alpha|Satellite|centr 258762 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 FLJ26245 - uncharacterized LOC400533 ncRNA 3784 chr6 124125221 124126956 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 1097 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 4479 chr9 8862939 8863645 + 0 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 5274 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 46 chr1 19090659 19091426 + 0 NA Intergenic Intergenic 95113 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 3623 chr6 24522175 24523178 + 0 NA intron (NM_170740, intron 7 of 10) intron (NM_170740, intron 7 of 10) 27479 NM_170740 7915 Hs.371723 NM_001080 ENSG00000112294 ALDH5A1 SSADH|SSDH aldehyde dehydrogenase 5 family member A1 protein-coding 1316 chr14 25345193 25346665 + 0 NA intron (NM_001304477, intron 2 of 5) intron (NM_001304477, intron 2 of 5) 172277 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 1851 chr17 42897702 42898855 + 0 NA intron (NM_001080383, intron 1 of 2) intron (NM_001080383, intron 1 of 2) 9329 NM_005497 10052 Hs.712052 NM_005497 ENSG00000182963 GJC1 CX45|GJA7 gap junction protein gamma 1 protein-coding 4542 chr9 80210144 80211093 + 0 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 52614 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 3327 chr5 38543060 38544733 + 0 NA intron (NM_002310, intron 1 of 19) L2a|LINE|L2 12852 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 2630 chr20 20222265 20223516 + 0 NA intron (NM_015585, intron 18 of 26) intron (NM_015585, intron 18 of 26) -125875 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 2373 chr2 107813718 107814916 + 0 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 151664 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 2263 chr2 51090260 51091428 + 0 NA intron (NM_001135659, intron 5 of 23) intron (NM_001135659, intron 5 of 23) -167444 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 3386 chr5 72690523 72691702 + 0 NA Intergenic Intergenic 53240 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 4163 chr7 139904641 139905589 + 0 NA Intergenic Intergenic 28054 NR_024451 100134229 Hs.634333 NR_024451 ENSG00000260231 JHDM1D-AS1 - JHDM1D antisense RNA 1 (head to head) ncRNA 3505 chr5 153864410 153865163 + 0 NA Intergenic Intergenic -6962 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 317 chr1 182612577 182613733 + 0 NA 3' UTR (NM_033345, exon 6 of 6) 3' UTR (NM_033345, exon 6 of 6) 28880 NR_036490 284648 Hs.253475 NR_036490 ENSG00000261504 LINC01686 - long intergenic non-protein coding RNA 1686 ncRNA 1254 chr13 102580918 102581820 + 0 NA intron (NM_001321945, intron 2 of 5) intron (NM_001321945, intron 2 of 5) -12374 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 4555 chr9 86064534 86065240 + 0 NA intron (NM_001244959, intron 1 of 14) intron (NM_001244959, intron 1 of 14) 17770 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 1642 chr15 74789447 74790588 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 36411 NR_120377 440288 Hs.611046 NR_038448 ENSG00000247240 UBL7-AS1 - UBL7 antisense RNA 1 (head to head) ncRNA 3712 chr6 90082156 90082961 + 0 NA intron (NM_021244, intron 5 of 6) intron (NM_021244, intron 5 of 6) -19939 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 4622 chr9 134014866 134015836 + 0 NA intron (NM_005085, intron 10 of 35) intron (NM_005085, intron 10 of 35) 14403 NM_001318324 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 892 chr12 31623686 31625531 + 0 NA intron (NM_144973, intron 3 of 20) MER21-int|LTR|ERVL -118249 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 3954 chr7 67497709 67498479 + 0 NA TTS (NR_120514) TTS (NR_120514) 12854 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 546 chr10 132209814 132210481 + 0 NA Intergenic Intergenic 275474 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 2071 chr19 6203423 6204251 + 0 NA Intergenic AluY|SINE|Alu 68193 NM_001289177 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 537 chr10 124107518 124108996 + 0 NA Intergenic Intergenic -25837 NM_001001974 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 1007 chr12 101117680 101118567 + 0 NA Intergenic L2c|LINE|L2 -70251 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 3896 chr7 26458829 26459467 + 0 NA intron (NR_015364, intron 1 of 4) intron (NR_015364, intron 1 of 4) 16040 NR_015364 441204 Hs.587432 NR_015364 LOC441204 - uncharacterized LOC441204 ncRNA 4072 chr7 111678745 111679565 + 0 NA intron (NM_014705, intron 1 of 51) intron (NM_014705, intron 1 of 51) 167307 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 1443 chr14 70547220 70548292 + 0 NA promoter-TSS (NM_001130417) promoter-TSS (NM_001130417) -822 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 4441 chr8 140431903 140432767 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 282964 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1833 chr17 32734753 32735931 + 0 NA Intergenic Intergenic -45090 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 3298 chr5 7887093 7887973 + 0 NA intron (NR_134482, intron 7 of 13) intron (NR_134482, intron 7 of 13) 18316 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 1186 chr13 53334373 53335430 + 0 NA Intergenic Intergenic -20954 NM_001011705 11061 Hs.421391 NM_007015 ENSG00000136110 CNMD BRICD3|CHM-I|CHM1|LECT1|MYETS1 chondromodulin protein-coding 3119 chr4 41430613 41431794 + 0 NA intron (NM_014988, intron 1 of 26) intron (NM_014988, intron 1 of 26) 68555 NM_001289122 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 2240 chr2 48761448 48762126 + 0 NA intron (NM_001198595, intron 2 of 4) AluJo|SINE|Alu 4479 NM_006873 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 3566 chr6 10865271 10866143 + 0 NA Intergenic Intergenic 16391 NM_004752 9247 Hs.227098 NM_004752 ENSG00000124827 GCM2 GCMB|hGCMb glial cells missing homolog 2 protein-coding 529 chr10 121519325 121519904 + 0 NA intron (NM_014937, intron 2 of 19) intron (NM_014937, intron 2 of 19) 34055 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 3556 chr6 484079 484834 + 0 NA TTS (NM_018303) TTS (NM_018303) 92717 NM_002460 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 4309 chr8 72776754 72777761 + 0 NA intron (NR_033652, intron 2 of 4) intron (NR_033652, intron 2 of 4) -20526 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 4222 chr8 6016951 6017832 + 0 NA Intergenic Intergenic 246678 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 2573 chr2 237851867 237852898 + 0 NA Intergenic Intergenic 112428 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 987 chr12 97758257 97759656 + 0 NA Intergenic MIR|SINE|MIR -99843 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript (non-protein coding) ncRNA 2984 chr3 139187012 139188479 + 0 NA intron (NM_004164, intron 1 of 3) intron (NM_004164, intron 1 of 3) 7607 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 1150 chr13 37189903 37191006 + 0 NA Intergenic HSMAR1|DNA|TcMar-Mariner -57595 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 3988 chr7 76311927 76312875 + 0 NA Intergenic LTR16C|LTR|ERVL -55781 NM_012230 22932 Hs.488877 NM_012230 ENSG00000146707 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 4122 chr7 130041674 130042759 + 0 NA intron (NM_001257158, intron 7 of 9) intron (NM_001257158, intron 7 of 9) 22004 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 4347 chr8 93847884 93848794 + 0 NA Intergenic Intergenic -50051 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 4314 chr8 73522060 73522781 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 72794 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 4239 chr8 18904023 18905021 + 0 NA Intergenic Intergenic -33326 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 2390 chr2 122237379 122238710 + 0 NA intron (NM_001142274, intron 8 of 37) intron (NM_001142274, intron 8 of 37) -50412 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 908 chr12 42311724 42314742 + 0 NA Intergenic Intergenic 155242 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LOC101927038 - uncharacterized LOC101927038 ncRNA 2580 chr20 2688449 2689314 + 0 NA intron (NR_138537, intron 6 of 17) intron (NR_138537, intron 6 of 17) 15357 NR_138537 57593 Hs.471955 NM_020833 ENSG00000088881 EBF4 COE4|O/E-4 early B-cell factor 4 protein-coding 4151 chr7 133479073 133480318 + 0 NA intron (NM_021807, intron 10 of 17) L1PA4|LINE|L1 29946 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 284 chr1 168019169 168020297 + 0 NA intron (NM_018442, intron 15 of 19) intron (NM_018442, intron 15 of 19) 51835 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 3127 chr4 53224828 53225476 + 0 NA Intergenic Intergenic 297607 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 247 chr1 154136530 154137138 + 0 NA 3' UTR (NM_152263, exon 10 of 10) 3' UTR (NM_152263, exon 10 of 10) -9242 NM_207308 91181 Hs.67639 NM_207308 ENSG00000143552 NUP210L - nucleoporin 210 like protein-coding 903 chr12 41617071 41617905 + 0 NA intron (NM_001164595, intron 3 of 9) MER76|LTR|ERVL 35238 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 1340 chr14 36663703 36665106 + 0 NA Intergenic MamRep1879|DNA|hAT? -18547 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) ncRNA 3870 chr7 8186582 8187191 + 0 NA intron (NM_004968, intron 8 of 13) intron (NM_004968, intron 8 of 13) 114796 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 4389 chr8 118978521 118980376 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 144610 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 3927 chr7 39130981 39131895 + 0 NA intron (NM_001166018, intron 3 of 10) intron (NM_001166018, intron 3 of 10) -78271 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 289 chr1 170114291 170115476 + 0 NA promoter-TSS (NM_001136107) promoter-TSS (NM_001136107) -305 NM_001136107 149281 Hs.553612 NM_001136107 ENSG00000203740 METTL11B C1orf184|HOMT1B|NTM1B methyltransferase like 11B protein-coding 4739 chrY 13837894 13838978 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 694953 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 4411 chr8 126379500 126380755 + 0 NA TTS (NM_173685) TTS (NM_173685) -62436 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 2119 chr2 1411408 1412304 + 0 NA Intergenic Intergenic -5377 NM_001206744 7173 Hs.467554 NM_000547 ENSG00000115705 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 3891 chr7 25885117 25885920 + 0 NA Intergenic Intergenic 104088 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 808 chr11 122395377 122396091 + 0 NA Intergenic MIRb|SINE|MIR -102155 NR_137179 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 845 chr12 3904130 3905209 + 0 NA Intergenic Intergenic -42303 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 1847 chr17 39589589 39591301 + 0 NA Intergenic Intergenic 7151 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 147 chr1 75146568 75147594 + 0 NA Intergenic Intergenic -7659 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 1249 chr13 101640217 101640935 + 0 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) -43958 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 1142 chr13 33957788 33959178 + 0 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -98582 NM_178006 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 4708 chrX 110591455 110592367 + 0 NA intron (NM_178153, intron 3 of 6) intron (NM_178153, intron 3 of 6) 62463 NM_000555 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 1291 chr13 110279772 110280793 + 0 NA Intergenic Intergenic -100339 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 2095 chr19 38561088 38561860 + 0 NA intron (NM_015073, intron 2 of 21) intron (NM_015073, intron 2 of 21) 153416 NM_001289978 8193 Hs.631576 NM_004647 ENSG00000011332 DPF1 BAF45b|NEUD4|neuro-d4 double PHD fingers 1 protein-coding 2599 chr20 9117733 9118889 + 0 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 68610 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 2601 chr20 10040542 10041557 + 0 NA intron (NR_040710, intron 3 of 4) LTR16A2|LTR|ERVL 25402 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 3227 chr4 140408020 140409008 + 0 NA Intergenic Intergenic 33553 NM_031296 83452 Hs.591679 NM_031296 ENSG00000172007 RAB33B SMC2 RAB33B, member RAS oncogene family protein-coding 2960 chr3 132278949 132280816 + 0 NA intron (NM_032169, intron 18 of 19) intron (NM_032169, intron 18 of 19) -36199 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 1052 chr12 110603188 110604137 + 0 NA intron (NR_144952, intron 12 of 19) MIRc|SINE|MIR 41522 NM_001347948 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1 intraflagellar transport 81 protein-coding 4522 chr9 42878620 42879519 + 0 NA intron (NR_026558, intron 2 of 3) intron (NR_026558, intron 2 of 3) -19984 NR_046175 286297 Hs.645503 NR_046175 LOC286297 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene pseudo 4188 chr7 156849913 156851488 + 0 NA Intergenic Intergenic 47149 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 4250 chr8 22418451 22419516 + 0 NA intron (NM_005775, intron 6 of 20) intron (NM_005775, intron 6 of 20) -4196 NM_001018003 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 1493 chr14 80135010 80135911 + 0 NA intron (NM_138970, intron 3 of 5) intron (NM_138970, intron 3 of 5) 389778 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2397 chr2 129560478 129561389 + 0 NA Intergenic MER4B|LTR|ERV1 -61241 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 4298 chr8 59545569 59546260 + 0 NA intron (NM_003580, intron 5 of 30) L2a|LINE|L2 26052 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 974 chr12 94032061 94033363 + 0 NA Intergenic Intergenic -38435 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 2629 chr20 20192966 20194159 + 0 NA intron (NM_015585, intron 17 of 26) L2a|LINE|L2 -155203 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 1668 chr15 102186184 102186906 + 0 NA intron (NM_078474, intron 4 of 5) L1ME3E|LINE|L1 6049 NM_078474 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 1715 chr16 20034812 20035721 + 0 NA Intergenic MIRb|SINE|MIR 49834 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 1613 chr15 60840173 60841186 + 0 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 44028 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 4247 chr8 21091502 21092358 + 0 NA Intergenic MIR|SINE|MIR -63820 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 636 chr11 27248968 27250520 + 0 NA Intergenic Intergenic -8084 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 1104 chr12 128575292 128577056 + 0 NA intron (NR_104647, intron 3 of 4) intron (NR_104647, intron 3 of 4) 26512 NR_104647 100996679 Hs.539127 NR_104647 ENSG00000256551 LOC100996679 - uncharacterized LOC100996679 ncRNA 1406 chr14 60010520 60011331 + 0 NA intron (NM_001164399, intron 9 of 19) AluSq2|SINE|Alu 32624 NM_001164399 729665 Hs.29706 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 1905 chr17 71881776 71882376 + 0 NA Intergenic Intergenic -57400 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 3203 chr4 114356808 114357513 + 0 NA Intergenic Intergenic 283722 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 117 chr1 51741652 51742397 + 0 NA Intergenic AluJr|SINE|Alu 21609 NM_001297667 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 2207 chr2 37047617 37048818 + 0 NA Intergenic Intergenic 124384 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT - vitrin protein-coding 3754 chr6 110813846 110815294 + 0 NA Intergenic FRAM|SINE|Alu -16726 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 2472 chr2 171958921 171959839 + 0 NA intron (NM_001136554, intron 2 of 20) L2a|LINE|L2 -35897 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 821 chr11 126798734 126800544 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -11003 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 696 chr11 77808567 77809610 + 0 NA Intergenic Intergenic -17823 NM_004549 4718 Hs.407860 NM_004549 ENSG00000151366 NDUFC2 B14.5b|CI-B14.5b|HLC-1|NADHDH2 NADH:ubiquinone oxidoreductase subunit C2 protein-coding 4586 chr9 111560077 111560905 + 0 NA Intergenic MER52-int|LTR|ERV1 57784 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 1721 chr16 23290685 23291915 + 0 NA Intergenic Intergenic -22291 NM_000336 6338 Hs.414614 NM_000336 ENSG00000168447 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel epithelial 1 beta subunit protein-coding 3376 chr5 67829285 67830788 + 0 NA Intergenic Intergenic 241640 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 2179 chr2 23549896 23550781 + 0 NA Intergenic Intergenic -57960 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 2172 chr2 15399378 15400073 + 0 NA intron (NM_015909, intron 44 of 51) MER67B|LTR|ERV1 301747 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1431 chr14 66540943 66541720 + 0 NA Intergenic Intergenic -411758 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 LINC00238 C14orf53|NCRNA00238 long intergenic non-protein coding RNA 238 ncRNA 1489 chr14 79884589 79885370 + 0 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 139297 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 3050 chr3 183693393 183693965 + 0 NA intron (NM_001320032, intron 10 of 29) intron (NM_001320032, intron 10 of 29) -30447 NR_046570 100873982 Hs.570696 NR_046570 ENSG00000223882 ABCC5-AS1 - ABCC5 antisense RNA 1 ncRNA 4565 chr9 93330727 93332071 + 0 NA intron (NR_034157, intron 1 of 5) MLT1J1-int|LTR|ERVL-MaLR 13629 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 1805 chr17 17786862 17787972 + 0 NA intron (NM_001288787, intron 4 of 13) intron (NM_001288787, intron 4 of 13) -47092 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 3226 chr4 139818811 139819839 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 114475 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 1727 chr16 33970694 33973165 + 0 NA Intergenic ALR/Alpha|Satellite|centr -9426 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 2922 chr3 121099080 121099836 + 0 NA intron (NM_014980, intron 22 of 27) intron (NM_014980, intron 22 of 27) 165395 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 2178 chr2 17380516 17381517 + 0 NA Intergenic Intergenic 318690 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 1225 chr13 98212242 98213169 + 0 NA Intergenic Intergenic 126230 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 290 chr1 171052208 171054099 + 0 NA Intergenic Intergenic -6865 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing monooxygenase 3 protein-coding 2909 chr3 115100988 115101849 + 0 NA Intergenic Intergenic -235291 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 210 chr1 115848595 115849497 + 0 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 31811 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 712 chr11 90862388 90863395 + 0 NA Intergenic Intergenic -260521 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 2560 chr2 234897698 234899415 + 0 NA intron (NM_024080, intron 21 of 25) intron (NM_024080, intron 21 of 25) -60790 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 3365 chr5 62273372 62274117 + 0 NA Intergenic Intergenic 399182 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 2702 chr21 17530812 17531915 + 0 NA intron (NR_111005, intron 1 of 6) MARNA|DNA|TcMar-Mariner -22355 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 4529 chr9 70009565 70010267 + 0 NA Intergenic ALR/Alpha|Satellite|centr 168899 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 2593 chr20 7683699 7684895 + 0 NA Intergenic Intergenic 236796 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 3196 chr4 100675431 100676730 + 0 NA Intergenic Intergenic -61901 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 1895 chr17 68672095 68672637 + 0 NA Intergenic Intergenic 506690 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 2920 chr3 117560622 117561410 + 0 NA Intergenic Intergenic -799599 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 2038 chr18 57042765 57043940 + 0 NA Intergenic Intergenic -16844 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 4465 chr9 6547891 6548862 + 0 NA intron (NM_000170, intron 21 of 24) intron (NM_000170, intron 21 of 24) 97316 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 4283 chr8 38646580 38647136 + 0 NA intron (NM_001330521, intron 2 of 12) intron (NM_001330521, intron 2 of 12) 2136 NM_006283 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 3799 chr6 124991773 124992596 + 0 NA intron (NM_001300737, intron 5 of 7) intron (NM_001300737, intron 5 of 7) -291507 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 4399 chr8 124525036 124526070 + 0 NA exon (NM_058229, exon 6 of 9) exon (NM_058229, exon 6 of 9) 18830 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 1159 chr13 42976757 42977931 + 0 NA Intergenic Intergenic -21684 NR_135319 105370177 NR_135319 ENSG00000283554 LOC105370177 - uncharacterized LOC105370177 ncRNA 2048 chr18 62660838 62661597 + 0 NA Intergenic Intergenic -733927 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 4512 chr9 33795157 33796447 + 0 NA intron (NM_002771, intron 1 of 4) intron (NM_002771, intron 1 of 4) 243 NM_002771 5646 Hs.654513 NM_002771 ENSG00000010438 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 protease, serine 3 protein-coding 655 chr11 36471288 36472226 + 0 NA intron (NM_001160169, intron 6 of 6) intron (NM_001160169, intron 6 of 6) 49210 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 3110 chr4 25751910 25753304 + 0 NA intron (NM_001297594, intron 23 of 23) intron (NM_001297594, intron 23 of 23) 94521 NM_001177999 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 421 chr10 3158957 3159638 + 0 NA intron (NM_001345944, intron 14 of 21) intron (NM_001345944, intron 14 of 21) 12496 NM_001323073 5214 Hs.26010 NM_002627 ENSG00000067057 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 2332 chr2 89864910 89866139 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 753640 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 4644 chrUn_gl000216 75112 76639 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 271 chr1 164106423 164107325 + 0 NA Intergenic Intergenic -421723 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 3742 chr6 106703916 106704820 + 0 NA intron (NM_001286111, intron 2 of 4) intron (NM_001286111, intron 2 of 4) 59773 NR_104403 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|hAPG5 autophagy related 5 protein-coding 1024 chr12 105017540 105018339 + 0 NA intron (NM_001173982, intron 2 of 2) intron (NM_001173982, intron 2 of 2) 32528 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 3174 chr4 86747195 86748128 + 0 NA intron (NM_001042669, intron 1 of 7) intron (NM_001042669, intron 1 of 7) -1385 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 2867 chr3 77209735 77210712 + 0 NA intron (NM_001128929, intron 1 of 24) intron (NM_001128929, intron 1 of 24) 63060 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 491 chr10 86305199 86305901 + 0 NA Intergenic L1ME3C|LINE|L1 120612 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 2871 chr3 78448532 78449430 + 0 NA Intergenic Intergenic 619628 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 1863 chr17 48121518 48122295 + 0 NA Intergenic Intergenic 11197 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 4495 chr9 14452284 14453871 + 0 NA Intergenic Intergenic -54095 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 13 chr1 7394000 7395206 + 0 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) -436726 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 3953 chr7 66878412 66879578 + 0 NA Intergenic Intergenic 78032 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000235475 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 4672 chrX 17985843 17987052 + 0 NA Intergenic Intergenic -106990 NM_001172739 10742 Hs.446680 NM_021785 ENSG00000131831 RAI2 - retinoic acid induced 2 protein-coding 1514 chr14 83293875 83294667 + 0 NA Intergenic Charlie1b|DNA|hAT-Charlie -1204866 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 4098 chr7 125567344 125568094 + 0 NA Intergenic Intergenic -663374 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 840 chr12 3479913 3480812 + 0 NA Intergenic Intergenic -10153 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 1647 chr15 81702385 81703242 + 0 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -36395 NM_001080532 342125 Hs.253489 NM_001080532 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 4693 chrX 67268368 67269036 + 0 NA intron (NM_002547, intron 23 of 24) intron (NM_002547, intron 23 of 24) 384597 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 597 chr11 17943361 17943995 + 0 NA intron (NR_104040, intron 9 of 11) intron (NR_104040, intron 9 of 11) 91031 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 4541 chr9 79957823 79959267 + 0 NA intron (NM_001018037, intron 49 of 70) intron (NM_001018037, intron 49 of 70) -104020 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 4372 chr8 103412180 103413386 + 0 NA intron (NM_015902, intron 1 of 58) intron (NM_015902, intron 1 of 58) 12134 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 1411 chr14 61592319 61593251 + 0 NA Intergenic Intergenic 144820 NR_033344 145389 Hs.200738 NM_153811 ENSG00000139974 SLC38A6 NAT-1|SNAT6 solute carrier family 38 member 6 protein-coding 1480 chr14 79217470 79218616 + 0 NA intron (NM_001330195, intron 8 of 20) intron (NM_001330195, intron 8 of 20) 347969 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 3265 chr4 182970275 182971314 + 0 NA Intergenic Intergenic 94874 NR_125905 90768 Hs.175465 NR_027107 LOC90768 - uncharacterized LOC90768 ncRNA 3581 chr6 18206841 18208078 + 0 NA intron (NM_153042, intron 11 of 17) intron (NM_153042, intron 11 of 17) 51840 NM_153042 221656 Hs.709336 NM_153042 ENSG00000165097 KDM1B AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2 lysine demethylase 1B protein-coding 242 chr1 152875052 152875741 + 0 NA Intergenic Intergenic -5643 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 32 chr1 14935078 14935974 + 0 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 10313 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 1588 chr15 40172318 40173836 + 0 NA intron (NM_001271854, intron 1 of 3) L2c|LINE|L2 40016 NM_001271854 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 4138 chr7 132165209 132165997 + 0 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 95720 NM_020911 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 443 chr10 29264709 29265632 + 0 NA Intergenic Intergenic 129833 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 2234 chr2 47444824 47445725 + 0 NA intron (NR_110207, intron 2 of 2) intron (NR_110207, intron 2 of 2) -41199 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 1795 chr16 85091420 85092110 + 0 NA intron (NM_001286566, intron 1 of 11) L4|LINE|RTE -5053 NM_001286565 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 4391 chr8 119144443 119145268 + 0 NA Intergenic Intergenic -20797 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 3519 chr5 157192876 157193807 + 0 NA Intergenic Intergenic 22638 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 3273 chr4 185303060 185303818 + 0 NA promoter-TSS (NR_125933) promoter-TSS (NR_125933) 21 NR_125934 102723766 Hs.432281 NR_125933 ENSG00000249096 LOC102723766 - uncharacterized LOC102723766 ncRNA 846 chr12 5369844 5370632 + 0 NA Intergenic L2c|LINE|L2 -17921 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 1689 chr16 7537362 7538356 + 0 NA intron (NM_145892, intron 1 of 12) intron (NM_145892, intron 1 of 12) 155108 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 1861 chr17 46664747 46665618 + 0 NA Intergenic (CAAAA)n|Simple_repeat|Simple_repeat -2600 NR_033201 404266 Hs.660088 NR_033201 ENSG00000233101 HOXB-AS3 - HOXB cluster antisense RNA 3 ncRNA 3484 chr5 147179072 147179693 + 0 NA Intergenic Intergenic -16971 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 2825 chr3 36099759 36100942 + 0 NA Intergenic L1MC3|LINE|L1 314382 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 1296 chr13 110694708 110695605 + 0 NA Intergenic Intergenic -10476 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 3312 chr5 11305104 11306162 + 0 NA intron (NR_109988, intron 7 of 21) intron (NR_109988, intron 7 of 21) 283396 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1553 chr14 98891612 98892420 + 0 NA Intergenic HAL1|LINE|L1 -285934 NM_182560 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 3415 chr5 103330889 103331621 + 0 NA Intergenic LFSINE_Vert|SINE|SINE -432753 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 2161 chr2 11196252 11198221 + 0 NA Intergenic Intergenic 75066 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 2897 chr3 108106973 108108068 + 0 NA intron (NM_014981, intron 39 of 41) intron (NM_014981, intron 39 of 41) 76888 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 4051 chr7 107487278 107488161 + 0 NA Intergenic Intergenic -43833 NM_001289750 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 1303 chr13 111878003 111879015 + 0 NA intron (NM_001330598, intron 3 of 16) Tigger1|DNA|TcMar-Tigger -14983 NM_001320854 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 4195 chr7 158034587 158035660 + 0 NA intron (NM_001308267, intron 2 of 21) intron (NM_001308267, intron 2 of 21) 290382 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 4738 chrY 13810580 13811550 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 722324 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 1654 chr15 88629646 88630768 + 0 NA intron (NM_001007156, intron 13 of 15) MIR|SINE|MIR 118998 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 3494 chr5 151926527 151927251 + 0 NA Intergenic Intergenic -142049 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 3510 chr5 154919409 154920512 + 0 NA Intergenic Intergenic 526645 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 4638 chrUn_gl000216 3552 5448 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 15 chr1 7787593 7788771 + 0 NA intron (NM_015215, intron 11 of 22) intron (NM_015215, intron 11 of 22) -43147 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 3268 chr4 183416012 183416705 + 0 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 251774 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 4624 chr9 134531376 134532769 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 53157 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 3016 chr3 160637483 160638323 + 0 NA intron (NR_134243, intron 2 of 5) intron (NR_134243, intron 2 of 5) 49517 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 2236 chr2 47951173 47952048 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -58611 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 1506 chr14 81836198 81837669 + 0 NA intron (NM_033104, intron 4 of 5) intron (NM_033104, intron 4 of 5) 56623 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 4026 chr7 87845324 87846366 + 0 NA promoter-TSS (NR_120517) promoter-TSS (NR_120517) -130 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 2855 chr3 60521821 60522807 + 0 NA intron (NM_002012, intron 5 of 9) intron (NM_002012, intron 5 of 9) 81289 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 2145 chr2 6212988 6214241 + 0 NA Intergenic Intergenic 91504 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 859 chr12 12593762 12594487 + 0 NA intron (NM_001330356, intron 2 of 2) intron (NM_001330356, intron 2 of 2) 84111 NM_058169 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 3693 chr6 61912516 61913783 + 0 NA Intergenic ALR/Alpha|Satellite|centr -370859 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 4284 chr8 38653910 38654951 + 0 NA intron (NM_001330521, intron 2 of 12) MLT1F|LTR|ERVL-MaLR 9708 NM_006283 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 739 chr11 101201096 101201892 + 0 NA Intergenic L1PA15|LINE|L1 189142 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 4507 chr9 27817581 27818481 + 0 NA Intergenic Intergenic -244167 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENNL72|FTDALS|FTDALS1 chromosome 9 open reading frame 72 protein-coding 876 chr12 18874347 18875223 + 0 NA intron (NM_001330774, intron 4 of 14) L2a|LINE|L2 15658 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 2890 chr3 105176443 105178082 + 0 NA intron (NM_001243280, intron 1 of 14) L4|LINE|RTE 91705 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 3967 chr7 69103684 69104766 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 40320 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 135 chr1 65459808 65460545 + 0 NA intron (NR_119383, intron 2 of 6) MSTD|LTR|ERVL-MaLR 7983 NR_119383 101927084 Hs.734218 NR_119383 ENSG00000226891 LINC01359 - long intergenic non-protein coding RNA 1359 ncRNA 3344 chr5 51311175 51312286 + 0 NA Intergenic LTR88a|LTR|Gypsy? -632564 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 3913 chr7 30040867 30041984 + 0 NA Intergenic Intergenic -11520 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 4687 chrX 61681988 61693709 + 0 NA Intergenic ALR/Alpha|Satellite|centr 883370 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 145 chr1 74220781 74222329 + 0 NA Intergenic MER21B|LTR|ERVL 442316 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 2674 chr20 57727319 57728133 + 0 NA Intergenic Intergenic -38349 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174|dJ492J12.1 zinc finger protein 831 protein-coding 1131 chr13 26776701 26777881 + 0 NA intron (NM_183045, intron 5 of 5) intron (NM_183045, intron 5 of 5) 18603 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 3624 chr6 24847350 24849175 + 0 NA exon (NM_001286447, exon 12 of 14) exon (NM_001286447, exon 12 of 14) 29331 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 FAM65B C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65 member B protein-coding 772 chr11 115165451 115166308 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -38417 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 1876 chr17 55043371 55044875 + 0 NA Intergenic PABL_A-int|LTR|ERV1 -5712 NM_004645 8161 Hs.532795 NM_004645 ENSG00000121058 COIL CLN80|p80-coilin coilin protein-coding 3803 chr6 127610878 127612238 + 0 NA intron (NM_018479, intron 4 of 4) intron (NM_018479, intron 4 of 4) 23575 NM_001242845 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 1759 chr16 66490591 66491491 + 0 NA intron (NM_001178020, intron 2 of 4) L2b|LINE|L2 19264 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 4514 chr9 35237078 35237834 + 0 NA intron (NM_001330653, intron 4 of 39) intron (NM_001330653, intron 4 of 39) 75467 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 4651 chrUn_gl000225 126815 128366 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 4605 chr9 125881151 125882382 + 0 NA Intergenic Intergenic -4010 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 2032 chr18 55565602 55567155 + 0 NA Intergenic Intergenic -96051 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 3026 chr3 170805314 170806123 + 0 NA intron (NM_001161560, intron 22 of 31) Charlie7|DNA|hAT-Charlie 18830 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 1528 chr14 89745500 89746927 + 0 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 137241 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 653 chr11 36292110 36293183 + 0 NA Intergenic Intergenic 18353 NM_001101653 29099 Hs.279836 NM_014186 ENSG00000110442 COMMD9 HSPC166 COMM domain containing 9 protein-coding 1692 chr16 9022774 9023941 + 0 NA 5' UTR (NM_001286458, exon 3 of 32) 5' UTR (NM_001286458, exon 3 of 32) 7229 NM_001286457 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 2677 chr20 57902936 57903665 + 0 NA Intergenic Intergenic 27818 NM_207032 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 4273 chr8 31978348 31979317 + 0 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 95098 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 3064 chr3 193548325 193549857 + 0 NA Intergenic Intergenic 162936 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 509 chr10 98929491 98930247 + 0 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) 15814 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 3708 chr6 81211091 81211953 + 0 NA Intergenic Tigger2|DNA|TcMar-Tigger 395195 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 1015 chr12 103725505 103726573 + 0 NA intron (NM_001099336, intron 4 of 5) MIRc|SINE|MIR 163749 NR_103526 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 976 chr12 94628536 94630393 + 0 NA intron (NM_005761, intron 9 of 30) MER58B|DNA|hAT-Charlie -26833 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 367 chr1 208328395 208329221 + 0 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 88857 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 1821 chr17 31569201 31570240 + 0 NA intron (NM_001094, intron 1 of 9) Tigger12A|DNA|TcMar-Tigger 50286 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 743 chr11 108994383 108995406 + 0 NA Intergenic Intergenic -297952 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 3589 chr6 19602305 19603170 + 0 NA Intergenic MLT1G3|LTR|ERVL-MaLR 152685 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 