PeakID (cmd=annotatePeaks.pl FoxB1_DMS79_H187_peaks.intersect.u.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 127 chr2 90371599 90374379 + 0 NA Intergenic HSATII|Satellite|Satellite 1261105 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 32 chr10 42354961 42367059 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 502483 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 276 chr9 66970923 66971889 + 0 NA intron (NR_135597, intron 4 of 4).3 ALR/Alpha|Satellite|centr 48439 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 90 chr16 33987417 33988576 + 0 NA Intergenic ALR/Alpha|Satellite|centr -25493 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 206 chr4 49130003 49133272 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 142978 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 118 chr2 89850135 89851180 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 738773 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 71 chr12 38016171 38016597 + 0 NA Intergenic ALR/Alpha|Satellite|centr -694173 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 102 chr16 46499886 46500534 + 0 NA Intergenic HSATII|Satellite|Satellite 102799 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 358 chrX 61703326 61708129 + 0 NA Intergenic ALR/Alpha|Satellite|centr 865491 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 331 chrUn_gl000216 163007 165524 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 16 chr10 38815956 38816745 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 99276 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 55 chr11 51581935 51585492 + 0 NA Intergenic ALR/Alpha|Satellite|centr 68431 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 84 chr16 33899512 33900222 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 62636 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 233 chr5 49428609 49431099 + 0 NA Intergenic ALR/Alpha|Satellite|centr 307380 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 259 chr7 61990519 61991150 + 0 NA Intergenic ALR/Alpha|Satellite|centr 773600 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 194 chr22 20656285 20656743 + 0 NA intron (NR_136569, intron 1 of 8) HSATI|Satellite|Satellite 314 NR_136569 729461 Hs.629498 NM_201401 ENSG00000274044 LINC01660 - long intergenic non-protein coding RNA 1660 ncRNA 57 chr11 51587971 51589509 + 0 NA Intergenic ALR/Alpha|Satellite|centr 73458 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 368 chrY 10100256 10101605 + 0 NA Intergenic ALR/Alpha|Satellite|centr 352523 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 220 chr4 49651615 49660128 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 667212 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 316 chrUn_gl000216 19707 20560 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 163 chr21 10709120 10710642 + 0 NA Intergenic ALR/Alpha|Satellite|centr 281062 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 395 chrY 58972389 58973341 + 0 NA Intergenic (CATTC)n|Satellite|Satellite -127538 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 89 chr16 33983827 33984927 + 0 NA Intergenic ALR/Alpha|Satellite|centr -21874 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 175 chr21 10780388 10780957 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 210271 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 31 chr10 39152297 39152762 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 162802 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 35 chr10 42397769 42401522 + 0 NA Intergenic ALR/Alpha|Satellite|centr 463848 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 11 chr1 145000521 145001568 + 0 NA intron (NR_144517, intron 3 of 42) intron (NR_144517, intron 3 of 42) -3933 NM_001195260 9659 Hs.584841 NM_014644 ENSG00000178104 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 347 chrUn_gl000225 128950 132211 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 208 chr4 49136379 49137507 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 148284 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 93 chr16 34180904 34181631 + 0 NA Intergenic HSATII|Satellite|Satellite -218764 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 292 chr9_gl000199_random 33627 35189 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 378 chrY 13689124 13690349 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 843653 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 325 chrUn_gl000216 145812 147557 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 29 chr10 39138054 39138289 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 148444 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 350 chrX 58559397 58560092 + 0 NA Intergenic ALR/Alpha|Satellite|centr -622677 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 291 chr9_gl000199_random 30476 32194 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 374 chrY 13452803 13454128 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 1079924 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 199 chr3 196625551 196626017 + 0 NA intron (NM_152699, intron 2 of 9) AluY|SINE|Alu 31057 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO1/sentrin specific peptidase 5 protein-coding 114 chr19_gl000208_random 2536 2901 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 226 chr5 49411574 49412800 + 0 NA Intergenic ALR/Alpha|Satellite|centr 325047 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 58 chr11 51590071 51591675 + 0 NA Intergenic ALR/Alpha|Satellite|centr 75591 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 211 chr4 49142245 49143323 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 154125 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 153 chr20 26317782 26318704 + 0 NA Intergenic ALR/Alpha|Satellite|centr -128374 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 15 chr10 38781953 38782589 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 65197 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 382 chrY 13712509 13713360 + 0 NA Intergenic Intergenic 820455 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 337 chrUn_gl000225 24586 26835 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 101 chr16 46498885 46499499 + 0 NA Intergenic HSATII|Satellite|Satellite 103817 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 73 chr12 103634957 103635397 + 0 NA intron (NR_103526, intron 10 of 10) intron (NR_103526, intron 10 of 10) 89557 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 340 chrUn_gl000225 84704 86765 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 76 chr14 19041916 19042260 + 0 NA Intergenic ALR/Alpha|Satellite|centr -335506 NM_001013354 440153 Hs.534880 NM_001013354 ENSG00000257115 OR11H12 - olfactory receptor family 11 subfamily H member 12 protein-coding 311 chrUn_gl000216 11015 