PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_AD9.GO0003677.bed hg19 -size given -wig ./Calu3_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H1755_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H1819_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2009_K27Ac_S2_MACS14_bam_model_swig_treat_afterfiting_all.scaled.wig ./H2009_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2030_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2291_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H2347_S3_model_swig_treat_afterfiting_all.scaled.wig ./H3122_K27Ac_bt2_model_p5_swig_treat_afterfiting_all.scaled.wig ./H3122_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H3255_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H358_S4_model_p5_swig_treat_afterfiting_all.scaled.wig ./HCC1171_S1_model_swig_treat_afterfiting_all.scaled.wig ./HCC78_S5_model_swig_treat_afterfiting_all.scaled.wig ./PC9_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./h1373_ab4729_chip_1124_S9_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h1650_ab4729_chip_0525_0714_15c_S23_p5_swig_treat_afterfiting_all.scaled.wig ./h1792_ab4729_chip_0113_S13_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h1833_ab4729_chip_0610_0714_15c_S25_p5_swig_treat_afterfiting_all.scaled.wig ./h2077_2_ab4729_chip_0525_0714_15c_S21_p5_swig_treat_afterfiting_all.scaled.wig ./h2228_ab4729_chip_0113_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h2228_ab4729_chip_0221_S31_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h2286_ab4729_chip_1124_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h460_ab4729_chip_0221_S15_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc366_ab4729_chip_0221_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc44_ab4729_chip_0221_S29_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc44_ab4729_chip_1202_S5_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc827_ab4729_chip_0221_S27_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./sklu1_ab4729_chip_0221_S17_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_a549__1_k27ac_hg_S31-p5-swig_treat_afterfiting_all.scaled.wig ./st_hw_h1299__1_k27ac_hg_S29-p5-swig_treat_afterfiting_all.scaled.wig ./st_hw_h1395_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h1437_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2009_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2087_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2122_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2126_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h23__1_k27ac_hg_S30-p5-swig_treat_afterfiting_all.scaled.wig ./ts_hw_h1975_ab4729_chip_0331_12c_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_hcc461_ab4729_chip_0331_12c_S2_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_sw1573_ab4729_chip_0331_12c_S4_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_sw1573_ab4729_chip_0414_13c_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type ./Calu3_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1755_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1819_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2009_K27Ac_S2_MACS14_bam_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2009_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2030_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2291_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2347_S3_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H3122_K27Ac_bt2_model_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H3122_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H3255_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H358_S4_model_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC1171_S1_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC78_S5_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./PC9_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1373_ab4729_chip_1124_S9_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1650_ab4729_chip_0525_0714_15c_S23_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1792_ab4729_chip_0113_S13_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1833_ab4729_chip_0610_0714_15c_S25_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2077_2_ab4729_chip_0525_0714_15c_S21_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2228_ab4729_chip_0113_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2228_ab4729_chip_0221_S31_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2286_ab4729_chip_1124_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h460_ab4729_chip_0221_S15_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc366_ab4729_chip_0221_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc44_ab4729_chip_0221_S29_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc44_ab4729_chip_1202_S5_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc827_ab4729_chip_0221_S27_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./sklu1_ab4729_chip_0221_S17_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_a549__1_k27ac_hg_S31-p5-swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1299__1_k27ac_hg_S29-p5-swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1395_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1437_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2009_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2087_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2122_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2126_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h23__1_k27ac_hg_S30-p5-swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h1975_ab4729_chip_0331_12c_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_hcc461_ab4729_chip_0331_12c_S2_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_sw1573_ab4729_chip_0331_12c_S4_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_sw1573_ab4729_chip_0414_13c_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp 361 chr11 73017727 73021492 + 0 NA promoter-TSS (NM_014786) promoter-TSS (NM_014786) -54 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding 4.171 7.900 3.856 1.344 4.499 4.887 4.244 2.122 5.070 5.561 5.613 2.323 2.533 4.735 5.094 3.664 2.646 2.283 0.026 0.517 3.284 4.833 5.834 1.874 16.368 5.467 2.029 2.663 6.666 5.119 7.482 1.352 4.521 9.260 6.705 2.277 4.705 14.266 3.687 4.478 3.627 2.697 1545 chr5 50673663 50686911 + 0 NA intron (NM_002202, intron 1 of 5) intron (NM_002202, intron 1 of 5) -1121 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 2.846 0.126 1.007 0.300 0.599 0.656 0.051 0.128 1.281 0.596 0.432 0.199 0.909 2.738 0.108 0.225 0.160 0.035 0.700 0.021 3.189 3.017 0.094 0.050 0.333 0.055 0.071 0.035 1.018 0.080 0.472 0.910 0.030 0.395 0.042 0.025 0.044 0.619 0.046 0.677 0.087 0.042 1642 chr6 27438975 27453112 + 0 NA Intergenic Intergenic -5146 NM_001347832 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 1.169 1.178 0.635 0.467 1.860 2.209 1.140 0.396 1.913 0.994 1.383 0.693 0.427 0.531 1.493 0.992 0.381 0.859 0.424 0.984 0.994 0.832 0.297 0.868 1.975 0.930 0.521 0.629 0.902 1.170 3.503 1.307 0.751 2.623 2.268 0.392 0.565 2.219 0.905 0.599 0.656 0.514 1265 chr20 50521578 50529748 + 0 NA Intergenic AluSq2|SINE|Alu -46211 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 0.834 0.093 5.841 0.256 0.807 0.070 0.201 0.194 2.756 1.419 3.188 0.338 0.101 0.199 1.304 0.097 1.397 0.303 0.097 4.850 0.702 0.269 1.243 0.193 0.164 0.088 0.123 0.319 0.171 1.067 0.035 0.029 0.258 0.600 0.033 0.752 0.327 2.050 0.139 0.043 0.183 0.062 1194 chr2 232161518 232175156 + 0 NA intron (NM_001271466, intron 18 of 24) L1M4|LINE|L1 -59082 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 0.089 0.144 0.242 0.320 0.689 0.056 0.903 0.333 6.942 2.153 3.228 1.951 0.068 1.842 0.336 1.226 0.043 0.095 0.028 0.031 0.658 0.403 0.043 0.109 0.101 0.027 0.053 0.903 0.111 0.343 0.109 0.279 1.233 1.115 1.441 0.147 1.553 0.112 0.613 0.090 0.025 0.015 329 chr11 64602025 64647670 + 0 NA intron (NM_006795, intron 3 of 4) AluSx1|SINE|Alu -12806 NM_017525 55561 Hs.293590 NM_017525 ENSG00000171219 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma protein-coding 2.348 1.660 1.403 1.158 2.362 2.165 1.896 1.565 4.557 2.288 2.193 1.900 1.385 1.448 1.751 2.801 1.241 0.969 0.528 0.294 1.982 1.899 1.042 0.893 2.516 3.745 1.722 1.302 3.652 2.314 2.342 0.301 0.951 2.642 1.950 1.022 1.165 1.286 1.406 1.887 0.679 0.424 1862 chr8 71574697 71583418 + 0 NA intron (NM_016027, intron 1 of 6) L2b|LINE|L2 2390 NM_016027 51110 Hs.118554 NM_016027 ENSG00000147592 LACTB2 CGI-83 lactamase beta 2 protein-coding 0.813 0.930 2.388 0.636 2.680 0.975 5.434 1.397 2.372 1.441 5.542 0.721 0.271 3.202 0.574 0.848 0.493 0.673 0.452 0.508 2.909 2.871 0.567 0.417 0.746 1.036 0.712 1.983 1.290 1.585 2.689 0.950 1.312 2.096 0.841 0.629 0.303 0.434 1.080 0.349 0.866 0.590 592 chr14 68735225 68780231 + 0 NA intron (NM_001321809, intron 7 of 11) AluSq2|SINE|Alu 337776 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.647 0.217 1.763 0.105 0.078 0.111 0.159 0.101 3.105 0.869 1.655 0.272 0.321 0.119 1.416 0.205 0.132 0.495 0.118 0.071 0.785 0.232 0.044 0.392 0.081 0.048 0.040 0.123 0.219 0.357 0.194 0.161 0.365 0.059 0.181 0.130 0.660 0.142 0.268 0.342 0.042 0.074 1729 chr7 5587477 5611068 + 0 NA Intergenic MIR3|SINE|MIR -29040 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 3.383 3.396 1.486 0.698 1.147 3.887 2.474 0.989 nan 1.618 1.768 0.998 0.943 1.288 2.111 1.383 1.093 2.255 0.182 1.556 2.131 2.249 1.742 3.486 3.907 2.109 1.041 0.848 1.923 3.689 3.508 0.850 2.185 2.197 2.355 2.045 1.682 4.863 1.430 1.926 0.724 0.402 34 chr1 27111773 27117058 + 0 NA promoter-TSS (NM_017837) promoter-TSS (NM_017837) -39 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 4.714 5.511 5.416 1.783 3.464 7.275 5.676 2.565 9.995 7.067 5.062 3.125 2.612 2.565 3.346 4.445 3.078 3.997 3.104 4.822 2.865 3.841 3.560 5.541 6.972 5.405 1.826 2.523 6.793 3.681 6.267 1.705 2.247 3.740 8.972 1.861 2.817 7.690 3.496 4.131 4.490 3.009 1803 chr7 101456255 101468179 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 1335 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 0.810 1.603 5.468 1.149 3.344 3.590 3.628 0.566 3.092 1.692 3.447 0.557 0.714 2.227 0.879 2.587 0.504 1.780 0.561 0.921 0.991 1.056 1.473 2.278 2.273 1.244 0.726 2.343 1.190 6.174 4.368 1.931 2.328 2.748 1.609 2.009 3.386 4.083 1.972 0.419 0.512 0.410 331 chr11 64972239 65002028 + 0 NA intron (NM_001004326, intron 3 of 5) L2a|LINE|L2 5822 NR_033396 440044 Hs.532372 NM_001004326 ENSG00000197847 SLC22A20 Oat6 solute carrier family 22 member 20 protein-coding 0.116 0.217 0.019 0.246 0.540 0.076 0.748 0.362 5.958 2.417 0.884 0.373 0.060 0.444 1.548 0.821 0.042 0.103 0.048 0.088 0.148 0.116 0.129 0.111 0.171 0.089 0.074 0.147 0.266 0.213 0.213 0.053 0.158 0.398 0.106 0.140 0.060 0.288 0.158 0.074 0.041 0.017 813 chr17 27451263 27491502 + 0 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -3985 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 2.210 2.545 0.069 1.482 2.137 0.206 0.730 0.679 2.962 1.014 0.874 0.741 0.557 0.964 1.790 2.261 0.593 0.696 0.140 0.093 2.126 1.911 0.556 0.660 2.149 0.706 0.452 0.384 0.948 2.535 0.437 1.260 1.077 1.452 0.806 0.695 0.535 0.499 2.723 0.631 0.261 0.184 465 chr12 58816900 58822087 + 0 NA Intergenic Intergenic -165991 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 4.849 1.253 0.443 1.900 2.879 0.968 3.261 4.320 6.303 4.632 3.609 4.988 4.229 2.709 1.618 2.862 0.479 3.188 0.154 0.034 4.595 3.957 0.100 3.774 0.231 0.536 0.392 3.812 6.582 1.983 0.138 2.802 4.336 3.056 26.458 2.830 2.465 0.091 3.558 3.183 2.664 3.502 45 chr1 33803152 33817593 + 0 NA intron (NM_001330488, intron 7 of 12) AluJb|SINE|Alu 5127 NM_004427 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 2.914 4.865 0.179 0.961 2.586 3.575 3.378 1.357 5.917 3.775 4.344 2.097 2.051 2.306 1.949 4.939 0.858 3.190 3.580 0.489 2.001 2.117 1.073 0.852 5.822 2.793 1.123 1.030 6.335 1.798 4.632 2.893 1.742 1.998 7.113 0.916 0.746 2.604 1.353 3.239 3.701 4.350 352 chr11 67182382 67197347 + 0 NA intron (NM_020811, intron 8 of 8) AluSz|SINE|Alu -6071 NM_003952 6199 Hs.534345 NM_003952 ENSG00000175634 RPS6KB2 KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|SRK|STK14B|p70(S6K)-beta|p70S6Kb ribosomal protein S6 kinase B2 protein-coding 0.933 1.196 0.186 0.491 0.867 0.606 0.697 0.369 2.637 1.302 1.314 0.508 0.260 0.823 1.081 1.021 0.373 2.507 0.535 0.195 0.708 0.526 0.668 0.746 1.232 0.601 0.412 0.437 0.628 1.578 1.357 2.049 1.302 1.336 1.379 0.644 0.943 5.513 1.318 0.479 0.162 0.058 1106 chr2 16104165 16118781 + 0 NA Intergenic Intergenic -29102 NM_001329968 10408 Hs.651453 NM_006316 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand protein-coding 5.343 0.037 0.017 0.039 0.036 0.026 0.051 0.901 0.155 0.204 0.010 0.024 0.029 0.066 0.049 0.059 0.044 0.095 0.038 0.034 0.040 0.084 0.143 0.037 0.027 0.037 0.111 0.117 0.043 0.022 0.085 0.039 0.043 0.073 0.101 0.087 0.022 0.046 0.024 0.014 389 chr11 129235316 129251022 + 0 NA Intergenic CpG -2712 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 2.037 0.070 5.023 0.277 0.466 0.040 0.174 0.759 1.370 0.478 0.809 0.694 0.496 0.243 0.963 0.941 0.825 0.070 0.019 0.009 0.093 0.023 0.200 0.021 0.271 0.276 0.159 0.118 0.303 0.093 0.933 0.889 1.292 0.617 0.213 0.312 1.139 0.592 0.518 0.039 0.055 0.026 78 chr1 68213190 68217683 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 64576 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 4.218 3.219 4.462 2.478 4.338 3.280 4.144 3.179 7.123 2.397 4.614 3.417 1.438 4.452 5.566 5.292 3.416 4.258 0.333 0.062 2.932 3.071 2.242 1.923 2.663 0.471 0.295 9.570 6.958 2.347 0.695 3.670 2.676 6.000 0.642 2.207 5.197 0.696 2.036 2.099 0.346 0.238 1641 chr6 26532151 26540946 + 0 NA Intergenic Intergenic -2024 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 1.959 3.219 1.169 0.670 2.121 5.554 1.283 0.768 2.077 1.900 1.652 0.949 0.789 0.793 1.602 1.397 0.458 2.194 1.127 1.797 1.456 1.397 1.079 2.810 4.114 2.269 1.055 0.673 1.606 2.980 5.317 1.393 1.028 2.282 3.964 0.585 1.163 4.879 1.886 1.604 1.172 0.802 1264 chr20 50350625 50386727 + 0 NA intron (NM_006045, intron 1 of 27) L2b|LINE|L2 16274 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 2.199 0.519 0.158 0.856 1.385 2.102 1.356 1.335 5.960 2.561 1.552 1.260 0.777 0.946 1.386 2.087 0.581 1.739 0.366 0.446 1.197 0.869 0.468 1.346 1.695 1.224 0.667 1.832 1.101 3.099 0.806 0.909 1.500 2.036 2.034 0.814 2.018 1.123 1.175 0.541 0.483 0.564 26 chr1 23303208 23339204 + 0 NA Intergenic AluSx3|SINE|Alu 21137 NM_001242521 729059 Hs.236896 NM_001242521 ENSG00000227868 C1orf234 - chromosome 1 open reading frame 234 protein-coding 0.160 0.088 0.038 0.167 0.256 0.026 0.072 0.103 0.388 0.114 0.085 0.165 0.021 0.030 3.338 0.285 0.024 0.188 0.030 0.038 0.063 0.038 0.061 0.073 0.233 0.099 0.063 0.156 0.210 0.145 0.113 0.028 0.078 0.353 0.104 0.064 0.097 0.123 0.142 0.078 0.027 0.014 277 chr10 126722306 126735606 + 0 NA intron (NM_001321013, intron 1 of 9) AluSx1|SINE|Alu -7517 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 0.227 1.471 0.548 0.647 1.812 0.183 1.203 1.402 4.386 2.386 0.489 0.616 0.791 1.355 0.471 3.257 0.258 1.506 0.052 0.103 1.038 0.773 0.250 2.014 0.578 0.276 0.175 0.393 0.429 1.512 0.185 0.784 1.341 3.046 0.980 1.577 0.774 0.162 1.442 1.010 0.013 0.019 586 chr14 65720294 65726145 + 0 NA Intergenic Intergenic -34154 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 2.956 0.782 0.138 3.186 2.901 1.032 2.463 5.481 12.635 4.598 9.013 5.342 3.813 5.562 7.374 7.174 0.259 5.805 0.068 0.024 8.448 7.298 0.075 1.205 4.281 3.957 1.768 4.979 9.953 1.445 1.558 1.406 6.888 1.324 1.857 1.366 1.959 1.581 8.278 9.443 0.461 0.622 1352 chr22 46136798 46142858 + 0 NA intron (NM_013236, intron 9 of 11) intron (NM_013236, intron 9 of 11) -16576 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 1.564 1.257 0.337 0.137 0.577 0.355 1.205 0.156 7.696 2.425 10.508 0.673 0.330 0.920 2.350 0.493 0.425 0.244 0.048 1.208 1.170 0.008 0.364 0.045 0.126 0.038 0.152 0.082 0.537 0.059 1.495 2.912 0.750 0.214 0.653 3.761 0.115 0.920 0.302 0.026 171 chr1 156653997 156684123 + 0 NA TTS (NM_001199723) TTS (NM_001199723) 6399 NM_001878 1382 Hs.405662 NM_001878 ENSG00000143320 CRABP2 CRABP-II|RBP6 cellular retinoic acid binding protein 2 protein-coding 0.571 0.464 0.049 1.039 1.222 0.161 0.385 0.870 5.415 1.783 1.003 2.496 0.260 2.686 1.671 2.266 2.416 0.522 0.133 0.166 1.108 0.634 0.169 0.213 0.650 0.132 0.130 0.678 0.148 0.538 0.933 0.089 1.699 1.213 0.676 0.293 1.315 1.995 0.807 0.141 0.092 0.054 1268 chr20 52194639 52244557 + 0 NA Intergenic L1M5|LINE|L1 -5295 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 3.573 3.210 1.373 1.013 2.332 2.857 2.460 1.286 5.653 4.256 4.640 1.388 2.527 2.299 3.840 1.791 3.490 1.979 0.088 2.018 2.162 2.161 1.158 4.362 5.275 2.503 1.178 1.670 6.435 2.787 3.632 1.588 2.049 2.099 2.522 1.445 2.052 5.737 2.497 2.896 2.788 2.724 905 chr17 73835472 73853295 + 0 NA intron (NM_012478, intron 4 of 7) intron (NM_012478, intron 4 of 7) -3585 NM_199242 201294 Hs.41045 NM_199242 ENSG00000092929 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D protein-coding 3.011 4.117 1.429 1.588 3.682 0.308 2.630 1.938 8.727 4.916 2.788 2.554 1.910 2.575 1.824 3.382 1.479 0.796 1.229 0.573 1.837 1.602 0.672 0.861 5.235 3.131 1.171 2.038 1.109 2.186 1.286 0.427 1.884 5.145 0.718 1.641 2.242 1.458 1.834 1.289 0.623 0.376 248 chr10 48325172 48343613 + 0 NA Intergenic Intergenic -2195 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 0.847 1.117 0.331 0.989 1.308 0.262 1.922 1.208 0.273 0.087 0.309 0.962 0.971 0.749 3.196 3.832 0.527 1.880 0.049 0.022 1.259 0.978 0.156 0.042 3.302 1.941 0.975 0.774 0.812 1.352 0.750 0.493 0.857 1.473 2.568 1.017 0.418 0.105 2.501 1.338 2.117 1.490 1393 chr3 71626832 71635951 + 0 NA intron (NM_001012505, intron 1 of 6) CpG-18683 1513 NM_001244808 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 5.446 4.549 1.847 1.047 3.116 3.056 3.504 0.748 10.621 7.803 4.029 2.083 1.983 4.289 1.679 2.657 3.481 2.412 2.827 3.040 2.060 2.702 0.145 0.029 5.353 3.098 1.534 1.619 2.883 2.169 0.938 2.520 3.270 2.411 10.808 1.796 2.141 1.326 4.425 4.674 0.057 0.056 226 chr1 249106825 249121813 + 0 NA intron (NM_030645, intron 2 of 6) intron (NM_030645, intron 2 of 6) 5246 NM_001322463 80851 Hs.298573 NM_030645 ENSG00000175137 SH3BP5L - SH3 binding domain protein 5 like protein-coding 0.991 1.111 0.331 0.329 0.707 0.689 0.789 0.366 1.733 1.104 1.034 0.361 0.302 0.922 0.630 0.796 0.352 0.701 0.274 0.946 0.946 0.856 0.669 1.552 1.528 4.721 1.826 0.613 1.555 1.174 1.001 0.630 1.311 0.853 0.605 0.474 0.701 0.782 1.550 1.151 8.961 8.720 523 chr13 43613400 43635437 + 0 NA intron (NM_013238, intron 1 of 5) intron (NM_013238, intron 1 of 5) 27056 NM_013238 29103 Hs.438830 NM_013238 ENSG00000120675 DNAJC15 DNAJD1|HSD18|MCJ DnaJ heat shock protein family (Hsp40) member C15 protein-coding 1.081 0.248 3.049 0.381 0.800 0.867 0.247 0.633 1.127 0.343 0.469 0.511 0.059 0.812 0.461 0.426 0.421 0.593 0.050 0.024 0.544 0.303 0.037 1.373 0.446 0.173 0.114 0.509 1.013 0.853 0.048 0.796 1.939 1.856 0.116 1.223 1.028 0.064 0.315 0.752 0.570 0.582 1848 chr8 53242008 53258719 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 72076 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 0.056 0.052 0.015 0.341 0.580 0.060 0.607 0.025 3.129 0.683 0.461 0.884 0.340 0.490 0.081 0.302 0.012 0.066 3.055 0.257 0.046 0.032 0.009 0.627 0.077 0.058 0.014 0.436 0.078 0.541 0.064 1.218 0.354 0.474 3.549 0.360 0.075 0.028 0.170 0.019 0.012 0.003 902 chr17 73543601 73555233 + 0 NA intron (NM_004524, intron 2 of 24) intron (NM_004524, intron 2 of 24) 27634 NM_004524 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL2, scribble cell polarity complex component protein-coding 2.154 0.334 1.569 0.783 1.606 0.454 1.303 0.581 5.995 2.322 3.401 1.121 0.561 0.957 1.423 0.982 1.219 0.341 1.359 0.071 1.643 1.280 0.885 0.268 0.293 0.145 0.107 1.143 0.242 4.771 0.116 1.660 2.648 2.746 0.057 1.212 3.932 0.228 1.149 0.027 0.058 0.026 632 chr15 52384224 52397198 + 0 NA Intergenic Intergenic 14261 NM_020396 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 0.184 2.303 0.010 0.573 0.465 0.248 0.168 0.262 0.820 0.216 0.114 0.392 0.744 0.621 1.072 2.049 0.479 4.368 0.039 0.011 2.562 2.250 0.761 14.821 1.051 0.798 0.340 0.101 4.179 0.676 2.129 1.360 1.059 0.357 4.000 0.854 0.204 0.137 1.507 2.047 0.231 0.168 1846 chr8 48421505 48441450 + 0 NA intron (NR_104581, intron 6 of 16) AluY|SINE|Alu 219249 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 0.327 3.133 0.689 0.988 2.099 4.277 1.174 0.900 2.077 0.587 0.856 0.747 0.701 4.049 0.560 0.896 0.755 1.626 0.050 0.014 2.992 2.276 0.811 2.593 1.412 2.000 1.069 0.829 0.749 3.017 0.673 3.466 2.230 0.807 1.282 1.262 1.238 1.661 1.717 0.482 0.081 0.031 1940 chr9 73024159 73039156 + 0 NA Intergenic Intergenic -2084 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 2.401 2.963 1.646 1.986 4.626 1.610 7.500 1.337 8.196 5.128 2.904 2.477 1.773 1.556 1.682 3.086 1.703 2.985 1.155 3.743 3.636 4.455 1.220 2.084 3.877 1.911 0.675 0.883 2.648 3.974 6.584 1.881 3.619 7.542 4.195 1.354 2.575 2.508 1.919 1.547 4.686 3.947 892 chr17 60931863 60981091 + 0 NA Intergenic Intergenic -65099 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 0.245 0.364 0.030 0.220 0.418 0.061 0.288 0.267 5.643 1.908 1.392 0.480 0.199 0.434 0.874 1.086 0.170 0.437 0.035 0.020 0.496 0.266 0.062 0.086 0.201 0.067 0.057 0.137 0.237 0.192 0.153 0.303 0.841 0.354 0.414 0.489 0.555 0.138 0.264 0.241 0.027 0.015 641 chr15 67126185 67136183 + 0 NA Intergenic Intergenic 117669 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.977 1.431 3.929 0.511 0.879 0.668 1.161 1.247 1.878 0.729 1.077 0.504 0.382 0.683 1.357 2.964 1.605 0.918 0.065 0.083 1.268 1.051 1.736 2.740 0.887 0.718 0.392 0.480 1.778 2.064 1.516 1.609 2.360 2.603 0.796 1.026 3.040 0.741 0.617 0.267 0.507 0.508 1892 chr8 123697709 123703770 + 0 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 5606 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 2.566 0.502 2.294 0.908 2.285 0.042 4.943 4.526 3.539 1.410 2.452 0.811 0.117 3.838 4.438 1.918 1.232 2.626 0.115 0.023 2.477 1.587 0.074 0.140 0.424 0.559 0.387 1.724 0.176 0.537 0.059 0.104 0.995 5.478 0.022 0.068 0.526 0.057 4.027 0.251 0.052 0.012 195 chr1 200320741 200365197 + 0 NA promoter-TSS (NR_040064) promoter-TSS (NR_040064) -49 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 0.159 0.692 0.008 0.124 0.265 2.091 0.232 0.342 1.649 0.400 1.444 0.398 0.125 0.441 0.726 0.743 0.331 1.670 0.032 0.024 1.379 0.567 0.086 1.608 0.925 0.382 0.242 0.214 0.742 1.476 0.151 0.599 1.589 0.111 0.262 0.358 0.367 0.256 0.442 0.372 0.052 0.051 822 chr17 33405326 33422830 + 0 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) 2270 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 2.280 2.219 0.156 2.535 4.091 2.849 2.705 1.718 2.561 1.380 1.499 1.963 1.551 3.146 0.852 3.388 0.762 1.244 0.234 0.292 2.082 1.958 0.366 3.857 3.964 1.023 0.511 1.640 3.461 3.105 1.328 1.472 2.223 4.035 3.555 1.384 1.166 2.012 1.978 1.608 0.632 0.434 1461 chr4 2413124 2420459 + 0 NA intron (NM_001172657, intron 1 of 6) intron (NM_001172657, intron 1 of 6) 3579 NM_001172658 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 0.455 4.095 0.017 0.750 1.525 1.917 1.434 2.382 3.522 2.264 1.339 1.734 2.781 1.543 0.454 4.472 0.286 2.568 1.234 0.094 2.340 3.494 0.914 4.224 2.033 3.676 1.736 1.416 4.879 2.604 7.431 3.011 0.912 4.476 8.498 0.961 0.302 3.432 1.356 2.544 4.393 3.654 1983 chr9 137257445 137277715 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) -3561 NM_001291920 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.588 2.200 0.030 1.196 2.785 0.158 0.324 0.026 3.451 1.461 0.195 1.401 0.595 0.153 1.948 2.209 1.135 0.644 0.030 0.055 1.953 1.858 0.163 4.359 2.460 2.071 1.048 0.897 0.084 2.485 0.179 0.019 0.281 3.019 0.150 1.113 0.577 0.225 1.099 0.108 0.730 0.342 168 chr1 156229918 156234888 + 0 NA intron (NM_001323617, intron 14 of 22) intron (NM_001323617, intron 14 of 22) -14495 NR_073610 79957 Hs.235873 NM_024897 ENSG00000160781 PAQR6 PRdelta progestin and adipoQ receptor family member 6 protein-coding 0.525 0.362 0.000 1.681 1.746 0.175 1.559 0.387 0.268 0.096 0.156 1.812 5.081 0.659 0.077 4.171 0.039 0.621 0.100 0.098 0.960 0.678 0.164 0.131 0.260 0.076 0.104 0.154 0.723 0.147 0.973 0.047 0.160 2.031 5.125 0.059 0.049 0.528 4.081 1.632 0.614 0.306 835 chr17 37351556 37359256 + 0 NA Intergenic Intergenic -1130 NM_000981 6143 Hs.381061 NM_000981 ENSG00000108298 RPL19 L19 ribosomal protein L19 protein-coding 11.429 4.546 1.014 1.305 3.011 4.510 3.169 1.539 3.174 2.157 2.539 1.480 2.369 2.932 3.086 3.720 1.390 1.639 1.119 2.673 2.536 2.570 2.223 5.285 4.747 3.044 1.406 1.977 4.133 4.990 2.724 1.884 2.477 2.936 3.051 2.390 1.735 5.849 2.825 2.180 2.026 1.300 105 chr1 145523402 145563259 + 0 NA 3' UTR (NM_001303040, exon 27 of 27) 3' UTR (NM_001303040, exon 27 of 27) -5879 NM_144698 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 0.352 0.432 0.375 0.333 0.512 0.579 0.145 0.363 7.567 1.592 1.759 0.756 1.239 0.367 0.662 1.402 0.082 1.079 0.392 0.100 0.594 0.325 0.154 0.414 0.560 0.453 0.223 0.436 1.583 0.706 0.850 0.480 2.493 0.551 1.273 0.857 0.494 0.600 0.591 0.560 0.549 0.493 572 chr14 50099048 50103360 + 0 NA exon (NM_018139, exon 1 of 3) exon (NM_018139, exon 1 of 3) 744 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 6.303 4.014 1.923 1.801 6.448 6.944 7.937 2.380 7.882 7.158 7.304 3.863 2.627 4.924 5.871 3.259 1.980 3.675 2.223 1.866 4.793 6.163 1.739 4.617 4.915 7.742 3.357 3.263 4.358 5.588 7.240 3.980 4.525 10.958 7.067 3.435 3.197 10.530 6.564 3.466 2.254 1.353 740 chr16 57479867 57482650 + 0 NA promoter-TSS (NM_020312) promoter-TSS (NM_020312) -79 NM_020312 57017 Hs.513632 NM_020312 ENSG00000088682 COQ9 C16orf49|COQ10D5 coenzyme Q9 protein-coding 3.609 5.223 0.937 1.339 3.390 4.443 3.638 1.136 4.069 2.712 3.503 2.569 2.456 9.357 4.091 3.486 2.163 3.054 3.904 2.391 3.048 3.416 4.361 8.696 4.241 7.298 3.922 1.900 1.511 5.692 4.858 7.021 6.040 5.089 5.061 2.958 2.947 5.526 3.687 1.296 1.923 1.510 826 chr17 35712660 35718088 + 0 NA intron (NM_198839, intron 4 of 59) intron (NM_198839, intron 4 of 59) 685 NM_198836 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 9.512 2.983 0.354 0.601 4.888 2.657 3.748 2.224 6.633 3.358 3.235 1.220 1.747 3.636 5.221 2.938 1.635 1.418 0.731 2.197 2.601 2.649 2.618 4.287 2.331 2.708 1.377 1.380 2.339 3.956 2.432 2.287 3.594 4.085 2.256 2.368 2.293 3.295 2.299 0.353 1.931 0.917 921 chr17 78141196 78155129 + 0 NA intron (NR_047566, intron 1 of 21) AluSx|SINE|Alu -4145 NM_024110 79092 Hs.675480 NM_024110 ENSG00000141527 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family member 14 protein-coding 0.160 0.220 0.013 0.313 0.371 0.173 0.127 0.234 2.000 0.319 0.259 0.157 0.016 0.219 0.242 0.373 0.054 0.134 0.037 0.050 0.194 0.104 0.095 0.388 0.165 0.044 0.056 0.114 0.169 0.477 0.098 0.413 4.832 0.332 0.039 2.731 0.435 0.193 0.062 0.027 0.012 0.015 1592 chr5 149431227 149448308 + 0 NA intron (NM_001288705, intron 13 of 20) AluSc8|SINE|Alu 26436 NR_109969 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 0.149 0.932 0.011 0.864 0.468 0.056 0.236 0.376 0.442 0.169 0.100 0.557 1.745 0.577 0.135 1.681 0.034 0.228 0.147 0.032 0.326 0.128 0.117 0.143 0.195 0.251 0.123 0.095 3.138 0.185 0.304 0.019 0.214 0.154 0.109 0.043 0.053 0.150 0.588 0.653 0.044 0.021 1852 chr8 59504787 59511084 + 0 NA intron (NM_003580, intron 22 of 30) intron (NM_003580, intron 22 of 30) 42207 NM_001007069 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 0.307 1.938 0.039 1.746 2.419 0.271 0.900 0.922 0.307 0.129 0.569 1.092 1.478 1.611 0.981 1.612 0.015 1.635 0.064 0.087 3.370 3.668 0.083 9.895 0.279 0.511 0.215 1.240 6.614 0.293 0.521 5.293 0.541 0.336 0.249 0.719 0.062 0.064 1.462 1.427 0.462 0.474 1514 chr5 1322799 1331173 + 0 NA intron (NM_030782, intron 9 of 16) intron (NM_030782, intron 9 of 16) -17494 NR_039662 100616235 NR_039662 ENSG00000263670 MIR4457 mir-4457 microRNA 4457 ncRNA 0.103 2.146 5.965 0.386 1.302 2.999 0.967 0.220 3.224 1.733 2.282 0.071 0.296 0.207 1.450 1.170 1.141 1.905 0.132 2.136 1.152 1.423 4.932 0.278 10.663 16.467 6.203 1.682 0.701 2.068 0.298 0.936 3.007 3.214 0.708 0.962 2.097 0.661 2.121 0.661 6.428 5.313 706 chr16 11835167 11848976 + 0 NA Intergenic L1MB7|LINE|L1 -5337 NR_136672 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 1.325 1.664 1.925 0.343 1.087 1.454 1.245 0.244 2.526 1.600 0.978 0.371 0.188 0.845 0.865 1.032 0.750 0.826 3.461 0.230 1.043 1.186 1.193 1.867 1.554 0.770 0.406 0.515 0.614 2.284 1.270 1.822 1.803 1.804 1.091 0.513 0.793 1.277 0.872 0.438 0.357 0.221 1042 chr19 42745390 42763670 + 0 NA exon (NM_006494, exon 2 of 4) exon (NM_006494, exon 2 of 4) 3521 NM_001308402 2077 Hs.655969 NM_006494 ENSG00000105722 ERF CHYTS|CRS4|PE-2|PE2 ETS2 repressor factor protein-coding 4.426 5.993 1.051 0.863 3.249 3.739 2.097 0.612 nan 2.342 3.627 0.945 1.991 1.627 2.194 1.384 1.969 3.778 1.720 2.466 1.767 1.857 4.524 2.762 4.831 2.527 1.185 0.806 2.571 7.390 10.155 2.385 1.819 3.046 0.962 1.653 2.126 5.646 0.761 2.292 1.528 0.939 30 chr1 25235013 25299831 + 0 NA intron (NM_001031680, intron 1 of 5) L1ME3D|LINE|L1 -10652 NM_004350 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC runt related transcription factor 3 protein-coding 0.428 0.145 0.027 0.041 0.090 0.057 0.064 0.096 3.801 0.661 0.266 0.140 0.135 0.059 0.085 0.336 0.037 0.270 0.063 0.109 0.197 0.084 0.219 0.385 1.066 0.147 0.087 0.143 0.126 0.261 0.420 0.041 0.274 0.132 0.040 0.107 0.139 0.608 0.167 0.348 0.019 0.015 1510 chr5 300628 322952 + 0 NA intron (NM_001267556, intron 5 of 5) intron (NM_001267556, intron 5 of 5) 7499 NM_001242412 57491 Hs.50823 NM_020731 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 0.278 0.755 0.155 0.770 2.207 0.202 0.173 0.043 1.111 0.381 0.272 0.216 0.095 0.045 0.216 1.266 0.154 0.418 1.354 0.175 0.424 0.232 1.057 0.493 2.826 0.522 0.354 0.122 0.285 0.707 0.900 0.117 0.399 3.691 0.120 0.149 0.137 0.305 0.497 0.109 0.344 0.236 1844 chr8 42121395 42159871 + 0 NA intron (NM_001242778, intron 2 of 20) intron (NM_001242778, intron 2 of 20) 11813 NR_040009 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 0.882 0.424 0.092 1.735 3.636 0.199 1.627 1.120 4.835 1.670 4.267 0.872 0.481 2.449 1.002 1.137 0.037 1.224 0.374 0.309 3.351 3.221 0.711 0.320 2.905 1.751 0.782 0.244 1.077 0.592 0.473 0.137 0.859 2.500 2.763 0.800 0.417 0.430 0.591 0.892 1.069 0.954 1731 chr7 6046773 6061849 + 0 NA intron (NM_001326609, intron 2 of 4) intron (NM_001326609, intron 2 of 4) 3955 NM_001326611 7965 Hs.301613 NM_006303 ENSG00000106305 AIMP2 JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 protein-coding 1.933 1.654 3.066 0.443 1.381 0.983 2.845 0.536 nan 3.104 3.734 0.457 0.653 0.952 1.638 1.254 1.517 2.064 0.713 1.160 1.485 1.479 0.903 1.680 1.747 1.296 0.679 1.226 2.082 1.403 1.962 0.962 1.240 1.785 1.912 1.483 1.317 2.083 1.804 0.802 1.266 0.751 141 chr1 153693218 153704283 + 0 NA Intergenic HY3|scRNA|scRNA -1793 NM_001324475 65123 Hs.438723 NM_023015 ENSG00000143624 INTS3 C1orf193|C1orf60|INT3|SOSS-A|SOSSA integrator complex subunit 3 protein-coding 1.598 1.267 0.639 0.952 2.084 1.446 1.600 1.068 10.253 7.918 1.299 0.658 1.113 1.486 1.730 1.653 0.719 1.206 1.406 1.051 1.612 1.575 1.205 2.483 1.886 1.585 0.798 0.932 0.941 1.604 1.257 2.263 3.852 1.737 1.320 0.842 1.804 3.903 1.994 0.756 0.935 0.502 273 chr10 114830654 114841202 + 0 NA intron (NM_001146285, intron 4 of 12) AluJr|SINE|Alu 30814 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 0.532 1.856 0.053 0.772 1.495 4.734 0.522 0.960 2.165 0.863 0.598 0.468 0.427 1.099 0.729 2.750 0.813 2.329 0.056 0.066 1.443 1.101 0.986 1.774 2.836 0.881 0.552 0.989 1.761 2.905 1.358 1.309 1.686 2.106 2.595 1.484 1.393 0.673 1.237 0.627 0.409 0.386 1053 chr19 45593526 45605442 + 0 NA intron (NM_019121, intron 1 of 12) intron (NM_019121, intron 1 of 12) 3053 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 4.060 3.432 0.223 1.176 2.755 1.431 2.179 0.539 nan 2.286 2.513 0.944 1.495 1.136 1.750 1.319 0.873 1.880 1.505 1.029 2.195 2.330 1.448 1.289 2.284 1.124 0.563 1.246 1.277 2.364 4.964 3.849 1.132 3.314 1.073 0.770 1.836 1.628 2.814 0.832 0.996 0.684 25 chr1 23150859 23161467 + 0 NA intron (NM_017449, intron 3 of 15) L2b|LINE|L2 33556 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 5.281 0.912 0.192 2.415 3.855 0.066 3.181 2.476 8.939 2.768 3.245 3.344 0.632 2.134 2.439 4.363 1.954 0.585 0.066 0.026 0.823 0.553 0.132 0.155 1.589 0.427 0.189 2.484 1.073 0.526 0.968 0.253 2.213 3.540 0.970 1.707 2.059 0.173 0.839 0.358 0.869 0.712 1543 chr5 44930318 44972834 + 0 NA Intergenic Intergenic 142549 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 0.112 0.135 0.012 0.067 0.242 0.046 0.093 0.067 0.235 0.142 0.126 0.182 0.175 0.044 0.105 0.165 0.029 0.222 0.055 7.378 0.096 0.044 0.005 0.068 0.056 0.021 0.029 0.047 0.412 0.050 0.127 0.026 0.061 0.148 0.028 0.037 0.031 0.115 0.069 0.054 0.027 0.036 411 chr12 12865977 12895433 + 0 NA intron (NM_001130415, intron 1 of 1) AluJr|SINE|Alu 1854 NM_001130415 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 4.878 1.446 2.897 1.048 3.103 2.703 6.266 1.891 7.376 4.443 4.561 0.945 1.209 2.768 3.515 2.596 1.695 4.604 1.291 2.061 3.498 4.044 1.211 2.604 4.628 2.433 0.958 3.433 9.350 3.822 4.913 1.338 2.662 2.839 3.572 1.180 2.142 5.601 2.903 2.014 4.196 3.207 1443 chr3 181896420 181900583 + 0 NA Intergenic Intergenic 228349 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.293 0.075 8.397 0.092 0.202 0.031 0.148 0.050 3.487 1.465 1.668 0.384 0.309 0.145 0.205 0.024 0.047 0.050 0.086 0.053 0.066 0.044 0.018 0.093 0.186 0.257 0.069 0.023 0.047 0.414 0.036 0.038 0.162 0.041 0.025 363 chr11 74405276 74411741 + 0 NA intron (NM_001278473, intron 9 of 10) L2c|LINE|L2 13904 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 0.056 0.814 0.010 0.058 0.133 0.030 0.072 0.016 nan 0.075 0.093 0.112 0.552 0.403 0.457 0.493 0.522 0.030 0.181 0.090 0.375 0.145 0.688 0.084 0.060 0.096 0.246 0.667 0.120 6.277 1.236 0.071 0.047 0.150 0.065 0.288 1.177 0.059 0.009 0.008 177 chr1 160976877 160994061 + 0 NA intron (NM_016946, intron 1 of 9) (CAA)n|Simple_repeat|Simple_repeat 5664 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 1.983 0.784 4.692 1.323 3.085 0.653 2.589 2.457 4.724 2.906 4.259 1.293 1.147 3.055 1.891 2.678 1.529 0.134 2.918 0.029 2.116 1.643 0.196 0.753 1.808 0.393 0.309 1.484 0.181 1.878 0.499 0.293 1.471 4.977 0.538 1.584 1.001 0.886 2.041 0.341 0.080 0.030 724 chr16 30455605 30460935 + 0 NA promoter-TSS (NM_012248) promoter-TSS (NM_012248) -974 NM_012248 22928 Hs.118725 NM_012248 ENSG00000179918 SEPHS2 SPS2|SPS2b selenophosphate synthetase 2 protein-coding 2.238 2.980 0.314 0.569 1.813 2.893 1.168 0.238 2.410 1.915 1.422 0.660 0.697 1.628 1.920 1.054 0.468 1.197 2.137 1.687 1.052 1.155 1.075 1.447 1.671 1.414 0.585 0.811 1.919 2.656 3.486 5.101 1.995 1.671 1.942 0.593 0.962 2.040 1.183 0.839 1.149 0.794 162 chr1 155530545 155535322 + 0 NA promoter-TSS (NM_018489) promoter-TSS (NM_018489) -609 NM_018489 55870 Hs.491060 NM_018489 ENSG00000116539 ASH1L ASH1|ASH1L1|KMT2H ASH1 like histone lysine methyltransferase protein-coding 6.366 5.833 2.208 2.365 8.061 6.491 6.806 3.424 9.607 6.927 6.185 3.749 5.166 5.621 4.799 4.709 2.550 3.908 4.944 4.274 4.199 5.607 3.951 13.581 2.719 6.029 3.183 3.105 4.537 6.261 5.689 2.196 4.227 9.984 5.539 3.481 4.647 13.447 6.104 2.837 3.070 2.128 1172 chr2 174825245 174839596 + 0 NA Intergenic AluSz|SINE|Alu -1990 NM_003111 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 2.841 3.189 3.051 1.232 3.798 3.523 6.240 1.897 8.598 5.192 5.279 1.684 1.420 3.368 5.034 2.767 1.337 1.017 1.330 2.730 2.957 3.979 1.783 2.556 4.742 2.959 1.044 4.536 2.160 3.909 2.374 1.208 2.711 4.214 2.747 0.988 1.652 4.530 1.875 2.131 2.114 1.983 955 chr18 52753612 52771460 + 0 NA Intergenic Intergenic 29001 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 0.265 0.416 0.087 0.138 0.231 0.159 0.316 0.390 1.353 0.353 0.812 0.443 0.092 1.262 0.448 0.172 0.069 1.174 0.050 0.008 3.078 2.963 0.021 0.072 0.098 0.030 0.039 0.741 0.119 0.497 0.047 0.563 0.145 0.251 0.016 0.329 0.055 0.055 0.225 0.321 0.558 0.562 1185 chr2 213765381 213786428 + 0 NA Intergenic MIRb|SINE|MIR -15077 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 0.543 0.279 0.729 1.253 2.877 0.069 1.727 1.024 5.663 2.726 3.454 1.381 0.192 3.701 2.588 1.506 1.121 0.184 0.142 2.163 1.193 0.012 0.790 0.094 0.043 0.052 1.616 0.252 0.701 0.058 0.135 1.688 1.529 0.022 1.560 3.229 0.072 0.211 0.604 0.021 0.007 1459 chr4 1238822 1244983 + 0 NA intron (NM_001012614, intron 1 of 9) CpG 1006 NM_001328 1487 Hs.208597 NM_001328 ENSG00000159692 CTBP1 BARS C-terminal binding protein 1 protein-coding 5.614 5.549 3.641 1.447 8.458 2.302 6.672 1.921 7.519 5.433 5.383 2.404 1.913 2.256 4.315 2.680 1.939 1.572 2.714 2.184 2.197 3.540 3.885 3.383 6.382 4.695 2.340 2.489 5.239 3.885 7.972 3.355 2.514 9.763 4.054 1.850 2.819 6.227 2.039 2.481 2.056 1.130 1918 chr8 145001647 145032482 + 0 NA promoter-TSS (NM_201383) promoter-TSS (NM_201383) -372 NM_201383 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 8.200 6.413 1.186 1.874 5.086 4.359 7.647 3.128 11.033 8.483 2.443 4.823 2.703 2.937 4.010 5.200 4.704 2.907 0.882 0.747 2.752 4.192 2.213 3.342 6.053 6.252 2.481 1.587 11.329 6.787 9.102 1.765 2.888 8.520 3.290 1.616 5.954 7.769 1.591 4.007 4.778 2.851 597 chr14 69141194 69204450 + 0 NA Intergenic Intergenic -77318 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1.208 0.732 0.051 0.649 0.560 0.120 1.466 2.097 4.166 1.671 2.291 1.323 2.342 1.167 1.255 1.767 0.166 0.989 0.060 0.037 1.968 1.102 0.048 0.072 1.256 2.296 1.031 1.253 4.132 0.259 1.216 0.229 0.613 0.302 0.512 0.279 0.267 0.178 1.858 2.748 2.198 2.211 1615 chr6 1756109 1773054 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 153900 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.672 0.134 0.043 0.246 0.680 0.029 0.252 0.142 7.076 3.394 3.122 1.230 0.060 0.186 0.486 0.517 0.198 0.203 0.480 0.013 0.135 0.043 0.026 0.075 0.143 0.032 0.023 0.208 0.143 0.106 0.120 0.214 0.245 0.716 0.082 0.174 0.337 0.138 0.112 0.117 0.017 0.003 1370 chr3 31944254 31962976 + 0 NA intron (NM_017784, intron 1 of 11) AluSx1|SINE|Alu -69651 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 0.288 0.120 0.023 0.010 0.121 0.111 0.091 0.039 0.440 0.055 0.068 0.063 0.050 0.076 0.149 0.152 0.040 0.292 3.145 0.015 0.211 0.073 0.142 0.040 0.093 0.065 0.084 0.098 0.213 0.211 0.143 0.765 0.147 0.087 0.089 0.039 0.048 0.065 0.139 0.110 0.015 0.011 1580 chr5 134572981 134586765 + 0 NA intron (NR_037895, intron 2 of 3) intron (NR_037895, intron 2 of 3) 3994 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 0.162 1.254 0.014 1.398 0.944 0.027 0.843 1.604 0.921 0.221 0.534 0.551 2.565 2.821 0.453 4.894 0.118 2.220 0.029 0.010 4.277 3.355 0.098 1.436 3.506 1.824 1.134 0.686 4.861 0.623 0.951 3.004 0.741 0.589 5.478 0.641 0.059 0.492 1.520 2.633 0.787 0.879 1607 chr5 176918058 176926303 + 0 NA intron (NM_213636, intron 2 of 7) intron (NM_213636, intron 2 of 7) 2426 NM_213636 9260 Hs.533040 NM_005451 ENSG00000196923 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 protein-coding 4.869 5.435 0.543 1.124 3.300 2.834 4.645 1.921 2.836 1.932 0.927 2.955 2.013 3.099 1.997 3.918 0.944 3.038 0.424 0.602 2.516 3.211 1.442 1.801 4.329 4.095 2.066 1.107 12.634 1.739 5.748 1.073 1.784 3.669 2.363 1.141 0.730 3.686 2.259 3.269 2.570 1.985 896 chr17 69182587 69189819 + 0 NA intron (NR_104152, intron 1 of 3) intron (NR_104152, intron 1 of 3) 12117 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 0.801 2.604 0.068 2.327 2.956 0.113 3.335 3.221 0.601 0.380 0.933 4.770 1.974 3.917 0.839 4.498 0.278 2.738 0.027 0.690 0.542 0.050 0.038 0.294 0.100 0.021 1.174 3.127 0.056 0.040 0.054 0.037 2.059 0.097 0.185 0.081 0.072 3.612 4.675 1.250 0.987 661 chr15 80842064 80893475 + 0 NA intron (NM_014862, intron 14 of 18) intron (NM_014862, intron 14 of 18) -5675 NR_049837 100847042 NR_049837 ENSG00000172379 MIR5572 - microRNA 5572 ncRNA 0.598 0.249 0.074 0.489 0.642 0.182 0.193 1.401 6.416 1.019 1.379 1.047 0.534 0.897 0.680 2.237 0.089 0.573 0.152 0.046 1.291 0.838 0.024 0.065 0.600 0.184 0.116 0.368 1.035 0.580 0.040 2.244 3.976 0.426 1.501 2.079 1.687 0.128 0.383 0.474 0.055 0.033 1624 chr6 14762667 14779357 + 0 NA Intergenic Intergenic -475194 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 0.099 0.224 0.023 0.103 0.201 5.537 0.123 0.164 0.412 0.072 0.133 0.240 0.127 0.111 0.162 0.523 0.035 2.769 0.066 0.017 2.082 1.886 0.031 2.942 0.154 0.145 0.084 0.074 1.419 1.129 0.094 0.038 0.802 0.161 0.174 0.655 0.108 0.084 0.108 0.110 0.021 0.018 1189 chr2 219145485 219166247 + 0 NA intron (NM_001321436, intron 1 of 12) intron (NM_001321436, intron 1 of 12) -1141 NM_001321430 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 4.163 1.743 1.140 1.550 3.528 1.136 4.438 2.057 3.313 1.475 3.204 1.469 0.924 2.475 4.455 4.335 1.689 0.851 0.154 0.180 1.546 1.157 0.585 0.766 0.965 1.398 0.688 3.024 1.325 1.781 1.583 0.208 1.132 3.612 0.909 1.162 1.771 1.370 1.021 1.070 0.641 0.529 823 chr17 34100388 34123245 + 0 NA intron (NM_024302, intron 1 of 7) intron (NM_024302, intron 1 of 7) 10895 NM_024302 79148 Hs.380710 NM_024302 ENSG00000271447 MMP28 EPILYSIN|MM28|MMP-25|MMP-28|MMP25 matrix metallopeptidase 28 protein-coding 0.084 0.093 0.201 0.108 0.167 0.056 0.386 0.555 1.201 0.374 0.628 0.231 0.486 0.821 0.302 0.908 0.037 0.262 0.044 0.017 2.570 2.147 0.391 0.085 0.213 0.084 0.071 0.434 0.228 1.175 0.103 0.055 0.290 0.148 0.905 0.343 0.163 0.269 1.207 0.163 0.010 0.020 1905 chr8 140851794 140871078 + 0 NA intron (NM_031466, intron 21 of 22) intron (NM_031466, intron 21 of 22) -146137 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 0.097 0.096 0.016 0.020 0.060 0.020 0.050 0.016 0.297 0.117 0.067 0.044 0.017 0.029 0.054 0.099 0.010 0.082 4.948 0.029 0.064 0.019 0.038 0.064 0.187 0.034 0.012 0.043 0.202 0.180 0.056 0.067 0.073 0.096 0.031 0.013 0.082 0.121 0.021 0.012 0.021 0.013 1000 chr19 18106092 18115881 + 0 NA promoter-TSS (NM_001025604) promoter-TSS (NM_001025604) -955 NM_001025604 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 0.929 2.204 0.203 0.599 0.888 4.827 2.073 0.789 nan 1.240 0.587 0.343 0.676 1.048 1.996 1.736 0.441 1.075 0.429 0.375 2.417 3.072 1.940 5.405 1.909 1.398 0.794 1.268 0.900 7.194 3.163 2.329 2.453 1.470 2.428 1.836 1.590 4.363 1.674 0.539 0.371 0.305 1608 chr5 179229403 179236429 + 0 NA promoter-TSS (NM_001142298) promoter-TSS (NM_001142298) -472 NM_001142298 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 4.434 4.711 0.468 1.076 3.522 3.548 6.161 1.941 5.342 3.721 2.584 1.126 1.680 3.629 3.060 3.527 1.284 1.804 2.411 1.060 3.520 4.651 2.330 3.863 3.715 6.000 2.956 2.362 3.880 6.750 7.759 3.753 4.234 3.271 3.605 1.547 1.385 4.961 1.661 1.278 3.106 2.323 1727 chr7 5547745 5554845 + 0 NA intron (NM_001321213, intron 1 of 4) AluY|SINE|Alu 2134 NM_024963 80028 Hs.623974 NM_024963 ENSG00000155034 FBXL18 Fbl18 F-box and leucine rich repeat protein 18 protein-coding 4.907 4.559 1.390 0.863 1.714 2.099 3.097 1.683 nan 3.269 4.672 1.121 1.439 1.836 4.637 2.719 1.103 1.783 0.522 0.607 3.613 3.984 1.166 2.672 5.769 6.809 2.887 1.581 1.915 3.500 4.057 1.074 4.119 2.797 2.776 2.276 1.781 3.359 2.679 2.882 0.969 0.521 1553 chr5 57026549 57042545 + 0 NA Intergenic Intergenic 88060 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 0.636 0.612 0.016 0.901 1.155 0.337 0.950 1.978 0.259 0.188 0.199 1.463 0.862 1.517 1.511 2.241 0.089 3.762 0.056 0.630 0.279 0.074 0.117 1.208 0.905 0.672 0.559 1.481 0.178 0.559 0.054 0.213 0.267 0.366 0.315 0.171 0.129 0.820 0.122 0.421 0.534 75 chr1 67389232 67401513 + 0 NA promoter-TSS (NM_001077701) promoter-TSS (NM_001077701) -554 NM_001077701 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 3.235 3.297 1.131 1.199 3.811 2.650 4.507 1.304 3.625 2.249 1.560 1.083 1.299 1.993 2.207 1.670 1.288 2.255 1.909 1.198 1.174 1.009 1.235 2.822 3.185 1.576 0.925 2.651 2.259 1.889 2.244 1.753 1.004 3.635 7.107 1.074 1.628 2.355 2.607 1.786 0.827 0.494 558 chr14 32669212 32674294 + 0 NA TTS (NR_125730).3 TTS (NR_125730).3 502 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 1.642 1.828 5.833 1.450 2.770 2.856 3.511 1.391 17.020 17.708 3.388 2.188 1.186 1.868 1.206 1.826 0.657 2.971 1.631 4.170 1.579 1.550 0.656 2.110 3.227 1.887 0.844 1.285 1.512 3.972 3.069 3.041 1.203 2.955 3.854 1.014 1.048 3.464 2.606 1.544 0.725 0.494 1895 chr8 124675139 124706679 + 0 NA Intergenic Intergenic -25719 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 1.253 0.881 0.038 1.802 2.583 0.076 2.199 2.475 0.807 0.323 2.013 1.466 0.913 3.665 1.185 4.025 0.899 1.303 0.091 0.017 3.225 2.336 0.042 0.058 1.141 0.214 0.143 1.234 4.596 0.216 0.707 0.270 1.038 2.642 1.447 0.112 0.413 0.067 1.977 0.997 0.133 0.140 582 chr14 62160360 62185830 + 0 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 8755 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 3.453 1.738 0.580 0.433 2.417 1.750 1.485 0.921 1.872 1.325 2.293 1.053 1.047 1.875 2.338 0.996 0.373 0.883 0.319 0.353 2.034 1.729 0.206 0.895 0.855 0.868 0.429 0.704 1.162 0.958 0.696 1.572 2.756 1.604 1.660 1.170 0.350 0.968 1.825 2.320 0.384 0.287 430 chr12 29300233 29303510 + 0 NA promoter-TSS (NM_001271783) promoter-TSS (NM_001271783) -65 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 5.071 3.499 0.093 0.059 0.118 0.039 0.060 1.270 4.935 2.337 0.029 0.044 10.406 0.034 2.957 0.174 0.262 1.300 0.060 0.021 2.242 0.541 3.455 2.919 1.212 0.972 0.169 0.853 6.076 0.049 0.021 0.085 0.085 0.149 0.125 2.271 0.139 0.053 1760 chr7 55954306 55956643 + 0 NA intron (NM_182633, intron 1 of 6) G-rich|Low_complexity|Low_complexity 504 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 4.030 3.062 3.177 0.592 2.752 1.626 5.596 0.895 8.393 6.740 22.265 0.623 0.706 1.324 7.480 1.220 2.075 1.959 1.484 2.976 1.743 1.984 2.136 0.568 4.492 1.417 0.528 3.220 2.270 4.284 2.496 1.559 1.679 4.126 2.655 1.459 3.292 4.457 1.999 0.781 1.675 0.984 940 chr18 6715842 6721388 + 0 NA Intergenic Intergenic 11246 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 0.052 0.149 5.118 0.068 0.075 0.067 0.507 0.019 0.849 0.392 1.557 0.022 0.390 0.017 0.017 0.277 0.018 0.093 0.049 0.013 0.893 0.039 0.101 0.032 0.014 0.142 0.044 0.102 0.043 0.047 0.048 0.419 0.066 1.493 0.115 0.158 0.014 0.009 575 chr14 50405929 50449248 + 0 NA Intergenic AluSx|SINE|Alu -5529 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 2.214 0.402 1.426 0.818 2.464 0.651 2.353 2.352 7.318 2.543 5.543 2.104 1.375 1.773 1.923 2.269 0.962 1.283 0.203 0.049 3.967 2.628 0.138 0.165 0.538 0.131 0.123 2.083 1.377 1.978 0.395 0.412 2.026 2.622 1.729 0.889 1.027 0.360 0.840 1.017 1.161 0.904 1936 chr9 35920134 35925783 + 0 NA Intergenic AluSc|SINE|Alu 13478 NR_024283 158376 Hs.302677 NR_024283 ENSG00000235387 LINC00961 SPAR long intergenic non-protein coding RNA 961 ncRNA 0.077 2.001 0.033 0.735 0.843 0.960 0.467 0.114 0.432 0.101 0.492 0.129 0.397 0.909 2.087 2.586 0.458 2.609 0.091 0.123 6.013 5.476 0.195 7.695 0.547 0.128 0.139 0.270 5.937 1.276 0.352 0.173 1.031 0.140 0.131 0.586 0.043 0.548 1.957 0.230 5.165 4.892 175 chr1 157961746 157998579 + 0 NA intron (NM_001286349, intron 1 of 12) (CA)n|Simple_repeat|Simple_repeat 17099 NM_001286349 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 0.653 3.410 0.091 1.076 1.981 3.745 1.615 1.412 0.220 0.206 0.401 0.533 3.998 1.879 0.503 3.042 0.931 3.064 0.097 0.034 3.832 3.427 1.831 2.196 7.555 3.134 1.317 0.825 3.665 1.086 1.816 0.471 0.866 1.383 2.516 1.091 0.210 4.141 3.792 2.194 2.079 2.057 1339 chr22 38137306 38151944 + 0 NA intron (NM_007032, intron 1 of 13) L2c|LINE|L2 2384 NM_007032 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 2.590 3.382 0.317 1.871 4.543 3.074 5.793 1.320 7.041 4.079 2.828 3.002 1.753 1.269 4.279 3.980 2.167 1.913 0.386 0.673 1.048 1.048 0.689 2.701 5.353 2.178 1.078 1.625 1.874 3.969 2.502 1.297 2.866 5.733 4.643 1.480 3.723 2.385 2.289 1.931 0.275 0.247 1574 chr5 133798349 133823525 + 0 NA Intergenic L1ME4a|LINE|L1 -31306 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 0.295 0.703 0.335 0.349 0.528 0.759 0.499 0.286 1.712 0.697 0.713 0.465 0.337 0.416 0.314 0.847 0.280 0.513 0.169 0.089 0.470 0.597 0.510 0.972 0.713 0.778 0.303 0.289 0.608 1.154 4.694 0.612 0.540 0.662 0.423 0.247 0.143 0.743 0.295 0.647 0.652 0.415 1954 chr9 109645298 109661121 + 0 NA intron (NM_021224, intron 1 of 12) intron (NM_021224, intron 1 of 12) 27831 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 0.408 0.541 2.186 0.864 1.310 0.880 1.131 0.639 1.946 0.920 0.930 0.940 0.388 0.810 0.487 1.908 0.835 0.531 0.133 0.006 1.017 0.483 0.395 0.425 1.500 1.033 0.576 0.842 0.810 0.198 0.678 0.274 0.344 1.361 0.221 0.139 0.425 0.359 1.019 0.387 0.724 0.820 166 chr1 155902511 155916919 + 0 NA Intergenic AluSx1|SINE|Alu -1765 NM_181885 339403 Hs.449914 NM_181885 ENSG00000173080 RXFP4 GPCR142|GPR100|RLN3R2|RXFPR4 relaxin/insulin like family peptide receptor 4 protein-coding 1.595 1.677 0.462 0.853 1.848 3.661 1.063 0.945 5.154 2.966 3.467 1.594 2.155 1.849 1.599 2.432 0.715 2.174 4.453 1.048 2.271 2.055 0.728 4.742 2.879 1.793 0.940 0.699 1.012 2.538 2.000 0.874 1.428 1.972 3.975 1.902 0.620 4.101 2.461 1.160 0.797 0.527 1442 chr3 181551076 181591915 + 0 NA Intergenic Intergenic -98657 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.206 0.107 0.700 0.260 0.466 0.029 0.161 0.073 3.042 0.743 1.002 0.276 0.037 0.339 0.171 0.317 0.040 0.061 0.054 0.037 0.272 0.136 0.038 0.273 0.104 0.052 0.030 0.421 0.169 0.325 0.072 0.210 0.235 0.274 0.050 0.231 0.223 0.031 0.171 0.060 0.028 