2265 chr2 51263794 51264560 + 0 NA intron (NR_135237, intron 1 of 10) intron (NR_135237, intron 1 of 10) 4438 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 2129 chr2 2487472 2488682 + 0 NA Intergenic Intergenic -152992 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 723 chr11 92600995 92602246 + 0 NA intron (NM_001008781, intron 21 of 24) intron (NM_001008781, intron 21 of 24) 47174 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 3597 chr6 20706028 20707775 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 172213 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 1040 chr12 107115608 107116331 + 0 NA intron (NM_032491, intron 9 of 13) intron (NM_032491, intron 9 of 13) -37491 NR_038912 100505978 Hs.662583 NR_038912 ENSG00000257711 LOC100505978 - uncharacterized LOC100505978 ncRNA 1755 chr16 57185795 57187062 + 0 NA TTS (NM_024946) TTS (NM_024946) 33548 NM_024946 80011 Hs.396740 NM_024946 ENSG00000172775 FAM192A C16orf94|CDA018|CDA10|NIP30 family with sequence similarity 192 member A protein-coding 488 chr10 80487293 80487936 + 0 NA Intergenic Intergenic 339591 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 1138 chr13 32578916 32579533 + 0 NA Intergenic Intergenic -26213 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 1012 chr12 103425629 103426655 + 0 NA Intergenic Intergenic 74690 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 2182 chr2 25399656 25400875 + 0 NA Intergenic Intergenic -8545 NM_001319204 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|POC proopiomelanocortin protein-coding 1032 chr12 105803595 105804462 + 0 NA Intergenic Intergenic 79614 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 4071 chr7 111351404 111352254 + 0 NA Intergenic Intergenic -96732 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 152 chr1 82690980 82692238 + 0 NA Intergenic LFSINE_Vert|SINE|SINE 425527 NM_012302 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 342 chr1 203954750 203955363 + 0 NA Intergenic MSTD|LTR|ERVL-MaLR 55336 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 2931 chr3 123864570 123865788 + 0 NA intron (NM_001024660, intron 1 of 59) MER5C|DNA|hAT-Charlie 13403 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 3855 chr6 167873476 167874233 + 0 NA intron (NR_134591, intron 3 of 3) intron (NR_134591, intron 3 of 3) 11159 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 862 chr12 13607595 13608613 + 0 NA Intergenic Intergenic -78425 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 1419 chr14 62106891 62108212 + 0 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -54568 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 341 chr1 203620699 203621514 + 0 NA intron (NM_001684, intron 1 of 20) AluSx1|SINE|Alu 25191 NM_001684 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 3586 chr6 19329780 19330754 + 0 NA Intergenic L2|LINE|L2 -119785 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 2189 chr2 29237775 29239507 + 0 NA intron (NM_001321539, intron 8 of 15) L2a|LINE|L2 34477 NM_199280 165186 Hs.525977 NM_199280 ENSG00000189350 FAM179A - family with sequence similarity 179 member A protein-coding 2883 chr3 99630185 99630927 + 0 NA intron (NR_031662, intron 1 of 4) L2c|LINE|L2 -35509 NM_001282793 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 2287 chr2 60558064 60558858 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 51710 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 2540 chr2 220969362 220970132 + 0 NA Intergenic Intergenic -198461 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 2284 chr2 59394389 59395540 + 0 NA Intergenic Intergenic -49879 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 3793 chr6 124721128 124721991 + 0 NA intron (NM_153355, intron 3 of 5) intron (NM_153355, intron 3 of 5) 117408 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 64 chr1 27633125 27635042 + 0 NA 3' UTR (NM_001276252, exon 16 of 16) 3' UTR (NM_001276252, exon 16 of 16) -14553 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 4085 chr7 116708411 116710318 + 0 NA intron (NM_018412, intron 1 of 14) intron (NM_018412, intron 1 of 14) 21471 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 45 chr1 18861573 18862501 + 0 NA Intergenic Intergenic 54613 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 4426 chr8 131897954 131899323 + 0 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 154197 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 4172 chr7 141240806 141241628 + 0 NA Intergenic Intergenic -9861 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 1173 chr13 47287296 47288141 + 0 NA intron (NM_001164213, intron 15 of 18) intron (NM_001164213, intron 15 of 18) 83649 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 4656 chrX 6067178 6068227 + 0 NA intron (NM_001282145, intron 3 of 6) intron (NM_001282145, intron 3 of 6) -76697 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 309 chr1 181068513 181069374 + 0 NA Intergenic Intergenic 11305 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 1963 chr18 30938743 30939544 + 0 NA intron (NM_198995, intron 6 of 21) intron (NM_198995, intron 6 of 21) 80902 NM_001308126 374864 Hs.115461 NM_198995 ENSG00000166960 CCDC178 C18orf34 coiled-coil domain containing 178 protein-coding 2085 chr19 29907388 29908526 + 0 NA intron (NR_040029, intron 2 of 9) intron (NR_040029, intron 2 of 9) 108702 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 1733 chr16 46416392 46418938 + 0 NA Intergenic HSATII|Satellite|Satellite 185344 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 2113 chr2 942540 943768 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -3400 NM_018968 54221 Hs.595069 NM_018968 ENSG00000172554 SNTG2 G2SYN|SYN5 syntrophin gamma 2 protein-coding 2153 chr2 7799690 7800620 + 0 NA Intergenic Intergenic 238763 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 3383 chr5 71623716 71624557 + 0 NA intron (NM_001284404, intron 3 of 7) MLT1H|LTR|ERVL-MaLR 7942 NM_001284404 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 824 chr11 126975650 126977499 + 0 NA Intergenic Intergenic 39677 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 120 chr1 52440591 52441624 + 0 NA intron (NM_002867, intron 2 of 4) MLT1F|LTR|ERVL-MaLR 15329 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 2568 chr2 236888485 236889730 + 0 NA intron (NM_001037131, intron 13 of 17) intron (NM_001037131, intron 13 of 17) 187545 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 4747 chrY 58989048 58990303 + 0 NA Intergenic BSR/Beta|Satellite|Satellite -110728 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 1148 chr13 37121219 37122639 + 0 NA Intergenic Intergenic 115520 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 254 chr1 162209509 162210743 + 0 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) 83229 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 2386 chr2 112939818 112940750 + 0 NA intron (NM_153214, intron 5 of 7) intron (NM_153214, intron 5 of 7) 44322 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 2841 chr3 54461569 54462407 + 0 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 211896 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related (non-protein coding) ncRNA 1321 chr14 27063130 27064662 + 0 NA intron (NM_006489, intron 2 of 3) intron (NM_006489, intron 2 of 3) 3064 NM_006491 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 4670 chrX 17810771 17811752 + 0 NA Intergenic Intergenic 55692 NM_001037536 6322 Hs.109655 NM_006746 ENSG00000047634 SCML1 - sex comb on midleg-like 1 (Drosophila) protein-coding 4214 chr8 3852238 3853212 + 0 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 999603 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 2442 chr2 151623724 151625084 + 0 NA Intergenic Intergenic 138993 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LOC101929282 - uncharacterized LOC101929282 ncRNA 3945 chr7 61083064 61084143 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1680831 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1987 chr18 37778757 37780100 + 0 NA Intergenic Intergenic 133178 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 2602 chr20 10041941 10043028 + 0 NA intron (NR_040710, intron 3 of 4) LTR16A1|LTR|ERVL 26837 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 3570 chr6 14305671 14306914 + 0 NA Intergenic Intergenic -20607 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 851 chr12 5759635 5760884 + 0 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 156961 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 399 chr1 232075561 232077091 + 0 NA intron (NR_126441, intron 1 of 3) intron (NR_126441, intron 1 of 3) 14746 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 2296 chr2 66225928 66226869 + 0 NA Intergenic Intergenic 359062 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 1811 chr17 27252602 27253643 + 0 NA promoter-TSS (NR_110803) promoter-TSS (NR_110803) -171 NR_110803 101927018 Hs.665702 NR_110803 ENSG00000265845 LOC101927018 - uncharacterized LOC101927018 ncRNA 436 chr10 22688580 22689554 + 0 NA intron (NM_172242, intron 8 of 9) intron (NM_172242, intron 8 of 9) 37791 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 4412 chr8 126455497 126456450 + 0 NA Intergenic Intergenic 11522 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 213 chr1 116047404 116048503 + 0 NA Intergenic Intergenic -136621 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 94 chr1 41714687 41715953 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -7505 NM_001172219 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 sex comb on midleg homolog 1 (Drosophila) protein-coding 1450 chr14 72608717 72609877 + 0 NA intron (NM_001204416, intron 2 of 17) intron (NM_001204416, intron 2 of 17) 209542 NM_001204418 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G-protein signaling 6 protein-coding 3011 chr3 159096079 159097369 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 96289 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 568 chr11 12113965 12114875 + 0 NA Intergenic Intergenic -17703 NM_001346299 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 2668 chr20 50816760 50817448 + 0 NA Intergenic Intergenic -8580 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 2863 chr3 64893523 64894243 + 0 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -220518 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 3098 chr4 22429046 22429711 + 0 NA intron (NM_145290, intron 10 of 18) intron (NM_145290, intron 10 of 18) -88089 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 3250 chr4 157736734 157737608 + 0 NA intron (NM_016205, intron 2 of 5) intron (NM_016205, intron 2 of 5) 155375 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 2411 chr2 135150882 135151611 + 0 NA intron (NM_002410, intron 10 of 15) intron (NM_002410, intron 10 of 15) 139416 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 3905 chr7 28332007 28332939 + 0 NA Intergenic Intergenic -6467 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 4334 chr8 90137025 90138380 + 0 NA Intergenic Charlie25|DNA|hAT-Charlie 632237 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 1129 chr13 26108926 26109938 + 0 NA intron (NM_016529, intron 6 of 36) intron (NM_016529, intron 6 of 36) 66520 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 1143 chr13 34059893 34061013 + 0 NA intron (NM_001243476, intron 4 of 17) intron (NM_001243476, intron 4 of 17) 190519 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 2848 chr3 57711894 57712798 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -30637 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 386 chr1 221482710 221484059 + 0 NA Intergenic Intergenic 26254 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 1961 chr18 30121375 30122613 + 0 NA Intergenic Intergenic 30368 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 1457 chr14 77697241 77698019 + 0 NA intron (NM_020431, intron 6 of 23) intron (NM_020431, intron 6 of 23) -34931 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 200 chr1 110824442 110825624 + 0 NA Intergenic Intergenic 56760 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 LOC440600 - uncharacterized LOC440600 ncRNA 1261 chr13 102749536 102750562 + 0 NA intron (NM_001321945, intron 2 of 5) intron (NM_001321945, intron 2 of 5) -51695 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 1352 chr14 37149396 37150842 + 0 NA intron (NM_030631, intron 9 of 9) intron (NM_030631, intron 9 of 9) 23346 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 4467 chr9 7266776 7268176 + 0 NA Intergenic Intergenic 509835 NM_001304341 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 1621 chr15 63019676 63020642 + 0 NA intron (NM_015059, intron 25 of 55) intron (NM_015059, intron 25 of 55) 80649 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 2970 chr3 134640737 134641602 + 0 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 127070 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 161 chr1 85777370 85778136 + 0 NA Intergenic L1M4b|LINE|L1 -35166 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 109 chr1 49018283 49019381 + 0 NA intron (NM_001323573, intron 11 of 12) intron (NM_001323573, intron 11 of 12) -80952 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 4464 chr9 4019960 4020987 + 0 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 121827 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 2318 chr2 75234525 75235578 + 0 NA Intergenic Intergenic 49276 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 2651 chr20 40074341 40075452 + 0 NA intron (NM_032221, intron 24 of 36) intron (NM_032221, intron 24 of 36) -79398 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 2764 chr22 16849814 16851050 + 0 NA Intergenic HSATII|Satellite|Satellite 223268 NM_014406 150160 Hs.128342 NM_014406 ENSG00000198445 CCT8L2 CESK1 chaperonin containing TCP1 subunit 8 like 2 protein-coding 4526 chr9 67267928 67268748 + 0 NA Intergenic Intergenic 21154 NR_002817 375719 Hs.658215 NR_002817 AQP7P1 bA251O17.3 aquaporin 7 pseudogene 1 pseudo 2797 chr3 288240 288943 + 0 NA non-coding (NR_045572, exon 3 of 3) non-coding (NR_045572, exon 3 of 3) 49265 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 1556 chr14 99187366 99188018 + 0 NA Intergenic Intergenic 9742 NM_001346978 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 3682 chr6 52362257 52363244 + 0 NA 3' UTR (NM_012288, exon 11 of 11) 3' UTR (NM_012288, exon 11 of 11) 76945 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 4593 chr9 117191598 117192648 + 0 NA intron (NM_015404, intron 3 of 11) intron (NM_015404, intron 3 of 11) -3675 NM_001346890 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 1766 chr16 68450429 68451665 + 0 NA intron (NM_018667, intron 1 of 8) LTR16A|LTR|ERVL 31362 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 3378 chr5 68780962 68781918 + 0 NA promoter-TSS (NR_134279) promoter-TSS (NR_134279) -1 NR_134279 101928924 NR_134279 ENSG00000249295 LOC101928924 - uncharacterized LOC101928924 ncRNA 4034 chr7 95423144 95424521 + 0 NA intron (NM_001278422, intron 1 of 15) intron (NM_001278422, intron 1 of 15) 22014 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 3982 chr7 69943190 69944253 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -653802 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 4454 chr9 536960 537642 + 0 NA intron (NM_015158, intron 1 of 11) intron (NM_015158, intron 1 of 11) 32606 NM_015158 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 3153 chr4 77840928 77841979 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -22451 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 911 chr12 45602779 45603917 + 0 NA intron (NR_037144, intron 1 of 2) L1PA16|LINE|L1 -6422 NM_001204803 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 2072 chr19 7179251 7180278 + 0 NA intron (NM_001079817, intron 3 of 20) intron (NM_001079817, intron 3 of 20) 110293 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 3121 chr4 48786203 48787088 + 0 NA Intergenic Intergenic -4329 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 3507 chr5 154678794 154679701 + 0 NA Intergenic Intergenic 285932 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 3427 chr5 115730539 115731938 + 0 NA Intergenic Intergenic -20971 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 2624 chr20 18730949 18731983 + 0 NA intron (NM_080820, intron 5 of 5) intron (NM_080820, intron 5 of 5) 43160 NR_026884 29075 Hs.584899 NM_014162 LINC00652 HSPC072 long intergenic non-protein coding RNA 652 ncRNA 4079 chr7 115192446 115193188 + 0 NA Intergenic Intergenic -321408 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 2965 chr3 133193615 133194999 + 0 NA TTS (NM_003571) TTS (NM_003571) 15683 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 1157 chr13 40342020 40342821 + 0 NA intron (NM_001145079, intron 18 of 18) intron (NM_001145079, intron 18 of 18) -104148 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 1470 chr14 78811458 78812640 + 0 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -58025 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2100 chr19 45606556 45607400 + 0 NA intron (NM_019121, intron 1 of 12) intron (NM_019121, intron 1 of 12) 10547 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 1006 chr12 101099747 101100581 + 0 NA Intergenic Intergenic -88210 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 3813 chr6 138518480 138519236 + 0 NA intron (NM_020340, intron 2 of 33) MIRb|SINE|MIR 20769 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 4531 chr9 71423366 71424118 + 0 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) 28820 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 996 chr12 98578327 98579643 + 0 NA Intergenic Intergenic -189759 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 3005 chr3 156132182 156133048 + 0 NA intron (NM_172159, intron 1 of 13) intron (NM_172159, intron 1 of 13) 32110 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 4596 chr9 119048309 119049309 + 0 NA intron (NM_002581, intron 9 of 21) intron (NM_002581, intron 9 of 21) 114076 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 1840 chr17 35652496 35653406 + 0 NA intron (NM_198838, intron 1 of 54) MER51B|LTR|ERV1 3741 NM_198838 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 3656 chr6 40849809 40850647 + 0 NA intron (NR_110873, intron 5 of 5) intron (NR_110873, intron 5 of 5) 140791 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 2069 chr19 2983364 2984786 + 0 NA intron (NM_024760, intron 4 of 15) intron (NM_024760, intron 4 of 15) 6539 NM_001143986 79816 Hs.334507 NM_024760 ENSG00000104953 TLE6 GRG6|PREMBL transducin like enhancer of split 6 protein-coding 956 chr12 78635033 78635856 + 0 NA Intergenic Intergenic 118082 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LOC105369860 - uncharacterized LOC105369860 ncRNA 3933 chr7 44434211 44435337 + 0 NA intron (NM_015332, intron 4 of 5) Charlie5|DNA|hAT-Charlie -69544 NM_172078 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB calcium/calmodulin dependent protein kinase II beta protein-coding 629 chr11 24456152 24457764 + 0 NA Intergenic Intergenic -61558 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 372 chr1 209203832 209204773 + 0 NA Intergenic Intergenic -294499 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 4525 chr9 66970780 66972499 + 0 NA intron (NR_135597, intron 4 of 4).3 ALR/Alpha|Satellite|centr 48672 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 2951 chr3 130732116 130732636 + 0 NA TTS (NM_001288950) TTS (NM_001288950) -13318 NM_001321222 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 3204 chr4 115145999 115147252 + 0 NA Intergenic Intergenic -245747 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ - arylsulfatase family member J protein-coding 1284 chr13 108226401 108227397 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -43303 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 1330 chr14 30525188 30525970 + 0 NA Intergenic Intergenic -128631 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 1661 chr15 92091493 92092305 + 0 NA Intergenic Intergenic 85330 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 3041 chr3 176645232 176646265 + 0 NA Intergenic Intergenic -110959 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 3526 chr5 158349527 158350294 + 0 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 176860 NM_001324101 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 3772 chr6 118638970 118640408 + 0 NA TTS (NM_001029858) TTS (NM_001029858) -182847 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 1160 chr13 43194633 43195505 + 0 NA Intergenic Intergenic 46778 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf tumor necrosis factor superfamily member 11 protein-coding 869 chr12 16626416 16627428 + 0 NA Intergenic Intergenic 120571 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 1592 chr15 45656355 45657187 + 0 NA intron (NM_001321015, intron 10 of 11) intron (NM_001321015, intron 10 of 11) 14209 NM_001482 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 4114 chr7 127645019 127645718 + 0 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) 7806 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 2997 chr3 148968411 148969021 + 0 NA Intergenic L2a|LINE|L2 -28884 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 1697 chr16 11467926 11468631 + 0 NA Intergenic L1MB2|LINE|L1 28983 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 3828 chr6 150902916 150903866 + 0 NA Intergenic Intergenic -17610 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 1770 chr16 68936017 68936785 + 0 NA exon (NM_024562, exon 9 of 18) exon (NM_024562, exon 9 of 18) 58892 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 4494 chr9 14164767 14166288 + 0 NA intron (NM_001190737, intron 3 of 10) L1MC4|LINE|L1 15274 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 2735 chr21 39905445 39906194 + 0 NA intron (NR_111949, intron 3 of 4) intron (NR_111949, intron 3 of 4) -35391 NM_001331025 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ERG, ETS transcription factor protein-coding 1209 chr13 91214472 91215367 + 0 NA Intergenic MER4C|LTR|ERV1 69377 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 991 chr12 98219328 98220540 + 0 NA Intergenic L2b|LINE|L2 -69639 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 3535 chr5 160811848 160812944 + 0 NA intron (NM_021911, intron 6 of 10) intron (NM_021911, intron 6 of 10) 162734 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 - gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 931 chr12 66531592 66532597 + 0 NA intron (NM_001282610, intron 6 of 6) intron (NM_001282610, intron 6 of 6) -7561 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation protein-coding 2348 chr2 92295190 92298478 + 0 NA Intergenic ALR/Alpha|Satellite|centr 167675 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 615 chr11 21744992 21746366 + 0 NA Intergenic Intergenic -469043 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|TMEM16E anoctamin 5 protein-coding 2246 chr2 49489815 49490611 + 0 NA Intergenic Intergenic -108547 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 476 chr10 77977551 77978214 + 0 NA intron (NR_131178, intron 6 of 7) intron (NR_131178, intron 6 of 7) 435363 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 C10orf11 CDA017 chromosome 10 open reading frame 11 protein-coding 4505 chr9 23717112 23718156 + 0 NA intron (NM_004432, intron 3 of 6) intron (NM_004432, intron 3 of 6) -45237 NR_121602 101929563 Hs.533220 NR_121602 LOC101929563 - uncharacterized LOC101929563 ncRNA 1198 chr13 74129758 74130786 + 0 NA Intergenic Intergenic -8109 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 3319 chr5 26025930 26026619 + 0 NA Intergenic Intergenic 835212 NR_136209 105374693 Hs.628714 NR_136209 LOC105374693 - uncharacterized LOC105374693 ncRNA 3755 chr6 110884720 110885593 + 0 NA Intergenic MIR|SINE|MIR -87312 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 1626 chr15 66246297 66247154 + 0 NA intron (NM_032445, intron 10 of 22) intron (NM_032445, intron 10 of 22) 84928 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 2219 chr2 40466978 40467777 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 190067 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 2141 chr2 5174675 5175624 + 0 NA Intergenic Intergenic -471337 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 1077 chr12 116134632 116135918 + 0 NA Intergenic Intergenic 451184 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 2464 chr2 168366129 168366952 + 0 NA Intergenic L2a|LINE|L2 -308642 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 2854 chr3 60279622 60280523 + 0 NA intron (NM_002012, intron 5 of 9) MIR3|SINE|MIR -213219 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 1299 chr13 111151626 111152973 + 0 NA intron (NM_001846, intron 40 of 47) intron (NM_001846, intron 40 of 47) 8227 NR_046583 100874203 Hs.508716 NR_046583 ENSG00000232814 COL4A2-AS1 - COL4A2 antisense RNA 1 ncRNA 1781 chr16 77483822 77485306 + 0 NA Intergenic Intergenic -15553 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 967 chr12 89352401 89353489 + 0 NA Intergenic Intergenic 60524 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 1611 chr15 60268001 60268714 + 0 NA Intergenic Intergenic -28064 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 2157 chr2 9150855 9151726 + 0 NA Intergenic Intergenic -7411 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 322 chr1 183911819 183912960 + 0 NA intron (NM_001303421, intron 10 of 11) intron (NM_001303421, intron 10 of 11) 94515 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 3046 chr3 178345488 178346547 + 0 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 69529 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 575 chr11 12866824 12868044 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 143661 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 - long intergenic non-protein coding RNA 958 ncRNA 1835 chr17 32755924 32756748 + 0 NA Intergenic L1MB7|LINE|L1 -66084 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 4101 chr7 126210130 126210727 + 0 NA intron (NM_001127323, intron 8 of 10) intron (NM_001127323, intron 8 of 10) 487810 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 3850 chr6 159081259 159082210 + 0 NA intron (NM_001242395, intron 2 of 15) intron (NM_001242395, intron 2 of 15) -2701 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 699 chr11 78064920 78066882 + 0 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) -12975 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 960 chr12 79580246 79581647 + 0 NA intron (NM_001135806, intron 2 of 9) intron (NM_001135806, intron 2 of 9) 141513 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 818 chr11 126693523 126694841 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -116460 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 1038 chr12 106583962 106585665 + 0 NA Intergenic Intergenic -51002 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 2363 chr2 100067210 100068532 + 0 NA non-coding (NR_135650, exon 4 of 23) non-coding (NR_135650, exon 4 of 23) 38647 NM_016316 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 2908 chr3 115040186 115040897 + 0 NA Intergenic Tigger12c|DNA|TcMar-Tigger -174414 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 3088 chr4 16045725 16046474 + 0 NA intron (NM_001145850, intron 1 of 24) intron (NM_001145850, intron 1 of 24) 31642 NM_001145852 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 1777 chr16 73823372 73824145 + 0 NA Intergenic Intergenic 403054 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 354 chr1 205616110 205618444 + 0 NA Intergenic AluY|SINE|Alu -15277 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 4483 chr9 9618775 9619782 + 0 NA intron (NM_002839, intron 7 of 45) L2c|LINE|L2 -180114 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 3878 chr7 18042543 18043411 + 0 NA Intergenic Intergenic 24509 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1-like 1 protein-coding 1064 chr12 114677639 114678586 + 0 NA Intergenic Intergenic 165856 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box 5 protein-coding 4225 chr8 8666764 8667632 + 0 NA intron (NM_004225, intron 1 of 2) intron (NM_004225, intron 1 of 2) 83933 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1 malignant fibrous histiocytoma amplified sequence 1 protein-coding 2734 chr21 38439238 38440607 + 0 NA intron (NM_016430, intron 4 of 5) HAL1|LINE|L1 -3556 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 1217 chr13 94875834 94876700 + 0 NA intron (NM_005708, intron 4 of 8) MER82|DNA|TcMar-Tigger -36022 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 3240 chr4 151306638 151307230 + 0 NA intron (NM_006726, intron 48 of 57) intron (NM_006726, intron 48 of 57) -196143 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14 mab-21 like 2 protein-coding 3288 chr5 6424192 6424960 + 0 NA Intergenic Intergenic -24160 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 2750 chr21 42380816 42382310 + 0 NA Intergenic Intergenic 138428 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 4165 chr7 140812133 140813247 + 0 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 38658 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 2527 chr2 211546024 211546757 + 0 NA Intergenic Intergenic 64095 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 1850 chr17 42065547 42066326 + 0 NA intron (NM_004160, intron 1 of 6) L2c|LINE|L2 15901 NM_004160 5697 Hs.169249 NM_004160 ENSG00000131096 PYY PYY-I|PYY1 peptide YY protein-coding 1346 chr14 36895757 36896806 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 86709 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 1964 chr18 30948993 30951383 + 0 NA intron (NM_198995, intron 5 of 21) intron (NM_198995, intron 5 of 21) 69857 NM_001308126 374864 Hs.115461 NM_198995 ENSG00000166960 CCDC178 C18orf34 coiled-coil domain containing 178 protein-coding 3396 chr5 82329753 82331329 + 0 NA Intergenic Intergenic 29615 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 2818 chr3 29468138 29468818 + 0 NA intron (NM_001003792, intron 1 of 13) MIR|SINE|MIR 145675 NM_001177711 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 2424 chr2 138279138 138280951 + 0 NA intron (NM_001316349, intron 15 of 27) MIRb|SINE|MIR 405458 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 1004 chr12 100768603 100769576 + 0 NA intron (NM_139319, intron 1 of 11) LTR16B2|LTR|ERVL 18232 NM_001145288 246213 Hs.116871 NM_139319 ENSG00000179520 SLC17A8 DFNA25|VGLUT3 solute carrier family 17 member 8 protein-coding 891 chr12 31494896 31495720 + 0 NA Intergenic L2c|LINE|L2 -16149 NM_001135812 58516 Hs.505154 NM_021238 ENSG00000139146 FAM60A C12orf14|L4|TERA family with sequence similarity 60 member A protein-coding 3471 chr5 141111248 141113226 + 0 NA Intergenic Intergenic -50437 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 2106 chr19 53770498 53771372 + 0 NA promoter-TSS (NM_173857) promoter-TSS (NM_173857) -17 NM_173857 317703 Hs.553685 NM_173857 ENSG00000228567 VN1R4 V1RL4 vomeronasal 1 receptor 4 protein-coding 1013 chr12 103662003 103663410 + 0 NA non-coding (NR_103526, exon 8 of 11) non-coding (NR_103526, exon 8 of 11) 117086 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 1693 chr16 9661139 9662229 + 0 NA Intergenic Intergenic -112322 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 316 chr1 182574855 182576080 + 0 NA Intergenic AluSq2|SINE|Alu -1919 NM_002928 6004 Hs.413297 NM_002928 ENSG00000143333 RGS16 A28-RGS14|A28-RGS14P|RGS-R regulator of G-protein signaling 16 protein-coding 4549 chr9 83616468 83617622 + 0 NA Intergenic Intergenic 687405 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 1806 chr17 20105189 20105980 + 0 NA intron (NM_001033555, intron 1 of 12) Tigger2b_Pri|DNA|TcMar-Tigger 46277 NM_001033555 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 4013 chr7 82042349 82043091 + 0 NA intron (NM_000722, intron 1 of 38) intron (NM_000722, intron 1 of 38) 30402 NM_000722 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 1738 chr16 50189250 50190139 + 0 NA intron (NM_001040285, intron 2 of 12) intron (NM_001040285, intron 2 of 12) 2865 NM_001040285 64282 Hs.514342 NM_022447 ENSG00000121274 PAPD5 TRF4-2 poly(A) RNA polymerase D5, non-canonical protein-coding 2025 chr18 53774694 53775867 + 0 NA intron (NR_040026, intron 3 of 8) intron (NR_040026, intron 3 of 8) 29487 NR_040026 100505474 Hs.662191 NR_040025 ENSG00000267712 LINC01539 - long intergenic non-protein coding RNA 1539 ncRNA 1370 chr14 43273094 43274162 + 0 NA Intergenic HERVK22-int|LTR|ERVK 1197569 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 4251 chr8 22745006 22745918 + 0 NA TTS (NR_125433) TTS (NR_125433) 9977 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 3920 chr7 34766880 34767887 + 0 NA intron (NR_015356, intron 3 of 4) intron (NR_015356, intron 3 of 4) 30501 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 2649 chr20 38647973 38648880 + 0 NA Intergenic Intergenic 15323 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 3668 chr6 44825313 44828728 + 0 NA intron (NM_003599, intron 10 of 10) intron (NM_003599, intron 10 of 10) -307402 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 3804 chr6 128428638 128429286 + 0 NA intron (NM_001135648, intron 7 of 30) intron (NM_001135648, intron 7 of 30) 79952 NR_125849 101928140 Hs.656779 NR_125849 LOC101928140 - uncharacterized LOC101928140 ncRNA 511 chr10 99803394 99804004 + 0 NA Intergenic Intergenic -13114 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68 cartilage acidic protein 1 protein-coding 2367 chr2 100995135 100996110 + 0 NA Intergenic Intergenic 38508 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 899 chr12 34841140 34842499 + 0 NA Intergenic ALR/Alpha|Satellite|centr 666603 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 3259 chr4 173926653 173927788 + 0 NA intron (NM_001034845, intron 10 of 12) intron (NM_001034845, intron 10 of 12) -162684 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 3443 chr5 124725568 124726647 + 0 NA Intergenic Intergenic -102847 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 2437 chr2 148504970 148506212 + 0 NA Intergenic L2b|LINE|L2 -96495 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 3573 chr6 14573473 14575114 + 0 NA Intergenic Intergenic -288608 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 2689 chr21 10706259 10707573 + 0 NA Intergenic ALR/Alpha|Satellite|centr 284027 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 3131 chr4 55446917 55447809 + 0 NA Intergenic Tigger4|DNA|TcMar-Tigger 25935 NR_134657 339978 NR_134657 ENSG00000250456 LOC339978 - uncharacterized LOC339978 ncRNA 3765 chr6 112896284 112897300 + 0 NA Intergenic Intergenic 228260 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 4254 chr8 26043846 26044591 + 0 NA Intergenic Intergenic -104789 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2 regulatory subunit Balpha protein-coding 1979 chr18 35535614 35536510 + 0 NA Intergenic Intergenic 298964 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 3066 chr3 193842779 193843846 + 0 NA Intergenic Intergenic -10619 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 2485 chr2 177614987 177616064 + 0 NA Intergenic MIR|SINE|MIR 113043 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 1948 chr18 18747367 18748580 + 0 NA Intergenic Intergenic -56161 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 795 chr11 121306392 121307520 + 0 NA Intergenic MIR|SINE|MIR -15956 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 4402 chr8 124739784 124741062 + 0 NA intron (NM_004306, intron 1 of 10) intron (NM_004306, intron 1 of 10) 9243 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 794 chr11 121236033 121239338 + 0 NA Intergenic Intergenic 74108 NM_001024956 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 1609 chr15 59809142 59809985 + 0 NA intron (NM_152450, intron 8 of 8) L3|LINE|CR1 79191 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 944 chr12 76473722 76474993 + 0 NA intron (NM_001330231, intron 1 of 15) Tigger3c|DNA|TcMar-Tigger 4456 NM_001307924 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 1780 chr16 77271470 77272353 + 0 NA Intergenic L3|LINE|CR1 38562 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 1113 chr12 130034680 130035615 + 0 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 342001 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 LOC101927735 - uncharacterized LOC101927735 ncRNA 674 chr11 61716594 61717510 + 0 NA promoter-TSS (NR_134580) promoter-TSS (NR_134580) -304 NM_001300787 7439 Hs.524910 NM_004183 ENSG00000167995 BEST1 ARB|BEST|BMD|RP50|TU15B|VMD2 bestrophin 1 protein-coding 3405 chr5 95852831 95853581 + 0 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -84221 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 4470 chr9 7874141 7875565 + 0 NA Intergenic Intergenic -75047 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 TMEM261 C9orf123 transmembrane protein 261 protein-coding 1317 chr14 26127810 26130177 