12168 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 62 chr12 34831136 34831810 + 0 NA Intergenic ALR/Alpha|Satellite|centr 656257 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 67 chr12 34850694 34851219 + 0 NA Intergenic ALR/Alpha|Satellite|centr 675740 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 241 chr7 20183 20628 + 0 NA Intergenic Intergenic 129033 NR_134325 102723672 Hs.605204 NR_134325 LOC102723672 - uncharacterized LOC102723672 ncRNA 198 chr22 23827804 23828167 + 0 NA intron (NR_110539, intron 1 of 11) intron (NR_110539, intron 1 of 11) 1182 NR_110539 388882 Hs.542766 NR_110539 ENSG00000178248 LINC01658 - long intergenic non-protein coding RNA 1658 ncRNA 139 chr2 91606436 91610463 + 0 NA Intergenic HSATII|Satellite|Satellite 239526 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 389 chrY 13851906 13852247 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 681313 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 129 chr2 90377750 90378954 + 0 NA Intergenic HSATII|Satellite|Satellite 1266468 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 327 chrUn_gl000216 150608 153860 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 320 chrUn_gl000216 75406 76405 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 280 chr9 68423936 68425926 + 0 NA Intergenic Intergenic -9543 NR_039688 100616184 NR_039688 ENSG00000276029 MIR4477A - microRNA 4477a ncRNA 273 chr9 66823170 66824130 + 0 NA Intergenic ALR/Alpha|Satellite|centr -99317 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 236 chr6 61901501 61902414 + 0 NA Intergenic ALR/Alpha|Satellite|centr -382051 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 361 chrX 61839146 61839677 + 0 NA Intergenic ALR/Alpha|Satellite|centr 731807 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 249 chr7 61756216 61756982 + 0 NA Intergenic HSATII|Satellite|Satellite 1007835 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 218 chr4 49640725 49646234 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 654820 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 202 chr4 49117192 49117719 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 128796 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 168 chr21 10726941 10727713 + 0 NA Intergenic ALR/Alpha|Satellite|centr 263616 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 184 chr21 14338792 14339492 + 0 NA Intergenic ALR/Alpha|Satellite|centr -71345 NR_026916 149992 Hs.558645 NM_153773 ANKRD30BP2 C21orf99|CT85|CTSP-1|CTSP1 ankyrin repeat domain 30B pseudogene 2 pseudo 135 chr2 91599040 91600318 + 0 NA Intergenic HSATII|Satellite|Satellite 248296 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 14 chr10 38777857 38778316 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 61012 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 348 chrUn_gl000225 196778 197155 + 0 NA NA (GAATG)n|Satellite|Satellite NA NA 145 chr2 92289764 92292646 + 0 NA Intergenic ALR/Alpha|Satellite|centr 162046 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 49 chr11 51569281 51570561 + 0 NA Intergenic ALR/Alpha|Satellite|centr 54639 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 178 chr21 10819280 10820338 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 171134 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 24 chr10 39107098 39107692 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 117668 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 285 chr9 70000503 70000876 + 0 NA Intergenic ALR/Alpha|Satellite|centr 178126 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 140 chr2 91610510 91615073 + 0 NA Intergenic Intergenic 235184 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 124 chr2 89869074 89872565 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 758935 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 104 chr17 25263594 25265297 + 0 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat 151822 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 131 chr2 90382672 90384846 + 0 NA Intergenic HSATII|Satellite|Satellite 1271875 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 181 chr21 10855543 10856425 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 134959 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 385 chrY 13810742 13811493 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 722272 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 234 chr5 49431191 49441608 + 0 NA Intergenic ALR/Alpha|Satellite|centr 300835 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 314 chrUn_gl000216 18134 18767 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 307 chrUn_gl000216 4804 5382 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 154 chr20 26319226 26319559 + 0 NA Intergenic ALR/Alpha|Satellite|centr -129523 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 23 chr10 39106216 39106625 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 116693 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 388 chrY 13843447 13844157 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 689587 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 364 chrX 77359270 77359868 + 0 NA promoter-TSS (NM_000291) promoter-TSS (NM_000291) -97 NM_000291 5230 Hs.78771 NM_000291 ENSG00000102144 PGK1 HEL-S-68p|MIG10|PGKA phosphoglycerate kinase 1 protein-coding 96 chr16 46414785 46415192 + 0 NA Intergenic HSATII|Satellite|Satellite 188021 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 355 chrX 61682013 61690589 + 0 NA Intergenic ALR/Alpha|Satellite|centr 884917 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 159 chr20 48983046 48983758 + 0 NA Intergenic Intergenic -45523 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 326 chrUn_gl000216 148497 149237 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 160 chr21 10085487 10086864 + 0 NA Intergenic (GAATG)n|Simple_repeat|Simple_repeat -117581 NR_038328 100132288 Hs.487562 NM_174948 ENSG00000188681 TEKT4P2 MAFIPL|TEKT4P tektin 4 pseudogene 2 pseudo 47 chr11 50743075 50743544 + 0 NA Intergenic ALR/Alpha|Satellite|centr 374991 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DEAH-box helicase 9 pseudogene pseudo 367 chrY 10089172 10090639 + 0 NA Intergenic ALR/Alpha|Satellite|centr 341498 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 8 chr1 121478201 121480553 + 0 NA Intergenic ALR/Alpha|Satellite|centr 218467 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 98 chr16 46416250 46435755 + 0 NA Intergenic HSATII|Satellite|Satellite 177007 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 335 chrUn_gl000225 16426 17575 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 37 chr10 42404289 42405025 + 0 NA Intergenic ALR/Alpha|Satellite|centr 458836 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 43 chr10 42814958 42815501 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 