0.024 713 chr16 18809825 18817521 + 0 NA promoter-TSS (NM_001313858) promoter-TSS (NM_001313858) -673 NM_015161 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 3.599 6.190 0.828 0.809 2.740 2.069 2.294 0.523 3.070 1.673 0.950 1.196 1.167 1.459 2.219 2.392 1.625 2.683 0.508 0.397 2.018 1.945 1.119 6.825 4.457 1.286 0.929 0.888 2.650 2.608 2.733 2.372 3.158 2.483 5.874 0.727 0.613 2.282 2.257 1.125 1.811 1.444 821 chr17 33387583 33396854 + 0 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) -1459 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 0.578 1.970 0.020 1.219 2.229 5.737 1.143 0.625 1.779 0.786 1.232 0.925 1.200 1.305 0.530 2.255 0.515 1.165 0.151 0.045 2.265 1.729 0.357 7.280 2.843 0.587 0.321 0.713 3.723 3.337 0.814 1.029 1.392 1.645 2.617 1.575 0.797 2.144 1.446 0.587 1.155 1.004 1661 chr6 33264982 33268690 + 0 NA TTS (NM_172209).2 TTS (NM_172209).2 329 NM_004761 5863 Hs.509622 NM_004761 ENSG00000237441 RGL2 HKE1.5|KE1.5|RAB2L ral guanine nucleotide dissociation stimulator like 2 protein-coding 5.855 7.024 3.501 2.449 7.017 5.361 2.617 1.990 11.935 8.769 8.710 3.210 1.902 1.954 6.039 5.257 2.975 2.178 3.562 5.950 2.987 3.835 1.630 2.658 9.938 9.325 3.453 2.143 8.933 4.039 10.138 4.274 5.256 8.917 5.444 2.252 4.598 10.074 3.276 3.302 2.839 1.456 1183 chr2 208368691 208380831 + 0 NA Intergenic Intergenic -19855 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 0.344 2.273 0.015 1.606 3.186 1.025 0.783 1.793 0.320 0.180 0.325 0.659 1.096 2.901 0.546 3.348 0.331 1.432 0.017 0.011 0.971 0.453 0.067 4.102 2.477 1.118 0.766 0.512 1.110 0.060 1.091 0.090 0.204 0.563 1.025 0.431 0.069 0.340 1.949 3.325 0.209 0.117 330 chr11 64772053 64783054 + 0 NA Intergenic AluSx|SINE|Alu -4032 NR_037650 100528018 Hs.80132 NR_037650 ENSG00000273003 ARL2-SNX15 - ARL2-SNX15 readthrough (NMD candidate) ncRNA 2.403 2.879 0.283 1.050 1.776 2.550 2.445 2.497 2.613 1.721 1.195 1.859 1.542 2.122 1.777 3.872 0.735 0.764 0.781 0.861 2.073 2.323 1.714 1.019 5.873 5.992 2.607 1.648 6.021 2.637 3.189 0.656 0.981 2.344 2.993 1.160 0.836 2.872 1.562 1.332 1.344 1.149 98 chr1 109631594 109644809 + 0 NA non-coding (NR_136242, exon 4 of 4) non-coding (NR_136242, exon 4 of 4) -4614 NR_003023 677766 Hs.550815 NR_003023 ENSG00000270066 SCARNA2 HBII-382|mgU2-25/61 small Cajal body-specific RNA 2 ncRNA 1.993 1.452 0.548 0.630 1.746 3.907 1.756 0.409 2.880 2.279 1.488 0.855 0.508 1.305 4.051 1.294 0.665 1.857 0.995 2.791 1.087 1.295 0.940 1.989 4.187 1.639 0.781 0.974 1.568 1.581 2.390 1.043 2.635 1.823 4.663 0.793 0.890 5.215 1.192 0.769 5.734 6.658 1367 chr3 14177717 14188203 + 0 NA intron (NM_024334, intron 11 of 11) intron (NM_024334, intron 11 of 11) 16520 NM_024334 79188 Hs.517817 NM_024334 ENSG00000170876 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 1.026 0.999 0.065 0.811 1.346 0.823 3.712 1.057 1.403 0.322 0.345 1.249 1.084 1.087 0.757 2.302 0.675 1.300 0.727 0.079 0.859 0.833 0.358 0.728 1.405 0.887 0.416 1.548 1.604 0.591 0.759 0.127 0.104 1.663 1.699 0.147 0.287 0.327 2.249 0.950 2.603 2.243 483 chr12 98907190 98916217 + 0 NA intron (NM_001032283, intron 1 of 8) AluSq10|SINE|Alu -1699 NR_027157 100128191 Hs.594042 NR_027157 ENSG00000257167 TMPO-AS1 - TMPO antisense RNA 1 ncRNA 6.514 4.134 3.771 0.927 3.272 4.649 3.819 1.433 5.210 2.106 2.685 1.703 2.030 1.992 3.231 3.313 1.845 2.050 1.226 3.327 3.343 3.432 3.079 5.035 4.562 4.350 1.834 1.798 6.208 4.915 3.695 1.886 3.977 4.041 5.347 2.154 1.833 5.126 2.001 2.349 3.132 2.489 1138 chr2 74196812 74260318 + 0 NA intron (NM_001287491, intron 1 of 10) MIR|SINE|MIR 15034 NM_001287491 200424 Hs.516107 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 0.664 0.596 0.329 0.406 1.017 0.365 1.407 0.410 5.815 2.340 1.858 0.547 0.314 0.689 0.831 1.265 0.752 0.512 0.087 0.316 0.570 0.389 0.438 0.592 0.602 0.558 0.310 0.673 0.369 0.894 0.688 0.462 0.856 1.633 0.912 0.484 0.815 1.008 0.313 0.222 0.200 0.149 565 chr14 37322035 37329086 + 0 NA intron (NM_030631, intron 2 of 9) intron (NM_030631, intron 2 of 9) 96036 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 0.102 0.107 0.035 0.107 0.121 0.027 0.107 0.015 38.076 12.963 2.675 0.470 0.077 0.136 0.152 0.106 4.788 0.020 0.059 0.041 0.010 0.076 0.067 0.033 0.498 0.154 0.127 0.031 0.033 1.711 0.172 0.077 1.220 0.424 0.050 0.123 0.011 0.016 438 chr12 50782339 50796931 + 0 NA intron (NM_001145475, intron 1 of 7) AluSp|SINE|Alu 770 NM_001145475 121006 Hs.133187 NM_001145475 ENSG00000185958 FAM186A - family with sequence similarity 186 member A protein-coding 1.635 1.354 1.344 0.937 2.149 0.942 1.178 1.636 2.404 1.290 1.202 0.652 0.529 1.391 1.810 1.725 0.433 0.966 0.302 0.451 2.082 1.192 0.943 1.314 4.286 5.364 2.475 0.835 1.329 1.303 1.382 0.929 1.457 1.316 1.206 0.477 0.710 1.299 1.946 0.501 0.891 0.593 1578 chr5 134359533 134376034 + 0 NA intron (NM_002653, intron 1 of 2) intron (NM_002653, intron 1 of 2) -1187 NM_001277348 100996485 NM_001277348 C5orf66 - chromosome 5 open reading frame 66 protein-coding 0.218 0.784 0.013 0.412 0.972 0.062 0.932 0.473 2.490 1.278 0.284 0.473 0.420 2.873 1.524 1.685 0.404 0.867 0.857 0.218 2.898 3.503 1.371 2.170 0.180 1.417 0.738 0.371 2.579 1.612 0.384 1.109 2.357 0.406 1.643 1.620 0.607 0.543 0.780 0.568 0.883 0.606 1093 chr19 57789608 57793985 + 0 NA promoter-TSS (NR_136529) promoter-TSS (NR_136529) -57 NM_006635 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 5.094 4.637 1.610 1.182 2.484 3.162 4.027 1.460 6.001 4.962 4.851 1.790 2.510 7.528 5.466 2.531 1.927 4.138 1.900 1.618 1.570 2.031 2.344 2.440 5.372 2.370 1.143 3.126 2.678 4.228 3.042 3.547 1.406 4.807 2.662 2.352 1.754 3.193 3.783 1.750 2.302 1.439 1881 chr8 102446244 102487780 + 0 NA Intergenic Intergenic -37655 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.411 0.309 3.165 0.315 0.559 1.385 0.233 0.871 2.982 0.808 2.332 1.452 0.541 0.155 2.350 2.843 1.199 1.436 0.063 0.017 0.727 0.290 0.238 1.627 1.337 0.119 0.068 0.621 0.481 0.835 0.164 0.302 1.451 1.241 1.161 0.514 1.869 1.009 1.309 1.373 0.058 0.032 254 chr10 64132777 64148853 + 0 NA intron (NM_199451, intron 2 of 7) intron (NM_199451, intron 2 of 7) -5929 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 1.950 0.830 0.023 0.926 1.105 0.098 0.156 0.013 0.914 0.344 0.287 0.633 0.567 0.034 0.617 0.628 0.434 3.430 0.055 0.017 1.357 0.760 0.023 0.735 0.183 0.094 0.048 0.243 0.888 0.198 0.289 0.088 0.169 1.136 0.098 0.175 0.903 0.349 1.599 0.644 0.691 0.912 1401 chr3 128897175 128906519 + 0 NA intron (NM_001127192, intron 1 of 4) AluSx3|SINE|Alu 963 NM_001127194 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 5.119 2.440 0.476 0.701 2.290 1.741 4.269 1.451 5.712 3.800 3.119 1.300 1.031 2.208 2.375 4.336 1.460 2.180 1.386 2.192 3.510 4.530 1.582 3.015 4.032 3.022 1.361 1.637 3.015 2.025 4.106 2.069 3.774 2.990 6.290 1.439 1.478 4.013 2.840 1.295 1.510 0.937 1858 chr8 67834748 67839723 + 0 NA intron (NR_002599, intron 1 of 3) intron (NR_002599, intron 1 of 3) 542 NR_002599 641638 Hs.372680 NR_002599 SNHG6 HBII-276HG|NCRNA00058|U87HG small nucleolar RNA host gene 6 ncRNA 1.672 3.225 0.997 2.196 4.907 2.491 4.072 1.532 4.961 2.833 1.514 2.286 1.527 2.194 2.641 4.634 0.961 2.561 0.838 1.369 2.171 1.671 1.831 4.371 3.613 5.815 3.108 5.457 4.349 3.321 8.941 2.848 1.505 3.999 6.154 2.001 1.048 2.979 3.915 1.054 3.160 2.617 469 chr12 66015321 66093162 + 0 NA Intergenic Intergenic -18089 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 1.602 0.742 0.135 0.880 1.138 1.248 1.154 2.855 3.904 2.185 1.104 1.723 2.831 1.645 0.614 3.106 0.023 5.061 0.066 0.255 0.658 0.250 0.014 0.244 1.401 0.573 0.366 0.923 3.400 0.146 1.542 0.067 0.300 0.510 2.325 0.209 0.182 0.560 0.442 0.968 0.953 1.173 842 chr17 38253317 38282003 + 0 NA Intergenic Intergenic -10682 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 13.224 4.410 4.893 0.977 2.674 3.734 2.273 1.361 4.619 2.344 2.709 1.482 1.779 2.083 1.768 2.292 1.089 1.508 1.056 1.837 2.068 1.984 1.777 3.588 3.000 1.614 0.715 1.216 3.767 3.892 1.773 3.210 3.036 3.321 2.223 1.461 1.653 3.723 1.617 2.433 1.171 0.860 1055 chr19 45922212 45934859 + 0 NA Intergenic L2a|LINE|L2 -1358 NM_001983 2067 Hs.435981 NM_001983 ENSG00000012061 ERCC1 COFS4|RAD10|UV20 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding 3.440 2.698 0.364 0.836 2.335 3.437 2.556 1.264 nan 2.217 2.513 1.214 1.855 1.429 2.719 3.402 1.322 3.238 0.873 0.831 1.921 1.937 0.676 1.867 5.027 4.866 1.739 0.847 4.075 3.110 10.832 2.708 1.737 2.879 1.303 1.419 1.469 3.425 0.546 1.762 3.174 3.058 1755 chr7 55051878 55065911 + 0 NA Intergenic Intergenic -27820 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 0.873 0.460 0.040 0.632 0.928 1.109 1.709 1.079 3.062 1.380 4.876 0.793 0.605 1.561 4.031 2.357 0.511 1.189 0.078 0.020 1.916 1.003 0.042 0.096 3.144 0.649 0.378 4.037 0.463 0.666 0.066 1.461 1.248 0.244 3.069 0.540 1.334 0.647 1.787 1.658 0.148 0.169 396 chr12 6419018 6456173 + 0 NA TTS (NM_001144857) TTS (NM_001144857) 13688 NR_144351 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 2.392 2.027 0.480 1.300 2.929 1.827 4.106 1.805 7.428 3.908 3.950 0.936 1.236 1.920 2.666 2.549 1.262 2.231 0.685 0.254 2.382 2.590 0.805 4.550 3.269 2.588 0.951 2.698 5.423 6.260 4.714 1.236 2.340 2.625 2.990 1.339 2.309 4.931 1.593 0.908 2.469 1.743 1751 chr7 36318675 36324962 + 0 NA intron (NM_030636, intron 4 of 7) intron (NM_030636, intron 4 of 7) 84964 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 3.138 0.562 0.812 0.575 0.091 1.978 1.163 1.143 0.306 0.584 0.958 0.902 1.206 2.156 1.503 0.076 2.257 0.461 0.044 2.568 1.626 0.081 0.698 0.336 0.284 0.099 1.003 10.953 1.062 0.147 3.131 1.620 0.457 2.013 0.777 0.065 0.101 2.150 1.194 0.513 0.745 953 chr18 46514880 46525808 + 0 NA Intergenic Intergenic -43263 NM_001190821 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 1.024 2.129 0.074 0.712 0.880 0.119 0.508 0.869 3.149 1.319 0.459 2.286 0.703 1.838 2.871 2.340 1.381 2.922 0.119 0.088 1.691 0.974 0.568 0.912 2.424 2.278 0.992 0.896 1.531 1.856 1.392 0.809 2.205 2.020 0.625 0.536 1.002 0.920 2.284 0.732 0.992 0.790 1577 chr5 133886355 133892894 + 0 NA intron (NM_015288, intron 4 of 10) intron (NM_015288, intron 4 of 10) 27826 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 1.705 2.377 0.312 1.018 1.329 3.585 0.214 0.242 0.391 0.161 0.097 0.201 0.395 0.798 0.237 3.333 0.087 2.919 0.120 0.170 0.405 0.252 3.236 1.912 3.903 7.754 2.834 0.261 0.492 2.087 4.315 0.085 0.204 0.336 2.313 0.197 0.581 2.579 0.798 1.621 6.448 4.411 238 chr10 25232718 25253153 + 0 NA Intergenic Intergenic -1362 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 1.368 1.996 0.103 0.531 0.674 0.867 1.021 0.453 0.527 0.194 0.189 0.426 1.358 0.553 0.557 1.371 0.861 3.578 0.035 0.508 1.155 0.956 0.613 2.374 0.130 0.632 0.321 0.341 1.485 1.078 1.186 1.645 2.219 0.445 0.163 1.987 0.251 1.109 1.726 1.419 1.011 0.674 1725 chr7 4721050 4725422 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 1306 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 5.949 4.746 0.414 0.863 3.808 2.885 8.886 1.415 10.896 6.676 8.234 1.377 1.503 1.569 4.138 2.818 2.160 3.317 1.415 1.588 2.956 4.141 2.553 3.238 5.500 4.658 2.051 3.100 2.770 6.987 6.351 3.575 3.474 4.382 5.364 2.917 2.439 5.770 2.898 2.784 1.541 0.963 1530 chr5 34582460 34590085 + 0 NA Intergenic Intergenic -70161 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 0.897 1.576 0.025 3.654 6.773 0.199 3.881 3.091 11.844 6.053 10.467 4.348 1.796 2.901 10.194 5.172 0.025 2.305 0.013 0.019 1.561 0.788 0.068 1.580 1.038 1.950 1.286 3.431 2.090 1.360 0.138 2.676 5.252 2.384 0.110 3.207 2.008 0.354 0.264 1.774 0.083 0.013 618 chr14 103850861 103867131 + 0 NA intron (NM_001128920, intron 1 of 15) intron (NM_001128920, intron 1 of 15) 7295 NM_001128919 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a microtubule affinity regulating kinase 3 protein-coding 1.572 0.992 0.208 0.173 0.715 0.865 1.091 0.551 2.333 1.753 1.436 0.697 0.373 0.478 3.469 0.968 0.499 0.729 0.258 0.390 1.479 1.056 0.372 0.898 1.055 1.202 0.685 0.551 0.927 1.272 3.221 0.452 1.624 0.741 0.922 0.512 0.660 0.989 1.226 2.182 0.312 0.272 49 chr1 36609677 36631167 + 0 NA intron (NM_001270895, intron 1 of 4) MIR|SINE|MIR -1144 NM_018067 55700 Hs.356096 NM_018067 ENSG00000116871 MAP7D1 PARCC1|RPRC1 MAP7 domain containing 1 protein-coding 3.957 3.504 1.474 1.076 2.746 3.519 3.081 1.391 3.699 1.678 1.898 1.294 0.921 1.929 2.057 3.836 1.617 2.259 1.116 1.703 1.846 2.236 2.310 2.605 6.341 2.501 1.053 0.768 5.189 2.451 3.696 0.997 1.081 3.484 2.652 0.931 1.280 4.264 1.086 2.252 2.129 1.630 1319 chr22 19860450 19874043 + 0 NA intron (NM_006440, intron 14 of 17) intron (NM_006440, intron 14 of 17) -24784 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 1.056 1.911 2.244 0.252 0.578 2.520 0.159 0.442 nan 0.184 0.429 0.526 0.252 0.102 0.163 0.619 0.394 1.131 0.081 0.020 0.072 0.026 8.657 1.882 2.417 3.565 1.200 0.372 2.288 1.120 0.636 0.041 0.200 1.989 1.083 0.171 0.925 3.625 1.431 1.298 2.491 1.566 686 chr16 2071634 2105947 + 0 NA 3' UTR (NM_001130012, exon 7 of 7) 3' UTR (NM_001130012, exon 7 of 7) 5525 NM_001252076 9351 Hs.440896 NM_004785 ENSG00000065054 SLC9A3R2 E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1 SLC9A3 regulator 2 protein-coding 2.474 3.559 0.114 0.826 2.035 0.288 2.674 0.560 13.225 8.029 1.519 1.815 1.144 1.548 0.781 3.604 0.218 0.550 1.473 0.157 1.630 1.907 0.685 0.585 2.363 0.438 0.258 2.757 0.385 3.258 0.704 0.519 2.851 3.470 1.792 0.581 0.774 1.091 0.852 2.634 0.161 0.072 176 chr1 158968499 158992634 + 0 NA intron (NM_001206567, intron 1 of 10) intron (NM_001206567, intron 1 of 10) 884 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 0.270 0.385 0.008 0.524 1.243 0.107 2.384 1.095 0.330 0.299 2.525 0.701 1.792 3.421 0.060 0.807 0.091 1.562 0.087 3.992 3.250 0.023 1.131 0.760 0.690 0.384 0.812 1.364 0.135 0.035 1.170 0.628 0.301 0.721 0.391 0.072 0.102 2.320 0.635 0.026 0.036 1772 chr7 73683974 73695859 + 0 NA Intergenic Intergenic -13889 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 0.592 1.873 0.052 0.470 0.597 0.852 1.362 1.307 0.876 0.352 0.542 0.649 1.170 0.619 0.713 3.171 0.646 2.569 0.136 0.093 0.806 0.485 1.666 3.036 3.926 2.054 0.927 1.649 8.029 1.775 2.458 1.781 1.467 2.652 3.284 0.630 0.824 2.697 3.002 2.684 0.780 0.700 560 chr14 35786965 35877245 + 0 NA Intergenic Intergenic 41855 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 0.804 1.217 3.591 1.398 2.744 0.629 1.435 1.562 22.816 7.172 2.781 0.824 0.586 2.361 1.093 3.427 0.722 0.680 0.394 0.233 1.285 0.922 0.249 2.467 2.207 0.825 0.408 1.406 1.116 3.779 0.687 1.373 2.202 2.036 0.956 1.065 1.076 1.069 0.952 0.344 0.154 0.121 1119 chr2 33140993 33141975 + 0 NA intron (NR_027099, intron 5 of 5) (G)n|Simple_repeat|Simple_repeat -10710 NR_027097 100271832 Hs.743603 NR_027097 LOC100271832 - uncharacterized LOC100271832 ncRNA 0.070 nan 0.020 0.113 1.045 1.465 0.555 0.807 4.787 0.770 1.031 2.127 0.808 1.968 1.166 1.107 0.781 0.880 0.248 0.291 0.163 0.401 0.188 0.166 0.468 0.636 0.769 0.469 0.364 933 chr17 80476470 80495443 + 0 NA intron (NM_004514, intron 1 of 8) AluJr|SINE|Alu 8362 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 0.890 1.571 1.393 0.628 2.393 0.364 1.118 0.283 nan 2.114 1.400 0.812 0.680 0.642 0.645 1.943 0.786 0.567 0.378 0.520 0.980 0.844 0.787 1.154 1.173 0.643 0.361 0.567 0.808 1.604 1.870 0.553 1.289 3.717 2.157 0.439 0.502 1.318 0.950 0.452 0.230 0.131 517 chr13 27936067 27950009 + 0 NA Intergenic Intergenic -55643 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 0.057 0.105 0.019 0.068 0.174 0.037 0.055 0.188 1.257 0.252 0.090 0.032 0.059 0.164 0.145 0.276 0.014 0.061 4.206 0.020 0.106 0.067 0.067 0.129 0.163 0.110 0.101 0.039 0.284 0.429 0.105 0.363 0.342 0.040 0.198 0.299 0.118 0.323 0.074 0.033 0.025 0.022 355 chr11 67440404 67452224 + 0 NA intron (NM_001031615, intron 1 of 9) L1PB1|LINE|L1 2371 NM_001031615 222 Hs.87539 NM_000695 ENSG00000132746 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family member B2 protein-coding 0.347 0.105 0.610 0.529 1.277 0.010 0.080 0.170 6.653 1.474 2.175 0.990 0.005 0.304 2.087 0.707 1.138 0.263 0.068 0.035 0.042 0.037 0.083 0.163 0.061 0.026 0.434 0.193 0.096 0.036 0.073 4.159 0.648 0.047 1.001 2.345 0.233 0.133 0.026 0.010 0.017 392 chr11 129866069 129875515 + 0 NA intron (NM_020228, intron 1 of 21) AluJb|SINE|Alu -1727 NR_024233 440072 Hs.630600 NM_001007543 LINC00167 C11orf37|NCRNA00167 long intergenic non-protein coding RNA 167 ncRNA 2.006 3.867 3.140 0.984 2.824 4.628 4.437 1.851 5.899 4.384 2.513 2.006 2.299 2.875 4.740 4.044 1.925 2.538 1.760 1.778 2.692 3.734 2.473 3.428 11.631 6.493 2.544 3.810 6.046 2.810 5.033 1.870 4.741 4.310 6.729 2.759 4.028 3.977 3.407 4.081 3.262 2.890 366 chr11 75074091 75100756 + 0 NA Intergenic Intergenic -23112 NM_001256802 6188 Hs.546286 NM_001005 ENSG00000149273 RPS3 S3 ribosomal protein S3 protein-coding 0.132 0.202 0.501 0.291 0.498 0.223 0.321 0.639 nan 0.801 1.195 0.676 0.163 0.752 1.302 1.333 0.334 0.190 0.338 0.073 0.699 0.375 0.125 0.472 0.704 0.317 0.189 0.961 0.298 1.047 0.092 0.556 2.660 0.726 4.070 0.201 3.716 0.425 0.513 0.100 0.043 0.036 679 chr16 430470 434998 + 0 NA promoter-TSS (NM_021259) promoter-TSS (NM_021259) 493 NR_024453 100134368 Hs.621241 NR_024453 ENSG00000236829 LOC100134368 - uncharacterized LOC100134368 ncRNA 5.572 2.952 0.219 1.005 4.293 1.240 5.335 0.649 11.026 5.633 2.528 0.470 0.485 2.618 1.359 2.086 0.754 1.138 2.787 1.345 1.279 0.733 2.940 1.240 2.074 2.513 1.753 0.796 0.464 3.375 3.132 9.224 3.227 3.834 1.161 1.164 2.138 2.163 0.642 0.807 0.521 0.330 1869 chr8 81397159 81400611 + 0 NA 5' UTR (NM_023929, exon 1 of 7) 5' UTR (NM_023929, exon 1 of 7) 437 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 2.036 4.967 3.770 1.465 6.420 2.872 6.371 1.663 9.131 6.335 4.953 1.981 2.741 1.822 1.769 3.353 1.531 2.008 1.537 3.190 3.142 3.824 2.664 1.323 5.942 5.549 2.860 8.982 3.344 5.376 14.050 3.693 2.358 10.889 6.800 1.100 3.134 4.657 5.123 0.838 2.286 1.591 834 chr17 37018039 37063663 + 0 NA intron (NM_001271608, intron 2 of 5) AluSq|SINE|Alu 14739 NM_001271608 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 4.019 4.296 0.799 0.801 1.815 4.046 1.102 0.865 0.838 0.516 0.905 0.695 1.075 1.235 1.838 2.621 1.096 0.583 0.449 0.493 1.303 1.070 1.894 1.381 5.055 2.139 0.863 0.845 3.237 2.488 1.097 0.339 0.816 1.460 0.961 0.542 0.713 2.095 1.155 2.032 1.791 0.952 1123 chr2 43263258 43270214 + 0 NA promoter-TSS (NR_110585) promoter-TSS (NR_110585) -54 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 0.739 0.860 0.883 1.227 0.037 0.122 0.597 nan 0.542 0.153 0.475 1.985 0.109 9.053 2.711 1.826 0.915 0.085 0.044 0.289 0.136 0.088 0.055 3.688 0.514 0.358 0.586 3.320 0.703 1.385 0.022 0.200 0.754 0.169 0.070 2.376 0.409 1.213 0.919 0.182 0.066 727 chr16 30750383 30760689 + 0 NA 3' UTR (NM_001256829, exon 3 of 3) 3' UTR (NM_001256829, exon 3 of 3) 4024 NM_001256829 100862671 Hs.667372 NM_001256829 ENSG00000281991 TMEM265 IFITMD8 transmembrane protein 265 protein-coding 3.564 2.234 1.697 0.772 2.172 1.195 2.101 0.881 3.139 1.865 2.196 0.779 0.394 1.895 1.933 1.466 0.762 0.544 0.711 0.306 1.013 0.874 0.971 0.746 2.089 1.610 0.597 1.946 0.832 1.738 2.810 0.484 2.339 3.481 1.102 0.748 1.091 1.326 1.121 0.733 0.827 0.549 135 chr1 152160760 152165202 + 0 NA Intergenic L2a|LINE|L2 -31277 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 0.347 0.284 0.251 0.215 0.693 1.159 0.106 0.167 13.315 12.926 1.327 0.033 0.931 0.296 0.131 0.407 0.108 0.893 0.066 0.154 0.081 0.047 0.264 1.533 0.041 0.052 0.086 0.701 1.045 0.110 2.490 0.835 0.142 0.729 0.220 0.505 4.141 0.903 0.172 0.052 0.056 233 chr10 21780591 21786994 + 0 NA 3' UTR (NM_001010911, exon 2 of 2) 3' UTR (NM_001010911, exon 2 of 2) 1778 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 1.045 2.988 0.214 0.325 1.060 10.309 2.172 0.406 0.587 0.672 1.473 0.683 0.920 0.511 2.270 0.908 2.035 2.248 0.297 4.725 1.259 1.241 2.720 2.158 2.415 1.903 1.021 0.276 1.670 7.018 3.125 1.306 2.688 1.327 1.995 0.554 1.435 12.916 2.998 1.039 3.535 1.781 126 chr1 151318112 151326063 + 0 NA Intergenic AluJb|SINE|Alu -2318 NM_000449 5993 Hs.632472 NM_000449 ENSG00000143390 RFX5 - regulatory factor X5 protein-coding 1.042 1.254 0.617 1.550 1.979 1.724 0.716 1.127 9.898 4.289 0.648 1.393 1.136 1.097 0.669 2.442 0.419 1.563 0.808 0.488 1.538 1.155 0.952 1.546 1.536 1.143 0.540 0.299 0.970 1.270 1.528 1.777 2.291 4.647 1.861 0.703 0.945 2.728 2.291 0.844 0.572 0.396 648 chr15 71144397 71167758 + 0 NA intron (NM_001284357, intron 1 of 16) LTR88b|LTR|Gypsy? -9473 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 0.491 0.822 0.080 0.170 0.180 0.205 0.099 0.412 1.076 0.786 0.225 0.594 0.793 0.079 0.264 0.701 0.110 3.613 0.039 0.220 0.466 0.183 0.278 0.385 0.493 0.270 0.230 0.165 1.892 0.911 1.489 0.243 0.259 0.315 0.178 0.105 0.162 0.545 0.822 0.711 0.363 0.225 1600 chr5 172134207 172145629 + 0 NA Intergenic L2c|LINE|L2 -42588 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 0.301 0.300 0.049 0.183 0.176 3.390 0.210 0.378 1.127 0.348 0.217 0.115 0.207 0.468 0.210 0.385 0.269 0.236 0.226 0.049 0.448 0.151 0.710 0.788 1.214 0.283 0.164 0.084 0.490 1.319 0.503 3.563 1.449 0.405 1.025 0.746 1.878 0.781 0.097 0.085 0.172 0.114 477 chr12 89545281 89676299 + 0 NA Intergenic Intergenic 135846 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 0.259 0.219 0.072 0.292 0.361 0.087 0.654 0.525 5.421 2.556 2.252 0.436 0.420 0.458 0.553 0.600 0.078 0.130 0.130 0.271 0.451 0.186 0.035 0.233 0.255 0.051 0.041 0.201 0.387 0.288 0.194 0.272 0.892 0.298 0.135 0.412 0.203 0.196 0.095 0.097 0.027 0.033 817 chr17 29024379 29041802 + 0 NA Intergenic CpG -3536 NR_024187 440423 Hs.628886 NR_024187 SUZ12P1 SUZ12P SUZ12 polycomb repressive complex 2 subunit pseudogene 1 pseudo 0.875 2.111 0.816 0.560 2.595 0.277 1.063 0.401 4.670 2.164 1.982 0.513 0.495 0.734 0.829 1.074 0.685 0.337 0.482 1.464 0.893 0.531 1.082 0.885 0.900 0.588 0.315 0.904 0.988 2.481 1.292 0.797 0.765 3.722 0.444 0.435 0.450 2.139 0.654 0.489 0.364 0.135 1697 chr6 106227569 106268354 + 0 NA Intergenic Intergenic -286234 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 0.286 0.092 0.014 0.521 0.745 0.110 0.140 0.433 4.262 0.538 0.374 0.502 0.182 0.809 1.120 0.447 0.171 1.034 0.022 0.017 1.059 0.568 0.031 0.336 0.194 0.126 0.101 0.259 0.287 0.531 0.415 0.124 0.855 0.242 0.111 0.448 0.221 0.148 0.212 0.130 0.035 0.025 527 chr13 73699988 73720308 + 0 NA Intergenic AluSq2|SINE|Alu 77218 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 1.138 0.641 1.513 0.103 0.254 1.706 0.214 0.755 6.209 2.384 1.282 0.606 0.123 0.874 1.761 0.868 0.248 0.593 0.059 0.007 1.165 0.851 0.069 0.063 0.159 0.116 0.119 1.063 0.176 1.046 0.088 0.831 0.869 0.422 0.023 1.288 0.485 0.215 0.125 0.449 0.017 0.003 1208 chr20 270254 282519 + 0 NA Intergenic L1M5|LINE|L1 -1818 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 1.609 3.767 0.734 0.433 1.904 1.239 0.847 0.798 4.454 3.312 2.258 1.055 0.480 0.939 1.970 0.560 0.816 1.344 1.344 3.374 1.042 1.274 1.420 2.053 1.899 2.363 1.172 1.179 1.958 3.832 3.798 1.333 2.072 2.296 2.114 1.055 1.870 2.699 1.653 1.396 1.179 0.704 924 chr17 78826629 78836388 + 0 NA intron (NM_001163034, intron 12 of 29) CpG -52076 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 1.705 4.212 0.115 1.087 1.687 2.803 2.177 0.916 1.799 0.481 0.469 2.598 1.902 1.894 0.464 5.334 0.528 2.275 0.915 0.033 2.407 2.270 0.681 1.290 6.785 1.181 0.473 1.083 7.494 0.735 2.495 0.916 2.436 1.682 1.393 0.263 1.415 2.245 1.415 4.415 1.474 1.261 1677 chr6 42279661 42291838 + 0 NA intron (NM_033502, intron 3 of 17) AluSx1|SINE|Alu -100116 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 1.177 0.824 0.010 0.775 1.843 1.367 0.605 2.131 0.793 0.341 0.260 1.055 0.845 0.528 1.255 5.084 0.392 1.945 0.050 0.057 2.637 2.121 0.411 0.186 0.922 2.252 1.115 1.122 4.981 0.976 1.673 1.497 1.308 2.298 5.176 0.579 0.688 0.124 2.434 1.601 2.223 1.931 580 chr14 61976425 62088409 + 0 NA intron (NR_110417, intron 1 of 3) AluSz6|SINE|Alu 4495 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 1.914 2.001 0.653 0.922 2.165 0.853 1.724 2.019 3.946 2.098 2.935 2.060 1.596 2.977 1.894 2.637 0.554 2.755 0.158 0.012 4.465 3.699 0.041 2.335 1.417 1.003 0.466 1.511 1.528 1.395 0.415 1.930 3.755 1.929 1.938 1.746 0.320 0.248 2.439 3.068 0.834 0.644 1764 chr7 64014507 64024269 + 0 NA intron (NM_001130022, intron 1 of 3) MER4C|LTR|ERV1 4117 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 0.354 0.736 4.058 0.725 1.504 2.256 0.866 0.256 3.583 2.479 3.002 0.926 0.271 0.391 0.475 2.594 0.237 0.806 0.196 0.402 1.090 0.939 0.042 0.371 0.772 0.567 0.318 1.170 2.419 0.508 2.184 0.476 0.113 1.880 0.598 0.490 0.677 0.350 2.114 0.500 2.291 1.777 1874 chr8 86088091 86091861 + 0 NA promoter-TSS (NR_134311) promoter-TSS (NR_134311) 357 NM_001083588 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 2.552 2.888 1.722 1.104 3.784 4.168 3.068 1.062 2.569 2.941 2.240 1.654 1.347 1.731 3.418 3.239 0.636 2.167 1.780 4.825 1.820 2.187 3.601 2.995 4.715 5.446 2.240 0.822 1.984 4.990 11.874 2.372 1.818 6.024 4.789 1.420 2.145 2.438 1.838 0.962 1.497 0.890 833 chr17 36902417 36910387 + 0 NA Intergenic Intergenic -1844 NM_007144 7703 Hs.371617 NM_007144 ENSG00000277258 PCGF2 MEL-18|RNF110|ZNF144 polycomb group ring finger 2 protein-coding 14.915 7.332 0.910 1.683 4.582 11.467 3.821 2.452 5.506 4.118 4.972 3.215 3.154 4.462 5.128 3.840 4.023 2.198 2.322 8.998 3.522 3.361 3.996 6.504 9.138 6.329 2.705 1.743 4.890 8.073 4.821 4.196 3.742 3.889 4.258 3.271 3.346 10.698 2.934 3.127 4.148 2.582 1148 chr2 100474287 100485971 + 0 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 241916 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 0.037 0.108 0.022 0.016 0.087 0.070 0.092 0.036 0.121 0.056 0.109 0.039 0.161 0.019 0.124 0.038 0.122 0.026 0.024 0.012 0.034 0.310 0.065 8.337 0.191 0.147 0.026 6.819 0.095 0.054 0.027 0.039 0.037 0.052 0.070 0.771 0.047 1.239 5.803 7.980 278 chr10 126770313 126775776 + 0 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -51605 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 0.535 1.820 0.011 0.662 2.553 0.484 1.027 0.718 5.844 2.610 0.921 0.989 0.929 1.502 0.106 3.621 0.806 1.570 0.037 0.051 1.835 1.434 0.175 2.083 0.876 0.584 0.343 0.989 1.034 2.106 2.041 1.813 0.760 7.050 3.115 1.246 0.137 0.721 1.580 0.487 0.242 0.208 1417 chr3 160164780 160170004 + 0 NA intron (NM_173084, intron 1 of 2) CpG 234 NM_173084 286827 Hs.212957 NM_173084 ENSG00000213186 TRIM59 IFT80L|MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 2.589 2.237 2.538 1.123 2.125 0.359 8.078 2.867 2.195 0.946 1.241 1.632 0.991 1.126 1.288 2.321 0.683 1.496 0.266 1.255 1.342 0.632 2.132 3.558 1.951 0.994 0.621 0.935 2.369 3.978 1.074 2.332 2.056 3.736 0.615 0.458 2.272 2.870 0.206 1.091 0.774 1321 chr22 19946160 19953072 + 0 NA promoter-TSS (NM_007310) promoter-TSS (NM_007310) -454 NM_007310 1312 Hs.370408 NM_000754 ENSG00000093010 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 3.303 1.102 8.693 1.705 4.044 0.304 1.955 1.313 nan 3.335 6.882 1.906 0.324 1.061 1.721 0.958 1.588 0.111 0.057 0.060 0.296 0.094 0.623 0.156 0.809 0.148 0.135 1.976 0.073 0.212 3.085 0.562 4.017 3.506 0.159 1.168 4.083 1.073 0.582 0.089 0.108 0.140 19 chr1 14082310 14090245 + 0 NA intron (NM_001135610, intron 6 of 7) intron (NM_001135610, intron 6 of 7) 10401 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 1.144 0.156 4.483 0.604 1.496 0.040 0.774 0.738 1.608 1.167 1.975 0.368 0.088 0.401 1.338 1.076 0.771 0.222 0.075 0.054 0.227 0.046 0.056 0.178 0.058 0.038 0.029 0.438 0.089 0.092 0.130 0.056 0.971 1.383 0.094 0.525 1.328 0.037 0.100 0.057 0.015 0.013 978 chr19 3556369 3566664 + 0 NA Intergenic AluJr|SINE|Alu -3934 NM_174983 126321 Hs.656901 NM_021731 ENSG00000161091 MFSD12 C19orf28|PP3501 major facilitator superfamily domain containing 12 protein-coding 0.955 1.150 0.416 1.123 2.425 3.917 0.930 0.368 1.483 0.727 0.540 0.492 0.294 0.621 1.384 2.512 0.741 1.349 0.312 0.206 2.185 1.775 1.479 3.692 7.123 1.850 0.998 1.010 1.762 2.161 1.687 1.858 1.547 4.611 1.754 0.759 1.592 3.025 4.438 1.334 3.960 2.896 406 chr12 9797551 9804844 + 0 NA non-coding (NR_002814, exon 1 of 4) non-coding (NR_002814, exon 1 of 4) 554 NR_046445 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 2.659 0.726 0.958 1.558 3.447 0.337 5.765 2.475 7.322 3.458 7.128 1.541 1.560 2.824 6.110 2.806 1.613 4.297 0.302 0.514 1.995 1.790 0.507 0.710 3.486 1.993 0.951 2.658 12.927 2.076 3.721 0.529 3.124 2.282 2.615 1.513 1.725 2.706 0.944 1.278 0.758 0.294 1051 chr19 45219707 45289336 + 0 NA exon (NM_005178, exon 2 of 9) exon (NM_005178, exon 2 of 9) 2543 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 B-cell CLL/lymphoma 3 protein-coding 1.666 3.231 0.091 1.183 2.500 2.306 1.174 0.637 nan 1.365 1.904 0.810 0.883 1.609 2.271 1.356 1.741 3.299 0.804 0.092 2.178 1.896 0.791 2.267 3.304 1.174 0.466 0.729 0.982 5.574 3.687 2.147 1.772 2.000 1.442 1.428 1.612 2.497 2.256 1.055 0.282 0.171 738 chr16 57218206 57235393 + 0 NA intron (NM_001305163, intron 1 of 14) AluJb|SINE|Alu 6603 NM_133368 89970 Hs.460885 NM_133368 ENSG00000159579 RSPRY1 SEMDFA ring finger and SPRY domain containing 1 protein-coding 1.724 2.962 0.481 0.507 1.576 5.821 2.209 0.799 2.090 1.277 1.486 1.634 1.049 2.767 1.434 3.349 0.886 1.431 1.253 0.582 2.125 1.764 1.485 2.377 2.829 5.511 2.385 1.719 1.982 1.533 2.037 1.014 1.407 2.772 5.689 0.343 0.598 1.225 2.564 1.403 1.545 1.262 1969 chr9 127413760 127438200 + 0 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 5265 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 3.294 0.146 1.648 0.441 1.680 0.197 3.092 0.911 1.760 1.862 1.458 0.827 0.416 1.134 1.925 1.114 0.872 1.150 0.025 0.408 1.127 0.936 0.530 1.546 2.493 0.854 0.398 1.537 1.702 0.520 0.899 0.438 0.844 1.523 1.252 0.212 0.435 0.680 1.553 0.755 0.643 0.513 1342 chr22 38558466 38590948 + 0 NA intron (NM_001199562, intron 1 of 15) AluSz|SINE|Alu 3054 NM_001004426 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 1.486 0.714 0.791 0.333 0.690 0.671 0.553 0.368 4.310 1.078 0.849 0.244 0.319 0.349 1.710 0.658 0.620 0.749 0.385 0.214 0.419 0.250 0.448 0.442 1.870 0.857 0.392 0.391 0.591 1.243 0.958 0.560 0.957 1.181 0.872 0.299 0.958 0.987 0.806 0.286 0.262 0.171 1155 chr2 102128753 102139003 + 0 NA Intergenic Intergenic -42713 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 1.881 1.859 0.036 1.888 2.891 0.665 2.797 1.914 4.453 1.550 0.694 2.587 5.371 3.542 2.490 6.257 0.122 4.372 0.021 3.251 3.045 0.072 0.129 3.035 1.253 0.648 1.830 12.071 0.778 1.293 0.233 2.660 0.765 1.719 1.275 1.252 0.170 1.513 5.661 0.815 1.201 846 chr17 38567865 38577173 + 0 NA intron (NM_001067, intron 3 of 34) intron (NM_001067, intron 3 of 34) 1683 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A topoisomerase (DNA) II alpha protein-coding 12.521 3.188 0.592 0.937 2.991 3.555 3.721 1.368 3.112 0.977 3.196 1.116 1.958 2.300 1.149 2.856 0.616 0.626 0.821 0.732 2.888 3.146 1.040 2.667 3.027 1.405 0.620 1.800 2.494 3.180 1.349 1.397 1.444 4.300 2.245 0.973 0.550 2.902 1.404 1.249 1.250 0.870 1686 chr6 45663370 45683848 + 0 NA Intergenic Intergenic 231725 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 0.178 2.584 0.031 0.463 0.520 0.064 0.095 1.030 1.897 0.452 0.567 1.412 0.552 0.257 0.508 2.328 0.055 3.177 0.032 0.061 0.307 0.081 0.019 0.653 0.121 0.637 0.192 0.259 1.621 0.068 0.249 0.564 0.261 0.347 0.051 0.300 0.073 0.136 0.924 1.816 0.127 0.128 954 chr18 51776801 51788689 + 0 NA Intergenic Intergenic -13104 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding 0.183 0.169 0.099 0.063 0.134 0.093 0.046 0.062 0.292 0.080 0.966 0.367 0.039 0.162 4.986 0.273 1.490 0.123 0.092 0.012 0.052 0.006 0.043 1.358 0.099 0.026 0.039 0.321 0.050 0.377 0.120 0.159 0.966 0.091 0.055 0.825 0.294 0.069 0.081 0.038 0.034 0.013 1235 chr20 33288112 33299081 + 0 NA intron (NM_001329429, intron 2 of 4) intron (NM_001329429, intron 2 of 4) 1050 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 1.455 1.526 0.431 0.673 1.561 2.748 0.676 0.442 nan 2.437 2.517 0.864 0.626 0.408 0.494 0.447 0.756 1.431 2.029 0.796 0.749 0.411 0.980 0.794 2.151 0.758 0.539 0.511 0.781 1.789 4.421 2.589 2.158 5.223 1.137 0.705 2.274 4.178 0.603 1.171 0.483 0.199 721 chr16 30102066 30108480 + 0 NA intron (NM_031477, intron 3 of 3) MIRc|SINE|MIR -2068 NM_004608 6911 Hs.198301 NM_004608 ENSG00000149922 TBX6 SCDO5 T-box 6 protein-coding 3.641 3.109 1.961 1.192 3.514 1.262 2.995 0.865 9.267 4.005 2.976 1.579 0.408 3.092 4.057 2.296 1.505 1.160 6.985 0.130 1.160 1.081 1.768 1.473 1.396 0.631 0.488 1.592 0.617 2.497 2.115 1.857 4.755 4.049 2.193 1.627 3.515 2.475 1.212 0.368 0.153 0.110 780 chr17 1546608 1550594 + 0 NA TTS (NM_031430) TTS (NM_031430) 482 NM_003693 8578 Hs.647430 NM_003693 ENSG00000074660 SCARF1 SREC|SREC-I|SREC1 scavenger receptor class F member 1 protein-coding 0.579 1.285 0.236 1.920 3.210 0.170 2.258 0.505 2.784 1.319 1.925 0.695 1.125 2.021 0.700 2.613 0.133 0.371 0.310 0.139 0.351 0.234 0.097 0.144 4.599 0.592 0.392 2.954 0.958 0.674 2.838 0.139 0.182 2.498 11.697 0.554 0.415 3.191 0.495 0.498 0.708 0.406 1750 chr7 30936693 30955680 + 0 NA Intergenic Intergenic -5123 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 0.407 0.311 0.016 0.215 0.228 0.067 0.622 0.201 2.648 0.324 1.079 0.580 0.567 0.058 0.365 1.306 0.070 0.480 0.027 0.051 0.790 0.419 0.101 0.124 0.465 0.097 0.050 0.210 0.293 0.250 0.091 0.531 2.407 0.580 0.243 0.369 0.204 0.222 0.689 0.555 0.061 0.021 113 chr1 150638359 150645225 + 0 NA intron (NM_018178, intron 2 of 4) intron (NM_018178, intron 2 of 4) 27880 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding 0.541 0.186 4.062 0.302 0.111 0.149 0.096 3.069 1.411 0.977 0.148 0.034 0.440 0.207 0.282 0.042 0.170 0.090 0.020 1.616 1.504 0.032 0.092 0.177 0.107 0.046 0.089 0.131 1.029 0.126 0.345 1.093 0.207 0.106 0.142 0.268 0.125 0.173 0.027 0.025 155 chr1 155050383 155064848 + 0 NA exon (NM_004952, exon 2 of 5) exon (NM_004952, exon 2 of 5) 6267 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding 0.745 0.722 0.327 0.579 1.202 2.224 0.713 0.512 1.954 0.912 1.332 0.526 0.659 0.844 0.829 0.466 0.474 0.509 0.730 0.517 0.316 0.225 0.521 0.963 1.250 0.317 0.242 0.301 0.443 1.216 1.150 3.010 2.604 1.137 1.771 0.898 2.383 5.663 0.746 0.416 0.211 0.102 793 chr17 7735983 7749284 + 0 NA promoter-TSS (NM_001080424) promoter-TSS (NM_001080424) -602 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 2.470 2.894 3.664 1.240 4.663 3.443 3.292 0.898 7.383 8.449 6.511 2.066 0.961 1.194 1.844 2.083 2.185 2.088 3.248 5.087 0.982 1.325 1.668 3.885 6.713 3.902 1.447 3.522 2.458 5.068 5.684 1.879 1.695 9.447 5.420 2.423 2.643 8.561 2.850 2.054 3.158 1.772 1673 chr6 41543070 41551758 + 0 NA intron (NM_001012426, intron 3 of 16) intron (NM_001012426, intron 3 of 16) -19047 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 0.158 1.997 0.036 1.572 3.053 0.116 0.891 0.851 7.435 3.361 2.833 2.981 1.724 1.112 0.964 7.314 0.957 1.251 0.767 0.144 2.361 2.109 0.127 2.543 0.913 0.466 0.270 1.235 1.228 2.042 0.810 1.596 2.686 2.629 6.143 0.465 0.104 0.460 1.843 1.628 0.862 0.624 1418 chr3 160383403 160398802 + 0 NA Intergenic Intergenic -3846 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 4.308 0.479 0.020 1.268 2.030 0.087 1.638 1.182 0.796 0.607 0.500 1.900 0.175 1.890 1.285 4.598 0.701 1.935 0.191 0.027 1.907 1.386 0.047 0.080 4.439 0.646 0.253 1.668 1.077 0.555 1.212 1.839 3.540 0.989 0.128 0.857 0.404 4.285 1.167 0.468 0.052 0.043 623 chr15 30915210 30921318 + 0 NA promoter-TSS (NM_001039841) promoter-TSS (NM_001039841) -615 NM_001039841 89839 Hs.659621 NM_001039841 ENSG00000187951 ARHGAP11B B'-T|FAM7B1 Rho GTPase activating protein 11B protein-coding 1.969 2.826 1.378 1.360 3.689 5.651 3.193 1.570 8.537 5.557 2.182 2.368 2.419 3.376 3.052 5.616 2.169 4.581 2.021 2.199 3.215 4.263 1.242 6.444 2.626 4.780 2.033 1.868 6.275 4.676 4.184 3.623 3.797 2.883 8.001 2.641 1.583 3.277 4.127 7.207 3.347 2.407 1070 chr19 48771975 48778514 + 0 NA intron (NM_001331098, intron 2 of 5) CpG 742 NM_001331098 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 0.132 2.198 0.277 1.619 6.105 1.700 1.486 1.245 nan 1.223 0.743 1.793 0.467 1.098 7.486 4.827 2.864 1.610 0.473 1.489 0.859 0.707 0.437 2.503 0.754 2.970 1.168 0.834 0.413 2.902 2.523 2.766 1.338 5.825 4.775 1.836 0.583 1.903 3.847 0.196 0.229 0.031 513 chr12 133262719 133272763 + 0 NA intron (NM_018663, intron 2 of 4) AluY|SINE|Alu 3549 NM_018663 5827 Hs.430299 NM_018663 ENSG00000176894 PXMP2 PMP22 peroxisomal membrane protein 2 protein-coding 2.378 1.443 0.557 0.152 1.058 0.983 1.570 0.157 2.981 1.297 1.197 0.232 0.199 0.350 1.389 1.185 0.599 0.705 0.850 1.491 0.752 0.923 1.729 1.666 1.485 1.670 0.998 0.442 0.642 2.394 2.176 3.309 1.078 2.403 1.765 0.881 0.618 3.790 0.609 0.608 0.562 0.497 1915 chr8 144676175 144682123 + 0 NA promoter-TSS (NM_032862) promoter-TSS (NM_032862) 434 NM_001130057 1936 Hs.333388 NM_001960 ENSG00000104529 EEF1D EF-1D|EF1D|FP1047 eukaryotic translation elongation factor 1 delta protein-coding 5.813 6.146 1.778 1.523 4.919 4.136 5.437 1.650 6.755 4.691 3.008 3.292 1.565 2.426 4.150 3.615 3.683 1.490 4.220 3.467 2.204 3.237 2.769 2.769 5.094 4.717 2.576 1.192 3.297 5.433 6.868 3.341 2.645 7.361 2.542 1.348 3.739 8.206 1.705 1.630 2.208 1.602 658 chr15 77789043 77808518 + 0 NA Intergenic Intergenic -19157 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 0.752 0.312 0.143 0.068 0.147 0.033 0.109 0.114 8.214 3.560 0.774 0.750 0.139 0.709 0.223 0.088 0.122 0.622 0.041 0.023 0.190 0.087 0.057 0.125 0.260 0.073 0.060 0.057 0.370 0.217 0.289 0.317 0.391 0.153 0.024 0.172 0.080 0.096 0.222 0.108 0.015 0.021 852 chr17 40510019 40517233 + 0 NA intron (NM_139276, intron 1 of 23) MER5B|DNA|hAT-Charlie 26779 NM_213662 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 0.215 0.307 0.069 0.078 0.441 1.346 0.184 nan 0.134 0.207 0.082 0.063 0.093 0.148 0.206 0.136 0.071 0.140 0.057 0.522 0.220 0.220 0.261 0.242 0.083 0.054 0.183 0.208 0.654 0.106 4.078 0.553 0.433 0.101 0.101 1.833 0.358 0.336 0.052 0.056 0.014 737 chr16 57030520 57036395 + 0 NA intron (NM_001330552, intron 1 of 47) intron (NM_001330552, intron 1 of 47) 10060 NM_001330552 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 0.404 2.267 2.281 3.044 0.279 2.760 0.362 0.074 0.083 0.167 1.369 1.033 6.930 0.476 1.227 0.016 0.735 0.051 0.095 4.193 4.651 0.176 0.381 2.707 0.320 0.226 0.612 2.835 0.180 0.725 0.080 0.205 2.096 1.849 0.021 0.056 0.158 1.400 0.244 0.118 0.174 1102 chr2 8815881 8826397 + 0 NA promoter-TSS (NM_002166) promoter-TSS (NM_002166) 852 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 (head to head) ncRNA 5.870 2.569 4.390 0.649 1.292 4.901 1.725 1.141 3.593 0.924 0.964 0.482 2.869 0.883 0.137 1.586 0.651 1.143 3.142 3.269 1.056 1.176 2.880 6.172 2.172 0.811 0.557 1.397 0.494 9.193 4.235 8.085 4.682 2.036 2.131 3.165 5.302 6.765 1.265 0.997 4.744 4.261 1326 chr22 21353891 21358615 + 0 NA promoter-TSS (NR_027052) promoter-TSS (NR_027052) 42 NR_027052 439931 Hs.517430 NR_027051 ENSG00000230513 THAP7-AS1 - THAP7 antisense RNA 1 ncRNA 6.504 9.035 9.014 2.363 5.935 4.787 8.779 2.742 nan 6.870 5.875 2.140 1.471 2.428 2.852 2.816 1.669 2.158 1.570 1.585 1.639 2.099 6.850 4.090 4.834 3.149 1.596 1.408 5.392 2.878 5.024 3.320 3.710 6.259 3.849 2.150 3.353 5.441 3.706 2.025 1.971 1.176 2 chr1 947649 961732 + 0 NA promoter-TSS (NM_001305275) promoter-TSS (NM_001305275) -813 NM_198576 375790 Hs.273330 NM_198576 ENSG00000188157 AGRN CMS8|CMSPPD agrin protein-coding 4.654 3.367 3.332 1.033 3.151 3.563 3.736 1.541 nan 3.416 2.898 1.943 0.745 1.647 2.213 2.630 1.075 1.023 1.126 0.582 1.103 1.324 2.531 0.972 3.794 3.376 1.545 1.834 1.136 2.383 2.681 1.255 1.482 4.816 3.050 1.083 2.095 6.129 1.352 2.509 1.767 0.894 1631 chr6 19443737 19456421 + 0 NA promoter-TSS (NR_134615) promoter-TSS (NR_134615) 27 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 0.113 0.135 0.141 0.075 0.257 0.103 0.096 0.050 0.980 0.188 4.756 0.347 0.056 0.051 0.157 0.285 0.031 0.050 0.040 0.017 0.089 0.029 0.006 0.085 0.082 0.009 0.006 0.097 0.039 0.099 0.034 0.336 0.219 0.209 0.007 0.145 0.261 0.055 0.162 0.102 0.009 0.004 463 chr12 58269232 58299605 + 0 NA Intergenic Intergenic -43671 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 0.603 0.410 0.047 0.580 0.871 0.242 2.669 0.871 7.265 3.971 2.977 1.352 0.814 1.783 0.417 1.339 0.097 3.307 1.025 1.135 2.365 2.009 0.282 0.200 0.235 0.232 0.177 0.343 0.923 0.863 2.585 0.702 0.764 0.810 3.286 0.472 0.177 0.991 1.203 0.635 0.150 0.140 1445 chr3 184048615 184055289 + 0 NA intron (NM_001194947, intron 32 of 32) L2b|LINE|L2 -1765 NM_001171093 131408 Hs.591307 NM_144635 ENSG00000175182 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131 member A protein-coding 6.853 1.710 0.495 0.713 1.634 1.713 3.081 1.835 1.810 1.203 1.255 1.371 1.049 0.819 0.811 3.196 0.431 0.799 0.601 0.296 1.896 1.600 0.997 0.885 4.443 7.811 2.676 0.897 2.011 0.998 3.770 0.252 0.738 4.116 2.315 0.382 0.409 1.370 1.691 2.665 4.061 3.358 1030 chr19 39880461 39883000 + 0 NA promoter-TSS (NM_001317770) promoter-TSS (NM_001317770) 105 NR_046384 54623 Hs.466714 NM_019088 ENSG00000006712 PAF1 F23149_1|PD2 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding 6.677 5.850 1.574 2.026 5.676 3.686 3.976 1.266 7.812 5.736 3.954 2.545 2.956 2.575 3.342 2.741 2.527 3.737 3.277 2.019 3.532 4.109 4.133 2.797 7.284 11.761 7.536 1.622 3.162 9.471 11.359 4.261 2.334 12.636 3.266 2.162 3.124 5.821 1.294 2.543 2.217 1.797 1005 chr19 19474931 19499653 + 0 NA Intergenic AluY|SINE|Alu -9350 NM_017660 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 1.031 0.887 0.940 0.772 2.066 0.343 1.753 0.998 nan 1.687 1.747 0.550 0.226 1.026 1.772 0.936 1.080 0.599 0.366 0.129 1.889 1.304 0.556 1.085 0.750 1.446 0.752 1.041 0.328 1.324 0.846 0.644 2.061 3.010 0.801 1.062 1.586 0.875 1.638 0.564 0.142 0.084 741 chr16 57503486 57521675 + 0 NA intron (NM_001330556, intron 1 of 6) intron (NM_001330556, intron 1 of 6) 1199 NM_001330556 55715 Hs.279832 NM_018110 ENSG00000125170 DOK4 IRS-5|IRS5 docking protein 4 protein-coding 0.236 1.084 0.055 0.031 0.146 0.167 0.116 0.023 0.466 0.155 0.354 0.056 0.091 0.197 0.206 0.575 0.053 0.208 1.780 0.116 0.156 0.104 0.799 0.334 0.432 0.294 0.184 0.401 0.158 4.382 0.440 0.255 0.202 0.282 0.132 0.074 0.132 0.517 0.174 0.075 0.142 0.101 544 chr13 111804986 111807397 + 0 NA promoter-TSS (NR_120398) promoter-TSS (NR_120398) 130 NM_003899 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 1.984 4.889 1.003 2.263 8.242 1.164 2.259 1.254 7.109 6.156 2.070 1.157 1.566 1.714 4.805 2.574 0.750 1.223 1.608 0.917 2.573 3.252 2.234 2.671 10.191 4.897 2.109 1.013 2.443 3.665 3.381 3.655 3.021 14.943 2.900 2.184 3.539 5.167 2.570 2.196 2.445 1.965 143 chr1 153914547 153922940 + 0 NA intron (NM_014856, intron 1 of 27) CpG 411 NM_014856 9909 Hs.744878 NM_014856 ENSG00000198837 DENND4B KIAA0476 DENN domain containing 4B protein-coding 1.650 1.843 0.649 0.567 1.975 2.335 1.657 0.491 14.880 12.801 1.817 0.785 1.040 1.027 1.044 1.060 0.750 1.110 1.564 1.272 1.214 1.581 1.540 2.285 2.453 1.623 0.873 0.642 0.979 2.435 2.250 5.195 4.549 2.181 1.754 0.888 2.540 6.681 1.302 0.651 0.501 0.351 605 chr14 75985870 75991205 + 0 NA promoter-TSS (NM_006399) promoter-TSS (NM_006399) -247 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 0.413 0.118 1.606 0.035 0.159 0.024 0.508 1.524 5.490 1.853 3.579 0.544 0.244 1.146 8.053 0.589 0.611 0.489 0.149 2.639 1.601 0.014 0.061 0.105 0.135 0.190 0.259 0.264 0.458 0.054 0.945 5.454 0.429 0.262 0.755 8.723 0.100 0.148 0.143 0.043 484 chr12 103342730 103360298 + 0 NA promoter-TSS (NM_004316) promoter-TSS (NM_004316) 62 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 0.062 0.098 0.021 0.011 0.042 0.014 0.058 0.202 0.088 0.074 0.008 0.080 0.012 0.077 0.033 0.010 0.058 3.880 0.004 0.021 0.033 0.073 0.063 0.014 0.009 0.048 0.241 0.093 0.048 0.024 0.042 0.073 0.026 0.007 0.019 0.111 0.013 0.004 0.026 0.014 1980 chr9 130905955 130914014 + 0 NA Intergenic Intergenic -1725 NM_005564 3934 Hs.204238 NM_005564 ENSG00000148346 LCN2 24p3|MSFI|NGAL|p25 lipocalin 2 protein-coding 3.142 0.607 0.100 2.074 5.140 0.046 1.733 1.005 4.389 2.134 0.712 0.126 4.281 5.610 2.393 1.684 0.236 0.062 0.069 1.442 1.088 0.217 0.061 0.263 0.599 0.391 1.009 0.161 1.474 0.150 0.066 3.260 0.993 0.035 0.754 2.114 0.185 0.312 0.353 0.064 0.044 932 chr17 79934185 79942558 + 0 NA intron (NM_001251888, intron 2 of 16) intron (NM_001251888, intron 2 of 16) 2945 NM_001251888 79058 Hs.298351 NM_024083 ENSG00000169696 ASPSCR1 ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 ASPSCR1, UBX domain containing tether for SLC2A4 protein-coding 1.570 2.036 1.890 0.452 2.247 4.349 2.507 0.974 4.372 2.758 4.007 0.611 0.621 1.333 1.223 1.754 0.603 1.015 1.153 1.261 1.066 0.997 1.497 1.537 12.187 1.125 0.569 1.413 1.730 3.109 2.696 1.153 2.344 3.178 1.515 0.950 9.622 3.496 0.714 0.773 0.757 0.563 1399 chr3 126625000 126636906 + 0 NA intron (NM_001320610, intron 5 of 7) intron (NM_001320610, intron 5 of 7) -76484 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 1.677 0.644 0.026 1.716 2.568 0.132 1.842 1.954 5.405 1.716 2.355 1.794 3.099 2.076 0.760 6.029 0.057 3.403 0.059 0.127 2.687 2.288 0.255 0.257 3.277 2.517 1.068 1.248 2.053 0.274 2.906 0.020 1.279 1.982 3.132 1.065 0.111 2.191 1.153 1.853 1.233 1.161 42 chr1 32398071 32430268 + 0 NA Intergenic L1MB7|LINE|L1 -10181 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 2.669 2.853 1.157 0.985 1.607 0.683 1.752 1.322 2.111 0.870 0.936 0.412 0.461 2.237 5.675 2.014 1.211 2.840 0.322 0.560 2.894 2.971 2.744 6.054 7.694 1.518 0.696 0.695 3.192 4.895 3.528 1.152 1.988 1.249 2.099 1.153 1.405 5.450 1.393 0.865 0.346 0.268 399 chr12 6870451 6881005 + 0 NA 5' UTR (NM_002824, exon 1 of 5) 5' UTR (NM_002824, exon 1 of 5) 245 NM_002824 5763 Hs.504613 NM_002824 ENSG00000159335 PTMS ParaT parathymosin protein-coding 0.994 2.012 0.111 0.376 0.842 3.310 1.614 0.679 3.954 1.805 0.717 0.776 0.864 0.498 1.060 1.479 0.816 2.088 2.205 1.076 1.639 1.656 1.781 2.515 3.875 1.236 0.664 0.278 5.293 4.701 6.812 1.326 0.957 1.043 2.393 0.185 0.813 10.540 1.508 0.884 2.603 1.633 480 chr12 96016666 96032363 + 0 NA Intergenic Intergenic -18517 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 3.389 0.235 0.008 0.407 0.718 0.546 0.247 0.331 0.959 0.235 0.226 0.769 0.090 0.458 0.982 1.285 1.398 1.139 0.217 0.035 0.959 0.545 0.169 0.754 0.436 0.276 0.195 0.214 0.362 1.923 0.343 0.473 1.350 0.989 0.294 0.664 1.582 0.205 0.507 0.214 0.227 0.116 1263 chr20 50146072 50160200 + 0 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) 6122 NM_012340 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 1.819 0.804 0.141 0.843 1.110 0.080 1.826 1.628 1.177 0.681 0.616 0.736 0.401 1.908 0.823 1.566 0.251 0.285 0.050 0.063 0.580 0.434 0.103 0.123 0.609 4.269 1.993 1.126 0.445 0.340 0.151 0.106 0.305 1.248 3.397 0.104 0.206 0.644 0.273 0.912 0.029 0.022 610 chr14 100841146 100908806 + 0 NA intron (NM_024515, intron 2 of 6) intron (NM_024515, intron 2 of 6) 32143 NM_024515 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 0.408 0.342 0.093 0.132 0.198 0.323 0.420 0.161 1.312 0.670 0.729 0.322 0.222 0.243 0.170 0.756 0.161 0.461 0.319 0.241 1.595 1.027 0.673 8.416 2.920 0.208 0.139 0.407 0.479 1.075 0.699 2.681 2.039 0.218 0.847 0.532 1.836 1.496 1.153 0.346 0.114 0.070 795 chr17 8020583 8031230 + 0 NA intron (NM_001165967, intron 2 of 3) CpG-10133 1504 NM_032580 84667 Hs.434828 NM_032580 ENSG00000179111 HES7 SCDO4|bHLHb37 hes family bHLH transcription factor 7 protein-coding 0.730 0.937 0.162 0.477 1.283 1.072 0.918 0.377 1.899 2.011 1.373 0.933 0.232 0.594 0.596 0.831 0.287 0.500 1.269 1.496 0.237 0.240 0.444 1.257 3.482 0.768 0.410 0.803 0.484 4.598 4.693 1.332 0.653 2.199 5.862 0.448 0.546 7.595 0.768 0.536 1.592 1.050 17 chr1 10726799 10756152 + 0 NA intron (NM_017766, intron 4 of 15) L2b|LINE|L2 115258 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 0.566 0.527 0.079 0.039 0.155 0.069 0.196 0.064 3.239 0.654 0.376 0.164 0.020 0.107 0.246 0.362 0.078 0.210 2.055 0.113 0.182 0.094 0.272 0.150 0.188 0.157 0.109 0.102 0.109 0.263 0.263 0.145 0.474 0.400 0.328 0.109 0.437 0.552 0.185 0.068 0.043 0.028 1485 chr4 83292856 83302405 + 0 NA Intergenic AluJb|SINE|Alu -2481 NM_001003810 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 3.328 2.807 1.412 0.891 2.898 2.268 3.745 1.458 5.074 3.019 2.426 1.837 1.101 2.029 1.740 2.936 1.110 1.372 0.740 1.397 1.343 1.710 1.910 2.764 5.216 2.090 1.071 1.140 4.847 1.571 1.961 1.772 1.610 4.560 2.078 1.131 1.135 2.467 1.249 1.248 1.072 0.660 1787 chr7 77456778 77468310 + 0 NA intron (NM_001127358, intron 1 of 17) intron (NM_001127358, intron 1 of 17) -6903 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 0.397 0.222 2.264 0.082 0.385 0.088 0.237 0.392 3.293 1.222 4.641 0.126 0.072 0.350 0.475 0.795 0.610 1.954 0.087 0.012 0.222 0.120 0.828 2.442 0.731 0.235 0.142 1.083 0.165 1.133 0.302 0.034 1.297 0.478 0.241 1.668 2.465 0.227 0.363 0.066 0.025 0.018 159 chr1 155176097 155180635 + 0 NA promoter-TSS (NM_002455) promoter-TSS (NM_002455) -124 NM_198883 4580 Hs.490874 NM_002455 ENSG00000173171 MTX1 MTX|MTXN metaxin 1 protein-coding 2.120 4.916 0.794 1.421 3.642 7.280 2.239 0.793 5.609 2.924 3.069 2.744 2.579 2.774 2.886 1.939 1.819 3.241 2.813 4.417 2.795 2.883 3.232 5.853 4.157 2.246 1.385 0.734 1.211 3.587 5.969 10.462 2.872 5.797 4.550 2.112 2.568 14.195 4.602 1.023 1.358 0.782 1381 chr3 52249125 52253796 + 0 NA Intergenic Intergenic 8719 NM_017442 54106 Hs.87968 NM_017442 ENSG00000239732 TLR9 CD289 toll like receptor 9 protein-coding 2.039 0.634 0.259 1.055 1.166 0.156 1.498 1.674 3.498 0.960 1.385 0.758 1.342 0.723 4.063 2.248 2.537 1.504 0.489 