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -609490 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 957 chr12 79139461 79140341 + 0 NA Intergenic L1MC3|LINE|L1 -117872 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 2430 chr2 146521875 146522954 + 0 NA Intergenic Intergenic -822211 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 2596 chr20 8311838 8312570 + 0 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 82853 NR_046809 100874337 Hs.662218 NR_046809 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 2943 chr3 127515165 127516285 + 0 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 26000 NM_007283 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 3996 chr7 77622767 77623739 + 0 NA Intergenic AluJo|SINE|Alu 153806 NM_001127357 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 1503 chr14 81735393 81736344 + 0 NA 3' UTR (NM_033104, exon 6 of 6) 3' UTR (NM_033104, exon 6 of 6) -48293 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 4543 chr9 80346116 80346808 + 0 NA intron (NM_002072, intron 5 of 6) intron (NM_002072, intron 5 of 6) -83230 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 2512 chr2 206363233 206364084 + 0 NA intron (NM_152526, intron 19 of 21) L2c|LINE|L2 -183566 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 502 chr10 94479611 94480783 + 0 NA Intergenic Intergenic 30516 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 314 chr1 182198825 182199861 + 0 NA intron (NR_104175, intron 2 of 2) L3|LINE|CR1 83853 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 1286 chr13 108422530 108423484 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 64799 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 1796 chr16 87795633 87796399 + 0 NA intron (NM_017566, intron 1 of 11) intron (NM_017566, intron 1 of 11) 3582 NM_017566 54758 Hs.123450 NM_017566 ENSG00000104731 KLHDC4 - kelch domain containing 4 protein-coding 4744 chrY 13867721 13868814 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 665122 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 3385 chr5 72637655 72638645 + 0 NA Intergenic Intergenic 106202 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 2998 chr3 149790179 149791336 + 0 NA Intergenic Intergenic -23473 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 2638 chr20 29829251 29830147 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -15768 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 355 chr1 205918905 205920786 + 0 NA Intergenic MIR|SINE|MIR -7257 NM_052934 115019 Hs.164073 NM_052934 ENSG00000174502 SLC26A9 - solute carrier family 26 member 9 protein-coding 553 chr11 4706031 4706922 + 0 NA intron (NM_030774, intron 1 of 1) intron (NM_030774, intron 1 of 1) 12600 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 2058 chr18 67341904 67342923 + 0 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 205246 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 3546 chr5 174890426 174891553 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -14512 NM_001322977 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 TCC sideroflexin 1 protein-coding 1252 chr13 102238131 102238952 + 0 NA intron (NM_001271754, intron 5 of 10) intron (NM_001271754, intron 5 of 10) 96238 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 555 chr11 4953584 4954349 + 0 NA Intergenic Intergenic -8397 NM_001005237 79324 Hs.554541 NM_001005237 ENSG00000278870 OR51G1 OR11-29|OR51G3P olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding 2643 chr20 32142571 32143454 + 0 NA intron (NM_001032999, intron 1 of 10) MER57E1|LTR|ERV1 -7159 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 2877 chr3 97554811 97555549 + 0 NA intron (NM_153605, intron 1 of 21) intron (NM_153605, intron 1 of 21) 14296 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 1037 chr12 106545868 106546632 + 0 NA Intergenic Intergenic -12439 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 4164 chr7 140003824 140005387 + 0 NA Intergenic MER113B|DNA|hAT-Charlie 93745 NM_001287498 84255 Hs.446021 NM_032295 ENSG00000157800 SLC37A3 - solute carrier family 37 member 3 protein-coding 3328 chr5 41771394 41772076 + 0 NA intron (NM_000436, intron 13 of 16) intron (NM_000436, intron 13 of 16) -98397 NR_046635 100874002 Hs.375537 NR_046635 ENSG00000248668 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 195 chr1 109423749 109424679 + 0 NA intron (NM_001321038, intron 1 of 14) intron (NM_001321038, intron 1 of 14) 4611 NM_013296 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G-protein signaling modulator 2 protein-coding 2005 chr18 43137472 43138383 + 0 NA intron (NM_001242692, intron 2 of 20) intron (NM_001242692, intron 2 of 20) -50926 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 2828 chr3 37507734 37509096 + 0 NA intron (NM_002207, intron 1 of 27) intron (NM_002207, intron 1 of 27) 14602 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 679 chr11 66442401 66443501 + 0 NA intron (NM_031492, intron 2 of 3) intron (NM_031492, intron 2 of 3) 2441 NM_031492 83759 Hs.618713 NM_031492 ENSG00000173914 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 831 chr11 132365612 132366828 + 0 NA intron (NM_001319104, intron 3 of 6) intron (NM_001319104, intron 3 of 6) 212024 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 1960 chr18 29118519 29119513 + 0 NA intron (NM_001943, intron 12 of 14) intron (NM_001943, intron 12 of 14) 17858 NR_045216 100652770 Hs.562766 NR_045216 ENSG00000264859 DSG2-AS1 - DSG2 antisense RNA 1 ncRNA 2355 chr2 97742655 97743508 + 0 NA Intergenic AluJb|SINE|Alu 17538 NM_001320849 151313 Hs.567723 NM_199336 ENSG00000144199 FAHD2B - fumarylacetoacetate hydrolase domain containing 2B protein-coding 1241 chr13 101051518 101052766 + 0 NA intron (NM_001127692, intron 18 of 22) intron (NM_001127692, intron 18 of 22) 81127 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 647 chr11 35414493 35415237 + 0 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 26240 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 1441 chr14 69827132 69828145 + 0 NA Intergenic Intergenic 37383 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER enhancer of rudimentary homolog (Drosophila) protein-coding 1206 chr13 79657942 79658930 + 0 NA Intergenic Intergenic -244251 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 4368 chr8 102253142 102254082 + 0 NA Intergenic Intergenic -35320 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 1027 chr12 105596821 105597680 + 0 NA intron (NM_001251905, intron 9 of 20) intron (NM_001251905, intron 9 of 20) 29933 NM_001251905 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 423 chr10 5495585 5496749 + 0 NA intron (NM_005863, intron 6 of 9) intron (NM_005863, intron 6 of 9) 7653 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 1953 chr18 22864160 22866658 + 0 NA intron (NM_015461, intron 3 of 7) intron (NM_015461, intron 3 of 7) 66805 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 2757 chr21 44041583 44042650 + 0 NA Intergenic Intergenic -6911 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 1222 chr13 95129667 95130374 + 0 NA intron (NM_001322185, intron 1 of 7) intron (NM_001322185, intron 1 of 7) 1916 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 3473 chr5 141581957 141582846 + 0 NA Intergenic Intergenic 94077 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 174 chr1 90185030 90186170 + 0 NA TTS (NM_032270) TTS (NM_032270) 86956 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 family member C protein-coding 1571 chr15 27846661 27847507 + 0 NA Intergenic Intergenic -440618 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 422 chr10 5442250 5443319 + 0 NA intron (NM_001171864, intron 2 of 3) intron (NM_001171864, intron 2 of 3) 4009 NM_001171864 79861 Hs.163079 NM_024803 ENSG00000178462 TUBAL3 - tubulin alpha like 3 protein-coding 905 chr12 41681750 41682685 + 0 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 99967 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 3308 chr5 9681309 9682681 + 0 NA intron (NR_027112, intron 9 of 12) MER5A1|DNA|hAT-Charlie -51532 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 3681 chr6 52361178 52361993 + 0 NA TTS (NM_012288) TTS (NM_012288) 75780 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 52 chr1 22822237 22823084 + 0 NA intron (NM_001330398, intron 3 of 15) intron (NM_001330398, intron 3 of 15) 44316 NM_001083621 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 302 chr1 177825885 177828301 + 0 NA Intergenic Intergenic 111957 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 1451 chr14 75866212 75868176 + 0 NA Intergenic Intergenic -27315 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 2452 chr2 160083253 160084060 + 0 NA intron (NM_033394, intron 24 of 26) intron (NM_033394, intron 24 of 26) 40310 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 3842 chr6 157886838 157887667 + 0 NA intron (NM_153746, intron 1 of 8) intron (NM_153746, intron 1 of 8) -62912 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 593 chr11 16321557 16322440 + 0 NA intron (NM_001145819, intron 3 of 15) intron (NM_001145819, intron 3 of 15) 102415 NM_001145819 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box 6 protein-coding 3358 chr5 58622767 58623631 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 29528 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 188 chr1 100653845 100654770 + 0 NA 3' UTR (NM_001918, exon 11 of 11) 3' UTR (NM_001918, exon 11 of 11) -10478 NM_001256385 127495 Hs.44277 NM_144620 ENSG00000122477 LRRC39 - leucine rich repeat containing 39 protein-coding 402 chr1 232362921 232363817 + 0 NA Intergenic Intergenic 287985 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 3152 chr4 77488986 77489989 + 0 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) -5234 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 1940 chr18 11074075 11075386 + 0 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 74031 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 3366 chr5 63149792 63150555 + 0 NA Intergenic Intergenic 107946 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1641 chr15 74515579 74516250 + 0 NA Intergenic Intergenic -12716 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 640 chr11 32895261 32896162 + 0 NA Intergenic MSTD-int|LTR|ERVL-MaLR -19013 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 1384 chr14 51973889 51975629 + 0 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 18920 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 1468 chr14 78786113 78787287 + 0 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -83374 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 3184 chr4 91523416 91524285 + 0 NA intron (NM_001145065, intron 5 of 10) LTR75B|LTR|ERVL 367668 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1726 chr16 33887366 33888111 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 74765 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 2068 chr18 77075000 77076521 + 0 NA intron (NM_198531, intron 15 of 29) intron (NM_198531, intron 15 of 29) -80012 NM_001278669 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding 1464 chr14 78669076 78670070 + 0 NA intron (NM_001330195, intron 1 of 20) intron (NM_001330195, intron 1 of 20) 32857 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1494 chr14 80223005 80223741 + 0 NA intron (NM_001105250, intron 5 of 6) intron (NM_001105250, intron 5 of 6) -454389 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 3440 chr5 124141951 124142559 + 0 NA Intergenic Intergenic -61450 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 4428 chr8 135024378 135025378 + 0 NA Intergenic L2c|LINE|L2 126139 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 4354 chr8 94530769 94531897 + 0 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) 181328 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 2018 chr18 48231817 48233327 + 0 NA intron (NM_002747, intron 2 of 5) intron (NM_002747, intron 2 of 5) 113862 NM_001127176 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 3426 chr5 114923787 114924937 + 0 NA intron (NM_001164469, intron 3 of 3) LTR67B|LTR|ERVL -13490 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 1906 chr17 71972786 71973984 + 0 NA Intergenic Intergenic -148709 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 464 chr10 58775270 58776276 + 0 NA Intergenic HERVL18-int|LTR|ERVL 288546 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 2977 chr3 135031560 135033603 + 0 NA Intergenic L2c|LINE|L2 518482 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 3235 chr4 141284480 141285336 + 0 NA intron (NM_001153585, intron 1 of 3) Tigger2|DNA|TcMar-Tigger 9638 NR_033939 100129858 Hs.660477 NR_033939 ENSG00000196951 SCOC-AS1 - SCOC antisense RNA 1 ncRNA 2011 chr18 45859680 45860516 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) 75695 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 6 chr1 5428914 5429924 + 0 NA Intergenic Intergenic -194712 NR_039612 100616489 NR_039612 ENSG00000264341 MIR4417 mir-4417 microRNA 4417 ncRNA 3452 chr5 134883039 134884169 + 0 NA Intergenic Intergenic -11965 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 4435 chr8 135601276 135602628 + 0 NA intron (NM_001029939, intron 9 of 16) intron (NM_001029939, intron 9 of 16) -8362 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 3867 chr7 4018047 4018944 + 0 NA intron (NM_152744, intron 13 of 44) intron (NM_152744, intron 13 of 44) -150822 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1304 chr13 112174342 112175811 + 0 NA Intergenic Tigger15a|DNA|TcMar-Tigger -73280 NR_135814 105370369 NR_135814 ENSG00000215881 LOC105370369 - uncharacterized LOC105370369 ncRNA 2327 chr2 85661917 85662952 + 0 NA intron (NM_201594, intron 18 of 20) intron (NM_201594, intron 18 of 20) 16380 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 3179 chr4 89920382 89921312 + 0 NA intron (NM_014883, intron 3 of 23) intron (NM_014883, intron 3 of 23) 57499 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 3189 chr4 94930939 94931745 + 0 NA Intergenic Intergenic 181264 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 3569 chr6 14230737 14231903 + 0 NA Intergenic Intergenic 54365 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 1593 chr15 47107889 47108605 + 0 NA Intergenic Intergenic -368156 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 705 chr11 78761158 78761973 + 0 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 351588 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 4381 chr8 110623146 110623903 + 0 NA intron (NM_001099748, intron 4 of 7) intron (NM_001099748, intron 4 of 7) -3233 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 1720 chr16 23083677 23084781 + 0 NA intron (NM_020718, intron 14 of 15) intron (NM_020718, intron 14 of 15) 76362 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 3053 chr3 184644486 184646694 + 0 NA intron (NM_001009921, intron 30 of 46) L1MB3|LINE|L1 115659 NM_015303 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8, CORVET complex subunit protein-coding 2206 chr2 36999715 37000614 + 0 NA intron (NM_053276, intron 7 of 15) intron (NM_053276, intron 7 of 15) 76331 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT - vitrin protein-coding 4471 chr9 8085017 8086781 + 0 NA Intergenic Intergenic -286093 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 TMEM261 C9orf123 transmembrane protein 261 protein-coding 2177 chr2 16370067 16371790 + 0 NA Intergenic Intergenic 180379 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 912 chr12 46692896 46694121 + 0 NA Intergenic Intergenic -30300 NM_030674 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 785 chr11 116508125 116509620 + 0 NA Intergenic L2a|LINE|L2 -1267 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 1432 chr14 66603513 66604513 + 0 NA Intergenic Intergenic -349076 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 LINC00238 C14orf53|NCRNA00238 long intergenic non-protein coding RNA 238 ncRNA 4574 chr9 99284663 99285458 + 0 NA intron (NM_001077181, intron 11 of 13) intron (NM_001077181, intron 11 of 13) 44143 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 599 chr11 18084450 18087792 + 0 NA Intergenic MER91C|DNA|hAT-Tip100 -23786 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 1930 chr18 3831765 3833100 + 0 NA intron (NM_004746, intron 4 of 12) intron (NM_004746, intron 4 of 12) 12926 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 587 chr11 15493161 15494274 + 0 NA Intergenic Intergenic -171714 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 1235 chr13 99494120 99494905 + 0 NA intron (NM_015296, intron 38 of 55) L3|LINE|CR1 10174 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 3814 chr6 138524290 138525128 + 0 NA intron (NM_020340, intron 2 of 33) intron (NM_020340, intron 2 of 33) 14918 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 95 chr1 42201179 42202286 + 0 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 182646 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 298 chr1 176966980 176968256 + 0 NA intron (NM_207108, intron 8 of 21) intron (NM_207108, intron 8 of 21) 30963 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 3291 chr5 6611348 6612200 + 0 NA intron (NM_001193455, intron 9 of 17) intron (NM_001193455, intron 9 of 17) -21661 NM_001324322 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 923 chr12 59283169 59283731 + 0 NA intron (NM_001136051, intron 5 of 18) intron (NM_001136051, intron 5 of 18) 29877 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 243 chr1 152896354 152897205 + 0 NA Intergenic LTR16E2|LTR|ERVL 15740 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 4731 chrX 151151421 151152073 + 0 NA Intergenic Intergenic -8596 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 3835 chr6 156669545 156670670 + 0 NA Intergenic Intergenic 402176 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 2051 chr18 64316555 64317717 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -45761 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 2682 chr20 58940500 58941439 + 0 NA Intergenic Intergenic 57437 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 753 chr11 110822043 110823082 + 0 NA Intergenic Intergenic -238650 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 2404 chr2 132950398 132951043 + 0 NA intron (NR_027020, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL -31195 NR_027019 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B like pseudo 2171 chr2 15001124 15001997 + 0 NA Intergenic Intergenic 226345 NM_001291410 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 106 chr1 48804073 48804927 + 0 NA intron (NM_001286238, intron 11 of 12) L1ME3A|LINE|L1 116143 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 2611 chr20 12400817 12401934 + 0 NA Intergenic Intergenic 502862 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 4425 chr8 131699372 131700085 + 0 NA Intergenic MIR3|SINE|MIR -243822 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 65 chr1 29422634 29423968 + 0 NA intron (NM_001166005, intron 16 of 20) intron (NM_001166005, intron 16 of 20) 25712 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 203 chr1 112490533 112492442 + 0 NA intron (NM_004980, intron 2 of 7) intron (NM_004980, intron 2 of 7) 39208 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 4373 chr8 103893856 103895115 + 0 NA intron (NR_126339, intron 2 of 2) L1M4|LINE|L1 17986 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 1023 chr12 104900447 104902156 + 0 NA intron (NM_018413, intron 1 of 2) MIR|SINE|MIR 50609 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537 carbohydrate sulfotransferase 11 protein-coding 2742 chr21 41576522 41577603 + 0 NA intron (NM_001389, intron 11 of 32) intron (NM_001389, intron 11 of 32) 7296 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 4702 chrX 108430773 108431857 + 0 NA Intergenic MamRep434|DNA|TcMar-Tigger 133543 NR_106735 102464835 NR_106735 ENSG00000275110 MIR6087 hsa-mir-6087 microRNA 6087 ncRNA 86 chr1 37603719 37604547 + 0 NA Intergenic Intergenic -23031 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 1199 chr13 74516863 74517825 + 0 NA intron (NM_007249, intron 3 of 7) intron (NM_007249, intron 3 of 7) 190722 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 2084 chr19 29801703 29802882 + 0 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -98156 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 2473 chr2 171980781 171982402 + 0 NA intron (NM_001136554, intron 1 of 20) Cheshire|DNA|hAT-Charlie 35819 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 1158 chr13 42975077 42976595 + 0 NA Intergenic Intergenic -23192 NR_135319 105370177 NR_135319 ENSG00000283554 LOC105370177 - uncharacterized LOC105370177 ncRNA 656 chr11 41693143 41694013 + 0 NA Intergenic MER54A|LTR|ERVL -42540 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 2170 chr2 14848300 14849406 + 0 NA Intergenic Intergenic 73638 NM_001291410 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 2335 chr2 90371523 90372543 + 0 NA Intergenic HSATII|Satellite|Satellite 1260149 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 2921 chr3 120113334 120114185 + 0 NA TTS (NR_029584) TTS (NR_029584) 817 NR_029584 406975 NR_029584 ENSG00000163430 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 4726 chrX 131726969 131728153 + 0 NA Intergenic Intergenic -74109 NR_046691 100874102 Hs.619341 NR_046691 ENSG00000235849 HS6ST2-AS1 - HS6ST2 antisense RNA 1 ncRNA 3468 chr5 138565962 138566731 + 0 NA Intergenic AluJb|SINE|Alu -32281 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 435 chr10 16732243 16732968 + 0 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) 126848 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 3195 chr4 99368727 99369724 + 0 NA Intergenic Intergenic 186698 NM_001100428 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 1482 chr14 79224049 79225407 + 0 NA intron (NM_001330195, intron 8 of 20) intron (NM_001330195, intron 8 of 20) 354654 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 885 chr12 27701754 27702459 + 0 NA intron (NM_001198916, intron 1 of 27) intron (NM_001198916, intron 1 of 27) 25061 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 1412 chr14 61611848 61613085 + 0 NA Intergenic Intergenic 136064 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 1709 chr16 17385969 17387227 + 0 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 158237 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 339 chr1 203221420 203222664 + 0 NA Intergenic MSTB2|LTR|ERVL-MaLR -23182 NR_045785 1118 Hs.201688 NM_003465 ENSG00000133063 CHIT1 CHI3|CHIT|CHITD chitinase 1 protein-coding 228 chr1 121351385 121360643 + 0 NA Intergenic ALR/Alpha|Satellite|centr 95104 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 3783 chr6 123074290 123075445 + 0 NA intron (NM_001319042, intron 1 of 3) MER51A|LTR|ERV1 4521 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 268 chr1 163775592 163776544 + 0 NA Intergenic Intergenic -383087 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 829 chr11 132069908 132071188 + 0 NA intron (NM_001144058, intron 2 of 7) intron (NM_001144058, intron 2 of 7) -83648 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 2872 chr3 78545648 78546828 + 0 NA Intergenic Intergenic 522371 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 3677 chr6 47203561 47204374 + 0 NA intron (NM_014452, intron 4 of 5) intron (NM_014452, intron 4 of 5) 73716 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 596 chr11 17435161 17436352 + 0 NA intron (NM_001287174, intron 19 of 38) intron (NM_001287174, intron 19 of 38) -24878 NM_001166290 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 1297 chr13 110696729 110697969 + 0 NA Intergenic Intergenic -8283 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 2090 chr19 32964918 32965770 + 0 NA intron (NM_207325, intron 16 of 18) intron (NM_207325, intron 16 of 18) 68322 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like 3 (C. elegans) protein-coding 1521 chr14 85339668 85341503 + 0 NA Intergenic Intergenic -513034 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 1862 chr17 47949978 47951416 + 0 NA Intergenic Intergenic -25318 NM_001077504 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 (hemokinin) protein-coding 2352 chr2 96753225 96754732 + 0 NA Intergenic L1MB7|LINE|L1 28006 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 3495 chr5 152501515 152502929 + 0 NA Intergenic Intergenic -150313 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 1082 chr12 118133425 118134527 + 0 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 272052 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 121 chr1 55538585 55539464 + 0 NA intron (NM_015306, intron 64 of 67) MIRb|SINE|MIR 33129 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 1066 chr12 114814623 114815485 + 0 NA intron (NM_080717, intron 6 of 7) intron (NM_080717, intron 6 of 7) 28914 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box 5 protein-coding 487 chr10 80318927 80320301 + 0 NA Intergenic Intergenic 292529 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 494 chr10 86546955 86547783 + 0 NA Intergenic Intergenic 362431 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 1956 chr18 25510405 25511160 + 0 NA Intergenic Intergenic 105767 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 3333 chr5 49413197 49414962 + 0 NA Intergenic ALR/Alpha|Satellite|centr 323155 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 238 chr1 150135063 150135987 + 0 NA intron (NR_135098, intron 1 of 3) intron (NR_135098, intron 1 of 3) 2599 NR_135098 105371433 Hs.599366 NR_135098 LOC105371433 - uncharacterized LOC105371433 ncRNA 2235 chr2 47453206 47455170 + 0 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -50113 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 2778 chr22 29326384 29327367 + 0 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 13498 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 3175 chr4 86826556 86827504 + 0 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -24396 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 873 chr12 18318074 18319124 + 0 NA Intergenic MER57-int|LTR|ERV1 -75472 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 3604 chr6 21185761 21186681 + 0 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 325902 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 3081 chr4 8147280 8147992 + 0 NA intron (NM_001130083, intron 1 of 20) intron (NM_001130083, intron 1 of 20) 12923 NM_001130083 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 3099 chr4 23905382 23907071 + 0 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -14526 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 448 chr10 38777654 38778493 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 60999 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 3634 chr6 35136025 35136763 + 0 NA Intergenic Intergenic -27207 NM_001261819 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 3760 chr6 111955242 111955846 + 0 NA Intergenic L1ME3|LINE|L1 -28067 NM_147686 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 2631 chr20 20299200 20299915 + 0 NA intron (NM_015585, intron 25 of 26) LTR16D|LTR|ERVL -49208 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 2278 chr2 59041727 59042781 + 0 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 294366 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 4152 chr7 133492091 133493749 + 0 NA intron (NR_120513, intron 3 of 3) intron (NR_120513, intron 3 of 3) 16721 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 4639 chrUn_gl000216 5685 9869 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 4647 chrUn_gl000216 162981 165382 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 3297 chr5 7884319 7885493 + 0 NA intron (NR_134482, intron 5 of 13) intron (NR_134482, intron 5 of 13) 15689 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 1532 chr14 90166669 90167682 + 0 NA Intergenic Intergenic -81681 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 4246 chr8 20752037 20753459 + 0 NA Intergenic Intergenic -58396 NR_130773 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 713 chr11 91576195 91577475 + 0 NA Intergenic Intergenic -508427 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 3557 chr6 1757081 1757926 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 146822 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 4233 chr8 12670249 12672076 + 0 NA intron (NR_102423, intron 1 of 1) intron (NR_102423, intron 1 of 1) -2252 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 2839 chr3 53990657 53991522 + 0 NA Intergenic Intergenic -65047 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 4532 chr9 72115769 72116702 + 0 NA intron (NM_001163, intron 2 of 12) intron (NM_001163, intron 2 of 12) 171040 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 1679 chr16 6215422 6216332 + 0 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 146173 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 4238 chr8 18458680 18460833 + 0 NA intron (NM_015310, intron 11 of 15) intron (NM_015310, intron 11 of 15) 206649 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 4346 chr8 93245508 93246471 + 0 NA Intergenic Intergenic -66250 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 4215 chr8 4131086 4131771 + 0 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 720900 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1262 chr13 102961023 102962080 + 0 NA intron (NM_001321941, intron 1 of 5) intron (NM_001321941, intron 1 of 5) 1485 NM_001321932 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 1290 chr13 108629282 108630159 + 0 NA Intergenic Intergenic -110260 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 1527 chr14 89720835 89721612 + 0 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 162231 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 2162 chr2 11258871 11261442 + 0 NA intron (NR_040080, intron 6 of 8) AluSz|SINE|Alu 12146 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 1132 chr13 27435554 27436372 + 0 NA Intergenic Intergenic -101041 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 4308 chr8 72775785 72776713 + 0 NA intron (NR_033652, intron 2 of 4) intron (NR_033652, intron 2 of 4) -19518 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 4707 chrX 110432407 110433102 + 0 NA intron (NM_001128172, intron 8 of 14) L1PA16|LINE|L1 66449 NM_001128172 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 1925 chr18 3611540 3612487 + 0 NA intron (NM_001003809, intron 4 of 9) intron (NM_001003809, intron 4 of 9) 8278 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 3847 chr6 158820098 158821285 + 0 NA intron (NM_001007466, intron 1 of 12) intron (NM_001007466, intron 1 of 12) 86999 NM_020245 56995 Hs.486993 NM_020245 ENSG00000130338 TULP4 TUSP tubby like protein 4 protein-coding 2574 chr2 238925040 238925854 + 0 NA intron (NM_001278306, intron 4 of 8) intron (NM_001278306, intron 4 of 8) -44118 NM_016510 51540 Hs.731909 NM_016510 ENSG00000132330 SCLY SCL|hSCL selenocysteine lyase protein-coding 2916 chr3 117192336 117193323 + 0 NA Intergenic Intergenic 552551 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 3126 chr4 49633113 49660150 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 657972 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 631 chr11 25976221 25977045 + 0 NA Intergenic Intergenic -234037 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 547 chr10 132306666 132307776 + 0 NA Intergenic Intergenic 372548 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 1544 chr14 94604295 94605507 + 0 NA Intergenic Intergenic -8944 NM_032036 83982 Hs.94695 NM_032036 ENSG00000119632 IFI27L2 FAM14A|ISG12B|TLH29 interferon alpha inducible protein 27 like 2 protein-coding 1616 chr15 60940555 60941659 + 0 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -21378 NM_134260 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 4694 chrX 69704186 69704964 + 0 NA intron (NM_020730, intron 4 of 13) intron (NM_020730, intron 4 of 13) -28731 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 396 chr1 230265602 230266843 + 0 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 63280 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 1422 chr14 63742042 63743223 + 0 NA intron (NM_020663, intron 2 of 4) intron (NM_020663, intron 2 of 4) 42961 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone beta 5 protein-coding 482 chr10 78934221 78935152 + 0 NA intron (NM_001322832, intron 5 of 27) MER5B|DNA|hAT-Charlie 34097 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 949 chr12 77830183 77830800 + 0 NA Intergenic MER46C|DNA|TcMar-Tigger -371131 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 499 chr10 92969637 92971072 + 0 NA intron (NM_001257101, intron 1 of 9) intron (NM_001257101, intron 1 of 9) -9554 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 3432 chr5 122300619 122301368 + 0 NA intron (NM_014035, intron 3 of 6) intron (NM_014035, intron 3 of 6) 71432 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 4713 chrX 111354564 111355530 + 0 NA intron (NM_001004308, intron 1 of 2) HERV9-int|LTR|ERV1 28794 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 ZCCHC16 Mar4|Mart4 zinc finger CCHC-type containing 16 protein-coding 4556 chr9 86120008 86120755 + 0 NA intron (NM_001244959, intron 1 of 14) intron (NM_001244959, intron 1 of 14) 32967 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 1047 chr12 108962278 108963395 + 0 NA non-coding (NR_135127, exon 7 of 7) non-coding (NR_135127, exon 7 of 7) 7597 NM_001320042 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 3856 chr6 168509727 168510872 + 0 NA Intergenic Intergenic -28062 NR_110312 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 1276 chr13 104503999 104504957 + 0 NA Intergenic Intergenic 426928 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 3228 chr4 140740076 140740892 + 0 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 153562 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 909 chr12 42377386 42378312 + 0 NA Intergenic Intergenic 160824 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 4121 chr7 130032558 130033946 + 0 NA TTS (NR_046443) TTS (NR_046443) 13040 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 4315 chr8 73614765 73615658 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -29069 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 1124 chr13 22652146 22652953 + 0 NA Intergenic Intergenic -131875 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 2618 chr20 16152108 16152837 + 0 NA Intergenic Intergenic -185945 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 2981 chr3 136617370 136618129 + 0 NA intron (NM_001291999, intron 1 of 3) intron (NM_001291999, intron 1 of 3) -31568 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 75 chr1 35147177 35148212 + 0 NA Intergenic Intergenic -12399 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 4266 chr8 31245860 31247553 + 0 NA Intergenic Intergenic -250562 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 2588 chr20 5146999 5148012 + 0 NA intron (NM_003818, intron 1 of 12) L2b|LINE|L2 40098 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 1163 chr13 44015899 44016846 + 0 NA intron (NM_001347968, intron 3 of 17) intron (NM_001347968, intron 3 of 17) -6616 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 450 chr10 38871765 38872492 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -117599 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 4518 chr9 37645749 37647203 + 0 NA Intergenic MIR3|SINE|MIR -4576 NM_014907 22844 Hs.163990 NM_014907 ENSG00000070601 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 1702 chr16 12646589 12647734 + 0 NA intron (NM_032167, intron 20 of 20) intron (NM_032167, intron 20 of 20) -167017 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 1405 chr14 59625438 59626522 + 0 NA Intergenic Intergenic -29401 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 3118 chr4 40394082 40395172 + 0 NA Intergenic Intergenic 57281 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 4442 chr8 140508182 140509362 + 0 NA Intergenic Intergenic 206527 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 4141 chr7 132681186 132681948 + 0 NA intron (NM_001317177, intron 3 of 8) intron (NM_001317177, intron 3 of 8) 38108 NR_037427 100500804 NR_037427 MIR3654 - microRNA 3654 ncRNA 1729 chr16 33982665 33984197 + 0 NA Intergenic ALR/Alpha|Satellite|centr -20928 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 146 chr1 75145067 75146509 + 0 NA Intergenic Intergenic -6366 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 3202 chr4 114060084 114061039 + 0 NA intron (NM_001148, intron 1 of 45) intron (NM_001148, intron 1 of 45) -12877 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 1351 chr14 37140062 37140854 + 0 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 13685 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 356 chr1 206122002 206123217 + 0 NA Intergenic Intergenic -14656 NM_001317901 729533 Hs.339665 NM_001123168 ENSG00000196550 FAM72A LMPIP|Ugene family with sequence similarity 