48264 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 270 chr9 42818994 42819393 + 0 NA intron (NR_135597, intron 4 of 4) ALR/Alpha|Satellite|centr 38009 NR_136299 101929583 Hs.404758 NR_136299 LOC101929583 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene pseudo 195 chr22 20656925 20657535 + 0 NA promoter-TSS (NR_136569) promoter-TSS (NR_136569) -402 NR_136569 729461 Hs.629498 NM_201401 ENSG00000274044 LINC01660 - long intergenic non-protein coding RNA 1660 ncRNA 5 chr1 121363220 121363815 + 0 NA Intergenic ALR/Alpha|Satellite|centr 102607 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 391 chrY 13868286 13868710 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 664891 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 21 chr10 39085737 39086305 + 0 NA Intergenic Intergenic 96294 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 288 chr9 72653032 72653559 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -5202 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 193 chr22 18883630 18884405 + 0 NA Intergenic HSATI|Satellite|Satellite -2073 NR_136571 100996432 Hs.631668 NR_136571 LINC01663 - long intergenic non-protein coding RNA 1663 ncRNA 119 chr2 89852704 89853753 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 741344 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 324 chrUn_gl000216 142681 145797 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 180 chr21 10843218 10843802 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 147433 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 244 chr7 57994713 57995941 + 0 NA Intergenic ALR/Alpha|Satellite|centr 485444 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 162 chr21 10704265 10706896 + 0 NA Intergenic ALR/Alpha|Satellite|centr 285363 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 351 chrX 58560286 58560693 + 0 NA Intergenic ALR/Alpha|Satellite|centr -623422 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 246 chr7 61083177 61084156 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1680768 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 240 chr6 74230508 74231013 + 0 NA promoter-TSS (NM_001402) promoter-TSS (NM_001402) -5 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 74 chr12 117923702 117924232 + 0 NA intron (NM_173598, intron 14 of 19) intron (NM_173598, intron 14 of 19) -124360 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 334 chrUn_gl000225 12461 15276 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 61 chr11 55024205 55024829 + 0 NA Intergenic ALR/Alpha|Satellite|centr -5141 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 230 chr5 49419978 49422070 + 0 NA Intergenic ALR/Alpha|Satellite|centr 316210 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 299 chr9_gl000199_random 133057 157882 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 115 chr19_gl000208_random 48021 48629 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 377 chrY 13686840 13689002 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 845468 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 103 chr17 22244414 22263009 + 0 NA Intergenic ALR/Alpha|Satellite|centr 231274 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2-like 1 protein-coding 201 chr4 49093251 49117106 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 116519 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 379 chrY 13694486 13696033 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 838130 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 113 chr19_gl000208_random 1 673 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 152 chr20 26305600 26305857 + 0 NA Intergenic ALR/Alpha|Satellite|centr -115859 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 189 chr22 18687969 18688778 + 0 NA intron (NR_136570, intron 1 of 11) HSATI|Satellite|Satellite 257 NR_136570 100996415 Hs.645542 NR_136570 LOC100996415 - uncharacterized LOC100996415 ncRNA 342 chrUn_gl000225 97559 99789 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 295 chr9_gl000199_random 87232 125927 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 266 chr8 43096396 43097352 + 0 NA Intergenic SAR|Satellite|Satellite -50711 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 91 chr16 34021348 34022490 + 0 NA Intergenic ALR/Alpha|Satellite|centr -59416 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 341 chrUn_gl000225 95888 97521 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 107 chr18 106508 111679 + 0 NA promoter-TSS (NR_033770) promoter-TSS (NR_033770) 28 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 - Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 87 chr16 33971979 33976254 + 0 NA Intergenic ALR/Alpha|Satellite|centr -11613 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 174 chr21 10773005 10773787 + 0 NA Intergenic Intergenic 217547 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 77 chr14 28599707 28600394 + 0 NA Intergenic Intergenic -497566 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 214 chr4 49149102 49153741 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 162762 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 221 chr4 52676796 52677386 + 0 NA Intergenic ALR/Alpha|Satellite|centr -32075 NM_001287757 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 39 chr10 42409031 42409562 + 0 NA Intergenic ALR/Alpha|Satellite|centr 454197 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 64 chr12 34840887 34842315 + 0 NA Intergenic ALR/Alpha|Satellite|centr 666385 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 97 chr16 46415195 46416068 + 0 NA Intergenic HSATII|Satellite|Satellite 187378 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 12 chr1 149033795 149035826 + 0 NA intron (NR_104217, intron 2 of 17).2 HSATII|Satellite|Satellite 74915 NR_104217 101929780 Hs.534675 NR_104217 ENSG00000272150 NBPF25P WI2-925H4.1 neuroblastoma breakpoint family member 25, pseudogene pseudo 41 chr10 42526976 42546687 + 0 NA Intergenic ALR/Alpha|Satellite|centr 326662 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 52 chr11 51575429 51575925 + 0 NA Intergenic ALR/Alpha|Satellite|centr 60395 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 312 chrUn_gl000216 13274 14167 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 302 chrUn_gl000212 43528 44323 + 0 NA intron (NR_027278, intron 1 of 7) HSATI|Satellite|Satellite 19876 NR_027278 26080 Hs.448583 NR_027278 ENSG00000279516 FAM230C LINC00281|NCRNA00281 family with sequence similarity 230 member C ncRNA 229 chr5 49417840 49419411 + 0 NA Intergenic ALR/Alpha|Satellite|centr 318609 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 45 chr11 30509987 30510768 + 0 NA intron (NM_001145399, intron 4 of 6) intron (NM_001145399, intron 4 of 6) 91663 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 