0.037 0.934 0.737 0.097 0.084 1.470 8.938 3.482 0.197 0.172 0.331 1.727 0.186 0.485 1.046 1.857 0.968 1.804 0.288 1.583 1.274 1.353 1.410 1953 chr9 109621440 109628564 + 0 NA promoter-TSS (NM_001347997) promoter-TSS (NM_001347997) -376 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 2.320 4.478 0.672 1.349 2.450 1.639 6.641 1.859 4.089 2.566 1.848 2.054 2.017 2.568 0.324 5.945 2.028 2.422 1.220 3.056 3.248 1.473 2.949 3.480 7.820 3.092 2.572 4.554 1.851 4.583 0.408 0.243 2.037 0.117 0.513 0.313 4.096 2.141 4.047 2.466 1.379 1670 chr6 36389927 36413599 + 0 NA intron (NM_152990, intron 2 of 4) L1MC4|LINE|L1 -8781 NR_104481 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 0.982 1.286 0.896 0.365 1.411 3.999 0.720 0.580 1.985 1.081 1.585 0.550 0.342 0.510 1.509 1.529 0.726 0.963 0.495 0.743 0.903 0.901 1.344 2.102 1.867 1.506 0.721 0.375 1.211 1.489 1.883 1.311 1.731 1.876 1.858 0.600 1.134 5.074 0.954 0.515 0.487 0.366 1413 chr3 156527757 156546602 + 0 NA Intergenic Intergenic -2328 NR_038387 730091 Hs.659905 NR_038387 ENSG00000240875 LINC00886 - long intergenic non-protein coding RNA 886 ncRNA 6.106 1.602 1.401 1.146 2.013 5.785 4.101 1.614 5.134 2.426 1.932 1.026 1.298 3.127 2.597 3.219 0.981 2.105 1.373 0.324 3.071 3.343 1.098 1.723 6.269 1.913 0.918 1.198 1.500 1.994 3.490 1.996 2.967 2.902 1.451 1.326 1.899 5.933 1.081 1.313 1.005 1.027 916 chr17 77738041 77754122 + 0 NA Intergenic AluSp|SINE|Alu -5896 NM_032647 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 0.356 0.797 0.077 0.118 0.375 0.221 0.283 0.033 2.870 0.965 0.627 0.218 0.176 0.225 1.308 1.927 0.202 2.366 0.258 1.437 2.445 2.808 0.192 9.441 0.759 0.463 0.307 0.090 0.514 2.764 0.425 0.734 4.715 0.427 0.414 1.396 3.043 1.337 0.309 0.385 0.125 0.082 1191 chr2 219248028 219273440 + 0 NA 3' UTR (NM_000578, exon 15 of 15) 3' UTR (NM_000578, exon 15 of 15) -2327 NM_001206878 58190 Hs.444468 NM_021198 ENSG00000144579 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD small phosphatase 1 protein-coding 1.724 3.186 1.859 1.164 2.753 5.070 2.902 0.851 7.724 4.729 2.824 1.641 1.714 1.920 2.181 2.443 1.481 1.195 1.736 3.198 1.776 2.373 2.398 3.397 3.525 1.643 0.709 1.166 1.536 4.951 3.753 1.594 2.251 2.000 3.252 1.214 2.083 7.767 1.220 3.607 0.777 0.441 1970 chr9 127456772 127461799 + 0 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 3296 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 3.644 0.076 3.323 0.607 1.577 0.101 4.774 1.469 1.276 1.352 1.382 1.087 0.499 0.282 2.769 1.253 1.752 0.330 0.039 0.056 0.082 0.029 1.592 0.155 0.276 7.454 2.604 2.196 0.277 0.227 0.705 0.034 0.081 2.736 0.199 0.115 0.364 0.254 0.219 0.179 0.331 0.152 140 chr1 153668456 153684101 + 0 NA Intergenic AluJr4|SINE|Alu -14009 NR_107050 102466879 NR_107050 ENSG00000274940 MIR8083 hsa-mir-8083 microRNA 8083 ncRNA 0.165 0.140 0.027 0.582 0.885 0.064 0.096 0.241 1.932 0.638 0.105 0.140 0.030 0.070 1.252 2.354 0.231 0.778 0.058 0.097 0.568 0.356 0.491 5.045 0.668 0.552 0.289 0.063 0.173 0.526 0.272 0.111 5.373 1.342 0.076 0.141 0.668 1.152 1.064 0.034 0.029 0.023 173 chr1 156735309 156739087 + 0 NA promoter-TSS (NM_005973) promoter-TSS (NM_005973) -76 NM_005973 5546 Hs.516948 NM_005973 ENSG00000143294 PRCC RCCP1|TPRC papillary renal cell carcinoma (translocation-associated) protein-coding 4.690 4.589 1.175 2.112 5.686 7.335 4.656 3.123 8.808 6.194 5.025 5.041 5.446 5.307 4.685 4.690 2.166 4.037 6.518 2.829 5.137 4.973 2.774 7.615 5.775 4.951 2.838 1.838 3.040 5.912 4.782 2.273 3.860 5.519 4.678 4.194 3.076 12.173 5.327 2.503 3.207 1.735 1184 chr2 208391340 208399107 + 0 NA intron (NM_004379, intron 1 of 7) GC_rich|Low_complexity|Low_complexity 607 NM_001320793 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 3.410 4.200 1.752 1.806 5.251 3.816 4.302 1.610 6.447 3.658 3.346 1.928 2.077 3.287 2.323 4.307 1.320 1.488 0.877 1.000 3.590 3.852 1.824 7.685 6.491 5.593 2.288 2.554 3.656 3.201 4.150 1.231 1.623 4.956 5.346 1.069 1.684 5.563 2.523 3.318 1.779 1.026 328 chr11 64035690 64045916 + 0 NA intron (NM_032989, intron 2 of 3) AluSx|SINE|Alu -11008 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding 1.873 3.580 1.297 0.674 1.657 3.986 1.447 0.527 6.582 4.221 2.440 1.276 1.182 1.104 3.329 1.798 1.352 1.435 1.991 2.072 2.050 1.977 1.568 2.742 6.059 4.972 2.002 1.155 2.291 3.621 2.832 1.792 1.319 1.873 1.650 1.243 1.570 3.974 2.494 3.210 1.031 0.562 63 chr1 48010481 48045809 + 0 NA Intergenic MIRb|SINE|MIR -125156 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 0.317 0.071 0.044 0.376 0.315 0.011 0.770 0.329 5.556 1.224 0.685 0.558 0.074 0.781 0.535 1.252 0.027 0.049 0.326 0.012 0.318 0.118 0.054 0.062 0.120 0.051 0.053 1.322 0.200 0.377 0.042 1.122 0.450 0.253 0.987 0.433 0.424 0.107 0.076 0.141 0.054 0.041 403 chr12 7068429 7075638 + 0 NA promoter-TSS (NR_135032) promoter-TSS (NR_135032) -375 NR_135032 105369635 Hs.744442 NR_135032 ENSG00000257084 LOC105369635 - uncharacterized LOC105369635 ncRNA 5.624 2.714 2.018 2.554 5.604 2.429 8.998 2.679 14.197 10.577 8.486 2.006 1.534 4.696 8.252 3.738 1.974 2.632 4.478 0.621 2.531 2.589 0.462 6.835 0.427 0.973 0.551 5.552 2.378 4.607 1.090 3.128 4.875 4.989 1.052 3.633 3.552 4.565 2.266 0.085 0.240 0.083 496 chr12 120515057 120525886 + 0 NA intron (NM_207311, intron 7 of 8) AluJb|SINE|Alu 34172 NM_001167606 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 0.431 0.460 0.252 0.369 0.226 0.786 0.319 0.152 0.567 0.192 0.261 0.178 0.116 0.290 1.393 1.179 0.168 0.409 0.127 0.256 0.606 0.395 0.452 1.702 0.425 0.263 0.165 0.086 0.361 1.502 0.545 0.559 1.764 0.467 0.876 0.930 3.909 0.809 0.154 0.084 0.253 0.101 2006 chrX 153231765 153239923 + 0 NA TTS (NR_046608) TTS (NR_046608) 975 NM_005334 3054 Hs.83634 NM_005334 ENSG00000172534 HCFC1 CFF|HCF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF host cell factor C1 protein-coding 6.006 6.100 3.493 0.863 2.642 4.331 4.960 1.020 8.669 5.920 6.739 1.984 1.155 2.482 3.266 4.875 1.288 1.711 4.156 3.377 2.136 3.114 1.908 5.718 6.461 5.315 2.214 4.008 4.627 4.204 4.244 1.207 3.186 4.004 2.289 2.431 3.370 7.281 2.868 4.196 2.621 1.839 1676 chr6 42258304 42272446 + 0 NA intron (NM_033502, intron 4 of 17) L1MEd|LINE|L1 -79742 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 0.455 0.176 0.009 0.824 1.917 0.495 0.235 1.599 0.948 0.155 0.178 1.024 0.167 1.089 0.956 4.236 0.346 0.602 0.063 0.078 1.731 0.885 0.052 0.084 0.130 0.111 0.138 0.557 0.847 0.298 0.710 0.686 1.054 1.378 2.111 0.361 1.031 0.174 0.593 0.161 0.033 0.022 286 chr11 693036 699600 + 0 NA promoter-TSS (NM_021008) promoter-TSS (NM_021008) -564 NM_021008 10522 Hs.243994 NM_021008 ENSG00000177030 DEAF1 MRD24|NUDR|SPN|ZMYND5 DEAF1, transcription factor protein-coding 4.168 4.832 2.487 1.443 4.970 1.930 3.640 2.352 9.121 5.004 4.001 1.295 1.421 1.670 2.795 6.167 0.840 1.243 4.028 2.509 2.374 3.033 3.248 4.117 5.722 5.950 2.253 1.879 3.538 3.843 2.986 2.130 2.027 6.330 6.574 1.938 2.378 4.203 2.684 3.024 2.044 1.166 1797 chr7 99930203 99936927 + 0 NA promoter-TSS (NR_036569) promoter-TSS (NR_036569) -123 NR_036570 101752399 Hs.521075 NR_036569 ENSG00000272752 STAG3L5P-PVRIG2P-PILRB LOC101735302-LOC101752334-PILRB STAG3L5P-PVRIG2P-PILRB readthrough ncRNA 2.247 3.413 0.784 0.959 2.641 4.032 4.449 0.988 2.784 2.478 4.565 1.175 0.985 1.539 4.657 3.676 1.528 3.173 0.863 1.586 1.478 1.763 2.104 3.060 5.411 2.974 1.358 2.192 2.647 3.496 8.131 1.768 2.733 3.297 4.194 1.763 2.364 5.707 2.356 1.599 3.100 2.030 1944 chr9 86589570 86603402 + 0 NA promoter-TSS (NM_002140) promoter-TSS (NM_002140) -789 NM_031262 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 2.137 1.825 2.728 1.126 2.976 1.633 3.054 0.870 4.148 2.934 1.376 1.468 0.819 1.325 1.886 2.862 1.037 1.374 0.908 1.274 1.998 2.652 1.321 3.218 3.390 2.854 1.303 1.243 2.433 2.049 3.013 0.950 2.060 3.995 1.913 1.126 1.120 2.001 1.948 1.335 1.478 1.036 1453 chr3 189551186 189564697 + 0 NA intron (NM_001329964, intron 4 of 13) intron (NM_001329964, intron 4 of 13) 10230 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 0.673 0.168 0.096 0.800 1.461 0.056 1.008 0.418 8.565 5.137 2.124 0.783 0.035 0.921 0.635 1.025 1.574 0.221 0.063 0.631 0.177 0.017 0.170 0.246 0.027 0.032 2.344 0.059 0.288 0.126 0.060 1.599 1.176 0.109 1.753 0.264 0.431 0.697 0.023 0.021 0.019 1707 chr6 129952057 130014089 + 0 NA intron (NM_033515, intron 1 of 14) intron (NM_033515, intron 1 of 14) 48297 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 1.630 0.842 0.039 0.208 0.471 3.605 0.397 0.426 1.380 0.557 0.354 0.321 0.535 0.731 0.653 0.701 0.193 3.032 0.029 0.013 0.948 0.514 0.019 2.128 0.428 0.667 0.394 0.498 0.495 0.934 0.593 0.513 0.223 0.283 0.917 0.310 0.040 0.115 0.806 0.970 1.821 2.258 1108 chr2 16429243 16440206 + 0 NA Intergenic Intergenic 244175 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.131 0.089 4.952 0.039 0.023 0.050 0.010 0.426 0.139 0.175 0.026 0.030 0.035 0.032 0.009 0.042 0.037 0.011 0.029 0.126 0.005 0.064 0.091 0.097 0.017 0.144 0.066 0.033 0.009 0.100 0.076 0.032 0.057 0.055 0.037 0.014 1132 chr2 60775856 60783391 + 0 NA intron (NM_138559, intron 1 of 4) CpG 1010 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 1.004 0.124 1.116 0.828 2.992 0.175 0.145 0.450 4.319 3.280 2.616 0.193 1.855 1.329 0.077 0.957 0.013 6.069 2.251 0.093 1.359 0.732 0.049 0.544 0.745 4.556 2.075 0.732 1.085 0.551 2.737 1.142 3.144 1.556 0.036 2.768 0.746 9.410 0.251 0.657 0.099 0.039 299 chr11 10828637 10831750 + 0 NA promoter-TSS (NM_001172705) promoter-TSS (NM_001172705) 389 NM_001418 1982 Hs.183684 NM_001418 ENSG00000110321 EIF4G2 AAG1|DAP5|NAT1|P97 eukaryotic translation initiation factor 4 gamma 2 protein-coding 8.056 7.821 2.747 1.708 5.942 3.349 6.051 3.211 13.161 11.141 10.224 2.025 3.092 3.584 6.421 5.176 1.866 3.509 3.997 6.279 3.776 5.855 4.066 4.540 12.963 10.827 4.184 3.615 8.303 7.924 5.304 4.225 4.216 6.908 8.064 2.714 4.344 7.346 5.404 6.021 4.825 3.594 564 chr14 37215248 37258954 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 110328 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 0.237 0.067 1.468 0.403 0.913 0.027 0.554 0.326 13.151 3.066 0.907 0.933 0.038 0.160 0.185 0.304 0.054 0.142 0.230 0.045 0.151 0.034 0.012 0.204 0.065 0.028 0.014 0.627 0.160 0.112 0.054 0.034 0.288 0.761 0.085 0.435 0.398 0.048 0.123 0.016 0.017 0.011 91 chr1 94125211 94188524 + 0 NA intron (NM_001261408, intron 3 of 13) intron (NM_001261408, intron 3 of 13) -9473 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 2.400 1.883 0.394 1.368 2.057 1.112 1.990 1.395 3.432 1.313 0.478 1.786 0.969 1.578 3.513 2.678 1.196 1.705 0.435 0.033 2.076 2.020 0.444 1.794 6.263 1.606 0.650 2.094 4.790 0.858 1.664 0.358 2.265 1.764 3.432 0.857 1.227 1.390 0.933 1.723 3.135 3.287 1341 chr22 38282627 38304181 + 0 NA Intergenic AluSq|SINE|Alu -8751 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 3.257 1.478 0.296 0.758 1.582 0.361 1.489 0.812 3.462 2.028 1.589 0.744 0.329 0.399 4.582 1.271 2.342 0.613 0.365 0.277 0.238 0.229 0.411 0.281 1.111 0.791 0.380 0.827 1.253 1.281 1.247 0.330 1.039 1.543 0.525 0.850 0.661 1.358 1.359 0.426 0.385 0.275 584 chr14 64965907 64978684 + 0 NA promoter-TSS (NM_001304507) promoter-TSS (NM_001304507) -364 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 3.772 2.673 7.385 0.668 2.162 6.792 5.152 1.354 6.351 3.772 4.098 1.522 1.208 2.699 3.816 2.081 1.812 1.902 1.295 1.628 3.645 4.338 1.312 3.861 3.238 3.273 1.544 2.114 3.172 4.756 4.338 3.130 3.904 2.051 4.425 2.094 2.604 6.106 5.265 4.277 1.361 0.978 362 chr11 73575862 73589363 + 0 NA Intergenic AluSz|SINE|Alu -5132 NM_001267806 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 0.911 1.058 0.639 0.380 0.668 0.799 0.691 0.408 nan 1.344 0.949 0.725 0.377 1.161 1.812 1.514 0.376 0.988 0.840 0.482 0.999 0.883 0.399 0.886 2.492 1.032 0.624 0.801 1.139 1.162 0.912 4.374 1.148 0.835 1.831 0.596 0.853 1.704 1.109 0.663 0.469 0.364 1450 chr3 187452789 187469982 + 0 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 2128 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 2.988 1.818 1.283 0.916 2.739 2.782 3.300 1.276 5.607 2.961 3.338 1.598 1.487 2.931 5.543 2.222 1.149 2.530 1.464 0.492 4.660 4.377 0.443 2.793 2.059 1.570 1.087 1.416 3.058 1.729 2.510 1.737 2.316 2.572 3.351 0.844 1.474 0.799 2.057 1.435 0.710 0.471 547 chr13 115045361 115049031 + 0 NA exon (NM_080687, exon 1 of 9) exon (NM_080687, exon 1 of 9) 137 NM_023011 65110 Hs.533855 NM_023011 ENSG00000169062 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 1.902 5.808 3.304 5.155 10.709 3.473 2.181 1.437 13.511 11.768 3.888 2.423 2.218 2.346 7.626 3.165 1.253 1.810 2.604 5.933 3.290 4.798 1.820 5.121 16.254 6.789 2.917 2.517 5.706 4.328 4.798 3.421 3.163 11.110 4.573 1.790 6.131 6.404 4.095 5.545 3.107 2.227 376 chr11 111169075 111207131 + 0 NA Intergenic L1PB1|LINE|L1 -12330 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 0.087 0.091 0.577 0.070 0.214 0.037 0.543 0.174 4.269 0.781 0.926 0.364 0.121 1.532 0.812 0.189 0.040 0.302 0.810 0.022 1.485 1.266 0.043 0.091 0.262 0.124 0.096 0.801 0.183 0.881 0.049 0.225 0.446 0.103 0.075 0.239 1.024 0.148 0.054 0.046 0.033 0.016 1730 chr7 5804583 5822174 + 0 NA intron (NM_207111, intron 1 of 16) AluSx4|SINE|Alu 7983 NM_207111 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 1.242 1.785 0.165 0.226 0.804 3.256 1.180 0.210 nan 0.789 0.983 0.357 0.809 0.439 0.602 1.013 0.316 3.866 0.242 0.448 3.866 3.515 0.695 1.437 2.623 0.914 0.580 0.344 3.910 1.037 3.343 0.463 0.751 0.932 3.891 0.792 0.457 2.098 2.212 1.243 3.323 2.745 1581 chr5 137798903 137802414 + 0 NA promoter-TSS (NM_001964) promoter-TSS (NM_001964) -523 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 3.739 3.536 3.053 0.973 3.320 4.602 2.670 0.932 13.482 9.547 6.992 1.412 1.420 3.337 3.568 2.591 2.017 2.246 2.041 3.109 2.805 2.445 3.980 3.982 2.938 4.001 1.891 1.225 1.921 5.661 6.365 2.378 4.498 10.120 3.723 2.573 2.743 7.748 2.281 3.197 2.788 1.604 370 chr11 93470140 93476702 + 0 NA intron (NM_024116, intron 1 of 5) AluJb|SINE|Alu 1282 NM_024116 79101 Hs.355750 NM_024116 ENSG00000166012 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding 2.906 3.497 1.791 0.954 3.304 2.849 2.568 1.780 4.094 4.177 3.113 1.949 1.725 4.830 9.300 2.891 1.281 2.357 2.397 1.320 2.403 2.475 1.641 3.634 8.701 4.883 2.226 2.872 4.310 2.366 2.674 2.226 3.438 2.982 7.314 2.478 2.738 2.605 3.796 1.978 2.446 1.756 1008 chr19 35484462 35500559 + 0 NA intron (NM_001136199, intron 1 of 17) AluSx|SINE|Alu 1286 NM_001320035 57655 Hs.515351 NM_020895 ENSG00000089351 GRAMD1A KIAA1533 GRAM domain containing 1A protein-coding 2.258 1.226 1.312 0.567 1.494 1.627 1.428 0.627 4.789 2.050 2.257 0.878 0.927 1.045 0.898 1.120 0.541 1.028 0.305 0.328 2.366 2.311 1.116 1.594 2.414 1.656 0.678 0.720 0.490 9.285 2.784 2.935 1.535 2.389 0.941 0.554 2.209 1.562 0.738 1.116 0.347 0.218 652 chr15 74242375 74259982 + 0 NA Intergenic L1M4|LINE|L1 -30589 NR_040068 100287616 Hs.599785 NR_040066 ENSG00000261801 LOXL1-AS1 - LOXL1 antisense RNA 1 ncRNA 1.128 0.645 0.021 0.613 0.597 0.060 0.839 0.908 0.814 0.192 0.077 1.187 2.190 0.570 0.524 3.275 0.049 1.656 0.080 0.066 1.667 1.084 0.159 0.213 1.453 0.238 0.180 0.194 9.941 0.134 1.444 0.032 0.496 0.551 3.353 0.333 0.103 0.256 0.463 1.561 0.245 0.112 1294 chr21 35857233 35864027 + 0 NA intron (NM_000219, intron 2 of 3) LTR27B|LTR|ERV1 22983 NM_001270403 3753 Hs.121495 NM_000219 ENSG00000180509 KCNE1 ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK potassium voltage-gated channel subfamily E regulatory subunit 1 protein-coding 0.036 0.070 5.319 0.055 0.141 0.009 0.040 0.388 0.035 0.210 0.021 0.087 0.032 0.227 0.010 0.113 0.287 0.024 0.052 0.010 0.032 0.047 0.070 0.030 0.023 0.078 0.128 0.096 0.064 0.036 0.082 0.629 0.048 0.036 0.024 0.077 0.082 0.046 0.034 89 chr1 93810111 93815095 + 0 NA intron (NM_001938, intron 1 of 2) intron (NM_001938, intron 1 of 2) 1125 NM_001938 1810 Hs.348418 NM_001938 ENSG00000117505 DR1 NC2|NC2-BETA|NC2B down-regulator of transcription 1 protein-coding 5.428 2.595 1.911 1.312 4.825 2.974 4.438 1.803 6.827 4.958 3.072 2.404 1.353 2.847 6.559 2.819 1.841 2.550 16.543 2.707 2.495 2.826 1.772 2.760 5.120 3.819 1.313 3.894 3.936 2.336 3.664 1.529 4.413 3.874 7.461 1.799 1.545 3.739 2.135 1.396 1.944 1.594 260 chr10 81946287 81972456 + 0 NA intron (NM_001278408, intron 1 of 16) AluSz6|SINE|Alu 4876 NM_001278408 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ANX11|CAP50 annexin A11 protein-coding 5.959 1.209 1.242 0.717 2.366 2.030 4.051 1.707 5.514 3.091 2.214 0.620 0.585 2.924 3.050 2.387 0.885 1.279 0.934 1.522 1.460 1.426 0.507 1.632 3.090 2.096 0.831 1.501 1.170 2.712 1.730 1.124 2.028 4.046 2.159 1.726 1.675 1.037 1.308 0.738 1.360 1.264 1557 chr5 68738363 68751553 + 0 NA Intergenic AluSx|SINE|Alu 34019 NM_001038603 153562 Hs.657687 NM_144724 ENSG00000152939 MARVELD2 DFNB49|MARVD2|MRVLDC2|Tric MARVEL domain containing 2 protein-coding 0.394 0.160 0.047 0.187 0.200 0.048 0.492 1.972 0.964 0.176 1.179 0.111 0.098 1.102 0.255 0.464 0.036 0.303 0.652 0.016 1.253 0.618 0.061 0.237 0.161 0.151 0.100 1.061 0.150 0.598 0.234 0.095 0.565 0.275 0.217 0.241 0.215 0.101 0.449 0.081 1.049 0.563 561 chr14 36945327 36951173 + 0 NA intron (NR_138596, intron 2 of 4) intron (NR_138596, intron 2 of 4) 34740 NR_138599 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 0.199 0.082 0.085 2.207 4.420 0.010 2.960 3.665 9.304 2.379 1.463 2.149 0.080 5.067 0.049 2.120 0.017 0.016 0.051 0.047 0.793 0.683 0.038 0.055 0.094 0.083 0.120 3.755 0.358 0.056 0.061 0.023 4.254 0.192 0.230 0.043 0.029 0.538 0.013 0.552 0.486 390 chr11 129256152 129265150 + 0 NA intron (NM_003658, intron 1 of 3) intron (NM_003658, intron 1 of 3) 14770 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.933 0.122 4.157 0.022 0.140 0.049 0.023 0.061 0.407 0.079 0.229 0.115 0.066 0.256 0.151 1.529 0.064 0.035 0.046 0.016 0.113 0.043 0.153 0.013 0.026 0.131 0.155 0.054 0.204 0.035 0.201 0.071 0.113 0.068 0.476 0.117 0.123 0.042 0.013 0.017 775 chr16 89567496 89576652 + 0 NA Intergenic Intergenic -2722 NM_199367 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7, paraplegin matrix AAA peptidase subunit protein-coding 3.808 4.548 1.486 1.665 5.018 4.155 3.602 1.122 2.937 1.512 1.612 1.765 1.446 1.795 2.445 2.742 0.615 3.394 0.751 0.529 4.207 4.345 2.369 5.647 9.037 4.001 2.073 1.024 2.338 6.175 5.147 1.572 3.671 7.434 7.148 1.855 1.706 2.900 2.633 0.988 1.088 0.717 1002 chr19 18432194 18455353 + 0 NA Intergenic Intergenic -7624 NM_001300927 54858 Hs.131776 NM_017712 ENSG00000130517 PGPEP1 PAP-I|PGI|PGP|PGP-I|PGPI|Pcp pyroglutamyl-peptidase I protein-coding 0.875 0.773 0.314 0.350 1.027 1.109 0.930 0.567 nan 0.914 0.987 0.334 0.307 0.540 2.659 0.720 0.517 0.638 0.454 0.300 0.662 0.656 0.759 1.034 1.020 0.916 0.472 0.335 0.520 1.523 1.644 1.002 0.699 1.113 0.906 0.427 0.838 1.414 0.942 0.430 0.251 0.168 1821 chr7 148839991 148846702 + 0 NA intron (NM_020781, intron 2 of 6) intron (NM_020781, intron 2 of 6) -1214 NM_170686 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 5.272 2.946 4.447 1.605 4.671 0.998 4.399 1.725 8.589 5.457 8.943 2.097 0.581 1.451 4.232 1.833 2.625 2.507 1.460 0.806 1.049 0.894 1.328 1.985 1.866 1.988 0.815 3.682 1.506 3.256 4.308 1.738 3.848 6.075 1.957 1.257 5.807 4.520 1.563 0.353 1.399 0.786 1565 chr5 90597072 90630661 + 0 NA Intergenic AluJb|SINE|Alu -3647 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 0.312 1.810 0.064 0.644 1.320 2.585 1.518 1.118 3.622 1.470 1.173 0.757 0.886 1.501 1.469 2.015 0.638 1.695 0.060 0.111 1.895 1.311 0.198 2.700 1.509 1.140 0.558 0.784 0.459 1.551 1.532 0.940 1.439 0.902 2.930 1.007 0.483 1.596 0.803 0.637 1.795 1.736 1505 chr4 185568669 185572407 + 0 NA promoter-TSS (NM_001345901) promoter-TSS (NM_001345901) 91 NM_004346 836 Hs.141125 NM_004346 ENSG00000164305 CASP3 CPP32|CPP32B|SCA-1 caspase 3 protein-coding 4.345 4.293 0.911 0.462 3.040 2.949 3.934 2.038 6.472 4.116 3.830 2.010 1.403 1.897 2.832 3.247 1.396 1.826 0.911 1.887 2.773 2.404 1.581 3.267 2.325 9.061 3.787 1.421 7.555 2.896 4.298 1.811 2.069 4.270 3.079 1.338 2.098 2.885 2.270 1.978 1.616 1.362 1464 chr4 6954556 6958960 + 0 NA intron (NM_001330638, intron 1 of 12) intron (NM_001330638, intron 1 of 12) 865 NM_001330638 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 0.131 0.264 2.511 1.410 4.536 0.029 1.939 2.102 6.734 2.231 3.058 1.297 0.178 1.257 1.636 3.412 1.256 0.093 0.034 0.063 1.072 0.640 0.148 0.053 0.189 0.411 0.195 1.859 0.249 0.382 0.163 0.750 0.580 8.300 0.077 0.917 0.598 0.071 0.413 0.052 0.105 0.035 1193 chr2 219856889 219868608 + 0 NA Intergenic Intergenic 3682 NR_029867 494324 NR_029867 ENSG00000198973 MIR375 MIRN375|hsa-mir-375|miRNA375|mir-375 microRNA 375 ncRNA 0.166 0.186 0.042 0.356 0.559 0.334 0.877 0.225 2.589 1.824 0.445 0.199 0.181 0.206 0.181 0.508 0.073 0.182 5.260 0.036 0.379 0.192 0.271 1.614 0.172 0.124 0.126 0.197 0.145 0.584 0.418 0.215 0.277 0.567 0.340 0.168 0.177 1.648 0.197 0.201 0.020 0.040 333 chr11 65075055 65086369 + 0 NA Intergenic AluJb|SINE|Alu -1577 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding 1.005 3.464 0.126 0.588 1.420 0.880 0.397 0.945 4.707 2.283 0.696 1.573 0.676 1.794 1.953 1.856 0.541 1.070 0.591 0.548 1.714 1.513 1.392 1.066 3.906 5.044 2.039 0.568 0.428 1.800 1.659 0.321 1.511 1.069 1.742 1.568 0.283 1.671 1.259 1.277 0.387 0.206 1349 chr22 43251878 43265316 + 0 NA Intergenic AluJr|SINE|Alu -5189 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 1.870 1.699 0.647 0.533 1.404 0.719 2.766 1.637 2.628 1.067 1.552 0.848 0.408 0.745 1.382 2.002 0.597 0.536 0.232 0.197 0.385 0.408 0.295 0.291 0.825 0.549 0.343 0.561 0.588 0.788 0.894 0.632 0.888 1.774 0.752 0.220 0.728 1.064 0.948 1.153 0.180 0.131 540 chr13 111356385 111370487 + 0 NA Intergenic Intergenic -1534 NM_198217 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 1.365 3.291 1.039 1.628 5.662 1.015 2.164 0.969 5.526 3.648 1.994 0.883 0.938 1.312 3.887 1.683 0.746 1.006 0.872 2.281 1.658 1.805 1.048 2.075 8.493 3.053 1.609 0.883 2.406 2.307 2.066 2.354 1.652 8.001 1.961 0.944 1.925 3.417 2.177 2.165 2.132 1.528 4 chr1 2984601 2996285 + 0 NA intron (NM_199454, intron 1 of 16) CpG 4701 NM_199454 63976 Hs.99500 NM_022114 ENSG00000142611 PRDM16 CMD1LL|KMT8F|LVNC8|MEL1|PFM13 PR/SET domain 16 protein-coding 0.062 0.040 0.021 0.016 0.027 0.011 0.182 0.018 nan 0.165 0.068 0.025 0.229 0.348 0.025 0.183 0.131 0.039 1.394 0.155 3.037 4.292 0.113 0.054 0.109 0.267 0.305 0.019 0.188 0.244 0.067 0.020 0.023 0.054 0.079 0.042 0.062 1.379 0.074 0.046 0.647 0.328 1995 chrX 12988614 13028491 + 0 NA Intergenic AluJr|SINE|Alu 15326 NM_021109 7114 Hs.437277 NM_021109 ENSG00000205542 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 1.677 1.043 0.311 0.800 1.360 0.515 1.159 0.822 1.166 0.571 2.095 1.643 0.395 0.748 1.362 1.211 0.411 2.619 0.240 0.014 1.925 1.626 0.178 1.361 0.598 0.475 0.247 1.090 1.060 1.283 0.444 0.614 1.631 1.848 0.638 0.300 0.535 0.806 1.170 0.862 0.209 0.172 1315 chr22 18109748 18123907 + 0 NA Intergenic L2b|LINE|L2 -4523 NM_001270730 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 3.413 1.968 4.495 1.673 4.197 2.641 4.939 2.443 nan 4.132 4.031 1.505 0.827 1.934 2.320 1.743 2.069 2.079 0.622 0.782 1.665 1.467 1.592 2.696 1.958 1.823 0.745 1.772 2.598 1.486 3.222 2.537 2.769 5.346 3.760 1.501 1.980 1.258 3.525 2.952 1.924 1.807 397 chr12 6468386 6504299 + 0 NA intron (NM_001270987, intron 1 of 9) intron (NM_001270987, intron 1 of 9) 181 NM_001159575 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 2.398 1.950 1.084 1.086 2.810 0.496 4.722 1.874 8.438 4.262 3.712 1.253 1.236 2.304 3.742 2.912 1.414 2.196 1.491 0.077 2.901 3.214 0.678 2.579 2.625 1.277 0.625 2.764 3.491 7.157 3.731 1.219 2.735 2.671 3.003 1.413 3.174 1.799 1.627 0.700 2.313 1.943 1479 chr4 68264440 68266873 + 0 NA Intergenic ALR/Alpha|Satellite|centr 22062 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 4.685 6.473 3.905 6.413 7.633 11.665 8.453 7.605 10.726 14.026 9.342 8.331 13.688 6.660 19.918 8.248 2.113 8.389 7.750 6.045 7.126 5.114 2.090 10.213 8.996 4.108 2.735 6.791 19.656 6.023 6.451 4.840 9.459 6.101 8.539 7.233 9.119 8.561 5.888 3.674 3.241 2.289 160 chr1 155188041 155198802 + 0 NA intron (NR_002188, intron 1 of 12) AluJo|SINE|Alu 3904 NR_002188 2630 Hs.719930 NR_002188 ENSG00000160766 GBAP1 GBAP glucosylceramidase beta pseudogene 1 pseudo 1.609 2.130 0.721 1.432 2.969 2.632 2.637 1.446 4.149 1.410 1.711 1.230 1.440 2.375 2.016 1.775 0.802 2.113 1.304 1.403 3.087 2.627 1.056 3.075 1.678 1.389 0.632 1.289 1.512 1.241 1.941 5.834 2.287 2.120 2.230 1.015 1.071 3.526 3.651 1.185 1.515 0.991 336 chr11 65306913 65331471 + 0 NA intron (NM_001164266, intron 8 of 26) intron (NM_001164266, intron 8 of 26) 6507 NM_001164266 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 1.054 2.385 0.620 1.217 2.923 1.277 2.005 0.849 9.104 5.754 3.183 3.323 1.087 1.159 2.897 2.637 0.638 1.769 2.202 0.359 0.833 0.528 1.563 0.801 9.278 0.604 0.391 1.916 1.295 2.413 2.869 0.428 2.382 2.747 2.132 0.677 1.823 2.221 0.830 2.059 0.792 0.831 1965 chr9 119027865 119052151 + 0 NA intron (NM_002581, intron 9 of 21) AluSx|SINE|Alu 122877 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 0.053 0.176 0.018 0.389 0.268 0.164 0.151 0.017 nan 0.073 0.073 0.024 0.223 0.004 0.108 0.076 0.004 0.415 0.016 0.006 0.085 0.036 0.006 0.192 0.386 0.062 0.045 0.063 0.156 0.493 0.067 0.052 0.278 0.112 0.019 0.065 0.048 0.065 0.114 0.075 8.784 10.577 1228 chr20 30742093 30746669 + 0 NA intron (NM_014742, intron 13 of 17) MER2|DNA|TcMar-Tigger 33782 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein, Y-linked 26, pseudogene pseudo 0.534 0.616 0.256 0.494 0.269 0.284 0.275 nan 0.176 0.140 0.136 0.285 0.627 0.136 0.477 0.063 0.174 0.173 0.060 0.328 0.275 0.144 0.260 2.712 0.329 0.239 0.112 0.282 0.150 0.668 6.469 0.172 0.351 0.273 0.133 0.061 0.140 0.435 0.136 0.076 0.033 1909 chr8 143749987 143765103 + 0 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -4329 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 4.402 2.487 0.143 1.033 2.465 2.681 1.729 1.830 3.736 1.451 0.877 2.582 1.157 1.244 6.965 4.023 3.470 1.808 0.329 0.790 2.173 1.728 1.033 1.276 5.446 2.127 1.172 0.748 2.718 2.092 2.253 1.212 3.870 3.262 3.877 1.691 6.401 3.739 1.538 0.632 0.899 0.660 1309 chr21 45004876 45024176 + 0 NA intron (NM_007031, intron 7 of 8) L1MEe|LINE|L1 15344 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 2.640 1.503 1.282 0.816 1.902 2.714 0.821 1.718 1.579 0.923 2.214 1.949 0.735 1.052 1.257 4.071 1.022 1.515 0.057 0.043 0.849 0.633 1.714 2.289 5.441 0.556 0.419 0.501 5.350 0.745 0.004 0.642 1.746 2.409 1.578 1.215 0.489 1.353 1.399 2.629 0.987 0.573 747 chr16 67426494 67441389 + 0 NA intron (NM_013304, intron 4 of 10) intron (NM_013304, intron 4 of 10) -6503 NM_016140 51673 Hs.534458 NM_015964 ENSG00000159713 TPPP3 CGI-38|TPPP/p20|p20|p25gamma tubulin polymerization promoting protein family member 3 protein-coding 0.373 0.668 0.096 0.850 1.593 0.081 0.576 0.389 1.475 0.386 1.078 1.252 0.040 0.146 0.519 0.623 0.251 0.416 0.229 0.065 0.373 0.187 0.183 0.309 0.217 0.108 0.052 0.619 0.148 0.505 0.354 0.086 2.111 3.927 0.044 0.500 2.602 0.326 0.156 0.025 0.031 1400 chr3 127307596 127318937 + 0 NA Intergenic HERV16-int|LTR|ERVL -3664 NM_001142646 131601 Hs.6418 NM_016372 ENSG00000163870 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein adipocyte associated 1 protein-coding 3.714 2.156 0.881 0.746 2.609 2.667 3.956 1.173 4.003 1.800 1.793 0.816 0.751 1.822 1.293 2.549 0.784 1.184 0.673 0.896 2.177 2.324 1.699 2.452 6.771 3.283 1.636 1.159 2.329 1.922 3.034 2.320 2.689 3.752 2.392 1.120 2.136 3.930 1.256 0.848 0.823 0.495 949 chr18 45741601 45750130 + 0 NA intron (NM_001318841, intron 2 of 4) MIR|SINE|MIR -82185 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 0.068 0.218 0.051 0.025 0.015 0.057 0.025 2.733 0.336 0.158 0.017 0.005 0.039 0.160 0.033 0.023 0.054 6.020 0.065 0.025 0.026 0.065 0.100 0.030 0.018 0.036 0.070 0.134 0.018 0.120 1.246 0.011 0.115 0.149 0.073 0.056 0.206 0.014 1124 chr2 43295653 43316783 + 0 NA Intergenic Intergenic -39536 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 1.431 1.199 1.534 2.099 0.093 1.321 1.017 3.345 0.779 1.366 1.266 2.102 1.489 3.766 3.948 0.894 1.380 0.067 0.020 2.455 1.526 0.079 0.120 3.610 0.854 0.490 0.932 3.183 0.450 0.495 0.093 0.805 4.430 2.113 0.794 1.345 0.374 1.797 1.562 0.709 0.497 759 chr16 84757421 84772577 + 0 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 31444 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 1.463 3.839 0.357 0.788 2.354 6.039 0.888 0.396 2.143 1.267 1.031 1.168 1.012 0.870 3.917 1.532 0.626 3.181 0.606 0.378 2.453 1.828 0.835 3.913 3.624 4.630 1.972 0.663 1.838 1.374 1.709 1.220 2.645 2.149 5.916 1.248 1.630 1.689 1.586 0.970 1.672 1.681 649 chr15 72036570 72047358 + 0 NA intron (NM_001286429, intron 8 of 11) MER5A1|DNA|hAT-Charlie -58086 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 1.445 1.242 0.017 1.246 2.246 5.914 2.104 1.917 4.182 2.221 1.098 1.537 1.887 1.559 0.483 2.417 0.116 2.013 0.046 0.010 1.389 0.799 0.048 2.778 2.032 0.264 0.152 2.128 1.515 3.781 0.228 2.852 2.259 3.258 2.918 0.765 1.401 0.279 2.145 1.192 1.855 1.659 1507 chr4 188934037 188944482 + 0 NA Intergenic Intergenic 22334 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 0.049 0.051 3.266 0.019 0.111 0.036 0.048 0.010 0.214 0.071 0.068 0.028 0.083 0.663 0.316 1.648 0.035 0.029 0.564 0.204 0.177 0.104 0.074 0.067 0.030 0.022 0.221 0.187 0.067 0.023 0.454 0.218 0.009 0.799 2.629 0.080 0.066 0.037 0.011 0.015 65 chr1 54868689 54878153 + 0 NA Intergenic Intergenic -1353 NM_001009955 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 0.805 2.362 1.425 1.380 3.798 1.229 1.343 0.701 nan 1.670 1.330 0.964 0.635 1.189 1.046 1.716 0.892 1.453 1.062 1.975 1.095 0.776 1.968 1.361 2.296 0.529 0.348 1.889 1.416 2.365 2.368 0.791 1.438 3.000 0.542 0.751 1.805 3.380 0.899 1.056 0.438 0.225 1634 chr6 19837352 19853033 + 0 NA Intergenic Intergenic 7591 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 0.327 0.466 1.079 0.135 0.606 4.589 0.389 0.054 1.604 0.683 4.661 0.392 0.138 0.286 0.159 0.252 0.288 0.059 0.222 0.058 0.424 0.269 0.442 0.832 0.664 0.019 0.040 0.098 0.109 0.826 0.702 0.776 1.280 1.680 0.059 0.367 1.484 0.956 0.491 0.403 0.011 1864 chr8 74203257 74210145 + 0 NA promoter-TSS (NM_000971) promoter-TSS (NM_000971) -136 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 2.439 3.242 1.541 1.794 4.390 2.668 5.164 1.926 8.825 6.214 5.164 2.042 1.416 2.671 3.498 4.104 1.164 3.864 2.114 1.350 2.701 3.219 2.172 2.654 3.824 4.352 2.668 8.662 3.291 4.879 6.454 3.136 6.608 3.041 3.721 2.900 4.939 2.194 3.283 1.738 3.235 2.675 812 chr17 27272526 27280196 + 0 NA intron (NM_020889, intron 2 of 8) CpG 2147 NM_001033561 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 4.189 5.534 1.614 2.071 5.702 2.599 4.479 1.983 10.972 9.516 6.342 2.062 3.333 2.772 3.913 4.067 2.241 1.761 2.051 4.021 4.424 5.743 2.835 3.912 11.803 6.888 3.855 1.441 5.342 6.967 3.371 3.116 3.448 4.446 3.192 2.217 3.120 7.560 3.146 2.834 3.428 2.634 1660 chr6 33171903 33176984 + 0 NA 3' UTR (NM_014234, exon 9 of 9).3 3' UTR (NM_014234, exon 9 of 9).3 -1169 NR_029633 407002 NR_029633 ENSG00000199036 MIR219A1 MIR219-1|MIRN219-1|MRI219-1|hsa-mir-219a-1|mir-219|mir-219a-1 microRNA 219a-1 ncRNA 5.209 6.877 0.942 1.940 4.624 7.534 2.355 1.443 6.488 4.644 3.971 4.086 1.468 1.479 2.130 6.592 0.686 2.957 2.434 2.998 1.876 1.798 1.509 1.476 4.242 3.250 1.672 2.056 2.675 2.478 6.533 3.605 2.668 9.331 3.002 2.148 1.755 6.637 2.628 2.894 6.070 3.161 391 chr11 129693534 129737663 + 0 NA intron (NM_001331210, intron 2 of 6) L1MEf|LINE|L1 29922 NM_001331211 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 0.385 0.296 1.413 0.422 0.841 0.180 0.667 0.659 2.902 1.404 0.712 0.881 0.329 1.392 1.940 2.091 0.563 0.310 0.107 0.025 1.664 1.069 0.150 0.127 0.321 0.276 0.168 1.187 0.373 0.231 0.103 0.138 2.222 1.374 0.480 1.380 1.580 0.106 0.718 0.414 0.502 0.414 994 chr19 14132303 14144148 + 0 NA promoter-TSS (NM_001311197) promoter-TSS (NM_001311197) -735 NM_080864 117579 Hs.352155 NM_080864 ENSG00000171136 RLN3 H3|RXN3|ZINS4|insl7 relaxin 3 protein-coding 0.427 0.440 0.016 1.073 1.496 0.470 3.328 1.342 nan 0.822 0.976 0.468 0.446 1.667 1.332 2.368 0.485 0.652 0.175 0.339 3.981 4.130 0.509 0.605 0.670 0.815 0.349 0.750 1.164 1.105 1.158 0.414 0.915 2.092 0.515 0.260 0.846 1.575 1.448 0.567 0.170 0.038 347 chr11 66884664 66889541 + 0 NA non-coding (NR_027473, exon 1 of 21) non-coding (NR_027473, exon 1 of 21) 362 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 5.076 5.843 3.615 0.821 4.677 2.253 4.411 1.810 9.904 7.751 4.751 1.282 0.823 2.678 6.167 3.385 3.206 8.267 2.435 4.123 3.871 4.989 2.780 3.387 10.599 4.357 2.810 2.184 4.097 5.207 3.914 6.892 5.870 5.047 5.096 1.547 3.976 16.429 7.642 2.819 1.213 0.711 1688 chr6 51330251 51346330 + 0 NA Intergenic Intergenic -148378 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.023 0.067 0.016 0.176 0.283 0.023 0.071 0.013 2.704 0.941 0.761 0.263 0.007 0.048 0.097 0.362 0.010 0.046 6.021 0.009 0.004 0.023 0.005 0.063 0.108 0.011 0.010 0.047 0.175 0.010 0.035 0.039 0.370 0.142 0.017 0.099 0.499 0.022 0.024 0.033 0.007 0.010 1244 chr20 42565122 42594211 + 0 NA intron (NM_001098798, intron 1 of 7) intron (NM_001098798, intron 1 of 7) 5130 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 0.295 1.394 0.030 0.645 0.878 1.582 0.736 0.311 1.916 0.753 0.732 1.100 2.928 0.462 3.028 2.298 0.394 3.167 0.326 0.048 1.500 1.113 0.036 1.280 1.845 0.315 0.183 0.295 4.676 0.718 0.353 0.633 1.616 0.762 7.190 1.166 0.993 1.408 2.012 5.206 0.883 0.859 1769 chr7 73114772 73140152 + 0 NA intron (NM_001165903, intron 1 of 9) intron (NM_001165903, intron 1 of 9) 1815 NR_036247 100422948 NR_036247 ENSG00000265724 MIR4284 mir-4284 microRNA 4284 ncRNA 0.745 1.284 0.123 1.349 2.846 3.479 3.214 0.588 5.741 4.655 4.822 2.257 3.033 1.401 0.931 5.459 0.395 2.902 0.858 0.099 1.066 1.084 0.339 3.924 1.293 0.869 0.449 1.326 2.999 4.919 5.236 3.671 2.357 3.230 4.172 2.015 1.027 1.312 2.042 3.331 1.588 1.509 1537 chr5 38591433 38616719 + 0 NA intron (NR_103554, intron 2 of 8) L2a|LINE|L2 -8569 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 0.271 0.335 0.269 0.863 1.303 0.343 0.396 0.325 3.300 0.721 2.290 0.901 0.356 0.539 0.278 1.139 0.084 3.283 0.047 0.038 0.891 0.265 0.105 0.480 0.247 0.062 0.059 0.527 0.142 0.342 0.143 0.205 0.676 0.919 0.857 0.367 0.284 0.458 0.881 0.284 0.071 0.085 435 chr12 48289417 48299882 + 0 NA intron (NM_001017535, intron 1 of 10) intron (NM_001017535, intron 1 of 10) 4165 NM_001017536 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D (1,25- dihydroxyvitamin D3) receptor protein-coding 1.165 0.511 0.113 1.418 3.957 2.903 2.770 0.705 3.808 1.838 3.280 0.758 0.328 1.362 1.511 1.692 0.450 0.576 0.316 0.040 1.212 0.750 0.071 0.313 2.598 0.382 0.283 1.020 2.646 0.648 3.603 1.615 1.724 2.222 0.903 0.768 0.547 1.026 0.700 0.427 0.281 0.184 492 chr12 116694738 116716639 + 0 NA intron (NM_015335, intron 1 of 30) intron (NM_015335, intron 1 of 30) 9303 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13 like protein-coding 0.741 0.740 3.713 0.052 0.564 0.147 0.483 0.149 1.469 0.726 0.660 0.198 0.140 0.219 1.056 0.476 0.435 0.563 0.391 0.373 0.309 0.307 0.549 0.245 0.702 0.661 0.377 0.231 1.087 2.046 0.911 1.284 1.067 0.645 0.413 0.396 0.500 1.276 0.586 0.206 0.605 0.619 1735 chr7 13052731 13120219 + 0 NA Intergenic Intergenic 359564 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.243 0.145 0.039 0.076 0.130 0.044 0.164 0.086 0.604 0.245 0.872 0.212 0.073 0.076 0.158 0.182 0.048 0.243 0.051 4.383 0.158 0.040 0.018 0.288 0.094 0.016 0.023 0.136 0.221 0.315 0.026 0.099 0.263 0.076 0.073 0.141 0.189 0.096 0.192 0.109 0.381 0.424 1894 chr8 124284857 124290136 + 0 NA promoter-TSS (NM_001204180) promoter-TSS (NM_001204180) 285 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 2.372 3.249 1.261 1.091 4.111 1.736 3.036 1.308 4.754 3.742 4.094 1.768 1.142 1.573 1.628 3.734 3.973 1.642 0.968 2.398 1.947 2.033 1.266 2.087 2.149 3.361 1.715 0.757 2.541 2.837 5.975 1.898 2.402 7.183 6.759 0.668 0.609 1.520 2.673 1.031 1.036 0.425 576 chr14 55555686 55599760 + 0 NA Intergenic HERVL32-int|LTR|ERVL -18212 NM_002306 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 2.100 0.397 1.614 0.674 2.104 0.057 2.742 1.668 7.739 3.169 3.692 1.573 0.773 2.384 2.112 1.970 0.624 1.063 0.147 0.041 2.939 2.700 0.131 3.316 0.332 0.314 0.207 3.147 3.046 1.130 0.705 0.522 3.894 3.483 1.305 1.414 1.993 0.487 1.350 1.514 0.140 0.077 1678 chr6 42368285 42377302 + 0 NA intron (NM_033502, intron 2 of 17) intron (NM_033502, intron 2 of 17) 46996 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 0.280 0.242 0.028 1.238 2.886 0.099 1.117 1.777 0.625 0.204 0.111 0.972 0.825 0.822 0.949 7.714 0.212 1.033 0.022 0.015 3.403 3.164 0.040 0.197 0.460 0.482 0.328 0.604 3.288 0.398 1.223 0.071 0.401 2.829 10.853 0.217 0.320 0.109 2.739 1.089 0.051 0.023 1331 chr22 30671590 30712085 + 0 NA intron (NM_031937, intron 3 of 8) intron (NM_031937, intron 3 of 8) -6221 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 GATSL3 CASTOR1 GATS protein like 3 protein-coding 0.892 1.019 0.351 0.953 1.600 0.318 0.473 0.325 nan 1.646 1.206 0.657 0.403 0.730 1.546 0.825 0.919 0.495 0.134 0.099 0.332 0.200 0.117 0.397 0.716 0.231 0.128 0.277 0.222 0.619 0.434 0.101 1.165 1.535 0.328 0.377 1.016 0.790 1.099 0.442 0.058 0.043 1792 chr7 99004681 99008174 + 0 NA promoter-TSS (NM_003910) promoter-TSS (NM_003910) -122 NM_014891 11333 Hs.632296 NM_014891 ENSG00000106244 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding 4.088 5.997 1.683 1.302 4.839 4.302 10.149 1.172 9.124 7.111 10.900 3.139 2.728 3.575 5.029 5.600 2.342 4.452 2.988 4.871 2.329 2.362 4.327 6.168 8.975 5.771 2.724 3.754 6.911 5.420 9.969 3.264 4.212 7.136 5.249 5.918 4.673 8.401 5.315 3.279 6.132 5.058 1471 chr4 26319726 26333574 + 0 NA intron (NM_015874, intron 1 of 10) intron (NM_015874, intron 1 of 10) 4221 NM_015874 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 2.258 1.456 0.636 1.589 4.682 1.267 1.962 0.991 2.301 1.379 1.109 1.139 0.980 1.147 1.056 2.875 0.551 0.703 0.486 0.711 0.785 0.792 0.670 0.666 3.126 1.954 0.956 1.466 2.117 0.935 2.405 0.841 0.674 4.246 3.208 0.667 0.681 1.908 1.312 1.042 1.119 0.689 132 chr1 151761855 151765251 + 0 NA promoter-TSS (NM_006862) promoter-TSS (NM_006862) -543 NM_001083963 11022 Hs.144439 NM_006862 ENSG00000182134 TDRKH TDRD2 tudor and KH domain containing protein-coding 1.878 0.545 0.422 0.697 2.868 0.474 2.935 1.276 18.194 17.546 1.894 0.843 0.846 1.680 1.274 1.721 0.649 0.685 0.931 0.451 1.046 0.571 1.369 0.305 2.002 1.121 0.783 0.498 0.670 1.496 2.364 5.143 4.959 2.493 1.658 0.723 2.584 2.900 1.091 0.405 0.390 0.194 258 chr10 74435135 74455408 + 0 NA Intergenic Intergenic -6618 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 2.472 1.191 0.997 0.560 1.773 0.183 2.399 1.084 3.330 1.768 0.866 0.535 0.378 1.428 1.606 2.243 0.792 1.455 0.538 0.207 2.800 2.440 0.272 2.066 0.677 0.450 0.387 1.426 0.562 4.188 0.564 0.728 2.040 2.783 3.521 1.668 1.113 0.470 1.548 0.369 0.176 0.105 1562 chr5 72699433 72735210 + 0 NA Intergenic Intergenic 27031 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 0.492 0.155 0.483 0.361 0.431 0.046 0.192 0.440 4.062 0.963 0.431 0.137 0.053 0.134 0.189 0.622 0.056 0.350 0.081 0.012 0.781 0.353 0.051 0.073 0.748 0.258 0.159 0.047 0.318 0.165 0.270 0.117 0.048 0.478 0.293 0.113 0.065 0.421 0.114 0.055 0.718 0.581 50 chr1 37935569 37953787 + 0 NA intron (NM_025079, intron 2 of 5) intron (NM_025079, intron 2 of 5) -1153 NR_106790 102465438 NR_106790 ENSG00000163874 MIR6732 hsa-mir-6732 microRNA 6732 ncRNA 5.415 5.976 0.936 1.424 3.302 4.134 2.425 1.729 6.812 3.867 3.677 2.362 1.050 3.668 3.326 4.756 1.436 2.197 1.066 0.253 2.165 2.392 0.989 3.325 9.522 2.705 1.133 1.736 4.383 3.707 2.581 1.274 2.346 2.252 2.686 1.325 1.307 1.848 1.126 2.945 0.803 0.524 247 chr10 45469500 45479491 + 0 NA promoter-TSS (NM_007021) promoter-TSS (NM_007021) -165 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 C10orf10 DEPP|FIG|Fseg chromosome 10 open reading frame 10 protein-coding 4.575 4.242 0.089 1.327 3.228 0.360 3.663 1.614 3.877 1.605 1.430 1.053 2.683 2.350 4.013 3.804 0.580 3.316 1.554 0.069 2.503 2.369 0.045 1.234 4.128 1.280 0.648 1.007 3.812 2.479 4.862 1.021 1.399 1.781 1.054 1.417 0.901 0.872 2.803 4.148 2.237 2.241 51 chr1 38271923 38275410 + 0 NA exon (NM_024640, exon 1 of 5) exon (NM_024640, exon 1 of 5) 193 NM_001142726 127687 Hs.532749 NM_198446 ENSG00000197982 C1orf122 ALAESM chromosome 1 open reading frame 122 protein-coding 3.984 4.513 0.780 0.706 2.783 3.964 3.511 0.541 5.293 5.071 3.498 1.134 0.952 2.070 3.164 3.903 1.318 2.321 3.141 2.345 1.426 2.041 2.922 2.219 5.768 3.199 1.581 1.015 3.176 3.655 5.562 1.587 1.889 5.447 3.537 7.104 3.653 9.107 1.305 1.985 2.653 1.610 1783 chr7 75155947 75165860 + 0 NA Intergenic Intergenic -3450 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 0.802 1.269 0.170 0.972 1.914 0.772 2.613 0.893 2.067 1.093 3.806 0.473 1.127 1.136 1.210 2.598 0.328 1.103 0.313 0.377 4.284 3.610 0.868 0.831 1.026 0.876 0.559 2.180 0.861 1.102 2.190 1.714 1.007 2.254 1.967 1.106 0.709 1.120 1.803 0.867 0.673 0.507 917 chr17 77762842 77792233 + 0 NA Intergenic CpG-11232 -6622 NM_020649 57332 Hs.387258 NM_020649 ENSG00000141570 CBX8 PC3|RC1 chromobox 8 protein-coding 0.832 1.623 0.404 0.404 0.964 0.329 2.004 0.706 9.482 4.296 0.951 0.696 0.281 0.453 0.571 1.689 0.355 0.525 2.137 1.395 0.468 0.255 0.744 1.333 1.772 0.345 0.260 0.227 0.574 2.842 1.563 2.691 1.638 1.439 0.737 0.541 1.987 4.878 0.221 0.596 0.221 0.116 1849 chr8 53294095 53306573 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 22105 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 0.029 0.075 0.015 0.016 0.151 0.035 0.055 0.050 0.289 0.071 0.052 0.128 0.009 0.044 0.054 0.061 0.022 4.513 0.280 0.016 0.023 0.018 0.056 0.059 0.024 0.043 0.036 0.206 0.256 0.064 0.031 0.063 0.080 0.215 0.029 0.048 0.023 0.026 0.027 0.014 0.004 1696 chr6 100725422 100753859 + 0 NA Intergenic Charlie8|DNA|hAT-Charlie 171911 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 0.920 0.211 0.017 0.480 0.995 1.689 0.913 0.657 1.969 0.727 1.580 0.897 0.706 1.341 1.015 1.551 0.205 2.380 0.042 0.029 1.268 0.734 0.069 0.601 1.098 0.726 0.394 1.392 0.390 0.652 0.407 0.534 0.587 0.490 0.693 0.576 0.278 0.690 1.479 0.687 0.851 1.031 187 chr1 172851812 172890024 + 0 NA Intergenic Intergenic 149185 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 1.275 0.415 0.011 0.442 0.847 0.191 0.457 1.461 0.671 0.162 0.169 1.116 0.569 0.789 0.204 1.868 0.160 2.972 0.028 0.015 0.981 0.358 0.129 2.709 0.617 1.076 0.624 0.308 1.294 0.488 0.164 0.097 0.314 0.820 0.455 0.406 0.078 0.143 0.424 0.966 0.457 0.423 598 chr14 69240698 69298142 + 0 NA Intergenic AluSx1|SINE|Alu -6460 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 3.168 1.585 2.011 0.581 0.942 2.630 3.683 2.242 6.536 3.377 5.467 1.685 2.401 1.559 2.481 1.735 0.798 1.517 0.987 1.506 3.857 4.430 0.430 1.095 2.158 2.065 0.923 2.540 4.495 2.083 2.808 2.110 2.028 0.848 1.608 1.076 1.772 2.535 2.775 4.318 3.599 3.786 861 chr17 41735897 41755894 + 0 NA Intergenic AluY|SINE|Alu -6633 NM_001040002 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 0.179 0.286 0.393 0.104 0.286 0.058 0.094 0.164 nan 0.515 0.610 0.044 0.088 0.038 0.544 0.314 0.646 0.225 0.085 0.049 0.370 0.183 0.254 0.202 1.614 0.075 0.094 0.102 0.510 0.433 0.111 0.063 0.169 0.289 0.071 0.139 2.483 3.617 0.241 0.119 0.040 0.030 453 chr12 57411083 57415751 + 0 NA Intergenic LTR49-int|LTR|ERV1 -3073 NR_135166 6866 Hs.9730 NM_013251 ENSG00000166863 TAC3 HH10|NKB|NKNB|PRO1155|ZNEUROK1 tachykinin 3 protein-coding 0.172 0.176 6.269 0.122 0.050 0.085 0.099 0.595 0.174 0.106 0.063 0.050 0.069 0.245 0.045 0.040 0.101 0.086 0.030 0.030 0.047 0.062 0.128 0.098 0.052 0.084 0.050 0.112 0.192 0.093 0.051 0.170 0.139 0.235 0.640 0.106 0.158 0.033 0.037 0.054 977 chr19 3357779 3370869 + 0 NA intron (NM_205843, intron 1 of 10) MIR|SINE|MIR -2241 NM_001245004 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 1.058 3.415 0.564 0.695 2.007 4.875 2.457 0.267 3.693 1.181 1.171 0.411 1.084 2.156 0.906 2.050 0.789 2.005 0.749 2.638 2.279 2.874 4.692 4.951 5.660 2.772 1.322 0.128 2.118 4.295 5.553 2.578 1.630 1.780 2.371 1.153 1.366 10.294 2.257 1.581 1.826 1.093 1302 chr21 38070015 38075875 + 0 NA intron (NM_005069, intron 1 of 10) CpG-17199 1512 NM_009586 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 2.949 0.621 0.042 0.453 0.921 0.162 1.221 1.964 1.611 0.155 0.074 0.566 0.037 7.416 0.343 0.850 0.907 0.017 0.214 1.353 1.072 0.263 1.288 9.593 7.175 2.848 0.014 0.269 2.570 0.936 1.531 3.289 0.957 0.016 0.938 2.046 1.244 0.041 0.026 0.079 0.017 249 chr10 49585098 49610457 + 0 NA intron (NM_139049, intron 3 of 13) L2a|LINE|L2 -11878 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 0.506 0.169 2.961 0.127 0.178 0.045 0.123 0.128 0.165 0.048 0.078 0.140 0.284 0.120 0.183 0.350 0.141 0.261 0.047 0.005 0.053 0.037 0.035 0.071 0.113 0.036 0.028 0.049 0.116 0.116 0.120 0.028 0.050 0.076 0.242 0.126 0.125 0.043 0.163 0.219 0.043 0.048 1662 chr6 33376819 33396974 + 0 NA promoter-TSS (NM_001014840) promoter-TSS (NM_001014840) -831 NM_001014837 51596 Hs.520070 NM_015921 ENSG00000112514 CUTA ACHAP|C6orf82 cutA divalent cation tolerance homolog protein-coding 1.719 2.620 0.636 0.471 1.552 2.283 0.892 0.761 2.829 1.500 1.934 0.857 0.733 0.502 1.188 2.186 0.557 1.122 1.073 2.002 1.399 1.315 1.002 1.623 3.316 1.721 0.975 0.479 3.185 1.597 3.972 2.590 1.039 2.177 2.512 0.469 0.649 3.844 1.059 1.598 1.613 0.967 385 chr11 128316682 128398284 + 0 NA intron (NM_001330451, intron 3 of 6) AluSc8|SINE|Alu 34722 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1.048 1.513 0.038 0.590 1.256 1.079 1.954 1.058 1.415 0.662 0.325 1.075 0.903 2.035 0.954 2.069 1.020 1.935 0.112 0.010 1.888 1.241 0.201 0.996 4.993 1.440 0.633 1.486 2.799 0.678 1.292 0.134 0.755 0.929 2.656 0.423 0.376 0.411 1.345 1.407 0.486 0.388 1582 chr5 138628332 138640279 + 0 NA intron (NM_001194956, intron 1 of 13) intron (NM_001194956, intron 1 of 13) 4866 NM_001194955 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 2.026 2.353 4.428 0.349 1.779 2.124 1.182 0.528 3.661 2.755 1.543 0.599 0.653 1.496 1.655 1.339 0.955 1.090 0.744 1.069 1.570 2.044 1.027 2.272 1.894 1.679 0.880 0.952 1.702 2.008 1.944 1.098 1.724 2.418 2.014 1.308 0.812 1.797 1.325 1.297 1.571 0.975 1350 chr22 45996227 46010096 + 0 NA Intergenic MER21C|LTR|ERVL -1634 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 1.399 3.211 0.065 0.939 1.239 3.568 0.687 1.335 1.388 0.260 0.246 0.863 0.628 1.695 0.591 1.193 0.235 0.880 0.022 0.020 2.522 2.459 0.070 0.311 1.657 0.478 0.208 1.034 10.413 3.394 0.387 0.398 1.069 0.996 0.567 0.502 0.390 0.085 0.685 1.218 3.899 2.966 264 chr10 103873168 103894821 + 0 NA Intergenic AluSg|SINE|Alu -3764 NM_001321612 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding 0.946 4.228 0.401 0.449 1.319 1.586 1.611 1.099 4.408 2.747 1.935 0.498 0.758 1.161 0.802 2.160 0.905 1.821 1.220 1.917 1.080 0.999 1.510 1.723 2.608 1.844 0.981 0.857 0.833 2.376 2.944 1.082 1.264 1.925 2.794 1.129 0.952 2.688 1.123 1.202 1.266 0.786 574 chr14 50372436 50382908 + 0 NA Intergenic L1PA17|LINE|L1 17936 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 1.088 0.819 1.078 1.286 3.142 0.623 1.605 1.611 4.053 1.571 2.676 3.257 2.235 2.487 0.938 4.393 0.817 2.448 0.057 6.290 5.779 0.126 0.926 1.031 1.515 0.833 1.963 2.850 1.192 1.197 0.219 2.218 3.716 4.615 0.925 0.700 0.472 2.256 2.865 0.467 0.466 1943 chr9 75744642 75772974 + 0 NA Intergenic Intergenic -7839 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 1.956 1.545 1.327 1.470 3.345 1.541 2.365 1.050 4.096 3.063 1.996 1.989 0.829 1.363 1.242 2.256 1.056 2.216 0.032 2.621 1.594 0.865 0.364 3.204 2.383 0.776 0.556 0.849 1.401 1.150 0.740 0.885 1.481 2.017 2.594 1.174 0.726 0.899 1.912 0.968 0.655 0.719 136 chr1 153597762 153601967 + 0 NA promoter-TSS (NM_001024213) promoter-TSS (NM_001024213) -120 NM_001024212 6284 Hs.516505 NM_005979 ENSG00000189171 S100A13 - S100 calcium binding protein A13 protein-coding 1.640 0.430 0.944 2.117 2.499 0.207 2.782 2.115 29.494 15.411 2.471 1.640 3.347 2.638 2.517 2.047 1.332 2.704 0.955 0.223 2.743 2.456 2.178 2.878 5.753 2.612 1.263 1.847 2.877 3.102 3.057 3.488 5.579 2.503 2.730 1.702 3.709 1.258 2.760 1.719 1.725 1.484 1985 chr9 138981845 139012204 + 0 NA Intergenic Intergenic -9893 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 0.779 2.026 0.300 0.387 1.831 1.136 3.201 0.426 7.929 3.163 1.073 0.709 0.440 0.471 1.035 0.745 1.046 0.673 1.153 0.616 1.027 1.262 1.506 2.556 1.946 1.349 0.771 0.570 0.580 3.238 3.506 0.990 1.247 1.550 1.426 0.672 1.311 2.794 1.189 0.707 0.848 0.431 957 chr18 55095670 55114970 + 0 NA intron (NM_004852, intron 1 of 1) CpG 2403 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 7.066 0.124 0.024 0.020 0.039 0.041 0.043 0.022 0.302 0.154 0.055 0.038 0.024 0.028 1.161 0.096 0.050 0.159 4.767 0.021 0.014 0.011 0.077 0.483 0.181 0.041 0.084 0.012 0.110 0.818 0.113 2.475 0.919 0.021 0.053 0.476 0.099 0.332 0.115 0.071 0.039 0.026 341 chr11 65623565 65630364 + 0 NA promoter-TSS (NM_025128) promoter-TSS (NM_025128) -908 NM_025128 80198 Hs.288798 NM_025128 ENSG00000172732 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 5.563 7.787 3.442 1.784 5.230 7.888 4.201 2.090 8.210 6.847 4.727 3.628 2.794 5.765 7.878 4.436 2.007 2.956 3.630 3.529 2.802 3.575 4.016 3.412 19.082 7.344 3.497 3.802 8.958 6.487 6.572 2.940 5.153 5.762 9.030 2.090 3.533 9.935 4.486 4.955 3.430 2.000 1994 chrX 12963597 12982280 + 0 NA Intergenic Intergenic -11519 NR_030727 349408 