72 member A protein-coding 2396 chr2 127782992 127783769 + 0 NA Intergenic Intergenic 56261 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 2720 chr21 35772955 35775029 + 0 NA promoter-TSS (NM_001282537) promoter-TSS (NM_001282537) -622 NM_001282537 101928147 Hs.303798 NM_001282537 ENSG00000222018 C21orf140 - chromosome 21 open reading frame 140 protein-coding 528 chr10 121253794 121254747 + 0 NA Intergenic Intergenic 41775 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G-protein signaling 10 protein-coding 164 chr1 87215944 87217347 + 0 NA Intergenic Intergenic 46392 NM_001206653 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like endophilin B1 protein-coding 4325 chr8 81807456 81808072 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -20748 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 807 chr11 122211243 122212758 + 0 NA intron (NR_137179, intron 1 of 4) intron (NR_137179, intron 1 of 4) 26696 NR_137192 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 3897 chr7 26465473 26466188 + 0 NA intron (NR_015364, intron 1 of 4) intron (NR_015364, intron 1 of 4) 22722 NR_015364 441204 Hs.587432 NR_015364 LOC441204 - uncharacterized LOC441204 ncRNA 2040 chr18 59311453 59312310 + 0 NA Intergenic Intergenic -103528 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 2678 chr20 58516111 58517038 + 0 NA intron (NM_001190827, intron 1 of 3) intron (NM_001190827, intron 1 of 3) 1130 NM_001190827 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 2898 chr3 108476160 108476832 + 0 NA promoter-TSS (NM_032579) promoter-TSS (NM_032579) -366 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 4379 chr8 109964906 109965693 + 0 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -134354 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 882 chr12 26774776 26775631 + 0 NA exon (NM_002223, exon 25 of 57) exon (NM_002223, exon 25 of 57) 210928 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 1050 chr12 109433050 109434030 + 0 NA intron (NM_018711, intron 1 of 14) AluSz|SINE|Alu 25505 NM_018711 55530 Hs.4221 NM_018711 ENSG00000166111 SVOP - SV2 related protein protein-coding 4054 chr7 107630677 107631605 + 0 NA intron (NM_002291, intron 5 of 33) intron (NM_002291, intron 5 of 33) 12663 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 1031 chr12 105737015 105738409 + 0 NA intron (NM_001145199, intron 1 of 5) intron (NM_001145199, intron 1 of 5) 13298 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 4585 chr9 111121559 111122376 + 0 NA Intergenic Intergenic 496308 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 2942 chr3 127318962 127319773 + 0 NA intron (NM_004526, intron 2 of 15) intron (NM_004526, intron 2 of 15) 2167 NR_073375 4171 Hs.477481 NM_004526 ENSG00000073111 MCM2 BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 3401 chr5 94028825 94029827 + 0 NA intron (NM_032290, intron 20 of 20) intron (NM_032290, intron 20 of 20) 74935 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 454 chr10 42397585 42401529 + 0 NA Intergenic ALR/Alpha|Satellite|centr 463936 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 3139 chr4 71976129 71977379 + 0 NA Intergenic Intergenic -76249 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 1364 chr14 42643197 42644292 + 0 NA Intergenic Intergenic 567685 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 2538 chr2 218298793 218299504 + 0 NA intron (NR_026597, intron 3 of 12) intron (NR_026597, intron 3 of 12) 151692 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 634 chr11 26107371 26108389 + 0 NA Intergenic Intergenic -102790 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 2551 chr2 228835995 228837542 + 0 NA Intergenic Intergenic 100676 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 978 chr12 96067526 96068935 + 0 NA TTS (NR_077225) TTS (NR_077225) 25199 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 3324 chr5 38536716 38537834 + 0 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 19473 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 3741 chr6 106140052 106140970 + 0 NA Intergenic Intergenic -289512 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 3752 chr6 110578430 110579162 + 0 NA intron (NM_001123364, intron 4 of 4) MER5A|DNA|hAT-Charlie 77172 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 2144 chr2 6208218 6210366 + 0 NA Intergenic Intergenic 87182 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 378 chr1 210837327 210838241 + 0 NA intron (NM_001122834, intron 11 of 11) intron (NM_001122834, intron 11 of 11) 335144 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 325 chr1 184861563 184862405 + 0 NA intron (NM_052966, intron 3 of 13) AluSx|SINE|Alu 81734 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 FAM129A C1orf24|GIG39|NIBAN family with sequence similarity 129 member A protein-coding 889 chr12 31082847 31083740 + 0 NA intron (NM_001080509, intron 1 of 7) intron (NM_001080509, intron 1 of 7) 3455 NM_001080509 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 1233 chr13 99448968 99450373 + 0 NA exon (NM_001130048, exon 53 of 56) exon (NM_001130048, exon 53 of 56) -34668 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 3390 chr5 73942697 73943387 + 0 NA intron (NM_001292004, intron 1 of 13) intron (NM_001292004, intron 1 of 13) -5793 NM_003633 8507 Hs.104925 NM_003633 ENSG00000171617 ENC1 CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10 ectodermal-neural cortex 1 protein-coding 1162 chr13 44002949 44003821 + 0 NA intron (NM_001347963, intron 2 of 15) intron (NM_001347963, intron 2 of 15) -19603 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 3972 chr7 69228844 69229731 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 165382 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 684 chr11 72469682 72471387 + 0 NA intron (NM_006645, intron 2 of 6) intron (NM_006645, intron 2 of 6) -7100 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 211 chr1 115979386 115980960 + 0 NA Intergenic MIRc|SINE|MIR -99316 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 2831 chr3 41195463 41196585 + 0 NA Intergenic Intergenic -44891 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 3315 chr5 13994442 13995326 + 0 NA Intergenic Intergenic -50295 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 1924 chr18 2881041 2882144 + 0 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 34564 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 3042 chr3 177288913 177290180 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 129837 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1214 chr13 94600498 94601415 + 0 NA intron (NM_005708, intron 3 of 8) intron (NM_005708, intron 3 of 8) -90230 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 389 chr1 223829288 223830422 + 0 NA intron (NM_001143962, intron 2 of 16) intron (NM_001143962, intron 2 of 16) 23581 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 1660 chr15 92031056 92031908 + 0 NA intron (NR_110106, intron 2 of 3) HSMAR1|DNA|TcMar-Mariner 24913 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 3525 chr5 158334542 158335260 + 0 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 191869 NM_001324101 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 3207 chr4 120419457 120420099 + 0 NA exon (NM_001083, exon 21 of 21) exon (NM_001083, exon 21 of 21) 43840 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - septin 7 pseudogene pseudo 3887 chr7 24148488 24149857 + 0 NA Intergenic L2a|LINE|L2 -174635 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 966 chr12 89344639 89345637 + 0 NA Intergenic MIR|SINE|MIR 68331 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 2216 chr2 40340713 40341680 + 0 NA 3' UTR (NM_001112800, exon 9 of 9) 3' UTR (NM_001112800, exon 9 of 9) 196422 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 2314 chr2 70719106 70719833 + 0 NA intron (NM_003236, intron 2 of 5) intron (NM_003236, intron 2 of 5) -10697 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 992 chr12 98321043 98322214 + 0 NA Intergenic Intergenic 11271 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 1954 chr18 25292823 25293511 + 0 NA Intergenic Intergenic 323382 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 218 chr1 117014734 117015976 + 0 NA intron (NR_125973, intron 2 of 3) intron (NR_125973, intron 2 of 3) 6093 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 2843 chr3 55277883 55278940 + 0 NA Intergenic Intergenic 237015 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 2345 chr2 91612299 91615045 + 0 NA Intergenic HSATII|Satellite|Satellite 234303 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 3124 chr4 49118063 49129804 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 135274 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 3391 chr5 73961270 73962394 + 0 NA intron (NM_001292004, intron 1 of 13) intron (NM_001292004, intron 1 of 13) -19137 NM_000521 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 2973 chr3 134752914 134753838 + 0 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 239277 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 4602 chr9 120179603 120180538 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -2753 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 2567 chr2 236876799 236878186 + 0 NA intron (NM_001037131, intron 13 of 17) intron (NM_001037131, intron 13 of 17) 199160 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 2999 chr3 149933638 149934751 + 0 NA Intergenic Intergenic -22112 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 4321 chr8 81063762 81064671 + 0 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 19219 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 3289 chr5 6443687 6444691 + 0 NA Intergenic MIR|SINE|MIR -4547 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 3158 chr4 78953295 78954558 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -24798 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 - Fraser extracellular matrix complex subunit 1 protein-coding 2188 chr2 27114925 27115636 + 0 NA intron (NM_001253724, intron 1 of 12) intron (NM_001253724, intron 1 of 12) 43988 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 2767 chr22 18450705 18451521 + 0 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) 12614 NR_030378 693233 NR_030378 ENSG00000207780 MIR648 MIRN648|hsa-mir-648 microRNA 648 ncRNA 1778 chr16 73870141 73871152 + 0 NA Intergenic MSTB2|LTR|ERVL-MaLR 378774 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 3667 chr6 43951121 43952326 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -16614 NM_001171992 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 protein-coding 1859 chr17 46476664 46477448 + 0 NA intron (NM_001075099, intron 1 of 12) AluJr|SINE|Alu 30538 NM_001075099 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 2339 chr2 90382775 90384867 + 0 NA Intergenic HSATII|Satellite|Satellite 1271937 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 160 chr1 85602870 85604053 + 0 NA Intergenic Intergenic 3984 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 3782 chr6 123070459 123071271 + 0 NA intron (NM_001319042, intron 1 of 3) Zaphod|DNA|hAT-Tip100 519 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 98 chr1 44418362 44419207 + 0 NA intron (NM_014652, intron 2 of 19) intron (NM_014652, intron 2 of 19) 6306 NM_014652 9670 Hs.158497 NM_014652 ENSG00000117408 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding 1278 chr13 107025404 107026318 + 0 NA Intergenic Intergenic -3050 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 1048 chr12 109035417 109036846 + 0 NA Intergenic Intergenic 6545 NR_039717 100616240 NR_039717 ENSG00000257221 MIR4496 - microRNA 4496 ncRNA 2901 chr3 111746370 111747369 + 0 NA Intergenic Intergenic -11596 NM_001042575 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane protease, serine 7 protein-coding 2434 chr2 148136650 148137405 + 0 NA Intergenic L2c|LINE|L2 -465059 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 1381 chr14 51586197 51587243 + 0 NA Intergenic Intergenic -24298 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 1061 chr12 113553839 113555241 + 0 NA intron (NM_004658, intron 9 of 21) intron (NM_004658, intron 9 of 21) 18864 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 2054 chr18 66885537 66886626 + 0 NA Intergenic Intergenic -182203 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 3792 chr6 124478325 124479098 + 0 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -125440 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 3735 chr6 102110656 102111604 + 0 NA intron (NM_001166247, intron 3 of 16) intron (NM_001166247, intron 3 of 16) 264269 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 2785 chr22 36364796 36365466 + 0 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) 59454 NM_001082579 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding protein, fox-1 homolog 2 protein-coding 3224 chr4 139637194 139638193 + 0 NA Intergenic Intergenic 296107 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 3635 chr6 35510990 35511690 + 0 NA Intergenic MER5B|DNA|hAT-Charlie -30625 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 tubby like protein 1 protein-coding 3732 chr6 101008153 101008653 + 0 NA intron (NM_006828, intron 36 of 41) intron (NM_006828, intron 36 of 41) -96852 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 1555 chr14 99099457 99100469 + 0 NA Intergenic Intergenic -77987 NM_182560 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 586 chr11 15369724 15371497 + 0 NA Intergenic Intergenic 199962 NM_001278313 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - inscuteable homolog (Drosophila) protein-coding 2870 chr3 78081807 78082490 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 934985 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 4337 chr8 90509455 90510482 + 0 NA Intergenic MER94|DNA|hAT-Blackjack 259971 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 410 chr1 240302314 240303089 + 0 NA intron (NM_001305424, intron 2 of 18) L2|LINE|L2 47516 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 2859 chr3 62790648 62791871 + 0 NA intron (NM_183394, intron 1 of 27) L2b|LINE|L2 69805 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 999 chr12 99092843 99093885 + 0 NA intron (NM_001160, intron 17 of 25) intron (NM_001160, intron 17 of 25) 54286 NM_001160 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 3193 chr4 98270412 98272167 + 0 NA Intergenic Intergenic -16788 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 3019 chr3 167713770 167714751 + 0 NA Intergenic Intergenic 99453 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 1185 chr13 52479357 52480260 + 0 NA Intergenic Intergenic 43724 NM_031290 83446 Hs.120573 NM_031290 ENSG00000123171 CCDC70 - coiled-coil domain containing 70 protein-coding 2169 chr2 14749909 14750956 + 0 NA Intergenic Intergenic -22375 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 4637 chrUn_gl000216 49 2913 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 1741 chr16 51767883 51768924 + 0 NA Intergenic Intergenic -28027 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 4211 chr8 3624165 3624899 + 0 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1038541 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 1315 chr14 23540479 23541234 + 0 NA promoter-TSS (NM_001164816) promoter-TSS (NM_001164816) -77 NM_001164817 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 1130 chr13 26261109 26261904 + 0 NA intron (NM_016529, intron 24 of 36) intron (NM_016529, intron 24 of 36) 218594 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 4599 chr9 119774824 119775570 + 0 NA intron (NM_014010, intron 5 of 21) intron (NM_014010, intron 5 of 21) 168283 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 189 chr1 105534076 105534867 + 0 NA Intergenic Tigger2|DNA|TcMar-Tigger 627086 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 2330 chr2 89850022 89851276 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 738765 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 2849 chr3 58522551 58523427 + 0 NA promoter-TSS (NM_003500) promoter-TSS (NM_003500) -60 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|THCCox acyl-CoA oxidase 2 protein-coding 480 chr10 78305907 78306713 + 0 NA intron (NR_131178, intron 7 of 7) intron (NR_131178, intron 7 of 7) -341492 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 107 chr1 48919385 48920277 + 0 NA intron (NM_019073, intron 1 of 12) intron (NM_019073, intron 1 of 12) 18049 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 3810 chr6 136976030 136977116 + 0 NA intron (NM_005923, intron 10 of 29) intron (NM_005923, intron 10 of 29) 26321 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 87 chr1 37858531 37859472 + 0 NA Intergenic L2a|LINE|L2 81043 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 2385 chr2 112669891 112670613 + 0 NA intron (NM_006343, intron 1 of 18) intron (NM_006343, intron 1 of 18) 14061 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 4099 chr7 126123581 126124534 + 0 NA intron (NM_001127323, intron 9 of 10) intron (NM_001127323, intron 9 of 10) 574181 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 4339 chr8 91336234 91337015 + 0 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 102908 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 1832 chr17 32727875 32729223 + 0 NA Intergenic MIRb|SINE|MIR -38297 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 2704 chr21 17735571 17736456 + 0 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -55510 NR_136546 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 3796 chr6 124894659 124895707 + 0 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 291032 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 221 chr1 117654409 117655226 + 0 NA 3' UTR (NM_025188, exon 6 of 6) 3' UTR (NM_025188, exon 6 of 6) 9594 NM_001145635 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 3147 chr4 75391950 75393493 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR 81906 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 4486 chr9 13112109 13113016 + 0 NA intron (NM_001330637, intron 42 of 46) MIRb|SINE|MIR -139930 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 1424 chr14 65076181 65078555 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR 60748 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 3176 chr4 87374586 87375319 + 0 NA promoter-TSS (NM_002753) promoter-TSS (NM_002753) -669 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 417 chr10 872270 873128 + 0 NA intron (NM_015155, intron 11 of 17) intron (NM_015155, intron 11 of 17) 104946 NM_015155 23185 Hs.159069 NM_015155 ENSG00000107929 LARP4B KIAA0217|LARP5 La ribonucleoprotein domain family member 4B protein-coding 4623 chr9 134069867 134070568 + 0 NA intron (NM_005085, intron 27 of 35) intron (NM_005085, intron 27 of 35) 4715 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 4547 chr9 82303928 82304882 + 0 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) 117717 NR_104239 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 1530 chr14 89764164 89765436 + 0 NA intron (NM_001085471, intron 3 of 6) AluYc|SINE|Alu 118654 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 4388 chr8 118906705 118908188 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 216612 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 2504 chr2 197503015 197503733 + 0 NA promoter-TSS (NM_001080539) promoter-TSS (NM_001080539) -982 NM_001080539 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 3819 chr6 143200147 143201039 + 0 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 65745 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 734 chr11 94987273 94988210 + 0 NA Intergenic Intergenic -22036 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 2798 chr3 319813 320461 + 0 NA intron (NM_006614, intron 2 of 27) intron (NM_006614, intron 2 of 27) -41229 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 2952 chr3 130786709 130787630 + 0 NA intron (NM_001321224, intron 2 of 14) MER5A1|DNA|hAT-Charlie 40597 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 2621 chr20 17399905 17400818 + 0 NA intron (NM_002594, intron 6 of 11) intron (NM_002594, intron 6 of 11) 111653 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 3724 chr6 95935483 95936191 + 0 NA Intergenic Intergenic 89490 NR_104136 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-AS1 - MANEA antisense RNA 1 (head to head) ncRNA 1440 chr14 69820268 69821752 + 0 NA 3' UTR (NM_001168368, exon 15 of 15) 3' UTR (NM_001168368, exon 15 of 15) 44011 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER enhancer of rudimentary homolog (Drosophila) protein-coding 2524 chr2 211308020 211308859 + 0 NA intron (NR_110605, intron 3 of 5) LTR82B|LTR|ERVL 32990 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 381 chr1 211877061 211879546 + 0 NA Intergenic AluSz|SINE|Alu -29331 NM_001204182 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 1471 chr14 78828587 78830794 + 0 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -40384 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1814 chr17 30514317 30515569 + 0 NA intron (NR_110083, intron 8 of 20) Cheshire|DNA|hAT-Charlie -36353 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 2966 chr3 133238755 133240202 + 0 NA Intergenic Intergenic -29488 NR_135277 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 4330 chr8 85165436 85166512 + 0 NA intron (NM_001100391, intron 1 of 8) intron (NM_001100391, intron 1 of 8) 68874 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 373 chr1 209315783 209316594 + 0 NA Intergenic Intergenic -182613 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 3379 chr5 70681786 70682659 + 0 NA TTS (NR_003922) TTS (NR_003922) 10610 NR_003922 5370 Hs.742169 NM_031888 ENSG00000169040 PMCHL2 - pro-melanin concentrating hormone like 2 (pseudogene) pseudo 2078 chr19 18836536 18837378 + 0 NA intron (NM_001098482, intron 1 of 14) L1M5|LINE|L1 42532 NM_001098482 23373 Hs.371096 NM_015321 ENSG00000105662 CRTC1 MECT1|TORC-1|TORC1|WAMTP1 CREB regulated transcription coactivator 1 protein-coding 773 chr11 115175151 115176176 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -28633 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 1247 chr13 101357379 101358383 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR -2698 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 1752 chr16 53984200 53985259 + 0 NA intron (NM_001080432, intron 8 of 8) intron (NM_001080432, intron 8 of 8) -88576 NR_103838 100505692 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 1309 chr13 114940503 114941548 + 0 NA Intergenic Intergenic -42927 NM_007368 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 1576 chr15 31208429 31209494 + 0 NA intron (NM_014967, intron 5 of 14) L2b|LINE|L2 12885 NM_014967 22909 Hs.584863 NM_014967 ENSG00000198690 FAN1 KIAA1018|KMIN|MTMR15|hFAN1 FANCD2 and FANCI associated nuclease 1 protein-coding 3448 chr5 131730088 131731126 + 0 NA 3' UTR (NM_003060, exon 10 of 10) 3' UTR (NM_003060, exon 10 of 10) -15858 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 4508 chr9 27828783 27829535 + 0 NA Intergenic Intergenic -255295 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENNL72|FTDALS|FTDALS1 chromosome 9 open reading frame 72 protein-coding 2874 chr3 93800892 93802155 + 0 NA intron (NM_022072, intron 2 of 5) Helitron3Na_Mam|RC|Helitron -19456 NM_001195643 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 1622 chr15 63091044 63091933 + 0 NA intron (NM_015059, intron 45 of 55) MIRb|SINE|MIR -24668 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 3685 chr6 53697953 53698790 + 0 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 38593 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 4457 chr9 2286823 2287576 + 0 NA Intergenic Intergenic 128743 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 975 chr12 94203293 94204262 + 0 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -72178 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 3605 chr6 21188341 21189790 + 0 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 323058 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1911 chr17 74593211 74594270 + 0 NA Intergenic Intergenic -11595 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 2856 chr3 61701219 61701850 + 0 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 154291 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase, receptor type G protein-coding 2199 chr2 31542060 31542919 + 0 NA Intergenic L1ME4a|LINE|L1 85609 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 3709 chr6 81371239 81371973 + 0 NA Intergenic Intergenic 555279 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 3002 chr3 154447657 154448826 + 0 NA Intergenic Intergenic -300737 NM_001038705 344758 Hs.688231 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10 G protein-coupled receptor 149 protein-coding 4173 chr7 141330210 141331208 + 0 NA intron (NM_018238, intron 9 of 15) L2b|LINE|L2 71244 NM_001080392 57189 Hs.521240 NM_001080392 ENSG00000257093 KIAA1147 LCHN|PRO2561 KIAA1147 protein-coding 3113 chr4 26332531 26333771 + 0 NA intron (NM_015874, intron 1 of 10) intron (NM_015874, intron 1 of 10) 10722 NM_203284 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 1893 chr17 64441086 64441850 + 0 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -28496 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 1646 chr15 79864826 79865485 + 0 NA Intergenic Intergenic 140297 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 KIAA1024 - KIAA1024 protein-coding 3010 chr3 158998119 158999001 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) -1875 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 746 chr11 109544214 109544948 + 0 NA Intergenic LTR82A|LTR|ERVL 251735 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 534 chr10 122533488 122534154 + 0 NA intron (NR_033850, intron 2 of 2) intron (NR_033850, intron 2 of 2) -76866 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 3572 chr6 14542813 14544021 + 0 NA Intergenic MIRb|SINE|MIR -257732 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 4286 chr8 41341783 41343056 + 0 NA Intergenic MER45A|DNA|hAT-Tip100 -5662 NM_016099 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 3690 chr6 58773621 58780218 + 0 NA Intergenic ALR/Alpha|Satellite|centr -489195 NR_132996 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 744 chr11 109179179 109180389 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -113062 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 151 chr1 78436723 78437415 + 0 NA intron (NM_001303433, intron 1 of 20) intron (NM_001303433, intron 1 of 20) -7773 NM_001317101 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 3822 chr6 149255225 149257209 + 0 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 29603 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 1952 chr18 22819479 22821019 + 0 NA intron (NM_015461, intron 3 of 7) intron (NM_015461, intron 3 of 7) 111965 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 4562 chr9 92301830 92302616 + 0 NA intron (NR_024280, intron 3 of 5) intron (NR_024280, intron 3 of 5) 47525 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 287 chr1 168882674 168883604 + 0 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 126960 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 475 chr10 77700581 77701847 + 0 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 158695 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 C10orf11 CDA017 chromosome 10 open reading frame 11 protein-coding 932 chr12 67436490 67437213 + 0 NA Intergenic Intergenic 53213 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 2595 chr20 8310769 8311471 + 0 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 81769 NR_046809 100874337 Hs.662218 NR_046809 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 3908 chr7 29322365 29323207 + 0 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -74200 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 3858 chr6 168618400 168619584 + 0 NA Intergenic Charlie23a|DNA|hAT-Charlie 8205 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 1525 chr14 89264255 89265143 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -5603 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2 echinoderm microtubule associated protein like 5 protein-coding 515 chr10 101773877 101774734 + 0 NA Intergenic L2a|LINE|L2 -4595 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 4047 chr7 105322550 105323436 + 0 NA intron (NM_020725, intron 3 of 11) L1MB5|LINE|L1 -3345 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 2545 chr2 223617741 223618822 + 0 NA Intergenic Intergenic 81824 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 2761 chr21 45478888 45480473 + 0 NA intron (NM_003274, intron 6 of 22) L1MC4a|LINE|L1 47474 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 1107 chr12 129555843 129556546 + 0 NA TTS (NM_133448) TTS (NM_133448) -38041 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 138 chr1 67929226 67931016 + 0 NA Intergenic L2b|LINE|L2 -33998 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 2996 chr3 142423787 142424649 + 0 NA intron (NM_001172312, intron 14 of 15) intron (NM_001172312, intron 14 of 15) -19048 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 3499 chr5 153457146 153458423 + 0 NA Intergenic MIRb|SINE|MIR 39265 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibrillar associated protein 3 protein-coding 3838 chr6 157128865 157129841 + 0 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -28488 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 724 chr11 92628020 92629199 + 0 NA 3' UTR (NM_001008781, exon 25 of 25) 3' UTR (NM_001008781, exon 25 of 25) 20185 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 4104 chr7 126354827 126355808 + 0 NA intron (NR_028041, intron 6 of 10) Tigger2b_Pri|DNA|TcMar-Tigger 342921 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 3598 chr6 20709241 20710259 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 175062 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 3534 chr5 160805444 160806368 + 0 NA intron (NM_021911, intron 6 of 10) intron (NM_021911, intron 6 of 10) 169224 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 - gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 3958 chr7 68130710 68132200 + 0 NA Intergenic Intergenic 646215 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 1195 chr13 71977836 71978626 + 0 NA Intergenic Intergenic 388958 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 3831 chr6 153466468 153467292 + 0 NA Intergenic L1PBa|LINE|L1 -14491 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G-protein signaling 17 protein-coding 1327 chr14 29159223 29160075 + 0 NA Intergenic Intergenic 74876 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 2192 chr2 29546585 29547364 + 0 NA intron (NM_004304, intron 6 of 28) intron (NM_004304, intron 6 of 28) 151269 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 4655 chrX 3953078 3953517 + 0 NA Intergenic Intergenic -191362 NR_034031 389906 Hs.636199 NM_001045547 LOC389906 - zinc finger protein 839 pseudogene pseudo 2667 chr20 49520342 49521417 + 0 NA intron (NM_181442, intron 1 of 3) AluJr|SINE|Alu 5449 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 1995 chr18 42033199 42034049 + 0 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 78038 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 333 chr1 202427561 202428537 + 0 NA intron (NM_001331029, intron 14 of 24) intron (NM_001331029, intron 14 of 24) -3822 NM_032104 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 4080 chr7 115368244 115369366 + 0 NA Intergenic Intergenic 239562 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 4040 chr7 97108329 97109087 + 0 NA Intergenic Intergenic -252563 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 4427 chr8 132911862 132912828 + 0 NA Intergenic Intergenic -3990 NR_136615 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 4451 chr8 144260512 144261478 + 0 NA Intergenic MER51E|LTR|ERV1 -18942 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 complex, locus H protein-coding 3985 chr7 74041752 74043033 + 0 NA Intergenic Intergenic -29599 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 2780 chr22 31343035 31343999 + 0 NA intron (NM_014941, intron 6 of 26) intron (NM_014941, intron 6 of 26) 20756 NM_001303256 22880 Hs.555918 NM_014941 ENSG00000133422 MORC2 CMT2Z|ZCW3|ZCWCC1 MORC family CW-type zinc finger 2 protein-coding 446 chr10 34186227 34187284 + 0 NA Intergenic Intergenic -125147 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 3901 chr7 27339213 27339911 + 0 NA Intergenic Intergenic -52714 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 2181 chr2 24882610 24883403 + 0 NA intron (NM_147223, intron 3 of 21) intron (NM_147223, intron 3 of 21) 75660 NM_147223 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 2229 chr2 44304711 44305495 + 0 NA Intergenic Intergenic -81959 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 1582 chr15 33446678 33447492 + 0 NA exon (NM_001277314, exon 4 of 5) exon (NM_001277314, exon 4 of 5) 39849 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 2842 chr3 54870462 54871436 + 0 NA intron (NM_018398, intron 14 of 37) intron (NM_018398, intron 14 of 37) 64333 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 1599 chr15 54268946 54269582 + 0 NA Intergenic Intergenic -1113 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 2306 chr2 68148825 68150036 + 0 NA Intergenic Intergenic -96736 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 3013 chr3 159600389 159601721 + 0 NA intron (NM_001197113, intron 6 of 10) intron (NM_001197113, intron 6 of 10) 43405 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 1149 chr13 37127133 37128272 + 0 NA Intergenic Intergenic -120347 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 2900 chr3 110997774 110998759 + 0 NA Intergenic L2c|LINE|L2 207251 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 2283 chr2 59259305 59260390 + 0 NA intron (NR_033873, intron 11 of 13) intron (NR_033873, intron 11 of 13) -184996 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 2603 chr20 10278111 10279631 + 0 NA intron (NM_001322905, intron 7 of 8) MER5B|DNA|hAT-Charlie -78717 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 2407 chr2 133523876 133524661 + 0 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -95116 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 2695 chr21 10806709 10807522 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 183828 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 1238 chr13 99951810 99952868 + 0 NA intron (NM_004951, intron 1 of 1) intron (NM_004951, intron 1 of 1) 7410 NM_004951 1880 Hs.784 NM_004951 ENSG00000169508 GPR183 EBI2|hEBI2 G protein-coupled receptor 183 protein-coding 1559 chr14 100535194 100536351 + 0 NA intron (NM_016337, intron 1 of 13) intron (NM_016337, intron 1 of 13) 4021 NM_016337 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 2866 chr3 77101192 77101935 + 0 NA intron (NM_002942, intron 1 of 25) intron (NM_002942, intron 1 of 25) 12269 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1793 chr16 84553652 84555301 + 0 NA Intergenic Intergenic -16188 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 TLDC1 KIAA1609 TBC/LysM-associated domain containing 1 protein-coding 7 chr1 5524005 5525499 + 0 NA Intergenic Intergenic -99379 NR_039612 100616489 NR_039612 ENSG00000264341 MIR4417 mir-4417 microRNA 4417 ncRNA 1701 chr16 12415035 12415818 + 0 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 344835 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 2443 chr2 151863396 151865021 + 0 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 254181 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 1937 chr18 10830727 10831604 + 0 NA intron (NM_022068, intron 7 of 51) L1MA3|LINE|L1 -71518 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 4688 chrX 61729013 61730542 + 0 NA Intergenic ALR/Alpha|Satellite|centr 841441 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 255 chr1 162248598 162249458 + 0 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) -63308 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 2230 chr2 46039920 46040968 + 0 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 161401 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 4274 chr8 32642568 32643254 + 0 NA Intergenic LTR88b|LTR|Gypsy? 