260 chr7 79509371 79510406 + 0 NA Intergenic Intergenic -254252 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 237 chr6 61910829 61912058 + 0 NA Intergenic ALR/Alpha|Satellite|centr -372565 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 370 chrY 13125445 13126289 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1407522 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 309 chrUn_gl000216 9169 9838 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 188 chr22 18685492 18686136 + 0 NA intron (NR_136570, intron 1 of 11) HSATI|Satellite|Satellite 2816 NR_136570 100996415 Hs.645542 NR_136570 LOC100996415 - uncharacterized LOC100996415 ncRNA 68 chr12 34852132 34852999 + 0 NA Intergenic ALR/Alpha|Satellite|centr 677349 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 402 chrY 58993503 58994602 + 0 NA Intergenic BSR/Beta|Satellite|Satellite -106351 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 315 chrUn_gl000216 18777 19523 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 1 chr1 564386 565430 + 0 NA promoter-TSS (NR_125957) promoter-TSS (NR_125957) -519 NR_125957 101928626 Hs.637667 NR_125957 ENSG00000230021 LOC101928626 - uncharacterized LOC101928626 ncRNA 136 chr2 91600480 91601062 + 0 NA Intergenic HSATII|Satellite|Satellite 247204 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 116 chr2 89830418 89831078 + 0 NA Intergenic HSATII|Satellite|Satellite 718864 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 338 chrUn_gl000225 49151 51476 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 144 chr2 92284091 92284956 + 0 NA Intergenic ALR/Alpha|Satellite|centr 155364 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 380 chrY 13704081 13704656 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 829021 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 100 chr16 46454865 46455287 + 0 NA Intergenic HSATII|Satellite|Satellite 147933 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 300 chrUn_gl000212 40441 41308 + 0 NA intron (NR_027278, intron 1 of 7) HSATI|Satellite|Satellite 16825 NR_027278 26080 Hs.448583 NR_027278 ENSG00000279516 FAM230C LINC00281|NCRNA00281 family with sequence similarity 230 member C ncRNA 222 chr4 68264215 68266894 + 0 NA Intergenic ALR/Alpha|Satellite|centr 22164 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 25 chr10 39111691 39112479 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 122358 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 286 chr9 70009636 70010257 + 0 NA Intergenic ALR/Alpha|Satellite|centr 168869 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 120 chr2 89855255 89855994 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 743740 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 83 chr16 33887350 33887919 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 74869 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 381 chrY 13704703 13705590 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 828243 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 305 chrUn_gl000216 2951 3428 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 308 chrUn_gl000216 5749 9121 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 392 chrY 13868987 13870084 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 663854 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 254 chr7 61798175 61799260 + 0 NA Intergenic HSATII|Satellite|Satellite 965717 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 177 chr21 10806852 10807400 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 183817 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 373 chrY 13447555 13449992 + 0 NA Intergenic (CACTC)n|Simple_repeat|Simple_repeat 1084616 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 217 chr4 49638445 49640656 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 650891 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 328 chrUn_gl000216 153864 156139 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 239 chr6 61913698 61914641 + 0 NA Intergenic ALR/Alpha|Satellite|centr -369839 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 122 chr2 89864914 89866075 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 753610 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 143 chr2 92282515 92283023 + 0 NA Intergenic ALR/Alpha|Satellite|centr 153610 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 281 chr9 69703297 69703987 + 0 NA intron (NR_135597, intron 4 of 4).2 ALR/Alpha|Satellite|centr 51490 NR_136299 101929583 Hs.404758 NR_136299 LOC101929583 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene pseudo 269 chr8 46838886 46857190 + 0 NA Intergenic ALR/Alpha|Satellite|centr -904470 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 205 chr4 49127860 49129753 + 0 NA Intergenic Intergenic 140147 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 158 chr20 29831882 29832451 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -13301 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 42 chr10 42596652 42601012 + 0 NA Intergenic HSATII|Satellite|Satellite 264661 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 22 chr10 39094095 39094467 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 104554 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 363 chrX 61870555 61870976 + 0 NA Intergenic ALR/Alpha|Satellite|centr 700453 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 46 chr11 48953115 48953789 + 0 NA Intergenic ALR/Alpha|Satellite|centr -99700 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 399 chrY 58982017 58983379 + 0 NA Intergenic (CATTC)n|Satellite|Satellite -117705 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 235 chr6 58773556 58780193 + 0 NA Intergenic ALR/Alpha|Satellite|centr -489150 NR_132996 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 301 chrUn_gl000212 41745 42555 + 0 NA intron (NR_027278, intron 1 of 7) HSATI|Satellite|Satellite 18101 NR_027278 26080 Hs.448583 NR_027278 ENSG00000279516 FAM230C LINC00281|NCRNA00281 family with sequence similarity 230 member C ncRNA 6 chr1 121364930 121366312 + 0 NA Intergenic ALR/Alpha|Satellite|centr 104711 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 36 chr10 42401617 42402649 + 0 NA Intergenic ALR/Alpha|Satellite|centr 461360 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 213 chr4 49144681 49148836 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 158099 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 183 chr21 11185960 11187064 + 0 NA Intergenic HSATI|Satellite|Satellite -87575 NM_001187 574 Hs.545789 NM_001187 BAGE BAGE1|CT2.1 B melanoma antigen protein-coding 94 chr16 35239374 35239966 + 0 NA Intergenic ALR/Alpha|Satellite|centr 258747 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 FLJ26245 - uncharacterized LOC400533 ncRNA 51 chr11 51574007 51574877 + 0 NA