Hs.685035 NR_030727 ENSG00000233338 TLR8-AS1 GS1-324M7.6 TLR8 antisense RNA 1 ncRNA 1.003 0.857 0.339 0.765 1.471 0.333 1.140 0.797 1.610 0.705 1.487 0.966 0.549 0.844 1.286 1.082 0.456 4.109 0.129 0.022 1.369 1.132 0.227 1.047 0.962 0.999 0.514 1.148 1.722 0.998 1.107 0.310 1.137 2.143 0.422 0.655 0.620 0.499 1.276 0.827 0.207 0.108 1508 chr5 249105 256081 + 0 NA intron (NM_001294332, intron 12 of 13) intron (NM_001294332, intron 12 of 13) 19046 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 1.707 0.171 0.027 1.218 4.638 0.080 6.257 1.436 8.685 1.982 0.755 0.564 0.556 2.815 0.309 4.815 2.395 0.145 0.157 0.061 3.802 4.460 0.115 0.109 3.987 9.437 2.944 3.499 0.560 0.286 0.787 2.739 11.130 3.613 0.198 1.229 4.179 0.209 0.271 0.251 0.025 0.039 1236 chr20 34202457 34208448 + 0 NA exon (NM_001317931, exon 3 of 12) exon (NM_001317931, exon 3 of 12) 1646 NM_001317931 6676 Hs.123159 NM_003116 ENSG00000061656 SPAG4 CT127|SUN4 sperm associated antigen 4 protein-coding 5.649 3.605 0.188 1.392 5.006 4.338 2.198 1.117 nan 3.160 3.302 2.805 1.614 3.319 2.662 2.015 2.851 2.707 1.054 4.235 0.950 1.025 1.514 2.073 7.047 2.166 1.036 1.659 2.028 3.685 6.872 2.373 1.961 5.632 5.076 1.201 0.887 12.152 1.996 4.708 1.298 0.688 1250 chr20 43963665 43978792 + 0 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 5836 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 6.883 4.174 2.088 2.072 4.766 4.887 3.876 2.782 7.039 4.527 6.523 2.867 2.556 2.772 3.173 3.312 6.336 2.020 0.452 0.260 2.746 2.199 2.642 1.039 8.160 2.176 1.052 3.568 0.767 2.290 4.347 3.774 3.583 9.109 3.460 2.640 4.729 5.330 3.641 3.161 1.851 1.095 1271 chr20 52467454 52560695 + 0 NA Intergenic Intergenic -21826 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1.287 0.842 0.408 1.184 1.753 0.308 1.049 0.997 4.955 2.104 2.167 0.862 1.180 1.271 1.707 1.185 0.856 0.851 0.107 0.456 1.165 0.737 0.312 0.703 0.907 0.455 0.304 1.368 5.127 0.952 1.597 0.229 1.069 1.287 0.609 0.426 1.156 3.536 0.522 1.104 0.841 0.935 1808 chr7 103269886 103281370 + 0 NA intron (NM_173054, intron 19 of 63) intron (NM_173054, intron 19 of 63) -189004 NM_001167962 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 1.062 0.138 0.011 0.400 0.487 0.027 3.560 0.944 0.158 0.217 0.942 0.533 0.083 1.512 0.178 0.677 0.074 0.161 0.018 0.006 0.013 0.006 0.074 0.201 0.102 0.102 0.375 0.122 0.057 0.025 0.041 0.410 0.080 0.041 0.330 0.123 0.020 0.311 0.013 0.035 779 chr16 90084732 90090357 + 0 NA intron (NM_001286209, intron 1 of 10) intron (NM_001286209, intron 1 of 10) -1005 NM_001288708 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding 3.451 4.315 0.419 1.318 4.964 3.191 5.265 1.162 3.930 1.671 3.483 2.124 0.841 2.195 2.911 2.728 1.246 2.568 4.131 2.319 2.922 2.296 2.170 4.236 5.069 3.577 2.723 1.743 1.174 4.192 7.442 3.332 3.958 6.394 5.835 1.958 2.085 5.058 1.780 1.589 1.034 0.636 1436 chr3 177192472 177202730 + 0 NA intron (NR_047568, intron 1 of 3) LFSINE_Vert|SINE|SINE 37892 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 0.871 2.290 1.457 0.221 0.509 1.716 1.837 0.769 2.760 0.767 5.074 0.772 0.307 1.163 2.086 2.075 0.753 2.232 0.820 0.440 6.002 4.247 0.157 1.246 1.988 0.082 0.092 1.126 0.185 0.524 0.297 0.194 1.330 0.737 2.276 0.815 1.285 0.634 1.032 0.617 0.062 0.094 431 chr12 29532324 29535653 + 0 NA intron (NM_016570, intron 1 of 13) intron (NM_016570, intron 1 of 13) 155 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 3.333 4.575 2.398 1.533 4.147 1.159 5.409 0.908 5.080 5.077 4.197 0.438 8.609 1.806 4.263 2.656 1.550 3.410 1.207 0.583 2.042 1.819 0.597 1.544 1.797 1.430 0.633 1.865 4.144 1.956 2.935 1.403 3.178 7.298 2.361 1.800 1.464 2.661 1.920 6.641 1.020 0.536 192 chr1 183422316 183451835 + 0 NA intron (NR_040063, intron 3 of 4) intron (NR_040063, intron 3 of 4) 4042 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 1.499 1.219 0.399 0.931 1.782 0.576 1.706 1.597 2.485 1.388 2.185 1.355 0.412 2.315 2.142 2.135 0.528 0.736 0.375 0.722 1.980 1.550 0.644 1.627 1.108 0.997 0.402 1.471 0.904 1.049 0.597 0.613 1.844 2.024 1.761 1.700 0.993 0.719 0.766 0.671 0.592 0.334 419 chr12 15096332 15116595 + 0 NA intron (NM_001175, intron 1 of 5) intron (NM_001175, intron 1 of 5) -2378 NM_001321422 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 0.647 0.300 0.015 0.797 2.057 0.037 3.545 1.645 6.582 2.776 4.493 1.191 0.548 1.595 2.435 2.197 0.606 0.616 0.483 0.007 0.458 0.325 0.024 0.080 1.059 0.393 0.210 2.088 1.695 0.121 0.172 0.074 1.289 1.484 0.146 0.346 1.341 0.190 0.300 0.207 0.026 0.017 1567 chr5 92912874 92922328 + 0 NA promoter-TSS (NR_021491) promoter-TSS (NR_021491) -575 NR_021490 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 6.005 1.060 1.148 0.281 2.215 3.814 5.249 2.871 7.151 4.812 7.522 2.894 1.500 2.091 3.344 3.823 1.762 3.270 1.255 5.833 3.103 2.822 2.712 2.263 1.281 1.040 0.736 1.134 0.811 4.523 5.860 2.028 0.508 1.393 9.710 1.308 0.297 6.096 1.914 4.242 4.859 4.955 1913 chr8 144622374 144641787 + 0 NA Intergenic Intergenic -3477 NM_001166237 79792 Hs.118983 NM_024736 ENSG00000104518 GSDMD DF5L|DFNA5L|FKSG10|GSDMDC1 gasdermin D protein-coding 1.999 1.765 0.134 0.633 1.776 1.363 1.858 0.983 3.522 1.820 0.985 0.460 0.354 1.635 1.039 1.758 1.213 1.077 0.866 0.237 0.786 0.596 0.809 0.508 3.155 1.273 0.614 0.569 0.748 2.553 0.951 0.368 0.794 2.020 0.836 0.316 0.864 2.018 0.653 0.549 0.211 0.175 1648 chr6 30774435 30817138 + 0 NA intron (NR_130726, intron 1 of 1) intron (NR_130726, intron 1 of 1) 2650 NR_130726 401247 NR_130726 ENSG00000214894 LINC00243 C6orf214|NCRNA00243 long intergenic non-protein coding RNA 243 ncRNA 0.486 0.569 1.933 0.658 1.308 1.095 0.367 0.661 4.576 2.066 1.460 1.078 0.431 0.547 1.871 3.240 0.604 1.766 0.082 0.032 1.851 1.318 0.664 1.770 1.043 0.411 0.369 0.416 0.417 1.695 0.645 0.922 2.265 1.014 0.135 1.021 2.909 1.993 0.505 0.285 0.255 0.354 81 chr1 72746310 72757716 + 0 NA Intergenic Intergenic -3736 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 3.761 1.356 0.038 0.149 0.415 5.122 0.758 0.924 0.183 0.247 0.161 0.475 0.364 0.721 0.719 0.816 0.049 1.905 0.897 0.355 0.188 0.101 0.813 0.649 1.578 0.957 0.491 0.020 2.010 0.178 1.536 0.359 0.028 0.394 0.032 0.171 0.079 0.499 0.303 0.601 3.271 2.724 988 chr19 11842317 11850921 + 0 NA intron (NM_001297610, intron 1 of 2) intron (NM_001297610, intron 1 of 2) 3205 NM_017507 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 1.262 0.482 0.527 1.162 3.111 0.749 1.356 0.539 nan 1.511 1.317 1.051 0.381 1.079 2.053 2.001 0.578 0.162 0.445 0.646 2.154 1.748 0.154 0.075 1.670 1.024 0.667 1.756 1.134 1.319 2.387 1.512 0.796 4.537 0.464 0.591 0.998 1.062 4.052 0.540 0.787 0.468 1346 chr22 41679787 41699000 + 0 NA intron (NM_001317930, intron 1 of 15) AluJb|SINE|Alu -7138 NM_002883 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 3.454 2.838 1.044 0.676 1.627 4.435 4.082 2.012 5.530 2.854 1.491 1.107 1.076 1.602 3.347 3.414 0.835 1.528 0.798 0.560 1.246 1.307 1.417 1.542 6.650 4.975 1.909 1.083 1.849 1.564 2.757 2.066 2.139 2.608 3.731 0.713 1.336 4.872 2.559 1.732 0.937 0.515 1467 chr4 10166544 10189166 + 0 NA Intergenic Intergenic -59282 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 0.067 0.149 0.077 0.008 0.111 0.006 0.059 0.023 0.074 0.037 0.072 0.032 0.193 0.019 0.063 0.088 0.004 2.911 0.022 0.012 0.067 0.042 0.020 0.026 0.164 0.291 0.144 0.057 0.232 0.054 0.068 0.035 0.040 0.098 0.954 0.054 0.033 0.010 0.032 0.463 0.033 0.016 184 chr1 164713558 164763527 + 0 NA non-coding (NR_038072, exon 4 of 4) non-coding (NR_038072, exon 4 of 4) 5336 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 0.308 2.026 1.366 0.437 0.591 0.048 0.844 0.114 0.626 0.293 0.519 0.057 0.373 0.253 1.278 0.478 0.273 1.706 1.781 0.017 0.760 0.470 0.031 6.888 0.149 0.137 0.092 0.629 0.540 2.457 0.044 1.100 1.020 0.501 0.105 1.404 0.540 0.281 1.394 0.123 0.029 0.013 562 chr14 36957387 37000240 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 4177 NR_138599 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 0.107 0.045 8.451 2.830 7.426 0.022 8.960 3.652 16.524 9.117 11.164 2.289 2.633 7.904 0.051 7.691 0.007 0.041 6.607 0.026 3.367 4.829 0.024 0.061 0.058 0.054 0.058 8.379 0.118 0.101 0.090 0.057 0.059 5.165 10.597 0.038 0.095 0.535 2.725 0.021 0.023 0.006 923 chr17 78799567 78808609 + 0 NA intron (NM_001163034, intron 9 of 29) intron (NM_001163034, intron 9 of 29) -24656 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 0.625 2.800 0.032 1.904 1.990 0.778 0.901 0.664 1.671 0.474 0.494 2.520 2.467 2.037 0.258 3.744 0.074 2.070 0.509 0.030 2.386 2.417 0.050 1.962 10.142 1.000 0.433 0.686 3.923 1.123 2.578 0.437 2.317 2.580 2.162 0.570 0.730 0.962 1.363 2.757 0.771 0.606 659 chr15 80210125 80218114 + 0 NA promoter-TSS (NR_028330) promoter-TSS (NR_028330) -994 NR_028330 283687 Hs.722219 NM_175898 ST20-AS1 C15orf37 ST20 antisense RNA 1 ncRNA 1.699 1.665 1.080 1.682 4.897 1.953 1.576 0.724 2.919 2.255 1.346 2.826 0.489 1.188 1.363 1.504 0.647 0.832 0.875 0.935 0.667 0.898 1.233 1.018 1.730 1.282 0.624 0.652 1.052 2.660 1.816 1.155 1.339 5.255 1.169 0.950 0.859 1.873 1.423 0.987 0.441 0.265 1815 chr7 139526785 139532499 + 0 NA intron (NM_001130966, intron 5 of 16) intron (NM_001130966, intron 5 of 16) 690 NM_001166253 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 1.575 0.163 0.022 0.101 0.112 0.044 0.145 0.147 0.864 0.189 0.294 0.308 1.446 0.477 0.186 0.560 0.482 1.906 4.819 4.658 0.025 0.487 0.163 0.273 0.081 0.542 1.754 0.641 0.074 5.518 0.589 0.115 0.172 0.064 0.164 0.087 0.029 0.014 0.020 749 chr16 67875020 67882626 + 0 NA TTS (NM_020457) TTS (NM_020457) -1812 NM_001322038 10204 Hs.356630 NM_005796 ENSG00000102898 NUTF2 NTF-2|NTF2|PP15 nuclear transport factor 2 protein-coding 3.745 5.676 0.709 1.374 4.357 10.087 2.736 0.680 3.548 2.126 3.032 2.055 1.721 1.492 3.236 2.079 2.590 3.055 2.616 2.805 2.902 3.856 3.674 5.523 7.304 6.295 3.450 1.624 3.220 5.080 5.727 2.535 3.936 4.751 4.289 0.672 3.127 5.756 2.492 2.094 2.062 1.143 1931 chr9 32692771 32707521 + 0 NA Intergenic LTR78|LTR|ERV1 -64479 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 0.126 0.191 0.013 0.630 0.258 0.056 0.257 2.294 7.069 1.809 1.715 0.644 0.968 0.968 0.235 2.614 0.246 0.188 0.014 0.009 5.657 4.850 0.030 0.055 0.118 0.365 0.249 2.843 0.109 0.077 0.033 1.018 2.306 0.609 0.291 0.756 0.203 0.008 2.406 0.459 0.007 0.024 1572 chr5 132164789 132178240 + 0 NA Intergenic L1MC4a|LINE|L1 -4924 NM_001172700 134549 Hs.519574 NM_133456 ENSG00000164403 SHROOM1 APXL2 shroom family member 1 protein-coding 0.475 0.733 0.060 0.239 0.492 0.349 0.602 0.345 1.871 0.647 1.398 0.358 0.158 0.754 2.353 0.492 0.424 0.405 0.260 0.143 3.057 3.033 0.421 0.423 0.569 0.488 0.372 0.232 0.274 1.230 0.865 0.378 3.712 0.598 0.694 1.238 0.297 0.928 0.398 0.084 0.188 0.136 889 chr17 59311436 59345373 + 0 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 116661 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 0.087 0.245 0.336 0.034 0.143 0.032 0.112 0.065 0.401 0.149 0.121 0.095 0.115 0.058 0.087 0.182 0.028 3.287 0.020 0.754 0.102 0.055 0.102 4.449 0.101 0.107 0.083 0.075 0.258 0.408 0.159 0.112 0.244 0.109 0.055 0.123 0.334 0.068 0.121 0.042 0.032 0.019 603 chr14 75642290 75652666 + 0 NA Intergenic AluSz|SINE|Alu -4129 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 1.033 0.676 4.089 0.169 0.397 1.642 1.027 0.459 2.464 2.130 3.109 0.765 0.512 0.611 3.249 0.652 0.633 0.827 0.688 0.567 1.491 1.408 0.523 1.121 1.167 0.747 0.395 0.602 1.093 1.721 1.351 0.772 1.726 0.513 0.846 0.717 1.476 1.367 0.974 1.554 0.492 0.263 668 chr15 90573929 90619762 + 0 NA intron (NM_198526, intron 1 of 4) AluJb|SINE|Alu 46858 NR_036135 100422841 NR_036135 ENSG00000265871 MIR3174 - microRNA 3174 ncRNA 0.407 0.338 0.027 0.472 1.028 0.103 0.144 0.223 6.323 2.055 2.504 0.415 0.059 0.479 0.523 0.552 0.263 0.178 1.044 0.107 0.199 0.150 0.173 0.170 0.231 0.088 0.066 0.535 0.239 0.436 0.146 0.049 1.493 1.043 0.063 1.272 1.076 0.150 0.109 0.074 0.025 0.022 222 chr1 244325275 244329953 + 0 NA Intergenic Intergenic 111107 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 1.807 2.248 0.222 0.784 1.552 1.391 2.453 2.032 0.455 0.156 0.952 1.032 2.016 3.012 2.170 3.486 0.718 3.167 0.021 0.029 3.880 3.010 1.394 0.817 8.405 11.528 4.947 0.852 4.267 0.713 2.504 0.085 0.695 1.191 2.631 0.445 0.582 2.706 1.911 1.974 6.705 6.167 337 chr11 65336418 65345883 + 0 NA 3' UTR (NM_152832, exon 2 of 2) 3' UTR (NM_152832, exon 2 of 2) 1330 NM_001098784 23625 Hs.731854 NM_152832 ENSG00000176973 FAM89B LRAP25|MTVR|MTVR1 family with sequence similarity 89 member B protein-coding 3.757 4.568 0.767 1.454 4.035 3.796 2.939 1.662 9.043 6.414 3.706 2.931 2.397 3.819 3.866 3.108 1.361 2.593 2.874 2.995 2.515 2.804 4.003 2.275 11.880 4.798 2.444 2.084 4.138 4.716 7.220 1.594 3.116 4.183 6.173 1.834 3.143 7.044 1.982 3.240 1.681 0.852 1711 chr6 137534516 137563975 + 0 NA Intergenic Intergenic -8678 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 0.264 0.736 0.246 0.628 0.838 1.454 0.315 0.204 4.683 1.072 1.374 0.238 0.162 1.688 1.188 0.256 0.260 0.229 0.081 0.179 0.969 0.620 0.110 1.008 1.248 0.577 0.339 0.292 0.191 1.213 0.538 0.225 1.543 0.568 0.387 0.976 0.796 0.886 0.715 0.586 0.133 0.060 757 chr16 75296868 75307552 + 0 NA promoter-TSS (NM_001170715) promoter-TSS (NM_001170715) -259 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.138 3.245 0.463 1.095 2.789 4.635 1.370 0.543 1.931 1.285 1.291 1.201 1.100 0.937 1.294 1.727 1.582 1.777 1.832 0.558 1.799 1.849 1.616 0.915 2.984 3.145 1.619 1.137 1.703 2.891 4.269 1.628 1.630 2.365 3.344 0.545 1.167 3.220 1.149 1.047 1.972 1.133 1390 chr3 69809874 69822564 + 0 NA intron (NM_006722, intron 1 of 9) intron (NM_006722, intron 1 of 9) 3257 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|MI|WS2|WS2A|bHLHe32 melanogenesis associated transcription factor protein-coding 0.325 0.686 0.186 0.553 0.772 4.947 2.338 2.012 0.709 0.314 0.461 1.179 0.352 2.987 0.962 2.054 1.196 1.087 0.039 0.011 2.504 2.211 1.103 0.909 0.843 0.342 0.228 0.598 0.118 0.363 0.011 0.878 0.768 0.629 3.771 0.087 0.737 0.251 3.202 0.791 0.073 0.024 1433 chr3 176996624 177014018 + 0 NA Intergenic LTR78|LTR|ERV1 -6909 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 1.027 0.533 1.109 0.241 0.850 0.076 1.204 1.689 4.870 1.174 4.041 0.268 0.115 0.503 0.654 1.001 0.165 0.350 0.819 1.177 1.422 0.992 0.140 0.550 0.233 0.086 0.041 1.070 0.161 1.062 0.415 0.064 1.247 0.965 1.076 0.494 0.285 0.337 0.309 0.040 0.199 0.267 1972 chr9 128461352 128470872 + 0 NA intron (NM_001006617, intron 1 of 11) intron (NM_001006617, intron 1 of 11) 3401 NM_001006619 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 0.648 1.026 0.092 1.514 2.082 0.304 2.746 0.366 1.641 0.945 0.592 0.505 0.833 1.936 0.842 1.038 0.363 0.543 0.166 0.277 1.693 1.132 0.763 0.816 0.927 1.791 1.049 0.457 0.936 1.300 5.392 0.321 0.690 1.691 6.058 0.281 0.600 1.070 1.019 0.622 1.307 1.355 919 chr17 77862217 77910795 + 0 NA Intergenic LTR16A|LTR|ERVL -6650 NR_110851 101928738 Hs.399280 NR_110851 ENSG00000262188 LINC01978 - long intergenic non-protein coding RNA 1978 ncRNA 0.818 0.266 0.041 0.125 0.279 0.117 0.114 0.093 3.975 0.707 0.216 0.331 0.122 0.182 0.188 0.721 0.173 0.292 0.084 0.070 0.484 0.228 0.079 0.786 0.163 0.050 0.050 0.076 0.226 1.012 0.056 0.146 0.586 0.427 0.086 0.345 0.858 0.224 0.086 0.080 0.019 0.018 1405 chr3 138632062 138642915 + 0 NA Intergenic Intergenic 25374 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 0.983 0.659 0.075 0.715 1.080 0.920 1.711 0.904 1.960 1.184 2.161 1.099 1.025 1.146 1.100 3.767 1.401 1.348 0.315 0.217 2.272 1.829 0.409 0.679 1.628 0.754 0.515 1.435 1.872 0.906 1.746 0.378 2.119 1.269 4.845 0.441 0.841 1.514 2.262 1.157 0.488 0.441 906 chr17 73860823 73875774 + 0 NA Intergenic AluY|SINE|Alu 6358 NM_033452 91107 Hs.293660 NM_033452 ENSG00000132481 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 3.260 3.887 0.056 1.710 5.276 2.294 3.988 1.477 12.299 4.964 2.473 4.053 1.707 2.530 1.689 3.544 1.279 0.829 1.356 0.157 2.248 2.845 0.645 5.490 4.155 1.192 0.581 1.708 2.440 4.938 2.319 1.182 2.206 5.339 2.576 1.364 2.882 3.567 1.714 1.163 0.378 0.171 221 chr1 241992050 242022067 + 0 NA Intergenic L2a|LINE|L2 -4435 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 0.417 0.472 0.021 0.120 0.336 1.914 0.309 0.152 0.841 0.342 0.397 0.185 0.137 0.299 0.462 0.408 0.546 0.283 0.233 0.299 0.230 0.238 0.221 6.614 0.963 0.276 0.203 0.174 0.455 0.638 0.312 0.313 1.388 0.338 0.236 0.326 0.938 0.498 0.281 0.190 0.152 0.112 1812 chr7 137661714 137694104 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 8938 NM_001253775 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 1.097 1.294 0.145 0.659 1.312 0.251 1.163 1.274 5.445 1.817 3.348 0.491 0.263 1.667 1.117 0.690 0.230 1.491 0.130 0.060 0.791 0.513 0.324 0.598 0.563 0.289 0.157 1.732 0.577 0.548 0.434 0.570 1.263 1.526 0.400 0.585 2.124 0.310 0.695 0.304 0.103 0.041 1205 chr2 241517252 241527230 + 0 NA TTS (NR_103792) TTS (NR_103792) 3492 NR_103792 101752400 Hs.585987 NR_103792 ENSG00000260942 CAPN10-AS1 locus959 CAPN10 antisense RNA 1 (head to head) ncRNA 1.377 2.454 0.360 0.873 2.779 0.863 2.064 0.873 3.210 2.255 1.956 0.742 0.958 1.632 2.747 2.450 0.520 1.033 0.915 0.527 1.663 1.463 0.927 1.343 1.790 1.210 0.680 1.133 0.680 1.584 1.794 0.701 1.723 4.656 1.629 0.784 1.100 2.320 1.377 0.846 2.853 1.918 581 chr14 62125486 62138669 + 0 NA Intergenic AluSc|SINE|Alu -30042 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 0.988 1.272 0.047 0.916 1.410 0.400 0.882 1.890 3.390 1.017 1.816 2.114 1.909 2.251 1.501 3.879 0.255 1.930 0.068 0.021 3.964 2.686 0.078 0.949 0.203 0.310 0.154 0.502 2.302 0.377 0.216 0.419 1.680 1.758 3.620 1.309 0.179 0.164 0.867 5.284 0.017 0.015 525 chr13 45761951 45797689 + 0 NA intron (NM_004128, intron 4 of 7) AluSc|SINE|Alu -4645 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 1.777 1.996 0.069 0.727 1.510 0.282 0.314 0.779 0.660 0.244 0.242 0.472 0.765 0.770 0.465 0.530 0.235 0.620 0.031 0.016 0.690 0.434 0.047 0.485 3.039 0.936 0.476 0.369 4.320 0.091 0.252 0.267 0.160 0.875 0.237 0.147 0.085 0.135 0.641 1.110 0.669 0.581 15 chr1 8929125 8979016 + 0 NA Intergenic Intergenic -14919 NM_001428 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 1.624 1.905 1.599 0.839 2.427 1.987 3.141 0.866 nan 2.033 3.539 2.004 1.428 2.303 1.367 2.906 1.576 1.358 0.581 0.447 2.951 3.135 0.583 4.028 4.165 1.944 0.837 1.586 3.291 2.826 2.990 1.512 2.099 2.359 5.498 0.685 1.663 3.375 2.144 2.003 0.850 0.683 1135 chr2 70171475 70177096 + 0 NA Intergenic Intergenic 15112 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 0.821 0.455 3.237 4.420 1.523 0.979 1.989 11.974 5.363 1.624 3.412 1.443 3.679 2.287 6.869 0.034 1.535 0.017 0.008 1.646 1.299 0.156 0.872 0.372 0.504 0.296 1.091 0.766 0.623 0.384 0.323 5.742 3.102 1.862 5.245 3.732 0.279 1.056 2.263 0.360 0.280 388 chr11 129184303 129195915 + 0 NA Intergenic Intergenic -55772 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.444 0.141 0.374 0.526 1.218 0.027 0.678 1.450 8.501 2.439 2.086 1.408 0.041 0.854 1.000 2.265 0.258 0.143 0.897 0.024 0.308 0.156 0.152 0.291 0.207 0.062 0.033 1.835 0.234 1.458 0.103 0.176 8.173 1.994 0.144 2.858 8.040 0.064 0.110 0.019 0.025 0.009 217 chr1 234733811 234770281 + 0 NA Intergenic Intergenic -6775 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 4.470 4.412 0.976 0.901 2.281 2.325 4.072 2.451 6.411 3.915 4.926 1.713 1.162 3.376 3.529 2.369 1.169 3.130 1.450 2.846 2.845 3.091 0.899 3.416 3.610 1.366 0.711 2.270 8.392 3.837 2.133 4.288 4.785 2.864 3.781 1.361 1.954 2.843 2.401 1.973 2.927 2.567 731 chr16 51583292 51593416 + 0 NA Intergenic MIRb|SINE|MIR -208076 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 0.103 0.329 0.019 0.032 0.125 0.048 0.011 0.618 0.112 0.056 0.072 0.116 0.022 0.028 0.146 0.009 0.617 0.079 0.014 0.280 0.085 0.014 1.514 0.762 0.018 0.039 0.060 0.100 1.457 0.036 4.296 1.430 0.042 0.018 0.255 0.154 0.372 0.243 0.196 0.028 0.015 232 chr10 8089895 8104277 + 0 NA intron (NM_001002295, intron 1 of 5) CpG-2567 419 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 0.930 0.529 0.013 0.158 0.389 0.315 0.040 0.058 0.251 0.207 0.048 0.020 0.090 0.122 2.124 0.049 1.252 0.682 0.048 0.039 0.196 0.086 0.243 0.060 0.372 0.141 0.065 0.054 0.167 1.330 0.566 0.159 0.167 0.237 0.052 0.017 2.298 9.483 0.060 0.109 0.235 0.159 1645 chr6 28889064 28893320 + 0 NA exon (NM_006510, exon 1 of 8) exon (NM_006510, exon 1 of 8) 576 NM_006510 5987 Hs.440382 NM_006510 ENSG00000204713 TRIM27 RFP|RNF76 tripartite motif containing 27 protein-coding 4.594 5.444 1.226 1.429 6.639 7.129 3.952 1.710 7.318 6.415 6.660 2.982 2.016 3.380 4.942 4.843 1.137 2.568 2.976 2.815 4.336 6.378 1.334 3.506 6.603 6.393 2.527 2.410 2.272 3.762 8.986 7.674 4.539 8.262 8.533 2.686 3.563 7.188 4.060 2.464 1.339 0.943 585 chr14 65671592 65714139 + 0 NA Intergenic LTR78|LTR|ERV1 -3800 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 1.439 0.668 0.413 0.841 1.157 0.133 1.167 1.914 8.743 3.495 5.093 2.695 1.000 1.928 1.729 3.088 0.036 2.381 0.070 0.013 4.347 3.486 0.052 0.195 0.250 0.251 0.201 3.612 4.201 0.649 0.338 0.231 2.262 0.716 0.266 0.379 0.385 0.332 2.342 2.933 0.431 0.424 211 chr1 228268752 228276265 + 0 NA intron (NM_001024227, intron 1 of 4) intron (NM_001024227, intron 1 of 4) 1657 NM_001024228 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 3.898 5.347 1.100 0.882 3.041 2.256 3.986 1.906 6.017 4.417 3.839 1.223 0.852 3.402 3.893 2.684 1.299 2.341 1.059 1.575 2.984 3.236 2.259 4.609 5.670 4.383 2.023 1.535 2.811 4.094 3.245 2.700 3.269 5.039 2.042 2.117 2.065 4.331 2.944 1.685 1.625 1.022 1919 chr8 145043990 145051949 + 0 NA promoter-TSS (NM_201378) promoter-TSS (NM_201378) -272 NM_201378 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 6.218 4.945 0.265 0.815 2.694 1.347 2.765 1.187 4.686 3.128 1.638 1.778 1.294 1.826 2.684 2.268 2.716 1.452 1.123 0.714 1.766 1.620 1.414 0.849 2.759 1.872 1.326 0.270 2.539 3.790 4.789 1.466 1.378 2.624 1.298 0.693 2.549 3.724 0.350 1.131 0.716 0.340 1657 chr6 31758755 31765035 + 0 NA intron (NM_006295, intron 2 of 29).5 AluSx1|SINE|Alu 1817 NM_006295 7407 Hs.520026 NM_006295 ENSG00000204394 VARS G7A|VARS1|VARS2 valyl-tRNA synthetase protein-coding 5.518 3.763 1.253 1.631 5.914 4.802 2.436 2.063 5.525 4.827 3.356 2.076 1.280 2.835 4.127 7.427 1.246 2.661 1.979 3.797 2.886 3.475 1.372 3.845 8.022 5.582 2.501 2.687 4.178 2.758 7.498 3.118 3.122 7.030 7.138 1.931 2.182 8.127 4.469 2.506 3.154 2.264 1595 chr5 153744678 153752552 + 0 NA intron (NM_198321, intron 4 of 11) MIRc|SINE|MIR 21949 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 1.072 2.743 0.196 0.493 0.371 0.766 0.433 1.095 0.716 0.275 0.534 1.046 2.475 0.788 1.697 4.168 0.971 5.330 0.013 0.017 5.822 4.811 0.926 1.687 1.533 2.970 1.465 0.485 6.003 1.101 1.061 0.216 0.363 0.727 2.343 0.218 0.162 0.534 2.101 2.209 5.382 4.190 1365 chr3 12267757 12273949 + 0 NA Intergenic Intergenic -58496 NM_005037 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 0.372 0.513 6.456 0.646 2.031 0.021 3.282 4.155 4.195 1.392 4.527 1.132 0.573 1.571 0.310 2.429 0.106 1.162 0.066 1.483 0.816 0.012 0.052 0.119 0.010 1.445 0.113 0.251 0.127 0.025 0.827 4.748 0.098 0.871 0.924 0.056 0.927 0.605 0.028 0.016 569 chr14 38048145 38074154 + 0 NA exon (NM_004496, exon 2 of 2) exon (NM_004496, exon 2 of 2) 3176 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 4.975 2.806 10.567 1.540 5.342 2.670 2.686 2.747 26.331 21.470 8.314 2.300 1.351 3.830 4.264 2.898 0.158 1.956 2.811 2.567 3.898 5.092 0.056 5.189 0.577 0.990 0.417 3.833 0.156 3.412 0.767 3.489 6.356 5.469 8.792 2.742 4.652 0.757 0.118 0.090 0.031 0.016 1826 chr7 156792381 156812743 + 0 NA promoter-TSS (NM_001165255) promoter-TSS (NM_001165255) -433 NM_001165255 3110 Hs.37035 NM_005515 ENSG00000130675 MNX1 HB9|HLXB9|HOXHB9|SCRA1 motor neuron and pancreas homeobox 1 protein-coding 1.063 0.134 0.080 0.019 0.042 0.250 0.437 0.371 1.303 0.648 1.029 0.007 0.160 0.204 0.461 0.159 0.094 0.105 2.478 0.259 0.296 0.160 0.454 0.171 1.541 0.401 0.280 0.075 0.270 1.461 0.777 1.263 1.491 0.055 0.155 0.355 0.187 1.396 0.102 0.101 0.503 0.282 174 chr1 156864000 156871190 + 0 NA intron (NM_001080471, intron 1 of 22) intron (NM_001080471, intron 1 of 22) 4072 NM_001080471 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 0.329 1.257 0.633 0.573 1.333 0.492 1.461 0.231 0.056 0.078 0.526 2.087 0.850 1.260 2.996 0.332 1.987 0.129 0.019 2.451 1.925 0.705 0.619 5.998 13.183 5.344 0.453 4.828 0.770 2.204 0.032 0.385 0.271 1.416 0.205 0.217 1.131 1.754 0.158 10.629 8.959 1554 chr5 57110613 57140105 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 69630 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 1.449 0.453 0.059 0.375 0.771 0.079 0.733 2.459 0.383 0.154 0.365 1.512 0.412 0.995 1.175 1.605 0.935 0.893 0.020 0.005 1.139 0.653 0.231 1.326 2.639 2.418 1.184 0.454 6.191 0.558 0.275 0.179 0.166 0.465 0.154 0.679 0.360 0.251 0.742 0.861 5.169 5.268 1317 chr22 19158114 19167325 + 0 NA TTS (NM_001256534) TTS (NM_001256534) 3299 NM_001287387 6576 Hs.111024 NM_005984 ENSG00000100075 SLC25A1 CTP|D2L2AD|SEA|SLC20A3 solute carrier family 25 member 1 protein-coding 3.305 3.285 0.652 0.925 3.331 2.905 3.204 0.896 nan 4.121 2.895 1.022 0.700 1.339 2.506 0.838 1.285 1.851 0.706 0.874 0.948 0.869 2.347 2.834 2.891 2.226 1.258 0.806 1.443 2.435 4.913 1.997 2.465 3.617 2.097 1.504 1.462 4.881 2.286 1.526 0.694 0.513 769 chr16 88715973 88719293 + 0 NA promoter-TSS (NM_000101) promoter-TSS (NM_000101) -141 NM_000101 1535 Hs.513803 NM_000101 ENSG00000051523 CYBA p22-PHOX cytochrome b-245 alpha chain protein-coding 5.885 1.108 0.002 3.508 9.587 0.220 0.571 0.065 1.677 0.658 0.554 1.143 0.036 3.252 1.217 2.950 0.662 2.601 5.845 0.126 2.907 3.157 0.369 3.036 12.637 14.620 5.982 2.391 0.180 6.262 4.084 0.168 0.100 9.477 0.316 2.893 0.049 4.045 2.655 0.687 0.031 526 chr13 73628143 73689118 + 0 NA Intergenic HAL1|LINE|L1 25700 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 1.721 0.763 1.622 0.188 0.488 0.749 0.391 0.442 5.973 3.430 1.203 0.503 0.131 0.679 1.504 0.768 0.391 0.361 0.275 0.034 0.691 0.477 0.155 0.442 0.662 0.286 0.207 0.421 0.479 0.743 0.305 0.477 1.224 0.481 0.054 1.167 0.786 0.260 0.319 0.433 0.148 0.098 72 chr1 59245434 59253550 + 0 NA 5' UTR (NM_002228, exon 1 of 1) 5' UTR (NM_002228, exon 1 of 1) 293 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 4.588 5.077 1.841 1.613 4.712 2.489 5.796 1.963 nan 2.461 5.346 2.665 1.628 2.889 5.294 3.751 1.736 2.207 2.738 0.102 2.469 3.218 1.365 0.857 5.701 3.211 1.398 4.404 5.542 1.451 4.071 1.927 2.211 9.698 6.020 0.877 2.109 4.943 1.587 3.273 3.065 2.950 667 chr15 90538952 90553789 + 0 NA intron (NM_198526, intron 1 of 4) AluSx3|SINE|Alu 1647 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding 0.681 2.794 0.096 0.919 2.255 0.728 1.681 1.062 9.302 6.321 2.162 1.221 0.333 2.469 3.766 2.149 1.772 0.915 0.982 0.917 1.283 1.193 0.957 0.700 1.044 0.809 0.537 0.968 2.507 2.621 1.226 0.386 6.690 2.311 0.748 3.079 3.767 1.166 0.841 0.709 0.982 0.709 88 chr1 92073886 92080789 + 0 NA Intergenic Intergenic 110672 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 2.444 0.056 4.880 0.389 0.291 0.256 0.070 1.503 0.163 0.129 0.061 0.063 0.052 1.149 0.587 0.573 1.425 0.186 0.044 0.041 0.625 0.292 0.450 5.163 1.264 7.196 2.703 0.347 3.558 3.140 0.367 0.034 1.895 0.521 0.201 3.388 1.511 0.110 0.547 0.067 0.840 0.785 1131 chr2 47560842 47589814 + 0 NA Intergenic AluSp|SINE|Alu -3115 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 0.863 0.928 0.574 1.717 2.256 1.029 1.555 1.209 nan 1.618 1.415 1.674 1.250 1.074 0.882 3.816 0.468 0.595 0.323 0.309 1.540 1.214 0.130 0.627 0.459 0.323 0.169 1.646 1.949 2.100 0.228 0.547 1.201 1.919 1.577 0.545 1.086 0.617 1.472 0.221 0.596 0.532 1906 chr8 141466675 141475791 + 0 NA Intergenic Intergenic -2555 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 2.956 2.332 1.095 0.709 1.507 2.909 1.521 1.127 6.296 3.070 1.402 1.742 0.971 1.939 1.467 1.795 1.013 1.664 2.662 3.058 0.757 0.773 1.526 2.828 3.349 1.919 0.976 0.403 2.022 3.778 3.962 2.590 2.149 4.048 1.208 0.988 3.113 4.530 0.621 0.713 0.644 0.473 789 chr17 7153247 7157160 + 0 NA promoter-TSS (NM_001143775) promoter-TSS (NM_001143775) 56 NM_015343 23399 Hs.513913 NM_015343 ENSG00000175826 CTDNEP1 DULLARD|HSA011916|NET56 CTD nuclear envelope phosphatase 1 protein-coding 3.405 3.823 2.621 1.948 8.537 5.651 4.483 1.472 9.077 7.571 8.410 1.045 1.657 2.850 5.554 3.320 2.993 2.708 3.506 2.628 1.858 2.647 2.638 6.227 9.384 5.908 2.564 4.310 4.004 8.340 7.168 3.120 2.809 12.688 7.911 3.792 3.304 10.133 5.296 2.650 4.370 2.595 1025 chr19 39278313 39302235 + 0 NA Intergenic L1ME2z|LINE|L1 10424 NM_001042507 653499 Hs.558355 NM_001042507 ENSG00000178934 LGALS7B GAL7|Gal-7|HKL-14|LGALS7|PI7 galectin 7B protein-coding 0.603 0.241 0.298 0.935 1.926 0.048 0.838 0.737 5.398 2.221 1.151 0.745 0.425 0.484 0.416 1.769 0.198 0.383 0.083 0.046 0.913 0.484 0.180 0.154 0.193 0.789 0.485 0.998 0.159 1.065 0.284 1.226 0.744 2.950 0.147 0.486 0.696 1.071 0.263 0.034 0.019 0.015 1270 chr20 52345127 52452499 + 0 NA Intergenic AluSz6|SINE|Alu 93435 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1.723 1.340 0.979 0.876 1.568 1.189 1.460 1.107 3.819 1.700 2.559 0.973 1.416 1.460 3.189 1.802 1.992 0.783 0.081 0.931 2.097 1.733 0.772 1.450 3.901 1.911 0.920 1.185 4.474 1.770 1.565 0.496 1.313 1.490 1.474 0.567 1.778 5.646 1.293 1.297 1.130 0.987 1019 chr19 37281577 37289811 + 0 NA Intergenic Intergenic -2758 NR_040027 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 0.044 0.585 1.491 1.793 5.180 0.008 0.106 0.116 1.281 0.860 0.300 1.264 0.057 0.040 0.140 0.507 0.222 0.042 0.087 0.017 0.631 0.475 0.045 0.461 0.553 0.841 0.539 0.218 0.818 0.174 2.468 0.048 0.016 7.409 0.315 0.015 0.080 0.536 0.691 0.546 0.362 827 chr17 35764668 35768703 + 0 NA promoter-TSS (NM_001291918) promoter-TSS (NM_001291918) 217 NM_198834 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 11.442 5.542 0.401 1.409 4.314 8.199 5.195 1.781 4.659 1.936 2.619 1.220 2.190 3.201 3.218 3.676 2.373 1.827 1.166 3.088 3.069 3.523 2.942 5.527 6.981 4.413 2.185 1.975 5.176 6.742 3.671 3.310 3.719 6.457 4.490 2.088 3.943 7.377 3.404 2.060 3.278 2.039 434 chr12 46119385 46127475 + 0 NA promoter-TSS (NM_152641) promoter-TSS (NM_152641) -62 NM_152641 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|p200 AT-rich interaction domain 2 protein-coding 4.584 4.736 6.351 2.002 6.466 4.431 5.891 2.308 8.588 7.120 6.986 2.114 2.202 2.845 4.733 3.634 2.279 2.258 2.417 3.788 3.099 4.107 2.822 5.606 5.878 6.012 2.576 2.475 6.929 6.168 12.376 4.023 4.435 6.517 6.474 1.905 4.593 7.055 2.801 2.784 3.764 2.758 735 chr16 54954857 54973551 + 0 NA promoter-TSS (NM_001252197) promoter-TSS (NM_001252197) -907 NM_005853 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 0.726 1.959 0.231 0.010 0.113 0.290 3.462 0.441 1.872 1.107 3.339 0.842 2.293 3.432 0.866 0.186 2.486 0.626 0.942 0.681 4.059 5.227 0.508 0.561 1.795 1.506 0.784 0.259 0.147 1.520 1.368 3.752 3.503 0.206 1.447 0.052 0.691 1.791 4.033 3.621 0.453 0.304 409 chr12 11800596 11823235 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 9127 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 1.671 1.331 0.397 0.485 1.416 1.224 1.975 0.546 5.009 1.906 1.557 0.350 0.603 0.934 1.498 0.899 0.617 1.708 1.067 0.832 1.392 1.491 0.413 0.594 1.433 0.990 0.409 1.162 2.442 1.919 2.137 0.691 0.926 1.795 1.005 0.329 0.853 2.725 0.932 0.730 1.320 1.015 1992 chrX 10530693 10559456 + 0 NA promoter-TSS (NM_001193277) promoter-TSS (NM_001193277) -117 NM_001193277 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 0.791 0.209 0.071 0.225 0.464 2.548 0.101 0.058 0.459 0.162 0.304 0.119 0.025 0.038 0.259 0.167 0.453 1.105 0.021 0.034 0.280 0.118 0.792 1.559 0.058 0.055 0.057 0.144 0.097 1.702 0.064 0.562 0.876 0.630 0.051 0.442 0.799 0.204 0.190 0.045 0.555 0.567 1378 chr3 49936022 49945031 + 0 NA non-coding (NR_134919, exon 1 of 20) non-coding (NR_134919, exon 1 of 20) 544 NM_002447 4486 Hs.517973 NM_002447 ENSG00000164078 MST1R CD136|CDw136|NPCA3|PTK8|RON macrophage stimulating 1 receptor protein-coding 4.866 1.125 0.929 1.836 4.500 3.688 9.509 5.106 10.205 4.120 2.263 3.458 1.272 4.340 4.741 5.746 3.539 0.460 2.749 0.046 2.500 3.064 0.230 0.220 9.098 5.634 2.334 2.653 0.210 2.336 0.590 2.445 3.875 4.674 4.650 3.182 3.519 1.190 3.503 2.821 0.198 0.169 1036 chr19 41767014 41774733 + 0 NA promoter-TSS (NM_001321211) promoter-TSS (NM_001321211) -82 NM_001301016 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 7.145 7.451 1.913 2.436 7.132 6.278 6.467 1.571 nan 4.929 5.985 2.653 3.634 3.603 4.814 3.434 3.470 4.031 2.534 2.856 3.855 5.862 6.327 4.183 10.304 6.468 2.116 2.990 6.032 11.095 13.851 3.135 3.073 9.517 2.209 3.487 3.671 6.242 1.582 3.186 3.840 3.044 11 chr1 7350876 7363109 + 0 NA intron (NM_015215, intron 5 of 22) L2a|LINE|L2 -474337 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 2.266 0.942 0.015 0.093 0.026 0.135 0.184 0.009 nan 0.046 0.029 0.060 0.988 0.542 0.032 1.445 0.560 2.648 0.114 0.334 2.002 1.937 1.244 4.465 2.283 0.670 0.396 0.237 7.910 1.751 1.801 0.503 0.632 0.065 0.091 1.134 0.260 1.532 1.725 1.436 2.370 2.158 579 chr14 61112478 61125334 + 0 NA Intergenic Intergenic -2751 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 1.119 0.815 0.377 0.295 0.778 0.737 1.654 1.246 4.728 2.027 2.912 1.206 0.773 4.270 0.962 1.294 0.505 1.379 0.771 1.806 5.240 5.191 0.418 0.770 0.760 1.587 0.842 0.353 3.513 1.608 2.312 1.416 0.781 0.762 0.604 1.192 1.339 2.479 0.572 0.579 0.681 0.544 243 chr10 34972275 35030799 + 0 NA intron (NM_001184785, intron 1 of 24) intron (NM_001184785, intron 1 of 24) 102716 NM_001184794 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.399 0.866 0.220 0.379 0.672 2.055 0.315 0.485 0.839 0.212 0.437 0.225 0.787 0.546 0.324 1.547 0.181 2.456 0.026 0.033 1.396 0.880 0.099 0.459 0.156 0.166 0.139 0.697 0.247 0.796 0.145 0.513 0.692 0.743 9.395 0.634 0.449 0.155 0.585 0.584 0.191 0.122 1403 chr3 129306186 129326811 + 0 NA intron (NM_015103, intron 1 of 35) intron (NM_015103, intron 1 of 35) 9084 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 2.523 2.366 0.136 0.018 0.159 0.085 0.299 0.189 3.884 2.232 0.479 0.211 0.775 0.222 0.406 2.400 1.418 0.728 2.399 0.128 2.489 2.531 0.337 0.251 0.312 0.346 0.216 0.089 0.136 1.551 0.637 0.053 0.551 0.199 0.250 0.065 0.142 1.003 0.487 0.315 0.226 0.082 697 chr16 4815501 4819690 + 0 NA promoter-TSS (NM_021646) promoter-TSS (NM_021646) -376 NM_001303450 26048 Hs.513316 NM_021646 ENSG00000103199 ZNF500 ZKSCAN18|ZSCAN50 zinc finger protein 500 protein-coding 4.079 4.907 0.370 0.634 2.554 3.034 2.882 0.980 7.279 5.468 1.936 1.491 0.734 1.699 3.607 3.271 1.095 2.056 0.928 0.731 2.512 2.628 2.036 2.444 2.839 2.043 1.059 1.541 1.664 4.328 2.667 2.673 9.872 1.942 2.805 1.519 2.079 4.091 1.976 1.155 0.962 0.585 692 chr16 3069155 3075236 + 0 NA TTS (NM_001002017) TTS (NM_001002017) -1825 NM_001347703 79228 Hs.412304 NM_024339 ENSG00000131652 THOC6 WDR58|fSAP35 THO complex 6 protein-coding 13.458 11.793 3.038 2.632 6.920 9.521 11.069 2.258 10.752 11.533 6.367 5.278 4.541 3.930 6.628 7.528 4.074 4.865 0.776 2.483 6.535 11.985 6.055 5.711 14.239 9.976 2.991 8.128 12.904 7.212 6.183 5.759 3.919 9.262 6.185 2.591 4.289 9.925 9.469 7.803 9.635 7.626 1652 chr6 31146830 31156520 + 0 NA Intergenic Harlequin-int|LTR|ERV1 -5999 NR_026816 100130889 Hs.670091 NM_001134284 ENSG00000204528 PSORS1C3 NCRNA00196 psoriasis susceptibility 1 candidate 3 (non-protein coding) ncRNA 4.910 0.216 0.038 0.069 0.154 4.719 0.077 0.022 0.263 0.117 0.445 0.031 0.012 0.150 0.111 0.167 0.038 0.392 0.061 0.029 0.999 0.773 0.007 0.092 1.120 0.054 0.049 0.048 0.312 1.803 0.119 0.187 0.217 0.099 0.257 0.037 0.103 0.139 0.076 0.024 0.020 1993 chrX 10564310 10604881 + 0 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) 4079 NM_000381 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 0.914 0.456 0.596 0.688 1.280 2.554 0.957 0.637 0.902 0.569 0.708 0.634 0.259 0.566 0.719 0.473 0.349 3.291 0.012 0.007 1.316 0.884 0.374 1.713 0.766 0.282 0.167 0.478 0.851 1.236 0.240 0.746 1.189 1.484 0.474 0.557 0.936 0.255 0.672 0.488 2.934 3.169 386 chr11 128772044 128780200 + 0 NA promoter-TSS (NM_145013) promoter-TSS (NM_145013) 4 NR_045767 219833 Hs.689860 NM_145013 ENSG00000174370 C11orf45 - chromosome 11 open reading frame 45 protein-coding 0.388 0.938 0.053 0.534 0.545 0.008 1.394 1.063 0.895 0.307 0.088 0.861 0.722 1.746 0.250 1.541 0.668 1.204 0.012 0.017 0.930 0.631 0.849 0.417 0.990 0.946 0.527 0.724 9.335 0.749 0.721 0.212 0.596 0.252 0.046 0.150 0.327 1.187 1.148 2.509 0.042 0.009 1571 chr5 131823541 131837060 + 0 NA Intergenic Intergenic -3835 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 2.635 4.110 2.298 1.438 3.387 4.410 2.316 1.760 5.116 2.359 2.703 1.776 1.334 4.118 2.154 2.899 1.766 3.407 1.107 0.083 2.971 2.943 1.531 2.237 4.915 3.018 1.353 2.550 4.799 4.309 3.501 2.231 2.999 3.009 3.191 1.631 1.969 3.397 1.749 2.277 3.012 1.903 1245 chr20 42643618 42651098 + 0 NA intron (NM_001098798, intron 3 of 7) intron (NM_001098798, intron 3 of 7) 72822 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 0.143 0.489 0.033 0.406 0.355 0.126 0.308 0.099 0.416 0.110 0.178 0.567 1.498 0.306 0.512 1.506 0.165 1.944 0.645 0.018 0.642 0.264 0.029 0.106 0.464 0.360 0.335 0.118 0.875 0.199 0.455 0.248 0.444 0.208 6.090 0.261 0.098 0.217 1.386 2.320 0.094 0.060 983 chr19 7450956 7465743 + 0 NA Intergenic FLAM_C|SINE|Alu -1650 NM_015318 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 1.659 0.538 2.633 0.749 2.426 2.194 1.104 1.376 3.252 1.758 1.539 0.978 0.536 1.629 1.721 2.959 0.460 0.440 0.318 0.234 0.904 0.601 1.120 0.159 3.448 2.955 1.289 1.502 0.514 1.117 1.262 0.616 1.614 3.848 2.324 0.835 1.873 1.322 1.694 1.631 1.231 0.576 1289 chr21 17101477 17104105 + 0 NA intron (NM_013396, intron 1 of 23) CpG 447 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 4.054 2.034 5.627 0.798 4.871 2.623 4.037 1.481 8.959 6.602 5.323 0.735 1.486 2.184 4.879 2.676 1.914 0.773 2.070 1.628 1.936 3.274 3.087 1.226 10.186 6.035 8.750 2.193 4.339 4.829 2.404 3.696 6.505 6.528 1.212 2.717 5.255 1.500 1.205 0.701 0.616 1746 chr7 26233137 26245635 + 0 NA intron (NM_031243, intron 1 of 11) intron (NM_031243, intron 1 of 11) 1027 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 7.934 3.755 2.150 0.653 2.994 4.586 6.393 1.327 7.393 6.264 6.820 1.342 2.035 2.212 6.479 1.863 3.064 1.852 2.317 4.712 2.770 3.740 2.180 4.567 7.024 3.446 1.436 2.826 5.350 4.285 2.743 2.728 3.019 3.360 5.056 2.033 2.308 5.246 3.773 2.893 3.343 2.503 1889 chr8 116677005 116682921 + 0 NA intron (NM_001282903, intron 1 of 6) intron (NM_001282903, intron 1 of 6) 276 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 4.162 0.984 0.450 0.898 3.527 1.882 2.174 0.354 4.938 1.398 0.503 3.402 1.008 0.738 2.106 2.186 5.419 3.101 0.083 8.904 2.507 2.320 1.184 0.211 0.543 1.602 0.936 0.737 5.483 0.482 3.462 2.411 4.836 4.173 0.016 0.808 3.440 1.686 1.055 0.991 0.195 0.189 913 chr17 76966342 77009533 + 0 NA 3' UTR (NM_001159772, exon 6 of 6) 3' UTR (NM_001159772, exon 6 of 6) -11876 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 1.217 1.618 0.075 0.614 1.738 1.608 0.827 0.451 7.669 2.678 1.247 0.813 0.627 0.899 0.876 2.690 0.387 1.016 0.624 0.176 0.890 0.728 0.390 1.351 1.071 0.621 0.319 0.452 1.088 1.020 0.692 0.431 2.020 1.346 0.566 1.436 2.499 1.051 0.486 0.667 0.369 0.209 293 chr11 6338625 6345123 + 0 NA promoter-TSS (NM_145040) promoter-TSS (NM_145040) -134 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 3.887 3.031 0.267 2.018 3.074 0.088 3.383 1.747 0.345 0.175 0.122 1.975 1.127 2.358 0.126 5.548 0.514 1.612 0.266 0.018 3.959 5.621 0.079 0.734 12.192 1.070 0.505 1.085 13.300 0.956 0.165 3.014 1.576 3.359 5.918 0.716 0.242 0.938 5.539 7.991 2.366 1.831 1790 chr7 98922449 98929993 + 0 NA intron (NM_006409, intron 1 of 9) MIRb|SINE|MIR 2725 NM_001190996 10552 Hs.124126 NM_006409 ENSG00000241685 ARPC1A Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L actin related protein 2/3 complex subunit 1A protein-coding 2.963 3.167 0.932 1.407 3.206 0.864 5.269 1.789 4.631 2.546 3.354 1.610 1.498 3.075 3.986 4.406 0.961 2.928 0.797 0.846 1.751 1.613 1.255 3.107 4.157 2.572 1.130 1.918 5.539 2.486 5.106 0.984 2.300 2.448 4.207 2.740 4.296 2.668 2.638 1.785 1.206 0.890 1251 chr20 44399826 44423575 + 0 NA intron (NM_080614, intron 4 of 6) L2a|LINE|L2 8847 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 2.590 2.298 0.368 2.605 5.087 1.592 3.582 2.873 4.278 1.651 2.124 3.956 4.301 3.242 2.972 5.460 0.767 1.008 0.223 0.163 2.010 1.820 0.263 1.317 6.787 0.717 0.375 4.062 3.637 0.626 3.246 0.208 2.390 3.293 13.680 0.619 3.107 2.401 4.383 4.324 3.014 3.378 1891 chr8 119906835 119930152 + 0 NA Intergenic Intergenic 45890 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 0.105 1.499 0.021 0.658 0.995 0.314 0.760 1.387 2.894 0.928 2.131 1.393 0.375 0.693 0.644 0.765 0.077 0.621 4.996 0.030 0.453 0.127 0.019 0.341 0.586 0.738 0.642 0.372 1.810 0.230 0.082 0.081 0.098 0.440 0.107 0.146 0.245 0.142 0.693 0.368 0.151 0.082 629 chr15 41074400 41094472 + 0 NA intron (NM_018163, intron 1 of 10) intron (NM_018163, intron 1 of 10) -14838 NM_001258421 84936 Hs.121676 NM_032850 ENSG00000166140 ZFYVE19 ANCHR|MPFYVE zinc finger FYVE-type containing 19 protein-coding 0.255 0.419 0.784 1.405 2.679 3.200 1.141 0.781 8.482 4.475 2.179 1.261 0.229 1.012 1.550 2.434 0.769 0.863 0.140 0.055 1.249 0.867 0.156 0.847 0.115 0.105 0.086 1.016 0.399 0.703 0.643 0.288 6.899 2.773 0.392 2.372 1.305 0.172 0.625 0.802 0.149 0.144 400 chr12 6975152 7001319 + 0 NA intron (NR_135083, intron 2 of 3) L1PB1|LINE|L1 -4910 NR_002803 283345 Hs.720698 NR_002803 ENSG00000240370 RPL13P5 RPL13-2|RPL13L|RPL13_4_1199|RRPL13L ribosomal protein L13 pseudogene 5 pseudo 1.990 1.531 0.725 0.701 1.753 1.875 2.915 1.532 3.512 1.925 2.379 0.521 0.822 1.537 1.961 1.715 0.558 1.242 0.742 0.581 2.847 2.963 0.636 1.842 1.379 0.989 0.537 2.966 3.014 5.534 3.671 1.946 1.927 2.110 1.274 0.886 0.831 4.736 1.013 0.677 1.005 0.641 1920 chr8 145132251 145138831 + 0 NA TTS (NR_106906) TTS (NR_106906) 764 NR_106906 102465510 NR_106906 ENSG00000178896 MIR6847 hsa-mir-6847 microRNA 6847 ncRNA 5.904 5.099 0.780 1.228 4.530 3.155 4.320 1.699 6.107 5.390 2.667 2.750 1.802 2.743 6.154 3.626 2.407 2.118 1.815 3.917 2.045 2.371 2.411 2.891 4.063 5.122 2.967 1.060 4.330 4.327 5.885 2.298 2.602 3.751 2.038 1.457 2.753 7.312 1.584 1.801 2.430 1.542 1520 chr5 10593417 10602866 + 0 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 33706 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 0.717 0.839 0.066 2.553 3.462 0.927 1.552 1.799 2.055 0.377 0.465 1.149 0.678 1.542 0.504 3.608 0.930 2.424 0.063 1.826 1.083 0.734 1.477 2.391 3.441 1.651 1.330 0.729 1.427 1.621 0.800 0.644 5.212 3.553 0.451 0.962 0.922 2.133 0.431 0.628 0.423 1304 chr21 40269105 40304440 + 0 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 23581 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 0.329 0.131 0.079 0.124 0.287 0.040 0.296 0.065 4.628 1.472 2.201 0.235 0.090 0.419 0.452 0.194 0.361 0.216 0.234 0.012 0.823 0.347 0.056 0.062 0.116 0.059 0.027 0.260 0.229 0.638 0.058 1.587 2.081 0.488 0.071 1.221 1.083 0.103 0.248 0.060 0.024 0.016 1800 chr7 100485507 100495481 + 0 NA intron (NM_001302622, intron 2 of 4) (CAGA)n|Simple_repeat|Simple_repeat 3047 NM_015831 43 Hs.154495 NM_000665 ENSG00000087085 ACHE ACEE|ARACHE|N-ACHE|YT acetylcholinesterase (Cartwright blood group) protein-coding 1.295 1.524 1.060 0.572 1.665 1.901 5.045 0.740 3.999 2.737 4.924 0.836 1.050 0.940 1.497 2.112 0.968 1.147 0.491 0.432 0.546 0.672 1.133 2.212 2.750 0.605 0.530 2.093 1.398 2.035 4.833 1.374 1.405 1.541 1.794 1.841 2.118 6.008 2.419 0.685 1.064 0.745 819 chr17 29287201 29299667 + 0 NA Intergenic L1M4|LINE|L1 -4522 NM_001184992 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 0.693 2.689 0.729 1.715 3.134 1.562 1.406 0.918 0.809 0.425 1.675 0.658 0.796 1.463 1.303 1.629 0.545 0.916 0.065 0.601 3.365 3.341 0.741 5.502 1.271 0.731 0.407 0.796 6.476 3.866 1.202 1.433 1.821 2.577 0.908 0.818 1.342 2.308 1.652 0.574 0.453 0.316 1047 chr19 44122173 44131121 + 0 NA 3' UTR (NM_145296, exon 9 of 9) 3' UTR (NM_145296, exon 9 of 9) -2633 NM_182498 126299 Hs.99093 NM_182498 ENSG00000131116 ZNF428 C19orf37|Zfp428 zinc finger protein 428 protein-coding 1.829 2.223 0.716 0.850 2.566 1.684 1.604 0.360 nan 1.274 2.069 0.699 0.661 0.571 1.162 0.412 0.505 0.854 1.155 0.182 0.805 0.795 1.559 0.780 2.280 0.659 0.392 0.247 0.552 2.018 5.286 1.085 0.948 2.703 0.444 0.630 1.061 1.924 0.748 0.640 0.953 0.484 309 chr11 46256912 46271695 + 0 NA Intergenic Intergenic -34886 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 0.798 3.129 0.582 0.344 0.621 1.327 0.957 1.211 4.697 2.677 1.259 0.613 1.232 0.722 1.497 3.233 0.247 1.948 0.688 2.047 1.617 1.328 0.970 1.469 3.378 4.629 1.939 0.420 4.900 1.740 2.696 3.239 0.956 0.506 4.623 0.266 0.323 2.728 2.026 2.691 1.743 1.268 685 chr16 2056666 2066562 + 0 NA Intergenic AluSx|SINE|Alu -1792 NM_178167 90850 Hs.343828 NM_178167 ENSG00000167962 ZNF598 - zinc finger protein 598 protein-coding 2.154 3.642 0.076 0.634 1.902 1.544 2.052 0.321 5.848 2.888 1.409 0.740 0.802 1.245 1.881 2.272 0.558 1.400 1.047 0.601 1.926 1.791 1.271 4.589 1.492 1.386 0.890 0.985 1.008 5.288 1.952 1.926 3.527 3.843 1.851 1.257 2.032 2.594 1.754 1.152 0.989 0.689 943 chr18 9822649 9839242 + 0 NA intron (NM_006868, intron 5 of 6) L1ME3B|LINE|L1 -54778 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 0.341 1.566 1.062 1.211 2.299 3.670 1.594 0.939 3.807 1.240 3.805 1.094 0.632 1.168 1.912 1.704 1.635 1.646 0.121 0.025 1.382 1.173 0.092 1.634 4.173 0.355 0.239 1.277 1.050 2.317 0.672 2.879 3.120 4.567 2.321 1.108 3.737 2.438 1.212 0.824 0.229 0.169 1469 chr4 26192372 26203273 + 0 NA Intergenic L1MB8|LINE|L1 -123510 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 0.284 0.159 0.011 0.918 0.978 0.398 0.357 0.636 1.341 0.560 0.298 1.047 2.566 0.646 0.266 4.119 0.052 0.868 0.046 0.013 1.129 0.659 0.028 0.049 0.613 0.454 0.223 0.749 2.844 0.068 0.790 0.088 0.134 0.281 2.488 0.112 0.045 0.995 0.428 0.454 0.951 0.921 1960 chr9 113016074 113021805 + 0 NA promoter-TSS (NM_003329) promoter-TSS (NM_003329) -19 NM_001244938 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 3.048 7.394 0.940 1.969 5.157 4.144 7.673 1.322 5.244 3.836 4.043 1.683 1.296 2.242 6.872 6.486 1.583 4.543 0.503 1.452 6.421 8.988 2.741 14.370 7.649 5.398 2.125 1.311 8.219 7.829 4.738 2.612 4.991 5.444 2.453 4.029 2.498 4.735 3.203 2.905 2.449 1.696 1865 chr8 74216186 74285477 + 0 NA intron (NR_125388, intron 3 of 5) intron (NR_125388, intron 3 of 5) 17865 NR_125388 101926926 Hs.640090 NR_125388 ENSG00000250295 RDH10-AS1 - RDH10 antisense RNA 1 ncRNA 0.167 0.152 0.038 0.199 0.353 0.240 0.379 0.277 5.307 1.484 1.049 0.205 0.162 0.409 0.413 0.869 0.026 2.143 0.482 0.020 0.796 0.368 0.061 0.251 0.231 0.187 0.082 1.103 0.300 1.219 0.156 0.894 3.321 0.210 0.077 0.510 1.304 0.095 0.141 0.142 0.026 0.019 354 chr11 67391067 67400966 + 0 NA intron (NM_001243750, intron 2 of 3) L2c|LINE|L2 1392 NM_181843 254552 Hs.433329 NM_181843 ENSG00000167799 NUDT8 - nudix hydrolase 8 protein-coding 0.512 0.899 0.246 0.193 1.168 0.694 0.777 0.245 3.260 1.107 1.605 0.267 0.169 0.354 0.934 0.525 0.231 1.365 0.441 0.289 0.334 0.219 0.645 0.493 2.145 0.695 0.410 0.396 0.463 1.423 1.460 1.862 0.828 1.611 2.139 0.473 0.711 12.137 1.179 0.361 0.262 0.144 1656 chr6 31700903 31715862 + 0 NA non-coding (NR_037846, exon 2 of 29) non-coding (NR_037846, exon 2 of 29) 657 NR_037846 100532732 Hs.647011 NR_037846 ENSG00000255152 MSH5-SAPCD1 MSH5-C6orf26 MSH5-SAPCD1 readthrough (NMD candidate) ncRNA 4.416 4.445 1.180 1.155 3.893 5.354 2.619 2.426 7.748 3.890 4.806 1.915 1.734 1.597 2.791 5.652 1.112 2.700 3.627 2.162 2.818 3.223 0.601 3.583 5.802 4.165 1.804 1.986 6.236 2.487 5.321 2.800 1.717 5.279 4.772 0.955 1.429 5.656 2.464 2.446 2.749 1.564 1625 chr6 15244599 15250253 + 0 NA TTS (NR_120502) TTS (NR_120502) 1220 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 3.288 4.072 1.899 0.839 4.295 2.314 2.492 1.227 4.871 4.428 4.700 1.728 1.550 1.159 5.686 1.504 1.910 2.653 1.020 3.851 2.327 2.393 1.279 1.825 5.860 2.898 1.421 1.298 2.495 3.625 5.504 2.117 3.218 6.720 3.755 1.421 2.895 6.453 2.398 2.712 1.375 1.353 1958 chr9 110497970 110522352 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -258160 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 1.133 1.378 0.028 1.711 2.700 0.343 2.934 1.131 5.525 2.157 1.037 1.836 1.005 1.910 1.674 4.285 0.658 2.239 0.057 0.023 1.652 1.342 0.152 1.269 3.427 3.024 1.199 1.598 1.305 0.778 1.230 0.847 1.465 1.999 1.907 0.968 0.879 0.448 1.169 0.417 0.094 0.069 1064 chr19 47351688 47383570 + 0 NA Intergenic Intergenic -13377 NM_021575 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 sigma 1 subunit protein-coding 1.783 2.409 0.360 0.268 1.008 2.137 1.058 0.406 nan 0.747 3.210 0.541 0.868 0.375 1.926 1.378 1.612 2.263 0.558 0.461 0.780 0.676 1.601 1.765 1.893 1.040 0.505 0.473 0.944 2.149 1.182 1.749 1.060 1.092 2.222 0.635 1.415 1.281 1.194 1.119 0.904 0.744 1074 chr19 49136114 49142642 + 0 NA intron (NM_001352, intron 1 of 3) intron (NM_001352, intron 1 of 3) 1429 NM_001352 1628 Hs.414480 NM_001352 ENSG00000105516 DBP DABP D-box binding PAR bZIP transcription factor protein-coding 4.650 6.003 1.700 1.305 3.638 3.997 3.281 1.277 8.775 5.138 5.526 1.447 0.847 1.652 4.557 2.037 3.659 3.206 2.934 5.275 1.345 1.391 2.101 1.913 5.834 1.362 0.950 0.668 1.301 6.432 4.348 4.766 2.867 5.686 2.866 1.816 4.327 4.791 1.447 1.919 1.769 1.661 1743 chr7 20251766 20292072 + 0 NA Intergenic Intergenic 14719 NR_134567 