63640 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 4740 chrY 13842547 13842922 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 690655 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 182 chr1 94174260 94175372 + 0 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -27422 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 3422 chr5 111076984 111078015 + 0 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 14449 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 4146 chr7 133359151 133359857 + 0 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 150137 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 3809 chr6 135977985 135979542 + 0 NA intron (NR_026805, intron 2 of 3) intron (NR_026805, intron 2 of 3) 159824 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 815 chr11 123667384 123668322 + 0 NA Intergenic LTR76|LTR|ERV1 9204 NM_001005325 390261 Hs.557924 NM_001005325 ENSG00000196099 OR6M1 OR11-271 olfactory receptor family 6 subfamily M member 1 protein-coding 3486 chr5 148536463 148537184 + 0 NA intron (NM_014945, intron 2 of 23) intron (NM_014945, intron 2 of 23) 15813 NM_001345860 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 167 chr1 87606986 87608212 + 0 NA intron (NR_026989, intron 2 of 2) intron (NR_026989, intron 2 of 2) 9990 NR_026985 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 692 chr11 76121334 76122427 + 0 NA intron (NR_130990, intron 3 of 3) intron (NR_130990, intron 3 of 3) 29533 NM_001305225 100506127 Hs.503319 NM_001013634 ENSG00000179240 LOC100506127 - putative uncharacterized protein FLJ37770-like protein-coding 1907 chr17 72312071 72312724 + 0 NA Intergenic MIR|SINE|MIR -9954 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 3564 chr6 7143124 7144016 + 0 NA intron (NM_001003700, intron 1 of 11) intron (NM_001003700, intron 1 of 11) 35484 NM_001003699 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 854 chr12 11782832 11783538 + 0 NA Intergenic MER91A|DNA|hAT-Tip100 -19603 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 3120 chr4 41865904 41866730 + 0 NA Intergenic Intergenic 18311 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 3769 chr6 118523947 118525191 + 0 NA intron (NM_001029858, intron 2 of 7) intron (NM_001029858, intron 2 of 7) 117503 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 1174 chr13 49116591 49117700 + 0 NA Intergenic LTR1D|LTR|ERV1 -9753 NM_001286832 1102 Hs.652712 NM_001268 ENSG00000136161 RCBTB2 CHC1L|RLG RCC1 and BTB domain containing protein 2 protein-coding 4023 chr7 84629472 84630808 + 0 NA intron (NM_152754, intron 16 of 16) intron (NM_152754, intron 16 of 16) 121107 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 510 chr10 99745765 99746615 + 0 NA intron (NM_018058, intron 2 of 14) Charlie18a|DNA|hAT-Charlie 44395 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68 cartilage acidic protein 1 protein-coding 393 chr1 229227403 229229108 + 0 NA Intergenic Intergenic 82293 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 3020 chr3 170250144 170251107 + 0 NA intron (NM_020949, intron 1 of 7) intron (NM_020949, intron 1 of 7) 53238 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 658 chr11 46962437 46963096 + 0 NA intron (NM_001278222, intron 1 of 7) intron (NM_001278222, intron 1 of 7) 4526 NR_103472 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 3262 chr4 182210193 182210830 + 0 NA Intergenic Intergenic -130209 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 274 chr1 164229245 164230334 + 0 NA Intergenic Intergenic -298808 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 3550 chr5 175268324 175269059 + 0 NA intron (NM_006650, intron 2 of 4) intron (NM_006650, intron 2 of 4) -29810 NM_001008220 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 4392 chr8 119146313 119147460 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -22828 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 877 chr12 19078989 19079854 + 0 NA Intergenic Intergenic 188376 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line alpha subunit 3 protein-coding 1508 chr14 82533208 82534393 + 0 NA Intergenic Intergenic -444395 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 3034 chr3 173741151 173741849 + 0 NA intron (NM_014932, intron 4 of 6) intron (NM_014932, intron 4 of 6) -102914 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 1771 chr16 69127752 69128319 + 0 NA Intergenic Intergenic -11432 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 1128 chr13 26094089 26094997 + 0 NA intron (NM_016529, intron 2 of 36) L1MA4|LINE|L1 51631 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 2891 chr3 106961344 106962033 + 0 NA intron (NR_028302, intron 1 of 3) L1ME3|LINE|L1 2149 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 4737 chrY 13808323 13809009 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 724723 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 3515 chr5 156895321 156896261 + 0 NA exon (NM_001172292, exon 3 of 5) exon (NM_001172292, exon 3 of 5) -8683 NR_136204 102724404 Hs.570889 NR_136204 ENSG00000251405 LOC102724404 - uncharacterized LOC102724404 ncRNA 4074 chr7 111770906 111771593 + 0 NA intron (NM_014705, intron 1 of 51) intron (NM_014705, intron 1 of 51) 75213 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 1724 chr16 28117797 28119061 + 0 NA intron (NM_001270940, intron 19 of 24) intron (NM_001270940, intron 19 of 24) -43599 NM_001109763 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 1520 chr14 85330600 85331810 + 0 NA Intergenic Intergenic -522414 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 3965 chr7 68697304 68698564 + 0 NA Intergenic Intergenic 364547 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 4056 chr7 107879929 107880811 + 0 NA intron (NM_001037132, intron 1 of 29) intron (NM_001037132, intron 1 of 29) 244 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 303 chr1 178426525 178427548 + 0 NA exon (NM_170692, exon 14 of 18) exon (NM_170692, exon 14 of 18) -55176 NM_001170722 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 250 chr1 156774098 156775016 + 0 NA Intergenic Intergenic -10985 NM_001007792 4914 Hs.406293 NM_002529 ENSG00000198400 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic receptor tyrosine kinase 1 protein-coding 2148 chr2 6694366 6695405 + 0 NA Intergenic LTR86B1|LTR|ERVL 79034 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 614 chr11 21637262 21638247 + 0 NA Intergenic Intergenic -576968 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|TMEM16E anoctamin 5 protein-coding 1765 chr16 68365945 68366892 + 0 NA intron (NM_001184824, intron 4 of 16) intron (NM_001184824, intron 4 of 16) 21401 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 2963 chr3 132870509 132871467 + 0 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 27323 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124 transmembrane protein 108 protein-coding 2959 chr3 131848909 131849666 + 0 NA Intergenic Intergenic -90837 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 130 chr1 60573660 60574605 + 0 NA Intergenic Intergenic -34690 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 1373 chr14 44666523 44667599 + 0 NA Intergenic HAL1|LINE|L1 309438 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 53 chr1 22844303 22845415 + 0 NA intron (NM_001330398, intron 11 of 15) MIRb|SINE|MIR -45136 NM_020526 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 2925 chr3 121968059 121968916 + 0 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 65306 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1 calcium sensing receptor protein-coding 1302 chr13 111817697 111818526 + 0 NA intron (NM_001113511, intron 3 of 19) intron (NM_001113511, intron 3 of 19) 12050 NM_003899 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 2239 chr2 48742307 48743364 + 0 NA TTS (NM_001135629) TTS (NM_001135629) -14229 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L SALF STON1-GTF2A1L readthrough protein-coding 4517 chr9 37324295 37325542 + 0 NA intron (NM_001289121, intron 5 of 8) intron (NM_001289121, intron 5 of 8) -97789 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 3341 chr5 50698089 50698912 + 0 NA Intergenic Intergenic -19334 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 3029 chr3 171362167 171363098 + 0 NA intron (NM_002662, intron 22 of 26) intron (NM_002662, intron 22 of 26) 165652 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 - phospholipase D1 protein-coding 2392 chr2 124947102 124948366 + 0 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 164870 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 4255 chr8 27693562 27694793 + 0 NA intron (NM_001278945, intron 1 of 7) L2a|LINE|L2 1435 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 3587 chr6 19440309 19441772 + 0 NA Intergenic Intergenic -9012 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 1879 chr17 55371383 55372951 + 0 NA intron (NM_170721, intron 4 of 9) intron (NM_170721, intron 4 of 9) 37793 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 3313 chr5 11483549 11484737 + 0 NA intron (NR_109988, intron 3 of 21) intron (NR_109988, intron 3 of 21) 104886 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1824 chr17 32068848 32069749 + 0 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 -208519 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 4135 chr7 131959868 131961393 + 0 NA intron (NM_020911, intron 4 of 31) L2a|LINE|L2 15010 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 2917 chr3 117308135 117309115 + 0 NA Intergenic LFSINE_Vert|SINE|SINE 668347 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 2342 chr2 91595068 91600333 + 0 NA Intergenic HSATII|Satellite|Satellite 250275 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 3516 chr5 156902417 156903249 + 0 NA Intergenic MIRb|SINE|MIR -15725 NR_136204 102724404 Hs.570889 NR_136204 ENSG00000251405 LOC102724404 - uncharacterized LOC102724404 ncRNA 832 chr11 134242520 134243593 + 0 NA intron (NM_138342, intron 15 of 19) intron (NM_138342, intron 15 of 19) 38756 NM_054025 27087 Hs.381050 NM_018644 ENSG00000109956 B3GAT1 CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1 beta-1,3-glucuronyltransferase 1 protein-coding 2135 chr2 3451543 3452796 + 0 NA intron (NM_016030, intron 6 of 11) intron (NM_016030, intron 6 of 11) 68723 NM_016030 51112 Hs.252713 NM_016030 ENSG00000171853 TRAPPC12 CGI-87|TTC-15|TTC15 trafficking protein particle complex 12 protein-coding 3916 chr7 30197041 30198113 + 0 NA 3' UTR (NM_152793, exon 3 of 3) 3' UTR (NM_152793, exon 3 of 3) 23025 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 828 chr11 132040290 132041113 + 0 NA intron (NM_001144058, intron 2 of 7) L2a|LINE|L2 -113495 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 276 chr1 164966905 164967819 + 0 NA Intergenic Intergenic -223484 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 1831 chr17 32720144 32721088 + 0 NA Intergenic Intergenic -30364 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 2465 chr2 168549230 168550101 + 0 NA Intergenic Intergenic -125517 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 3949 chr7 61791610 61792413 + 0 NA Intergenic HSATII|Satellite|Satellite 972423 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 3523 chr5 158227812 158228987 + 0 NA intron (NM_001324107, intron 8 of 15) intron (NM_001324107, intron 8 of 15) 298371 NM_001324101 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 4614 chr9 129196285 129196950 + 0 NA intron (NM_033446, intron 7 of 9) intron (NM_033446, intron 7 of 9) -23834 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-protein coding RNA, repressor of NFAT ncRNA 3868 chr7 6334291 6335105 + 0 NA Intergenic Intergenic -22456 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 1404 chr14 59430400 59431162 + 0 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 135775 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 1543 chr14 93722692 93724009 + 0 NA intron (NM_001289133, intron 4 of 8) L2b|LINE|L2 -49891 NM_032490 84520 Hs.20142 NM_032490 ENSG00000170270 GON7 C14orf142|PNAS-127 GON7, KEOPS complex subunit homolog protein-coding 424 chr10 11161909 11163092 + 0 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) -15049 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 4124 chr7 130048641 130049736 + 0 NA intron (NM_001257158, intron 5 of 9) intron (NM_001257158, intron 5 of 9) 28976 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 1402 chr14 59337462 59339811 + 0 NA intron (NR_110547, intron 1 of 5) MIRc|SINE|MIR 43630 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 2402 chr2 130726066 130726920 + 0 NA intron (NR_036537, intron 4 of 5) intron (NR_036537, intron 4 of 5) -10742 NM_032144 84084 Hs.591552 NM_032144 ENSG00000222014 RAB6C WTH3 RAB6C, member RAS oncogene family protein-coding 2986 chr3 139736752 139737973 + 0 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 83335 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1841 chr17 36031441 36032305 + 0 NA Intergenic Intergenic -28380 NM_007010 11056 Hs.590937 NM_007010 ENSG00000278053 DDX52 HUSSY19|ROK1 DExD-box helicase 52 protein-coding 347 chr1 204527125 204530368 + 0 NA Intergenic AluJo|SINE|Alu 43239 NM_001278517 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 3558 chr6 1856292 1857115 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 246022 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 3294 chr5 7629593 7630247 + 0 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 221683 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 4307 chr8 62658107 62659986 + 0 NA Intergenic Intergenic 31699 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 434 chr10 15280456 15281113 + 0 NA intron (NM_001010924, intron 5 of 7) intron (NM_001010924, intron 5 of 7) -70075 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 2586 chr20 5114376 5115346 + 0 NA intron (NM_003818, intron 1 of 12) intron (NM_003818, intron 1 of 12) 7454 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 1184 chr13 52360050 52360886 + 0 NA intron (NM_001031719, intron 4 of 7) intron (NM_001031719, intron 4 of 7) 17830 NM_001031719 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 865 chr12 13823000 13823907 + 0 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -293774 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 3165 chr4 82299398 82300094 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 93336 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 4216 chr8 4463111 4464549 + 0 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 388498 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 4134 chr7 131924071 131925640 + 0 NA intron (NM_020911, intron 5 of 31) intron (NM_020911, intron 5 of 31) -20765 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 4654 chrX 3890274 3891088 + 0 NA Intergenic HERVE_a-int|LTR|ERV1 -128746 NR_034031 389906 Hs.636199 NM_001045547 LOC389906 - zinc finger protein 839 pseudogene pseudo 689 chr11 75135304 75136025 + 0 NA intron (NM_001039548, intron 4 of 5) intron (NM_001039548, intron 4 of 5) 6010 NM_001039548 283212 Hs.292451 NM_173583 ENSG00000149243 KLHL35 - kelch like family member 35 protein-coding 3129 chr4 54493658 54494622 + 0 NA Intergenic Intergenic 35017 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 3929 chr7 39571181 39572096 + 0 NA Intergenic Intergenic -34337 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1D1 C7orf36|GK003 Yae1 domain containing 1 protein-coding 3462 chr5 137973513 137974296 + 0 NA Intergenic Intergenic -62586 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 1116 chr12 130982426 130983720 + 0 NA intron (NM_015347, intron 2 of 18) L2c|LINE|L2 19337 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 4413 chr8 128184472 128185575 + 0 NA Intergenic Intergenic 24849 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLo-6|LINC01245 cancer susceptibility candidate 19 (non-protein coding) ncRNA 2869 chr3 77310795 77312037 + 0 NA intron (NM_001128929, intron 1 of 24) intron (NM_001128929, intron 1 of 24) 164253 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1725 chr16 28166566 28167031 + 0 NA intron (NM_001270940, intron 8 of 24) intron (NM_001270940, intron 8 of 24) 56441 NM_001270940 23214 Hs.460468 NM_015171 ENSG00000169180 XPO6 EXP6|RANBP20 exportin 6 protein-coding 727 chr11 92791199 92793355 + 0 NA Intergenic Intergenic 89488 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 2379 chr2 109248660 109250237 + 0 NA intron (NM_001193484, intron 1 of 9) intron (NM_001193484, intron 1 of 9) 11746 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 4220 chr8 5834866 5835572 + 0 NA Intergenic Intergenic 428850 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 939 chr12 68742820 68743729 + 0 NA Intergenic Intergenic -17113 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 4600 chr9 120107273 120108161 + 0 NA intron (NM_014010, intron 1 of 21) MIR|SINE|MIR 69600 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 2619 chr20 16422117 16423001 + 0 NA intron (NM_001199865, intron 12 of 24) intron (NM_001199865, intron 12 of 24) 131520 NM_024704 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 4095 chr7 125113272 125114273 + 0 NA Intergenic LTR41|LTR|ERVL -209427 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 1670 chr16 5386675 5387314 + 0 NA Intergenic Intergenic -239173 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 2010 chr18 45758960 45760692 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -96146 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 2834 chr3 42129081 42129771 + 0 NA Intergenic Intergenic -3320 NM_001042646 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 MILT1|OIP106 trafficking kinesin protein 1 protein-coding 3342 chr5 51306004 51306826 + 0 NA Intergenic Intergenic -627249 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 4237 chr8 18448678 18449538 + 0 NA intron (NM_015310, intron 12 of 15) L1M3d|LINE|L1 200353 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 1537 chr14 91817130 91818227 + 0 NA intron (NM_001080414, intron 4 of 29) intron (NM_001080414, intron 4 of 29) 66510 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 1127 chr13 25994061 25994798 + 0 NA intron (NM_016529, intron 1 of 36) intron (NM_016529, intron 1 of 36) 48280 NM_016529 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 4415 chr8 128248840 128249628 + 0 NA Intergenic Intergenic -7648 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 894 chr12 32186096 32187018 + 0 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -73628 NM_001003398 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD BICD cargo adaptor 1 protein-coding 1298 chr13 111078841 111079563 + 0 NA intron (NM_001846, intron 6 of 47) intron (NM_001846, intron 6 of 47) 36432 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense RNA 2 protein-coding 3425 chr5 112310604 112311491 + 0 NA Intergenic HAL1|LINE|L1 -1360 NR_038352 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 140 chr1 72246825 72247684 + 0 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) 55441 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 2222 chr2 40587525 40589039 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 69162 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 1900 chr17 71065315 71066268 + 0 NA intron (NM_001159770, intron 3 of 9) intron (NM_001159770, intron 3 of 9) 23062 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP11 solute carrier family 39 member 11 protein-coding 954 chr12 78319134 78319901 + 0 NA intron (NM_014903, intron 1 of 38) intron (NM_014903, intron 1 of 38) 94448 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 3460 chr5 136711589 136712544 + 0 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 122952 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 protein-coding 4524 chr9 66832762 66836007 + 0 NA Intergenic ALR/Alpha|Satellite|centr -88583 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 801 chr11 121994008 121995090 + 0 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) -7626 NM_001001786 414899 Hs.686109 NM_001001786 ENSG00000259571 BLID BRCC2 BH3-like motif containing, cell death inducer protein-coding 985 chr12 97609153 97610004 + 0 NA Intergenic Intergenic -249221 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript (non-protein coding) ncRNA 754 chr11 110951180 110952752 + 0 NA Intergenic Intergenic -174741 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 3151 chr4 77175889 77177413 + 0 NA intron (NM_001242939, intron 1 of 6) MER102b|DNA|hAT-Charlie 3798 NM_001136570 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 3061 chr3 193065839 193066852 + 0 NA intron (NM_198505, intron 7 of 29) intron (NM_198505, intron 7 of 29) 30169 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 1563 chr14 106638691 106639566 + 0 NA Intergenic MER49|LTR|ERV1 -105141 NR_033375 338004 Hs.569411 NR_033375 LINC00226 C14orf97|NCRNA00226 long intergenic non-protein coding RNA 226 ncRNA 1003 chr12 99180210 99180794 + 0 NA intron (NM_001204081, intron 5 of 9) intron (NM_001204081, intron 5 of 9) 108172 NM_001204079 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 4147 chr7 133362713 133363517 + 0 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 146526 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 4355 chr8 94551874 94552797 + 0 NA intron (NR_033858, intron 6 of 10) intron (NR_033858, intron 6 of 10) 160326 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 1800 chr17 2387850 2388938 + 0 NA intron (NM_024086, intron 2 of 9) MER1A|DNA|hAT-Charlie 26806 NM_024086 79066 Hs.632237 NM_024086 ENSG00000127804 METTL16 METT10D methyltransferase like 16 protein-coding 4230 chr8 10986595 10987371 + 0 NA intron (NR_138153, intron 1 of 2) intron (NR_138153, intron 1 of 2) -62384 NR_134308 101929269 Hs.680442 NR_134308 ENSG00000254839 LOC101929269 - uncharacterized LOC101929269 ncRNA 1717 chr16 20872232 20873010 + 0 NA intron (NM_173475, intron 2 of 2) intron (NM_173475, intron 2 of 2) -38569 NM_020424 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 4349 chr8 94363443 94364828 + 0 NA intron (NR_033858, intron 10 of 10) ERVL-E-int|LTR|ERVL -185056 NM_001242668 389676 Hs.386711 NM_001242668 C8orf87 - chromosome 8 open reading frame 87 protein-coding 2557 chr2 230282323 230283432 + 0 NA exon (NM_139072, exon 9 of 13) exon (NM_139072, exon 9 of 13) -146820 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 698 chr11 77985796 77986529 + 0 NA intron (NM_012296, intron 2 of 9) intron (NM_012296, intron 2 of 9) 66764 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 1634 chr15 69904248 69905022 + 0 NA intron (NR_126437, intron 2 of 5) intron (NR_126437, intron 2 of 5) 20096 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000259641 PCAT29 - prostate cancer associated transcript 29 (non-protein coding) ncRNA 524 chr10 114817644 114818480 + 0 NA intron (NM_001146285, intron 4 of 12) intron (NM_001146285, intron 4 of 12) 12948 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 1848 chr17 40062761 40064156 + 0 NA intron (NM_198830, intron 7 of 27) intron (NM_198830, intron 7 of 27) 11814 NM_198830 47 Hs.387567 NM_001096 ENSG00000131473 ACLY ACL|ATPCL|CLATP ATP citrate lyase protein-coding 2176 chr2 16180367 16181315 + 0 NA Intergenic Intergenic -9708 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 2714 chr21 19647653 19648927 + 0 NA intron (NM_002772, intron 23 of 24) intron (NM_002772, intron 23 of 24) 30098 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 4380 chr8 110111368 110112475 + 0 NA intron (NM_003301, intron 1 of 1) intron (NM_003301, intron 1 of 1) 12268 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 4706 chrX 110424868 110425859 + 0 NA intron (NM_001128172, intron 8 of 14) MamSINE1|SINE|tRNA 59058 NM_001128172 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 3418 chr5 107611868 107612795 + 0 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 105468 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 598 chr11 18009694 18010541 + 0 NA intron (NM_012139, intron 8 of 10) intron (NM_012139, intron 8 of 10) 24592 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 2486 chr2 177743979 177744996 + 0 NA Intergenic Intergenic 242005 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 780 chr11 115781947 115783264 + 0 NA Intergenic Intergenic -151687 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 2317 chr2 75042789 75044333 + 0 NA Intergenic L2a|LINE|L2 -16221 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 3277 chr5 1603812 1604797 + 0 NA intron (NR_003713, intron 2 of 3) intron (NR_003713, intron 2 of 3) -9658 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudo 3547 chr5 175247137 175247918 + 0 NA intron (NM_006650, intron 2 of 4) intron (NM_006650, intron 2 of 4) 23917 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 3490 chr5 150891765 150892351 + 0 NA exon (NM_001447, exon 20 of 23) exon (NM_001447, exon 20 of 23) 9651 NR_106752 102465246 NR_106752 ENSG00000276622 MIR6499 hsa-mir-6499|mir-6499 microRNA 6499 ncRNA 1433 chr14 66782032 66783127 + 0 NA Intergenic L1M2a|LINE|L1 -170510 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 LINC00238 C14orf53|NCRNA00238 long intergenic non-protein coding RNA 238 ncRNA 240 chr1 150819537 150820703 + 0 NA intron (NM_001668, intron 3 of 21) intron (NM_001668, intron 3 of 21) 29124 NM_001197325 405 Hs.632446 NM_001668 ENSG00000143437 ARNT HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 aryl hydrocarbon receptor nuclear translocator protein-coding 1666 chr15 99303351 99304249 + 0 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -23855 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 2209 chr2 37728092 37729022 + 0 NA Intergenic Intergenic 156804 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 230 chr1 144009462 144011297 + 0 NA Intergenic Intergenic -95532 NR_144320 728833 Hs.535577 NM_207418 ENSG00000215784 FAM72D GCUD2 family with sequence similarity 72 member D protein-coding 115 chr1 51468083 51469063 + 0 NA Intergenic L2|LINE|L2 32931 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 2374 chr2 108128300 108129709 + 0 NA Intergenic Intergenic -163023 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 922 chr12 59281702 59282477 + 0 NA intron (NM_001136051, intron 7 of 18) intron (NM_001136051, intron 7 of 18) 31238 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 2319 chr2 76938549 76939310 + 0 NA Intergenic L2|LINE|L2 -274162 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 2628 chr20 20191482 20192940 + 0 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) 154921 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 2741 chr21 41423708 41425956 + 0 NA intron (NM_001389, intron 29 of 32) intron (NM_001389, intron 29 of 32) 159526 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 3740 chr6 105768387 105769247 + 0 NA intron (NM_002726, intron 10 of 14) intron (NM_002726, intron 10 of 14) 82182 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 1072 chr12 115601127 115602124 + 0 NA Intergenic Intergenic -479656 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 2470 chr2 171127573 171128372 + 0 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 79481 NR_110576 101929753 Hs.534101 NR_110576 LOC101929753 - uncharacterized LOC101929753 ncRNA 1394 chr14 56993786 56994773 + 0 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 13230 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 2772 chr22 23158576 23159481 + 0 NA Intergenic Charlie6|DNA|hAT-Charlie -6242 NR_030755 723778 NR_030755 ENSG00000278196 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 1277 chr13 106811530 106812298 + 0 NA Intergenic Intergenic -216997 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 2251 chr2 50160549 50161536 + 0 NA intron (NM_001330088, intron 17 of 17) intron (NM_001330088, intron 17 of 17) 40299 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 3456 chr5 136544498 136546114 + 0 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 81420 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 1086 chr12 119659893 119660675 + 0 NA Intergenic Kanga1c|DNA|TcMar-Tc2 43689 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 564 chr11 11404283 11405341 + 0 NA intron (NM_198516, intron 3 of 10) intron (NM_198516, intron 3 of 10) -29908 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 4488 chr9 13952226 13953444 + 0 NA Intergenic Intergenic 24865 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 3070 chr3 197211755 197213279 + 0 NA Intergenic L2b|LINE|L2 70341 NM_203314 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 2562 chr2 235547108 235548178 + 0 NA Intergenic Intergenic -43669 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 3951 chr7 61798168 61798960 + 0 NA Intergenic HSATII|Satellite|Satellite 965870 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 3094 chr4 20455156 20456684 + 0 NA intron (NM_001289136, intron 4 of 35) intron (NM_001289136, intron 4 of 35) 62108 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 1967 chr18 31894893 31896099 + 0 NA Intergenic Intergenic -91981 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 2850 chr3 58567118 58568007 + 0 NA intron (NM_001282714, intron 2 of 4) intron (NM_001282714, intron 2 of 4) -4071 NM_007177 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 657 chr11 42486746 42488132 + 0 NA Intergenic MIR|SINE|MIR -212199 NR_038309 100507205 Hs.99310 NR_038309 LOC100507205 - uncharacterized LOC100507205 ncRNA 1865 chr17 49667297 49668074 + 0 NA Intergenic L2c|LINE|L2 253609 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 1783 chr16 77929975 77930714 + 0 NA intron (NM_020927, intron 7 of 8) MIRb|SINE|MIR 107883 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 4642 chrUn_gl000216 17942 24465 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 503 chr10 94550826 94551487 + 0 NA Intergenic Intergenic -35432 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 4181 chr7 147982285 147982993 + 0 NA intron (NM_014141, intron 21 of 23) MIRb|SINE|MIR -305018 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 4126 chr7 130103709 130104628 + 0 NA Intergenic Intergenic -21848 NM_001253901 4232 Hs.270978 NM_002402 ENSG00000106484 MEST PEG1 mesoderm specific transcript protein-coding 1483 chr14 79236784 79238264 + 0 NA intron (NM_001330195, intron 8 of 20) intron (NM_001330195, intron 8 of 20) 367450 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 4069 chr7 110939798 110940614 + 0 NA intron (NM_001244606, intron 4 of 6) intron (NM_001244606, intron 4 of 6) 209144 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 3800 chr6 125120742 125121844 + 0 NA intron (NM_001300737, intron 6 of 7) intron (NM_001300737, intron 6 of 7) -162398 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 1996 chr18 42432435 42433409 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 117209 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 4695 chrX 70852500 70853742 + 0 NA intron (NR_001568, intron 1 of 3) intron (NR_001568, intron 1 of 3) -14754 NM_001142797 2833 Hs.198252 NM_001504 ENSG00000186810 CXCR3 CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR C-X-C motif chemokine receptor 3 protein-coding 4584 chr9 108639740 108640534 + 0 NA Intergenic Intergenic 183331 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 1036 chr12 106350664 106351357 + 0 NA Intergenic Intergenic 182801 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 3492 chr5 151314197 151315602 + 0 NA Intergenic Intergenic -10502 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 1265 chr13 103293985 103295409 + 0 NA intron (NM_001330588, intron 16 of 29) intron (NM_001330588, intron 16 of 29) 45411 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 2065 chr18 69873468 69874722 + 0 NA Intergenic L4|LINE|RTE 337628 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 4150 chr7 133469143 133469948 + 0 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 40096 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 544 chr10 130652451 130653975 + 0 NA Intergenic Intergenic 568999 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 4696 chrX 71600812 71602102 + 0 NA intron (NR_051952, intron 8 of 9) intron (NR_051952, intron 8 of 9) -74420 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 4370 chr8 102308834 102309612 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR -71898 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 4527 chr9 67320027 67320993 + 0 NA intron (NR_136300, intron 3 of 3) ALR/Alpha|Satellite|centr 30059 NR_136300 102724580 Hs.494013 NR_136300 LOC102724580 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene pseudo 3253 chr4 166329866 166330707 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 22892 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 4634 chr9_gl000199_random 127386 128678 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 1196 chr13 72448448 72449237 + 0 NA Intergenic Intergenic -7512 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 1114 chr12 130796884 130797565 + 0 NA Intergenic Intergenic -25209 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 2389 chr2 122011915 122013552 + 0 NA intron (NM_014553, intron 2 of 14) intron (NM_014553, intron 2 of 14) 30045 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 4497 chr9 14785048 14785796 + 0 NA intron (NM_144966, intron 24 of 37) intron (NM_144966, intron 24 of 37) -5891 NM_001177704 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 3657 chr6 40879232 40880512 + 0 NA intron (NR_110873, intron 1 of 5) MER5B|DNA|hAT-Charlie 111147 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 239 chr1 150358784 150360006 + 0 NA intron (NM_001297674, intron 1 of 9) Tigger2b_Pri|DNA|TcMar-Tigger 22808 NM_001297674 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 122 chr1 56285553 56287359 + 0 NA Intergenic Intergenic 595142 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 2635 chr20 21214649 21216046 + 0 NA intron (NM_018474, intron 12 of 13) intron (NM_018474, intron 12 of 13) -16420 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 878 chr12 19143578 19146061 + 0 NA Intergenic Intergenic -137807 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 269 chr1 163795235 163796320 + 0 NA Intergenic Intergenic -402796 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 363 chr1 207006866 207007757 + 0 NA 5' UTR (NM_013371, exon 2 of 7) 5' UTR (NM_013371, exon 2 of 7) 5089 NM_013371 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 2277 chr2 58996722 58997809 + 0 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 249377 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 4264 chr8 29186267 29186951 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR 19713 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 4573 chr9 98030772 98031441 + 0 NA intron (NM_000136, intron 1 of 14) intron (NM_000136, intron 1 of 14) 48430 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC Fanconi anemia complementation group C protein-coding 2353 chr2 97610537 97611411 + 0 NA intron (NM_001122646, intron 8 of 16) intron (NM_001122646, intron 8 of 16) 26131 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 4140 chr7 132463789 132464568 + 0 NA Intergenic Intergenic 20448 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 3198 chr4 106112402 106114242 + 0 NA intron (NM_001127208, intron 2 of 10) intron (NM_001127208, intron 2 of 10) 45480 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 3215 chr4 129767909 129768710 + 0 NA intron (NM_001287437, intron 4 of 10) intron (NM_001287437, intron 4 of 10) 35310 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 2159 chr2 11152105 11153058 + 0 NA Intergenic Intergenic 100518 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 3059 chr3 188694923 188695738 + 0 NA Intergenic L2c|LINE|L2 -29902 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 4725 chrX 131427879 131428859 + 0 NA intron (NR_110410, intron 2 of 2) intron (NR_110410, intron 2 of 2) -74861 NM_001271187 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 1449 chr14 71999029 71999866 + 0 NA intron (NM_015556, intron 1 of 21) intron (NM_015556, intron 1 of 21) 3418 NM_001284245 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1 signal induced proliferation associated 1 like 1 protein-coding 4538 chr9 78226856 78228285 + 0 NA intron (NR_031679, intron 2 of 2).2 intron (NR_031679, intron 2 of 2).2 111174 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 2873 chr3 81872881 81873595 + 0 NA Intergenic Intergenic -62288 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 4062 chr7 108290959 108292246 + 0 NA Intergenic Intergenic -81390 NM_001287599 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 1314 chr14 21894922 21896741 + 0 NA intron (NM_001170629, intron 3 of 36) intron (NM_001170629, intron 3 of 36) 4036 NM_001170629 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 3591 chr6 19849763 19850720 + 0 NA Intergenic AluJr|SINE|Alu 12640 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 2748 chr21 42104348 42105475 + 0 NA intron (NM_001389, intron 1 of 32) intron (NM_001389, intron 1 of 32) -102218 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 1798 chr17 2338418 2340536 + 0 NA intron (NM_024086, intron 8 of 9) intron (NM_024086, intron 8 of 9) -20747 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 2535 chr2 217916331 217917041 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 181191 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 522 chr10 112889021 112889569 + 0 NA Intergenic Intergenic 52505 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 1632 chr15 69819749 69820341 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -34014 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 1423 chr14 