Intergenic ALR/Alpha|Satellite|centr 59160 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 362 chrX 61841829 61842270 + 0 NA Intergenic ALR/Alpha|Satellite|centr 729169 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 317 chrUn_gl000216 21113 22676 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 296 chr9_gl000199_random 127416 128628 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 265 chr8 43095765 43096297 + 0 NA Intergenic SAR|Satellite|Satellite -51554 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 169 chr21 10734715 10736098 + 0 NA Intergenic ALR/Alpha|Satellite|centr 255537 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 132 chr2 90385055 90390675 + 0 NA Intergenic HSATII|Satellite|Satellite 1275981 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 171 chr21 10750283 10752781 + 0 NA Intergenic ALR/Alpha|Satellite|centr 239411 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 398 chrY 58977747 58982002 + 0 NA Intergenic (CATTC)n|Simple_repeat|Simple_repeat -120529 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 384 chrY 13808451 13809048 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 724640 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 386 chrY 13838032 13838598 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 695074 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 200 chr4 1421703 1422973 + 0 NA Intergenic Intergenic -22108 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 18 chr10 38871854 38872364 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -117618 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 376 chrY 13457316 13459763 + 0 NA Intergenic Intergenic 1074850 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 366 chrY 10086658 10087525 + 0 NA Intergenic ALR/Alpha|Satellite|centr 338684 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 125 chr2 89872569 89873168 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 760984 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 329 chrUn_gl000216 159711 161881 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 44 chr10 42817520 42818320 + 0 NA Intergenic ALR/Alpha|Satellite|centr 45573 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 27 chr10 39128554 39129136 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 139118 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 272 chr9 66819714 66820539 + 0 NA Intergenic ALR/Alpha|Satellite|centr -102841 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 161 chr21 10698038 10703715 + 0 NA Intergenic ALR/Alpha|Satellite|centr 290067 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 190 chr22 18877998 18878733 + 0 NA intron (NR_136571, intron 1 of 11) HSATI|Satellite|Satellite 3579 NR_136571 100996432 Hs.631668 NR_136571 LINC01663 - long intergenic non-protein coding RNA 1663 ncRNA 298 chr9_gl000199_random 132260 132930 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 95 chr16 46385803 46414747 + 0 NA Intergenic Intergenic 202734 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 400 chrY 58984920 58985875 + 0 NA Intergenic BSR/Beta|Satellite|Satellite -115006 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 313 chrUn_gl000216 14772 15783 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 20 chr10 39078848 39079691 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 89542 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 109 chr18 31382727 31383528 + 0 NA Intergenic Intergenic 224586 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 231 chr5 49422165 49425184 + 0 NA Intergenic ALR/Alpha|Satellite|centr 313560 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 243 chr7 57553921 57554822 + 0 NA Intergenic HSATII|Satellite|Satellite 44488 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 151 chr2 132997153 132997688 + 0 NA intron (NR_027020, intron 1 of 4) ALR/Alpha|Satellite|centr 17233 NR_031608 100313824 NR_031608 ENSG00000221288 MIR663B MIRN663B|mir-663b microRNA 663b ncRNA 148 chr2 92305135 92326222 + 0 NA Intergenic ALR/Alpha|Satellite|centr 186519 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 343 chrUn_gl000225 100385 103303 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 287 chr9 70327189 70327590 + 0 NA Intergenic ALR/Alpha|Satellite|centr 47535 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 78 chr14 36536659 36537525 + 0 NA Intergenic Intergenic -2541 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 397 chrY 58976077 58977587 + 0 NA Intergenic (CACTC)n|Simple_repeat|Simple_repeat -123571 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 294 chr9_gl000199_random 36551 39169 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 349 chrUn_gl000228 115664 119812 + 0 NA intron (NR_137167, intron 2 of 5) BSR/Beta|Satellite|Satellite 5133 NM_001306068 100288687 Hs.728749 NM_001205218 ENSG00000260596 DUX4 DUX4L double homeobox 4 protein-coding 106 chr17 25267693 25268068 + 0 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat 148387 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 275 chr9 66843558 66844203 + 0 NA Intergenic ALR/Alpha|Satellite|centr -79087 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 157 chr20 29829272 29830049 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -15807 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 65 chr12 34846140 34847300 + 0 NA Intergenic ALR/Alpha|Satellite|centr 671504 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 197 chr22 21680444 21680880 + 0 NA intron (NR_136559, intron 1 of 11) HSATI|Satellite|Satellite 263 NR_136559 100996335 Hs.645542 NR_136559 ENSG00000206142 LOC100996335 - uncharacterized LOC100996335 ncRNA 203 chr4 49118273 49119121 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 130038 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 261 chr7 125416095 125416756 + 0 NA Intergenic Intergenic -512080 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 138 chr2 91604201 91606335 + 0 NA Intergenic HSATII|Satellite|Satellite 242707 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 81 chr16 33865960 33866962 + 0 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat 96042 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 137 chr2 91602533 91603806 + 0 NA Intergenic HSATII|Satellite|Satellite 244806 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 60 chr11 55007030 55007689 + 0 NA Intergenic ALR/Alpha|Satellite|centr -22299 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 321 chrUn_gl000216 77523 78598 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 284 chr9 69990396 69990791 + 0 NA Intergenic ALR/Alpha|Satellite|centr 188222 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 86 chr16 33970848 33971814 + 0 NA Intergenic ALR/Alpha|Satellite|centr -8828 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 247 chr7 61084914 61085513 