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 3.787 0.622 0.716 0.438 1.124 0.209 2.639 1.527 4.527 2.133 3.168 0.942 0.525 1.631 1.791 0.574 0.310 1.931 1.715 0.010 0.198 0.104 0.192 3.749 0.117 0.144 0.093 1.419 2.976 0.087 0.057 0.069 0.463 0.904 0.244 0.649 0.625 0.091 0.200 1.042 0.121 0.037 13 chr1 8758484 8779882 + 0 NA intron (NM_001042681, intron 1 of 22) AluY|SINE|Alu 108516 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 0.720 1.096 2.623 0.208 0.857 4.546 0.914 0.318 nan 2.946 2.137 0.539 0.320 0.582 0.873 0.492 0.465 2.035 1.934 1.223 0.382 0.199 0.988 0.277 1.059 0.332 0.155 0.521 0.500 0.993 0.767 1.846 0.942 1.060 3.373 0.588 1.855 1.034 0.501 0.374 0.092 0.035 1528 chr5 33438499 33443783 + 0 NA non-coding (NR_047676, exon 1 of 20) non-coding (NR_047676, exon 1 of 20) 259 NM_001258438 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 3.098 3.442 1.080 3.457 9.765 3.880 4.998 2.520 12.064 10.283 6.909 2.859 2.143 2.577 5.434 5.398 2.515 4.097 2.092 4.272 2.565 2.383 1.424 5.474 4.042 8.045 3.707 3.094 2.321 3.038 3.773 3.232 2.103 8.314 4.933 2.727 2.426 4.257 4.677 2.322 3.509 2.539 1786 chr7 77419260 77429735 + 0 NA intron (NM_032936, intron 1 of 1) intron (NM_032936, intron 1 of 1) 3250 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 1.146 0.954 0.563 0.375 0.868 0.745 2.010 0.573 3.687 1.906 5.880 0.599 0.632 1.032 1.241 1.139 0.551 1.593 0.460 0.514 0.481 0.386 1.478 1.095 1.614 0.920 0.461 0.614 1.752 1.666 3.022 0.961 0.844 1.104 1.278 0.843 1.053 2.129 1.190 0.980 0.808 0.473 718 chr16 28830732 28837036 + 0 NA promoter-TSS (NM_148416) promoter-TSS (NM_148416) -485 NM_148415 11273 Hs.460499 NM_007245 ENSG00000168488 ATXN2L A2D|A2LG|A2LP|A2RP ataxin 2 like protein-coding 7.323 8.710 2.446 1.142 4.378 6.770 6.210 0.838 7.197 5.644 4.366 1.694 1.233 3.086 6.317 2.899 1.869 3.194 8.912 3.764 3.786 5.196 3.742 5.659 6.232 4.243 1.545 3.061 4.455 5.553 5.695 3.010 5.349 5.495 5.331 2.141 2.336 6.464 3.632 2.483 3.006 1.545 1923 chr8 145741803 145750620 + 0 NA intron (NM_014665, intron 3 of 3) intron (NM_014665, intron 3 of 3) 2862 NM_001272036 9684 Hs.459391 NM_014665 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 5.693 4.645 0.488 0.922 3.590 4.305 4.249 1.190 6.081 3.685 3.141 1.535 1.101 1.215 4.996 2.668 0.806 1.359 2.400 0.519 1.801 2.061 1.299 2.335 1.112 2.735 1.375 0.235 2.563 3.478 1.737 2.472 2.102 3.440 2.465 0.970 2.404 0.739 1.229 1.323 1.951 0.864 1234 chr20 32365632 32392741 + 0 NA exon (NM_001282933, exon 15 of 15) exon (NM_001282933, exon 15 of 15) 19719 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 3.639 0.898 0.325 0.758 1.490 0.171 1.745 1.195 nan 2.185 2.822 0.943 0.534 0.822 2.452 1.383 1.225 0.546 0.074 0.061 0.844 0.645 0.112 0.185 1.342 0.625 0.338 2.873 0.493 0.684 0.281 0.342 1.779 2.350 1.422 0.784 2.095 0.223 1.143 0.730 0.227 0.197 39 chr1 28665675 28698148 + 0 NA Intergenic L2b|LINE|L2 -14182 NM_001048183 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 2.219 0.632 0.753 0.840 1.521 0.499 1.531 1.385 4.095 1.057 1.479 1.045 0.259 0.845 0.802 1.812 0.620 0.742 0.416 0.341 1.060 1.018 0.433 0.712 0.884 0.569 0.298 0.788 0.992 1.064 0.964 0.696 1.069 1.144 1.467 0.586 0.699 1.197 0.644 0.427 0.250 0.133 471 chr12 66211241 66232413 + 0 NA exon (NM_003484, exon 2 of 4) exon (NM_003484, exon 2 of 4) -1073 NR_026825 204010 Hs.558686 NR_026825 ENSG00000241749 RPSAP52 RPSA_17_1251 ribosomal protein SA pseudogene 52 pseudo 4.575 2.923 0.070 0.803 2.205 1.573 2.895 1.682 2.253 1.805 2.052 1.662 2.554 1.752 2.764 2.528 0.021 4.169 0.834 4.353 0.921 1.204 0.053 0.095 4.499 2.046 0.849 1.935 7.823 2.134 3.786 1.143 0.056 1.623 4.642 0.480 0.113 2.795 1.380 2.871 5.642 6.667 1752 chr7 39987684 39995318 + 0 NA intron (NM_003718, intron 1 of 13) CpG-24238 1542 NM_003718 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 8.360 4.935 1.425 0.871 3.565 3.548 7.898 1.657 7.489 8.167 8.010 1.183 1.618 2.142 6.916 2.604 3.378 1.584 1.917 3.759 2.789 3.554 2.159 2.960 5.429 2.717 1.302 3.164 4.465 4.397 4.967 2.918 3.155 4.375 4.065 1.748 3.456 5.850 3.614 2.666 1.806 1.279 1063 chr19 47285333 47306109 + 0 NA Intergenic Intergenic -3879 NM_005628 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 2.633 2.960 0.466 0.456 1.628 0.770 1.719 0.666 nan 2.854 4.502 0.688 1.352 1.212 2.849 1.558 1.759 2.680 0.737 0.704 0.659 0.679 1.101 1.359 3.118 1.626 0.773 0.551 1.424 2.935 1.217 1.612 1.193 1.538 1.515 1.559 1.640 1.534 0.768 1.017 2.310 1.993 117 chr1 150975632 150982440 + 0 NA 5' UTR (NM_001163260, exon 1 of 10) 5' UTR (NM_001163260, exon 1 of 10) 237 NM_001163260 55793 Hs.743952 NM_018379 ENSG00000143409 FAM63A MINDY-1 family with sequence similarity 63 member A protein-coding 3.179 2.401 0.466 1.532 2.969 1.770 0.881 1.086 21.541 12.825 2.391 1.944 1.926 3.408 2.691 4.466 0.745 2.180 1.709 1.259 2.830 1.933 0.974 2.693 2.184 1.406 0.858 0.563 1.023 2.712 3.157 8.709 9.067 2.481 2.625 1.772 3.043 2.014 1.913 1.012 2.663 1.838 1683 chr6 44224213 44233551 + 0 NA intron (NM_004556, intron 3 of 5) L2a|LINE|L2 -3255 NM_001286511 347734 Hs.182885 NM_178148 ENSG00000157593 SLC35B2 PAPST1|SLL|UGTrel4 solute carrier family 35 member B2 protein-coding 3.245 2.776 0.597 0.827 2.576 1.944 1.045 0.766 2.492 1.590 1.663 0.801 1.003 1.374 1.389 1.485 0.466 0.677 0.996 1.060 1.373 1.150 0.963 1.367 5.228 3.539 1.895 0.531 2.243 1.621 4.597 2.321 0.982 2.545 1.581 0.457 1.146 4.597 0.593 0.766 0.866 0.663 284 chr11 504308 508534 + 0 NA intron (NM_203387, intron 1 of 10) CpG 400 NM_203383 6050 Hs.530687 NM_002939 ENSG00000023191 RNH1 RAI|RNH ribonuclease/angiogenin inhibitor 1 protein-coding 3.674 5.136 1.713 0.942 4.681 2.780 3.682 1.569 7.075 5.565 4.524 1.212 1.908 1.840 2.458 5.158 0.917 2.443 1.764 2.928 2.555 4.069 3.864 2.907 6.453 7.254 3.106 1.658 4.053 3.872 4.308 3.565 2.383 9.298 6.133 2.146 2.302 7.176 3.282 2.472 2.875 2.021 318 chr11 62338375 62343162 + 0 NA intron (NM_001404, intron 1 of 9) intron (NM_001404, intron 1 of 9) 692 NM_001404 1937 Hs.144835 NM_001404 ENSG00000254772 EEF1G EF1G|GIG35 eukaryotic translation elongation factor 1 gamma protein-coding 2.727 3.612 1.402 1.263 2.980 2.792 2.141 1.660 6.606 3.251 2.921 3.026 1.473 2.204 5.485 5.301 1.784 3.530 2.555 1.772 2.357 2.557 2.159 3.873 5.716 7.094 3.439 1.973 4.363 2.782 3.264 2.489 1.854 2.388 4.319 1.454 2.271 3.013 4.150 2.359 2.033 1.097 509 chr12 125088223 125126215 + 0 NA Intergenic Intergenic -55209 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.347 0.278 0.274 0.751 1.014 0.070 0.164 0.417 3.812 0.779 0.363 0.935 0.099 0.313 1.844 2.212 0.412 0.608 0.093 0.058 0.583 0.286 0.338 0.782 0.172 0.116 0.127 0.353 0.618 2.184 0.298 0.136 1.039 1.273 0.105 2.179 0.940 0.445 0.187 0.123 0.088 0.073 874 chr17 46547280 46612452 + 0 NA Intergenic Intergenic 28406 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 0.292 0.658 0.065 0.562 0.758 0.056 0.117 1.200 nan 1.409 0.853 0.319 1.363 0.907 0.615 2.322 0.067 0.887 0.118 0.139 1.445 0.885 0.079 0.104 2.402 0.943 0.544 0.391 3.193 0.894 1.543 0.141 0.445 0.539 1.207 0.161 0.975 0.229 0.334 1.323 3.209 2.664 1177 chr2 201932280 201938205 + 0 NA intron (NM_001321626, intron 1 of 12) AluSp|SINE|Alu 1109 NM_001321626 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 2.820 1.885 0.511 0.894 2.448 7.321 2.196 1.045 3.121 3.138 2.380 1.285 1.132 1.315 2.391 2.142 0.646 1.493 0.855 1.053 1.575 1.633 0.678 1.865 2.312 1.661 0.957 1.149 1.228 1.058 1.591 1.068 1.010 1.661 2.847 0.473 0.862 1.316 1.377 1.827 1.225 0.920 261 chr10 87400078 87407546 + 0 NA intron (NM_017551, intron 13 of 15) intron (NM_017551, intron 13 of 15) 66324 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 0.709 1.320 1.070 1.043 1.229 5.103 3.134 1.896 2.212 1.702 1.511 1.116 1.642 1.442 1.780 3.506 0.664 1.994 0.080 0.018 3.108 3.025 0.208 0.573 4.546 1.613 0.780 2.423 0.334 2.169 0.049 0.692 1.410 2.117 6.494 1.081 1.259 2.899 1.244 0.685 2.074 1.879 489 chr12 110474686 110499313 + 0 NA intron (NM_207435, intron 4 of 4) LTR2B|LTR|ERV1 18501 NM_207435 400073 Hs.44817 NM_207435 ENSG00000174456 C12orf76 - chromosome 12 open reading frame 76 protein-coding 0.670 0.684 1.042 0.631 1.078 1.761 1.109 0.866 2.162 1.402 1.455 0.653 0.608 0.757 0.577 2.032 0.127 0.682 0.134 0.135 2.304 1.941 0.467 0.840 0.624 0.511 0.288 1.222 1.141 1.290 0.692 0.839 1.546 2.041 2.502 0.285 0.862 1.075 0.938 0.436 0.327 0.254 82 chr1 77998209 78009582 + 0 NA intron (NM_174858, intron 13 of 13) AluJb|SINE|Alu 144448 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 0.220 4.548 0.016 0.724 0.447 0.288 1.719 0.548 0.422 0.126 0.134 1.032 1.793 0.853 2.079 4.821 1.310 4.429 0.209 0.036 3.433 2.929 0.497 2.187 8.033 1.614 0.735 0.683 10.215 0.462 0.757 0.422 1.261 0.594 0.612 0.216 0.102 0.310 2.697 2.790 5.394 4.965 332 chr11 65041642 65049007 + 0 NA intron (NM_002689, intron 5 of 17) intron (NM_002689, intron 5 of 17) 16001 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 1.118 1.440 0.665 0.772 1.273 0.300 0.572 1.595 0.275 0.207 0.347 0.575 0.905 1.239 0.852 1.552 0.075 1.542 0.246 0.038 0.966 0.446 1.754 0.249 2.138 5.665 2.228 0.344 1.114 0.630 1.002 0.011 0.364 0.582 1.821 0.508 0.057 0.418 0.700 0.824 1.699 1.009 1714 chr6 138148497 138154696 + 0 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -36729 NM_006290 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 0.127 0.969 0.050 2.545 5.614 0.133 4.608 3.209 1.596 0.418 0.665 0.930 1.478 5.793 1.977 2.787 0.356 1.928 0.032 0.112 2.321 2.014 0.023 0.851 1.771 0.306 0.206 3.710 0.418 0.056 0.108 0.013 0.443 2.174 0.051 0.577 0.147 0.356 0.946 0.593 0.102 0.032 903 chr17 73628272 73644337 + 0 NA exon (NM_001162995, exon 2 of 3) exon (NM_001162995, exon 2 of 3) 3629 NR_028439 643008 Hs.528605 NM_001162995 ENSG00000204323 SMIM5 C17orf109|PP12104 small integral membrane protein 5 protein-coding 2.980 0.393 0.128 1.015 2.196 0.428 1.035 1.424 8.725 4.000 5.019 1.427 0.896 1.291 0.564 1.868 0.999 0.193 0.985 0.043 0.554 0.460 0.183 0.287 0.263 0.270 0.176 1.063 0.259 2.490 0.297 1.489 1.044 6.118 0.098 0.989 4.773 0.330 0.627 0.052 0.749 0.449 1110 chr2 19806063 19813994 + 0 NA Intergenic Intergenic -251656 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transciption factor 1 protein-coding 0.287 1.351 0.032 0.951 0.711 0.141 0.161 0.039 0.271 0.040 0.100 0.110 0.803 0.344 2.323 1.541 0.024 4.339 0.583 1.493 0.939 0.010 0.367 0.568 0.175 0.128 0.212 11.868 0.616 0.045 0.336 0.208 0.402 0.109 0.571 0.116 0.103 0.919 0.212 11.152 13.283 1112 chr2 25695742 25706457 + 0 NA intron (NM_001256308, intron 9 of 17) MLT1J-int|LTR|ERVL-MaLR -135640 NR_135490 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 0.078 0.255 3.541 0.038 0.130 0.029 0.102 0.010 0.815 0.180 0.398 0.156 0.044 0.133 0.051 0.712 0.430 0.019 0.013 0.163 0.111 0.034 0.120 0.199 0.017 0.106 0.158 0.137 0.052 0.051 0.119 0.194 0.069 0.069 0.284 0.060 0.051 0.057 0.086 0.009 134 chr1 151848042 151885266 + 0 NA intron (NM_053055, intron 2 of 5) intron (NM_053055, intron 2 of 5) 15707 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 0.421 0.364 0.125 0.510 0.991 0.626 0.345 0.311 9.778 4.338 0.363 0.557 0.286 0.249 0.702 0.835 0.107 0.411 0.210 0.044 0.438 0.259 0.150 0.541 0.362 0.275 0.218 0.122 0.266 0.372 0.308 1.263 2.044 0.610 0.454 0.586 0.898 0.549 0.598 0.075 0.063 0.032 1748 chr7 27202504 27221106 + 0 NA TTS (NR_046609) TTS (NR_046609) 2150 NM_018951 3206 Hs.110637 NM_018951 ENSG00000253293 HOXA10 HOX1|HOX1.8|HOX1H|PL homeobox A10 protein-coding 1.242 0.078 2.869 0.297 0.437 0.044 0.132 0.009 0.533 0.254 0.362 0.047 0.114 0.040 0.693 0.169 0.686 0.983 0.129 7.211 0.314 0.178 0.717 2.792 4.893 0.201 0.105 0.371 0.328 1.046 1.722 0.314 0.210 0.670 1.867 0.098 0.515 1.032 0.378 0.045 4.591 3.811 300 chr11 10913528 10931458 + 0 NA Intergenic Intergenic 42729 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 1.730 1.263 2.044 1.069 1.474 0.824 1.353 1.323 6.855 2.313 3.202 1.051 1.019 1.033 1.916 3.132 0.658 1.536 0.125 0.015 1.726 1.706 0.061 1.251 3.443 0.522 0.252 1.224 2.023 1.235 0.549 0.348 1.725 2.000 3.474 1.189 1.487 0.477 1.895 2.035 0.665 0.706 163 chr1 155566773 155581788 + 0 NA Intergenic L1ME3B|LINE|L1 -5681 NR_046295 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MST misato 1, mitochondrial distribution and morphology regulator protein-coding 0.575 0.760 1.536 0.841 1.862 0.533 0.845 1.029 2.287 1.063 1.563 0.720 0.684 0.862 0.416 1.569 0.147 0.729 0.526 0.379 1.041 1.005 0.484 0.961 0.715 0.639 0.398 1.043 0.404 0.616 0.846 0.442 0.480 5.317 0.884 0.448 0.646 1.870 1.473 0.294 0.364 0.270 1081 chr19 50864298 50875438 + 0 NA promoter-TSS (NM_004851) promoter-TSS (NM_004851) -781 NM_004851 9476 Hs.512843 NM_004851 ENSG00000131400 NAPSA KAP|Kdap|NAP1|NAPA|SNAPA napsin A aspartic peptidase protein-coding 0.480 0.203 0.056 1.096 2.487 0.386 4.951 1.747 4.747 1.742 8.162 0.631 0.719 2.716 0.629 3.120 0.240 0.529 0.379 0.125 2.028 2.291 0.158 0.313 0.796 0.315 0.172 3.208 0.224 1.077 0.536 0.485 0.379 1.838 2.313 0.416 0.415 0.728 1.838 0.183 0.450 0.238 1256 chr20 48714727 48733378 + 0 NA intron (NM_001257399, intron 1 of 4) intron (NM_001257399, intron 1 of 4) 5683 NM_001257399 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 3.132 2.296 2.284 0.497 1.471 2.257 1.198 0.735 1.867 1.233 1.923 0.705 0.758 0.871 2.176 1.172 1.608 1.223 0.643 0.912 1.022 0.867 0.524 1.523 2.850 1.695 0.800 1.073 1.924 1.520 1.583 0.661 1.105 1.990 1.305 0.598 1.282 2.778 1.251 1.952 0.787 0.579 627 chr15 40628702 40637914 + 0 NA promoter-TSS (NM_207380) promoter-TSS (NM_207380) -140 NM_207380 388115 Hs.32433 NM_207380 ENSG00000188549 C15orf52 - chromosome 15 open reading frame 52 protein-coding 3.353 4.195 0.209 2.079 3.374 1.122 4.397 2.627 8.694 5.387 4.100 4.556 3.456 2.780 4.477 6.206 2.318 4.555 1.214 0.071 1.774 1.886 0.427 3.808 6.768 6.287 2.221 0.626 13.203 1.494 3.339 0.060 2.555 4.486 1.729 1.568 2.421 3.460 4.252 11.048 8.430 6.818 181 chr1 161194783 161198402 + 0 NA promoter-TSS (NR_049819) promoter-TSS (NR_049819) -384 NR_049819 100847090 NR_049819 ENSG00000158882 MIR5187 mir-5187 microRNA 5187 ncRNA 0.973 0.688 0.052 0.822 1.997 13.198 0.978 0.933 4.759 2.176 3.265 1.291 2.512 1.904 0.845 2.317 0.432 1.931 7.416 0.805 1.239 1.061 0.797 4.275 2.427 3.096 1.450 0.614 0.889 1.126 1.536 2.693 1.835 0.839 4.526 1.589 0.724 7.891 2.179 1.160 0.780 0.475 1681 chr6 43593426 43605189 + 0 NA intron (NM_001003690, intron 1 of 3) AluJo|SINE|Alu 2028 NM_001003690 9587 Hs.122346 NM_014628 ENSG00000124688 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 3.641 2.130 1.287 1.289 3.515 2.529 2.640 1.555 7.331 5.442 4.172 1.749 1.610 1.523 2.935 5.035 1.146 1.641 1.544 1.672 2.516 2.609 0.932 1.798 3.580 3.057 1.348 2.004 5.100 2.464 5.409 3.533 1.827 5.558 4.292 1.250 1.191 4.841 1.738 1.789 2.134 1.422 500 chr12 122218190 122245366 + 0 NA promoter-TSS (NM_019034) promoter-TSS (NM_019034) -184 NM_019034 54509 Hs.707579 NM_019034 ENSG00000139725 RHOF ARHF|RIF ras homolog family member F, filopodia associated protein-coding 7.068 3.503 4.997 1.578 4.312 5.932 4.943 2.455 10.360 7.673 4.682 2.954 1.762 3.058 4.329 5.335 2.730 2.152 2.211 2.781 3.191 4.199 3.466 6.329 8.042 5.884 2.603 3.360 2.980 8.090 6.691 3.793 4.882 7.396 7.961 2.717 3.524 10.032 2.604 2.312 2.204 1.359 428 chr12 27482489 27499195 + 0 NA intron (NM_001248005, intron 1 of 13) L2c|LINE|L2 5055 NM_020183 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 4.739 2.597 0.126 2.522 5.193 0.261 1.700 2.270 1.495 0.799 1.073 0.297 3.642 4.037 2.323 3.389 0.647 2.228 0.048 0.041 1.299 0.889 0.118 0.197 2.558 0.868 0.467 1.580 2.531 0.799 3.388 0.326 1.792 4.269 1.951 1.264 0.514 2.523 0.495 2.886 0.293 0.106 474 chr12 74974641 74999301 + 0 NA Intergenic L1ME1|LINE|L1 55420 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 3.995 0.167 0.030 0.162 0.175 0.016 0.221 0.047 0.517 0.560 0.081 0.148 0.072 0.093 0.096 0.117 0.004 0.219 0.032 0.202 0.011 0.015 0.027 0.073 0.026 0.024 0.022 0.065 0.191 0.046 0.205 0.016 0.040 0.272 0.028 0.055 0.037 0.031 0.122 0.031 0.040 0.010 139 chr1 153641057 153652350 + 0 NA Intergenic AluSg|SINE|Alu -3199 NM_001267809 3608 Hs.75117 NM_004515 ENSG00000143621 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 1.085 1.337 0.303 0.740 1.693 1.598 1.342 0.701 12.582 10.884 1.497 1.037 1.351 0.955 1.158 1.399 0.363 1.208 1.103 0.429 1.317 0.928 0.791 2.171 2.036 1.095 0.628 0.479 0.829 1.681 1.866 2.415 4.366 1.821 1.620 0.828 1.163 3.973 1.444 0.598 0.887 0.672 1283 chr20 62608583 62613616 + 0 NA promoter-TSS (NM_080621) promoter-TSS (NM_080621) -104 NM_080621 140700 Hs.27189 NM_080621 ENSG00000130590 SAMD10 C20orf136|dJ591C20|dJ591C20.7 sterile alpha motif domain containing 10 protein-coding 7.604 5.230 0.758 1.110 2.812 3.949 3.718 1.799 14.710 9.297 6.613 2.521 2.747 2.785 4.351 2.040 1.740 1.273 5.003 0.854 1.372 1.366 1.630 2.456 7.977 3.172 2.220 1.648 1.666 1.612 5.618 4.827 3.252 3.728 9.288 2.630 3.649 11.804 1.597 3.229 5.094 2.798 1926 chr9 4136321 4149429 + 0 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 9308 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 3.703 0.509 0.065 0.541 0.854 1.603 0.623 0.449 0.308 0.087 0.119 1.136 0.776 1.524 0.439 2.699 0.188 0.790 0.023 0.032 1.515 1.030 0.263 0.394 0.836 0.631 0.313 3.180 2.037 2.936 0.462 3.141 0.669 0.483 0.315 0.195 0.215 0.183 0.477 1.589 1.763 1.552 423 chr12 24638274 24644670 + 0 NA intron (NM_001261414, intron 1 of 16) AluJr|SINE|Alu 74052 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding 0.044 0.074 0.209 0.599 0.040 0.499 0.050 0.849 0.112 0.099 4.431 0.241 0.034 0.060 1.609 0.057 0.031 0.011 0.099 0.087 0.038 0.025 0.085 0.533 0.064 0.157 0.011 0.771 0.059 0.172 0.062 0.018 0.173 0.107 0.018 1513 chr5 890155 895114 + 0 NA promoter-TSS (NM_001166260) promoter-TSS (NM_001166260) 3 NR_134296 65980 Hs.449278 NM_023924 ENSG00000028310 BRD9 LAVS3040|PRO9856 bromodomain containing 9 protein-coding 2.666 3.288 0.439 2.857 9.553 4.029 4.105 1.595 10.128 6.369 4.437 2.368 1.783 2.367 3.729 3.993 2.004 2.981 1.455 3.657 1.884 2.616 3.038 4.727 3.970 9.510 4.794 1.984 2.939 3.381 4.401 3.152 9.436 13.401 4.870 3.692 3.140 2.576 2.872 1.009 2.831 1.038 1664 chr6 34511009 34540356 + 0 NA Intergenic AluSx1|SINE|Alu -1572 NM_012391 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 0.372 0.315 0.017 0.317 0.296 0.069 0.169 0.451 4.039 0.859 0.905 0.414 0.278 0.558 0.716 3.401 0.020 0.122 0.147 0.024 1.607 1.008 0.060 0.182 0.359 0.383 0.212 0.320 0.181 1.900 0.175 0.700 2.213 0.403 0.884 0.358 1.726 0.255 0.454 0.853 0.030 0.023 214 chr1 231272907 231278002 + 0 NA Intergenic Intergenic -23220 NM_001300889 440730 Hs.655089 NM_001004342 ENSG00000119283 TRIM67 TNL tripartite motif containing 67 protein-coding 1.201 0.130 0.330 0.144 5.342 0.121 0.020 0.247 0.174 3.388 1.722 0.439 0.410 0.056 1.104 0.038 0.182 0.040 0.349 0.143 0.030 4.980 0.288 0.215 0.077 0.047 0.371 0.781 0.070 8.126 2.426 0.126 2.321 0.194 1.704 0.046 0.795 1.811 0.486 0.141 21 chr1 16157705 16164869 + 0 NA non-coding (NR_024279, exon 2 of 2) non-coding (NR_024279, exon 2 of 2) -13072 NM_015001 23013 Hs.744843 NM_015001 ENSG00000065526 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 5.791 5.836 9.712 1.696 4.402 6.429 7.894 2.717 11.212 6.750 7.006 3.179 2.367 3.337 3.163 3.364 2.599 3.110 3.010 4.041 3.325 4.467 3.266 4.260 5.604 4.919 2.130 2.805 5.451 3.922 6.001 4.268 3.707 5.505 5.995 2.253 3.181 6.576 3.577 3.830 2.363 1.922 1241 chr20 35917245 35924828 + 0 NA intron (NM_001003897, intron 1 of 2) L1MC3|LINE|L1 2985 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 2.825 3.289 0.533 1.778 3.234 2.460 2.079 1.363 nan 1.928 1.708 1.445 1.804 2.044 1.914 2.698 1.086 4.392 0.538 1.006 2.165 1.900 0.903 4.069 2.596 2.568 1.265 1.951 2.818 3.966 3.025 0.809 2.063 5.295 6.307 1.569 1.720 3.724 4.481 3.239 2.240 1.366 1759 chr7 55431659 55435688 + 0 NA 5' UTR (NM_018697, exon 1 of 9) 5' UTR (NM_018697, exon 1 of 9) 532 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 6.906 4.323 3.582 1.183 2.722 2.968 7.385 1.309 10.409 9.661 45.549 1.047 1.817 2.381 10.662 3.190 2.159 3.422 3.892 2.789 3.068 4.630 2.268 1.186 5.102 3.053 1.562 19.609 4.310 4.199 4.706 3.446 2.749 4.462 6.965 2.459 3.859 6.365 6.486 2.472 2.444 1.937 1323 chr22 20857942 20891123 + 0 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 12197 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 2.612 4.002 7.123 1.471 3.314 1.465 3.445 1.628 nan 2.267 2.558 1.473 0.959 1.218 0.920 0.832 1.239 0.586 0.202 0.070 0.928 0.856 0.933 0.509 4.073 1.310 0.637 1.172 2.653 0.896 1.470 0.286 1.038 3.642 1.766 0.465 1.381 0.787 1.794 1.761 0.951 0.924 1845 chr8 42744357 42756160 + 0 NA intron (NR_027669, intron 1 of 5) AluJo|SINE|Alu 1160 NR_039679 100616115 NR_039679 ENSG00000120925 MIR4469 mir-4469 microRNA 4469 ncRNA 2.556 1.139 3.721 0.564 1.312 0.605 0.987 1.261 2.028 1.161 4.924 0.583 0.591 1.311 1.804 1.088 0.461 1.034 0.679 1.260 1.305 1.189 2.143 0.790 2.288 1.981 1.196 0.482 1.686 2.128 1.724 0.768 0.819 2.153 0.447 1.062 2.029 1.912 0.819 0.772 2.051 2.467 115 chr1 150889247 150900929 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -3727 NM_001145415 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated 1 protein-coding 0.687 1.153 0.972 0.764 1.741 0.809 0.539 0.387 12.863 9.719 0.791 0.927 0.748 0.851 1.006 1.814 0.449 1.211 0.914 0.856 0.971 0.901 0.525 1.577 1.514 1.089 0.520 0.328 1.028 0.794 1.734 1.980 1.960 1.543 1.090 0.397 1.299 2.561 1.302 0.469 0.572 0.362 964 chr19 952135 958209 + 0 NA intron (NM_005224, intron 3 of 8) intron (NM_005224, intron 3 of 8) 29135 NM_005224 1820 Hs.501296 NM_005224 ENSG00000116017 ARID3A BRIGHT|DRIL1|DRIL3|E2FBP1 AT-rich interaction domain 3A protein-coding 0.607 0.292 6.439 0.565 1.479 0.160 0.067 0.573 3.368 1.003 1.183 0.266 0.194 0.101 3.051 2.092 3.306 0.224 0.098 0.182 0.046 0.036 0.853 0.193 0.227 0.596 0.377 0.581 0.196 0.512 0.440 0.064 0.493 3.847 0.174 0.499 1.599 0.880 0.210 0.226 0.351 0.100 1699 chr6 108878170 108887198 + 0 NA exon (NM_201559, exon 2 of 4) exon (NM_201559, exon 2 of 4) 615 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 3.594 2.741 0.736 1.037 3.385 1.313 2.896 0.835 5.171 2.916 4.130 1.419 1.010 2.632 6.293 2.063 0.946 2.536 1.028 3.243 1.506 1.892 0.925 0.397 4.596 3.031 1.755 1.750 1.965 2.209 5.593 0.559 1.621 4.991 2.966 0.866 1.447 3.643 2.324 1.719 5.887 5.876 1252 chr20 44599131 44603023 + 0 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -244 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 7.538 8.556 4.133 3.064 6.644 8.637 4.813 2.496 7.674 4.689 7.045 3.956 4.639 3.832 5.581 3.543 4.016 2.195 3.753 6.210 2.839 4.259 3.791 6.975 15.247 5.390 2.483 4.149 7.880 6.037 7.537 4.399 4.806 9.793 8.257 3.632 5.166 12.061 6.599 8.277 4.364 3.506 1785 chr7 76578820 76597244 + 0 NA Intergenic AluYc|SINE|Alu -22107 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11 DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene pseudo 1.117 1.424 0.444 1.667 3.458 0.290 2.860 0.724 1.895 0.564 2.069 0.572 0.449 1.728 1.624 3.991 1.528 1.327 0.310 0.210 1.869 2.420 0.389 0.375 6.314 0.965 0.538 1.572 1.996 2.174 0.989 0.227 0.747 3.732 0.287 2.333 0.206 0.524 0.654 1.392 1.813 1.353 1873 chr8 81827388 81841302 + 0 NA Intergenic L1MB5|LINE|L1 -47329 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.150 0.499 0.112 0.027 0.109 0.073 0.312 0.068 1.408 0.256 0.567 0.391 0.050 0.369 0.922 0.195 0.409 0.641 0.072 1.594 0.947 0.026 0.093 0.106 0.165 0.028 1.534 0.185 0.502 0.070 4.800 1.371 0.118 0.047 0.219 0.137 0.025 0.102 0.186 0.037 0.018 634 chr15 60363245 60386567 + 0 NA Intergenic Intergenic 78485 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 0.182 0.106 0.032 0.144 0.289 0.390 0.201 0.408 2.095 0.549 2.680 0.012 0.114 0.439 1.034 0.322 0.517 0.074 0.025 0.006 0.134 0.068 0.032 0.144 0.641 0.240 0.148 0.178 0.354 0.109 0.028 0.434 0.550 0.229 0.205 0.918 0.258 0.142 0.834 0.160 0.467 0.578 227 chr10 178020 183214 + 0 NA promoter-TSS (NM_001202464) promoter-TSS (NM_001202464) 193 NM_001330057 10771 Hs.292265 NM_006624 ENSG00000015171 ZMYND11 BRAM1|BS69|MRD30 zinc finger MYND-type containing 11 protein-coding 4.318 3.616 2.166 0.548 3.374 6.018 3.410 0.708 3.644 3.010 3.172 0.477 1.455 1.149 2.676 1.592 1.210 2.373 0.478 3.501 1.714 2.343 4.645 2.828 3.445 6.254 2.418 0.661 2.464 6.005 3.797 2.905 4.757 4.393 8.849 1.871 2.741 7.274 3.268 2.184 4.158 3.099 1762 chr7 56172446 56175104 + 0 NA intron (NM_016139, intron 1 of 3) intron (NM_016139, intron 1 of 3) 548 NM_016139 51142 Hs.389996 NM_016139 ENSG00000106153 CHCHD2 C7orf17|MNRR1|NS2TP|PARK22 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding 6.372 3.119 2.835 0.880 2.458 2.376 4.624 1.109 5.758 5.703 20.042 1.375 0.893 1.735 13.086 2.625 2.300 2.310 2.098 1.761 3.031 2.572 1.134 1.396 4.297 2.336 1.337 3.689 3.444 2.786 3.231 3.096 3.269 3.291 5.096 2.020 1.787 3.513 5.595 1.939 1.884 1.650 1278 chr20 61845705 61873582 + 0 NA Intergenic AluSx|SINE|Alu -7592 NM_022161 79444 Hs.256126 NM_022161 ENSG00000101197 BIRC7 KIAP|LIVIN|ML-IAP|MLIAP|RNF50 baculoviral IAP repeat containing 7 protein-coding 1.497 0.714 0.306 0.851 1.129 1.043 7.681 1.382 5.151 1.699 0.892 0.514 1.514 1.694 1.003 1.294 0.605 1.143 0.377 0.498 2.041 1.933 0.873 2.915 2.365 0.834 0.503 1.224 0.996 4.324 0.736 0.775 1.566 0.840 2.326 0.521 1.250 2.805 1.479 0.417 0.572 0.498 1669 chr6 36082304 36101938 + 0 NA Intergenic AluSq|SINE|Alu -6140 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 0.936 1.767 0.291 0.955 2.337 0.203 2.243 1.941 6.425 3.371 6.243 1.466 0.781 1.042 3.069 4.211 0.285 0.239 1.236 0.050 1.261 0.857 0.101 0.144 0.750 0.258 0.227 0.648 0.377 0.164 0.496 0.739 1.238 2.892 0.334 0.499 0.526 0.316 0.713 0.024 0.044 0.047 1100 chr2 8711019 8724911 + 0 NA intron (NR_110257, intron 3 of 5) MIRb|SINE|MIR 5957 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 0.130 0.173 0.053 0.519 0.236 0.054 0.166 0.053 0.941 0.294 0.148 0.042 0.051 0.141 0.052 0.205 0.028 0.098 3.544 0.109 0.100 0.034 0.111 0.148 0.180 0.057 0.022 0.082 0.187 0.585 0.143 1.028 0.794 0.139 0.040 0.228 0.512 0.243 0.135 0.098 0.033 0.018 1684 chr6 45386836 45423105 + 0 NA intron (NM_001015051, intron 4 of 7) intron (NM_001015051, intron 4 of 7) 14656 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.387 2.253 0.140 0.338 0.893 1.274 0.382 0.498 2.488 1.303 1.244 1.044 0.871 0.318 0.937 1.759 0.325 2.256 0.022 1.108 1.007 0.448 0.069 0.363 0.358 0.462 0.293 0.316 3.800 0.121 1.675 1.189 0.719 0.482 0.799 0.362 0.120 1.215 1.210 2.617 5.917 6.500 672 chr15 96724284 96730152 + 0 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -141939 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 0.312 0.066 0.043 0.108 0.635 0.045 0.190 0.096 0.121 0.004 0.020 0.150 0.145 0.050 0.182 0.023 0.257 0.024 0.063 0.103 0.063 0.010 0.013 0.052 0.243 3.974 0.073 4.800 4.356 0.072 0.016 0.503 3.422 0.110 0.014 0.087 0.010 0.008 856 chr17 40713093 40721023 + 0 NA exon (NM_001042529, exon 6 of 10) exon (NM_001042529, exon 6 of 10) -2020 NM_170607 6945 Hs.383019 NM_170607 ENSG00000108788 MLX MAD7|MXD7|TCFL4|TF4|bHLHd13 MLX, MAX dimerization protein protein-coding 3.676 3.930 0.585 1.851 4.774 8.859 3.980 1.556 nan 1.953 2.995 1.457 2.236 3.125 3.717 3.711 1.315 1.342 1.200 1.656 2.452 2.561 2.138 3.259 4.848 2.467 0.940 2.024 3.067 3.942 2.543 4.652 2.631 4.012 3.194 2.070 2.013 5.132 3.586 1.908 2.150 1.271 982 chr19 4908204 4916844 + 0 NA intron (NM_001048201, intron 2 of 17) L1ME2z|LINE|L1 2145 NM_013282 29128 Hs.108106 NM_013282 ENSG00000276043 UHRF1 ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95 ubiquitin like with PHD and ring finger domains 1 protein-coding 2.969 2.316 0.266 1.582 4.316 4.347 4.271 1.384 3.945 1.562 2.100 1.334 1.474 2.508 2.490 3.219 1.548 2.856 0.496 1.313 2.864 2.868 2.100 1.513 10.710 3.938 1.524 1.949 6.879 2.360 4.304 0.839 1.618 4.903 3.173 1.373 4.190 9.135 4.419 3.039 5.517 3.976 1496 chr4 146855567 146862463 + 0 NA intron (NM_001306215, intron 1 of 14) CpG 1097 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 5.253 4.997 0.529 0.911 2.576 2.251 5.088 1.712 4.148 2.530 2.383 2.719 2.021 1.325 2.413 3.837 2.627 6.079 1.147 4.878 1.841 2.715 1.517 2.860 4.983 2.718 1.311 2.207 4.647 2.857 3.198 2.669 1.576 2.397 0.226 1.263 2.183 3.015 2.197 2.229 2.054 1.492 1955 chr9 109969452 109986703 + 0 NA Intergenic LTR82A|LTR|ERVL -67440 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 0.556 0.425 0.295 1.608 2.253 0.164 3.778 1.717 2.669 1.311 1.371 1.428 0.969 0.733 0.208 3.610 0.111 0.773 0.087 0.016 1.066 0.533 0.303 0.433 1.063 0.160 0.094 1.008 0.429 0.127 0.692 0.244 1.650 2.612 0.747 0.414 0.272 0.176 1.040 0.505 0.397 0.428 1816 chr7 141394163 141406132 + 0 NA intron (NM_001080392, intron 1 of 8) intron (NM_001080392, intron 1 of 8) 1806 NM_001080392 57189 Hs.521240 NM_001080392 ENSG00000257093 KIAA1147 LCHN|PRO2561 KIAA1147 protein-coding 0.576 2.894 0.061 0.221 0.786 0.021 0.612 0.123 1.159 0.564 1.119 0.415 0.386 0.219 0.619 0.538 0.127 0.776 0.410 0.081 0.414 0.224 0.283 0.203 0.601 0.318 0.274 0.186 0.334 1.190 1.003 3.119 2.731 0.645 0.805 0.419 2.333 1.042 0.780 1.724 0.063 0.030 1859 chr8 68254365 68257063 + 0 NA promoter-TSS (NR_136224) promoter-TSS (NR_136224) 198 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 4.909 4.531 2.122 1.253 4.953 3.258 5.488 1.510 10.617 8.282 8.546 2.060 1.445 2.229 2.854 4.117 2.743 2.848 2.947 2.456 3.355 3.975 3.439 1.475 4.918 7.037 3.655 11.212 5.168 6.091 14.290 3.470 2.529 8.816 4.289 2.132 2.264 4.970 3.359 2.764 1.444 0.848 133 chr1 151800938 151822578 + 0 NA intron (NM_001136003, intron 1 of 1) intron (NM_001136003, intron 1 of 1) 813 NR_024237 100132111 Hs.697059 NR_024237 LOC100132111 - uncharacterized LOC100132111 ncRNA 0.967 0.118 0.023 1.017 1.192 0.178 2.184 1.355 28.971 15.141 0.642 1.845 1.517 0.531 0.756 2.305 0.159 0.298 0.646 0.019 1.286 0.904 0.139 0.471 0.157 0.131 0.094 0.117 0.106 0.518 0.135 10.489 11.922 2.413 0.115 2.396 7.255 0.504 0.754 0.089 1.038 0.844 863 chr17 41853980 41857092 + 0 NA intron (NM_004090, intron 1 of 2) intron (NM_004090, intron 1 of 2) 832 NM_004090 1845 Hs.181046 NM_004090 ENSG00000108861 DUSP3 VHR dual specificity phosphatase 3 protein-coding 4.198 4.596 2.464 1.154 5.409 6.112 3.015 0.814 5.753 5.828 3.436 0.705 1.521 2.376 1.914 2.161 2.258 1.629 1.000 2.838 1.536 2.233 4.438 2.610 5.332 3.238 1.178 1.586 3.088 6.604 3.479 2.901 2.970 11.113 2.596 1.586 3.627 6.717 2.165 1.912 2.826 2.096 1099 chr2 8653401 8669690 + 0 NA Intergenic Intergenic 62377 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 0.375 0.092 0.072 0.024 0.112 0.019 0.082 0.019 1.201 0.271 0.160 0.027 0.057 0.080 0.041 0.106 0.012 0.080 4.173 0.008 0.008 0.009 0.054 0.088 0.183 0.026 0.014 0.065 0.080 0.311 0.056 0.165 0.274 0.061 0.090 0.190 0.077 0.039 0.023 0.004 0.022 1048 chr19 44171294 44181596 + 0 NA Intergenic L2a|LINE|L2 -1947 NM_002659 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 2.886 3.902 0.314 2.013 3.467 1.065 3.875 1.780 nan 1.888 2.971 1.348 1.395 2.358 2.588 2.116 1.652 2.039 0.162 0.134 2.445 2.056 0.456 0.917 6.520 1.543 0.854 1.811 3.411 3.430 9.059 1.089 2.073 5.691 1.221 1.412 1.995 3.657 0.918 2.764 1.299 1.271 1037 chr19 41826728 41835393 + 0 NA TTS (NM_052848) TTS (NM_052848) 14675 NM_001346100 90324 Hs.437497 NM_052848 ENSG00000142039 CCDC97 - coiled-coil domain containing 97 protein-coding 3.799 4.718 0.007 1.826 3.238 1.510 0.347 0.486 nan 3.968 3.262 0.677 2.959 0.672 0.510 2.005 0.132 6.320 0.287 0.180 1.235 0.861 0.959 0.988 2.548 1.135 0.449 1.596 0.185 2.123 5.659 0.046 0.884 4.937 0.096 0.777 0.302 0.737 0.945 3.496 0.080 0.076 1128 chr2 46389070 46400344 + 0 NA intron (NM_005400, intron 14 of 14) intron (NM_005400, intron 14 of 14) -129834 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.413 1.503 0.638 0.756 1.559 0.577 0.737 1.233 5.297 1.225 1.173 2.270 1.324 1.104 1.945 4.172 1.070 0.270 0.027 0.041 2.784 2.187 0.378 0.186 1.790 0.256 0.131 1.509 0.345 1.157 0.078 0.186 1.643 2.251 1.666 1.201 3.791 0.848 1.553 1.888 0.089 0.075 169 chr1 156425516 156443311 + 0 NA 3' UTR (NM_001271629, exon 11 of 11) 3' UTR (NM_001271629, exon 11 of 11) 25978 NM_001271629 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 0.619 0.782 1.052 0.268 1.149 1.819 0.945 0.568 3.809 1.420 2.019 0.687 0.749 0.705 0.959 0.950 0.204 0.568 2.767 0.433 0.716 0.763 0.725 1.134 1.448 0.458 0.281 0.725 0.682 1.404 1.123 0.672 2.912 1.858 0.887 0.886 2.282 2.778 1.236 0.356 0.684 0.571 157 chr1 155138932 155150690 + 0 NA intron (NM_173852, intron 3 of 4) intron (NM_173852, intron 3 of 4) 993 NM_173852 200185 Hs.516671 NM_173852 ENSG00000163463 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding 1.065 1.244 0.396 0.563 1.347 4.232 0.991 0.670 2.606 1.227 1.859 1.132 0.987 0.790 0.851 0.779 0.862 1.237 4.396 0.435 0.780 0.662 1.448 1.224 1.904 0.749 0.401 0.312 0.584 1.239 1.673 3.376 2.039 1.121 1.242 0.613 1.169 5.109 1.034 0.906 0.397 0.226 1209 chr20 326663 366315 + 0 NA Intergenic AluSq2|SINE|Alu -14784 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 0.667 2.178 0.338 0.449 1.323 0.787 0.369 1.037 10.595 6.014 2.330 0.964 0.400 0.911 2.133 1.030 1.272 1.427 0.607 3.728 1.323 1.277 0.637 5.001 1.084 0.730 0.396 0.795 0.726 3.807 1.417 2.606 3.971 1.555 0.852 1.773 3.519 1.080 1.773 0.479 0.653 0.280 1609 chr5 179243612 179255206 + 0 NA intron (NM_003900, intron 1 of 7) intron (NM_003900, intron 1 of 7) 1567 NM_003900 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 2.868 4.713 1.476 1.073 2.604 4.564 5.497 2.419 4.886 3.597 2.882 0.929 1.726 2.853 3.073 3.128 0.619 2.350 1.792 1.723 4.058 6.315 2.683 6.667 4.773 6.456 2.907 2.055 8.861 5.583 5.883 3.933 4.401 3.839 2.684 3.257 1.597 3.257 2.080 1.514 2.553 1.550 1934 chr9 35687328 35692363 + 0 NA 5' UTR (NM_001301227, exon 1 of 9) 5' UTR (NM_001301227, exon 1 of 9) 208 NM_003289 7169 Hs.300772 NM_003289 ENSG00000198467 TPM2 AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB tropomyosin 2 (beta) protein-coding 2.590 4.514 0.445 1.209 2.057 1.631 1.522 0.686 4.012 1.618 2.614 1.948 1.520 2.444 1.359 4.659 2.576 2.810 2.561 0.688 4.530 4.684 4.348 1.367 6.536 5.216 2.879 1.359 6.226 6.354 8.082 0.502 2.546 1.792 2.884 0.467 0.742 15.458 3.695 4.093 2.608 1.361 1596 chr5 154132582 154137510 + 0 NA intron (NM_015315, intron 1 of 18) CpG 42584 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 7.195 6.152 3.989 1.502 5.036 6.329 5.649 2.388 9.948 8.501 5.494 1.807 3.562 5.221 5.324 6.188 3.042 3.227 1.639 3.711 4.900 7.395 5.412 7.761 8.022 7.252 2.997 3.387 6.752 7.357 9.320 5.214 6.291 6.403 7.212 4.670 3.621 8.821 4.717 3.652 4.966 2.911 601 chr14 75024247 75055138 + 0 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 39342 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 1.564 1.570 1.225 1.029 1.402 3.474 3.891 3.027 5.018 2.300 3.161 2.524 1.417 1.860 5.719 3.229 0.432 2.034 0.032 0.022 4.302 3.738 0.145 0.421 2.868 1.204 0.610 2.300 3.315 0.461 1.674 0.043 1.966 1.147 1.873 0.797 0.314 0.637 2.189 5.623 6.634 5.977 1167 chr2 161246360 161268509 + 0 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 6959 NR_039946 100616364 NR_039946 ENSG00000153250 MIR4785 mir-4785 microRNA 4785 ncRNA 2.296 1.784 0.221 0.326 0.778 0.517 0.905 0.390 1.216 0.458 0.621 0.290 0.407 0.948 0.603 0.884 0.542 1.022 0.031 1.230 0.899 0.482 1.613 0.979 1.002 0.506 0.771 0.835 1.621 1.730 0.189 0.629 0.842 0.393 1.178 0.599 0.611 0.760 1.004 0.135 0.064 473 chr12 66329129 66344636 + 0 NA intron (NM_001300918, intron 3 of 4) L2c|LINE|L2 -60935 NM_001292024 100129940 Hs.685856 NM_001292023 ENSG00000197301 LOC100129940 - uncharacterized LOC100129940 protein-coding 0.467 0.734 0.076 0.593 0.933 0.717 0.781 0.510 1.580 0.465 0.408 0.263 0.475 1.112 0.279 0.820 0.025 4.015 0.156 1.775 1.326 0.551 0.014 0.114 0.243 0.152 0.110 0.639 0.670 0.546 1.562 0.357 0.124 0.414 6.993 0.149 0.080 0.165 0.779 0.224 1.630 1.701 864 chr17 42275165 42278737 + 0 NA Intergenic CpG -1422 NM_001098833 56970 Hs.512651 NM_020218 ENSG00000087152 ATXN7L3 - ataxin 7 like 3 protein-coding 9.632 9.959 3.969 2.070 8.895 6.616 8.949 2.284 16.446 12.253 9.081 1.687 2.916 3.886 6.461 6.953 4.233 3.727 2.761 4.693 4.808 7.429 6.651 5.822 10.800 5.558 2.667 4.978 7.604 11.099 4.985 4.127 5.855 9.707 4.402 4.141 5.309 11.930 4.139 3.907 3.853 2.173 876 chr17 46644067 46699693 + 0 NA promoter-TSS (NM_002147) promoter-TSS (NM_002147) -777 NM_002147 3215 Hs.654456 NM_002147 ENSG00000120075 HOXB5 HHO.C10|HOX2|HOX2A|HU-1|Hox2.1 homeobox B5 protein-coding 5.405 0.704 0.540 0.388 0.963 0.518 0.584 0.611 nan 2.314 1.063 0.074 0.594 0.340 1.306 0.378 0.177 1.466 2.350 4.964 0.885 0.762 0.863 1.654 5.389 2.783 1.433 0.488 2.418 3.512 5.236 0.328 0.120 0.544 2.637 0.121 1.036 1.860 0.134 0.962 10.842 8.557 1211 chr20 630325 649838 + 0 NA Intergenic LTR67B|LTR|ERVL -6067 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 0.464 1.527 0.207 0.233 0.514 1.149 0.206 0.179 1.374 0.660 0.423 0.150 0.223 0.420 1.066 0.379 0.231 1.169 0.155 0.839 1.545 1.672 0.746 4.456 1.123 1.215 0.427 0.264 0.994 5.174 1.086 0.397 1.291 0.654 0.777 1.049 1.476 1.129 0.633 0.215 0.611 0.370 1409 chr3 141654599 141661463 + 0 NA Intergenic AluSz|SINE|Alu 61198 NM_001178140 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 0.346 0.346 0.425 0.693 1.063 0.690 2.359 1.782 0.774 0.323 2.124 0.447 0.809 1.174 1.314 2.269 0.727 1.050 0.059 0.060 0.996 0.673 0.277 2.175 1.748 0.441 0.295 1.370 0.438 0.179 0.425 1.045 0.302 1.493 6.362 0.260 0.269 6.554 1.830 0.909 1.317 1.121 1377 chr3 49376171 49401478 + 0 NA Intergenic AluSg|SINE|Alu 7209 NM_000581 2876 Hs.76686 NM_000581 ENSG00000233276 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 1.208 1.941 0.447 1.033 2.444 1.567 4.663 2.138 4.006 1.426 1.147 1.115 0.652 1.600 2.897 2.141 1.166 0.757 0.586 0.494 1.519 1.369 0.457 0.978 2.130 1.888 0.950 1.243 1.382 1.319 0.816 0.740 1.837 2.405 1.761 1.119 0.319 0.754 1.756 0.861 0.790 0.481 1564 chr5 74859729 74865783 + 0 NA intron (NM_001345921, intron 2 of 13) intron (NM_001345921, intron 2 of 13) -44545 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 2.891 1.649 0.389 2.221 3.541 0.528 4.775 4.026 1.445 0.415 1.132 2.624 1.896 3.214 0.207 5.535 0.394 2.189 0.046 2.845 2.662 1.084 1.554 2.970 1.615 0.768 2.383 0.578 1.264 0.479 0.208 0.319 3.144 6.831 0.356 0.330 0.560 2.710 2.666 2.309 1.895 1281 chr20 62309269 62324504 + 0 NA exon (NM_001283009, exon 15 of 35) exon (NM_001283009, exon 15 of 35) -11118 NM_003823 8771 Hs.434878 NM_003823 ENSG00000243509 TNFRSF6B DCR3|DJ583P15.1.1|M68|M68E|TR6 TNF receptor superfamily member 6b protein-coding 1.516 4.058 0.158 1.719 3.626 4.787 4.787 2.552 11.819 3.476 2.903 2.564 3.549 3.161 1.581 4.014 1.071 1.170 0.104 0.064 3.135 3.573 1.188 1.916 12.533 4.579 1.903 2.546 7.723 2.176 3.798 1.082 1.861 3.652 6.620 1.944 1.396 3.732 2.407 3.324 4.495 3.984 1396 chr3 111298900 111315397 + 0 NA intron (NM_005816, intron 5 of 13) THE1B-int|LTR|ERVL-MaLR 7034 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 2.711 0.052 5.404 0.685 1.030 2.569 2.247 2.133 3.133 0.666 0.525 1.093 0.281 1.958 0.491 2.253 0.213 0.106 0.030 0.017 2.799 1.899 0.432 0.052 0.245 0.386 0.283 1.212 0.244 0.133 0.060 0.095 0.164 1.522 1.697 1.481 0.130 0.550 0.404 0.597 2.308 3.426 1744 chr7 20817231 20838822 + 0 NA Intergenic Intergenic -1518 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 0.267 0.132 2.914 0.167 0.967 0.635 1.029 0.126 3.952 2.243 4.331 0.270 0.211 0.045 0.328 0.158 0.031 0.072 0.637 0.013 0.183 0.060 0.110 0.156 0.476 0.100 0.109 0.191 0.473 0.656 0.738 0.697 0.084 0.935 0.132 0.204 0.347 1.284 0.108 0.102 0.141 0.052 259 chr10 75333070 75353341 + 0 NA intron (NM_001320441, intron 1 of 14) AluSq2|SINE|Alu -7772 NM_152586 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 0.419 0.498 3.486 0.272 0.671 0.050 1.070 0.372 1.088 0.650 1.563 0.130 0.157 0.338 0.885 0.614 0.629 1.169 0.089 0.068 0.520 0.212 0.058 0.117 0.182 0.157 0.042 0.364 0.178 0.253 0.355 0.375 0.338 1.267 0.508 0.289 0.362 0.095 0.512 0.142 0.170 0.115 1868 chr8 80695003 80715187 + 0 NA intron (NR_125410, intron 3 of 3) L1MA4|LINE|L1 24718 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 0.193 0.581 0.233 1.344 2.229 0.162 1.480 1.259 5.641 2.304 0.631 2.434 0.906 0.756 1.294 2.908 0.038 0.983 0.267 0.028 1.389 0.885 0.222 0.580 0.552 0.454 0.342 0.780 3.209 0.956 1.968 1.107 4.674 2.223 2.343 1.236 2.842 0.179 0.766 0.225 0.060 0.063 1880 chr8 102367593 102392255 + 0 NA Intergenic AluJo|SINE|Alu -1197 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 0.555 0.634 1.788 0.754 1.306 0.753 0.792 0.864 3.780 1.410 2.488 1.518 0.541 0.838 3.482 4.035 1.174 1.629 0.438 0.045 1.649 1.335 0.520 1.535 0.435 0.215 0.141 0.994 0.937 1.487 0.101 1.928 3.316 1.421 1.205 1.486 2.758 0.462 1.125 1.454 0.047 0.020 848 chr17 38802175 38805487 + 0 NA intron (NM_003079, intron 1 of 10) intron (NM_003079, intron 1 of 10) 272 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 27.837 6.656 1.498 2.119 6.366 4.269 5.799 2.462 6.033 4.571 6.730 2.906 3.710 5.572 5.835 3.802 2.006 1.649 1.361 4.162 4.664 7.124 3.449 5.924 6.900 10.254 4.922 3.554 7.505 8.429 3.727 3.572 6.049 7.327 3.585 3.664 5.106 6.605 4.127 2.480 2.660 2.055 624 chr15 32903152 32910657 + 0 NA promoter-TSS (NM_014783) promoter-TSS (NM_014783) 43 NR_135833 101928042 NR_135833 LOC101928042 - uncharacterized LOC101928042 ncRNA 1.711 2.589 1.032 1.111 2.473 4.613 2.495 0.886 6.855 3.929 1.833 2.046 1.538 2.175 2.130 4.141 1.734 3.401 1.855 1.699 2.727 2.864 0.943 5.124 2.420 3.587 1.375 1.345 4.842 3.796 3.649 3.225 3.087 2.220 6.734 1.895 1.282 2.355 2.738 5.803 2.643 1.959 1512 chr5 392836 403526 + 0 NA intron (NM_020731, intron 4 of 11) intron (NM_020731, intron 4 of 11) 45094 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 0.262 1.637 0.006 1.063 1.668 0.093 0.119 0.098 3.905 0.386 0.258 0.567 0.309 0.133 0.117 4.828 0.062 1.752 6.022 0.221 1.491 0.865 0.140 1.095 1.015 1.306 0.600 0.525 0.334 0.584 0.283 0.082 1.152 1.907 0.066 0.103 0.282 0.148 0.631 0.214 4.301 3.973 638 chr15 66192618 66200611 + 0 NA intron (NM_032445, intron 21 of 22) MIR3|SINE|MIR 34817 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 0.562 0.292 5.581 0.215 0.437 0.125 0.059 0.198 0.944 0.291 0.184 0.127 0.029 0.254 0.782 0.275 0.381 0.184 0.223 0.004 0.319 0.175 0.059 0.127 0.106 0.008 0.010 0.125 0.212 1.027 0.125 0.158 0.551 0.383 0.081 0.690 2.466 0.076 0.168 0.059 0.036 0.038 698 chr16 4844547 4853651 + 0 NA intron (NR_046480, intron 5 of 9) intron (NR_046480, intron 5 of 9) 3720 NM_001253793 440335 Hs.390599 NM_001253790 ENSG00000267795 SMIM22 - small integral membrane protein 22 protein-coding 2.728 2.528 0.163 0.729 1.864 0.875 1.940 0.186 7.550 5.053 2.144 1.123 0.480 0.575 2.149 1.361 0.515 0.342 1.880 0.198 0.590 0.610 0.700 0.539 1.006 0.382 0.147 0.918 0.529 1.382 1.023 1.445 5.013 1.916 0.868 0.729 1.116 1.718 0.537 0.643 0.278 0.178 790 chr17 7163087 7170462 + 0 NA promoter-TSS (NM_001307) promoter-TSS (NM_001307) -262 NM_001185022 1366 Hs.513915 NM_001307 ENSG00000181885 CLDN7 CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1 claudin 7 protein-coding 3.576 0.824 4.291 2.209 7.210 0.896 4.453 1.606 8.361 6.298 7.569 2.033 0.288 3.146 5.250 4.363 1.962 0.524 2.481 0.150 1.286 1.027 0.160 1.302 0.362 0.368 0.266 6.527 0.804 2.036 1.979 1.332 4.354 15.001 11.554 3.111 3.287 0.457 2.140 0.409 0.116 0.062 378 chr11 118777266 118811902 + 0 NA Intergenic Intergenic -12971 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 3.264 6.005 4.792 1.942 4.626 7.717 6.915 3.315 8.631 7.703 3.611 4.178 3.195 6.004 8.122 6.053 3.346 2.944 1.302 0.984 4.057 5.754 3.356 6.449 23.102 8.502 3.131 5.853 6.715 5.308 6.175 2.989 5.990 6.417 9.143 2.886 6.490 6.808 4.560 6.065 3.378 2.279 95 chr1 94690365 94738166 + 0 NA promoter-TSS (NM_001328665) promoter-TSS (NM_001328665) -949 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 2.608 0.380 0.056 1.138 2.265 0.412 1.877 1.475 0.847 0.319 0.539 1.377 0.423 1.214 5.399 2.071 0.690 0.695 1.831 0.023 1.196 0.878 0.029 0.208 0.956 0.194 0.100 0.459 0.276 0.231 0.331 0.188 0.642 1.744 3.674 0.090 0.213 0.360 1.244 0.632 0.994 0.990 805 chr17 17711951 17766618 + 0 NA intron (NM_001005291, intron 1 of 19) L2b|LINE|L2 1041 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 0.872 0.667 0.999 0.525 1.845 1.870 1.117 0.438 6.539 2.972 3.836 1.161 0.317 0.860 2.067 1.532 1.132 1.263 0.853 0.878 0.780 0.824 0.715 2.856 1.522 1.319 0.627 1.727 0.602 4.376 3.829 1.506 1.366 2.397 2.700 1.330 1.104 3.189 2.303 0.717 0.708 0.504 968 chr19 1124232 1134559 + 0 NA intron (NM_014963, intron 4 of 31) intron (NM_014963, intron 4 of 31) 2878 NM_001100122 22904 Hs.408708 NM_014963 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 protein-coding 0.992 1.379 0.042 0.971 3.642 1.567 2.906 0.254 4.121 1.344 0.321 0.100 1.006 3.283 0.271 1.728 0.596 0.451 0.300 0.106 2.232 2.926 0.315 0.230 2.580 2.721 1.139 0.830 1.357 1.170 2.700 0.069 0.269 2.360 0.170 0.451 0.160 0.541 2.613 0.565 0.630 0.352 1312 chr21 46284513 46303252 + 0 NA promoter-TSS (NM_001286822) promoter-TSS (NM_001286822) -64 NM_001286822 754 Hs.474010 NM_004339 ENSG00000183255 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 2.208 2.673 1.059 0.953 2.747 3.380 2.243 2.123 2.254 1.693 1.233 1.570 2.161 3.431 1.979 4.799 1.986 1.213 0.179 0.399 2.337 2.250 0.805 0.576 6.622 2.089 0.912 0.804 2.564 1.082 2.738 0.519 1.321 2.825 4.898 0.980 1.092 1.794 1.542 2.628 2.075 1.675 1957 chr9 110242339 110253605 + 0 NA 3' UTR (NM_001314052, exon 4 of 4) 3' UTR (NM_001314052, exon 4 of 4) 4029 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.942 0.892 0.465 1.265 3.330 0.486 2.781 0.542 nan 1.432 0.935 1.324 0.708 0.936 2.424 1.460 0.406 1.233 0.348 0.013 1.402 1.198 0.394 3.987 0.574 1.867 1.038 0.661 0.921 2.395 1.204 1.617 2.149 4.136 2.202 1.499 2.962 1.268 0.718 0.140 0.271 0.180 1836 chr8 29367327 29390479 + 0 NA Intergenic Intergenic -170636 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 0.246 1.701 0.003 0.426 0.601 0.653 0.733 1.395 3.432 1.045 0.558 0.954 0.378 0.711 2.078 1.645 0.214 1.759 0.080 0.012 2.244 1.651 0.016 1.380 1.070 0.445 0.226 0.451 0.843 1.576 0.034 3.109 3.638 0.485 0.188 0.949 0.445 0.813 0.616 1.442 0.071 0.057 920 chr17 77957675 77981604 + 0 NA intron (NM_019020, intron 3 of 11) L1MD1|LINE|L1 40018 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 0.624 0.650 0.023 0.332 0.450 0.143 0.465 0.194 10.883 5.202 1.433 0.863 0.256 0.430 0.237 0.898 0.092 0.524 0.635 0.278 0.704 0.430 0.113 0.906 0.411 0.143 0.143 0.123 0.196 1.688 0.244 3.000 1.314 0.461 0.198 0.614 0.748 0.672 0.367 0.328 0.043 0.021 910 chr17 75115183 75144365 + 0 NA intron (NM_001204408, intron 3 of 19) AluSx1|SINE|Alu -7231 NM_003003 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.216 2.117 0.221 1.436 3.299 0.905 1.158 1.488 3.469 1.648 1.385 2.695 1.492 1.828 1.249 4.771 1.054 2.737 0.336 0.214 1.400 1.051 1.068 0.890 2.764 1.524 0.727 1.007 4.204 1.024 2.561 0.572 1.653 4.487 3.755 0.671 0.809 1.264 3.449 2.645 2.701 2.411 1097 chr2 564456 571617 + 0 NA Intergenic Intergenic 9835 NR_136168 105373352 NR_136168 LOC105373352 - uncharacterized LOC105373352 ncRNA 0.084 0.032 0.035 0.029 0.017 0.050 0.014 0.068 0.112 0.020 0.041 0.031 0.748 0.080 0.014 0.064 0.027 0.010 0.021 0.053 0.205 0.034 0.044 0.085 0.084 0.068 0.039 8.348 1.241 0.010 0.026 0.068 0.163 0.179 0.067 0.011 0.040 0.028 711 chr16 14046722 14055778 + 0 NA Intergenic Intergenic 37236 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 0.587 2.642 0.048 1.485 2.683 0.325 2.560 1.247 11.147 3.486 3.168 2.290 1.473 4.114 2.192 5.140 2.522 3.295 0.230 4.821 4.431 0.017 5.857 3.316 0.306 0.162 5.375 0.936 4.270 0.181 1.062 2.712 1.591 3.547 0.575 0.615 2.952 3.452 2.103 0.243 0.221 1477 chr4 56410829 56418291 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -1484 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 3.360 4.012 3.276 1.363 3.880 2.518 4.149 3.040 3.900 3.074 3.268 2.675 1.861 2.940 1.421 2.443 1.022 2.838 0.913 3.141 1.436 1.821 2.355 2.665 5.900 3.817 1.653 1.932 5.329 2.575 2.229 1.967 1.450 5.371 3.619 1.249 1.789 7.075 2.253 3.103 2.659 2.012 367 chr11 75916363 75922294 + 0 NA Intergenic CpG -1754 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 0.264 0.652 0.042 0.064 0.179 0.053 0.194 0.250 nan 0.930 0.215 0.420 0.179 0.201 1.038 0.350 0.048 0.670 0.604 0.070 0.351 0.086 0.309 0.164 0.775 0.328 0.459 0.078 0.271 1.667 1.234 8.694 0.765 0.278 0.342 0.453 0.530 5.324 0.013 0.197 0.009 0.009 1448 chr3 186463046 186478500 + 0 NA Intergenic Intergenic -30588 NM_001967 1974 Hs.518475 NM_001967 ENSG00000156976 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 2.532 0.192 0.034 0.786 1.566 0.041 1.707 0.919 2.358 0.898 0.890 0.641 0.305 0.924 0.867 2.472 0.264 0.190 0.025 0.045 1.530 0.904 0.099 0.153 0.233 0.605 0.435 1.125 0.186 2.919 0.333 0.339 1.502 2.689 1.049 0.692 0.534 0.086 0.438 0.237 0.045 0.023 976 chr19 3171083 3178948 + 0 NA Intergenic Intergenic -3721 NM_003775 8698 Hs.662006 NM_003775 ENSG00000125910 S1PR4 EDG6|LPC1|S1P4|SLP4 sphingosine-1-phosphate receptor 4 protein-coding 1.377 1.014 3.331 1.616 2.971 0.288 3.449 1.692 4.844 1.517 1.802 1.293 1.008 3.877 0.820 2.994 0.486 0.457 0.037 4.486 6.600 0.310 0.592 1.066 0.409 0.286 2.429 0.596 1.428 0.818 0.362 2.336 5.972 2.098 2.526 1.008 0.367 3.381 1.894 0.044 0.046 283 chr11 206194 211363 + 0 NA promoter-TSS (NR_106801) promoter-TSS (NR_106801) -558 NR_106801 102465445 NR_106801 ENSG00000177963 MIR6743 hsa-mir-6743 microRNA 6743 