64596160 64597312 + 0 NA intron (NM_182914, intron 75 of 115) intron (NM_182914, intron 75 of 115) -34893 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 2412 chr2 135311710 135312959 + 0 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 164237 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 3352 chr5 51932957 51934260 + 0 NA Intergenic Intergenic -150166 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 667 chr11 51578576 51579910 + 0 NA Intergenic ALR/Alpha|Satellite|centr 63961 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 1280 chr13 107249914 107250669 + 0 NA Intergenic LTR78|LTR|ERV1 -19867 NR_051977 283483 Hs.651365 NR_051977 ENSG00000272274 LINC00551 - long intergenic non-protein coding RNA 551 ncRNA 313 chr1 181715648 181716711 + 0 NA intron (NM_001205294, intron 24 of 45) intron (NM_001205294, intron 24 of 45) 263493 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 2017 chr18 48154683 48156829 + 0 NA intron (NM_001292039, intron 1 of 4) intron (NM_001292039, intron 1 of 4) 69272 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 4322 chr8 81243710 81244635 + 0 NA Intergenic Intergenic 90548 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 4031 chr7 92988569 92989773 + 0 NA 3' UTR (NM_017667, exon 28 of 28) 3' UTR (NM_017667, exon 28 of 28) 122996 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 3023 chr3 170267440 170268727 + 0 NA intron (NM_020949, intron 1 of 7) MER20B|DNA|hAT-Charlie 35780 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 2661 chr20 47298907 47299670 + 0 NA intron (NM_020820, intron 10 of 39) intron (NM_020820, intron 10 of 39) 145132 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 2884 chr3 100139564 100140374 + 0 NA intron (NM_001085451, intron 1 of 3) AluJb|SINE|Alu -19727 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 3841 chr6 157723146 157724153 + 0 NA intron (NM_018452, intron 3 of 3) intron (NM_018452, intron 3 of 3) 21642 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 1324 chr14 27510302 27512108 + 0 NA Intergenic Intergenic 133357 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 3077 chr4 6034396 6035233 + 0 NA intron (NM_001099433, intron 19 of 20) intron (NM_001099433, intron 19 of 20) -109759 NR_039608 100616201 NR_039608 ENSG00000263631 MIR378D1 mir-378d-1 microRNA 378d-1 ncRNA 3305 chr5 8683439 8684223 + 0 NA Intergenic Intergenic -156013 NR_109932 101929284 Hs.403715 NR_109932 LOC101929284 - uncharacterized LOC101929284 ncRNA 3433 chr5 123037247 123038525 + 0 NA Intergenic Intergenic 156775 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 4202 chr8 1020800 1021686 + 0 NA intron (NM_001346810, intron 2 of 14) intron (NM_001346810, intron 2 of 14) 229580 NR_111948 286083 Hs.382131 NR_033895 ENSG00000275427 LOC286083 - uncharacterized LOC286083 ncRNA 459 chr10 43640592 43641310 + 0 NA intron (NR_135077, intron 1 of 8) AluJr|SINE|Alu 7058 NM_018590 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 3477 chr5 143810542 143811447 + 0 NA intron (NM_020768, intron 3 of 3) intron (NM_020768, intron 3 of 3) 260557 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 4267 chr8 31248885 31249836 + 0 NA Intergenic Intergenic -247908 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 3715 chr6 90685135 90686194 + 0 NA intron (NM_021813, intron 6 of 8) intron (NM_021813, intron 6 of 8) 81476 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 1495 chr14 80365268 80366220 + 0 NA Intergenic MLT1G3|LTR|ERVL-MaLR -312018 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 1753 chr16 56052437 56053424 + 0 NA Intergenic MamRep605|Unknown|Unknown -62987 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 3187 chr4 94020532 94021403 + 0 NA intron (NM_001510, intron 3 of 15) intron (NM_001510, intron 3 of 15) -729111 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 2688 chr21 10704466 10706162 + 0 NA Intergenic ALR/Alpha|Satellite|centr 285629 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 4367 chr8 102183954 102185532 + 0 NA Intergenic Intergenic 33217 NM_001042510 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 1938 chr18 10852213 10853471 + 0 NA intron (NM_022068, intron 7 of 51) MER50|LTR|ERV1 -93195 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 1919 chr18 106400 111242 + 0 NA promoter-TSS (NR_033770) promoter-TSS (NR_033770) -244 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 - Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 2756 chr21 43882375 43883188 + 0 NA Intergenic Intergenic 33683 NM_001286506 89765 Hs.661069 NM_080860 ENSG00000160188 RSPH1 CT79|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head 1 homolog protein-coding 4244 chr8 20453047 20454195 + 0 NA Intergenic Intergenic 320337 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 3107 chr4 25515219 25516142 + 0 NA Intergenic Intergenic 55288 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 3441 chr5 124532146 124532831 + 0 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 159964 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 404 chr1 234879507 234880906 + 0 NA Intergenic Intergenic 20417 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 516 chr10 104199691 104201189 + 0 NA Intergenic AluSc8|SINE|Alu 4171 NR_030169 574447 NR_030169 ENSG00000202569 MIR146B MIRN146B|miRNA146B|mir-146b microRNA 146b ncRNA 2004 chr18 43036135 43037024 + 0 NA intron (NR_110899, intron 6 of 7) intron (NR_110899, intron 6 of 7) 50422 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 1813 chr17 29572061 29572840 + 0 NA intron (NM_001042492, intron 29 of 57) MER21B|LTR|ERVL 51930 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 3861 chr6 170561870 170562979 + 0 NA TTS (NR_002787) TTS (NR_002787) 9233 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 702 chr11 78633612 78634733 + 0 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -348263 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 4383 chr8 110676113 110677163 + 0 NA intron (NM_001099744, intron 1 of 7) intron (NM_001099744, intron 1 of 7) -15506 NM_001099749 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 2297 chr2 66305017 66305875 + 0 NA Intergenic Intergenic 280014 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 2163 chr2 11537055 11537903 + 0 NA intron (NR_047499, intron 1 of 2) ERV3-16A3_I-int|LTR|ERVL 3372 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 2214 chr2 40243004 40244148 + 0 NA intron (NR_038441, intron 2 of 4) L4|LINE|RTE 98802 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 357 chr1 206560516 206561924 + 0 NA intron (NM_001170637, intron 2 of 19) intron (NM_001170637, intron 2 of 19) 3853 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 4679 chrX 20550643 20551564 + 0 NA Intergenic MIRb|SINE|MIR -266353 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 3236 chr4 141949042 141950036 + 0 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 105077 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 1941 chr18 11204896 11205611 + 0 NA Intergenic MIRb|SINE|MIR -56492 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 4008 chr7 80462371 80463841 + 0 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 85561 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 2826 chr3 36915567 36916396 + 0 NA intron (NM_001329998, intron 8 of 23) intron (NM_001329998, intron 8 of 23) 70567 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 455 chr10 42404284 42405089 + 0 NA Intergenic ALR/Alpha|Satellite|centr 458807 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 4472 chr9 8095223 8096836 + 0 NA Intergenic Intergenic -296223 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 TMEM261 C9orf123 transmembrane protein 261 protein-coding 2132 chr2 2994966 2995649 + 0 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 134491 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 3181 chr4 90678314 90679125 + 0 NA intron (NM_000345, intron 4 of 5) intron (NM_000345, intron 4 of 5) -78833 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 2612 chr20 12586202 12586970 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 331025 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 3751 chr6 110435001 110435880 + 0 NA intron (NM_001024934, intron 3 of 9) Tigger2|DNA|TcMar-Tigger 65767 NM_001024935 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WAS protein family member 1 protein-coding 1889 chr17 59285820 59286908 + 0 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 158701 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 2272 chr2 55196539 55197286 + 0 NA intron (NM_001039753, intron 40 of 40) intron (NM_001039753, intron 40 of 40) 40558 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 2692 chr21 10760255 10762401 + 0 NA Intergenic ALR/Alpha|Satellite|centr 229615 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 2646 chr20 36596967 36597847 + 0 NA Intergenic L1PB1|LINE|L1 64463 NM_014657 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 10 chr1 6956386 6957168 + 0 NA intron (NM_015215, intron 3 of 22) intron (NM_015215, intron 3 of 22) 111393 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 550 chr10 133649023 133649965 + 0 NA Intergenic Intergenic -26959 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 2083 chr19 29799222 29800456 + 0 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -95703 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1081 chr12 118021370 118022127 + 0 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -222141 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 1736 chr16 47998533 48000240 + 0 NA Intergenic Intergenic -78345 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 958 chr12 79394892 79395804 + 0 NA intron (NM_001291901, intron 2 of 9) intron (NM_001291901, intron 2 of 9) -44085 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 592 chr11 15826960 15828062 + 0 NA Intergenic Intergenic 162080 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 3299 chr5 7941789 7943071 + 0 NA Intergenic Intergenic 73213 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 4420 chr8 129533651 129534399 + 0 NA intron (NR_121672, intron 2 of 7) MLT1F2|LTR|ERVL-MaLR 42900 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 4111 chr7 127583387 127584556 + 0 NA intron (NM_014390, intron 15 of 23) intron (NM_014390, intron 15 of 23) -53591 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 1978 chr18 35526271 35527109 + 0 NA Intergenic Intergenic 289592 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 2364 chr2 100103379 100104504 + 0 NA intron (NR_135653, intron 1 of 21) intron (NR_135653, intron 1 of 21) 2577 NM_016316 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 1640 chr15 73672119 73672873 + 0 NA Intergenic MER67A|LTR|ERV1 -10891 NM_005477 10021 Hs.86941 NM_005477 ENSG00000138622 HCN4 SSS2 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding 4118 chr7 129936972 129937857 + 0 NA intron (NM_001163446, intron 1 of 9) intron (NM_001163446, intron 1 of 9) 4440 NM_016352 51200 Hs.93764 NM_016352 ENSG00000128510 CPA4 CPA3 carboxypeptidase A4 protein-coding 173 chr1 89969094 89970102 + 0 NA Intergenic Intergenic -20799 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 family member B protein-coding 66 chr1 30351044 30352155 + 0 NA Intergenic Intergenic 158860 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 2709 chr21 18800221 18801206 + 0 NA Intergenic AluSx|SINE|Alu -10495 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 2026 chr18 54125918 54126642 + 0 NA Intergenic Intergenic 179640 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 3130 chr4 55350094 55351202 + 0 NA Intergenic Intergenic 122650 NR_134657 339978 NR_134657 ENSG00000250456 LOC339978 - uncharacterized LOC339978 ncRNA 793 chr11 121222870 121224409 + 0 NA Intergenic Intergenic 60062 NM_001024956 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 1205 chr13 79567618 79568537 + 0 NA Intergenic Intergenic -153892 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 1696 chr16 10356797 10358001 + 0 NA Intergenic Intergenic -80788 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 3168 chr4 82556577 82557404 + 0 NA Intergenic Intergenic -163908 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 3674 chr6 46795335 46796129 + 0 NA intron (NM_005588, intron 9 of 13) intron (NM_005588, intron 9 of 13) 34638 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 3469 chr5 138567357 138568295 + 0 NA Intergenic MER61E|LTR|ERV1 -33761 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 3625 chr6 24859465 24860520 + 0 NA intron (NM_001346031, intron 8 of 21) intron (NM_001346031, intron 8 of 21) 17601 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 FAM65B C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65 member B protein-coding 59 chr1 25523789 25524830 + 0 NA Intergenic Intergenic 34704 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 4728 chrX 149831280 149832138 + 0 NA intron (NM_000252, intron 13 of 14) intron (NM_000252, intron 13 of 14) -30128 NM_001306144 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 4572 chr9 97503846 97504418 + 0 NA intron (NM_032823, intron 1 of 14) MLT1I|LTR|ERVL-MaLR 15181 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 C9orf3 AOPEP|AP-O|APO|C90RF3|ONPEP chromosome 9 open reading frame 3 protein-coding 4546 chr9 81962906 81963684 + 0 NA Intergenic L2a|LINE|L2 -202714 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 3388 chr5 73468699 73469491 + 0 NA Intergenic LTR85c|LTR|Gypsy? 135055 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 2091 chr19 33226790 33227722 + 0 NA intron (NM_001110822, intron 2 of 12) FLAM_A|SINE|Alu 16577 NM_001110822 91646 Hs.646351 NM_001015890 ENSG00000173809 TDRD12 ECAT8 tudor domain containing 12 protein-coding 3329 chr5 43214832 43215910 + 0 NA intron (NR_072980, intron 1 of 3) intron (NR_072980, intron 1 of 3) 22417 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 4161 chr7 139179386 139180455 + 0 NA Intergenic Intergenic -11463 NM_198508 346689 Hs.17572 NM_198508 ENSG00000188883 KLRG2 CLEC15B killer cell lectin like receptor G2 protein-coding 1971 chr18 33655496 33657425 + 0 NA Intergenic MER101|LTR|ERV1 -8903 NM_001303413 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 2358 chr2 98356965 98358231 + 0 NA Intergenic LTR14B|LTR|ERVK 6729 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 1226 chr13 98281669 98282409 + 0 NA Intergenic Intergenic 195564 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 1949 chr18 19265261 19266435 + 0 NA intron (NM_138340, intron 3 of 8) AluSz|SINE|Alu 2377 NR_031565 100302135 NR_031565 ENSG00000221493 MIR320C1 MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1 microRNA 320c-1 ncRNA 1256 chr13 102680660 102682016 + 0 NA intron (NM_001321945, intron 2 of 5) intron (NM_001321945, intron 2 of 5) 17016 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 2498 chr2 183558819 183559587 + 0 NA Intergenic LTR40c|LTR|ERVL -21565 NR_073365 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 2247 chr2 49611046 49612111 + 0 NA Intergenic Intergenic -229912 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 1853 chr17 43690942 43691976 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -6236 NR_138259 147081 Hs.128813 NM_152466 ENSG00000204650 CRHR1-IT1 C17orf69|MGC57346 CRHR1 intronic transcript 1 ncRNA 1016 chr12 103727357 103730016 + 0 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 161102 NR_103526 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 219 chr1 117498744 117499657 + 0 NA intron (NM_020440, intron 4 of 8) intron (NM_020440, intron 4 of 8) -45172 NM_004258 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 2300 chr2 66588711 66590659 + 0 NA Intergenic Intergenic -4225 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 2480 chr2 176296610 176297305 + 0 NA Intergenic Intergenic -250467 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5G3 P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) protein-coding 799 chr11 121800067 121801278 + 0 NA Intergenic Intergenic 169880 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 3734 chr6 101927718 101928342 + 0 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 81169 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 925 chr12 62999291 63000308 + 0 NA Intergenic Intergenic 2333 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 390 chr1 226616098 226617206 + 0 NA Intergenic Intergenic -20851 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 1515 chr14 83371645 83373048 + 0 NA Intergenic Intergenic -1282941 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 2368 chr2 101248275 101249447 + 0 NA Intergenic Intergenic 69443 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 3357 chr5 58444990 58445718 + 0 NA intron (NM_001165899, intron 7 of 16) intron (NM_001165899, intron 7 of 16) -110015 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1955 chr18 25297245 25298679 + 0 NA Intergenic Charlie23a|DNA|hAT-Charlie 318587 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 945 chr12 77060105 77060916 + 0 NA Intergenic Intergenic -97344 NM_015336 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 2784 chr22 35853941 35855349 + 0 NA Intergenic MIRc|SINE|MIR 58529 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 206 chr1 113601434 113603124 + 0 NA intron (NR_103777, intron 1 of 2) intron (NR_103777, intron 1 of 2) 13445 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LOC100996251 - uncharacterized LOC100996251 ncRNA 959 chr12 79578755 79579654 + 0 NA intron (NM_001135806, intron 2 of 9) intron (NM_001135806, intron 2 of 9) 139771 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 3791 chr6 124397208 124398258 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) -206418 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 3194 chr4 99031221 99033014 + 0 NA intron (NM_174952, intron 3 of 10) intron (NM_174952, intron 3 of 10) 32274 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 331 chr1 202038424 202039253 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -53191 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 358 chr1 206588933 206590399 + 0 NA intron (NM_001170637, intron 8 of 19) intron (NM_001170637, intron 8 of 19) 32299 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 2746 chr21 41909280 41910543 + 0 NA intron (NM_001389, intron 3 of 32) intron (NM_001389, intron 3 of 32) 92782 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 3606 chr6 21201570 21202682 + 0 NA intron (NM_017774, intron 15 of 15) intron (NM_017774, intron 15 of 15) 309997 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 737 chr11 95110045 95110964 + 0 NA Intergenic Intergenic -144799 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 4338 chr8 90715502 90716318 + 0 NA Intergenic L1PBb|LINE|L1 54029 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 2228 chr2 44131747 44132999 + 0 NA intron (NM_133259, intron 31 of 37) intron (NM_133259, intron 31 of 37) 66270 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 3037 chr3 174905160 174906430 + 0 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -72763 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 2070 chr19 3893110 3894235 + 0 NA intron (NM_033064, intron 2 of 12) intron (NM_033064, intron 2 of 12) 13054 NM_033064 85300 Hs.418055 NM_033064 ENSG00000167654 ATCAY BNIP-H|CLAC ATCAY, caytaxin protein-coding 4112 chr7 127601321 127602417 + 0 NA intron (NM_014390, intron 15 of 23) intron (NM_014390, intron 15 of 23) -35693 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 3830 chr6 151299302 151300106 + 0 NA intron (NM_015440, intron 20 of 27) intron (NM_015440, intron 20 of 27) 112235 NM_001242768 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 4336 chr8 90427212 90428562 + 0 NA Intergenic Intergenic 342052 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 220 chr1 117636519 117637695 + 0 NA promoter-TSS (NR_030640) promoter-TSS (NR_030640) -158 NR_030640 100126331 NR_030640 ENSG00000215930 MIR942 MIRN942|hsa-mir-942|mir-942 microRNA 942 ncRNA 1312 chr14 20889163 20890551 + 0 NA Intergenic Intergenic -8278 NM_001319035 7011 Hs.508835 NM_007110 ENSG00000129566 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase associated protein 1 protein-coding 4473 chr9 8401411 8402601 + 0 NA intron (NM_001040712, intron 20 of 29) intron (NM_001040712, intron 20 of 29) 331940 NM_001171025 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type D protein-coding 2365 chr2 100124062 100125378 + 0 NA Intergenic MER110-int|LTR|ERV1 -18202 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 1263 chr13 103236633 103237607 + 0 NA Intergenic L2|LINE|L2 -12166 NM_001330588 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 4612 chr9 128666464 128667288 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 156398 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 4170 chr7 141122122 141122851 + 0 NA intron (NM_001195278, intron 2 of 3) LTR78|LTR|ERV1 -128592 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 3811 chr6 138112783 138113514 + 0 NA Intergenic Intergenic -52974 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LOC100507406 - uncharacterized LOC100507406 ncRNA 4017 chr7 83023971 83024955 + 0 NA intron (NM_001178129, intron 12 of 16) intron (NM_001178129, intron 12 of 16) -232266 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 572 chr11 12777366 12778166 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 81797 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 3762 chr6 112131113 112132104 + 0 NA intron (NM_002037, intron 2 of 13) intron (NM_002037, intron 2 of 13) -51274 NM_153048 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 3984 chr7 70033435 70035094 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -563259 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 4159 chr7 138154028 138155048 + 0 NA intron (NM_003852, intron 1 of 18) Charlie7|DNA|hAT-Charlie 9459 NM_015905 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 1448 chr14 71948166 71949851 + 0 NA Intergenic Intergenic -5570 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 2549 chr2 227683412 227684255 + 0 NA Intergenic MER102c|DNA|hAT-Charlie -16838 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RRP4 rhomboid domain containing 1 protein-coding 3795 chr6 124794037 124795562 + 0 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 190648 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 3146 chr4 74988663 74989438 + 0 NA Intergenic Intergenic -24053 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 C-X-C motif chemokine ligand 2 protein-coding 1573 chr15 29017560 29018438 + 0 NA Intergenic L1ME3|LINE|L1 -15390 NR_036475 100289656 Hs.646539 NR_036475 ENSG00000232431 LOC100289656 - Dexi homolog (mouse) pseudogene pseudo 1472 chr14 78874276 78875546 + 0 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 4837 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 3684 chr6 53536806 53537789 + 0 NA Intergenic Intergenic -6791 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 2020 chr18 49929512 49930635 + 0 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 63531 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 4485 chr9 10014083 10015846 + 0 NA intron (NM_002839, intron 4 of 45) intron (NM_002839, intron 4 of 45) 215572 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 3524 chr5 158240313 158241006 + 0 NA intron (NM_001324107, intron 8 of 15) MIR3|SINE|MIR 286111 NM_001324101 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 3770 chr6 118528799 118529991 + 0 NA intron (NM_001029858, intron 2 of 7) intron (NM_001029858, intron 2 of 7) 122329 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 2622 chr20 17451948 17453488 + 0 NA intron (NM_002594, intron 11 of 11) intron (NM_002594, intron 11 of 11) 59296 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 2799 chr3 586357 587252 + 0 NA Intergenic Intergenic -46984 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 3725 chr6 96839378 96840306 + 0 NA Intergenic Intergenic -129860 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 1772 chr16 70185109 70186411 + 0 NA intron (NM_001322119, intron 15 of 16) intron (NM_001322119, intron 15 of 16) 21591 NR_126007 400541 Hs.461183 NR_126007 ENSG00000247228 LOC400541 - uncharacterized LOC400541 ncRNA 418 chr10 1608436 1608890 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 39838 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 4466 chr9 7164829 7166039 + 0 NA intron (NM_015061, intron 20 of 21) intron (NM_015061, intron 20 of 21) 407793 NM_001304341 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 2324 chr2 80473319 80474376 + 0 NA intron (NM_001282597, intron 7 of 18) intron (NM_001282597, intron 7 of 18) 57640 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 4174 chr7 142456719 142458129 + 0 NA intron (NM_002769, intron 1 of 4) intron (NM_002769, intron 1 of 4) 105 NM_002769 5644 Hs.382212 NM_002769 ENSG00000204983 PRSS1 TRP1|TRY1|TRY4|TRYP1 protease, serine 1 protein-coding 933 chr12 67474244 67475013 + 0 NA intron (NR_120490, intron 3 of 3) intron (NR_120490, intron 3 of 3) 15436 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 2217 chr2 40409975 40411117 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 246898 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 348 chr1 204618685 204619771 + 0 NA intron (NM_201630, intron 1 of 1) intron (NM_201630, intron 1 of 1) 35253 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 2333 chr2 89866365 89873674 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 758135 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 2052 chr18 64322323 64323302 + 0 NA Intergenic Intergenic -51437 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 4496 chr9 14524920 14526141 + 0 NA Intergenic MIRb|SINE|MIR -126548 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 1090 chr12 119807598 119809157 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 35860 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 627 chr11 24104237 24105100 + 0 NA Intergenic Intergenic -413848 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 993 chr12 98446622 98448614 + 0 NA Intergenic Intergenic -58392 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 2868 chr3 77305410 77306815 + 0 NA intron (NM_001128929, intron 1 of 24) MER127|DNA|TcMar-Tigger 158949 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1308 chr13 113557532 113558486 + 0 NA Intergenic Intergenic 64943 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 2503 chr2 197045913 197046923 + 0 NA Intergenic Intergenic -10082 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 4100 chr7 126173482 126174632 + 0 NA intron (NM_001127323, intron 8 of 10) intron (NM_001127323, intron 8 of 10) 524181 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 4458 chr9 2298782 2299993 + 0 NA Intergenic Intergenic 140931 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 388 chr1 222711484 222712477 + 0 NA intron (NM_024746, intron 5 of 8) intron (NM_024746, intron 5 of 8) 9464 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 1425 chr14 65085053 65086540 + 0 NA Intergenic Intergenic 69176 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 4190 chr7 157150993 157151950 + 0 NA intron (NM_058246, intron 2 of 9) intron (NM_058246, intron 2 of 9) 21760 NM_058246 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 3083 chr4 9672160 9672921 + 0 NA Intergenic Intergenic -110718 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 1842 chr17 36178000 36178887 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 65920 NR_024178 284100 Hs.434159 NM_001129906 ENSG00000276715 YWHAEP7 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7 pseudo 485 chr10 79180540 79181639 + 0 NA intron (NM_001322832, intron 1 of 27) L2c|LINE|L2 70459 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 2143 chr2 5549821 5550704 + 0 NA Intergenic Intergenic 280988 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 3316 chr5 14162051 14162800 + 0 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 18614 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 1270 chr13 103865200 103865956 + 0 NA Intergenic Intergenic -146382 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 3881 chr7 20553718 20554481 + 0 NA Intergenic Intergenic -101146 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 1645 chr15 79188990 79190001 + 0 NA 3' UTR (NM_001265605, exon 12 of 12) 3' UTR (NM_001265605, exon 12 of 12) 24164 NM_001265604 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 1389 chr14 54065113 54067104 + 0 NA Intergenic Intergenic 349094 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 324 chr1 184825507 184826543 + 0 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) -101984 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 3508 chr5 154773616 154774494 + 0 NA Intergenic Intergenic 380740 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 637 chr11 27695355 27696335 + 0 NA 5' UTR (NM_001143810, exon 2 of 3) 5' UTR (NM_001143810, exon 2 of 3) -14649 NM_170735 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 2066 chr18 70207029 70207676 + 0 NA intron (NM_182511, intron 3 of 4) intron (NM_182511, intron 3 of 4) 4371 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 4223 chr8 6645039 6645772 + 0 NA Intergenic Intergenic -42644 NR_039807 100616372 NR_039807 ENSG00000283386 MIR4659B - microRNA 4659b ncRNA 752 chr11 110630310 110631340 + 0 NA Intergenic Intergenic -46913 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 2679 chr20 58633006 58634472 + 0 NA TTS (NR_126504) TTS (NR_126504) 2759 NM_001302813 284756 Hs.335319 NM_173644 C20orf197 - chromosome 20 open reading frame 197 protein-coding 1232 chr13 99362663 99364056 + 0 NA intron (NM_005073, intron 11 of 22) intron (NM_005073, intron 11 of 22) 41570 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 2899 chr3 108618359 108619077 + 0 NA Intergenic L2a|LINE|L2 53959 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 2941 chr3 127285267 127286684 + 0 NA Intergenic Intergenic 8199 NR_106883 102466199 NR_106883 ENSG00000275067 MIR6825 hsa-mir-6825 microRNA 6825 ncRNA 3045 chr3 178306151 178307146 + 0 NA intron (NM_001278911, intron 1 of 4) MIRb|SINE|MIR 30160 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 379 chr1 211520030 211521686 + 0 NA intron (NM_145759, intron 1 of 10) intron (NM_145759, intron 1 of 10) 1152 NM_145759 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 1639 chr15 73668187 73668819 + 0 NA Intergenic Intergenic -6898 NM_005477 10021 Hs.86941 NM_005477 ENSG00000138622 HCN4 SSS2 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding 3404 chr5 95737925 95738854 + 0 NA intron (NM_000439, intron 9 of 13) MER76|LTR|ERVL 29474 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 1035 chr12 106207871 106208806 + 0 NA Intergenic Intergenic 107786 NR_110111 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 3872 chr7 11215237 11216054 + 0 NA Intergenic Intergenic 202146 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 3367 chr5 65803387 65804398 + 0 NA intron (NR_105001, intron 2 of 2) intron (NR_105001, intron 2 of 2) 3540 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LOC101928769 - uncharacterized LOC101928769 ncRNA 3964 chr7 68631852 68632860 + 0 NA Intergenic Intergenic 430125 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 1894 chr17 65943938 65945165 + 0 NA intron (NM_182641, intron 23 of 27) intron (NM_182641, intron 23 of 27) 45214 NM_181655 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 535 chr10 122578503 122579623 + 0 NA intron (NR_033850, intron 1 of 2) intron (NR_033850, intron 1 of 2) -31624 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 3138 chr4 68783015 68783686 + 0 NA intron (NM_001114387, intron 8 of 9) intron (NM_001114387, intron 8 of 9) -33634 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane protease, serine 11D protein-coding 683 chr11 72018211 72020604 + 0 NA intron (NM_030813, intron 9 of 16) intron (NM_030813, intron 9 of 16) -64187 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2a protein-coding 2260 chr2 51046366 51048314 + 0 NA intron (NM_001135659, intron 5 of 23) intron (NM_001135659, intron 5 of 23) -123940 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 1215 chr13 94628679 94629656 + 0 NA intron (NM_005708, intron 3 of 8) intron (NM_005708, intron 3 of 8) -118441 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 4378 chr8 109772164 109773565 + 0 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 26980 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 2995 chr3 141514664 141515798 + 0 NA intron (NM_139209, intron 2 of 3) MIRb|SINE|MIR 18188 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 3886 chr7 24078348 24079259 + 0 NA Intergenic Intergenic -245004 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 1712 chr16 19256130 19257452 + 0 NA intron (NM_001330509, intron 7 of 7) intron (NM_001330509, intron 7 of 7) -40314 NM_001256720 728276 Hs.632180 NM_001256720 ENSG00000261210 CLEC19A - C-type lectin domain family 19 member A protein-coding 2344 chr2 91606504 91612128 + 0 NA Intergenic HSATII|Satellite|Satellite 238659 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 765 chr11 114717962 114719127 + 0 NA Intergenic Intergenic 169344 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 2552 chr2 229216532 229217599 + 0 NA Intergenic Intergenic -170704 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 312 chr1 181712576 181713786 + 0 NA intron (NM_001205294, intron 24 of 45) intron (NM_001205294, intron 24 of 45) 260495 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 2521 chr2 208766125 208766731 + 0 NA intron (NM_001080475, intron 6 of 7) intron (NM_001080475, intron 6 of 7) 123856 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 4452 chr9 100194 101005 + 0 NA Intergenic Intergenic 17818 NM_207305 2298 Hs.584759 NM_207305 ENSG00000170122 FOXD4 FKHL9|FOXD4A|FREAC-5|FREAC5 forkhead box D4 protein-coding 1002 chr12 99135126 99136357 + 0 NA intron (NM_001204081, intron 9 of 9) intron (NM_001204081, intron 9 of 9) 96663 NM_001160 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 2435 chr2 148209516 148210132 + 0 NA Intergenic Intergenic -392262 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 370 chr1 209115568 209116496 + 0 NA Intergenic Intergenic -382769 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 3398 chr5 87031552 87032285 + 0 NA Intergenic Intergenic -323068 NM_001239 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 567 chr11 11801874 11803485 + 0 NA Intergenic Intergenic 2090 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 3749 chr6 110137772 110139190 + 0 NA intron (NM_014845, intron 22 of 22) intron (NM_014845, intron 22 of 22) -64062 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 3115 chr4 38275397 38276116 + 0 NA Intergenic Intergenic 154181 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 380 chr1 211670566 211672034 + 0 NA Intergenic MER82|DNA|TcMar-Tigger -5041 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3 protein-coding 1279 chr13 107101211 107102044 + 0 NA Intergenic Intergenic 72716 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 965 chr12 81232131 81233278 + 0 NA intron (NR_136888, intron 5 of 6) intron (NR_136888, intron 5 of 6) -6296 NR_030348 693202 NR_030348 ENSG00000207763 MIR617 MIRN617|hsa-mir-617 microRNA 617 ncRNA 3206 chr4 120287716 120288806 + 0 NA Intergenic Intergenic 43554 NR_037596 401149 Hs.448518 NR_037596 LINC01061 - long intergenic non-protein coding RNA 1061 ncRNA 2079 chr19 19528154 19528890 + 0 NA intron (NM_017660, intron 1 of 11) intron (NM_017660, intron 1 of 11) -17350 NR_030370 693225 NR_030370 ENSG00000207821 MIR640 MIRN640|hsa-mir-640 microRNA 640 ncRNA 2974 chr3 134785475 134786610 + 0 NA intron (NM_004441, intron 3 of 15) L1PB1|LINE|L1 271943 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1395 chr14 57114857 57116306 + 0 NA 3' UTR (NM_017799, exon 16 of 16) 3' UTR (NM_017799, exon 16 of 16) 69070 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101 transmembrane protein 260 protein-coding 286 chr1 168255404 168256876 + 0 NA intron (NM_005149, intron 1 of 7) L1MB8|LINE|L1 5862 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box 19 protein-coding 1075 chr12 116005599 116006510 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 580405 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 800 chr11 121968219 121969046 + 0 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) 1920 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 2426 chr2 143934358 143935528 + 0 NA intron (NM_018460, intron 2 of 13) intron (NM_018460, intron 2 of 13) 48044 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 3125 chr4 49129974 49158803 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 155729 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 4469 chr9 7776219 7778790 + 0 NA Intergenic Intergenic 22302 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 TMEM261 C9orf123 transmembrane protein 261 protein-coding 1365 chr14 42687062 42688073 + 0 NA Intergenic Intergenic 611508 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 