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1679221 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 371 chrY 13129636 13130850 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1403146 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 204 chr4 49119151 49127553 + 0 NA Intergenic Intergenic 134693 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 289 chr9 140222141 140222992 + 0 NA intron (NM_017820, intron 17 of 21) intron (NM_017820, intron 17 of 21) -25863 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 165 chr21 10713592 10719655 + 0 NA Intergenic ALR/Alpha|Satellite|centr 274320 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 346 chrUn_gl000225 126766 128785 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 17 chr10 38816748 38818789 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 100694 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 2 chr1 567057 568364 + 0 NA promoter-TSS (NR_106781) promoter-TSS (NR_106781) 83 NR_106781 102465432 NR_106781 ENSG00000278791 MIR6723 hsa-mir-6723 microRNA 6723 ncRNA 401 chrY 58991064 58991934 + 0 NA Intergenic BSR/Beta|Satellite|Satellite -108904 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 186 chr22 16850006 16850812 + 0 NA Intergenic HSATII|Satellite|Satellite 223291 NM_014406 150160 Hs.128342 NM_014406 ENSG00000198445 CCT8L2 CESK1 chaperonin containing TCP1 subunit 8 like 2 protein-coding 82 chr16 33873978 33874182 + 0 NA Intergenic (GAATG)n|Simple_repeat|Simple_repeat 88423 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 110 chr19 24619512 24620614 + 0 NA Intergenic ALR/Alpha|Satellite|centr -273814 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 147 chr2 92300110 92301473 + 0 NA Intergenic ALR/Alpha|Satellite|centr 171632 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 333 chrUn_gl000225 4995 7215 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 339 chrUn_gl000225 66121 68525 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 228 chr5 49415486 49417676 + 0 NA Intergenic ALR/Alpha|Satellite|centr 320653 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 323 chrUn_gl000216 134605 135518 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 268 chr8 43820832 43838898 + 0 NA Intergenic ALR/Alpha|Satellite|centr 682280 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 345 chrUn_gl000225 123925 126494 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 69 chr12 34853513 34853987 + 0 NA Intergenic ALR/Alpha|Satellite|centr 678534 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 112 chr19 27906112 27906586 + 0 NA Intergenic ALR/Alpha|Satellite|centr -378026 NR_110688 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 319 chrUn_gl000216 58492 59161 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 172 chr21 10760313 10761509 + 0 NA Intergenic ALR/Alpha|Satellite|centr 230032 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 191 chr22 18879888 18880558 + 0 NA intron (NR_136571, intron 1 of 11) HSATI|Satellite|Satellite 1721 NR_136571 100996432 Hs.631668 NR_136571 LINC01663 - long intergenic non-protein coding RNA 1663 ncRNA 224 chr5 46333705 46334476 + 0 NA Intergenic ALR/Alpha|Satellite|centr -637870 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 187 chr22 16851631 16852440 + 0 NA Intergenic HSATII|Satellite|Satellite 221665 NM_014406 150160 Hs.128342 NM_014406 ENSG00000198445 CCT8L2 CESK1 chaperonin containing TCP1 subunit 8 like 2 protein-coding 223 chr5 34245990 34246618 + 0 NA Intergenic Intergenic -121671 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 282 chr9 69710595 69711401 + 0 NA intron (NR_135597, intron 4 of 4).2 ALR/Alpha|Satellite|centr 46786 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 262 chr7 126417883 126418401 + 0 NA intron (NM_001127323, intron 6 of 10) intron (NM_001127323, intron 6 of 10) 280096 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 79 chr15 20005336 20006056 + 0 NA Intergenic ALR/Alpha|Satellite|centr -482301 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 121 chr2 89861138 89861570 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 749470 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 212 chr4 49143363 49144676 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 155360 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 352 chrX 58561160 58561782 + 0 NA Intergenic ALR/Alpha|Satellite|centr -624404 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 344 chrUn_gl000225 106945 108916 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 126 chr2 89874055 89880216 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 765251 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 238 chr6 61913279 61913619 + 0 NA Intergenic ALR/Alpha|Satellite|centr -370559 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2-like 9 protein-coding 251 chr7 61787147 61788001 + 0 NA Intergenic HSATII|Satellite|Satellite 976860 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 369 chrY 13109503 13110331 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1423472 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 253 chr7 61794161 61795455 + 0 NA Intergenic HSATII|Satellite|Satellite 969626 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 279 chr9 68419281 68422337 + 0 NA Intergenic Intergenic -5421 NR_039688 100616184 NR_039688 ENSG00000276029 MIR4477A - microRNA 4477a ncRNA 176 chr21 10804744 10805690 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 185726 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 209 chr4 49137687 49139693 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 150031 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 357 chrX 61693772 61703303 + 0 NA Intergenic ALR/Alpha|Satellite|centr 872681 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 216 chr4 49633319 49638216 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 647108 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 256 chr7 61980097 61981168 + 0 NA Intergenic ALR/Alpha|Satellite|centr 783802 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 372 chrY 13140955 13141435 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 1392194 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 117 chr2 89848499 89849956 + 0 NA Intergenic HSATII|Satellite|Satellite 737343 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 170 chr21 10743256 10744461 + 0 NA Intergenic ALR/Alpha|Satellite|centr 247085 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 33 chr10 42367235 42372076 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 493838 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 63 chr12 34835219 34835802 + 0 NA Intergenic ALR/Alpha|Satellite|centr 660294 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 7 chr1 121458590 121459400 + 0 NA Intergenic ALR/Alpha|Satellite|centr 198085 