ncRNA 4.620 6.376 1.702 1.645 4.969 4.119 4.698 2.669 8.627 6.861 7.147 1.766 1.709 3.096 4.023 5.938 1.312 2.572 2.247 2.921 2.669 3.739 3.902 3.759 8.609 7.695 3.618 2.537 4.272 5.844 4.143 3.832 2.902 8.407 5.877 2.354 2.590 6.761 2.880 3.844 2.852 1.543 1570 chr5 131778369 131787719 + 0 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 36579 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 0.313 0.565 7.201 0.299 0.345 0.094 0.088 0.214 0.430 0.124 0.811 0.379 0.038 0.582 1.012 0.782 2.487 0.410 0.085 0.029 0.332 0.107 0.078 0.087 0.934 0.091 0.108 0.140 0.214 0.205 0.288 0.404 2.977 0.298 0.118 0.835 1.927 0.159 0.364 0.101 0.049 0.033 80 chr1 70818356 70821754 + 0 NA promoter-TSS (NM_001031693) promoter-TSS (NM_001031693) 362 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 5.023 4.098 0.860 1.640 4.857 5.695 7.409 1.901 8.267 4.383 5.011 3.629 1.736 3.216 4.384 4.553 1.298 2.967 1.689 1.842 3.352 3.607 2.482 2.393 5.832 3.511 1.720 6.787 3.669 2.296 4.321 1.277 2.057 10.869 5.395 1.086 2.843 5.062 2.906 2.079 4.652 2.897 369 chr11 78492197 78535240 + 0 NA intron (NM_001098816, intron 15 of 33) intron (NM_001098816, intron 15 of 33) -227809 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 0.045 0.078 0.108 0.018 0.027 0.040 0.168 0.015 7.321 1.985 3.462 0.754 1.243 0.066 0.130 0.889 0.014 1.618 0.749 0.006 2.835 2.214 0.021 0.055 0.197 0.035 0.024 0.142 0.193 0.159 0.041 1.859 0.808 0.028 1.933 0.065 0.330 0.043 0.283 0.071 0.011 0.013 1887 chr8 116064856 116071734 + 0 NA Intergenic Intergenic 611944 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 0.909 0.999 0.054 0.992 1.816 0.027 1.499 1.049 1.868 0.842 0.214 5.140 1.599 1.602 0.070 3.081 0.848 2.761 0.103 1.562 1.426 0.094 0.086 0.133 0.157 0.023 0.649 5.096 0.047 0.358 0.206 0.134 1.162 0.094 0.053 0.156 0.028 1.297 0.888 0.276 0.315 873 chr17 46123879 46128413 + 0 NA intron (NM_001330262, intron 1 of 4) CpG 460 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 6.236 7.259 4.370 2.094 5.168 4.176 5.089 1.935 8.551 5.929 3.842 2.786 3.896 4.538 4.493 4.964 1.847 3.978 1.323 2.170 4.748 4.851 3.082 5.021 7.450 8.909 4.372 1.809 5.756 6.713 6.877 3.565 3.352 5.556 4.104 2.188 3.664 6.658 3.040 3.101 3.394 1.896 1371 chr3 39181687 39196348 + 0 NA promoter-TSS (NM_001320559) promoter-TSS (NM_001320559) -96 NM_001320559 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 3.482 2.352 1.329 0.898 2.293 2.104 3.357 1.894 6.866 3.937 2.601 1.611 0.861 1.079 2.237 1.874 1.753 3.671 0.758 0.460 0.654 0.521 0.720 1.069 2.629 3.013 1.241 1.428 2.917 2.047 1.990 1.057 1.284 4.479 0.954 0.623 1.405 2.162 1.516 2.693 1.340 0.768 1527 chr5 33309578 33317767 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -127130 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 0.465 0.401 0.007 4.201 6.128 0.130 4.613 2.353 3.646 1.069 1.344 3.329 1.383 3.093 0.294 2.415 0.122 0.374 0.086 0.034 0.160 0.044 0.009 0.157 0.374 0.096 0.124 0.138 0.171 0.109 0.017 0.145 0.390 3.608 0.437 0.555 0.375 0.093 3.461 0.305 0.028 0.044 1533 chr5 34708837 34719870 + 0 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 26689 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 0.448 0.492 0.056 0.284 0.549 0.335 0.160 0.536 0.506 0.100 0.527 0.423 1.323 0.217 1.497 0.576 0.468 0.483 0.081 0.144 0.046 0.247 0.103 1.647 3.713 1.848 0.091 2.788 0.255 1.131 0.157 0.129 0.385 0.772 0.077 0.067 0.285 0.165 1.806 6.104 5.922 787 chr17 6914292 6919480 + 0 NA intron (NR_037715, intron 2 of 3) intron (NR_037715, intron 2 of 3) 1150 NR_037717 100529209 Hs.511801 NR_037717 ENSG00000161939 RNASEK-C17orf49 - RNASEK-C17orf49 readthrough ncRNA 2.814 3.299 2.927 2.503 7.004 4.867 3.540 1.323 6.664 4.855 5.297 1.200 1.962 3.612 5.215 3.183 1.693 3.007 3.050 2.797 2.239 2.901 1.864 5.706 11.670 4.931 2.058 4.721 5.576 7.058 6.643 3.295 2.597 10.593 8.276 3.229 2.475 8.596 5.760 3.366 4.013 2.979 1206 chr2 242030338 242043310 + 0 NA non-coding (NR_028050, exon 2 of 5) non-coding (NR_028050, exon 2 of 5) 4923 NR_138464 130916 Hs.159556 NM_182501 ENSG00000122085 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 0.742 0.737 0.178 0.277 0.955 0.335 0.745 0.350 2.643 1.433 2.978 0.445 0.713 0.801 1.305 2.465 0.236 0.510 0.802 0.235 2.634 2.884 0.483 1.347 0.560 0.683 0.461 0.692 0.440 2.892 1.095 0.968 3.184 0.669 1.042 0.434 2.745 1.108 0.656 0.579 0.295 0.215 941 chr18 9091578 9107062 + 0 NA Intergenic LTR9|LTR|ERV1 -3308 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 1.190 1.379 0.469 0.699 2.199 1.198 1.739 0.641 3.749 2.262 1.697 1.136 0.443 1.311 1.473 0.903 0.493 0.639 1.824 0.393 0.816 0.594 0.517 0.880 1.814 1.600 0.740 0.660 1.060 2.035 1.257 0.934 4.146 1.975 0.896 0.763 3.154 1.028 0.818 0.673 0.223 0.233 1006 chr19 34662089 34665530 + 0 NA intron (NM_001114093, intron 1 of 10) CpG 457 NM_001114093 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, mRNA processing body assembly factor protein-coding 9.349 8.277 5.518 2.191 7.023 7.967 6.530 1.908 7.753 6.005 5.338 2.118 2.257 3.216 5.926 3.203 3.894 4.331 2.151 2.815 3.870 5.289 7.577 4.814 8.546 8.713 4.090 1.886 6.793 13.297 18.473 4.534 3.669 10.373 3.755 3.563 4.173 6.822 3.117 3.079 2.142 1.227 754 chr16 71927597 71931328 + 0 NA promoter-TSS (NM_001270975) promoter-TSS (NM_001270975) 66 NM_014761 9798 Hs.232194 NM_014761 ENSG00000182149 IST1 OLC1 IST1, ESCRT-III associated factor protein-coding 5.129 6.350 1.031 2.038 7.037 9.756 5.186 1.018 4.605 3.526 4.704 2.220 2.687 2.518 5.736 3.038 3.903 4.223 4.427 4.636 4.640 4.929 3.215 3.817 10.580 10.353 4.428 3.195 4.381 7.675 10.609 4.115 5.583 6.446 4.711 2.318 3.278 6.186 3.573 2.662 3.084 1.892 1856 chr8 61590509 61593948 + 0 NA intron (NM_017780, intron 1 of 37) CpG 904 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 2.540 5.338 1.534 0.729 7.095 1.413 4.903 1.183 10.492 7.010 5.908 0.987 2.520 1.760 2.179 2.043 2.418 2.020 3.492 4.360 1.842 1.820 4.467 0.854 4.527 8.207 3.813 3.194 3.213 6.899 11.376 5.023 3.802 12.128 1.946 2.228 2.028 7.020 2.084 2.177 1.674 0.950 446 chr12 54365768 54395163 + 0 NA intron (NM_017409, intron 1 of 1) intron (NM_017409, intron 1 of 1) -1162 NR_047506 100874365 Hs.607141 NR_047506 ENSG00000251151 HOXC-AS3 - HOXC cluster antisense RNA 3 ncRNA 0.221 0.077 1.552 0.006 0.101 0.511 0.058 0.029 9.420 4.264 0.240 0.050 0.369 0.075 1.029 0.274 0.807 2.297 0.873 6.083 0.612 0.690 1.474 0.788 3.130 1.433 0.717 1.699 3.470 2.201 3.409 0.463 0.906 0.063 0.136 0.224 2.823 6.307 0.644 0.340 5.433 3.691 948 chr18 45522985 45536715 + 0 NA Intergenic Intergenic -72333 NM_001003652 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 0.220 2.169 0.009 0.014 0.062 7.667 0.104 0.065 0.427 0.141 0.221 0.032 0.138 0.120 0.499 0.108 1.003 0.210 0.176 0.066 0.277 0.179 0.299 6.117 5.293 0.854 0.386 0.072 0.690 3.462 0.326 1.457 4.101 0.042 0.088 2.581 1.664 2.590 1.191 0.205 1.523 1.245 770 chr16 88845999 88852705 + 0 NA intron (NM_001142864, intron 1 of 50) MER5B|DNA|hAT-Charlie 2276 NM_001142864 9780 Hs.377001 NM_001142864 ENSG00000103335 PIEZO1 DHS|FAM38A|LMPH3|Mib piezo type mechanosensitive ion channel component 1 protein-coding 6.290 6.244 0.499 1.387 5.165 4.063 3.279 1.071 1.991 1.118 2.194 1.653 1.213 1.387 3.574 2.584 1.136 3.102 1.008 1.234 2.961 3.329 2.974 1.881 8.018 10.878 4.845 1.291 2.310 4.509 7.773 1.392 2.418 5.748 3.085 0.753 3.014 4.258 2.245 2.598 1.365 0.590 959 chr18 56511969 56535725 + 0 NA Intergenic Charlie7|DNA|hAT-Charlie -5985 NM_018181 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 1.948 0.349 0.245 0.415 0.414 0.105 0.685 0.585 0.714 0.282 0.154 0.706 0.025 1.536 0.702 5.159 0.568 1.382 0.624 0.099 3.251 3.758 0.531 0.346 0.535 0.481 0.213 1.300 0.712 2.341 0.698 0.424 1.579 0.228 0.894 0.289 0.105 0.949 1.923 2.036 0.145 0.110 880 chr17 48607372 48626245 + 0 NA promoter-TSS (NR_135675) promoter-TSS (NR_135675) -693 NR_135675 105371824 Hs.683630 NR_135675 ENSG00000250286 LOC105371824 - uncharacterized LOC105371824 ncRNA 1.880 1.601 0.779 1.041 2.224 0.660 0.852 0.916 nan 2.488 2.193 0.759 0.612 1.080 1.453 2.147 0.718 0.993 0.492 0.132 1.618 1.411 0.573 1.728 0.996 0.738 0.421 0.801 0.797 2.958 1.395 2.195 2.366 1.653 0.635 1.786 2.190 1.758 0.665 0.227 0.247 0.164 1272 chr20 55175987 55184680 + 0 NA Intergenic AluSx|SINE|Alu -24025 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 0.677 0.072 4.189 0.108 0.351 2.214 1.322 0.787 2.230 0.770 1.297 0.867 0.014 0.871 3.110 1.041 1.298 0.075 0.037 0.016 0.257 0.076 0.061 0.092 0.488 0.069 0.063 2.056 0.148 0.500 0.032 2.639 2.370 1.091 0.106 0.986 3.137 0.357 0.443 0.114 0.020 0.012 1738 chr7 17157370 17175053 + 0 NA Intergenic Intergenic -172065 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 0.620 0.237 0.084 0.054 0.120 3.831 0.136 0.084 1.907 0.479 0.668 0.083 0.021 0.167 0.372 0.089 0.097 0.312 0.098 0.024 0.248 0.062 0.017 0.679 0.094 0.020 0.036 0.065 0.231 0.617 0.048 0.424 0.424 0.156 0.093 0.180 0.173 0.102 0.130 0.189 0.020 0.023 1 chr1 931445 938130 + 0 NA exon (NM_021170, exon 4 of 4) exon (NM_021170, exon 4 of 4) 765 NM_001142467 57801 Hs.154029 NM_021170 ENSG00000188290 HES4 bHLHb42 hes family bHLH transcription factor 4 protein-coding 5.539 3.174 2.429 0.795 3.454 2.180 4.477 0.728 nan 3.959 3.644 1.070 0.302 1.446 2.403 1.338 0.744 0.943 1.918 2.690 1.221 1.706 1.806 1.647 3.153 2.539 1.132 1.255 0.555 3.121 5.629 3.611 3.350 9.821 3.382 1.280 2.914 11.094 1.331 1.727 0.896 0.534 866 chr17 43440784 43463648 + 0 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 50796 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 2.822 2.099 2.962 0.673 1.067 4.626 0.940 0.814 nan 0.534 0.869 0.652 1.293 1.009 1.431 2.958 0.993 2.675 0.017 2.293 2.305 1.911 2.590 3.018 6.489 2.457 1.055 0.802 4.276 5.273 3.270 0.735 0.833 1.671 2.117 0.699 1.824 7.717 1.685 0.878 2.103 1.764 1548 chr5 56466886 56472461 + 0 NA promoter-TSS (NM_001203246) promoter-TSS (NM_001203246) -102 NM_022913 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 5.173 3.400 2.360 1.124 4.115 2.471 5.315 3.264 5.544 4.028 4.397 1.443 2.066 2.901 4.136 4.723 1.901 1.610 1.326 1.291 2.966 3.391 1.867 3.671 3.079 4.216 2.064 2.090 3.699 3.396 4.033 2.304 2.671 8.168 4.499 2.142 1.900 3.692 2.316 1.608 3.257 1.922 6 chr1 6278756 6282848 + 0 NA TTS (NM_012405) TTS (NM_012405) 14613 NM_207396 388591 Hs.716549 NM_173795 ENSG00000158286 RNF207 C1orf188 ring finger protein 207 protein-coding 1.680 0.277 6.794 1.264 3.246 0.471 1.773 1.243 nan 0.389 0.515 0.712 0.088 1.675 2.301 1.965 1.812 0.359 1.187 0.034 0.356 0.187 0.036 0.170 0.198 0.113 0.170 0.620 0.100 0.151 0.395 0.157 1.289 3.632 0.149 0.987 3.294 0.379 0.146 0.075 0.056 0.012 404 chr12 8111559 8143905 + 0 NA Intergenic AluSx3|SINE|Alu -38840 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 0.139 0.090 4.481 0.126 0.343 1.503 0.415 0.251 0.804 0.225 0.646 0.221 0.283 0.248 1.520 0.888 0.754 0.212 0.037 0.566 0.506 0.297 0.431 1.563 0.880 0.174 0.147 0.182 2.355 1.909 1.136 0.258 0.544 0.258 0.829 0.090 0.782 3.809 0.405 0.390 1.839 1.208 1173 chr2 178074413 178080502 + 0 NA promoter-TSS (NR_049831) promoter-TSS (NR_049831) 3 NR_039646 100616394 NR_039646 ENSG00000170144 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 4.503 5.132 2.715 1.620 4.543 4.767 4.936 1.801 8.162 6.462 5.306 2.067 1.975 2.595 7.574 4.747 2.604 2.870 2.395 3.319 3.950 4.979 1.938 6.773 6.622 5.348 2.285 2.472 4.247 3.513 3.874 2.514 3.637 5.794 5.967 2.357 1.907 4.788 3.363 3.218 3.111 1.990 364 chr11 74458623 74467912 + 0 NA intron (NM_001098638, intron 1 of 5) AluSc|SINE|Alu 3354 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 3.671 1.760 1.251 0.696 2.729 1.217 2.540 1.986 nan 2.186 2.718 0.912 0.875 3.037 2.479 2.289 0.772 0.950 0.344 0.463 1.669 1.731 1.005 0.560 3.260 2.383 1.417 1.944 2.667 1.516 1.690 1.739 1.966 1.948 4.913 0.824 1.076 2.728 1.342 1.225 0.434 0.263 891 chr17 60850097 60889078 + 0 NA intron (NM_001288780, intron 3 of 10) intron (NM_001288780, intron 3 of 10) 14427 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 0.841 2.078 0.131 0.712 1.346 0.174 0.927 0.606 9.481 4.408 1.261 1.740 0.457 1.719 2.204 2.297 0.235 1.107 0.137 0.043 0.995 0.697 0.143 0.399 0.947 0.145 0.058 0.686 1.797 0.631 0.139 1.013 1.890 2.010 1.531 0.977 1.981 0.754 1.346 1.481 0.612 0.388 1069 chr19 48216131 48234035 + 0 NA intron (NM_014601, intron 3 of 5) AluSx|SINE|Alu 8482 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 1.667 4.265 0.469 0.780 1.101 2.128 5.172 1.050 nan 1.853 2.645 0.743 0.812 1.862 1.385 2.965 2.592 1.356 0.121 0.147 1.471 1.520 0.685 0.300 2.686 0.580 0.299 1.081 0.331 3.161 0.856 1.514 1.364 1.739 2.457 0.561 0.780 0.966 1.346 1.662 0.055 0.037 944 chr18 9913184 9915823 + 0 NA intron (NM_194434, intron 1 of 5) CpG 548 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 7.254 9.110 4.010 1.874 9.661 7.164 7.537 1.502 10.167 9.224 9.157 2.573 2.287 2.279 8.013 3.561 3.923 2.993 3.729 2.703 2.033 2.714 5.140 5.087 15.132 6.762 2.675 2.792 7.496 7.447 12.585 6.035 7.345 14.394 5.003 3.694 7.236 14.138 3.583 4.389 2.594 1.533 1930 chr9 32663284 32675379 + 0 NA Intergenic Intergenic -33664 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 0.075 0.844 0.005 0.236 0.239 0.332 0.260 1.386 3.710 0.854 0.595 0.364 0.885 0.470 0.265 2.093 0.039 0.076 0.025 0.023 4.605 4.044 0.030 0.077 0.122 0.273 0.153 0.945 0.133 0.067 0.058 1.360 3.472 0.230 0.785 1.737 0.608 0.015 1.442 0.985 0.014 0.017 154 chr1 155033755 155037338 + 0 NA promoter-TSS (NM_005227) promoter-TSS (NM_005227) -667 NM_005227 1945 Hs.449913 NM_005227 ENSG00000243364 EFNA4 EFL4|EPLG4|LERK4 ephrin A4 protein-coding 1.369 2.044 0.311 0.813 2.860 1.866 1.442 0.499 1.849 0.731 2.525 1.666 1.325 0.639 0.876 0.848 0.563 0.611 0.782 0.880 0.714 0.631 0.839 1.402 1.081 0.589 0.331 0.489 0.392 1.822 2.049 8.440 3.221 2.732 1.261 0.753 1.684 6.714 1.008 0.466 0.807 0.443 904 chr17 73670864 73705252 + 0 NA intron (NM_001301855, intron 4 of 11) intron (NM_001301855, intron 4 of 11) -24789 NM_001003716 9400 Hs.632229 NM_004259 ENSG00000108469 RECQL5 RECQ5 RecQ like helicase 5 protein-coding 2.178 2.102 0.250 2.010 3.333 0.779 2.230 1.778 2.405 1.054 2.745 2.587 3.621 1.602 1.136 4.588 1.208 2.640 0.134 0.036 3.155 2.665 0.170 0.362 3.976 1.357 0.546 0.657 5.523 4.115 0.809 0.265 0.991 3.340 0.928 1.378 0.860 0.294 2.887 2.999 2.039 1.664 1492 chr4 129473341 129498384 + 0 NA Intergenic LTR81C|LTR|Gypsy 136691 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 1.386 0.488 0.170 0.257 0.401 2.144 0.685 0.783 1.220 0.436 0.607 0.452 0.698 0.609 0.295 1.072 0.201 1.643 0.279 0.032 0.961 0.597 0.212 1.123 0.361 0.298 0.162 0.674 3.400 1.918 0.336 2.699 0.759 0.312 0.899 0.234 0.263 0.104 0.575 0.183 0.915 0.683 456 chr12 57983927 57987135 + 0 NA intron (NM_024779, intron 1 of 9) intron (NM_024779, intron 1 of 9) 589 NM_001146258 79837 Hs.745011 NM_024779 ENSG00000166908 PIP4K2C PIP5K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding 3.092 1.516 0.607 0.708 2.069 0.767 1.878 1.151 4.202 3.561 3.147 0.518 0.333 1.468 1.612 1.234 0.925 2.020 1.444 0.521 1.276 0.899 0.844 0.792 0.974 0.891 1.091 12.798 0.800 2.430 2.149 1.749 1.331 2.630 1.731 1.101 1.985 3.373 0.790 0.335 0.215 0.144 427 chr12 27424599 27446342 + 0 NA intron (NM_015000, intron 1 of 13) L1M5|LINE|L1 38392 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 0.169 0.251 0.049 0.087 0.312 0.055 0.138 0.063 0.275 0.118 0.142 0.107 0.452 0.025 0.270 0.119 0.018 2.518 0.133 0.045 0.058 0.016 0.041 0.324 0.038 0.019 0.025 0.074 0.198 0.311 0.229 0.039 0.088 0.218 0.148 0.068 0.091 0.093 0.123 0.190 0.024 0.016 808 chr17 26970601 26975190 + 0 NA promoter-TSS (NM_014680) promoter-TSS (NM_014680) -718 NM_001321561 9703 Hs.151761 NM_014680 ENSG00000007202 KIAA0100 BCOX|BCOX1|CT101|FMP27 KIAA0100 protein-coding 2.829 3.988 0.675 0.915 3.403 4.335 2.197 0.827 9.246 6.031 3.430 0.956 1.345 1.761 2.558 1.869 1.168 0.929 2.214 1.206 1.884 1.638 1.603 5.157 3.450 4.060 2.382 1.086 2.669 5.734 2.051 5.872 3.125 3.231 2.018 1.682 2.662 5.981 2.090 0.862 1.074 0.602 945 chr18 19744968 19770935 + 0 NA intron (NM_005257, intron 3 of 6) AluSp|SINE|Alu 8553 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 4.869 0.532 1.568 0.253 0.498 0.068 0.697 0.319 0.383 0.383 0.365 0.237 0.199 0.252 0.905 0.340 0.085 2.306 0.382 0.027 0.266 0.220 0.100 0.133 0.402 0.230 0.201 0.154 0.536 0.574 1.351 0.586 0.376 0.480 0.619 0.230 0.597 0.401 0.317 0.428 0.104 0.069 1908 chr8 143314215 143319078 + 0 NA intron (NM_145003, intron 12 of 13) intron (NM_145003, intron 12 of 13) 36929 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 3.296 0.582 0.013 0.740 0.477 1.383 3.239 2.205 9.028 2.068 1.146 1.910 2.795 1.601 2.655 3.147 0.057 1.442 0.710 0.058 1.440 0.772 0.134 0.011 5.608 10.371 4.128 0.296 3.889 0.117 5.089 0.136 0.390 0.752 3.755 0.025 0.688 3.322 1.526 2.475 4.395 3.407 1031 chr19 39887273 39907746 + 0 NA promoter-TSS (NM_003407) promoter-TSS (NM_003407) 22 NM_003407 7538 Hs.534052 NM_003407 ENSG00000128016 ZFP36 G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36 ZFP36 ring finger protein protein-coding 5.349 6.245 1.526 1.784 4.712 4.244 4.030 1.597 7.493 4.724 3.148 1.778 1.937 2.507 3.163 2.793 2.433 3.165 3.639 1.112 3.007 3.591 4.244 4.268 3.374 8.079 4.129 1.919 2.961 11.379 12.057 1.913 2.996 9.427 2.274 3.102 3.566 4.896 0.769 2.153 1.272 0.734 1347 chr22 41838916 41846110 + 0 NA 5' UTR (NM_016272, exon 1 of 2) 5' UTR (NM_016272, exon 1 of 2) 514 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 7.815 6.261 2.072 1.911 5.173 7.271 6.543 1.806 9.817 8.261 6.100 2.209 1.859 2.789 6.651 3.238 2.817 2.565 2.344 4.513 2.533 3.007 2.460 5.538 7.491 5.546 2.438 2.724 4.747 5.379 5.309 4.278 4.995 4.673 4.076 2.437 4.262 7.195 4.921 3.423 2.666 1.417 1059 chr19 46219222 46235267 + 0 NA promoter-TSS (NM_001329634) promoter-TSS (NM_001329634) -490 NM_001329634 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 1.769 2.714 0.355 1.342 3.439 1.480 0.850 0.533 nan 1.249 1.320 1.037 0.508 0.882 2.506 2.828 0.885 1.824 0.466 0.579 0.724 0.674 1.092 1.006 5.363 1.132 0.607 0.469 0.693 3.269 4.846 1.099 1.196 3.972 1.166 0.676 1.086 1.458 1.352 0.597 0.370 0.274 208 chr1 225627521 225655823 + 0 NA Intergenic MIR|SINE|MIR -25115 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 1.870 0.370 0.036 0.884 1.311 0.045 0.496 0.664 5.048 1.106 0.338 1.181 0.088 1.077 1.309 2.893 0.162 1.068 0.212 0.078 1.117 0.491 0.105 0.807 0.300 0.179 0.116 1.169 0.846 1.112 0.231 0.839 1.357 1.706 0.374 0.976 0.389 0.122 1.391 0.565 0.529 0.648 1243 chr20 40919437 40925578 + 0 NA intron (NM_007050, intron 12 of 30) L2|LINE|L2 -391616 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 0.139 0.051 0.010 0.104 0.031 0.090 0.016 0.044 0.092 0.047 0.020 0.008 0.063 0.016 0.045 0.022 0.046 0.059 0.090 0.010 0.026 0.012 0.064 0.040 0.057 4.721 0.026 0.034 0.061 0.055 0.019 0.038 0.063 0.009 0.025 722 chr16 30378656 30390920 + 0 NA intron (NM_001324459, intron 2 of 8) AluSc8|SINE|Alu 1149 NM_001324458 29895 Hs.50889 NM_013292 ENSG00000180209 MYLPF HUMMLC2B|MLC2B|MRLC2|MYL11 myosin light chain, phosphorylatable, fast skeletal muscle protein-coding 3.562 3.848 1.327 0.495 2.115 1.500 2.285 0.489 3.727 1.969 1.709 0.906 0.529 1.444 3.145 1.210 0.598 1.363 3.402 0.906 1.064 1.001 1.719 2.011 2.479 1.543 0.637 0.805 1.697 2.493 3.824 2.182 2.047 3.021 1.988 0.539 0.912 2.827 1.404 1.289 1.282 0.844 645 chr15 68230297 68247524 + 0 NA Intergenic Intergenic -106527 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 0.084 0.107 4.029 0.033 0.128 0.037 0.092 0.079 0.480 0.201 0.099 0.260 0.016 0.082 0.262 0.120 0.114 0.108 0.012 0.064 0.092 0.038 0.141 0.167 0.203 0.010 0.032 0.045 0.155 1.184 0.080 0.106 0.436 0.302 0.092 0.053 0.096 0.063 0.152 0.145 0.020 0.003 1282 chr20 62326408 62340520 + 0 NA intron (NM_001134758, intron 5 of 6) intron (NM_001134758, intron 5 of 6) -5330 NM_001083113 84619 Hs.590868 NM_032527 ENSG00000197114 ZGPAT GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP zinc finger CCCH-type and G-patch domain containing protein-coding 3.751 6.026 0.166 1.218 3.470 4.348 1.839 1.208 8.073 4.678 2.602 2.077 3.597 2.844 2.149 2.534 0.780 1.221 0.574 0.885 2.215 2.688 1.033 1.364 13.862 6.862 2.941 1.641 5.642 2.250 5.855 0.944 1.097 2.265 5.563 1.253 0.797 6.290 2.616 3.762 3.026 2.474 552 chr14 23442904 23453214 + 0 NA 3' UTR (NM_001289097, exon 2 of 2) 3' UTR (NM_001289097, exon 2 of 2) -1627 NM_198086 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 4.687 6.284 2.200 1.359 4.567 9.990 7.069 4.941 16.381 12.381 7.378 5.391 2.668 4.694 2.312 5.846 1.104 4.541 0.275 1.384 5.183 6.745 2.109 3.535 9.530 6.259 2.692 5.702 5.435 5.564 3.659 1.941 3.232 4.234 8.030 2.846 0.729 6.578 6.275 6.506 5.053 3.006 1293 chr21 35050232 35060292 + 0 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 40478 NM_003024 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 1.438 0.421 4.103 0.245 1.571 0.359 0.420 0.449 2.346 0.966 1.407 0.364 0.176 0.108 0.850 0.779 1.590 1.082 0.250 0.041 0.740 0.311 0.441 0.930 0.350 0.569 0.513 0.551 0.291 0.235 0.540 0.110 0.301 2.173 0.676 0.377 0.398 0.127 0.823 0.105 0.727 0.491 1663 chr6 34189490 34220327 + 0 NA 5' UTR (NM_145902, exon 1 of 5) 5' UTR (NM_145902, exon 1 of 5) 258 NM_145902 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 4.971 2.387 0.679 1.309 3.920 4.277 2.398 1.949 3.884 2.652 1.499 2.076 1.454 1.823 4.662 6.042 0.443 2.231 0.502 1.030 2.441 2.264 0.648 1.950 6.893 3.607 1.506 1.295 7.102 2.075 6.325 1.908 1.716 3.856 4.056 0.841 1.196 5.514 1.454 1.008 3.250 3.274 215 chr1 231326731 231333478 + 0 NA intron (NM_001004342, intron 1 of 9) intron (NM_001004342, intron 1 of 9) -6731 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 0.132 0.035 0.028 0.129 2.555 0.116 0.110 0.858 0.211 0.619 0.228 0.087 0.192 0.043 0.466 0.028 0.137 0.138 0.020 0.393 0.054 0.033 0.102 0.147 0.148 0.058 0.195 0.164 2.094 0.058 7.136 1.235 0.139 0.966 0.108 0.069 0.049 0.319 0.078 0.051 0.008 1207 chr2 242283691 242296569 + 0 NA intron (NM_001008491, intron 13 of 13) intron (NM_001008491, intron 13 of 13) -5534 NM_014808 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 0.910 0.678 0.169 0.425 1.163 4.564 0.843 0.303 1.207 0.632 1.455 0.269 0.339 0.592 0.884 0.582 0.172 0.299 0.501 0.267 0.480 0.328 0.528 0.460 0.448 0.391 0.268 0.679 0.296 1.733 0.788 1.945 0.465 0.980 0.395 0.144 0.296 1.023 0.422 0.244 0.278 0.154 1739 chr7 17336308 17366532 + 0 NA intron (NM_001621, intron 2 of 10) intron (NM_001621, intron 2 of 10) 13144 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 1.977 0.875 0.108 0.220 0.577 2.902 1.702 0.265 3.675 2.907 3.299 0.460 0.726 1.001 1.215 0.427 0.738 0.693 0.561 0.014 1.405 0.933 0.095 1.102 0.749 0.172 0.106 0.630 0.446 0.738 0.344 1.527 1.944 0.625 0.777 0.603 1.166 0.752 1.283 0.849 0.063 0.024 1382 chr3 52309972 52323197 + 0 NA Intergenic MER84|LTR|ERV1 -3925 NM_025222 80335 Hs.194110 NM_025222 ENSG00000164091 WDR82 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A WD repeat domain 82 protein-coding 2.732 2.855 0.698 0.717 2.013 4.175 2.749 1.166 3.836 2.537 1.360 1.003 0.668 1.285 2.404 1.698 1.410 1.828 2.744 1.195 0.973 1.152 1.601 1.825 2.719 4.049 1.887 1.118 2.046 3.779 4.127 2.079 1.406 2.703 1.898 0.851 1.132 3.047 2.188 1.458 1.677 1.066 271 chr10 112284112 112297127 + 0 NA Intergenic Intergenic 32994 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 0.746 1.515 0.014 0.915 1.063 0.413 1.582 1.901 1.661 0.614 0.179 0.523 1.049 1.092 0.681 4.146 0.286 0.471 0.669 0.032 0.848 0.541 1.044 0.677 3.881 3.247 1.210 0.390 1.084 2.096 3.610 0.061 0.468 0.670 1.591 0.386 0.108 0.717 0.819 0.588 0.058 0.047 647 chr15 71077945 71105370 + 0 NA Intergenic Intergenic -35807 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 0.125 0.866 0.022 0.408 0.371 0.279 0.174 0.725 0.686 0.181 0.083 0.981 1.005 0.317 0.260 0.981 0.310 3.660 0.095 0.031 0.615 0.412 0.229 0.129 1.036 0.838 0.529 0.521 1.974 0.971 1.380 0.069 0.307 0.355 0.530 0.179 0.072 0.290 0.975 1.140 3.963 3.618 1104 chr2 10077771 10095638 + 0 NA Intergenic L1ME4a|LINE|L1 -5088 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 0.565 0.226 1.237 0.256 0.919 0.045 0.769 0.396 7.960 4.403 4.564 0.335 0.086 1.568 2.691 0.566 0.236 0.129 0.079 0.057 0.202 0.092 0.245 0.124 0.526 0.128 0.131 0.648 0.240 0.612 0.654 0.325 1.665 2.038 0.626 0.940 1.239 0.631 0.221 0.099 0.110 0.023 1297 chr21 36417805 36426316 + 0 NA promoter-TSS (NM_001754) promoter-TSS (NM_001754) -465 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 4.042 0.684 0.366 1.985 4.234 0.067 3.953 3.302 5.324 2.132 4.075 3.335 2.597 3.691 5.267 4.811 1.409 2.600 0.059 0.017 3.016 3.224 0.356 0.842 4.772 0.368 0.175 2.823 2.101 0.569 3.470 0.676 2.185 3.701 6.371 1.383 0.790 1.042 2.507 2.064 1.522 0.998 1712 chr6 138043671 138074835 + 0 NA intron (NR_121618, intron 1 of 2) intron (NR_121618, intron 1 of 2) 921 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LOC100507406 - uncharacterized LOC100507406 ncRNA 0.054 0.541 0.018 0.314 0.218 0.160 0.213 0.208 0.469 0.123 0.155 0.051 0.022 0.362 0.699 0.308 0.114 0.218 0.068 0.013 0.541 0.215 0.039 8.005 1.110 0.101 0.092 0.083 0.138 0.295 0.083 0.015 0.301 0.045 0.018 0.102 0.191 0.870 0.253 0.081 0.018 0.015 1288 chr21 16642824 16652836 + 0 NA Intergenic Intergenic -210704 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 0.476 0.093 7.533 0.147 0.832 0.069 0.108 0.470 0.851 0.250 1.563 1.081 0.012 0.500 0.513 0.128 0.890 0.040 0.014 0.014 0.021 0.029 0.059 0.037 0.060 0.024 0.242 0.178 0.155 0.043 0.063 0.670 0.420 0.044 0.086 0.842 0.029 0.071 0.008 0.017 1125 chr2 43378947 43438697 + 0 NA Intergenic L2b|LINE|L2 44923 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 1.423 0.520 0.015 1.432 2.295 0.103 1.136 0.895 nan 1.161 0.639 0.822 0.486 1.271 2.222 3.612 0.288 0.513 0.360 0.030 1.785 1.280 0.129 0.947 1.040 0.189 0.135 1.328 1.496 3.962 0.351 1.077 2.694 2.346 0.257 1.429 0.702 0.640 0.807 0.308 0.077 0.043 768 chr16 88362389 88371003 + 0 NA Intergenic Intergenic -127183 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 0.466 2.703 0.015 0.994 1.149 10.009 0.292 0.244 0.743 0.424 0.347 1.361 0.699 0.153 1.786 1.925 0.547 4.738 0.050 2.617 2.997 6.519 1.474 5.828 2.365 0.454 2.059 3.227 2.299 0.083 2.625 4.076 0.183 1.377 0.108 0.338 1.712 2.354 0.722 0.231 1424 chr3 168957955 168962533 + 0 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -94722 NM_001164000 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 4.860 0.286 0.055 0.082 0.181 1.141 0.073 0.140 0.170 0.052 0.828 0.058 0.306 0.384 0.839 0.101 4.090 0.067 0.519 0.061 0.063 0.808 1.516 0.111 6.870 2.853 0.050 0.561 0.053 2.788 0.103 0.028 0.163 0.212 0.054 0.994 0.035 0.320 0.013 0.032 246 chr10 43889698 43919674 + 0 NA promoter-TSS (NM_004966) promoter-TSS (NM_004966) 10 NM_001098204 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 2.317 3.481 0.580 0.744 2.322 2.176 3.433 1.284 5.991 2.827 1.577 0.844 1.164 1.779 2.855 2.893 0.812 0.935 1.244 2.106 1.421 1.645 0.820 2.642 4.859 3.471 1.438 1.006 2.134 2.790 3.373 2.399 2.161 3.880 2.840 1.469 1.363 3.294 2.111 3.027 2.893 1.971 96 chr1 94764113 94801481 + 0 NA Intergenic L1MB3|LINE|L1 -69481 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 3.060 0.360 0.565 1.524 2.236 2.113 2.246 1.922 1.477 0.402 1.113 1.945 0.979 1.387 3.885 2.741 0.743 1.606 3.799 0.011 2.454 1.856 0.044 0.944 2.672 0.819 0.390 1.355 1.140 0.730 0.355 0.448 1.264 1.957 6.910 0.216 0.521 0.864 1.526 0.844 3.368 3.415 1009 chr19 35737639 35744873 + 0 NA exon (NM_001260490, exon 2 of 7) exon (NM_001260490, exon 2 of 7) 1697 NM_001260490 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 6.424 0.539 5.438 1.528 4.118 3.386 3.173 1.181 5.685 3.719 3.880 1.561 0.115 2.326 2.947 1.699 1.873 0.013 2.123 1.841 1.003 0.870 1.533 0.036 4.130 4.195 1.834 1.678 0.140 0.529 2.935 2.289 1.615 5.909 0.787 2.604 3.368 1.762 0.960 0.744 0.024 0.042 1213 chr20 3183315 3191570 + 0 NA Intergenic AluY|SINE|Alu -2072 NM_001324238 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 2.450 3.672 0.948 1.034 2.507 1.526 1.023 1.637 6.446 3.905 2.749 1.615 0.900 2.528 2.286 2.030 1.155 2.067 2.872 1.811 2.607 2.774 2.447 4.132 2.711 5.273 2.504 1.651 1.807 4.690 3.330 1.422 2.705 1.493 2.373 2.150 2.427 3.307 3.532 1.152 1.563 0.826 1666 chr6 34854029 34858574 + 0 NA promoter-TSS (NM_005643) promoter-TSS (NM_005643) -453 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 5.354 2.823 0.899 0.840 3.762 1.356 2.103 1.547 4.318 3.360 4.173 1.521 0.674 1.326 4.118 4.263 0.670 1.628 1.140 1.374 1.916 1.397 0.742 1.322 2.338 2.157 1.708 0.980 1.349 2.078 3.976 2.640 1.863 9.397 3.529 0.754 1.607 4.047 1.655 1.212 0.786 0.390 755 chr16 73066036 73106533 + 0 NA intron (NM_001164766, intron 1 of 8) intron (NM_001164766, intron 1 of 8) -4010 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 1.249 3.333 0.643 0.745 2.136 5.501 2.299 0.542 5.826 3.240 2.487 1.021 0.846 0.916 2.016 2.463 0.714 1.561 3.493 1.321 2.708 2.544 1.111 2.396 4.389 4.105 1.781 0.824 2.137 3.253 1.392 1.612 2.847 3.464 4.453 0.817 1.615 1.087 0.993 0.853 1.280 1.185 678 chr16 375239 381862 + 0 NA intron (NM_003502, intron 2 of 10) AluSp|SINE|Alu 24126 NR_134879 8312 Hs.592082 NM_003502 ENSG00000103126 AXIN1 AXIN|PPP1R49 axin 1 protein-coding 1.300 0.816 0.009 0.517 1.598 1.332 3.278 0.634 6.911 3.318 2.447 0.507 0.766 0.831 1.094 2.741 0.275 0.724 0.695 0.073 1.868 1.512 0.339 1.173 1.092 0.416 0.219 2.224 0.347 3.782 0.885 4.814 3.485 3.120 2.613 0.495 2.164 0.149 1.318 0.133 0.356 0.239 1566 chr5 90666124 90681171 + 0 NA intron (NR_138072, intron 2 of 7) intron (NR_138072, intron 2 of 7) 2467 NM_001329671 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 2.347 4.875 2.909 0.956 2.255 2.463 3.650 1.983 4.371 4.535 3.728 1.298 1.409 2.743 3.990 1.882 2.128 1.494 0.823 0.672 2.154 1.990 0.370 3.441 2.047 1.887 0.965 1.771 1.175 1.369 1.823 2.484 2.281 2.098 4.173 1.480 1.165 1.241 1.923 1.922 2.055 1.710 1721 chr7 1593857 1600553 + 0 NA Intergenic AluSx1|SINE|Alu -1139 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 5.004 1.839 0.075 1.375 2.516 1.357 3.523 1.356 13.427 6.099 8.388 1.792 1.120 1.670 3.871 1.719 3.575 3.146 1.931 0.208 2.012 2.326 0.495 2.319 3.558 0.577 0.398 2.378 0.403 5.775 0.998 2.017 2.539 6.561 1.832 3.297 6.075 3.446 1.732 0.832 0.533 0.168 1466 chr4 10107000 10126364 + 0 NA intron (NM_017491, intron 2 of 14) intron (NM_017491, intron 2 of 14) 1891 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 0.865 1.527 1.018 0.771 1.814 0.550 1.232 0.530 1.274 0.847 1.098 0.747 0.806 0.607 0.942 1.982 0.321 0.617 0.340 0.229 0.935 0.989 0.858 0.217 3.155 1.219 0.527 0.672 1.906 0.690 1.799 0.492 0.444 3.644 1.360 0.328 0.424 1.572 0.627 1.088 0.657 0.297 1867 chr8 77584775 77600432 + 0 NA promoter-TSS (NM_024721) promoter-TSS (NM_024721) -912 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 0.842 0.135 4.322 1.316 3.389 0.230 0.112 0.430 5.644 2.496 0.239 0.214 0.369 1.712 0.068 0.142 0.061 2.605 0.058 3.119 0.428 0.217 0.864 0.338 0.459 0.061 0.069 0.211 0.719 0.504 3.648 0.136 0.050 2.595 0.030 0.078 0.174 0.465 0.055 0.010 0.022 0.016 1014 chr19 36388937 36398117 + 0 NA exon (NM_014266, exon 1 of 4) exon (NM_014266, exon 1 of 4) 145 NM_001007469 10870 Hs.117339 NM_014266 ENSG00000126264 HCST DAP10|KAP10|PIK3AP hematopoietic cell signal transducer protein-coding 1.670 2.820 1.127 0.639 2.159 1.302 1.826 0.529 2.676 1.627 1.392 0.750 0.663 1.226 1.344 1.175 1.494 0.985 1.016 0.724 1.813 1.446 2.612 0.935 2.740 2.211 1.097 0.310 0.805 3.666 9.277 1.385 1.081 2.473 1.259 0.761 0.903 2.791 0.564 1.632 0.634 0.354 534 chr13 74264883 74296257 + 0 NA intron (NM_007249, intron 7 of 7) intron (NM_007249, intron 7 of 7) 142189 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.719 0.137 0.045 0.060 0.138 0.020 0.104 0.080 6.491 2.072 1.016 0.116 0.030 0.160 0.236 0.132 0.091 0.103 0.054 0.005 0.141 0.053 0.031 0.050 0.126 0.044 0.018 0.106 0.127 0.231 0.052 0.116 0.606 0.092 0.027 1.002 0.483 0.035 0.055 0.061 0.015 0.007 498 chr12 121414849 121425030 + 0 NA intron (NM_001306179, intron 1 of 9) AluSx|SINE|Alu 3568 NM_000545 6927 Hs.654455 NM_000545 ENSG00000135100 HNF1A HNF-1A|HNF1|IDDM20|LFB1|MODY3|TCF-1|TCF1 HNF1 homeobox A protein-coding 1.039 0.088 0.018 0.037 0.093 0.098 0.060 0.040 0.475 0.111 0.147 0.086 0.048 0.020 0.114 0.216 0.019 0.091 5.354 0.151 0.204 0.138 0.109 0.105 0.181 0.024 0.062 0.430 0.167 10.756 0.104 5.358 0.131 0.089 0.064 0.145 0.105 0.258 0.047 0.007 0.023 0.005 958 chr18 56448160 56463189 + 0 NA Intergenic MIR|SINE|MIR -74158 NM_018181 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 2.492 0.436 0.553 0.933 0.981 4.285 0.465 0.568 1.332 0.626 0.101 1.899 0.126 2.217 1.794 5.461 0.653 3.802 0.093 0.018 2.925 3.012 0.241 0.315 0.571 0.268 0.103 1.421 1.585 6.191 0.178 2.582 2.193 0.575 1.570 0.261 0.414 0.423 1.919 3.335 0.353 0.189 41 chr1 31207784 31237620 + 0 NA intron (NM_006762, intron 1 of 7) intron (NM_006762, intron 1 of 7) 7981 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 0.421 0.494 0.021 0.599 0.640 0.075 0.200 0.452 5.034 0.851 0.152 0.657 0.677 0.497 0.458 0.440 0.269 0.217 0.067 0.067 0.501 0.261 0.062 0.149 0.846 0.241 0.186 0.268 0.429 0.188 0.294 0.034 0.148 0.333 0.198 0.147 0.050 0.293 0.303 0.585 0.069 0.032 1082 chr19 52691671 52695377 + 0 NA intron (NR_033500, intron 1 of 13) CpG 469 NM_014225 5518 Hs.467192 NM_014225 ENSG00000105568 PPP2R1A MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A protein phosphatase 2 scaffold subunit Aalpha protein-coding 4.733 5.875 2.158 1.177 5.286 5.462 4.587 1.591 5.860 4.108 5.021 2.735 2.622 7.589 5.586 3.549 3.437 4.457 1.820 1.843 1.833 2.129 0.832 4.150 7.960 4.074 1.702 1.615 4.172 5.804 3.685 4.149 2.030 5.005 1.884 2.822 2.705 4.603 5.619 3.048 3.154 2.500 1832 chr8 27490689 27495238 + 0 NA intron (NM_182826, intron 1 of 5) MER45A|DNA|hAT-Tip100 1386 NM_182826 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding 1.129 0.362 6.405 0.046 0.153 0.045 0.991 0.196 0.187 0.024 0.286 0.072 0.192 0.478 0.958 1.831 0.066 0.151 1.402 1.196 1.443 0.886 0.224 0.344 0.284 0.072 0.373 5.991 0.391 0.259 1.011 0.197 0.265 0.244 2.632 1.524 0.068 0.334 0.759 0.348 720 chr16 30063050 30088967 + 0 NA promoter-TSS (NM_001243177) promoter-TSS (NM_001243177) 190 NM_001127617 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 3.033 3.817 1.012 0.835 2.421 2.975 2.273 0.644 4.046 2.122 2.146 1.402 1.054 2.486 3.250 1.904 1.457 1.810 3.453 1.049 1.419 1.672 1.817 3.305 3.406 2.172 0.953 1.308 2.361 2.458 2.498 2.753 3.527 2.990 3.348 0.956 1.636 3.775 2.215 1.862 1.684 1.062 1368 chr3 17780363 17785366 + 0 NA promoter-TSS (NM_014744) promoter-TSS (NM_014744) -465 NM_014744 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 4.019 4.189 1.818 1.248 3.699 4.984 6.909 2.572 4.597 3.091 2.452 1.605 1.696 2.551 3.240 2.826 3.138 4.934 2.136 2.536 2.725 3.291 1.916 7.503 5.014 8.746 3.987 2.440 6.623 7.258 4.911 2.795 2.655 4.018 5.474 2.364 1.752 3.175 5.424 3.400 3.624 2.944 402 chr12 7045985 7057159 + 0 NA TTS (NM_001940) TTS (NM_001940) -1029 NM_001301836 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 3.117 2.131 1.043 0.645 2.257 3.388 2.508 0.819 7.668 4.309 2.465 0.754 0.614 1.710 2.944 1.160 0.735 1.079 2.108 1.037 1.502 1.314 0.708 1.489 2.043 1.118 0.482 1.279 2.557 4.354 3.817 1.077 1.635 2.394 1.911 1.282 1.455 6.340 1.202 0.564 1.103 0.770 1046 chr19 44097277 44102499 + 0 NA promoter-TSS (NM_024327) promoter-TSS (NM_024327) 399 NM_001007561 126298 Hs.6217 NM_001007561 ENSG00000167378 IRGQ FKSG27|IRGQ1 immunity related GTPase Q protein-coding 3.373 3.650 0.501 1.493 3.376 2.068 2.706 0.685 nan 2.663 4.117 1.344 1.949 1.903 2.490 1.748 1.447 2.835 1.072 0.911 2.075 2.254 3.045 1.951 3.878 1.793 0.884 0.791 2.501 3.605 9.369 2.505 1.251 5.765 0.768 1.574 1.943 3.185 1.572 0.978 1.952 1.365 1497 chr4 148671108 148717189 + 0 NA intron (NM_024605, intron 1 of 22) intron (NM_024605, intron 1 of 22) -9598 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 0.175 0.178 0.084 0.893 1.692 0.072 0.564 0.571 3.093 1.320 0.498 0.739 0.121 0.539 0.463 1.652 0.506 0.789 0.022 0.024 0.242 0.077 0.109 0.080 0.318 0.211 0.127 0.759 0.136 0.230 0.144 0.085 0.454 0.544 0.204 0.170 0.936 0.068 0.315 0.043 0.016 0.014 365 chr11 75033923 75064439 + 0 NA intron (NM_020251, intron 1 of 14) L2b|LINE|L2 -2951 NR_029891 442900 NR_029891 ENSG00000199090 MIR326 MIRN326|hsa-mir-326|mir-326 microRNA 326 ncRNA 0.177 1.385 0.086 1.106 1.781 0.233 0.222 0.727 7.660 2.236 2.454 0.969 0.638 1.016 1.281 2.459 1.188 0.837 2.288 0.068 1.363 0.875 0.338 0.353 3.306 0.472 0.342 0.813 0.272 1.714 0.471 1.168 4.531 1.959 6.420 0.265 4.458 2.601 1.734 0.275 0.059 0.027 1098 chr2 2663234 2669197 + 0 NA Intergenic L3|LINE|CR1 -331130 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.037 0.037 0.032 0.053 0.022 0.069 0.018 0.262 0.583 0.108 0.074 0.037 0.080 0.907 0.045 0.016 0.047 0.011 0.012 0.084 0.138 0.078 0.066 0.063 0.193 0.181 0.012 5.709 2.796 0.060 0.030 0.194 0.125 0.029 0.027 0.169 0.087 0.114 310 chr11 46292154 46304516 + 0 NA promoter-TSS (NM_052854) promoter-TSS (NM_052854) -854 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 0.321 1.891 0.015 0.536 0.613 0.072 0.127 0.230 10.535 4.748 2.560 0.307 0.259 0.889 0.327 1.713 0.047 1.136 2.300 0.303 2.370 2.141 0.196 0.040 0.196 0.572 0.335 0.050 1.296 1.200 1.143 7.167 3.103 0.262 0.307 0.514 0.355 0.525 1.378 2.370 0.033 0.008 993 chr19 14089297 14099421 + 0 NA exon (NM_002918, exon 3 of 21) exon (NM_002918, exon 3 of 21) 22775 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 0.093 0.605 0.183 1.103 2.004 0.050 4.348 1.082 nan 3.367 1.880 0.505 0.686 2.433 0.142 1.724 0.038 0.072 1.454 0.015 1.913 2.323 0.196 0.116 0.171 0.447 0.309 2.285 0.202 0.193 0.255 0.008 0.067 2.521 0.073 0.049 0.139 0.206 0.528 0.202 0.028 1247 chr20 42831065 42841032 + 0 NA intron (NM_016470, intron 1 of 3) intron (NM_016470, intron 1 of 3) 3498 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 5.514 2.846 0.791 1.324 4.061 3.052 2.675 1.205 3.437 2.529 2.793 1.635 1.238 1.577 5.380 2.005 2.769 2.050 0.542 0.841 1.626 1.415 0.975 4.711 6.096 2.184 1.155 1.935 2.507 1.857 1.478 1.127 3.446 4.857 7.510 2.047 3.073 2.666 2.672 2.584 2.716 2.034 182 chr1 164558683 164573785 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 37637 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 0.408 0.879 2.577 0.442 0.821 0.056 0.257 0.014 0.924 0.317 0.798 0.058 0.273 0.125 1.338 0.404 0.765 0.717 0.147 0.017 0.222 0.139 0.035 0.846 0.073 0.028 0.041 0.540 0.165 0.507 0.023 0.326 1.406 1.238 0.031 1.249 2.858 0.078 0.632 0.015 0.032 0.017 1841 chr8 37739460 37775192 + 0 NA promoter-TSS (NM_025151) promoter-TSS (NM_025151) -311 NM_025151 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 4.640 0.291 2.364 0.377 0.708 0.078 1.832 1.664 2.392 0.989 2.502 0.791 0.155 1.714 1.600 1.303 0.219 0.257 0.472 0.245 1.158 0.779 0.118 0.106 0.379 0.276 0.281 1.167 0.221 0.799 0.340 0.124 0.602 1.873 0.770 0.752 0.930 0.315 0.359 0.141 0.069 0.033 47 chr1 35448978 35453320 + 0 NA promoter-TSS (NM_001195156) promoter-TSS (NM_001195156) -201 NM_001195156 100506144 Hs.533986 NM_001195156 ENSG00000243749 TMEM35B ZMYM6NB transmembrane protein 35B protein-coding 3.248 2.554 0.528 0.305 1.344 1.960 1.517 0.749 2.875 1.349 0.926 0.810 1.140 1.104 1.158 3.770 1.123 2.048 0.020 2.090 1.845 2.362 1.370 1.634 3.694 2.609 1.206 0.751 2.978 2.218 3.841 0.183 0.916 0.588 3.236 9.020 0.859 3.514 0.822 1.893 1.432 0.949 256 chr10 70975683 70995375 + 0 NA intron (NR_120648, intron 2 of 4) intron (NR_120648, intron 2 of 4) 5470 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 1.864 1.146 0.003 0.535 0.629 1.468 1.561 1.211 1.822 0.806 0.244 0.281 0.287 1.648 3.516 3.344 0.531 0.788 0.069 0.042 1.600 1.261 0.940 0.384 4.799 0.205 0.150 0.656 1.941 1.367 0.170 1.440 1.676 0.523 0.268 2.669 0.222 0.274 1.521 0.533 1.234 0.494 1810 chr7 114766465 114794836 + 0 NA intron (NR_126407, intron 2 of 4) THE1C|LTR|ERVL-MaLR 61638 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 0.290 0.164 0.143 0.081 0.194 0.031 0.568 0.134 2.190 0.570 4.849 0.500 0.012 0.261 0.839 0.315 0.216 0.144 0.035 0.357 0.084 0.005 0.093 0.068 0.006 0.014 0.160 0.113 0.123 0.043 0.064 1.425 0.174 0.082 0.307 0.573 0.026 0.105 0.054 0.012 0.013 665 chr15 90291666 90330267 + 0 NA Intergenic Intergenic -8623 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 1.483 0.445 0.137 0.314 0.479 0.568 0.249 0.485 0.937 0.353 0.381 0.216 0.034 1.427 3.383 1.087 0.546 0.476 0.086 0.135 0.451 0.262 0.484 0.293 0.843 0.197 0.151 0.230 0.671 1.175 0.620 0.304 0.968 0.272 0.184 0.661 1.871 0.849 0.399 0.219 0.107 0.052 1363 chr3 11264398 11268801 + 0 NA intron (NM_001098212, intron 1 of 1) intron (NM_001098212, intron 1 of 1) -1070 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 1.679 2.805 1.280 3.011 2.893 6.363 2.566 4.494 3.613 1.457 1.491 1.580 2.677 1.788 2.481 0.820 3.481 0.969 0.031 1.650 1.878 0.033 1.728 5.145 7.809 2.598 1.730 4.719 1.296 0.964 1.218 2.271 4.003 3.765 1.193 0.281 0.527 3.484 2.814 2.576 2.299 502 chr12 123203725 123216647 + 0 NA Intergenic AluJb|SINE|Alu 4943 NM_032554 27198 Hs.610873 NM_032554 ENSG00000196917 HCAR1 FKSG80|GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR hydroxycarboxylic acid receptor 1 protein-coding 1.397 0.223 0.989 0.743 1.738 0.059 3.251 2.472 2.925 1.589 1.454 1.625 0.147 1.032 2.788 4.479 1.283 1.241 0.039 0.033 1.676 0.943 0.098 0.132 0.370 0.189 0.138 5.184 0.551 0.369 0.154 0.492 0.728 1.598 0.245 0.511 0.345 0.302 1.248 0.295 0.045 0.019 1062 chr19 46752633 46776773 + 0 NA Intergenic Intergenic 31694 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 0.108 0.131 0.072 0.016 0.090 0.138 0.478 0.103 nan 2.741 2.243 0.139 0.117 0.059 1.536 0.203 0.337 0.376 0.075 0.034 0.126 0.069 0.056 0.109 0.174 0.027 0.039 0.393 0.149 0.305 0.067 0.350 0.208 0.296 0.115 0.183 0.541 0.221 0.092 0.062 0.065 0.045 548 chr14 20760298 20774619 + 0 NA exon (NM_138376, exon 4 of 10) exon (NM_138376, exon 4 of 10) 6695 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 0.358 0.243 0.017 0.623 0.847 0.101 0.352 0.384 2.442 1.252 0.386 0.928 0.083 0.962 0.229 1.210 0.053 0.546 0.041 0.061 0.305 0.165 0.066 0.542 0.133 0.127 0.114 0.530 0.267 0.230 0.204 0.088 0.257 0.362 2.940 0.119 0.104 0.183 0.835 0.127 0.044 0.021 1536 chr5 38547806 38558068 + 0 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 3811 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 0.465 1.126 0.140 1.381 4.093 0.532 1.462 0.420 3.146 2.192 3.362 1.188 1.120 0.603 0.369 1.652 0.195 3.414 0.796 0.351 0.989 0.907 0.563 1.481 0.574 0.751 0.524 0.824 0.359 1.444 1.501 1.975 0.970 3.409 5.100 0.513 0.385 3.003 1.921 0.695 0.610 0.397 1538 chr5 40832939 40843582 + 0 NA Intergenic Intergenic -2873 NM_000997 6167 Hs.447582 NM_000997 ENSG00000145592 RPL37 L37 ribosomal protein L37 protein-coding 2.259 1.968 0.629 3.089 6.127 1.916 3.838 2.213 7.731 5.182 4.290 1.934 1.750 2.252 6.643 4.105 1.582 3.163 0.331 1.649 2.590 2.230 0.693 6.232 1.872 3.008 1.633 1.944 1.345 2.235 1.882 4.110 4.674 5.272 2.255 2.873 1.702 4.369 4.282 1.644 1.391 1.125 344 chr11 65773379 65790753 + 0 NA Intergenic AluY|SINE|Alu 2604 NM_001323 1474 Hs.139389 NM_001323 ENSG00000175315 CST6 - cystatin E/M protein-coding 4.633 2.470 0.918 0.743 1.814 0.174 0.784 1.847 3.843 1.902 1.214 1.179 1.422 4.291 1.648 3.928 0.898 0.541 0.155 0.056 1.960 1.754 0.376 0.117 5.894 5.304 2.394 1.107 4.453 0.423 1.566 0.068 0.787 1.802 2.655 0.317 0.684 0.422 0.766 1.270 1.203 0.847 266 chr10 104208950 104217124 + 0 NA intron (NR_038937, intron 4 of 4) intron (NR_038937, intron 4 of 4) -1737 NM_024886 79946 Hs.225084 NM_024886 C10orf95 - chromosome 10 open reading frame 95 protein-coding 1.224 2.979 0.477 1.816 3.797 0.830 5.751 2.254 9.446 6.854 2.380 0.843 0.807 3.514 1.335 4.660 0.713 1.336 1.645 0.746 2.460 2.815 0.671 0.863 1.847 1.373 0.904 2.873 0.512 1.814 2.366 0.730 1.998 5.354 3.775 1.578 1.320 2.330 2.157 0.611 0.458 0.370 925 chr17 78861852 78869144 + 0 NA intron (NM_020761, intron 17 of 33) intron (NM_020761, intron 17 of 33) -86066 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 0.541 4.200 1.848 3.954 0.971 2.729 2.072 1.838 0.836 0.511 4.551 3.281 3.700 0.438 6.435 0.563 2.311 0.028 0.076 1.577 1.664 0.116 2.014 9.646 1.281 0.471 1.995 10.084 0.442 0.350 0.075 1.250 3.932 4.137 0.706 0.113 0.569 3.445 6.805 3.949 3.032 395 chr12 3065853 3070926 + 0 NA promoter-TSS (NM_003213) promoter-TSS (NM_003213) -89 NM_003213 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 4.389 4.920 2.754 0.746 2.058 4.294 4.721 1.016 5.173 2.216 1.706 0.636 0.795 2.628 2.983 1.635 1.350 1.833 0.685 1.526 1.893 2.664 2.734 2.523 5.515 5.356 2.078 2.135 3.599 6.484 7.313 2.143 1.871 3.088 3.185 1.035 2.362 14.773 1.591 1.345 3.323 2.011 1630 chr6 19410455 19419554 + 0 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -35048 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 1.219 0.179 0.055 1.880 4.022 1.473 1.661 1.246 1.578 0.865 1.702 1.956 0.144 1.612 1.154 1.852 0.806 0.040 0.033 0.030 0.903 0.574 0.032 0.108 2.682 0.206 0.103 0.802 0.144 0.098 0.055 0.182 0.890 2.076 0.010 1.414 0.382 0.089 2.420 0.448 0.032 0.005 2004 chrX 103553765 103588378 + 0 NA Intergenic AluSx|SINE|Alu -71472 NM_153448 80712 Hs.223782 NM_153448 ENSG00000123576 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 0.289 0.411 0.014 0.843 0.926 0.122 1.019 1.467 0.710 0.211 0.362 1.211 1.148 0.468 2.214 4.356 0.116 0.902 0.101 0.016 0.845 0.376 0.011 0.462 3.086 1.033 0.647 1.181 0.280 0.171 0.029 0.094 0.440 0.586 0.265 0.216 0.108 0.067 0.837 0.504 0.005 0.004 231 chr10 3933856 3945084 + 0 NA Intergenic Arthur1|DNA|hAT-Tip100 63328 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 0.306 0.181 0.008 0.691 0.520 0.582 0.498 0.825 0.418 0.166 0.404 0.182 0.094 0.752 0.169 0.896 0.068 0.494 0.018 0.099 0.838 0.335 0.053 0.226 0.163 0.194 0.139 0.156 0.152 0.703 0.366 2.964 0.664 0.399 0.214 0.413 1.036 1.170 0.945 0.153 0.248 0.179 1761 chr7 56126666 56133628 + 0 NA intron (NM_001762, intron 12 of 13) intron (NM_001762, intron 12 of 13) -1770 NM_001146333 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 3.839 1.813 1.157 0.407 1.580 1.678 2.809 0.955 2.768 2.557 10.778 0.400 1.120 0.958 4.661 2.234 1.416 3.657 1.137 1.252 1.701 1.780 1.256 0.811 2.869 1.660 0.864 2.092 3.191 1.880 3.297 1.052 1.344 1.088 4.358 1.503 0.734 2.588 4.290 2.624 6.026 5.952 1988 chr9 139791580 139800441 + 0 NA intron (NM_021138, intron 4 of 10) L1MB3|LINE|L1 14825 NR_039697 100616480 NR_039697 ENSG00000266507 MIR4479 - microRNA 4479 ncRNA 2.709 4.589 0.721 3.518 6.559 1.028 6.883 1.692 0.764 0.364 1.016 2.483 1.376 1.702 1.336 2.581 0.228 0.647 2.245 0.031 3.570 4.460 1.392 3.716 11.760 2.713 1.103 3.245 4.898 5.654 1.818 3.328 3.806 6.824 0.564 0.624 7.681 2.822 0.933 1.310 2.554 2.594 620 chr14 105880905 105889180 + 0 NA non-coding (NR_125384, exon 2 of 3) non-coding (NR_125384, exon 2 of 3) 1034 NR_125385 100507437 Hs.676548 NR_125384 ENSG00000251602 LOC100507437 - uncharacterized LOC100507437 ncRNA 1.638 1.418 0.404 0.274 0.880 2.887 0.872 0.418 5.034 3.075 2.838 0.724 0.570 0.581 1.098 1.088 0.684 0.909 0.817 1.891 1.748 1.911 1.089 2.207 1.702 2.294 1.252 0.731 0.676 3.511 6.179 0.783 2.570 0.690 2.531 0.797 1.862 3.795 0.875 1.886 0.960 0.412 604 chr14 75915495 75929617 + 0 NA intron (NM_001135049, intron 2 of 3) LTR33|LTR|ERVL 23719 NM_001135049 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 0.949 0.265 2.406 0.097 0.170 0.143 0.129 0.713 0.278 1.409 0.352 0.033 0.106 5.819 0.307 1.279 0.132 0.099 0.108 0.375 0.108 0.339 0.243 1.467 0.307 0.172 0.608 0.262 1.087 0.137 0.034 0.606 0.146 0.085 0.130 1.736 0.206 0.084 0.289 0.069 0.051 442 chr12 51661183 51667159 + 0 NA promoter-TSS (NM_001033873) promoter-TSS (NM_001033873) 31 NM_001031628 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 4.309 1.914 2.027 1.522 3.408 0.658 5.355 2.507 3.733 1.621 2.093 2.059 2.337 3.176 3.890 4.653 1.053 2.175 0.049 0.833 3.603 4.808 0.978 0.470 3.965 3.832 1.864 3.052 8.403 3.296 6.638 0.423 2.439 3.594 13.528 1.438 1.993 3.102 2.953 2.111 4.250 4.193 1028 chr19 39419391 39423086 + 0 NA promoter-TSS (NM_021107) promoter-TSS (NM_021107) -110 NM_033362 6183 Hs.411125 NM_021107 ENSG00000128626 MRPS12 MPR-S12|MT-RPS12|RPMS12|RPS12|RPSM12 mitochondrial ribosomal protein S12 protein-coding 4.183 4.177 0.842 1.589 3.726 3.283 2.589 0.821 4.355 3.004 2.552 1.296 2.137 2.448 3.263 2.042 2.231 3.190 1.242 0.973 2.495 2.405 3.547 3.310 5.437 11.666 6.332 1.078 2.306 6.400 7.727 3.724 2.018 4.389 2.595 2.204 3.235 3.849 1.772 1.147 1.934 1.390 1990 chr9 140185940 140196646 + 0 NA Intergenic Intergenic 5410 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 1.715 0.880 0.242 0.177 0.530 0.024 1.505 0.234 2.695 1.241 0.112 0.137 0.044 0.133 1.111 0.329 0.142 0.369 0.711 0.367 0.449 0.223 0.613 0.291 1.070 0.396 0.311 0.090 0.329 1.475 1.598 2.726 2.437 0.741 0.602 0.160 1.312 2.777 0.261 0.058 0.221 0.161 753 chr16 69597206 69603801 + 0 NA promoter-TSS (NR_031719) promoter-TSS (NR_031719) 634 NM_173215 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T-cells 5 protein-coding 4.285 6.346 1.635 1.489 4.481 7.061 4.630 1.315 2.540 2.161 3.509 1.910 1.775 1.589 5.480 2.296 3.230 3.008 1.889 3.486 4.292 4.648 3.547 2.159 8.590 10.089 4.528 2.759 3.938 6.377 5.025 2.942 3.700 6.381 4.628 1.575 1.757 5.222 2.992 2.129 2.585 1.938 882 chr17 48939920 48947083 + 0 NA promoter-TSS (NR_038458) promoter-TSS (NR_038458) 214 NM_001243885 