3613 chr6 23789903 23790750 + 0 NA Intergenic L2a|LINE|L2 -336088 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 4563 chr9 92800831 92801831 + 0 NA intron (NR_038882, intron 1 of 3) intron (NR_038882, intron 1 of 3) 2450 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 1779 chr16 75519834 75520503 + 0 NA intron (NM_021615, intron 1 of 2) intron (NM_021615, intron 1 of 2) 8758 NM_021615 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 MCDC1 carbohydrate sulfotransferase 6 protein-coding 1568 chr15 27442159 27442914 + 0 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) -36070 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 607 chr11 20509208 20510504 + 0 NA intron (NM_005788, intron 13 of 15) intron (NM_005788, intron 13 of 15) 100780 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 1807 chr17 22244496 22263014 + 0 NA Intergenic ALR/Alpha|Satellite|centr 231318 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2-like 1 protein-coding 2902 chr3 111761366 111762192 + 0 NA intron (NM_001042575, intron 2 of 15) intron (NM_001042575, intron 2 of 15) 3314 NR_026734 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane protease, serine 7 protein-coding 3093 chr4 20355676 20356462 + 0 NA intron (NM_001289136, intron 4 of 35) intron (NM_001289136, intron 4 of 35) -37743 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 2508 chr2 202887358 202889035 + 0 NA Intergenic Intergenic -11114 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 1073 chr12 115697905 115698912 + 0 NA Intergenic Intergenic -576439 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 2187 chr2 26908659 26911195 + 0 NA Intergenic Intergenic -5654 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 3399 chr5 91038246 91039462 + 0 NA Intergenic Intergenic -359664 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 3860 chr6 169988935 169990311 + 0 NA intron (NM_182552, intron 23 of 25) intron (NM_182552, intron 23 of 25) 112536 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 2844 chr3 55438011 55438895 + 0 NA Intergenic Tigger9b|DNA|TcMar-Tigger 76973 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 3575 chr6 15061221 15062009 + 0 NA Intergenic L2b|LINE|L2 -184591 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 816 chr11 126427865 126428868 + 0 NA intron (NM_032531, intron 2 of 16) intron (NM_032531, intron 2 of 16) -94307 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 3031 chr3 171942036 171942887 + 0 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 184117 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 4260 chr8 28332436 28333800 + 0 NA intron (NM_172366, intron 2 of 8) intron (NM_172366, intron 2 of 8) 14717 NM_001258211 157574 Hs.741522 NM_172366 ENSG00000214050 FBXO16 FBX16 F-box protein 16 protein-coding 4010 chr7 80566429 80567208 + 0 NA Intergenic Intergenic -18151 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 1062 chr12 114427056 114427854 + 0 NA Intergenic Intergenic -23279 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 - RNA binding motif protein 19 protein-coding 3159 chr4 79134224 79134930 + 0 NA intron (NM_001166133, intron 2 of 41) MLT1J|LTR|ERVL-MaLR 155853 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 - Fraser extracellular matrix complex subunit 1 protein-coding 3112 chr4 25929105 25930909 + 0 NA intron (NM_001145432, intron 2 of 2) intron (NM_001145432, intron 2 of 2) 14193 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7 small integral membrane protein 20 protein-coding 3169 chr4 82727412 82727947 + 0 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -334597 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 1700 chr16 12412985 12413760 + 0 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 342781 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 2609 chr20 12221559 12222278 + 0 NA Intergenic Intergenic 323405 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 4240 chr8 18952707 18954412 + 0 NA Intergenic Intergenic -82363 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 445 chr10 33772229 33773094 + 0 NA Intergenic Intergenic -148828 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 3261 chr4 182182874 182184117 + 0 NA Intergenic Intergenic -103193 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 2131 chr2 2891717 2892385 + 0 NA Intergenic Intergenic 237747 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 1339 chr14 36603305 36605256 + 0 NA TTS (NR_049735) TTS (NR_049735) 41577 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) ncRNA 2338 chr2 90379631 90382395 + 0 NA Intergenic HSATII|Satellite|Satellite 1269129 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 4002 chr7 78118698 78120589 + 0 NA intron (NM_001301128, intron 5 of 20) intron (NM_001301128, intron 5 of 20) 143084 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 3866 chr7 3918826 3919953 + 0 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -249928 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 4741 chrY 13843476 13844170 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 689566 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 3781 chr6 123065484 123066777 + 0 NA Intergenic HERVE_a-int|LTR|ERV1 -4216 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 2120 chr2 1790912 1792313 + 0 NA Intergenic Intergenic -43293 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 4603 chr9 124620002 124620803 + 0 NA intron (NM_001139442, intron 8 of 8) intron (NM_001139442, intron 8 of 8) 115338 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 4636 chrUn_gl000212 40371 41408 + 0 NA intron (NR_027278, intron 1 of 7) HSATI|Satellite|Satellite 16840 NR_027278 26080 Hs.448583 NR_027278 ENSG00000279516 FAM230C LINC00281|NCRNA00281 family with sequence similarity 230 member C ncRNA 1858 chr17 46275754 46276851 + 0 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -42429 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 718 chr11 92421429 92422296 + 0 NA intron (NM_001008781, intron 2 of 24) MER5A1|DNA|hAT-Charlie 226932 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 1581 chr15 33423283 33424799 + 0 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 62893 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 2147 chr2 6222336 6223192 + 0 NA Intergenic Intergenic 100654 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 4689 chrX 61730589 61731403 + 0 NA Intergenic ALR/Alpha|Satellite|centr 840222 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 1604 chr15 58535042 58536665 + 0 NA Intergenic MIRb|SINE|MIR 105458 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 1507 chr14 81915935 81917288 + 0 NA promoter-TSS (NR_109999) promoter-TSS (NR_109999) -110 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LOC100506700 - uncharacterized LOC100506700 ncRNA 3997 chr7 77682976 77683711 + 0 NA intron (NM_001301128, intron 20 of 20) intron (NM_001301128, intron 20 of 20) 213896 NM_001127357 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 868 chr12 16265948 16266741 + 0 NA Intergenic Intergenic 164275 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 4592 chr9 115195463 115196668 + 0 NA intron (NM_032303, intron 6 of 10) intron (NM_032303, intron 6 of 10) -53183 NM_001287036 158405 Hs.656619 NM_133465 ENSG00000165185 KIAA1958 - KIAA1958 protein-coding 4096 chr7 125416063 125416846 + 0 NA Intergenic Intergenic -512109 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 4736 chrY 13686778 13688511 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 845745 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 1140 chr13 33712500 33713701 + 0 NA intron (NM_178006, intron 4 of 13) intron (NM_178006, intron 4 of 13) 47116 NM_001243466 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 3417 chr5 107127253 107128100 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger -121080 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 275 chr1 164591420 164592959 + 0 NA intron (NM_001204963, intron 2 of 8) AluSg|SINE|Alu 63592 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 2035 chr18 55653250 55654134 + 0 NA Intergenic Intergenic -57918 NM_015277 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 197 chr1 110679280 110680082 + 0 NA Intergenic Intergenic -13455 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 4459 chr9 2359901 2361374 + 0 NA Intergenic Intergenic 202181 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 2208 chr2 37587045 37587888 + 0 NA intron (NM_012413, intron 3 of 6) intron (NM_012413, intron 3 of 6) 15713 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 3314 chr5 13939426 13940252 + 0 NA intron (NM_001369, intron 1 of 78) intron (NM_001369, intron 1 of 78) 4750 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 3626 chr6 24860758 24861457 + 0 NA intron (NM_001346031, intron 8 of 21) intron (NM_001346031, intron 8 of 21) 16486 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 FAM65B C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65 member B protein-coding 1731 chr16 46385750 46414752 + 0 NA Intergenic HSATII|Satellite|Satellite 202758 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 853 chr12 10787003 10788062 + 0 NA intron (NM_018423, intron 2 of 10) intron (NM_018423, intron 2 of 10) -21324 NM_018048 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex core component protein-coding 4024 chr7 84949685 84950922 + 0 NA Intergenic Intergenic -100135 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 1500 chr14 81532475 81533593 + 0 NA intron (NM_001018036, intron 2 of 8) MER5B|DNA|hAT-Charlie 111165 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 4275 chr8 32724795 32726255 + 0 NA Intergenic Intergenic 146254 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 4393 chr8 120983821 120985142 + 0 NA intron (NM_022783, intron 4 of 8) MIR|SINE|MIR 98586 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 2136 chr2 3656464 3657469 + 0 NA intron (NM_001255989, intron 1 of 3) AluJb|SINE|Alu 3324 NM_001255989 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 4175 chr7 142467872 142468719 + 0 NA Intergenic Intergenic -10462 NR_001296 154754 Hs.449281 NR_001296 PRSS3P2 T6|TRY6 protease, serine 3 pseudogene 2 pseudo 4103 chr7 126313008 126313889 + 0 NA intron (NM_001127323, intron 7 of 10) intron (NM_001127323, intron 7 of 10) 384790 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 2685 chr20 60009176 60010073 + 0 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -64853 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 4073 chr7 111696314 111696963 + 0 NA intron (NM_014705, intron 1 of 51) Charlie7|DNA|hAT-Charlie 149824 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 3410 chr5 99451526 99452345 + 0 NA Intergenic MER54B|LTR|ERVL 272023 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 3517 chr5 156975449 156976317 + 0 NA intron (NM_033274, intron 3 of 22) intron (NM_033274, intron 3 of 22) 26948 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 1295 chr13 110666820 110668827 + 0 NA Intergenic Intergenic -37809 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 3028 chr3 170809704 170810812 + 0 NA intron (NM_001161560, intron 22 of 31) intron (NM_001161560, intron 22 of 31) 14290 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 2832 chr3 41203511 41204359 + 0 NA Intergenic Intergenic -36980 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 3978 chr7 69398997 69400124 + 0 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 335655 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 1111 chr12 129816627 129817414 + 0 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 123874 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 LOC101927735 - uncharacterized LOC101927735 ncRNA 3281 chr5 2733670 2734979 + 0 NA Intergenic Intergenic 17445 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 3249 chr4 157683954 157685308 + 0 NA intron (NM_016205, intron 5 of 5) intron (NM_016205, intron 5 of 5) 207915 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 3271 chr4 184276088 184276969 + 0 NA Intergenic Intergenic -32949 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 4055 chr7 107818441 107819423 + 0 NA intron (NM_001037132, intron 22 of 29) intron (NM_001037132, intron 22 of 29) -48131 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 4608 chr9 126385859 126386651 + 0 NA intron (NM_024820, intron 10 of 20) intron (NM_024820, intron 10 of 20) -138354 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 2238 chr2 48670893 48672095 + 0 NA intron (NM_152994, intron 1 of 20) intron (NM_152994, intron 1 of 20) 3586 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 1878 chr17 55131303 55132160 + 0 NA Intergenic Intergenic 8892 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 2388 chr2 121984817 121986696 + 0 NA intron (NM_014553, intron 13 of 14) intron (NM_014553, intron 13 of 14) 57022 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 2938 chr3 125625945 125627231 + 0 NA Intergenic Intergenic -8856 NR_024250 100125556 Hs.553949 NR_024250 ENSG00000171084 FAM86JP - family with sequence similarity 86, member A pseudogene pseudo 1690 chr16 7623830 7624634 + 0 NA intron (NM_145892, intron 2 of 12) intron (NM_145892, intron 2 of 12) 241481 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 2964 chr3 133191869 133193462 + 0 NA intron (NM_003571, intron 6 of 6) SVA_D|Other|Other 17325 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 3915 chr7 30123537 30124418 + 0 NA 3' UTR (NM_001197026, exon 14 of 14) 3' UTR (NM_001197026, exon 14 of 14) -50575 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 4516 chr9 36526319 36527424 + 0 NA Intergenic L1MEe|LINE|L1 -45988 NM_001256687 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 617 chr11 22284959 22285772 + 0 NA intron (NM_213599, intron 17 of 21) intron (NM_213599, intron 17 of 21) 70643 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|TMEM16E anoctamin 5 protein-coding 4136 chr7 132086247 132088209 + 0 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 141608 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 3943 chr7 57553752 57554826 + 0 NA Intergenic HSATII|Satellite|Satellite 44406 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 3801 chr6 126142902 126143715 + 0 NA intron (NM_001199621, intron 2 of 14) intron (NM_001199621, intron 2 of 14) -3304 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 4061 chr7 107935911 107936934 + 0 NA intron (NM_005010, intron 3 of 27) intron (NM_005010, intron 3 of 27) -55808 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 2918 chr3 117340829 117341795 + 0 NA Intergenic Intergenic 701034 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 3821 chr6 149014833 149015686 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -53012 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 1594 chr15 47535524 47536384 + 0 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 59551 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 251 chr1 156928827 156929704 + 0 NA intron (NM_014784, intron 14 of 39) intron (NM_014784, intron 14 of 39) -23229 NR_030527 768220 NR_030527 ENSG00000211581 MIR765 MIRN765|hsa-mir-765|mir-765 microRNA 765 ncRNA 369 chr1 209010253 209011292 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -488029 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 1548 chr14 96592814 96593836 + 0 NA Intergenic Intergenic -77810 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 3900 chr7 27072381 27073148 + 0 NA Intergenic Intergenic 62861 NM_005522 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 4053 chr7 107622614 107624077 + 0 NA intron (NM_002291, intron 7 of 33) intron (NM_002291, intron 7 of 33) 20459 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 1823 chr17 32060590 32061370 + 0 NA intron (NM_001094, intron 1 of 9) L2a|LINE|L2 -200201 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 2267 chr2 52442540 52443514 + 0 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -154759 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 2537 chr2 218127521 218129103 + 0 NA Intergenic Intergenic -19144 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 887 chr12 29179126 29179983 + 0 NA Intergenic Intergenic -122382 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 72 chr1 33862378 33863310 + 0 NA Intergenic Intergenic -21650 NM_198040 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 3371 chr5 66450199 66451083 + 0 NA intron (NM_001297651, intron 23 of 25) intron (NM_001297651, intron 23 of 25) 41976 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 1496 chr14 80413733 80414708 + 0 NA Intergenic Intergenic -263542 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 1682 chr16 6549262 6551021 + 0 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -273669 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 2781 chr22 31347471 31348462 + 0 NA intron (NM_014941, intron 4 of 26) intron (NM_014941, intron 4 of 26) 16307 NM_001303256 22880 Hs.555918 NM_014941 ENSG00000133422 MORC2 CMT2Z|ZCW3|ZCWCC1 MORC family CW-type zinc finger 2 protein-coding 1108 chr12 129559882 129560753 + 0 NA intron (NM_133448, intron 8 of 8) intron (NM_133448, intron 8 of 8) -33918 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 1014 chr12 103712245 103713008 + 0 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 167006 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 2282 chr2 59150850 59152008 + 0 NA intron (NR_033873, intron 4 of 13) intron (NR_033873, intron 4 of 13) -293414 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 843 chr12 3763814 3764946 + 0 NA intron (NM_032680, intron 9 of 10) intron (NM_032680, intron 9 of 10) 97986 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 2760 chr21 45062948 45063618 + 0 NA intron (NM_007031, intron 4 of 8) MSTB1|LTR|ERVL-MaLR 16091 NM_007031 11077 Hs.406157 NM_007031 ENSG00000160207 HSF2BP - heat shock transcription factor 2 binding protein protein-coding 2529 chr2 213018943 213020003 + 0 NA intron (NM_005235, intron 1 of 27) intron (NM_005235, intron 1 of 27) 271611 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 4677 chrX 19631698 19632624 + 0 NA intron (NM_001024666, intron 7 of 16) intron (NM_001024666, intron 7 of 16) 56958 NM_001184960 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 2315 chr2 70980685 70981716 + 0 NA intron (NM_017482, intron 1 of 12) intron (NM_017482, intron 1 of 12) 13647 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 2257 chr2 50468241 50469161 + 0 NA intron (NM_001135659, intron 18 of 23) intron (NM_001135659, intron 18 of 23) 106191 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 514 chr10 101213549 101214310 + 0 NA Intergenic Intergenic -23399 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 610 chr11 20719214 20720163 + 0 NA intron (NM_201551, intron 2 of 18) intron (NM_201551, intron 2 of 18) 28591 NM_001288714 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 3973 chr7 69247663 69248807 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 184330 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 2444 chr2 152590091 152590918 + 0 NA intron (NM_001164507, intron 1 of 181) intron (NM_001164507, intron 1 of 181) 497 NM_001164508 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 725 chr11 92761408 92762841 + 0 NA Intergenic Intergenic 59335 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 3921 chr7 35318445 35319511 + 0 NA Intergenic Intergenic -25267 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box 20 protein-coding 4088 chr7 117238116 117238967 + 0 NA intron (NM_000492, intron 15 of 26) intron (NM_000492, intron 15 of 26) 118524 NM_000492 1080 Hs.489786 NM_000492 ENSG00000001626 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 cystic fibrosis transmembrane conductance regulator protein-coding 4290 chr8 43094362 43095427 + 0 NA Intergenic SAR|Satellite|Satellite -52691 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 1994 chr18 41840239 41841090 + 0 NA Intergenic Intergenic 270998 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 3252 chr4 166319521 166320368 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 12550 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 3907 chr7 28762259 28762909 + 0 NA intron (NM_001011666, intron 2 of 6) L3|LINE|CR1 36986 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 3857 chr6 168547678 168548698 + 0 NA Intergenic Intergenic -65951 NR_110312 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 1136 chr13 32560863 32561791 + 0 NA Intergenic Intergenic -44110 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 4048 chr7 105573069 105574249 + 0 NA Intergenic Intergenic -29998 NM_152750 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 4183 chr7 151592127 151593154 + 0 NA Intergenic Intergenic -18324 NM_016203 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 1175 chr13 49390437 49391116 + 0 NA Intergenic Intergenic -159272 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 4011 chr7 81739624 81740686 + 0 NA intron (NM_000722, intron 6 of 38) L2a|LINE|L2 101662 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 1683 chr16 6577128 6578174 + 0 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -246159 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 1326 chr14 29074923 29075948 + 0 NA Intergenic Intergenic 159090 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 3714 chr6 90198694 90199416 + 0 NA intron (NM_014942, intron 1 of 15) intron (NM_014942, intron 1 of 15) 56158 NM_001242809 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 1382 chr14 51675915 51677636 + 0 NA Intergenic Intergenic -30111 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 1452 chr14 75876199 75878793 + 0 NA Intergenic Intergenic -17013 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 2384 chr2 110883721 110884675 + 0 NA intron (NM_001128179, intron 16 of 17) intron (NM_001128179, intron 16 of 17) -10055 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 2637 chr20 26317842 26318919 + 0 NA Intergenic ALR/Alpha|Satellite|centr -128511 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 589 chr11 15716353 15717394 + 0 NA intron (NM_001293172, intron 1 of 2) MIRc|SINE|MIR 51442 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 1337 chr14 36461447 36463392 + 0 NA Intergenic Intergenic -77214 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 2098 chr19 42372036 42372936 + 0 NA intron (NM_001321485, intron 3 of 5) intron (NM_001321485, intron 3 of 5) -1211 NR_106855 102465478 NR_106855 ENSG00000276926 MIR6797 hsa-mir-6797 microRNA 6797 ncRNA 3101 chr4 24461170 24462051 + 0 NA intron (NM_001330752, intron 1 of 13) Kanga2_a|DNA|TcMar-Tc2 12842 NM_001330751 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 3837 chr6 156906593 156907449 + 0 NA Intergenic MER51A|LTR|ERV1 -191968 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 150 chr1 76668388 76669409 + 0 NA intron (NM_152996, intron 1 of 4) MER5B|DNA|hAT-Charlie 128509 NM_001160011 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 3018 chr3 161058792 161059542 + 0 NA Intergenic Intergenic 30704 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 245 chr1 153315340 153316383 + 0 NA intron (NM_020393, intron 4 of 8) intron (NM_020393, intron 4 of 8) 5456 NM_020393 57115 Hs.58356 NM_020393 ENSG00000163218 PGLYRP4 PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67 peptidoglycan recognition protein 4 protein-coding 2511 chr2 206144991 206146191 + 0 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -401633 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 2604 chr20 10312241 10314393 + 0 NA Intergenic L2c|LINE|L2 99256 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 2546 chr2 224162241 224163121 + 0 NA Intergenic HERVL-int|LTR|ERVL 246033 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 2666 chr20 49178567 49180729 + 0 NA intron (NM_002827, intron 2 of 9) intron (NM_002827, intron 2 of 9) -22675 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 3012 chr3 159590099 159591280 + 0 NA intron (NM_001197113, intron 6 of 10) intron (NM_001197113, intron 6 of 10) 33039 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 332 chr1 202239663 202240617 + 0 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 56857 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 1099 chr12 125180128 125181836 + 0 NA Intergenic Intergenic -128972 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 3599 chr6 20717091 20719028 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 183371 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 1965 chr18 31382783 31383615 + 0 NA Intergenic Intergenic 224658 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 34 chr1 15040052 15041514 + 0 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 115570 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 745 chr11 109267937 109268713 + 0 NA Intergenic L1MA10|LINE|L1 -24521 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 3691 chr6 61901379 61902424 + 0 NA Intergenic ALR/Alpha|Satellite|centr -382107 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 2656 chr20 44768373 44769372 + 0 NA Intergenic Intergenic 21979 NM_001322422 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 3650 chr6 39230958 39232023 + 0 NA Intergenic Intergenic -34239 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 2082 chr19 29777874 29778792 + 0 NA non-coding (NR_040029, exon 10 of 10) non-coding (NR_040029, exon 10 of 10) -74197 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1410 chr14 61532174 61532960 + 0 NA intron (NM_001172702, intron 15 of 16) intron (NM_001172702, intron 15 of 16) 84602 NR_033344 145389 Hs.200738 NM_153811 ENSG00000139974 SLC38A6 NAT-1|SNAT6 solute carrier family 38 member 6 protein-coding 2613 chr20 12740571 12741359 + 0 NA Intergenic Intergenic 176646 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 3056 chr3 187515879 187517785 + 0 NA Intergenic LTR12C|LTR|ERV1 -53319 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 2693 chr21 10763272 10765127 + 0 NA Intergenic ALR/Alpha|Satellite|centr 226744 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 3789 chr6 124283499 124284439 + 0 NA intron (NM_153355, intron 1 of 5) LTR18A|LTR|ERVL 158978 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 4449 chr8 142959315 142960384 + 0 NA Intergenic Intergenic -92175 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 1434 chr14 66825596 66826505 + 0 NA Intergenic Intergenic -127039 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 LINC00238 C14orf53|NCRNA00238 long intergenic non-protein coding RNA 238 ncRNA 4182 chr7 151348366 151349277 + 0 NA intron (NM_016203, intron 4 of 15) Charlie1a|DNA|hAT-Charlie -19117 NM_001304531 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 2713 chr21 19022075 19023124 + 0 NA Intergenic Intergenic -37331 NM_001130914 10950 Hs.473420 NM_006806 ENSG00000154640 BTG3 ANA|APRO4|TOB5|TOB55|TOFA BTG anti-proliferation factor 3 protein-coding 1547 chr14 96556424 96557957 + 0 NA 3' UTR (NM_001252507, exon 2 of 2) 3' UTR (NM_001252507, exon 2 of 2) 51529 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 2471 chr2 171169816 171170711 + 0 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 37190 NR_110576 101929753 Hs.534101 NR_110576 LOC101929753 - uncharacterized LOC101929753 ncRNA 3457 chr5 136631839 136632765 + 0 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 168416 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 1045 chr12 107930081 107930992 + 0 NA intron (NM_001347944, intron 2 of 14) L1MA5|LINE|L1 -44098 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 1619 chr15 61926856 61927594 + 0 NA Intergenic Intergenic -405723 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 4265 chr8 30428574 30430077 + 0 NA 3' UTR (NM_006867, exon 10 of 10) 3' UTR (NM_006867, exon 10 of 10) -66792 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 1069 chr12 115498276 115499409 + 0 NA Intergenic MER121|DNA|TcMar? -376873 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 1224 chr13 98070060 98070871 + 0 NA Intergenic L1MDa|LINE|L1 -16010 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 368 chr1 208350757 208351917 + 0 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 66328 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 3078 chr4 6855874 6856799 + 0 NA intron (NM_014743, intron 4 of 9) intron (NM_014743, intron 4 of 9) -54835 NM_001113361 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 4007 chr7 80259704 80260846 + 0 NA intron (NM_001289911, intron 1 of 11) intron (NM_001289911, intron 1 of 11) -7557 NM_001001548 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 4705 chrX 109921830 109924191 + 0 NA intron (NM_001143981, intron 10 of 11) intron (NM_001143981, intron 10 of 11) 116066 NM_145234 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 611 chr11 20947989 20949272 + 0 NA intron (NM_201551, intron 7 of 18) intron (NM_201551, intron 7 of 18) 257533 NM_001288714 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 1849 chr17 41815217 41816300 + 0 NA Intergenic Intergenic 20398 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 849 chr12 5496690 5497810 + 0 NA Intergenic Intergenic -44030 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 4680 chrX 24139944 24140703 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -26783 NM_001330327 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein, X-linked protein-coding 492 chr10 86349738 86351135 + 0 NA Intergenic Intergenic 165498 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 2740 chr21 41420753 41421866 + 0 NA intron (NM_001389, intron 30 of 32) intron (NM_001389, intron 30 of 32) 163049 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 208 chr1 114572403 114573055 + 0 NA Intergenic HERVH-int|LTR|ERV1 50716 NM_001286353 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 2271 chr2 55158430 55159268 + 0 NA intron (NM_001039753, intron 27 of 40) intron (NM_001039753, intron 27 of 40) 78621 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 3225 chr4 139798795 139799832 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 134487 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 292 chr1 171111221 171113181 + 0 NA intron (NR_002601, intron 1 of 6) intron (NR_002601, intron 1 of 6) 5322 NR_002601 388714 Hs.448988 NR_002601 ENSG00000117507 FMO6P FMO6 flavin containing monooxygenase 6 pseudogene pseudo 2773 chr22 25943218 25944092 + 0 NA Intergenic Intergenic -17206 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 2445 chr2 152718950 152720020 + 0 NA intron (NM_001145798, intron 9 of 12) intron (NM_001145798, intron 9 of 12) -34476 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 4039 chr7 96161357 96162560 + 0 NA Intergenic Intergenic -29123 NM_001201451 401388 Hs.734935 NM_207503 ENSG00000127922 C7orf76 - chromosome 7 open reading frame 76 protein-coding 291 chr1 171108151 171109613 + 0 NA intron (NR_002601, intron 1 of 6) MER46C|DNA|TcMar-Tigger 2003 NR_002601 388714 Hs.448988 NR_002601 ENSG00000117507 FMO6P FMO6 flavin containing monooxygenase 6 pseudogene pseudo 3071 chr4 1352633 1353453 + 0 NA intron (NM_020894, intron 7 of 13) intron (NM_020894, intron 7 of 13) 11699 NM_001317935 57654 Hs.380475 NM_020894 ENSG00000163945 UVSSA KIAA1530|UVSS3 UV stimulated scaffold protein A protein-coding 3703 chr6 79889530 79890268 + 0 NA Intergenic MamRep434|DNA|TcMar-Tigger -53492 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 114 chr1 51098914 51099686 + 0 NA intron (NM_007051, intron 8 of 18) intron (NM_007051, intron 8 of 18) -210181 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 3272 chr4 184644068 184645148 + 0 NA Intergenic Intergenic 64188 NM_199053 60684 Hs.443240 NM_021942 ENSG00000168538 TRAPPC11 C4orf41|FOIGR|GRY|LGMD2S trafficking protein particle complex 11 protein-coding 1939 chr18 10928683 10929627 + 0 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) -169508 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 73 chr1 34329758 34331198 + 0 NA TTS (NR_033264) TTS (NR_033264) 798 NR_033264 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 67 chr1 31328736 31329911 + 0 NA Intergenic Intergenic 52157 NM_014654 9672 Hs.158287 NM_014654 ENSG00000162512 SDC3 SDCN|SYND3 syndecan 3 protein-coding 3335 chr5 49419478 49421706 + 0 NA Intergenic ALR/Alpha|Satellite|centr 316642 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 3636 chr6 36778585 36780267 + 0 NA intron (NM_001314017, intron 3 of 6) Charlie15a|DNA|hAT-Charlie 27794 NM_020939 57699 Hs.657869 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 241 chr1 151665461 151666255 + 0 NA intron (NM_030918, intron 10 of 11) intron (NM_030918, intron 10 of 11) 22934 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding 2561 chr2 235007224 235007964 + 0 NA Intergenic Intergenic 48248 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 3133 chr4 55971598 55972470 + 0 NA exon (NM_002253, exon 12 of 30) exon (NM_002253, exon 12 of 30) 19728 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 327 chr1 185970184 185971133 + 0 NA intron (NM_031935, intron 27 of 106) intron (NM_031935, intron 27 of 106) 266975 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 4697 chrX 79610031 79611049 + 0 NA intron (NM_001170574, intron 3 of 4) L1P4e|LINE|L1 19537 NM_001170574 169966 Hs.367959 NM_152630 ENSG00000174016 FAM46D CT1.26|CT112 family with sequence similarity 46 member D protein-coding 1970 chr18 32771954 32773686 + 0 NA Intergenic Intergenic -48174 NM_032347 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 4125 chr7 130060846 130062054 + 0 NA 3' UTR (NM_001257160, exon 3 of 3) 3' UTR (NM_001257160, exon 3 of 3) 19601 NM_001257159 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 2391 chr2 124796833 124798002 + 0 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 14553 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 4559 chr9 87793223 87793943 + 0 NA Intergenic LTR75|LTR|ERVL 508291 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 1281 chr13 107881349 107882351 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 301746 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 1864 chr17 49585363 49585875 + 0 NA Intergenic Intergenic 171543 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 3214 chr4 129511129 129512148 + 0 NA Intergenic Intergenic 162467 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 4554 chr9 85572283 85573422 + 0 NA Intergenic Intergenic 105191 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 3675 chr6 46850122 46851012 + 0 NA intron (NM_001098518, intron 6 of 20) Charlie17a|DNA|hAT-Charlie -20641 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 3491 chr5 151194619 151195495 + 0 NA Intergenic Intergenic -43320 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 1603 chr15 58456013 58456724 + 0 NA intron (NM_001320635, intron 1 of 4) intron (NM_001320635, intron 1 of 4) 25973 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 1881 chr17 55562156 55562758 + 0 NA intron (NM_170721, intron 5 of 9) intron (NM_170721, intron 5 of 9) 38501 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 4403 chr8 124983744 124984540 + 0 NA intron (NM_001039112, intron 6 of 40) intron (NM_001039112, intron 6 of 40) 68881 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 3952 chr7 66324959 66325698 + 0 NA intron (NR_135738, intron 3 of 6) intron (NR_135738, intron 3 of 6) 12891 NR_135738 101929580 Hs.571342 NR_135738 GTF2IP23 - general transcription factor IIi pseudogene 23 pseudo 24 chr1 11131595 11133263 + 0 NA intron (NM_002685, intron 18 of 23) MIRb|SINE|MIR -12338 NM_003132 6723 Hs.76244 NM_003132 ENSG00000116649 SRM PAPT|SPDSY|SPS1|SRML1 spermidine synthase protein-coding 2375 chr2 108211262 108212298 + 0 NA Intergenic Intergenic -158788 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 (non-protein coding) ncRNA 2759 chr21 45029200 45030166 + 0 NA TTS (NR_106718) TTS (NR_106718) 187 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 2049 chr18 62855536 62856871 + 0 NA Intergenic Intergenic -561285 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 3321 chr5 32259975 32260882 + 0 NA intron (NM_001040446, intron 7 of 15) intron (NM_001040446, intron 7 of 15) 52686 NM_001040446 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 104 chr1 48647229 48648684 + 0 NA intron (NR_026749, intron 1 of 9) intron (NR_026749, intron 1 of 9) 144 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 3197 chr4 100683622 100684424 + 0 NA Intergenic MIRb|SINE|MIR -53958 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 4241 chr8 19124619 19125575 + 0 NA Intergenic Intergenic -22065 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 1558 chr14 100353532 100354718 + 0 NA intron (NM_001008707, intron 5 of 22) intron (NM_001008707, intron 5 of 22) -83687 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 3370 chr5 66429024 66430276 + 0 NA intron (NM_001297651, intron 14 of 25) intron (NM_001297651, intron 14 of 25) 62967 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 3493 chr5 151496357 151497155 + 0 NA intron (NR_109876, intron 1 of 2) MIRc|SINE|MIR 158297 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 