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 80 chr15 68132284 68132874 + 0 NA promoter-TSS (NR_125730).5 promoter-TSS (NR_125730).5 -196 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 26 chr10 39121335 39121723 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 131802 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 227 chr5 49413225 49415012 + 0 NA Intergenic ALR/Alpha|Satellite|centr 323116 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 336 chrUn_gl000225 20420 22327 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 99 chr16 46438652 46439410 + 0 NA Intergenic HSATII|Satellite|Satellite 163978 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 72 chr12 38036603 38037184 + 0 NA Intergenic ALR/Alpha|Satellite|centr -673664 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 179 chr21 10838944 10839275 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 151834 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 383 chrY 13800997 13801359 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 732211 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 264 chr8 43094531 43095444 + 0 NA Intergenic SAR|Satellite|Satellite -52598 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 255 chr7 61973435 61977321 + 0 NA Intergenic ALR/Alpha|Satellite|centr 789056 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 297 chr9_gl000199_random 128932 132150 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 359 chrX 61729074 61731570 + 0 NA Intergenic ALR/Alpha|Satellite|centr 840896 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 182 chr21 10856511 10857205 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 134085 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 108 chr18 18510864 18520574 + 0 NA Intergenic ALR/Alpha|Satellite|centr 176093 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 277 chr9 66973009 66973724 + 0 NA intron (NR_135597, intron 4 of 4).3 ALR/Alpha|Satellite|centr 50399 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 92 chr16 34022502 34022956 + 0 NA Intergenic ALR/Alpha|Satellite|centr -60226 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 232 chr5 49426563 49427772 + 0 NA Intergenic ALR/Alpha|Satellite|centr 310067 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 10 chr1 142539868 142541274 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 173034 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 225 chr5 49409117 49410600 + 0 NA Intergenic ALR/Alpha|Satellite|centr 327376 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 330 chrUn_gl000216 161953 162912 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 142 chr2 92280287 92281835 + 0 NA Intergenic ALR/Alpha|Satellite|centr 151902 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 207 chr4 49133559 49136374 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 146307 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 263 chr8 43092726 43094046 + 0 NA Intergenic SAR|Satellite|Satellite -54199 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 394 chrY 28815068 28818092 + 0 NA Intergenic (GAATG)n|Simple_repeat|Simple_repeat 941943 NR_002176 474148 Hs.511777 NR_002176 ENSG00000280961 TTTY3B LNCRNA00122|NCRNA00122 testis-specific transcript, Y-linked 3B (non-protein coding) ncRNA 167 chr21 10722563 10724500 + 0 NA Intergenic ALR/Alpha|Satellite|centr 267412 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 48 chr11 51567082 51568276 + 0 NA Intergenic ALR/Alpha|Satellite|centr 52397 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 360 chrX 61732220 61734739 + 0 NA Intergenic ALR/Alpha|Satellite|centr 837739 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 133 chr2 90390770 90393553 + 0 NA Intergenic HSATII|Satellite|Satellite 1280277 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 290 chr9_gl000199_random 29725 30417 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 123 chr2 89866636 89869007 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 755937 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 149 chr2 109815756 109816429 + 0 NA intron (NM_001099289, intron 1 of 9) (GAATG)n|Satellite|Satellite -58048 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 304 chrUn_gl000216 1177 2865 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 50 chr11 51571892 51573977 + 0 NA Intergenic ALR/Alpha|Satellite|centr 57652 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 210 chr4 49139806 49142235 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 152361 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 396 chrY 58974556 58975523 + 0 NA Intergenic (CATTC)n|Satellite|Satellite -125364 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 258 chr7 61985980 61986852 + 0 NA Intergenic ALR/Alpha|Satellite|centr 778018 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 173 chr21 10761937 10764504 + 0 NA Intergenic ALR/Alpha|Satellite|centr 227723 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 393 chrY 28784136 28784539 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 909700 NR_002176 474148 Hs.511777 NR_002176 ENSG00000280961 TTTY3B LNCRNA00122|NCRNA00122 testis-specific transcript, Y-linked 3B (non-protein coding) ncRNA 56 chr11 51585911 51587409 + 0 NA Intergenic ALR/Alpha|Satellite|centr 71378 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 66 chr12 34848556 34849023 + 0 NA Intergenic ALR/Alpha|Satellite|centr 673573 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 19 chr10 38880138 38882301 + 0 NA Intergenic HSATII|Satellite|Satellite -108508 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 293 chr9_gl000199_random 35277 36216 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 54 chr11 51580009 51581171 + 0 NA Intergenic ALR/Alpha|Satellite|centr 65308 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 365 chrY 10085899 10086646 + 0 NA Intergenic ALR/Alpha|Satellite|centr 337865 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 274 chr9 66832984 66836058 + 0 NA Intergenic ALR/Alpha|Satellite|centr -88446 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 306 chrUn_gl000216 4074 4795 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 70 chr12 38008355 38008869 + 0 NA Intergenic ALR/Alpha|Satellite|centr -701945 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 322 chrUn_gl000216 80572 81344 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 353 chrX 58561895 58563042 + 0 NA Intergenic ALR/Alpha|Satellite|centr -625401 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 166 chr21 10719764 10722430 + 0 NA Intergenic ALR/Alpha|Satellite|centr 269846 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 375 chrY 13454166 13456845 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 1077884 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 88 chr16 33976283 33977154 + 0 NA Intergenic