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 5.716 5.265 6.205 1.401 4.499 3.213 3.198 1.451 nan 6.621 5.621 1.066 2.016 2.178 6.939 1.851 1.717 2.118 1.961 2.855 2.045 2.863 2.669 4.648 6.045 1.779 1.086 1.868 3.318 7.255 6.285 4.180 4.896 8.339 2.008 2.884 5.163 6.112 2.598 1.849 2.460 1.562 1933 chr9 35069263 35081450 + 0 NA intron (NM_004629, intron 10 of 13) intron (NM_004629, intron 10 of 13) -2617 NM_007126 7415 Hs.529782 NM_007126 ENSG00000165280 VCP ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 valosin containing protein protein-coding 1.719 2.696 1.115 0.562 2.126 1.536 1.600 0.363 3.035 1.981 2.084 0.816 0.620 0.949 1.583 1.946 0.797 1.332 0.806 1.012 1.649 1.821 1.502 2.082 2.520 2.860 1.305 0.924 2.001 2.715 3.628 1.367 1.883 2.530 2.331 1.090 1.330 6.449 0.976 1.101 1.569 0.943 1633 chr6 19800185 19815078 + 0 NA Intergenic LTR12C|LTR|ERV1 -2641 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 0.381 0.816 2.308 0.305 0.687 8.159 0.362 0.099 1.912 0.566 2.850 0.372 0.485 0.389 0.232 0.756 0.352 0.801 0.258 0.577 1.087 0.887 0.810 1.941 2.813 0.259 0.133 0.175 0.375 2.374 1.377 1.636 1.225 1.894 0.510 0.961 1.741 2.360 0.695 0.510 0.035 0.007 782 chr17 2285912 2312059 + 0 NA intron (NM_020310, intron 1 of 5) intron (NM_020310, intron 1 of 5) 5273 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 1.497 2.210 0.754 1.401 3.088 2.386 3.109 1.003 5.055 2.850 2.789 0.699 1.028 2.103 1.992 2.236 0.840 1.687 1.220 1.806 1.402 2.018 1.384 3.428 3.130 1.182 0.490 2.182 2.180 4.943 3.797 1.304 1.905 6.571 8.338 1.848 0.974 3.595 2.745 1.567 1.143 0.743 1912 chr8 144342347 144374683 + 0 NA exon (NM_138465, exon 4 of 4) exon (NM_138465, exon 4 of 4) 5355 NR_120683 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long noncoding RNA ncRNA 1.049 2.014 0.465 0.733 1.506 0.914 1.012 0.648 4.499 3.775 1.043 0.819 0.460 0.572 1.345 1.165 0.494 0.796 0.744 0.957 0.708 0.516 1.023 0.511 1.400 1.268 0.635 0.452 0.760 1.891 2.777 1.101 0.862 2.432 0.741 0.382 1.464 3.408 0.503 0.333 0.457 0.308 1307 chr21 43458858 43488383 + 0 NA Intergenic Intergenic -9448 NM_001199527 89766 Hs.242520 NM_173568 ENSG00000177398 UMODL1 - uromodulin like 1 protein-coding 0.108 0.102 0.094 0.212 0.356 0.015 0.117 0.213 4.132 0.747 1.066 0.292 0.139 0.264 0.133 0.454 0.023 0.516 0.057 0.009 0.215 0.092 0.045 0.059 0.140 0.146 0.110 0.323 0.708 0.086 0.137 0.035 0.314 0.815 0.514 0.226 0.776 0.092 0.334 0.041 0.309 0.131 1079 chr19 49540451 49547946 + 0 NA Intergenic AluSx1|SINE|Alu -2904 NM_033043 93659 Hs.172944 NM_033043 ENSG00000189052 CGB5 CGB|HCG|hCGB chorionic gonadotropin beta subunit 5 protein-coding 11.102 0.918 0.041 1.069 0.732 0.042 0.262 1.376 nan 0.247 0.173 2.652 0.407 1.003 0.462 3.528 0.419 2.151 0.081 0.009 0.038 0.286 0.086 1.474 0.371 0.195 0.444 1.091 0.350 0.391 0.053 0.178 1.068 0.140 0.245 0.147 0.247 0.967 0.749 0.269 0.162 1157 chr2 113378857 113408659 + 0 NA Intergenic Intergenic 7999 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 1.992 3.377 0.075 0.730 0.984 1.327 2.049 2.090 3.505 1.668 1.803 1.984 3.725 1.704 3.636 3.936 0.703 4.364 0.135 0.414 3.337 3.039 0.396 6.164 8.926 2.386 1.166 1.059 9.155 1.263 2.499 1.024 1.814 1.544 2.647 0.665 0.495 2.239 2.407 4.788 1.535 1.198 792 chr17 7587500 7593169 + 0 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) -424 NM_001143991 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 3.065 4.062 3.255 1.982 4.835 4.143 3.587 1.356 7.434 5.430 5.959 3.643 2.111 2.033 3.953 3.186 1.631 2.581 2.956 2.941 1.651 1.880 1.245 5.028 9.497 3.581 1.764 5.005 4.162 6.837 5.106 2.046 2.893 6.780 8.806 2.465 2.911 7.006 5.617 2.861 4.673 3.815 853 chr17 40530817 40546563 + 0 NA intron (NM_139276, intron 1 of 23) FLAM_A|SINE|Alu 1715 NM_213662 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 1.138 1.100 0.442 0.601 1.653 3.392 0.913 0.387 nan 0.766 1.515 0.279 0.831 1.708 0.753 1.062 0.695 0.475 0.350 0.255 1.617 1.292 0.822 0.600 2.031 0.738 0.370 0.511 1.025 1.779 0.763 1.167 1.158 1.630 0.588 0.864 1.458 1.793 0.767 0.401 0.311 0.149 830 chr17 36097650 36107025 + 0 NA intron (NM_001304286, intron 1 of 6) CpG 2732 NM_001304286 6928 Hs.191144 NM_000458 ENSG00000275410 HNF1B FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HNF1 homeobox B protein-coding 16.864 0.092 0.026 0.060 0.080 6.923 2.802 2.643 0.156 0.138 4.479 0.046 1.787 5.448 0.075 0.271 0.025 0.010 1.303 0.029 3.972 5.323 0.086 0.107 0.171 0.225 0.136 2.184 0.202 7.498 0.054 4.173 4.745 0.136 0.822 0.637 0.206 0.033 0.024 1.532 1.189 765 chr16 86956584 86966653 + 0 NA Intergenic Intergenic -129772 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LOC440390 - uncharacterized LOC440390 ncRNA 0.076 0.487 0.012 0.037 0.063 0.056 0.102 0.010 0.063 0.088 0.070 0.854 0.033 0.048 0.365 7.232 0.030 0.041 1.249 0.565 0.007 0.074 2.188 0.514 0.209 0.045 6.508 0.097 0.070 0.055 0.053 0.070 0.230 0.061 0.130 0.070 0.188 2.181 0.023 0.005 1015 chr19 36542511 36548204 + 0 NA promoter-TSS (NM_001083961) promoter-TSS (NM_001083961) 307 NM_001331104 199745 Hs.350209 NM_152658 ENSG00000161277 THAP8 - THAP domain containing 8 protein-coding 3.274 3.539 1.978 0.972 3.174 3.385 2.739 0.553 3.313 1.928 2.203 0.873 1.347 1.262 1.503 1.476 1.342 2.198 0.808 1.331 1.812 1.887 4.151 3.722 5.342 3.298 1.923 0.904 3.898 5.252 8.618 2.790 1.249 4.731 3.131 0.839 1.613 3.489 1.317 1.755 1.155 0.705 268 chr10 112151828 112194524 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -84449 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 0.829 1.977 0.051 0.920 1.278 0.902 2.341 1.549 4.376 2.558 0.832 0.538 0.819 2.106 1.787 4.018 0.467 2.796 0.457 0.039 2.366 1.523 0.490 2.947 2.773 2.651 1.258 0.581 0.945 3.585 1.618 1.878 3.618 2.447 3.111 1.849 1.171 0.484 0.718 0.569 0.502 0.482 1679 chr6 42415051 42422935 + 0 NA 5' UTR (NM_001297573, exon 2 of 18) 5' UTR (NM_001297573, exon 2 of 18) 796 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 1.743 2.143 0.833 0.964 2.905 1.573 2.670 1.252 2.680 1.286 0.564 1.371 1.258 0.871 2.489 4.633 0.796 2.385 0.963 2.352 3.544 5.051 1.099 1.887 1.300 1.266 0.889 0.795 8.697 2.539 4.121 1.827 1.403 2.384 5.948 0.436 1.114 5.962 1.919 1.718 1.271 0.697 196 chr1 200369525 200389239 + 0 NA promoter-TSS (NM_001281293) promoter-TSS (NM_001281293) -196 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 0.787 1.291 0.041 0.348 0.936 3.296 1.450 1.304 3.196 2.741 2.771 0.870 0.353 1.478 1.658 1.445 0.397 1.940 0.153 0.204 1.836 1.531 0.500 0.607 1.786 1.390 0.721 1.028 1.942 1.656 0.948 0.632 1.597 0.646 1.597 0.694 0.489 1.306 0.923 0.426 0.161 0.070 443 chr12 53608394 53619477 + 0 NA exon (NM_001243732, exon 1 of 7) exon (NM_001243732, exon 1 of 7) 262 NM_001042728 5916 Hs.1497 NM_000966 ENSG00000172819 RARG NR1B3|RARC retinoic acid receptor gamma protein-coding 1.453 4.020 1.121 1.632 4.017 2.508 2.333 1.329 5.664 3.032 2.019 2.586 1.476 1.445 2.079 4.709 1.721 1.459 0.664 2.517 2.216 2.394 1.866 2.107 2.937 1.478 0.823 1.499 5.366 4.099 4.415 2.897 4.824 2.655 4.429 1.621 2.183 3.961 3.055 3.188 0.677 0.336 947 chr18 45452839 45461447 + 0 NA promoter-TSS (NM_005901) promoter-TSS (NM_005901) -173 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 2.740 2.938 1.125 0.330 0.873 5.801 1.149 0.504 2.191 1.658 1.565 0.343 0.438 0.911 3.117 0.890 0.777 1.144 1.830 2.626 0.682 0.897 1.943 3.979 4.036 2.889 1.365 0.813 1.691 3.126 1.908 1.808 5.733 1.396 0.688 2.494 1.492 2.727 1.350 0.957 0.870 0.537 1763 chr7 63532082 63550298 + 0 NA Intergenic L1PREC2|LINE|L1 35369 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 0.016 0.047 0.010 0.058 0.028 0.084 0.016 0.054 0.089 0.048 0.020 0.074 0.024 0.020 0.011 0.015 0.004 0.008 0.004 0.006 0.091 0.007 0.017 0.038 0.237 0.027 0.060 0.009 0.034 0.051 0.025 0.020 0.027 0.013 0.044 0.008 8.877 7.831 855 chr17 40667138 40700858 + 0 NA Intergenic AluSx|SINE|Alu -3953 NM_000263 4669 Hs.50727 NM_000263 ENSG00000108784 NAGLU CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD N-acetyl-alpha-glucosaminidase protein-coding 1.401 2.603 0.265 1.644 2.880 3.744 2.104 1.415 nan 0.751 1.411 0.807 2.023 2.480 1.374 2.555 1.267 0.939 0.413 0.370 2.949 3.232 1.487 0.778 4.646 1.228 0.476 1.343 3.950 1.861 2.114 3.191 1.504 2.901 2.642 0.736 0.965 3.643 2.458 1.115 1.790 1.119 138 chr1 153618892 153634437 + 0 NA Intergenic LTR41|LTR|ERVL -4466 NM_012437 23557 Hs.32018 NM_012437 ENSG00000143553 SNAPIN BLOC1S7|BLOS7|BORCS3|SNAPAP SNAP associated protein protein-coding 0.486 0.570 0.215 0.317 0.743 0.508 0.610 0.461 8.961 4.877 0.887 0.339 0.349 0.938 0.711 0.633 0.162 0.325 1.268 0.428 0.715 0.539 0.374 0.669 0.785 0.454 0.271 0.260 0.452 0.827 0.856 0.943 2.379 0.703 0.507 0.346 0.813 1.723 0.639 0.256 0.319 0.170 1277 chr20 60795969 60802551 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -3937 NM_007232 11255 Hs.251399 NM_007232 ENSG00000101180 HRH3 GPCR97|HH3R histamine receptor H3 protein-coding 0.097 0.086 0.029 0.057 0.019 0.073 0.182 0.107 0.137 0.022 0.129 0.053 0.061 0.061 0.021 0.031 0.020 0.068 0.086 0.221 0.046 0.069 0.136 0.012 0.053 21.264 0.021 0.055 0.028 0.018 0.038 0.175 0.024 0.047 0.009 468 chr12 65990048 66009358 + 0 NA intron (NR_120434, intron 2 of 4) MIR|SINE|MIR 36449 NR_120432 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 1.963 1.076 0.623 0.490 0.643 2.462 1.268 3.109 3.163 1.692 1.794 1.526 2.355 1.683 1.209 2.480 0.040 5.266 0.036 0.771 0.373 0.169 0.019 0.433 2.145 1.044 0.484 0.740 4.005 0.118 1.461 0.051 0.681 0.386 2.706 0.242 0.626 0.819 0.489 1.405 0.867 0.748 1266 chr20 50594843 50639227 + 0 NA Intergenic AluY|SINE|Alu 104988 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 0.235 0.149 0.039 0.231 0.779 0.096 0.239 0.367 5.074 1.369 1.601 0.340 0.064 0.334 0.359 0.482 0.280 0.359 0.041 0.671 0.232 0.154 0.074 0.229 0.583 0.144 0.107 0.335 0.302 0.422 0.071 0.096 0.461 0.704 0.048 0.270 0.082 0.281 0.413 0.214 0.051 0.025 1344 chr22 38677871 38717490 + 0 NA intron (NM_001289912, intron 8 of 14) AluSx|SINE|Alu 15733 NM_152221 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 1.234 2.851 0.402 0.654 1.644 3.293 1.016 0.451 3.554 1.545 0.891 0.413 0.515 0.705 3.006 1.596 1.224 0.608 0.328 0.165 0.570 0.580 0.314 0.686 2.670 0.914 0.512 0.614 0.702 1.124 0.830 0.737 1.065 4.266 1.251 1.658 3.317 1.224 0.949 1.518 0.334 0.233 716 chr16 24985623 25011822 + 0 NA intron (NM_018054, intron 1 of 18) intron (NM_018054, intron 1 of 18) 27977 NM_018054 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 2.150 1.521 0.620 0.304 0.682 2.657 0.391 0.338 0.524 0.204 0.245 0.397 0.302 1.014 0.415 1.621 0.601 1.577 0.138 0.011 1.027 0.529 0.742 1.667 1.434 0.924 0.480 0.495 1.023 0.781 0.284 0.267 0.558 0.575 3.664 0.178 0.183 0.543 1.687 0.651 0.232 0.148 1804 chr7 101510717 101534164 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 61558 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 0.289 0.455 2.034 0.462 1.115 2.556 1.244 0.477 3.064 1.056 1.647 0.379 0.215 0.632 0.791 1.622 0.423 0.511 0.178 0.059 0.367 0.268 0.595 1.163 0.931 0.531 0.224 1.087 1.138 3.823 2.032 0.590 1.688 2.129 1.299 1.034 3.352 1.140 0.748 0.221 1.258 1.228 719 chr16 29814712 29841700 + 0 NA exon (NM_024516, exon 1 of 3) exon (NM_024516, exon 1 of 3) 678 NM_024516 79447 Hs.702841 NM_024516 ENSG00000280789 PAGR1 C16orf53|GAS|PA1 PAXIP1 associated glutamate rich protein 1 protein-coding 3.789 5.425 0.876 1.133 3.038 3.689 4.415 0.982 5.961 2.831 3.395 1.712 1.665 3.864 3.006 2.867 1.055 2.560 4.200 1.336 2.944 3.641 2.166 3.602 5.251 2.531 1.176 2.595 2.582 5.058 5.190 2.754 3.519 2.585 6.247 1.781 1.081 5.341 3.559 2.274 2.367 1.536 1178 chr2 201976739 202023951 + 0 NA intron (NM_001127183, intron 3 of 9) intron (NM_001127183, intron 3 of 9) 2657 NM_001202518 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD like apoptosis regulator protein-coding 2.991 1.818 1.109 1.654 3.502 12.594 4.594 2.601 3.437 2.195 3.471 1.366 1.659 3.569 1.622 4.354 0.737 1.990 0.269 0.774 4.774 5.491 1.417 2.417 6.093 3.347 1.372 3.480 1.723 2.492 1.939 0.932 0.920 3.184 5.858 0.731 0.703 1.805 1.595 1.856 2.681 2.359 890 chr17 59486224 59492077 + 0 NA promoter-TSS (NM_203425) promoter-TSS (NM_203425) 38 NM_203425 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 protein-coding 0.652 0.618 0.952 0.840 3.428 5.073 4.215 1.746 13.383 8.213 1.678 2.951 1.552 0.966 1.040 1.855 1.224 2.008 0.310 0.678 1.666 1.663 2.468 3.997 0.583 2.772 1.330 0.280 0.476 7.336 8.904 3.786 3.283 3.824 1.362 2.406 4.139 6.146 3.690 0.416 0.748 0.406 43 chr1 33218528 33236036 + 0 NA intron (NM_020888, intron 1 of 6) MIRc|SINE|MIR -3953 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 5.674 1.543 3.344 1.370 3.337 3.034 2.369 1.390 8.965 4.869 3.454 2.232 0.128 2.121 4.283 2.851 2.915 1.356 0.102 0.055 1.730 1.595 0.337 0.204 2.389 0.522 0.324 1.955 0.273 2.055 0.517 1.268 2.367 3.333 0.824 1.725 2.931 0.641 1.808 1.077 0.099 0.067 1780 chr7 74488290 74493843 + 0 NA Intergenic AluSc|SINE|Alu -1349 NM_030798 81554 Hs.529623 NM_030798 ENSG00000274523 RCC1L WBSCR16 RCC1 like protein-coding 1.400 2.549 7.089 1.198 2.807 1.575 3.814 1.685 4.205 2.441 3.521 1.111 0.898 1.416 1.714 2.938 0.619 2.611 0.559 0.997 6.968 8.305 1.989 2.732 2.858 1.348 0.815 2.452 1.929 2.991 4.766 1.494 1.764 5.095 2.653 1.536 1.713 2.986 2.257 1.288 1.357 0.753 151 chr1 154939142 154951256 + 0 NA intron (NM_001130041, intron 1 of 12) intron (NM_001130041, intron 1 of 12) 1760 NM_001202859 6464 Hs.433795 NM_003029 ENSG00000160691 SHC1 SHC|SHCA SHC adaptor protein 1 protein-coding 3.454 6.613 1.950 2.723 6.430 11.967 4.473 3.214 8.779 5.746 4.206 3.982 5.052 4.889 4.474 5.095 2.421 5.246 2.837 2.898 5.856 7.940 3.328 9.992 10.417 11.430 3.996 3.387 7.201 6.943 5.809 10.942 8.553 7.109 6.811 3.100 2.747 15.179 7.233 4.452 6.916 5.511 794 chr17 7786451 7793647 + 0 NA intron (NM_001005271, intron 1 of 39) intron (NM_001005271, intron 1 of 39) -1343 NM_001330111 84316 Hs.565094 NM_032356 ENSG00000183011 NAA38 LSMD1|PFAAP2 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding 3.595 4.636 5.704 1.944 5.734 4.036 3.977 1.258 11.951 9.151 11.986 3.424 1.392 1.607 4.199 2.904 5.514 3.421 4.950 3.060 1.567 1.627 2.054 10.872 11.458 3.835 1.981 6.295 5.197 10.304 7.275 2.899 4.631 6.477 7.398 4.469 7.410 8.433 5.034 4.556 4.109 2.986 1773 chr7 73864632 73904550 + 0 NA intron (NM_001199207, intron 1 of 26) AluJo|SINE|Alu 16471 NM_016328 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 1.970 2.157 0.938 0.703 1.455 0.493 3.593 0.571 6.635 3.928 2.988 0.728 0.248 1.069 1.467 2.315 1.166 0.951 0.171 0.152 0.989 1.026 2.534 3.883 0.282 0.571 0.336 0.978 0.283 1.738 1.093 0.922 2.997 3.020 1.064 2.153 1.341 0.431 1.322 0.491 2.328 1.709 1117 chr2 28597147 28636649 + 0 NA intron (NM_005253, intron 1 of 3) intron (NM_005253, intron 1 of 3) 641 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 1.547 3.785 0.656 1.183 2.570 2.274 3.453 1.239 5.380 2.316 1.488 1.314 1.623 1.568 2.310 2.266 0.955 2.327 0.328 0.575 1.123 1.415 0.976 1.192 4.131 1.350 0.615 0.922 3.467 2.769 1.781 2.834 3.349 3.262 2.245 2.217 1.303 2.737 1.636 3.025 4.050 3.844 1249 chr20 43342254 43377341 + 0 NA intron (NR_132377, intron 3 of 4) MIR|SINE|MIR -14691 NM_022358 60598 Hs.528664 NM_022358 ENSG00000124249 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium two pore domain channel subfamily K member 15 protein-coding 1.724 0.929 0.074 0.273 0.648 3.736 1.250 0.613 1.242 0.393 0.392 0.267 0.491 0.545 0.532 0.489 2.550 0.905 0.054 0.110 1.112 0.700 3.001 2.768 6.069 0.530 0.261 0.493 0.208 2.083 0.453 0.874 1.527 0.418 2.509 0.346 3.147 9.747 1.576 0.434 0.197 0.095 1916 chr8 144813573 144824841 + 0 NA intron (NR_033849, intron 2 of 3) intron (NR_033849, intron 2 of 3) 2897 NR_033849 100128338 Hs.493171 NR_033849 ENSG00000203499 FAM83H-AS1 onco-lncRNA-3 FAM83H antisense RNA 1 (head to head) ncRNA 5.689 1.617 4.295 1.797 6.248 3.003 7.562 2.725 18.498 10.374 5.428 4.215 0.185 2.948 10.083 4.163 5.751 0.347 3.912 0.037 0.794 0.932 0.937 0.926 0.539 0.792 0.517 2.148 0.142 2.992 1.335 1.338 5.862 6.869 0.886 4.096 7.573 3.917 0.453 0.048 0.051 0.005 669 chr15 90940842 90967140 + 0 NA intron (NM_003870, intron 2 of 37) L1PA5|LINE|L1 22518 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 1.081 0.996 2.090 0.905 1.842 2.600 1.313 1.190 7.107 4.396 1.869 1.665 0.623 0.976 1.588 1.782 1.133 2.211 0.334 0.052 1.288 0.761 1.516 1.205 0.736 0.411 0.244 0.785 1.748 0.784 0.953 0.757 1.736 1.840 3.940 1.159 1.287 0.430 1.220 1.325 0.344 0.287 1432 chr3 176908410 176921012 + 0 NA promoter-TSS (NM_001321193) promoter-TSS (NM_001321193) 403 NM_024665 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 5.653 3.146 3.764 0.647 2.288 4.942 5.496 1.577 5.468 2.832 8.650 1.104 0.990 1.820 4.920 3.174 1.445 2.809 2.236 3.442 5.734 6.719 1.038 2.968 7.043 2.949 1.275 1.742 3.468 2.561 3.075 1.644 4.617 2.533 4.607 1.273 2.311 3.599 2.039 2.154 1.650 1.575 807 chr17 26661548 26666912 + 0 NA intron (NM_021137, intron 1 of 6) L2a|LINE|L2 1682 NM_021137 7126 Hs.76090 NM_021137 ENSG00000109079 TNFAIP1 B12|B61|BTBD34|EDP1|hBACURD2 TNF alpha induced protein 1 protein-coding 2.119 3.487 0.275 0.992 2.432 3.232 2.283 1.080 3.067 2.674 2.085 0.766 0.990 1.461 1.734 1.489 0.678 0.660 0.471 0.386 1.414 1.402 1.936 1.189 8.112 6.713 2.934 0.518 1.756 3.684 1.414 1.459 1.587 5.851 0.777 0.797 1.331 3.829 1.431 1.703 2.469 1.387 683 chr16 1724272 1743986 + 0 NA intron (NM_144570, intron 1 of 4) MER2|DNA|TcMar-Tigger 5851 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 HN1L C16orf34|L11 hematological and neurological expressed 1 like protein-coding 3.171 2.869 0.922 0.974 2.617 3.600 1.699 0.856 2.251 1.298 1.309 1.195 0.804 1.397 1.768 3.502 0.879 0.860 0.259 0.112 1.382 1.212 0.744 0.657 2.300 2.123 0.882 2.010 0.371 1.175 1.202 2.211 2.010 5.046 1.598 0.564 1.498 0.796 1.758 1.569 1.597 1.111 1169 chr2 169890537 169905727 + 0 NA Intergenic L1MB5|LINE|L1 -10299 NM_003742 8647 Hs.658439 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 0.414 0.100 0.008 0.647 0.632 0.062 0.683 0.300 1.833 0.518 0.660 0.372 0.111 2.487 0.958 0.532 0.188 0.232 0.045 0.009 0.351 0.080 0.005 0.088 0.115 0.036 0.052 0.344 0.105 0.204 0.028 0.140 0.969 0.136 0.178 0.532 0.219 0.050 0.290 0.399 0.011 0.003 802 chr17 16115782 16122305 + 0 NA promoter-TSS (NM_006311) promoter-TSS (NM_006311) -169 NM_006311 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 2.069 3.531 1.370 1.146 3.424 3.610 2.652 0.663 5.754 4.214 3.862 1.947 1.100 2.157 2.834 1.905 1.405 2.231 1.286 1.489 1.125 1.131 1.380 3.805 6.165 4.298 2.239 2.283 3.149 5.291 5.393 1.603 2.523 3.908 7.532 2.180 1.908 6.528 5.402 1.818 2.843 1.494 559 chr14 35005360 35031805 + 0 NA Intergenic AluSg|SINE|Alu -9639 NM_001318916 55837 Hs.433269 NM_018453 ENSG00000129518 EAPP BM036|C14orf11 E2F associated phosphoprotein protein-coding 1.269 1.384 3.306 0.481 1.667 1.004 1.368 0.677 19.353 14.885 2.006 0.889 0.668 0.894 0.727 1.344 0.912 1.344 1.130 1.939 1.112 1.795 0.493 1.879 1.616 2.209 1.078 1.430 2.022 2.127 1.645 0.827 1.149 2.798 3.152 1.321 0.752 1.909 1.433 1.193 0.640 0.452 1996 chrX 13388979 13422521 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR 52390 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 0.536 1.016 0.205 0.885 0.931 0.833 0.767 0.685 0.345 0.134 0.382 1.041 0.476 0.699 0.695 1.266 0.222 3.822 0.021 0.025 1.824 1.227 0.235 0.644 1.183 0.401 0.249 0.623 1.653 0.441 0.390 0.153 0.425 0.621 0.761 0.132 0.318 0.264 1.148 0.647 0.685 0.714 1279 chr20 62256293 62261255 + 0 NA promoter-TSS (NM_012384) promoter-TSS (NM_012384) 186 NR_132417 100505771 Hs.448392 NR_132417 ENSG00000232442 LOC100505771 - uncharacterized LOC100505771 ncRNA 8.344 6.814 1.713 0.802 4.228 9.529 6.584 1.592 11.946 6.475 7.187 1.703 2.756 2.317 4.739 3.113 2.916 1.817 3.042 3.956 2.453 4.141 4.045 4.722 10.615 9.058 3.963 2.658 7.199 5.619 6.261 5.487 3.880 4.851 11.659 2.959 4.323 16.878 3.476 4.079 3.598 2.660 1115 chr2 27575767 27581079 + 0 NA intron (NM_001521, intron 1 of 19) intron (NM_001521, intron 1 of 19) 936 NM_001318909 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 3.046 3.142 2.645 2.029 5.631 3.349 5.813 1.644 10.412 7.504 4.885 2.363 3.048 3.667 4.389 4.063 1.316 4.046 1.441 2.564 1.580 1.953 2.175 4.013 7.443 3.514 1.811 2.910 3.050 4.521 4.658 2.786 3.038 8.186 7.352 2.687 2.720 5.089 3.481 2.344 2.830 2.158 1872 chr8 81809793 81814018 + 0 NA Intergenic L1MB5|LINE|L1 -24889 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.561 3.025 6.574 0.268 0.643 1.086 1.272 0.473 0.556 0.155 0.415 1.422 0.028 0.541 5.583 1.746 3.350 0.699 0.179 0.163 4.447 3.953 0.052 2.331 0.087 0.613 0.389 1.344 0.639 1.830 0.100 0.489 4.442 0.405 0.130 1.333 1.365 0.027 0.259 0.323 0.027 0.049 1152 chr2 101725246 101747370 + 0 NA intron (NR_138475, intron 1 of 18) intron (NR_138475, intron 1 of 18) 31601 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 0.540 0.302 0.121 0.437 1.129 6.339 1.242 0.678 5.481 1.961 1.321 1.502 1.232 0.547 2.042 2.509 0.975 2.124 1.151 0.043 1.669 1.001 0.391 2.865 4.631 0.262 0.134 1.307 0.701 3.651 0.365 2.154 1.915 1.723 2.358 0.607 2.294 2.163 1.527 2.029 0.500 0.444 1088 chr19 56109845 56118492 + 0 NA exon (NM_153219, exon 2 of 2) exon (NM_153219, exon 2 of 2) 2462 NM_153219 147807 Hs.440291 NM_153219 ENSG00000171443 ZNF524 - zinc finger protein 524 protein-coding 5.509 5.205 2.433 1.045 3.478 3.784 3.886 1.023 7.293 3.780 5.686 1.524 2.006 4.192 3.871 2.176 2.137 2.809 2.710 3.083 1.349 1.764 4.679 3.244 7.346 3.604 1.443 2.409 2.350 6.590 3.411 4.001 2.221 4.100 2.929 2.346 3.826 5.431 3.871 2.336 2.711 1.780 549 chr14 21148646 21153802 + 0 NA Intergenic CpG -1112 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 4.912 2.257 1.902 1.320 4.254 8.719 4.019 1.489 9.349 7.443 7.758 2.041 0.642 2.247 1.769 2.609 0.758 2.802 3.827 7.281 3.066 3.133 1.329 5.272 5.198 2.566 1.098 2.469 4.089 9.110 5.239 4.875 4.040 4.260 5.997 2.001 1.577 8.375 4.963 3.403 1.977 1.410 1358 chr3 9388397 9397329 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -11854 NM_015453 25917 Hs.443081 NM_015453 ENSG00000134077 THUMPD3 - THUMP domain containing 3 protein-coding 0.859 0.174 0.388 2.377 4.638 0.092 2.611 2.478 5.866 1.781 2.506 1.537 0.713 2.209 0.496 3.413 0.298 0.187 1.828 0.047 0.270 0.186 0.057 0.186 0.156 0.152 0.105 3.788 0.592 0.441 0.304 0.902 1.759 2.122 0.496 0.644 0.428 0.052 0.828 0.377 0.045 0.023 1502 chr4 178223936 178245650 + 0 NA intron (NM_018248, intron 1 of 9) intron (NM_018248, intron 1 of 9) 3802 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 0.453 0.729 0.103 0.148 0.342 3.130 0.487 0.119 0.414 0.126 0.413 0.299 0.272 0.307 0.250 0.575 0.228 0.289 0.046 0.096 2.003 1.420 0.109 4.380 0.182 0.309 0.208 0.081 0.547 1.247 0.302 0.669 1.371 0.239 0.548 0.373 0.130 0.167 0.441 0.238 0.081 0.037 1659 chr6 32152252 32166202 + 0 NA exon (NM_022107, exon 8 of 8).4 exon (NM_022107, exon 8 of 8).4 -1264 NM_002586 5089 Hs.509545 NM_002586 ENSG00000204304 PBX2 G17|HOX12|PBX2MHC PBX homeobox 2 protein-coding 2.670 3.804 1.092 0.640 2.016 4.797 1.094 0.795 4.878 2.507 2.561 1.102 1.159 1.007 1.753 3.096 0.714 1.593 1.240 3.168 1.991 2.131 1.205 2.036 3.230 3.729 1.692 0.950 3.675 1.962 5.693 1.861 1.385 3.092 2.915 0.647 0.977 4.682 1.865 2.719 2.074 1.413 439 chr12 51155806 51184480 + 0 NA intron (NM_005171, intron 1 of 6) AluJb|SINE|Alu 12354 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 1.031 0.897 2.377 0.450 2.070 2.460 1.653 1.274 2.493 1.296 1.219 0.689 0.828 0.809 0.916 2.325 1.112 0.852 0.412 0.870 2.326 2.038 0.882 1.577 1.798 1.414 0.624 0.986 1.581 2.331 1.300 0.854 3.361 3.368 2.777 1.171 1.240 1.601 3.643 0.852 0.534 0.396 1579 chr5 134442117 134479322 + 0 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) -84982 NR_105049 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1|Epist C5orf66 antisense RNA 1 ncRNA 0.167 0.321 0.019 0.498 0.636 0.021 0.595 0.408 6.463 2.002 0.184 0.634 0.142 1.611 1.045 2.033 0.056 0.347 0.496 0.026 1.866 1.242 0.063 0.785 0.082 0.174 0.069 0.335 0.497 0.762 0.068 0.161 2.847 0.195 0.174 1.157 0.238 0.084 0.358 0.451 0.093 0.123 415 chr12 14507387 14511748 + 0 NA Intergenic AluSp|SINE|Alu -8999 NM_001286515 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 0.581 0.097 0.028 0.389 0.683 0.078 1.058 2.152 3.624 0.590 1.047 0.470 0.827 0.110 1.105 0.022 0.042 0.176 0.033 2.031 1.364 0.051 0.092 0.085 0.014 7.919 0.504 0.653 0.886 0.055 0.090 1.431 0.126 0.039 0.130 0.244 0.199 0.018 0.012 510 chr12 125149350 125189106 + 0 NA Intergenic Intergenic -117218 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.386 0.347 1.251 0.425 0.631 0.170 0.226 1.071 4.452 1.400 1.035 0.807 0.169 0.468 1.429 1.913 0.894 1.330 0.140 0.042 1.391 1.054 0.147 2.103 0.640 0.193 0.108 0.741 1.364 1.663 0.620 0.063 0.567 1.540 0.298 0.927 0.774 1.655 0.393 0.599 0.377 0.295 1373 chr3 46597402 46601122 + 0 NA intron (NR_073385, intron 2 of 2) intron (NR_073385, intron 2 of 2) 374 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 1.005 0.114 0.709 1.986 0.827 2.166 5.258 0.468 0.130 0.132 0.801 0.291 0.869 0.674 1.276 0.231 0.520 0.136 0.112 0.292 0.176 0.219 0.170 2.176 13.495 4.682 2.502 1.762 0.175 0.480 0.750 0.252 1.836 0.999 0.241 0.220 0.673 3.150 0.786 1.796 1.421 1199 chr2 235269060 235282703 + 0 NA Intergenic Intergenic 129812 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 0.190 0.118 1.771 1.363 1.765 0.435 0.120 0.290 3.389 0.665 2.622 1.983 0.885 0.264 4.281 3.335 1.293 0.334 0.215 0.162 1.924 1.225 0.103 1.305 0.108 0.124 0.035 0.930 0.287 4.429 0.623 0.922 1.326 1.505 1.151 0.871 1.979 0.498 0.503 0.155 1.786 1.836 1682 chr6 43736593 43743567 + 0 NA intron (NM_001287044, intron 1 of 6) intron (NM_001287044, intron 1 of 6) 358 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 7.039 3.572 0.969 0.952 5.558 4.181 3.697 1.382 9.344 6.741 6.766 2.685 2.828 2.201 5.290 4.929 2.059 3.250 1.723 6.775 3.086 3.438 1.357 4.044 3.782 3.096 1.366 1.861 2.539 3.505 5.767 7.593 3.424 5.247 5.254 2.419 2.244 8.450 1.711 2.106 2.040 1.068 437 chr12 50325524 50362329 + 0 NA promoter-TSS (NM_000486) promoter-TSS (NM_000486) -598 NM_000486 359 Hs.130730 NM_000486 ENSG00000167580 AQP2 AQP-CD|WCH-CD aquaporin 2 protein-coding 0.570 0.156 0.058 0.099 0.256 0.058 0.187 0.335 6.723 2.021 1.261 0.179 0.144 0.341 0.348 0.453 0.036 0.331 0.057 0.041 0.346 0.121 0.159 0.539 0.165 0.085 0.042 0.329 0.302 0.639 0.306 1.196 0.901 1.325 0.728 0.692 0.312 0.397 0.302 0.072 0.039 0.021 413 chr12 12985935 12999625 + 0 NA Intergenic Intergenic 26500 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 4.122 0.328 3.569 1.230 2.548 2.572 4.795 3.474 6.647 3.666 5.103 1.006 0.389 2.732 3.515 4.420 1.427 3.701 0.059 0.030 3.835 3.729 0.718 0.336 2.776 0.977 0.483 3.109 1.974 1.852 1.775 0.201 1.580 5.961 1.649 1.045 2.001 2.157 1.596 0.658 0.334 0.223 421 chr12 19998565 20021221 + 0 NA Intergenic Intergenic -157726 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LOC100506393 - uncharacterized LOC100506393 ncRNA 0.139 0.267 0.470 0.223 0.677 0.142 1.344 0.459 1.190 0.307 3.864 0.431 0.115 0.192 0.085 0.496 0.017 1.087 0.056 0.049 0.415 0.170 0.023 1.041 0.102 0.048 0.042 0.054 0.443 0.219 0.118 0.160 0.216 0.396 0.008 0.183 0.051 0.257 0.170 0.111 0.013 0.018 322 chr11 63320755 63343160 + 0 NA Intergenic Intergenic -1102 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 HRASLS2 PLA1/2-2 HRAS like suppressor 2 protein-coding 1.010 0.686 0.924 0.279 0.322 0.085 0.422 0.784 1.023 0.294 1.087 0.654 0.161 0.689 1.503 1.183 0.269 1.211 0.059 0.019 2.263 1.694 0.149 1.138 0.321 0.129 0.118 0.601 1.030 2.036 0.096 0.014 1.201 0.762 0.256 0.802 2.126 0.083 0.265 0.369 0.019 0.009 1290 chr21 30670485 30689447 + 0 NA intron (NR_027655, intron 1 of 7) Tigger7|DNA|TcMar-Tigger 2441 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 0.637 1.231 2.163 0.188 0.651 0.471 0.432 0.307 1.219 0.743 0.733 0.183 0.260 0.311 0.784 0.551 0.216 1.002 0.147 0.745 0.665 0.593 0.447 0.956 0.568 0.785 0.368 0.330 1.673 0.857 1.200 0.387 0.737 0.733 0.620 0.582 0.565 0.622 0.275 0.174 0.216 0.170 1032 chr19 39916548 39940024 + 0 NA Intergenic Intergenic -1626 NM_001321111 6217 Hs.397609 NM_001020 ENSG00000105193 RPS16 S16 ribosomal protein S16 protein-coding 2.246 2.313 0.193 1.162 3.100 1.553 2.555 0.988 3.550 2.084 1.978 0.942 1.204 1.376 2.267 1.711 0.704 1.854 0.905 0.549 1.485 1.320 2.841 1.689 2.087 1.439 0.750 0.948 0.859 5.704 4.303 1.576 1.851 5.189 1.683 1.309 1.448 3.114 0.647 0.806 0.586 0.413 1475 chr4 40311135 40342879 + 0 NA intron (NR_121640, intron 1 of 2) AluSz|SINE|Alu 8505 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 0.165 0.939 0.049 0.714 0.995 0.121 0.461 0.263 5.820 2.201 0.733 1.249 0.296 0.313 0.755 1.146 0.461 1.277 0.304 0.098 1.288 0.912 0.093 3.504 1.225 0.124 0.093 0.376 0.552 0.841 0.393 0.670 0.810 1.315 0.123 0.724 0.890 1.177 0.490 0.191 0.315 0.365 1276 chr20 58398726 58425539 + 0 NA intron (NM_001199505, intron 9 of 12) intron (NM_001199505, intron 9 of 12) 96586 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 2.180 0.150 0.019 0.106 0.449 0.031 0.846 1.285 6.078 7.731 2.776 0.240 0.035 1.237 0.661 0.380 0.021 0.028 0.886 0.005 0.044 0.027 0.035 0.044 0.117 0.059 0.041 0.627 0.142 0.076 0.061 0.033 0.097 0.332 0.028 0.393 0.098 0.089 0.044 0.034 0.015 0.007 1105 chr2 10146194 10157265 + 0 NA Intergenic Intergenic 31799 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 0.045 0.126 0.270 0.207 1.392 0.039 0.088 0.028 1.462 0.305 0.123 0.079 0.011 0.099 0.122 0.204 0.052 0.133 0.009 0.078 0.106 0.078 0.075 0.071 0.169 0.033 0.035 0.107 0.160 0.178 0.121 0.085 0.121 5.024 0.058 0.233 0.389 0.197 0.071 0.021 0.021 0.018 1806 chr7 102143972 102158210 + 0 NA intron (NM_001277335, intron 2 of 19) AluSx1|SINE|Alu 7133 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 0.356 2.527 0.099 1.151 1.635 0.158 0.661 1.118 5.734 2.003 0.931 0.576 2.043 0.322 0.499 2.868 0.202 1.765 0.361 0.482 0.957 0.713 1.247 1.492 9.248 0.562 0.438 0.636 0.277 1.930 3.037 0.530 1.121 2.069 0.768 2.619 0.773 2.561 0.816 0.862 0.133 0.052 746 chr16 67269849 67283961 + 0 NA intron (NM_001318202, intron 1 of 23) (TA)n|Simple_repeat|Simple_repeat 4520 NM_001318202 29109 Hs.95231 NM_013241 ENSG00000135723 FHOD1 FHOS formin homology 2 domain containing 1 protein-coding 1.423 2.920 0.502 1.866 4.576 5.658 3.640 1.227 5.885 3.782 4.908 2.216 2.127 2.259 3.252 3.617 2.662 3.765 1.126 1.484 4.192 4.666 1.958 3.895 5.258 3.142 1.732 2.093 2.393 3.150 2.004 1.779 5.164 4.935 4.115 1.180 2.185 2.737 2.638 1.397 0.400 0.267 1143 chr2 86857146 86862440 + 0 NA intron (NM_001198954, intron 2 of 7) AluSz|SINE|Alu -8793 NM_001198952 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 0.123 0.203 0.029 0.287 0.069 0.089 0.040 0.382 0.061 0.188 0.055 0.022 0.164 0.085 0.275 0.095 0.052 0.091 0.014 0.071 0.097 0.173 0.011 0.044 0.073 0.121 4.600 0.113 5.310 4.337 0.081 0.098 0.215 7.540 0.163 0.139 0.024 0.020 358 chr11 72481714 72506235 + 0 NA promoter-TSS (NR_039841) promoter-TSS (NR_039841) -601 NR_039841 100616410 NR_039841 ENSG00000265064 MIR4692 - microRNA 4692 ncRNA 0.417 0.683 0.609 0.207 0.654 0.311 0.176 0.344 nan 2.311 1.610 0.554 0.207 0.253 2.381 1.215 0.129 0.403 2.890 0.141 0.425 0.316 0.357 0.283 0.947 0.377 0.232 0.468 0.554 1.106 0.784 0.734 4.942 1.197 0.665 1.174 4.122 1.346 0.372 0.425 0.192 0.113 69 chr1 56177363 56195319 + 0 NA Intergenic Intergenic 495027 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.056 1.461 0.231 1.182 2.112 0.281 1.839 1.628 nan 0.344 2.725 1.895 0.927 4.804 1.062 4.831 0.166 0.538 0.028 0.031 3.412 2.897 0.037 0.035 0.217 0.236 0.148 2.651 3.350 0.138 0.062 0.259 1.066 1.986 1.055 0.448 0.811 0.055 1.159 2.267 0.032 0.014 1397 chr3 124575444 124608498 + 0 NA intron (NM_002213, intron 2 of 14) intron (NM_002213, intron 2 of 14) 14181 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 1.472 0.579 0.080 0.402 0.756 5.453 1.835 0.445 3.389 2.313 0.740 0.641 0.590 0.621 0.804 2.508 0.387 2.427 0.282 0.122 1.261 0.912 0.313 0.616 1.172 0.663 0.392 0.405 2.058 3.743 1.742 1.315 1.444 0.720 3.363 0.406 1.477 1.372 0.561 0.578 2.896 3.066 967 chr19 1093639 1114303 + 0 NA promoter-TSS (NM_002085) promoter-TSS (NM_002085) 46 NM_002085 2879 Hs.433951 NM_002085 ENSG00000167468 GPX4 GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx glutathione peroxidase 4 protein-coding 1.136 2.316 1.162 0.982 2.725 3.097 2.227 1.196 5.012 2.493 2.007 0.777 0.697 2.517 2.458 2.398 0.726 1.153 0.634 1.066 1.977 2.390 2.019 2.280 5.602 2.063 0.999 1.045 4.572 3.086 3.924 0.657 1.977 3.062 3.607 1.084 0.328 7.733 3.090 1.365 1.376 0.916 1386 chr3 57580500 57585406 + 0 NA promoter-TSS (NR_132369) promoter-TSS (NR_132369) 262 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 4.064 4.885 1.720 1.351 3.410 3.380 7.496 3.664 4.881 4.410 3.308 1.785 1.344 2.830 5.289 2.808 1.451 3.738 1.361 1.288 2.054 2.264 2.069 3.510 4.450 5.740 2.795 1.893 5.807 2.207 3.955 2.657 1.871 6.668 3.850 1.551 1.283 3.423 4.599 2.713 3.675 3.264 956 chr18 53155844 53181658 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) 9249 NM_001243231 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 0.212 0.428 0.002 0.022 0.047 0.017 0.042 0.012 0.030 0.031 0.044 0.091 0.119 0.035 0.166 0.052 0.008 2.337 0.059 0.021 0.080 0.023 0.052 0.878 0.295 0.037 0.057 0.033 2.372 0.035 0.360 0.009 0.022 0.036 0.018 0.019 0.010 0.061 0.065 0.346 0.011 0.016 960 chr18 76526194 76534160 + 0 NA Intergenic Intergenic -210098 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 0.009 0.069 0.008 0.040 0.048 0.020 0.116 0.029 0.027 0.019 0.028 0.036 0.070 0.034 8.886 0.009 0.303 0.020 0.196 0.030 0.038 0.075 0.041 0.054 0.010 0.042 0.018 0.032 0.029 0.010 0.029 38 chr1 27880634 27905389 + 0 NA intron (NM_001029882, intron 1 of 6) intron (NM_001029882, intron 1 of 6) 36994 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 1.904 2.543 1.033 0.725 2.890 1.003 1.777 0.691 8.879 2.183 2.416 1.625 0.489 1.054 0.479 1.902 1.127 0.314 0.637 0.162 1.543 1.324 1.113 0.375 1.423 0.599 0.277 1.331 0.423 1.378 1.196 0.628 0.722 3.138 1.921 0.414 0.956 1.359 0.969 0.316 0.133 0.084 76 chr1 67407173 67420734 + 0 NA TTS (NM_001278215) TTS (NM_001278215) 18027 NM_001077704 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 0.476 0.433 0.275 0.614 1.368 0.180 3.254 1.059 0.482 0.279 0.712 0.335 0.340 1.096 0.263 1.152 0.261 0.296 0.296 0.041 0.519 0.283 0.331 0.214 0.154 0.394 0.288 2.537 0.593 0.177 0.410 1.092 0.339 1.300 5.539 0.072 0.098 0.081 1.082 0.231 0.293 0.277 507 chr12 125021588 125037167 + 0 NA intron (NM_001077261, intron 1 of 47) MIRb|SINE|MIR 22633 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.249 0.305 0.357 0.392 1.035 0.275 0.082 0.311 1.868 0.476 0.260 0.263 0.038 0.274 0.398 2.039 0.432 0.677 0.064 0.134 0.988 0.732 0.451 0.364 0.201 0.193 0.130 0.163 0.212 0.758 3.173 0.020 0.201 1.881 0.209 0.203 0.658 1.259 0.117 0.108 0.052 0.020 1322 chr22 20848512 20852500 + 0 NA promoter-TSS (NR_033825) promoter-TSS (NR_033825) -336 NR_033825 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 5.310 9.358 10.300 0.954 5.150 4.202 6.105 1.796 7.836 4.663 5.174 1.028 0.744 1.450 1.995 0.821 1.702 1.501 1.071 1.987 1.538 1.902 5.199 3.010 5.402 4.064 2.014 1.252 2.919 3.143 5.042 3.660 2.083 6.584 2.765 1.287 2.738 5.164 1.974 1.219 1.473 0.853 1896 chr8 126007640 126014666 + 0 NA promoter-TSS (NR_134457) promoter-TSS (NR_134457) 433 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 4.941 1.146 0.353 0.539 2.505 0.798 1.717 2.049 2.629 0.653 1.508 0.773 0.320 1.176 1.817 1.897 1.346 2.209 0.986 1.431 1.253 0.770 0.818 0.796 3.544 2.776 1.358 0.144 2.185 1.251 3.477 0.904 2.529 1.766 6.569 0.226 0.783 1.288 0.530 0.475 0.577 0.254 865 chr17 42294459 42300421 + 0 NA promoter-TSS (NM_001076684) promoter-TSS (NM_001076684) -399 NM_001076684 7343 Hs.89781 NM_014233 ENSG00000108312 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 9.730 9.584 2.618 1.462 6.417 5.722 5.655 1.187 nan 9.910 6.728 1.301 2.396 3.418 5.139 4.420 3.128 3.672 2.417 6.351 3.876 5.975 5.534 9.064 12.587 5.836 2.939 3.157 7.996 12.848 6.520 5.363 6.290 7.300 4.998 2.798 5.785 13.913 4.997 4.465 3.538 2.478 287 chr11 701564 711856 + 0 NA intron (NM_022772, intron 1 of 20) intron (NM_022772, intron 1 of 20) 590 NM_022772 64787 Hs.55016 NM_022772 ENSG00000177106 EPS8L2 EPS8R2 EPS8 like 2 protein-coding 6.230 2.572 3.766 1.489 5.089 0.398 4.017 2.133 10.974 7.133 5.517 1.749 1.238 2.712 3.268 5.505 1.089 0.137 2.057 0.148 1.411 1.772 2.398 0.916 10.122 2.147 1.037 2.750 1.199 5.704 1.688 0.821 1.843 4.533 4.742 2.285 3.752 2.449 0.819 0.954 2.373 1.378 1597 chr5 156472505 156492475 + 0 NA exon (NM_012206, exon 2 of 8) exon (NM_012206, exon 2 of 8) 2762 NM_012206 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 0.951 0.115 0.006 0.058 1.227 0.142 0.661 0.118 0.054 0.073 0.022 0.308 1.244 0.092 0.170 0.005 0.056 0.020 0.007 2.737 2.253 0.019 0.068 0.143 0.336 0.258 0.771 0.160 4.379 0.054 3.306 2.063 0.071 0.051 0.086 0.029 0.039 0.106 0.053 0.756 0.641 1799 chr7 100462377 100476173 + 0 NA exon (NM_003302, exon 7 of 9) exon (NM_003302, exon 7 of 9) -3426 NM_015908 51593 Hs.111801 NM_015908 ENSG00000087087 SRRT ARS2|ASR2|serrate serrate, RNA effector molecule protein-coding 2.501 1.350 0.924 1.181 2.680 1.359 4.629 0.770 5.331 2.826 8.140 0.997 1.430 2.415 2.137 3.420 1.057 2.509 1.281 0.773 1.333 1.775 0.818 4.141 4.828 3.433 1.577 1.683 1.421 2.715 4.335 1.851 2.197 3.626 2.380 2.233 0.863 2.291 4.250 3.113 3.206 2.271 1503 chr4 184423739 184431279 + 0 NA intron (NM_001291959, intron 1 of 1) CpG 274 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 3.215 3.515 0.964 0.703 3.294 1.873 3.745 1.153 4.075 3.386 3.024 1.596 1.048 1.408 1.940 2.165 1.257 0.908 0.520 1.908 1.489 1.622 1.216 2.860 1.952 5.374 2.871 1.376 3.614 2.667 2.660 1.799 2.030 4.942 2.916 1.322 1.632 2.147 1.601 1.693 0.848 0.377 1589 chr5 142773585 142786016 + 0 NA exon (NM_000176, exon 2 of 9) exon (NM_000176, exon 2 of 9) 3454 NM_001020825 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 5.000 6.804 1.844 0.808 2.235 3.697 2.914 2.725 5.635 3.994 3.649 1.917 3.369 5.251 2.251 3.881 1.959 2.453 0.912 0.211 3.781 5.510 1.466 4.418 5.453 2.475 1.179 2.083 4.860 5.278 3.243 2.652 5.921 2.684 5.734 3.124 3.139 3.383 4.142 4.388 0.834 0.357 1768 chr7 66204299 66208755 + 0 NA intron (NM_014504, intron 1 of 8) CpG 884 NM_001287062 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 2.793 4.100 2.396 1.661 3.368 2.392 9.282 1.988 6.291 5.470 5.484 1.837 2.597 3.118 4.011 3.880 1.647 3.651 1.494 1.402 1.718 1.578 3.305 2.231 6.097 3.223 1.805 2.440 4.191 3.288 8.676 1.790 2.470 5.956 4.696 1.668 2.280 3.882 4.907 2.799 2.197 1.576 1665 chr6 34752494 34761073 + 0 NA Intergenic AluSx|SINE|Alu -3011 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 1.440 1.585 0.389 0.898 2.540 0.811 1.068 0.810 4.179 2.930 1.851 0.659 0.393 0.671 1.401 2.997 0.212 1.486 0.735 1.176 1.087 1.078 0.647 0.766 1.224 1.181 0.634 1.081 2.158 1.428 2.897 2.542 1.265 4.399 1.569 0.749 1.162 1.744 1.167 0.229 0.481 0.214 58 chr1 42799226 42808372 + 0 NA Intergenic Intergenic -2251 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 2.220 1.767 0.569 0.436 2.082 1.317 1.907 1.098 7.508 2.883 2.689 1.515 1.017 1.481 2.717 2.796 0.774 1.110 5.791 1.306 1.450 1.389 1.033 1.251 2.822 1.568 0.847 2.138 1.457 1.834 1.864 1.601 1.465 2.316 2.763 0.832 4.751 2.464 1.286 0.899 0.863 0.512 335 chr11 65231607 65280176 + 0 NA Intergenic Intergenic -9318 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 1.911 4.968 1.627 1.475 3.142 3.933 3.513 2.251 11.819 6.873 3.941 2.318 2.813 4.246 3.490 4.091 2.144 3.673 2.665 2.925 5.773 6.519 5.417 6.708 12.010 3.611 1.678 3.906 6.991 5.854 6.295 3.603 7.035 3.568 7.817 2.386 9.017 4.734 6.758 3.040 6.432 5.166 372 chr11 100618391 100625043 + 0 NA intron (NM_152432, intron 1 of 23) AluSq2|SINE|Alu -63031 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.075 0.224 0.223 1.023 3.596 0.321 0.132 0.474 0.532 0.174 0.256 4.471 0.071 0.197 1.788 4.639 0.286 1.680 0.059 0.260 0.181 0.211 0.072 14.725 0.100 0.083 0.230 0.195 0.477 0.077 0.047 1.035 7.369 0.028 0.388 0.981 0.148 3.353 0.240 0.017 0.015 77 chr1 68173467 68205182 + 0 NA intron (NM_018841, intron 2 of 3) MIR|SINE|MIR 38464 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 0.496 0.744 0.032 1.045 1.305 0.149 0.718 0.666 3.697 0.774 0.257 0.728 0.916 1.158 0.328 1.583 0.153 1.196 1.551 0.031 0.773 0.419 0.192 0.149 0.226 0.118 0.086 0.558 0.503 0.703 0.775 1.497 0.624 1.037 0.373 0.471 0.288 0.164 0.366 0.366 0.118 0.065 504 chr12 124559588 124587433 + 0 NA intron (NM_001204299, intron 2 of 4) intron (NM_001204299, intron 2 of 4) 115748 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 0.282 0.070 0.025 0.054 0.121 0.020 0.119 0.057 5.260 1.603 0.785 0.047 0.017 0.398 0.083 0.208 0.021 0.086 0.118 0.025 0.114 0.062 0.048 0.070 0.129 0.039 0.033 0.314 0.167 0.234 0.089 0.028 0.400 0.241 0.046 0.403 0.068 0.095 0.079 0.044 0.021 0.020 1702 chr6 114175171 114183051 + 0 NA intron (NM_002356, intron 1 of 1) intron (NM_002356, intron 1 of 1) 597 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 4.367 2.372 3.591 1.227 3.602 5.511 2.363 0.937 6.907 5.301 4.464 1.263 0.779 2.385 8.814 1.360 1.709 4.684 2.387 1.767 3.041 3.655 0.373 0.136 10.289 1.974 0.831 3.948 4.379 3.673 8.117 0.330 1.157 4.136 1.772 1.120 2.933 2.260 1.750 0.019 5.116 4.232 1977 chr9 130813422 130845705 + 0 NA promoter-TSS (NM_197956) promoter-TSS (NM_197956) 36 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 0.743 0.991 1.439 0.979 2.319 0.377 1.718 0.509 4.271 1.942 1.357 0.780 0.227 0.698 0.930 1.504 0.557 1.167 0.447 0.240 1.496 1.123 0.534 0.709 1.115 0.547 0.333 0.990 0.452 1.835 1.157 0.427 2.007 2.403 1.420 0.517 1.372 0.733 0.862 0.423 0.353 0.282 986 chr19 10762603 10771167 + 0 NA intron (NM_017620, intron 1 of 19) intron (NM_017620, intron 1 of 19) 1948 NM_153464 3609 Hs.465885 NM_004516 ENSG00000129351 ILF3 CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80 interleukin enhancer binding factor 3 protein-coding 2.346 2.327 3.121 0.928 3.122 2.579 4.793 0.863 nan 3.833 2.964 0.831 0.950 2.276 3.799 1.848 1.453 1.631 1.261 2.086 2.297 2.983 2.107 2.645 3.706 3.781 2.034 2.062 3.792 2.595 3.686 2.146 1.719 4.794 1.434 1.529 1.507 3.854 4.737 1.549 1.331 0.990 590 chr14 68591532 68667815 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 339364 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 0.805 1.009 0.874 0.424 0.609 3.219 2.146 1.520 3.867 1.763 4.440 1.215 0.883 2.012 0.806 1.021 0.767 1.104 0.151 1.586 3.099 1.859 0.228 0.773 0.783 0.183 0.120 1.987 0.692 1.066 0.943 1.494 2.484 0.418 1.292 0.321 1.173 0.846 2.382 1.279 0.253 0.177 1974 chr9 130299065 130349879 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 6924 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 2.427 2.916 1.281 1.791 4.967 1.375 5.545 1.442 9.262 4.919 3.000 2.438 1.727 1.859 1.785 2.949 1.711 1.287 0.382 0.052 2.740 2.841 0.486 2.618 2.902 2.807 1.190 2.501 3.897 2.605 4.675 0.262 2.472 6.229 2.270 1.155 3.514 1.276 2.236 2.223 2.635 2.087 893 chr17 61915532 61928521 + 0 NA Intergenic Intergenic -1675 NM_001098426 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 1.234 2.380 0.601 0.799 2.786 0.829 2.227 0.991 6.344 2.670 2.755 1.938 0.607 1.140 2.365 1.681 1.313 0.943 1.018 0.608 1.237 1.099 1.125 2.013 0.823 1.057 0.593 0.425 1.939 2.886 3.033 1.082 2.139 2.269 0.928 0.699 1.743 2.538 1.960 0.985 0.607 0.377 1043 chr19 42770547 42791400 + 0 NA intron (NM_001304815, intron 2 of 20) intron (NM_001304815, intron 2 of 20) -7844 NM_015125 23152 Hs.388236 NM_015125 ENSG00000079432 CIC - capicua transcriptional repressor protein-coding 2.767 4.758 0.711 1.120 3.352 2.446 1.731 0.600 nan 2.083 3.071 1.179 2.627 0.882 1.039 1.430 1.684 3.082 1.111 0.905 1.407 1.570 3.056 2.485 2.527 1.274 0.718 0.538 1.838 5.400 8.725 1.628 0.930 3.386 0.981 0.922 1.098 3.190 0.681 2.284 1.298 0.837 1073 chr19 48988425 49006254 + 0 NA exon (NM_001080434, exon 13 of 16) exon (NM_001080434, exon 13 of 16) 19107 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 1.494 1.846 0.131 0.996 2.328 0.883 1.201 0.859 nan 0.768 1.509 1.054 0.312 1.162 3.035 1.739 1.731 0.543 0.219 0.039 0.728 0.724 0.157 0.811 2.321 1.385 0.702 0.501 0.471 2.718 1.302 1.186 1.707 2.748 0.724 0.585 2.718 1.513 1.115 0.940 0.352 0.210 952 chr18 46446758 46489753 + 0 NA intron (NM_005904, intron 3 of 3) intron (NM_005904, intron 3 of 3) 922 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 2.440 3.373 0.325 0.278 0.545 4.373 0.706 1.023 2.682 1.525 1.212 0.528 1.127 1.749 1.402 2.031 0.530 3.679 1.722 0.531 1.686 1.740 0.684 0.617 1.254 0.652 0.325 1.054 3.106 2.000 1.728 1.154 1.205 0.693 0.225 0.744 0.254 0.907 0.710 1.585 1.759 1.527 1619 chr6 10398332 10431549 + 0 NA non-coding (NR_033910, exon 2 of 3) non-coding (NR_033910, exon 2 of 3) 530 NM_003220 7020 Hs.519880 NM_003220 ENSG00000137203 TFAP2A AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 transcription factor AP-2 alpha protein-coding 3.517 1.786 3.488 0.630 1.938 2.926 1.563 0.908 7.153 4.026 3.908 0.877 0.378 0.693 2.013 1.679 2.093 1.192 0.202 0.154 1.733 1.702 0.877 2.628 12.466 1.969 0.932 1.735 1.852 1.755 2.646 0.810 1.380 2.667 1.747 0.738 2.763 4.464 3.000 1.385 0.144 0.060 8 chr1 6548439 6558335 + 0 NA intron (NM_198681, intron 2 of 21) L2a|LINE|L2 -1626 NM_020631 57449 Hs.284232 NM_020631 ENSG00000171680 PLEKHG5 CMTRIC|DSMA4|GEF720|Syx|Tech pleckstrin homology and RhoGEF domain containing G5 protein-coding 0.481 2.487 0.095 1.118 2.605 1.433 0.416 1.002 nan 2.052 0.209 1.712 1.382 1.038 0.800 1.227 0.751 0.930 0.899 0.266 0.995 1.301 1.380 1.088 5.952 5.313 2.085 1.003 6.273 1.455 5.311 0.564 0.646 1.521 5.717 1.053 0.626 2.918 1.108 1.193 1.240 1.383 1020 chr19 37301399 37385402 + 0 NA intron (NR_038362, intron 2 of 2) AluSc|SINE|Alu 847 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 0.268 0.241 0.209 0.187 0.556 0.147 0.313 0.078 0.353 0.304 0.194 0.190 0.022 0.086 0.194 0.200 0.085 0.132 0.093 0.063 0.198 0.194 0.028 0.214 0.297 0.423 0.231 0.137 0.227 0.062 0.819 0.129 0.067 0.527 0.150 0.019 0.031 0.162 0.159 0.073 3.067 2.765 751 chr16 69425267 69460826 + 0 NA Intergenic Intergenic -15452 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 0.433 0.721 0.046 0.194 0.595 5.299 0.388 0.163 0.389 0.168 0.470 0.206 0.179 0.153 1.466 0.315 0.255 1.660 0.735 0.242 0.517 0.301 0.379 0.898 0.574 0.424 0.286 0.232 0.366 4.964 0.606 3.293 1.276 0.542 0.572 0.716 0.181 0.755 0.463 0.218 1.653 2.598 700 chr16 11404826 11414154 + 0 NA Intergenic Intergenic 29579 NR_135174 105371083 Hs.737495 NR_135174 ENSG00000263080 LOC105371083 - uncharacterized LOC105371083 ncRNA 0.333 0.339 4.982 0.092 0.181 0.461 0.403 0.254 0.615 0.181 0.704 0.283 0.176 0.445 0.789 0.708 0.349 0.651 0.043 0.104 0.606 0.224 0.705 0.288 0.472 0.135 0.142 0.608 1.582 0.349 0.303 0.819 0.406 0.229 0.517 0.078 0.123 0.324 0.256 0.156 2.953 1.900 918 chr17 77801141 77831555 + 0 NA Intergenic CpG -3135 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 1.346 2.383 0.244 0.663 1.525 0.652 1.978 0.656 11.208 5.553 2.241 1.649 0.628 1.048 0.807 2.364 0.949 0.663 1.561 1.244 1.521 1.362 0.389 2.121 1.127 0.366 0.206 0.475 1.116 3.196 0.949 2.183 1.878 2.619 1.465 0.732 1.460 3.275 0.286 0.509 0.197 0.102 799 chr17 9547153 9554370 + 0 NA intron (NM_153210, intron 1 of 14) MIR|SINE|MIR 1907 NM_001267576 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 1.950 1.157 8.439 0.712 2.671 4.660 1.928 0.820 2.709 2.352 3.120 1.068 0.523 2.018 1.587 2.171 1.905 0.270 0.763 0.614 1.802 1.513 0.929 1.595 5.852 4.443 1.598 3.151 1.835 3.769 3.761 1.519 1.438 4.846 3.210 1.237 1.695 2.967 3.121 1.734 4.333 2.522 314 chr11 57524452 57568875 + 0 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 17429 NM_001206885 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 2.241 0.496 4.037 0.755 1.821 1.014 1.310 1.266 3.471 1.973 4.492 1.287 0.490 1.106 2.897 2.556 1.815 2.056 0.298 0.091 1.195 0.790 0.327 0.706 0.874 0.596 0.396 1.691 0.758 1.639 0.535 0.627 1.431 1.882 0.915 1.133 2.065 0.215 0.789 1.004 0.198 0.226 1286 chr21 16236173 16261677 + 0 NA Intergenic Intergenic 188201 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 0.456 0.075 0.081 1.596 2.750 1.582 1.235 1.489 3.016 1.530 1.421 1.428 0.399 1.944 1.274 2.064 0.379 0.059 0.033 0.282 0.102 0.120 0.075 2.398 0.430 0.316 1.723 0.202 0.723 0.194 0.287 1.682 0.363 0.104 0.532 1.660 0.063 0.484 0.165 0.023 0.032 1573 chr5 132287319 132300435 + 0 NA intron (NM_014423, intron 1 of 20) intron (NM_014423, intron 1 of 20) 5477 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 1.485 1.761 2.901 0.391 1.479 1.832 1.241 0.655 2.798 1.796 1.811 0.769 0.494 1.492 1.390 1.568 0.907 0.794 0.503 0.550 1.379 1.540 1.017 1.084 1.088 1.600 0.766 1.009 1.152 1.797 1.908 0.900 1.541 2.328 1.855 0.623 0.632 1.427 1.311 1.064 1.317 0.894 1635 chr6 20400773 20405768 + 0 NA promoter-TSS (NM_001243076) promoter-TSS (NM_001243076) -640 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 9.004 5.800 2.643 1.478 6.079 8.950 5.903 1.985 9.494 5.367 10.159 2.659 1.388 2.275 5.010 4.083 1.814 3.434 2.489 6.657 3.826 6.917 1.887 5.856 10.973 8.721 3.455 3.122 3.625 4.604 9.549 2.591 3.723 11.801 6.768 2.448 2.760 11.333 4.763 2.839 1.775 1.211 64 chr1 49811310 49832743 + 0 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) 98943 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 3.373 0.083 0.067 0.026 0.118 0.014 0.060 0.971 0.356 