4371 chr8 102407549 102408425 + 0 NA Intergenic L2a|LINE|L2 26866 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 1513 chr14 83290513 83291612 + 0 NA Intergenic L3|LINE|CR1 -1201657 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 2175 chr2 15998475 15999372 + 0 NA Intergenic Intergenic -61598 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 1264 chr13 103279912 103280817 + 0 NA intron (NM_001330588, intron 8 of 29) intron (NM_001330588, intron 8 of 29) 31078 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 4468 chr9 7335945 7337284 + 0 NA Intergenic Intergenic 463192 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 TMEM261 C9orf123 transmembrane protein 261 protein-coding 159 chr1 84828559 84829264 + 0 NA Intergenic Intergenic 21573 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 747 chr11 109557744 109558742 + 0 NA Intergenic MIRc|SINE|MIR 265397 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 1633 chr15 69833179 69834126 + 0 NA Intergenic Intergenic -20407 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 47 chr1 19354126 19355229 + 0 NA Intergenic Intergenic -71851 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 4540 chr9 79554072 79554838 + 0 NA Intergenic Intergenic -33452 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 protein-coding 1942 chr18 11215965 11216522 + 0 NA Intergenic Intergenic -67482 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 1427 chr14 65329893 65331005 + 0 NA Intergenic Intergenic -40583 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 4217 chr8 4640888 4641631 + 0 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 211069 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1484 chr14 79313222 79314190 + 0 NA intron (NM_001330195, intron 10 of 20) intron (NM_001330195, intron 10 of 20) -352619 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 1017 chr12 103731742 103732971 + 0 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 157432 NR_103526 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 3619 chr6 24068855 24070624 + 0 NA Intergenic Intergenic -56675 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 2042 chr18 60349326 60350268 + 0 NA Intergenic Intergenic -32875 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 1057 chr12 111160517 111161260 + 0 NA intron (NM_001244974, intron 4 of 7) intron (NM_001244974, intron 4 of 7) 19895 NM_001244974 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 538 chr10 125635104 125636215 + 0 NA intron (NM_198148, intron 2 of 13) intron (NM_198148, intron 2 of 13) 15841 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 3748 chr6 109786736 109788269 + 0 NA promoter-TSS (NM_001286613) promoter-TSS (NM_001286613) -331 NM_001286613 64780 Hs.33476 NM_022765 ENSG00000135596 MICAL1 MICAL|MICAL-1|NICAL microtubule associated monooxygenase, calponin and LIM domain containing 1 protein-coding 4711 chrX 111299739 111300524 + 0 NA intron (NM_012471, intron 1 of 10) intron (NM_012471, intron 1 of 10) 25873 NM_012471 7224 Hs.657709 NM_012471 ENSG00000072315 TRPC5 PPP1R159|TRP5 transient receptor potential cation channel subfamily C member 5 protein-coding 521 chr10 112553375 112555518 + 0 NA intron (NM_001134363, intron 5 of 13) L1PB|LINE|L1 76216 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 1923 chr18 1658686 1659794 + 0 NA Intergenic L2b|LINE|L2 -299610 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 162 chr1 86901597 86902321 + 0 NA intron (NM_006536, intron 6 of 13) MER63B|DNA|hAT-Blackjack 12393 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 433 chr10 14689992 14690796 + 0 NA intron (NM_001282695, intron 2 of 5) UCON25|Unknown|Unknown -43977 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 880 chr12 22217713 22218560 + 0 NA exon (NM_018686, exon 8 of 8) exon (NM_018686, exon 8 of 8) 19028 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 3461 chr5 136777062 136777819 + 0 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 57578 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 protein-coding 1912 chr17 75045360 75046235 + 0 NA Intergenic Intergenic -38928 NM_001204408 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 2164 chr2 11679945 11681153 + 0 NA TTS (NR_039627) TTS (NR_039627) 254 NR_039627 100616469 NR_039627 ENSG00000264010 MIR4429 mir-4429 microRNA 4429 ncRNA 786 chr11 117335903 117337230 + 0 NA intron (NM_020693, intron 16 of 32) intron (NM_020693, intron 16 of 32) 137995 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 986 chr12 97622338 97623353 + 0 NA Intergenic L2b|LINE|L2 -235954 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript (non-protein coding) ncRNA 3293 chr5 7208976 7210135 + 0 NA Intergenic Intergenic 59912 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1008 chr12 101253272 101255120 + 0 NA intron (NM_001286615, intron 1 of 27) intron (NM_001286615, intron 1 of 27) -41228 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 4530 chr9 71417188 71418053 + 0 NA intron (NM_003558, intron 2 of 15) L2c|LINE|L2 22698 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 4148 chr7 133456630 133457370 + 0 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 52641 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 3022 chr3 170256457 170257139 + 0 NA intron (NM_020949, intron 1 of 7) intron (NM_020949, intron 1 of 7) 47065 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 201 chr1 112434700 112435678 + 0 NA intron (NM_004980, intron 2 of 7) L2a|LINE|L2 -17090 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 4082 chr7 115374199 115375052 + 0 NA Intergenic Intergenic 233742 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 4297 chr8 56888360 56888964 + 0 NA intron (NM_002350, intron 10 of 12) intron (NM_002350, intron 10 of 12) 96276 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 1401 chr14 59310729 59311924 + 0 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 16320 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 719 chr11 92440011 92441611 + 0 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 207983 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 4645 chrUn_gl000216 141482 150152 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 4305 chr8 61932458 61933859 + 0 NA Intergenic Intergenic -52851 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 1529 chr14 89750825 89751737 + 0 NA intron (NM_001085471, intron 3 of 6) intron (NM_001085471, intron 3 of 6) 132173 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 4289 chr8 43092461 43094042 + 0 NA Intergenic SAR|Satellite|Satellite -54334 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 902 chr12 41606360 41607452 + 0 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 24656 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 827 chr11 131845225 131846034 + 0 NA intron (NM_001144058, intron 1 of 7) intron (NM_001144058, intron 1 of 7) 64917 NM_016522 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 266 chr1 163624225 163625076 + 0 NA Intergenic Intergenic -231669 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 1742 chr16 51826623 51827854 + 0 NA Intergenic Intergenic 30808 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 1353 chr14 37197558 37199487 + 0 NA intron (NM_030631, intron 5 of 9) intron (NM_030631, intron 5 of 9) 71749 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 3128 chr4 53730918 53732366 + 0 NA exon (NM_023940, exon 4 of 4) exon (NM_023940, exon 4 of 4) 3147 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 2585 chr20 3635083 3636473 + 0 NA Intergenic Intergenic 8268 NM_022139 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 4404 chr8 125052199 125054196 + 0 NA promoter-TSS (NR_040044) promoter-TSS (NR_040044) -174 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 1624 chr15 63813586 63814803 + 0 NA intron (NR_046342, intron 1 of 15) AluJr|SINE|Alu 17484 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 4440 chr8 140267585 140268180 + 0 NA Intergenic Intergenic -341633 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 2892 chr3 107536212 107537110 + 0 NA Intergenic Intergenic 60254 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 1695 chr16 10102787 10103651 + 0 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 172705 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 97 chr1 43905330 43906313 + 0 NA intron (NM_015284, intron 50 of 70) intron (NM_015284, intron 50 of 70) -8389 NR_106793 102465440 NR_106793 ENSG00000274975 MIR6735 hsa-mir-6735 microRNA 6735 ncRNA 2378 chr2 108936666 108937517 + 0 NA Intergenic Intergenic -1603 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 2983 chr3 137791693 137792417 + 0 NA intron (NM_173543, intron 11 of 15) L1PB1|LINE|L1 40267 NM_001170538 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2 DAZ interacting zinc finger protein 1 like protein-coding 3645 chr6 38194249 38195112 + 0 NA intron (NM_001099272, intron 9 of 10) intron (NM_001099272, intron 9 of 10) -254692 NR_144472 101929425 Hs.665280 NR_144472 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 668 chr11 51579949 51581383 + 0 NA Intergenic ALR/Alpha|Satellite|centr 65384 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 774 chr11 115187906 115188695 + 0 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -15996 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 4306 chr8 62351423 62352325 + 0 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 151349 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 CRALBPL|RLBP1L1 clavesin 1 protein-coding 910 chr12 44782990 44783797 + 0 NA 3' UTR (NM_001286211, exon 7 of 7) 3' UTR (NM_001286211, exon 7 of 7) 486051 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 3463 chr5 138441053 138442019 + 0 NA intron (NM_001037633, intron 4 of 10) intron (NM_001037633, intron 4 of 10) 92529 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 1341 chr14 36710407 36711269 + 0 NA Intergenic Intergenic -64981 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) ncRNA 693 chr11 76564896 76566844 + 0 NA Intergenic Intergenic -6047 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 2701 chr21 14367042 14368687 + 0 NA Intergenic ALR/Alpha|Satellite|centr -42623 NR_026916 149992 Hs.558645 NM_153773 ANKRD30BP2 C21orf99|CT85|CTSP-1|CTSP1 ankyrin repeat domain 30B pseudogene 2 pseudo 4601 chr9 120162190 120163631 + 0 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 14407 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 4123 chr7 130043979 130044886 + 0 NA exon (NM_001257159, exon 5 of 9) exon (NM_001257159, exon 5 of 9) 24220 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 2684 chr20 59293781 59295145 + 0 NA Intergenic Intergenic 154843 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 3424 chr5 111909984 111910759 + 0 NA Intergenic Intergenic -53762 NR_104672 102467214 Hs.124613 NR_104672 LOC102467214 - uncharacterized LOC102467214 ncRNA 893 chr12 32177956 32178889 + 0 NA Intergenic MER51C|LTR|ERV1 66069 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 KIAA1551 C12orf35|UTA2-1 KIAA1551 protein-coding 2309 chr2 69449752 69450765 + 0 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 119444 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 3979 chr7 69426687 69428950 + 0 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 363913 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 3959 chr7 68148918 68150683 + 0 NA Intergenic Intergenic 664560 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 4348 chr8 93974444 93975581 + 0 NA intron (NM_001171797, intron 1 of 4) intron (NM_001171797, intron 1 of 4) 2805 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 4414 chr8 128201866 128202974 + 0 NA intron (NR_120364, intron 1 of 2) intron (NR_120364, intron 1 of 2) 7452 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLo-6|LINC01245 cancer susceptibility candidate 19 (non-protein coding) ncRNA 2558 chr2 231750039 231751135 + 0 NA promoter-TSS (NR_038238) promoter-TSS (NR_038238) -674 NR_038238 151484 Hs.559309 NR_038238 ENSG00000232520 LOC151484 - uncharacterized LOC151484 ncRNA 1085 chr12 119402318 119403471 + 0 NA Intergenic L2a|LINE|L2 -16406 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 755 chr11 111000137 111001237 + 0 NA Intergenic Intergenic -126020 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 1714 chr16 19812428 19813236 + 0 NA intron (NR_130968, intron 7 of 8) AluJb|SINE|Alu -83340 NM_001012991 400506 Hs.585209 NM_001012991 ENSG00000103550 KNOP1 101F10.1|C16orf88|FAM191A|TSG118 lysine rich nucleolar protein 1 protein-coding 3942 chr7 55717877 55718502 + 0 NA Intergenic Intergenic 37536 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FK506 binding protein 9 pseudogene 1 pseudo 1403 chr14 59410909 59411649 + 0 NA intron (NR_110547, intron 3 of 5) intron (NR_110547, intron 3 of 5) 116273 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 2268 chr2 52933741 52934712 + 0 NA Intergenic Intergenic -4473 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 1497 chr14 80544550 80545576 + 0 NA Intergenic Intergenic -132699 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 497 chr10 90672880 90673487 + 0 NA exon (NM_020799, exon 6 of 11) exon (NM_020799, exon 6 of 11) -19258 NR_125373 100132116 Hs.713690 NR_125373 ENSG00000180139 ACTA2-AS1 ZXF1|uc001kfo.1 ACTA2 antisense RNA 1 ncRNA 4236 chr8 18438134 18438957 + 0 NA intron (NM_015310, intron 12 of 15) intron (NM_015310, intron 12 of 15) 189790 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 4615 chr9 129200536 129201282 + 0 NA intron (NM_033446, intron 7 of 9) intron (NM_033446, intron 7 of 9) -28126 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-protein coding RNA, repressor of NFAT ncRNA 411 chr1 244402116 244403404 + 0 NA Intergenic Intergenic -113177 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 169 chr1 88148748 88149704 + 0 NA Intergenic Intergenic -311888 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 2579 chr20 2226613 2227935 + 0 NA Intergenic MER68-int|LTR|ERVL 39700 NM_001287682 388780 Hs.132163 NM_001287682 LOC388780 - uncharacterized LOC388780 protein-coding 398 chr1 231819649 231821081 + 0 NA intron (NM_001164556, intron 1 of 4) L1ME3D|LINE|L1 57804 NM_001164541 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 disrupted in schizophrenia 1 protein-coding 2016 chr18 47536023 47537018 + 0 NA intron (NM_001080467, intron 4 of 39) intron (NM_001080467, intron 4 of 39) 116413 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 3182 chr4 91108137 91109077 + 0 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -47575 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 3934 chr7 44958730 44959563 + 0 NA Intergenic Intergenic -34162 NM_033224 5814 Hs.349150 NM_033224 ENSG00000146676 PURB PURBETA purine rich element binding protein B protein-coding 942 chr12 72340716 72342049 + 0 NA intron (NM_173353, intron 4 of 10) MER53|DNA|hAT 8756 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 955 chr12 78569997 78571211 + 0 NA intron (NM_014903, intron 26 of 38) intron (NM_014903, intron 26 of 38) 182922 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LOC105369860 - uncharacterized LOC105369860 ncRNA 1376 chr14 45457650 45458515 + 0 NA intron (NM_015091, intron 1 of 18) MLT1F1|LTR|ERVL-MaLR 26689 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 FAM179B KIAA0423 family with sequence similarity 179 member B protein-coding 1888 chr17 58410980 58411816 + 0 NA intron (NM_032582, intron 2 of 33) Tigger2b_Pri|DNA|TcMar-Tigger 58188 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 3267 chr4 183223733 183224554 + 0 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 59559 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 4119 chr7 129990977 129992987 + 0 NA intron (NM_001127441, intron 6 of 13) intron (NM_001127441, intron 6 of 13) 7352 NM_080385 93979 Hs.567642 NM_080385 ENSG00000158525 CPA5 - carboxypeptidase A5 protein-coding 2369 chr2 102179514 102180207 + 0 NA Intergenic Intergenic -88695 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 2647 chr20 37614226 37614918 + 0 NA intron (NM_001190809, intron 3 of 20) intron (NM_001190809, intron 3 of 20) 23591 NM_021931 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 190 chr1 106605753 106606968 + 0 NA Intergenic Intergenic -444803 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 2816 chr3 25589451 25589999 + 0 NA intron (NR_110892, intron 3 of 6) intron (NR_110892, intron 3 of 6) 89924 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1808 chr17 25791396 25792077 + 0 NA Intergenic AluJo|SINE|Alu -7300 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 1739 chr16 51068188 51069004 + 0 NA intron (NR_110913, intron 2 of 2) intron (NR_110913, intron 2 of 2) 16927 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 601 chr11 19672316 19673381 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -62033 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 822 chr11 126848409 126849808 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) 9330 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 2802 chr3 5259329 5260172 + 0 NA 3' UTR (NM_014674, exon 12 of 12) 3' UTR (NM_014674, exon 12 of 12) 30391 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 231 chr1 144674889 144676005 + 0 NA intron (NM_001037501, intron 7 of 20) L2|LINE|L2 60488 NR_102405 728841 Hs.445080 NM_001037501 ENSG00000270231 NBPF8 NBPF8P neuroblastoma breakpoint family member 8 protein-coding 4700 chrX 107617802 107618740 + 0 NA intron (NM_001847, intron 2 of 44) intron (NM_001847, intron 2 of 44) 63389 NM_001287760 1288 Hs.145586 NM_001847 ENSG00000197565 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen type IV alpha 6 chain protein-coding 551 chr11 3073093 3073933 + 0 NA intron (NM_001014437, intron 1 of 22) MIRb|SINE|MIR 5168 NM_001014437 833 Hs.274873 NM_001751 ENSG00000110619 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 4720 chrX 129975289 129976038 + 0 NA intron (NM_006375, intron 2 of 14) intron (NM_006375, intron 2 of 14) 39053 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 504 chr10 95609082 95609973 + 0 NA Intergenic Intergenic -44200 NR_144336 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 3753 chr6 110643045 110644035 + 0 NA intron (NM_001123364, intron 2 of 4) intron (NM_001123364, intron 2 of 4) 35935 NM_001123364 728464 Hs.722171 NM_001123364 ENSG00000053328 METTL24 C6orf186|dJ71D21.2 methyltransferase like 24 protein-coding 2823 chr3 34824170 34825100 + 0 NA Intergenic Intergenic 610880 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 3894 chr7 26388033 26390025 + 0 NA intron (NM_001199835, intron 2 of 6) intron (NM_001199835, intron 2 of 6) -11475 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 3177 chr4 87891559 87892573 + 0 NA intron (NM_001166693, intron 2 of 20) L2a|LINE|L2 35912 NM_001166693 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 3387 chr5 73380900 73382324 + 0 NA Intergenic Intergenic 222538 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 4583 chr9 108200364 108200937 + 0 NA 3' UTR (NM_001330731, exon 16 of 16) 3' UTR (NM_001330731, exon 16 of 16) -9665 NM_001330739 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 1966 chr18 31384220 31386117 + 0 NA Intergenic Intergenic 226627 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 1665 chr15 92468734 92469687 + 0 NA intron (NM_013272, intron 2 of 9) intron (NM_013272, intron 2 of 9) 71680 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 1782 chr16 77826741 77827954 + 0 NA intron (NM_020927, intron 1 of 8) MER94|DNA|hAT-Blackjack 4886 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 3873 chr7 13726830 13727701 + 0 NA Intergenic Intergenic 298874 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 2698 chr21 10843123 10844535 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 147114 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 2252 chr2 50170699 50171827 + 0 NA intron (NM_001135659, intron 22 of 23) intron (NM_001135659, intron 22 of 23) 30078 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 2506 chr2 201090914 201092485 + 0 NA Intergenic Intergenic -78905 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 3403 chr5 94709562 94710498 + 0 NA Intergenic Intergenic -17018 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 792 chr11 120748035 120749150 + 0 NA intron (NM_001282470, intron 10 of 19) intron (NM_001282470, intron 10 of 19) 16914 NR_132790 101929227 Hs.627156 NR_132790 ENSG00000250493 LOC101929227 - uncharacterized LOC101929227 ncRNA 3122 chr4 48892988 48893800 + 0 NA intron (NR_104589, intron 3 of 3) intron (NR_104589, intron 3 of 3) 15451 NM_001014446 132299 Hs.95835 NM_152398 ENSG00000145247 OCIAD2 - OCIA domain containing 2 protein-coding 1248 chr13 101593034 101593922 + 0 NA intron (NR_047015, intron 1 of 2) intron (NR_047015, intron 1 of 2) 3140 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 4727 chrX 149260509 149261621 + 0 NA Intergenic Intergenic -135174 NR_031748 100313839 NR_031748 ENSG00000252454 MIR2114 - microRNA 2114 ncRNA 3368 chr5 66053457 66054356 + 0 NA intron (NM_198828, intron 1 of 5) intron (NM_198828, intron 1 of 5) -70698 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 4205 chr8 1800040 1801103 + 0 NA intron (NM_001308153, intron 3 of 29) intron (NM_001308153, intron 3 of 29) 28429 NM_014629 9639 Hs.98594 NM_014629 ENSG00000104728 ARHGEF10 GEF10|SNCV Rho guanine nucleotide exchange factor 10 protein-coding 2401 chr2 130673315 130674337 + 0 NA Intergenic Intergenic -6924 NR_110285 101927924 Hs.570248 NR_110285 ENSG00000237574 LINC01856 - long intergenic non-protein coding RNA 1856 ncRNA 3994 chr7 77467966 77468718 + 0 NA intron (NM_001127358, intron 1 of 17) intron (NM_001127358, intron 1 of 17) -1105 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 1516 chr14 85020016 85020699 + 0 NA Intergenic Intergenic -833262 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 3733 chr6 101915478 101916255 + 0 NA intron (NM_001166247, intron 1 of 16) LTR78B|LTR|ERV1 69005 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 924 chr12 59363741 59365327 + 0 NA Intergenic Intergenic -50215 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 2053 chr18 65899409 65900959 + 0 NA Intergenic ERVL-int|LTR|ERVL 482169 NM_019022 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 2462 chr2 168201803 168202599 + 0 NA Intergenic L2c|LINE|L2 158408 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 4064 chr7 108378328 108379191 + 0 NA Intergenic Intergenic 145885 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 2301 chr2 66705674 66706569 + 0 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -38659 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 4162 chr7 139275989 139277375 + 0 NA intron (NM_001113239, intron 12 of 14) intron (NM_001113239, intron 12 of 14) 68008 NM_001080511 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 2027 chr18 54282872 54284116 + 0 NA exon (NM_004786, exon 5 of 8) exon (NM_004786, exon 5 of 8) 22426 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 2481 chr2 176668554 176669574 + 0 NA Intergenic Intergenic 198009 NM_001305010 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|Ul|ulnaless lunapark, ER junction formation factor protein-coding 172 chr1 89719991 89721338 + 0 NA Intergenic L1MA2|LINE|L1 17880 NM_052942 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 3922 chr7 38968395 38969720 + 0 NA Intergenic Intergenic -20257 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41, HOPS complex subunit protein-coding 4045 chr7 104140593 104141406 + 0 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 171895 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 lipoma HMGIC fusion partner-like 3 protein-coding 1366 chr14 42691956 42693021 + 0 NA Intergenic Intergenic 616429 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 4252 chr8 23836517 23837412 + 0 NA Intergenic AmnSINE1|SINE|Deu -124644 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 223 chr1 119046709 119047579 + 0 NA Intergenic Intergenic -319296 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 1255 chr13 102601396 102602264 + 0 NA intron (NM_001321945, intron 2 of 5) intron (NM_001321945, intron 2 of 5) 18266 NR_039603 100616110 NR_039603 ENSG00000265164 MIR2681 - microRNA 2681 ncRNA 1043 chr12 107874353 107875371 + 0 NA intron (NM_001347944, intron 1 of 14) MER20|DNA|hAT-Charlie -99772 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 2660 chr20 46871893 46872669 + 0 NA Intergenic MER113|DNA|hAT-Charlie -116373 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 4571 chr9 97205187 97205919 + 0 NA intron (NM_032558, intron 5 of 11) intron (NM_032558, intron 5 of 11) 68720 NM_032558 84641 Hs.555996 NM_032558 ENSG00000148110 MFSD14B HIATL1 major facilitator superfamily domain containing 14B protein-coding 1852 chr17 43268097 43268910 + 0 NA Intergenic Intergenic -19651 NR_135646 105371795 Hs.569733 NR_135646 ENSG00000267288 LOC105371795 - uncharacterized LOC105371795 ncRNA 3548 chr5 175250612 175251326 + 0 NA intron (NM_006650, intron 2 of 4) intron (NM_006650, intron 2 of 4) 27359 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 639 chr11 30554769 30555769 + 0 NA intron (NM_001145399, intron 3 of 6) intron (NM_001145399, intron 3 of 6) 46771 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 3449 chr5 131763649 131764497 + 0 NA intron (NR_045116, intron 2 of 3) L2a|LINE|L2 17608 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 1505 chr14 81816729 81817532 + 0 NA intron (NM_033104, intron 4 of 5) intron (NM_033104, intron 4 of 5) 76426 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 2248 chr2 50013763 50014680 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 187120 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 4746 chrY 58971943 58973437 + 0 NA Intergenic (CATTC)n|Satellite|Satellite -127713 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 2809 chr3 11004067 11004828 + 0 NA Intergenic Intergenic -29973 NM_003042 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 1227 chr13 98706864 98708230 + 0 NA Intergenic Intergenic -87269 NM_001286839 10160 Hs.403917 NM_005766 ENSG00000152767 FARP1 CDEP|FARP1-IT1|PLEKHC2|PPP1R75 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding 1417 chr14 61724173 61725137 + 0 NA Intergenic Intergenic 23875 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 216 chr1 116947237 116948671 + 0 NA TTS (NM_000701) TTS (NM_000701) 13227 NR_024126 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 3351 chr5 51846706 51847648 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -236597 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 3478 chr5 145999883 146000719 + 0 NA intron (NM_181675, intron 7 of 9) intron (NM_181675, intron 7 of 9) -104625 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding 1951 chr18 22572016 22573379 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR 266952 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 3600 chr6 20745044 20745811 + 0 NA intron (NM_017774, intron 6 of 15) intron (NM_017774, intron 6 of 15) 210739 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 2766 chr22 18327926 18328513 + 0 NA intron (NM_001122731, intron 18 of 19) L2c|LINE|L2 61433 NM_001122731 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 3661 chr6 41283034 41284080 + 0 NA Intergenic Intergenic -19971 NM_004828 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 4032 chr7 95163660 95164690 + 0 NA intron (NM_016116, intron 3 of 4) intron (NM_016116, intron 3 of 4) 48962 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 2928 chr3 123032971 123034552 + 0 NA intron (NM_183357, intron 11 of 20) intron (NM_183357, intron 11 of 20) 101428 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 1794 chr16 84800205 84801225 + 0 NA intron (NR_073578, intron 7 of 10) intron (NR_073578, intron 7 of 10) -52872 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 2193 chr2 29577412 29578393 + 0 NA intron (NM_004304, intron 5 of 28) AluY|SINE|Alu 120341 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 2636 chr20 24455871 24456576 + 0 NA intron (NM_001323607, intron 1 of 3) intron (NM_001323607, intron 1 of 3) 5781 NM_001323607 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 3522 chr5 158121109 158122099 + 0 NA Intergenic L2c|LINE|L2 -284823 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LOC101927697 - uncharacterized LOC101927697 ncRNA 676 chr11 62301565 62302373 + 0 NA intron (NM_001346445, intron 4 of 4) intron (NM_001346445, intron 4 of 4) 11190 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 277 chr1 165190733 165192271 + 0 NA intron (NM_177398, intron 4 of 8) intron (NM_177398, intron 4 of 8) 133976 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 3191 chr4 98063871 98064548 + 0 NA Intergenic Intergenic -223868 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 3306 chr5 8843195 8844392 + 0 NA intron (NR_109932, intron 1 of 2) intron (NR_109932, intron 1 of 2) 3949 NR_109932 101929284 Hs.403715 NR_109932 LOC101929284 - uncharacterized LOC101929284 ncRNA 2640 chr20 30727319 30728401 + 0 NA intron (NM_014742, intron 3 of 17) L2c|LINE|L2 30551 NM_014742 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 2700 chr21 11185856 11186971 + 0 NA Intergenic HSATI|Satellite|Satellite -87476 NM_001187 574 Hs.545789 NM_001187 BAGE BAGE1|CT2.1 B melanoma antigen protein-coding 1183 chr13 51306753 51307467 + 0 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -74881 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000237152 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 2747 chr21 42018326 42019159 + 0 NA intron (NM_001389, intron 3 of 32) intron (NM_001389, intron 3 of 32) -16049 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 4312 chr8 72969500 72970297 + 0 NA intron (NM_007332, intron 9 of 26) intron (NM_007332, intron 9 of 26) 17921 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS transient receptor potential cation channel subfamily A member 1 protein-coding 2215 chr2 40327714 40329128 + 0 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 183647 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 2671 chr20 56852902 56853732 + 0 NA intron (NR_003505, intron 3 of 16) intron (NR_003505, intron 3 of 16) 31178 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 123 chr1 56613017 56614044 + 0 NA Intergenic MIR3|SINE|MIR 431727 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 304 chr1 179339412 179340731 + 0 NA intron (NR_073544, intron 4 of 25) MIRc|SINE|MIR 4964 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 2417 chr2 136894010 136895053 + 0 NA Intergenic Intergenic -18806 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 1631 chr15 69449154 69449999 + 0 NA intron (NR_031680, intron 3 of 4) intron (NR_031680, intron 3 of 4) -3360 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 2294 chr2 66018607 66019722 + 0 NA Intergenic Intergenic -359508 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 1369 chr14 43188251 43189216 + 0 NA Intergenic Intergenic 1112674 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1151 chr13 37239674 37241488 + 0 NA Intergenic Intergenic -7468 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 54 chr1 23448172 23449472 + 0 NA intron (NM_033631, intron 1 of 4) intron (NM_033631, intron 1 of 4) 46529 NM_001142546 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 3347 chr5 51432559 51433672 + 0 NA Intergenic Intergenic -650659 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 1204 chr13 79560566 79561819 + 0 NA Intergenic Intergenic -147007 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 839 chr12 2569089 2570180 + 0 NA intron (NM_001129830, intron 5 of 47) intron (NM_001129830, intron 5 of 47) 190692 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 2520 chr2 208331344 208332419 + 0 NA Intergenic Intergenic -62735 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 88 chr1 38528434 38529244 + 0 NA Intergenic Intergenic -16389 NM_002699 5453 Hs.1837 NM_002699 ENSG00000185668 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 1009 chr12 101491669 101493077 + 0 NA intron (NM_001286616, intron 20 of 26) intron (NM_001286616, intron 20 of 26) 111643 NM_145913 160728 Hs.444536 NM_145913 ENSG00000256870 SLC5A8 AIT|SMCT|SMCT1 solute carrier family 5 member 8 protein-coding 403 chr1 233325546 233326813 + 0 NA intron (NM_014801, intron 15 of 33) intron (NM_014801, intron 15 of 33) 105280 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex homolog 2 (Drosophila) protein-coding 3438 chr5 123737277 123738534 + 0 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 36308 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 1829 chr17 32700723 32702175 + 0 NA Intergenic MamRep434|DNA|TcMar-Tigger -11197 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 3698 chr6 70785470 70787243 + 0 NA intron (NM_001858, intron 15 of 50) intron (NM_001858, intron 15 of 50) 206555 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 1629 chr15 68929784 68930734 + 0 NA intron (NM_001190457, intron 1 of 11) intron (NM_001190457, intron 1 of 11) -3583 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 1918 chr17 78758849 78760035 + 0 NA intron (NM_001163034, intron 6 of 29) MER65C|LTR|ERV1 19990 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 2755 chr21 43199211 43200702 + 0 NA Intergenic Intergenic -12707 NM_020639 54101 Hs.517310 NM_020639 ENSG00000183421 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor interacting serine/threonine kinase 4 protein-coding 4197 chr7 158552401 158553170 + 0 NA exon (NM_020728, exon 12 of 22) exon (NM_020728, exon 12 of 22) -55263 NM_001281932 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 3237 chr4 151017514 151018476 + 0 NA intron (NM_001040260, intron 1 of 15) intron (NM_001040260, intron 1 of 15) 18569 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 4487 chr9 13755756 13756918 + 0 NA Intergenic Intergenic -171633 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 3150 chr4 76059963 76060887 + 0 NA Intergenic Intergenic -164853 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 4678 chrX 20479582 20480205 + 0 NA Intergenic Intergenic -195143 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 703 chr11 78638249 78639147 + 0 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -352789 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 2729 chr21 36691468 36693516 + 0 NA Intergenic Intergenic 260570 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 3164 chr4 81733057 81734123 + 0 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -218529 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 4366 chr8 102166732 102168859 + 0 NA Intergenic Intergenic 50165 NM_001042510 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 3454 chr5 135756069 135756881 + 0 NA Intergenic Intergenic -55311 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 4382 chr8 110670631 110672160 + 0 NA intron (NM_001099744, intron 1 of 7) intron (NM_001099744, intron 1 of 7) -10263 NM_001099749 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 3304 chr5 8504021 8504842 + 0 NA Intergenic Intergenic 43393 NR_039663 100616142 NR_039663 ENSG00000247516 MIR4458 mir-4458 microRNA 4458 ncRNA 2885 chr3 100173437 100173968 + 0 NA intron (NM_001085451, intron 3 of 3) Charlie21a|DNA|hAT-Charlie -37761 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 1461 chr14 78540649 78541922 + 0 NA Intergenic Intergenic -95431 NM_001330195 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2488 chr2 179088005 179088866 + 0 NA intron (NM_001201481, intron 1 of 23) intron (NM_001201481, intron 1 of 23) 29227 NM_032523 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 3106 chr4 25242682 25243380 + 0 NA intron (NR_144633, intron 1 of 9) HERV9-int|LTR|ERV1 7378 NM_018323 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 2487 chr2 177767119 177767664 + 0 NA Intergenic MIRb|SINE|MIR 264909 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 3188 chr4 94068344 94069348 + 0 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -681232 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 3869 chr7 7168104 7168816 + 0 NA Intergenic Intergenic -32043 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 1985 chr18 36684693 36685714 + 0 NA Intergenic Intergenic 516936 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 2669 chr20 55718172 55719679 + 0 NA Intergenic MIRc|SINE|MIR -69827 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 1691 chr16 8814102 8815005 + 0 NA promoter-TSS (NM_001127448) promoter-TSS (NM_001127448) -20 NM_001127448 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 3567 chr6 13112977 13113775 + 0 NA intron (NM_001322314, intron 2 of 12) AluJr|SINE|Alu 99488 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 2003 chr18 43003421 43005034 + 0 NA intron (NM_001242692, intron 1 of 20) MIR3|SINE|MIR 82774 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 3666 chr6 43902743 43903753 + 0 NA intron (NR_024478, intron 1 of 1) L2b|LINE|L2 44483 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 HI-LNC77 long intergenic non-protein coding RNA 1512 ncRNA