ALR/Alpha|Satellite|centr -14215 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 30 chr10 39143861 39144466 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 154436 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 141 chr2 92268105 92270264 + 0 NA Intergenic HSATII|Satellite|Satellite 140025 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 403 chrY 58996417 58997788 + 0 NA Intergenic BSR/Beta|Satellite|Satellite -103301 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 128 chr2 90375038 90377489 + 0 NA Intergenic HSATII|Satellite|Satellite 1264379 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 252 chr7 61791518 61792373 + 0 NA Intergenic HSATII|Satellite|Satellite 972489 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 28 chr10 39129646 39129981 + 0 NA Intergenic Intergenic 140086 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 310 chrUn_gl000216 9892 10859 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 283 chr9 69963354 69963867 + 0 NA Intergenic ALR/Alpha|Satellite|centr -205826 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 75 chr13 94322069 94322779 + 0 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 188302 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 40 chr10 42418292 42418892 + 0 NA Intergenic ALR/Alpha|Satellite|centr 444901 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 134 chr2 91595111 91599017 + 0 NA Intergenic HSATII|Satellite|Satellite 250911 NR_027238 654342 Hs.469287 NR_027238 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 156 chr20 29822728 29823113 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -22547 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 303 chrUn_gl000214 63955 65769 + 0 NA NA Intergenic NA NA 192 chr22 18881359 18881875 + 0 NA intron (NR_136571, intron 1 of 11) AluSc8|SINE|Alu 327 NR_136571 100996432 Hs.631668 NR_136571 LINC01663 - long intergenic non-protein coding RNA 1663 ncRNA 250 chr7 61783106 61784306 + 0 NA Intergenic HSATII|Satellite|Satellite 980728 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 59 chr11 51592127 51593712 + 0 NA Intergenic ALR/Alpha|Satellite|centr 77637 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 215 chr4 49153766 49158732 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 167590 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 278 chr9 67320184 67320983 + 0 NA intron (NR_136300, intron 3 of 3) ALR/Alpha|Satellite|centr 30132 NR_136300 102724580 Hs.494013 NR_136300 LOC102724580 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene pseudo 150 chr2 132996142 132996982 + 0 NA intron (NR_027020, intron 1 of 4) ALR/Alpha|Satellite|centr 18091 NR_031608 100313824 NR_031608 ENSG00000221288 MIR663B MIRN663B|mir-663b microRNA 663b ncRNA 271 chr9 66810881 66811138 + 0 NA Intergenic ALR/Alpha|Satellite|centr -111958 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 130 chr2 90379023 90382635 + 0 NA Intergenic HSATII|Satellite|Satellite 1268945 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 155 chr20 29811819 29812319 + 0 NA Intergenic (GAATG)n|Satellite|Satellite -33398 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 387 chrY 13842528 13842883 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 690684 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 53 chr11 51578996 51579876 + 0 NA Intergenic ALR/Alpha|Satellite|centr 64154 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 245 chr7 61078967 61080690 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1684606 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 267 chr8 43792993 43795059 + 0 NA Intergenic ALR/Alpha|Satellite|centr 646441 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 354 chrX 58563387 58582005 + 0 NA Intergenic ALR/Alpha|Satellite|centr -635629 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 219 chr4 49646324 49651536 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 660271 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 318 chrUn_gl000216 22759 23808 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 13 chr1 224200455 224201730 + 0 NA intron (NR_136593, intron 2 of 4) (GAATG)n|Satellite|Satellite 20660 NR_136593 100287497 Hs.568390 NR_136590 LOC100287497 - septin 7 pseudogene pseudo 257 chr7 61983427 61983861 + 0 NA Intergenic ALR/Alpha|Satellite|centr 780790 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 105 chr17 25265743 25267667 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 149562 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 85 chr16 33918944 33919910 + 0 NA Intergenic ALR/Alpha|Satellite|centr 43076 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 3 chr1 87221574 87222121 + 0 NA Intergenic Intergenic 51594 NM_001206653 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like endophilin B1 protein-coding 185 chr21 14366853 14368290 + 0 NA Intergenic ALR/Alpha|Satellite|centr -42916 NR_026916 149992 Hs.558645 NM_153773 ANKRD30BP2 C21orf99|CT85|CTSP-1|CTSP1 ankyrin repeat domain 30B pseudogene 2 pseudo 390 chrY 13864441 13864696 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 668821 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 332 chrUn_gl000216 169128 170227 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 248 chr7 61742242 61743756 + 0 NA Intergenic HSATII|Satellite|Satellite 1021435 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 111 chr19 27812677 27813150 + 0 NA Intergenic ALR/Alpha|Satellite|centr -471462 NR_110688 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 9 chr1 142535547 142539690 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 175987 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 146 chr2 92294565 92298497 + 0 NA Intergenic ALR/Alpha|Satellite|centr 167372 NR_027714 440888 Hs.730239 NM_001032412 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 356 chrX 61690598 61693746 + 0 NA Intergenic ALR/Alpha|Satellite|centr 879046 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 38 chr10 42407780 42408659 + 0 NA Intergenic ALR/Alpha|Satellite|centr 455274 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 4 chr1 121351632 121360617 + 0 NA Intergenic ALR/Alpha|Satellite|centr 95214 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 34 chr10 42372171 42373696 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 490560 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 164 chr21 10710644 10713577 + 0 NA Intergenic ALR/Alpha|Satellite|centr 278833 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 196 chr22 21679383 21680106 + 0 NA intron (NR_136559, intron 1 of 11) AluSc8|SINE|Alu 1181 NR_136559 100996335 Hs.645542 NR_136559 ENSG00000206142 LOC100996335 - uncharacterized LOC100996335 ncRNA 242 chr7 24043 24481 + 0 NA Intergenic L1MD3|LINE|L1 125176 NR_134325 102723672 Hs.605204 NR_134325 LOC102723672 - uncharacterized LOC102723672 ncRNA