0.320 0.129 0.176 0.036 0.086 0.093 0.005 0.025 0.061 0.026 0.010 0.021 0.053 0.062 0.017 0.011 0.033 0.176 0.038 0.036 0.044 0.140 0.060 0.030 0.143 0.217 0.024 0.011 0.058 0.013 0.017 147 chr1 154528275 154533373 + 0 NA exon (NM_017582, exon 1 of 13) exon (NM_017582, exon 1 of 13) 296 NM_017582 55585 Hs.607928 NM_017582 ENSG00000160714 UBE2Q1 GTAP|NICE-5|PRO3094|UBE2Q ubiquitin conjugating enzyme E2 Q1 protein-coding 3.212 2.668 1.168 0.968 3.813 4.191 2.635 1.235 5.407 3.392 3.284 1.493 1.970 2.983 2.145 2.602 1.254 2.168 3.581 3.180 2.596 2.880 3.188 4.643 4.569 3.947 1.755 1.807 1.721 3.807 3.213 11.363 6.551 3.329 3.308 2.035 3.415 10.908 2.965 1.440 1.999 1.228 449 chr12 54671024 54678595 + 0 NA promoter-TSS (NM_012117) promoter-TSS (NM_012117) 276 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 5.773 4.113 3.002 1.278 3.414 2.969 4.460 2.419 6.896 4.654 3.018 2.120 2.435 3.465 4.869 4.051 1.749 9.652 1.752 2.323 3.841 3.406 1.694 5.798 6.385 5.092 2.216 2.484 7.886 3.082 3.584 3.252 3.911 2.818 5.630 3.194 3.219 3.721 3.965 2.461 4.170 3.558 690 chr16 3029026 3048848 + 0 NA promoter-TSS (NR_033861) promoter-TSS (NR_033861) -118 NR_033861 283875 Hs.620489 NR_033861 LINC00514 LA16c-380H5.1 long intergenic non-protein coding RNA 514 ncRNA 1.265 1.086 0.150 0.230 0.843 0.843 0.892 0.191 8.143 3.261 0.818 0.464 0.232 0.490 0.818 1.055 0.883 0.386 0.218 0.196 0.469 0.397 0.684 0.896 0.941 0.556 0.271 0.480 0.363 1.096 0.876 0.699 2.261 1.281 0.826 0.376 1.245 1.782 0.535 0.369 0.379 0.228 35 chr1 27174743 27196646 + 0 NA Intergenic Intergenic -3939 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 2.310 1.532 0.785 1.011 2.119 1.510 2.802 1.440 5.423 1.821 1.852 1.740 0.410 1.615 1.838 2.342 1.933 0.680 0.644 0.530 2.187 2.651 0.420 1.785 5.122 1.699 0.701 1.034 1.315 1.589 0.873 0.587 1.334 3.927 2.442 1.305 1.243 2.331 1.405 0.859 1.316 0.877 56 chr1 42316253 42343655 + 0 NA intron (NR_038260, intron 1 of 2) intron (NR_038260, intron 1 of 2) 54424 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 0.192 0.626 0.142 0.499 0.654 0.046 0.439 0.549 1.162 0.238 0.208 0.766 0.628 0.299 0.961 1.767 0.021 2.288 0.044 0.025 0.818 0.547 0.019 1.022 2.575 0.084 0.063 0.858 0.233 0.107 0.272 0.173 0.290 0.568 0.074 0.160 0.374 0.233 0.621 1.259 0.069 0.077 1441 chr3 181427380 181434987 + 0 NA 3' UTR (NM_003106, exon 1 of 1) 3' UTR (NM_003106, exon 1 of 1) 1471 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 0.565 0.062 4.431 0.896 3.134 0.090 0.304 0.042 8.950 5.136 5.503 2.125 0.342 0.949 0.146 0.318 0.239 0.012 0.829 1.666 0.183 0.047 0.029 1.970 0.169 0.674 0.307 1.710 0.640 1.382 1.249 1.413 0.202 2.265 1.749 1.866 0.281 0.604 1.417 0.497 0.235 0.134 387 chr11 129058616 129063160 + 0 NA intron (NM_001142685, intron 1 of 21) intron (NM_001142685, intron 1 of 21) 1205 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 2.468 0.152 8.474 0.667 1.730 0.014 2.273 1.648 4.444 2.660 2.305 0.545 0.524 3.418 4.959 1.088 3.784 0.282 0.089 0.754 0.381 0.144 3.364 1.778 0.119 0.188 2.508 0.219 0.903 0.218 1.037 2.356 1.340 0.122 1.313 3.501 0.039 0.280 0.017 0.038 339 chr11 65404180 65421403 + 0 NA intron (NM_153253, intron 5 of 15) intron (NM_153253, intron 5 of 15) -3872 NR_039709 100616284 NR_039709 ENSG00000265874 MIR4489 mir-4489 microRNA 4489 ncRNA 1.180 1.781 0.621 1.210 2.842 2.079 0.671 0.536 3.549 1.906 1.367 0.763 0.513 1.518 1.311 1.080 0.364 0.586 0.772 0.250 0.795 0.608 0.911 0.559 2.866 0.878 0.503 0.648 0.854 1.642 2.031 0.462 1.991 1.676 1.264 0.781 1.445 2.078 0.769 0.679 0.344 0.203 1262 chr20 49317415 49389504 + 0 NA intron (NM_032521, intron 1 of 2) AluSg|SINE|Alu 5378 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 5.151 0.982 2.259 0.675 1.548 2.723 2.294 1.792 1.761 0.873 1.797 0.958 0.684 1.771 2.516 1.701 1.357 0.859 0.249 0.115 1.440 1.189 0.411 0.774 3.153 0.688 0.374 1.806 1.116 2.884 0.480 1.323 1.026 2.054 1.802 0.548 1.585 1.670 1.262 0.532 1.174 1.156 628 chr15 41055148 41069326 + 0 NA promoter-TSS (NM_001130448) promoter-TSS (NM_001130448) 78 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 0.491 0.852 0.246 1.167 2.503 1.969 0.931 0.466 7.342 3.857 2.474 1.304 0.505 1.635 0.844 2.338 0.469 0.636 0.612 0.372 1.018 0.986 0.394 0.337 0.564 0.359 0.310 0.479 0.231 0.536 1.525 0.364 1.258 2.956 0.586 1.515 0.542 1.239 0.817 1.541 0.102 0.043 1621 chr6 13350141 13372027 + 0 NA Intergenic Intergenic -32269 NM_001318806 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 0.281 0.403 0.060 0.200 0.688 0.192 0.418 0.362 0.283 0.191 0.408 0.300 0.315 0.464 0.260 0.354 0.113 3.496 0.045 0.025 0.389 0.221 0.014 0.088 0.222 0.223 0.146 0.267 0.302 0.149 0.125 0.043 0.165 0.788 0.224 0.151 0.045 0.154 0.550 0.581 0.150 0.123 1500 chr4 169399422 169410448 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -3270 NM_001012967 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DEAD-box helicase 60-like protein-coding 5.512 2.005 0.326 0.846 1.441 0.913 3.069 3.501 1.441 1.154 1.001 1.907 1.002 2.824 1.481 3.318 1.784 1.186 0.173 0.037 2.375 2.106 1.420 2.179 5.139 1.428 0.706 2.186 6.077 1.850 0.709 0.700 1.802 1.203 1.208 0.788 0.594 0.559 2.018 1.804 0.544 0.335 935 chr18 982482 1004872 + 0 NA Intergenic Intergenic 88480 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 0.087 0.322 0.011 0.435 0.453 0.050 0.081 0.033 0.112 0.079 0.140 0.081 0.016 0.068 0.247 0.067 0.021 2.690 0.973 0.012 0.208 0.094 0.079 0.632 0.130 0.210 0.161 0.089 0.299 0.022 0.101 0.035 0.122 0.196 0.012 0.356 0.168 0.034 0.191 0.020 0.013 0.002 323 chr11 63374597 63382472 + 0 NA intron (NM_001128203, intron 2 of 4) intron (NM_001128203, intron 2 of 4) 3375 NM_007069 11145 Hs.502775 NM_007069 ENSG00000176485 PLA2G16 AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 phospholipase A2 group XVI protein-coding 6.601 1.045 0.378 0.214 0.605 1.713 1.495 1.182 0.987 0.522 2.055 0.218 0.344 1.183 5.101 0.884 0.170 1.823 0.063 0.518 1.654 1.451 0.540 0.233 1.343 1.530 0.986 1.543 0.466 2.548 1.090 0.180 0.374 1.079 0.737 0.265 0.813 0.711 0.414 0.152 0.205 0.059 54 chr1 40704777 40712181 + 0 NA Intergenic AluSc8|SINE|Alu -5094 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 0.165 0.612 0.092 0.587 0.958 0.084 1.422 1.269 0.715 0.325 0.413 1.380 0.618 0.710 0.495 6.307 0.039 0.789 0.202 0.093 1.441 0.927 0.079 0.106 0.275 0.160 0.190 2.619 1.162 0.066 0.549 0.032 0.294 0.629 0.311 0.082 0.225 0.118 0.726 1.142 0.140 0.047 1639 chr6 22877505 22893778 + 0 NA Intergenic Intergenic -167488 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 3.579 0.732 1.628 0.549 0.772 0.503 0.507 2.288 0.674 0.277 1.480 0.476 0.197 2.392 0.460 0.151 0.058 1.245 0.049 1.149 0.405 0.032 0.304 1.114 0.632 0.369 0.264 0.688 0.130 0.163 0.276 0.563 0.563 0.034 0.661 1.212 0.196 0.288 0.818 0.752 0.424 24 chr1 23061817 23080905 + 0 NA intron (NM_017449, intron 1 of 15) AluJo|SINE|Alu 25351 NR_039832 100616391 NR_039832 ENSG00000265422 MIR4684 - microRNA 4684 ncRNA 4.402 1.103 1.271 2.133 2.983 0.745 1.447 1.370 1.963 0.907 0.928 1.477 1.423 2.627 0.658 2.747 0.190 2.384 0.076 0.015 1.365 0.981 0.177 0.302 2.824 1.799 0.862 1.443 3.394 0.940 0.611 0.302 1.206 2.059 2.410 0.424 0.759 0.477 0.580 1.605 2.206 1.875 1221 chr20 17659713 17663710 + 0 NA intron (NM_001042576, intron 1 of 25) CpG 1217 NM_001042576 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 1.410 6.721 2.278 0.334 2.070 2.562 1.946 1.502 9.106 6.562 13.043 1.826 0.930 2.031 3.591 0.919 1.752 1.039 0.919 1.319 2.453 3.082 3.897 2.382 4.416 4.248 2.013 2.297 4.100 10.030 4.853 2.293 3.390 3.639 3.306 2.427 4.426 4.784 2.066 3.251 1.911 1.520 1075 chr19 49370314 49380541 + 0 NA promoter-TSS (NM_014330) promoter-TSS (NM_014330) -222 NM_014330 23645 Hs.631593 NM_014330 ENSG00000087074 PPP1R15A GADD34 protein phosphatase 1 regulatory subunit 15A protein-coding 7.262 4.322 0.540 0.884 2.152 2.065 3.154 1.196 nan 4.533 3.424 1.204 1.270 2.514 2.664 2.538 0.952 3.676 0.859 0.717 1.452 1.816 1.107 1.366 4.477 3.645 1.390 2.227 5.315 3.974 2.783 4.024 1.408 4.586 2.074 0.666 3.551 2.529 2.305 1.602 3.221 2.562 1440 chr3 179039577 179044337 + 0 NA intron (NM_016331, intron 1 of 6) intron (NM_016331, intron 1 of 6) 406 NM_016331 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 5.541 2.732 10.509 0.800 2.099 2.631 4.387 1.306 2.639 2.247 3.481 0.766 0.954 2.157 3.681 2.712 1.641 2.097 1.027 1.771 3.513 4.405 3.464 2.814 6.466 4.435 2.371 1.108 3.102 2.721 5.244 2.705 2.966 3.339 3.849 1.106 1.985 4.129 2.330 1.382 1.463 0.919 1968 chr9 123686588 123694946 + 0 NA intron (NM_001190945, intron 1 of 8) intron (NM_001190945, intron 1 of 8) 684 NM_001190945 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding 0.612 1.838 0.030 2.513 2.814 0.284 2.583 0.795 2.523 1.090 0.880 1.086 1.112 1.692 0.588 2.215 0.172 2.051 0.553 0.016 2.270 2.051 0.837 0.721 6.355 1.601 0.969 0.553 1.638 1.373 6.918 0.539 1.567 1.623 1.500 0.379 0.708 3.162 1.280 0.425 0.041 0.030 224 chr1 245024342 245033992 + 0 NA Intergenic Intergenic -1340 NM_004501 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding 3.342 3.325 1.891 1.001 3.955 3.457 4.838 2.091 5.511 3.552 4.380 1.287 0.916 2.966 2.754 2.661 1.265 3.036 1.154 4.009 4.416 6.156 1.832 7.863 5.390 4.598 1.858 2.612 4.532 3.805 3.735 2.997 5.641 5.061 2.874 1.711 3.205 3.202 4.262 1.492 2.358 1.618 40 chr1 28826760 28856282 + 0 NA intron (NM_001048199, intron 3 of 11) AluSx|SINE|Alu -3224 NM_001048195 1104 Hs.469723 NM_001269 ENSG00000180198 RCC1 CHC1|RCC1-I|SNHG3-RCC1 regulator of chromosome condensation 1 protein-coding 3.529 2.387 1.466 0.912 2.487 1.733 3.794 1.801 3.992 2.584 2.535 1.302 0.586 2.989 2.862 2.705 1.473 1.817 0.698 1.367 2.488 2.702 1.472 3.641 2.838 2.269 0.827 2.367 1.638 1.619 2.481 1.320 2.349 3.150 3.631 1.658 2.485 2.813 1.894 0.858 0.958 0.765 448 chr12 54650514 54657874 + 0 NA promoter-TSS (NM_001127322) promoter-TSS (NM_001127322) -824 NM_001127321 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 0.991 4.066 0.034 0.463 1.364 4.050 1.631 1.048 2.003 1.028 0.115 0.654 0.080 2.061 0.254 0.841 0.078 10.637 1.725 0.019 1.214 0.597 2.758 2.533 5.439 3.952 1.821 0.657 0.448 2.002 3.553 2.946 0.649 0.418 0.846 0.750 0.157 1.060 2.399 2.286 2.183 0.981 773 chr16 89379761 89401831 + 0 NA exon (NM_001242885, exon 3 of 3) exon (NM_001242885, exon 3 of 3) 3255 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 1.496 3.063 0.034 1.658 3.320 3.089 0.970 0.970 2.200 0.787 0.671 2.630 2.833 0.864 1.186 4.343 0.576 4.833 0.533 0.151 3.788 3.739 0.583 2.998 4.102 9.204 3.732 0.808 7.056 2.370 2.833 3.280 1.739 3.688 7.692 0.950 0.779 0.916 2.562 2.827 2.771 3.556 1584 chr5 139486385 139494999 + 0 NA Intergenic Intergenic -3016 NM_005859 5813 Hs.443121 NM_005859 ENSG00000185129 PURA MRD31|PUR-ALPHA|PUR1|PURALPHA purine rich element binding protein A protein-coding 2.139 2.941 1.517 0.771 2.540 1.575 2.019 1.894 5.254 3.656 2.494 0.839 1.326 2.690 2.733 2.224 1.630 1.063 0.879 1.926 1.880 1.512 2.320 0.738 7.718 6.671 2.521 1.025 2.506 3.224 4.021 2.504 2.140 3.029 7.333 1.934 2.137 3.349 1.403 2.350 3.062 1.759 70 chr1 59036331 59055507 + 0 NA Intergenic Intergenic -2753 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 2.782 0.694 1.165 1.655 3.314 0.033 3.804 2.436 nan 2.371 4.185 1.585 0.887 3.004 3.427 4.155 1.448 1.677 0.034 0.028 1.997 2.023 0.073 0.440 5.723 0.557 0.281 3.490 2.715 0.098 0.200 0.044 1.641 4.850 4.100 1.068 2.563 0.103 1.129 1.267 0.502 0.701 209 chr1 226050694 226100190 + 0 NA intron (NM_020997, intron 2 of 3) CpG 1404 NM_020997 10637 Hs.656214 NM_020997 ENSG00000243709 LEFTY1 LEFTB|LEFTYB left-right determination factor 1 protein-coding 1.282 0.452 0.251 0.264 0.843 0.477 1.243 0.731 9.168 2.932 2.059 0.776 0.318 1.350 0.685 2.176 0.286 0.539 0.349 0.146 0.589 0.407 0.313 0.515 0.749 0.371 0.208 1.083 0.289 0.702 0.441 0.855 1.515 1.113 0.604 0.779 1.282 0.486 0.445 0.372 0.290 0.176 1084 chr19 53438120 53450546 + 0 NA intron (NM_001202473, intron 3 of 3) AluJb|SINE|Alu 1514 NR_037805 399669 Hs.745445 NM_203307 ENSG00000213801 ZNF321P ZNF321 zinc finger protein 321, pseudogene pseudo 2.001 0.394 2.021 0.426 1.375 0.070 0.819 0.274 0.322 0.176 1.452 0.678 0.114 1.125 0.942 0.870 0.284 0.390 0.096 0.078 1.016 0.879 0.036 0.199 0.488 0.263 0.207 0.625 0.499 0.072 0.536 0.380 0.438 3.819 0.156 0.020 0.568 0.244 0.693 0.405 0.158 0.094 451 chr12 57022271 57031336 + 0 NA intron (NM_013449, intron 1 of 28) intron (NM_013449, intron 1 of 28) -2688 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 3.955 2.583 2.652 0.850 2.962 2.950 2.775 1.487 7.463 5.753 4.272 1.574 1.660 2.162 3.587 2.312 2.187 1.921 2.253 2.442 2.015 2.148 2.050 4.290 3.951 3.717 1.631 1.483 5.608 4.983 6.641 2.898 3.038 2.960 3.713 2.235 2.639 5.218 2.401 2.617 2.357 1.101 1820 chr7 148821960 148825864 + 0 NA promoter-TSS (NM_001001661) promoter-TSS (NM_001001661) 404 NM_020781 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 7.095 5.906 2.267 2.187 6.688 6.116 10.218 2.514 8.716 6.769 12.806 2.733 2.646 3.312 6.134 3.635 2.813 4.868 3.712 4.543 3.814 4.978 3.603 7.217 6.318 5.255 1.945 4.849 6.585 6.714 7.063 3.769 4.678 5.632 7.478 1.411 6.460 12.258 5.223 3.535 3.555 2.033 241 chr10 34709298 34723510 + 0 NA intron (NM_001184791, intron 4 of 20) MER11B|LTR|ERVK 387849 NM_001184794 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.350 0.237 0.039 0.334 0.926 6.342 0.142 0.052 1.193 0.468 0.129 0.235 0.033 0.098 0.133 0.281 0.630 0.290 0.036 0.029 0.229 0.121 0.088 0.075 0.044 0.013 0.038 1.011 0.116 4.316 0.060 2.108 2.252 0.699 1.102 0.412 0.415 0.083 0.079 0.027 0.044 0.017 1646 chr6 28907112 28922581 + 0 NA Intergenic AluSp|SINE|Alu 3285 NR_103538 729583 Hs.453549 NR_103538 LINC01556 C6orf100|dJ25J6.5 long intergenic non-protein coding RNA 1556 ncRNA 1.075 1.399 0.855 1.114 2.598 1.538 1.009 0.851 4.053 2.744 1.310 1.233 0.441 1.178 2.220 2.959 0.222 0.786 0.254 0.547 1.754 1.071 0.186 0.686 1.429 0.609 0.320 0.627 0.310 1.810 3.604 1.041 1.585 1.877 5.355 0.569 0.589 1.804 0.770 0.237 0.086 0.039 145 chr1 153945838 153952209 + 0 NA intron (NM_006694, intron 3 of 4) intron (NM_006694, intron 3 of 4) 1428 NM_006694 10899 Hs.6396 NM_006694 ENSG00000143543 JTB HJTB|HSPC222|PAR|hJT jumping translocation breakpoint protein-coding 2.004 1.976 0.399 0.716 1.838 1.137 1.296 0.780 20.672 22.693 2.707 1.493 0.997 1.954 1.686 1.214 0.465 2.080 1.869 1.045 1.068 1.130 1.062 3.199 2.143 1.665 1.344 0.475 0.481 2.186 2.418 7.509 5.029 1.749 2.125 2.037 3.107 5.495 1.685 0.606 0.578 0.401 744 chr16 67200965 67213299 + 0 NA promoter-TSS (NM_001185057) promoter-TSS (NM_001185057) -624 NM_003946 8996 Hs.513667 NM_003946 ENSG00000140939 NOL3 ARC|FCM|MYP|NOP|NOP30 nucleolar protein 3 protein-coding 1.072 1.960 0.501 1.539 3.721 6.228 1.761 0.418 2.897 1.418 1.922 1.471 1.078 1.600 2.014 1.746 1.802 2.370 3.712 0.113 2.574 2.950 1.792 5.745 1.891 1.726 0.949 0.810 2.446 3.165 1.851 2.068 3.610 3.399 2.653 1.346 1.252 2.577 1.061 1.498 0.747 0.322 1834 chr8 29195975 29212731 + 0 NA intron (NM_057158, intron 1 of 4) intron (NM_057158, intron 1 of 4) 1969 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 4.392 5.235 0.044 0.668 1.661 4.227 2.211 1.994 5.022 3.393 1.685 2.513 1.021 0.532 6.057 2.728 0.291 4.079 2.969 0.083 5.075 6.257 0.053 6.010 4.763 2.780 1.422 0.502 0.733 6.165 0.178 5.395 5.484 1.990 0.061 6.171 3.809 3.772 1.656 5.018 0.058 0.027 771 chr16 88867782 88880431 + 0 NA intron (NM_030928, intron 9 of 9) intron (NM_030928, intron 9 of 9) 3920 NM_030928 81620 Hs.122908 NM_030928 ENSG00000167513 CDT1 DUP|RIS2 chromatin licensing and DNA replication factor 1 protein-coding 2.413 4.618 0.373 1.175 3.942 5.925 3.684 0.635 3.213 1.478 1.866 1.318 1.093 1.351 2.786 1.983 1.024 2.330 1.794 1.656 2.193 2.781 2.252 2.764 4.507 4.964 2.535 1.247 1.588 2.817 5.699 2.189 2.347 4.323 3.670 0.928 1.335 5.597 2.367 1.401 1.603 0.813 1057 chr19 45970014 45974416 + 0 NA intron (NM_006732, intron 1 of 3) CpG 962 NM_001114171 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 3.678 0.946 0.255 0.560 1.857 0.345 1.488 0.430 nan 2.718 2.421 0.382 0.409 0.880 2.275 1.039 0.693 2.610 0.588 0.694 0.362 0.397 0.440 0.234 0.973 0.630 0.320 0.229 1.601 1.701 7.983 0.786 1.037 10.606 0.509 0.747 0.849 2.273 0.126 0.415 1.138 0.498 1770 chr7 73149152 73162288 + 0 NA Intergenic AluSp|SINE|Alu -2523 NM_001301058 83451 Hs.647045 NM_148912 ENSG00000106077 ABHD11 PP1226|WBSCR21 abhydrolase domain containing 11 protein-coding 3.115 1.074 4.265 1.042 2.375 0.889 6.506 3.069 7.342 3.482 10.757 1.875 0.601 2.553 5.772 2.843 1.500 0.926 1.657 0.506 0.564 0.413 0.601 0.892 1.123 0.414 0.333 5.667 0.611 1.636 1.833 0.611 1.489 7.415 0.984 2.601 5.624 1.641 1.147 0.568 0.649 0.439 594 chr14 68900640 68956109 + 0 NA intron (NM_001321809, intron 9 of 11) intron (NM_001321809, intron 9 of 11) 167130 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.461 0.820 0.327 0.315 0.261 0.168 0.478 0.840 4.405 1.949 2.395 0.551 0.509 0.643 2.651 1.078 0.434 2.219 0.053 0.050 2.043 1.062 0.028 0.452 0.643 0.301 0.185 0.191 0.764 0.580 0.137 0.522 1.329 0.089 0.168 0.284 0.565 0.104 0.882 1.649 0.297 0.317 1404 chr3 138580147 138583992 + 0 NA Intergenic Intergenic 80793 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 5.098 0.563 0.033 2.266 3.352 0.130 8.208 4.693 8.770 2.457 3.054 3.011 2.455 5.466 2.407 9.155 2.017 2.808 3.408 0.109 5.374 5.577 0.212 2.308 1.087 0.752 0.426 8.421 5.473 2.456 5.449 3.089 2.509 3.105 3.363 2.482 0.843 0.729 4.497 2.133 1.066 1.129 1003 chr19 18459431 18505193 + 0 NA Intergenic Intergenic -14458 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 0.741 0.395 0.228 0.473 0.931 0.417 1.471 0.550 nan 4.303 3.344 0.440 0.260 0.845 2.313 0.868 0.767 0.865 0.582 0.245 1.283 0.769 0.610 1.670 1.024 1.237 0.631 0.748 0.703 2.795 1.743 4.082 0.856 1.230 0.706 1.313 1.170 2.534 1.530 0.346 0.628 0.587 1423 chr3 168848775 168870674 + 0 NA intron (NM_004991, intron 3 of 16) intron (NM_004991, intron 3 of 16) 4369 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 10.860 0.295 0.223 0.318 0.574 0.211 1.071 0.765 0.505 0.262 1.012 0.665 0.388 1.005 1.007 1.239 0.009 1.585 0.105 0.380 0.047 0.010 0.146 0.084 0.215 0.928 0.484 0.382 1.061 0.071 1.491 0.727 0.069 0.297 1.870 0.875 0.062 0.252 1.198 0.985 0.039 0.012 646 chr15 68307261 68320210 + 0 NA Intergenic AluY|SINE|Alu -32782 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 0.222 0.060 6.892 0.041 0.147 0.054 0.068 0.024 0.353 0.063 0.049 0.250 0.009 0.017 0.393 0.076 0.266 0.124 0.046 0.032 0.089 0.033 0.040 0.100 0.099 0.028 0.012 0.018 0.130 0.534 0.050 0.021 0.171 0.110 0.057 0.095 0.083 0.068 0.055 0.041 0.018 0.015 1187 chr2 217232551 217240155 + 0 NA 5' UTR (NM_020814, exon 1 of 4) 5' UTR (NM_020814, exon 1 of 4) 397 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 3.076 1.329 1.253 1.284 1.100 2.451 2.249 0.124 0.053 0.110 1.232 0.994 1.938 0.228 2.590 0.038 0.636 0.144 0.018 2.768 2.872 0.748 0.206 7.199 11.255 3.816 0.899 1.477 0.610 3.550 0.018 0.481 1.890 0.113 0.110 5.002 1.496 1.387 6.022 5.331 695 chr16 4333085 4378910 + 0 NA Intergenic AluSx|SINE|Alu -8765 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 2.493 2.261 0.165 0.633 1.332 1.679 1.640 0.779 3.443 1.622 0.839 0.567 0.293 0.813 0.543 2.238 0.734 0.936 0.353 0.332 1.759 1.631 1.311 1.155 1.448 1.158 0.565 0.721 1.422 2.996 1.995 1.134 2.639 2.222 2.087 0.270 0.508 1.894 0.737 0.799 0.599 0.387 383 chr11 128075229 128084585 + 0 NA Intergenic Intergenic 312298 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 2.667 3.295 2.743 2.051 4.119 8.606 4.160 5.454 1.202 1.419 0.934 3.749 2.411 6.566 2.305 2.844 3.792 2.215 0.085 0.029 2.955 2.333 0.583 0.142 17.543 6.659 2.667 4.083 7.575 0.418 1.833 0.322 1.731 1.339 11.043 0.631 2.639 1.257 2.868 3.781 1.582 0.969 506 chr12 124982767 125010106 + 0 NA intron (NM_001077261, intron 2 of 47) MLT1C|LTR|ERVL-MaLR 55574 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 3.253 0.603 0.998 0.695 1.927 0.287 1.329 0.461 9.700 4.990 2.965 1.717 1.198 0.621 0.918 1.814 0.952 1.349 0.704 0.081 0.960 0.766 0.275 0.646 0.446 0.468 0.255 0.734 0.499 0.917 2.244 0.571 0.583 3.760 1.094 0.667 0.368 1.078 0.450 1.223 0.699 0.371 1166 chr2 161124426 161129886 + 0 NA intron (NR_103775, intron 1 of 1) intron (NR_103775, intron 1 of 1) 1250 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 3.815 1.808 4.378 2.114 4.361 0.201 7.119 3.053 2.203 0.816 1.661 0.525 3.261 5.169 0.500 5.182 0.296 2.514 1.565 5.752 7.328 0.619 1.080 0.926 0.666 0.273 4.282 6.384 2.855 2.517 0.174 0.631 3.088 0.157 0.470 0.561 0.322 2.498 0.720 1.993 1.005 180 chr1 161085464 161089548 + 0 NA promoter-TSS (NM_001185094) promoter-TSS (NM_001185094) -356 NM_005600 4817 Hs.146406 NM_005600 ENSG00000158793 NIT1 - nitrilase 1 protein-coding 4.120 3.609 1.000 2.795 5.793 6.528 3.307 2.353 9.059 7.322 3.581 3.411 5.231 4.818 2.979 4.685 1.565 3.466 2.887 2.304 3.227 2.531 1.850 4.825 6.408 4.822 2.251 1.788 4.388 3.426 4.157 2.367 2.800 7.455 5.938 3.063 1.375 11.363 5.856 2.145 2.508 1.583 1316 chr22 18688023 18688640 + 0 NA intron (NR_136570, intron 1 of 11) AluSc8|SINE|Alu 299 NR_136570 100996415 Hs.645542 NR_136570 LOC100996415 - uncharacterized LOC100996415 ncRNA 1.399 6.458 1.336 0.314 0.339 1.752 5.992 0.167 nan 5.984 3.220 41.422 0.388 1.159 2.800 0.120 0.291 0.539 0.230 0.227 4.607 0.277 0.053 0.127 0.383 0.776 2.097 0.282 0.425 0.775 0.281 0.575 0.377 0.129 0.376 0.280 1058 chr19 46007196 46020306 + 0 NA intron (NM_003370, intron 1 of 12) AluSq2|SINE|Alu 3063 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator-stimulated phosphoprotein protein-coding 4.609 3.648 0.564 0.968 2.805 4.710 1.302 0.707 nan 2.145 1.747 0.932 1.202 1.367 3.425 2.754 2.220 2.515 2.204 1.599 0.790 0.949 1.085 1.692 5.614 3.346 1.260 0.865 1.463 6.731 9.579 2.431 1.649 3.942 1.207 1.512 2.331 4.457 0.475 1.448 1.674 1.129 1182 chr2 208191319 208204384 + 0 NA Intergenic Intergenic -63703 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 0.010 1.286 0.014 2.578 4.303 0.366 3.912 1.949 8.985 6.127 5.475 3.102 1.599 3.353 0.565 3.977 0.307 1.299 0.115 0.011 3.298 2.796 0.051 0.247 3.272 2.333 1.146 2.968 4.372 0.474 1.700 0.546 0.565 1.628 2.938 0.470 0.214 1.497 1.858 2.146 0.480 0.292 942 chr18 9135111 9139039 + 0 NA promoter-TSS (NR_110771) promoter-TSS (NR_110771) 324 NM_015208 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 4.356 3.746 2.320 0.752 4.921 3.453 3.911 1.308 5.212 4.221 4.354 2.584 1.285 1.735 3.190 1.901 1.776 1.425 2.645 1.594 1.556 1.426 2.736 1.691 7.406 3.479 1.664 1.132 3.035 3.815 7.870 3.468 4.532 8.825 4.197 1.986 3.902 6.823 2.349 2.643 0.933 0.635 991 chr19 13249759 13293790 + 0 NA Intergenic AluSx1|SINE|Alu 10492 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 2.650 2.126 1.356 1.709 3.224 4.187 4.173 1.583 nan 4.197 3.985 1.630 1.399 2.077 4.548 3.215 2.275 2.254 0.538 1.983 3.649 4.067 1.446 2.838 4.287 2.985 1.205 2.074 5.142 3.687 6.396 1.522 2.710 4.231 3.079 1.579 3.320 4.813 6.047 2.577 0.806 0.667 1939 chr9 69873802 69891694 + 0 NA Intergenic Intergenic -124964 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 3.071 0.074 0.038 0.827 2.080 0.011 4.032 0.932 0.451 0.301 0.103 0.883 0.571 2.645 0.070 2.862 0.032 0.104 0.039 0.431 1.035 1.143 0.017 0.070 0.294 0.269 0.214 2.338 0.201 0.059 0.466 0.031 0.071 1.007 0.046 0.471 0.042 0.019 1.201 0.653 2.149 2.443 1351 chr22 46066503 46090993 + 0 NA intron (NM_001167621, intron 1 of 10) L2a|LINE|L2 11070 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 3.274 2.879 2.044 0.789 2.055 4.414 3.203 0.866 1.505 0.984 3.340 0.405 0.727 1.369 5.125 1.548 1.382 1.865 0.186 0.175 1.828 1.633 0.716 0.730 3.623 0.959 0.443 0.579 1.805 2.405 0.616 0.393 1.052 1.202 0.703 0.480 4.000 1.198 2.297 0.791 0.994 0.699 1828 chr7 157128286 157135479 + 0 NA intron (NM_058246, intron 1 of 9) intron (NM_058246, intron 1 of 9) 2171 NM_058246 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 3.353 3.825 0.714 0.393 1.073 0.830 2.761 1.422 2.268 1.533 2.447 1.163 1.147 1.065 3.372 2.133 1.587 1.866 0.505 0.754 2.652 2.910 2.812 2.031 8.930 5.373 2.039 1.078 4.897 1.811 4.216 1.089 1.970 1.779 2.693 0.966 1.695 2.621 2.300 3.062 3.571 3.223 1932 chr9 33318040 33331414 + 0 NA intron (NM_002504, intron 9 of 23) AluY|SINE|Alu 34312 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 0.550 3.008 0.135 0.732 1.196 0.358 1.208 0.299 0.326 0.168 1.120 0.077 0.325 1.930 1.746 1.505 1.499 2.169 0.090 0.010 4.296 4.378 0.232 2.110 0.303 0.280 0.114 0.190 2.821 1.591 0.170 0.464 2.854 0.763 0.425 0.787 2.030 0.126 1.461 0.839 0.082 0.053 1519 chr5 10546767 10568144 + 0 NA Intergenic Intergenic -6980 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 0.558 0.995 0.032 2.218 4.141 1.551 2.388 2.723 1.016 0.425 0.316 1.356 1.065 1.288 0.678 6.888 0.367 1.369 0.019 0.078 2.873 2.567 2.205 1.508 2.972 4.591 2.542 1.636 1.095 3.042 1.916 0.673 0.727 8.194 2.673 0.614 0.289 2.214 2.984 0.437 1.253 0.961 1791 chr7 98963100 98979228 + 0 NA Intergenic AluSc|SINE|Alu -1134 NM_005720 10095 Hs.489284 NM_005720 ENSG00000130429 ARPC1B ARC41|p40-ARC|p41-ARC actin related protein 2/3 complex subunit 1B protein-coding 1.075 1.941 5.013 0.876 2.823 1.222 6.545 1.098 4.155 2.222 3.152 0.480 0.395 1.625 0.714 3.198 0.931 0.673 0.317 0.533 0.760 0.775 1.171 1.731 4.309 0.988 0.458 2.170 1.029 2.095 3.748 0.405 1.229 3.182 1.182 0.894 1.498 3.299 0.998 0.584 0.589 0.293 1549 chr5 56621705 56636626 + 0 NA Intergenic Intergenic 119264 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 0.272 0.080 0.013 0.634 0.613 0.093 0.921 1.320 1.087 0.275 0.811 1.101 0.213 0.824 0.601 3.083 0.083 0.694 0.046 0.034 0.753 0.234 0.049 0.197 0.064 0.077 0.063 0.370 0.159 0.246 0.057 0.068 0.533 0.437 1.090 0.222 0.167 0.124 0.354 0.155 0.062 0.092 542 chr13 111556287 111573044 + 0 NA intron (NR_104586, intron 1 of 4) intron (NR_104586, intron 1 of 4) 2789 NM_017664 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 3.038 1.862 1.095 1.620 4.187 0.893 0.733 0.753 2.690 2.071 1.129 0.809 0.767 0.732 1.814 2.189 0.616 0.570 0.633 0.903 0.944 1.117 0.527 1.173 5.676 1.705 0.866 0.453 1.138 1.513 1.331 1.293 0.891 5.885 0.906 0.613 1.153 1.779 1.157 1.414 1.055 0.817 1801 chr7 100523533 100531581 + 0 NA Intergenic Intergenic -19495 NM_005960 4584 Hs.703577 NM_005960 ENSG00000169894 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 0.170 0.069 5.672 0.190 0.104 0.048 0.161 0.130 0.555 0.090 1.412 0.018 0.030 0.027 0.322 0.256 0.452 0.117 0.024 0.017 0.093 0.009 0.065 0.087 0.126 0.030 0.020 0.285 0.284 0.142 0.067 0.010 0.209 0.223 0.046 0.339 1.036 0.083 0.117 0.129 0.019 220 chr1 236259874 236261496 + 0 NA Intergenic LTR10A|LTR|ERV1 -32204 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 0.853 0.523 0.231 0.232 2.379 0.958 2.394 3.813 1.043 0.525 0.223 0.074 0.183 0.413 2.923 2.178 2.299 3.771 10.150 1.197 1.738 5.978 2.712 9.975 1.519 1.348 3.472 1.857 3.110 3.364 5.048 3.066 15.186 0.628 1.058 1.884 3.996 5.151 0.424 1.313 0.847 1086 chr19 55982048 55989716 + 0 NA Intergenic Intergenic -1817 NM_033113 89887 Hs.525209 NM_033113 ENSG00000197483 ZNF628 ZEC|Zfp628 zinc finger protein 628 protein-coding 2.111 2.245 0.518 0.796 1.537 1.393 1.984 1.398 3.806 1.543 1.950 0.801 0.568 3.959 2.448 1.587 1.440 1.623 0.833 1.119 0.512 0.611 1.959 1.239 5.653 1.224 0.679 1.381 1.136 2.423 1.305 1.411 1.656 3.004 2.084 1.593 1.167 2.162 2.718 3.578 1.127 0.687 566 chr14 37331702 37353033 + 0 NA intron (NM_030631, intron 2 of 9) intron (NM_030631, intron 2 of 9) 79229 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 0.155 0.054 0.079 0.044 0.185 0.027 0.118 0.075 12.195 1.597 0.167 0.746 0.016 0.075 0.077 0.150 0.036 0.082 0.105 0.013 0.078 0.027 0.024 0.064 0.073 0.028 0.029 0.119 0.112 0.111 0.030 0.048 0.165 0.100 0.044 0.276 0.085 0.049 0.056 0.018 0.016 0.009 871 chr17 45951933 45975303 + 0 NA Intergenic AluSc8|SINE|Alu 9564 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 1.134 1.118 1.197 0.381 1.003 0.454 0.794 0.398 nan 1.203 0.962 0.231 0.508 0.638 3.674 1.098 1.069 0.632 0.223 0.592 0.648 0.755 0.521 0.581 1.152 1.306 0.827 0.534 1.215 1.087 1.354 0.462 0.671 1.004 0.435 0.665 1.105 1.208 0.676 0.525 0.439 0.253 869 chr17 44655185 44669387 + 0 NA Intergenic Intergenic -5198 NM_016632 51326 Hs.559259 NM_016632 ENSG00000185829 ARL17A ARF1P2|ARL17P1 ADP ribosylation factor like GTPase 17A protein-coding 2.804 1.672 1.239 0.533 1.120 0.714 0.836 0.790 nan 2.469 1.395 0.885 0.465 1.232 4.624 3.080 2.383 2.077 0.528 0.527 1.509 1.731 0.986 2.323 2.696 0.826 0.400 0.660 1.162 1.723 3.404 1.365 2.831 1.159 1.394 2.424 1.711 2.912 0.627 0.787 0.876 0.506 1843 chr8 38028717 38036300 + 0 NA intron (NR_045493, intron 1 of 3) AluSx1|SINE|Alu -1598 NM_001204878 9530 Hs.194726 NM_004874 ENSG00000156735 BAG4 BAG-4|SODD BCL2 associated athanogene 4 protein-coding 7.453 2.424 1.367 0.450 1.274 1.594 2.939 1.115 2.440 2.000 3.020 1.465 1.117 1.672 1.729 1.876 0.794 1.808 1.205 3.144 2.095 2.311 0.876 1.627 4.687 5.063 2.124 0.602 2.488 3.013 2.335 1.249 1.905 1.247 1.042 1.739 0.903 2.584 1.436 1.078 0.885 0.516 786 chr17 4868829 4873763 + 0 NA promoter-TSS (NM_004890) promoter-TSS (NM_004890) -164 NM_004890 9552 Hs.90436 NM_004890 ENSG00000091640 SPAG7 ACRP|FSA-1 sperm associated antigen 7 protein-coding 2.187 4.859 1.537 3.181 5.726 5.871 6.589 1.860 12.690 9.155 4.748 2.177 2.833 3.777 4.916 5.033 1.509 6.218 2.093 3.057 2.036 2.876 2.144 7.275 12.274 2.714 1.337 6.704 3.783 5.619 5.106 3.610 3.142 5.941 9.083 2.801 2.191 9.610 6.495 4.659 5.025 3.292 1159 chr2 113992038 114000683 + 0 NA intron (NR_047570, intron 2 of 2) MIRb|SINE|MIR 2514 NR_015377 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 6.002 3.513 1.490 1.728 3.372 5.024 1.723 0.660 0.223 1.506 2.730 1.892 3.368 3.734 4.211 0.836 3.157 0.035 0.561 3.235 2.733 0.572 2.066 16.308 4.748 1.923 2.711 11.021 2.055 2.002 1.498 1.484 1.517 2.715 0.878 0.135 4.148 3.828 6.605 6.786 6.117 884 chr17 49193264 49206122 + 0 NA Intergenic Intergenic -1467 NM_001130527 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 2.575 2.183 3.587 1.151 2.693 1.495 2.032 1.287 nan 2.516 2.187 0.792 0.983 1.589 1.878 3.272 0.663 1.408 0.605 0.355 2.168 1.830 0.876 2.315 3.175 1.195 0.607 1.402 3.400 3.111 3.098 3.029 1.677 5.028 2.099 0.621 1.434 2.447 1.587 0.670 1.130 1.024 1353 chr22 46168962 46184273 + 0 NA intron (NM_013236, intron 9 of 11) intron (NM_013236, intron 9 of 11) 20213 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 2.123 0.339 0.531 0.174 0.712 3.257 0.538 0.063 2.628 0.646 2.163 0.525 0.023 0.486 0.739 0.245 0.125 0.169 0.026 0.947 0.599 0.047 0.093 0.101 0.024 0.010 0.136 0.137 0.568 0.070 0.622 1.197 1.574 0.092 0.553 3.914 0.065 0.607 0.044 0.113 0.047 1318 chr22 19465577 19468173 + 0 NA promoter-TSS (NM_001178010) promoter-TSS (NM_001178010) -137 NM_005659 7353 Hs.474213 NM_005659 ENSG00000070010 UFD1L UFD1 ubiquitin fusion degradation 1 like (yeast) protein-coding 7.970 5.686 11.742 2.164 6.647 5.739 8.324 3.581 17.376 9.013 6.773 3.310 2.199 3.575 3.527 2.510 2.552 3.535 2.236 3.478 2.076 3.249 3.223 5.586 7.107 5.989 2.278 3.282 4.887 3.354 5.463 3.686 5.063 8.782 4.332 3.002 4.939 5.629 5.228 3.551 2.005 1.282 1612 chr6 1310009 1329068 + 0 NA Intergenic AluSp|SINE|Alu 6863 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 2.478 0.489 0.016 0.110 0.061 0.020 1.523 2.112 1.041 0.663 2.747 0.368 1.066 0.308 3.784 3.769 0.151 1.181 0.037 0.059 3.102 3.040 0.027 2.395 0.170 0.288 0.216 0.112 0.867 0.995 0.115 2.939 1.488 0.049 0.287 1.684 0.158 0.343 0.701 2.274 0.030 0.035 170 chr1 156459776 156488596 + 0 NA Intergenic Intergenic -3552 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 1.946 2.962 1.124 0.842 2.078 5.616 2.193 1.657 4.984 2.884 2.295 1.731 2.584 2.103 1.313 2.218 0.775 2.617 4.243 1.726 3.230 3.862 2.367 4.291 4.572 3.540 1.277 1.288 2.207 3.201 2.660 1.393 2.557 3.350 2.455 1.921 1.928 7.590 2.762 1.801 1.479 1.255 345 chr11 66137404 66140842 + 0 NA non-coding (NR_125343, exon 1 of 12) non-coding (NR_125343, exon 1 of 12) 168 NR_125343 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 5.230 2.654 6.800 1.117 3.852 6.271 4.371 2.534 7.732 4.724 6.265 4.076 0.892 4.682 7.711 3.999 1.639 4.164 2.948 4.353 1.882 1.742 2.347 3.902 6.764 4.733 2.562 3.042 0.691 3.735 3.787 8.906 6.131 4.574 8.122 3.419 5.636 8.142 2.448 1.787 0.201 0.133 998 chr19 17344895 17372543 + 0 NA Intergenic Intergenic -2568 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 1.077 1.507 0.799 0.472 1.886 1.978 1.042 0.602 nan 2.104 2.269 0.576 0.210 0.800 3.268 1.087 1.272 0.793 0.973 1.060 1.320 1.254 1.327 1.440 1.047 1.493 0.791 1.639 0.572 3.126 2.265 1.141 1.146 1.564 1.180 0.927 1.797 2.571 1.203 0.090 0.229 0.125 636 chr15 63378887 63407203 + 0 NA Intergenic Charlie1a|DNA|hAT-Charlie -20954 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 0.305 0.928 0.162 0.082 0.161 1.732 0.084 0.643 0.367 0.126 0.687 0.412 0.525 0.246 0.173 0.277 0.051 2.330 0.074 0.059 1.977 1.281 0.232 0.097 0.559 0.141 0.119 0.086 5.771 1.929 0.315 0.017 0.210 0.393 0.078 0.100 0.126 0.086 0.419 0.456 1.070 1.003 1698 chr6 106529696 106596929 + 0 NA Intergenic Intergenic 16575 NM_182907 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 0.263 0.237 0.238 0.582 1.026 0.145 0.344 0.595 3.084 0.864 0.718 0.503 0.194 1.265 0.845 0.898 0.192 1.081 0.045 0.010 0.629 0.319 0.044 0.390 0.126 0.279 0.160 0.615 1.797 0.426 0.362 0.049 0.454 0.904 0.051 0.483 0.615 0.161 0.170 0.113 0.800 0.724 262 chr10 92671480 92695058 + 0 NA Intergenic Intergenic -2237 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 0.341 1.319 2.342 0.137 0.171 1.359 0.223 0.926 0.147 0.102 0.271 0.050 0.286 0.674 0.791 0.638 0.142 3.170 0.059 0.029 2.771 2.471 1.369 0.982 1.453 2.553 1.198 0.163 0.751 1.515 0.192 0.291 0.127 0.671 1.662 0.166 0.586 0.054 0.848 1.127 2.604 1.750 1156 chr2 111874458 111881435 + 0 NA promoter-TSS (NM_207002) promoter-TSS (NM_207002) -545 NM_001204109 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 2.377 2.425 0.132 2.121 5.546 0.787 4.545 1.073 4.428 2.216 2.933 1.597 0.579 1.532 2.705 2.137 1.152 1.283 0.701 0.626 1.344 0.984 1.150 1.075 2.101 1.321 0.937 1.218 1.549 2.707 3.741 1.283 2.141 6.760 2.301 1.172 1.605 3.563 1.527 0.958 0.660 0.546 1962 chr9 114359971 114365999 + 0 NA promoter-TSS (NM_001146109) promoter-TSS (NM_001146109) -850 NM_001146109 22949 Hs.584864 NM_012212 ENSG00000106853 PTGR1 LTB4DH|PGR1|ZADH3 prostaglandin reductase 1 protein-coding 1.144 7.424 0.340 0.983 1.542 1.648 4.009 0.857 nan 1.502 1.560 0.971 0.867 1.178 5.765 6.121 0.938 5.719 0.150 0.602 6.620 7.774 1.046 16.994 2.242 2.086 1.022 0.559 4.956 6.519 2.624 1.268 5.539 0.901 1.406 2.938 1.579 1.677 1.783 1.364 0.048 0.052 1694 chr6 90528316 90540744 + 0 NA Intergenic L1MC5|LINE|L1 -5017 NM_014611 23195 Hs.529948 NM_014611 ENSG00000112159 MDN1 Rea1 midasin AAA ATPase 1 protein-coding 1.225 1.221 2.557 0.821 1.657 0.836 1.178 0.442 3.566 1.974 1.401 0.498 0.444 1.279 1.291 1.426 0.542 1.390 0.280 0.781 1.126 0.776 0.487 1.046 1.180 1.868 0.881 0.918 0.529 1.116 2.801 0.780 0.754 2.342 2.285 0.591 0.549 1.622 1.150 0.679 0.733 0.350 600 chr14 74001991 74006031 + 0 NA promoter-TSS (NM_001037161) promoter-TSS (NM_001037161) 83 NM_001037161 641371 Hs.446685 NM_001037161 ENSG00000184227 ACOT1 ACH2|CTE-1|LACH2 acyl-CoA thioesterase 1 protein-coding 0.177 1.095 2.396 0.047 0.077 5.564 3.017 0.756 0.787 0.141 2.704 1.699 0.377 1.432 0.071 2.824 0.142 0.824 1.536 0.451 3.770 5.344 0.656 0.232 6.540 14.357 5.091 0.457 5.667 1.936 7.000 2.300 5.494 0.211 1.574 4.032 0.266 5.068 1.490 2.416 0.185 0.113 1493 chr4 129519692 129526389 + 0 NA Intergenic Intergenic 173869 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 0.939 0.908 0.028 0.878 1.107 0.086 0.661 1.065 3.570 1.325 1.315 1.682 1.872 0.225 0.172 2.459 0.071 2.951 0.583 1.307 0.758 0.044 6.188 0.154 0.143 0.080 0.470 3.488 1.912 0.500 5.157 1.735 0.642 0.992 0.565 0.054 0.043 1.105 0.365 0.103 0.030 1704 chr6 122231410 122265596 + 0 NA Intergenic L2b|LINE|L2 -472193 NM_001243094 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 0.055 0.064 0.022 0.061 0.111 0.039 0.082 0.089 0.732 0.238 0.222 0.115 0.090 0.070 0.191 0.100 0.020 0.204 0.021 7.226 0.022 0.009 0.052 0.036 0.051 0.012 0.007 0.020 0.102 0.060 0.052 0.035 0.076 0.058 0.038 0.043 0.022 0.015 0.041 0.020 0.022 0.018 1240 chr20 35233272 35243999 + 0 NA intron (NM_001199534, intron 3 of 3) AluSq2|SINE|Alu 4498 NM_199483 55969 Hs.584985 NM_018840 ENSG00000101084 C20orf24 PNAS-11|RIP5 chromosome 20 open reading frame 24 protein-coding 2.991 2.670 0.295 0.623 2.483 2.396 4.377 1.190 nan 1.615 2.137 0.818 0.719 2.191 3.546 1.736 0.999 2.236 0.716 0.515 1.642 1.774 0.661 2.996 1.498 1.484 0.775 1.975 1.769 1.466 1.513 1.346 1.859 2.860 1.099 1.685 0.788 2.106 1.617 1.110 0.350 0.241 1973 chr9 130278057 130287704 + 0 NA intron (NM_001035534, intron 5 of 13) MLT1B|LTR|ERVL-MaLR 48516 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 2.394 3.985 0.052 2.217 4.725 0.177 0.288 0.665 0.610 0.448 0.218 2.515 2.603 0.446 1.029 3.462 1.348 0.874 0.054 0.817 0.642 0.137 0.112 5.336 10.245 3.245 0.795 4.396 0.201 7.042 0.032 0.102 5.070 0.284 0.101 0.213 0.608 3.054 3.723 6.839 5.655 936 chr18 2654814 2657456 + 0 NA promoter-TSS (NR_033754) promoter-TSS (NR_033754) 249 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 - structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 6.139 7.141 1.901 2.239 7.724 4.886 5.342 1.486 9.159 5.277 8.556 2.355 1.906 2.526 5.532 3.133 3.317 2.576 6.069 2.557 1.656 2.459 4.839 3.555 10.237 7.022 4.228 2.348 5.380 5.441 12.707 4.360 5.816 13.336 5.509 1.952 4.719 16.488 3.978 2.628 1.583 0.904 1027 chr19 39336532 39370165 + 0 NA Intergenic LTR35A|LTR|ERV1 -10369 NM_001005335 3191 Hs.644906 NM_001533 ENSG00000104824 HNRNPL HNRPL|P/OKcl.14|hnRNP-L heterogeneous nuclear ribonucleoprotein L protein-coding 2.093 2.598 1.008 1.095 2.950 1.509 2.553 0.849 5.229 2.392 1.881 0.660 0.981 1.074 2.135 1.567 1.964 1.433 2.894 0.873 1.488 1.677 1.853 2.781 2.202 3.429 1.492 0.724 1.291 4.328 3.801 2.133 1.638 4.128 1.107 1.397 2.419 1.942 1.028 0.661 0.813 0.571 274 chr10 115610339 115618010 + 0 NA promoter-TSS (NM_198514) promoter-TSS (NM_198514) -11 NM_001271816 9937 Hs.1560 NM_014881 ENSG00000198924 DCLRE1A PSO2|SNM1|SNM1A DNA cross-link repair 1A protein-coding 2.043 3.324 1.576 0.666 1.719 2.524 3.271 1.326 4.614 3.052 2.222 0.894 1.204 2.328 1.633 2.759 0.760 2.233 1.832 2.129 1.913 2.416 1.525 2.947 4.402 2.979 1.274 1.385 1.366 3.205 3.377 0.971 2.026 2.046 7.796 1.496 1.205 2.603 2.019 1.151 0.896 0.501 870 chr17 45907629 45916771 + 0 NA intron (NM_033413, intron 3 of 7) L3b|LINE|CR1 3207 NM_033413 90506 Hs.130767 NM_033413 ENSG00000141294 LRRC46 - leucine rich repeat containing 46 protein-coding 0.771 0.877 0.246 0.312 0.874 0.598 0.363 0.843 nan 1.170 0.647 0.390 2.288 0.542 0.832 2.296 0.272 0.823 0.075 0.593 0.537 0.334 0.560 0.527 4.329 2.751 1.435 0.205 4.440 0.926 1.101 0.596 0.466 0.838 0.527 0.348 0.480 1.154 0.563 1.478 0.455 0.334 606 chr14 81684819 81689442 + 0 NA promoter-TSS (NR_135252) promoter-TSS (NR_135252) 166 NM_015859 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 5.769 4.126 4.770 0.701 2.405 7.621 9.278 2.670 11.439 9.213 11.204 3.233 2.668 2.004 3.030 3.946 2.094 3.441 3.446 2.516 5.727 7.737 1.749 4.537 6.197 5.776 2.199 5.002 6.717 6.093 9.163 2.837 5.495 2.920 6.137 3.152 4.077 7.641 9.034 6.595 2.803 2.022 612 chr14 102719726 102788735 + 0 NA intron (NM_001330234, intron 1 of 11) AluYb8|SINE|Alu 17307 NM_001272011 5891 Hs.104119 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 3.844 1.102 0.276 0.176 0.363 5.557 0.731 0.623 1.193 0.565 1.124 0.894 1.102 0.691 1.591 1.101 0.292 0.871 0.158 0.299 3.844 3.405 0.385 3.020 2.279 1.950 0.911 0.623 2.658 1.100 4.153 0.561 1.970 0.379 1.903 0.374 0.603 1.939 1.488 4.252 1.279 1.159 1113 chr2 26971791 26995467 + 0 NA Intergenic LTR56|LTR|ERV1 -3513 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 0.845 1.357 0.170 1.142 2.684 1.932 0.964 0.494 3.674 1.952 1.457 0.905 0.792 1.421 1.054 2.919 1.450 1.867 0.127 0.244 0.865 0.614 1.586 1.333 3.744 2.260 1.045 1.258 0.845 3.009 1.645 4.512 1.835 3.253 1.268 1.124 1.449 1.998 2.135 0.710 0.929 0.633 1246 chr20 42793571 42817466 + 0 NA TTS (NM_175913) TTS (NM_175913) 10700 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 0.982 0.676 0.023 0.048 0.138 0.430 0.099 0.150 0.379 0.123 0.152 0.043 0.079 0.138 3.269 0.080 1.977 0.119 0.046 0.029 0.101 0.051 0.256 0.777 2.606 0.343 0.219 0.061 0.957 0.484 0.108 0.059 0.640 0.112 0.065 0.319 0.319 0.861 0.716 0.458 2.079 1.612 1415 chr3 158485520 158492598 + 0 NA Intergenic Intergenic -30656 NM_001289407 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 7.872 0.248 0.020 0.109 0.188 0.836 0.106 0.165 0.194 0.014 0.108 0.553 0.183 1.266 4.357 1.232 0.674 2.652 0.071 0.204 0.104 0.095 0.205 0.156 0.754 0.188 0.043 0.213 1.668 0.141 0.034 4.116 0.079 0.065 0.137 3.096 0.070 0.191 1.201 0.016 0.014 1313 chr21 47742021 47746035 + 0 NA promoter-TSS (NM_001286477) promoter-TSS (NM_001286477) -8 NM_006031 5116 Hs.474069 NM_006031 ENSG00000160299 PCNT KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4 pericentrin protein-coding 4.398 4.646 2.944 1.989 5.088 4.807 4.618 2.459 10.274 3.966 6.331 2.574 4.203 3.396 5.651 6.954 2.231 2.332 1.802 3.331 2.559 4.030 4.684 5.279 9.876 4.709 2.464 2.154 6.776 3.912 7.002 4.007 4.387 9.383 6.626 3.569 2.723 7.849 2.923 3.205 3.027 1.673 1585 chr5 139673108 139683975 + 0 NA intron (NM_002622, intron 2 of 3) AluSq2|SINE|Alu 4148 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 1.033 1.807 4.310 0.228 0.770 0.602 1.242 1.165 1.336 1.113 0.812 0.470 0.403 1.789 0.957 1.400 0.466 1.108 0.211 0.166 2.249 1.766 1.191 0.678 1.085 0.766 0.478 0.997 0.689 0.767 0.939 0.581 0.923 1.424 5.645 0.587 0.403 0.605 0.918 0.627 0.445 0.314 342 chr11 65654259 65689175 + 0 NA Intergenic L1MB5|LINE|L1 -3720 NM_005438 8061 Hs.283565 NM_005438 ENSG00000175592 FOSL1 FRA|FRA1|fra-1 FOS like 1, AP-1 transcription factor subunit protein-coding 5.957 5.692 0.152 1.985 4.310 4.444 3.217 3.122 2.985 1.757 1.163 3.288 4.862 5.094 3.504 8.218 0.971 3.563 0.933 0.648 4.908 6.328 2.314 2.567 20.121 11.928 4.466 3.872 16.130 3.059 7.777 0.671 2.156 5.516 15.712 1.196 1.599 4.757 4.238 6.678 6.204 4.785 1598 chr5 157025644 157036443 + 0 NA Intergenic Intergenic -28212 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 3.569 0.596 0.017 1.499 2.419 0.368 0.057 4.487 2.135 1.685 0.665 2.662 5.020 2.591 1.407 4.444 0.065 1.174 0.019 0.698 0.294 0.057 0.738 3.444 1.527 0.848 0.220 5.477 0.143 0.851 0.080 0.535 0.797 2.528 1.052 0.154 0.070 1.612 4.084 4.704 5.499 714 chr16 21777287 21804715 + 0 NA Intergenic AluSz|SINE|Alu 39494 NR_003370 730092 Hs.31290 NR_003370 RRN3P1 - RRN3 homolog, RNA polymerase I transcription factor pseudogene 1 pseudo 2.535 0.236 0.082 0.284 0.399 0.513 0.530 1.221 0.825 0.265 0.183 0.565 0.387 2.691 2.999 2.075 0.056 0.855 0.121 0.010 1.089 0.713 0.086 3.840 0.477 4.330 2.349 1.141 2.535 0.478 0.100 3.121 1.819 0.489 1.185 0.884 0.244 0.087 0.821 0.820 0.424 0.402 1840 chr8 37389759 37405677 + 0 NA Intergenic Intergenic -18814 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 0.682 1.064 0.023 0.036 0.074 0.040 0.094 0.106 2.121 0.747 0.097 0.074 0.305 0.114 2.564 0.560 0.018 2.067 0.038 0.070 0.568 0.247 0.051 0.040 1.600 0.242 0.308 0.034 5.844 0.292 0.098 0.010 0.193 0.044 0.035 0.387 0.062 0.078 1.075 1.123 1.807 1.579 1588 chr5 142618387 142634764 + 0 NA Intergenic AluSz|SINE|Alu 54510 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 0.964 2.382 0.309 1.542 2.536 1.400 2.348 2.051 4.059 1.882 0.691 2.036 3.292 4.288 1.329 5.066 1.325 3.152 0.042 0.051 5.668 4.967 0.288 2.417 5.238 1.329 0.594 2.253 4.771 1.601 1.195 1.287 1.413 1.634 6.159 0.906 0.699 0.402 2.523 3.330 1.639 1.076 1200 chr2 235401911 235412705 + 0 NA Intergenic Intergenic -1611 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 1.744 0.701 0.236 0.757 1.189 0.198 0.282 0.363 1.588 0.431 1.440 2.498 2.407 0.142 2.905 2.360 0.558 0.951 0.658 0.064 1.505 1.246 0.685 0.313 0.889 0.502 0.383 0.482 3.022 2.301 2.228 1.178 0.197 1.195 2.166 0.113 0.544 2.104 1.394 1.830 2.659 2.756 257 chr10 71196490 71235936 + 0 NA intron (NM_012339, intron 1 of 7) LTR56|LTR|ERV1 4987 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 1.317 0.532 0.359 1.530 2.863 0.163 2.816 1.784 2.684 0.819 1.234 0.571 0.325 2.443 2.671 3.601 0.406 0.770 0.314 0.035 2.561 2.203 0.180 1.449 1.097 0.391 0.227 1.382 0.168 2.797 0.390 0.627 2.569 2.514 0.668 1.105 1.742 0.580 1.856 0.488 0.101 0.072 167 chr1 155928397 155960255 + 0 NA intron (NM_001162384, intron 1 of 21) intron (NM_001162384, intron 1 of 21) 3640 NM_004723 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding 1.085 2.650 0.388 0.923 1.472 3.223 1.549 1.243 5.293 3.209 1.530 1.527 3.179 1.584 1.647 3.268 0.364 2.553 1.046 0.810 2.884 2.751 0.869 3.394 2.468 2.230 0.994 0.605 2.392 2.011 3.033 0.295 0.872 1.584 3.472 1.451 0.415 2.624 2.578 1.783 1.070 0.744 1150 chr2 100625779 100636390 + 0 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 90961 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 0.082 0.052 0.006 0.090 0.024 0.077 0.030 0.493 0.428 0.053 0.027 0.268 0.031 0.071 0.174 0.027 0.576 0.029 0.026 0.032 0.027 0.526 0.150 0.240 0.057 0.044 0.036 6.842 0.031 0.073 0.148 0.019 0.033 0.044 0.011 0.070 0.301 0.036 0.072 0.443 0.283 1491 chr4 129433728 129451673 + 0 NA Intergenic Intergenic 93529 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 1.105 1.140 0.504 0.604 0.919 1.441 0.966 1.557 1.902 0.835 1.140 1.350 1.318 1.138 0.720 3.360 0.772 3.514 0.045 0.037 2.547 1.619 0.327 3.150 1.328 1.068 0.580 0.952 8.437 1.361 0.531 1.176 1.656 0.944 1.603 0.758 1.424 0.220 1.376 0.901 0.600 0.522 127 chr1 151368377 151374517 + 0 NA promoter-TSS (NM_002796) promoter-TSS (NM_002796) -594 NM_002796 5692 Hs.89545 NM_002796 ENSG00000159377 PSMB4 HN3|HsN3|PROS-26|PROS26 proteasome subunit beta 4 protein-coding 1.780 1.639 0.715 1.172 2.311 2.076 1.498 0.821 15.815 11.151 1.088 1.393 1.478 1.987 1.858 2.585 0.544 1.952 1.136 0.731 1.803 1.362 1.397 2.835 3.080 2.880 1.341 0.672 1.369 1.973 2.345 4.147 3.136 2.945 1.748 1.193 1.972 4.416 2.319 0.686 1.641 0.956 1465 chr4 6987416 7002475 + 0 NA intron (NM_001286805, intron 1 of 11) intron (NM_001286805, intron 1 of 11) 5710 NM_001286805 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 0.832 1.062 0.228 0.932 2.133 0.318 1.004 0.772 1.547 1.098 0.583 0.652 0.707 1.087 1.042 3.171 0.688 0.468 0.192 0.156 1.148 0.736 0.734 0.274 1.827 1.183 0.638 0.614 0.939 0.643 1.462 0.290 0.525 2.642 0.717 1.407 0.401 0.649 0.726 0.341 0.451 0.257 1535 chr5 36874305 36879961 + 0 NA promoter-TSS (NR_046262) promoter-TSS (NR_046262) 272 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL, cohesin loading factor protein-coding 3.804 4.491 2.242 1.595 4.471 2.640 6.105 2.455 11.452 8.650 6.599 2.102 2.910 2.235 6.291 4.073 2.943 3.131 2.991 4.543 3.367 3.827 2.240 3.346 5.488 5.034 1.943 2.836 2.175 3.598 5.834 5.008 4.421 4.611 3.640 3.317 3.933 10.168 5.422 2.412 3.258 1.944 1026 chr19 39320771 39330528 + 0 NA Intergenic AluJb|SINE|Alu -3152 NM_001398 1891 Hs.196176 NM_001398 ENSG00000104823 ECH1 HPXEL enoyl-CoA hydratase 1 protein-coding 2.514 3.028 0.902 0.899 1.988 2.677 3.200 0.977 7.845 4.201 4.063 0.612 1.290 0.679 4.159 2.394 2.958 2.795 1.430 0.269 1.227 1.147 1.128 1.060 0.994 0.810 0.473 1.851 1.328 4.216 3.585 2.977 2.683 2.790 0.939 1.797 7.025 2.327 0.891 0.679 0.536 0.231 1692 chr6 85466854 85484965 + 0 NA Intergenic Intergenic -1955 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 1.488 0.485 2.359 0.648 1.500 1.169 0.192 0.035 0.722 0.457 0.072 0.137 0.079 0.006 0.053 0.028 1.591 0.675 0.023 0.019 0.012 0.448 0.531 2.192 0.033 0.026 0.034 0.065 3.315 3.164 0.167 0.007 1.337 0.015 0.474 0.221 1.657 0.009 0.034 0.019 0.008 36 chr1 27312789 27339434 + 0 NA intron (NM_001013642, intron 1 of 1) intron (NM_001013642, intron 1 of 1) 5916 NM_001013642 388610 Hs.355747 NM_001013642 ENSG00000253368 TRNP1 C1orf225|TNRP TMF1-regulated nuclear protein 1 protein-coding 3.658 0.738 0.841 0.370 0.703 1.694 1.061 1.749 0.635 0.229 0.810 0.274 0.542 0.841 0.351 1.069 1.133 0.464 1.254 0.081 1.039 0.806 0.466 0.152 3.574 0.531 0.342 1.004 0.543 2.908 1.091 0.827 0.547 1.383 0.534 0.165 0.506 2.223 0.674 0.450 1.036 0.493 1629 chr6 18257698 18265660 + 0 NA intron (NM_003472, intron 2 of 10) AluSp|SINE|Alu 3120 NM_003472 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 2.714 3.396 4.344 0.833 3.540 2.631 2.345 1.271 4.333 2.945 3.105 1.187 0.651 1.188 2.767 1.955 1.116 1.379 1.267 2.521 2.002 2.246 1.087 2.062 5.149 3.520 1.638 1.033 2.472 2.125 4.491 1.156 1.602 5.063 3.570 0.828 1.424 3.650 1.889 1.863 1.453 0.940 1602 chr5 172183913 172236278 + 0 NA Intergenic L1MB7|LINE|L1 -11892 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 1.521 1.110 0.446 0.679 1.152 0.981 2.053 1.261 3.064 1.096 0.702 0.801 0.899 1.883 0.939 1.611 0.476 1.174 0.294 0.173 2.431 1.592 0.536 1.314 1.318 0.883 0.530 0.658 1.490 1.800 1.509 2.120 2.376 2.384 2.446 1.101 1.670 0.698 0.859 0.491 1.206 0.901 1478 chr4 57588897 57631804 + 0 NA Intergenic MER119|DNA|hAT-Charlie -62478 NM_139212 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 0.319 0.424 0.067 0.376 0.696 0.022 1.370 0.935 3.311 0.944 2.121 0.637 0.891 1.004 0.538 1.095 0.025 0.801 0.104 0.025 0.933 0.653 0.033 0.078 0.200 0.138 0.095 0.670 0.551 0.091 0.046 0.103 0.354 0.799 2.883 0.157 0.067 0.131 0.295 0.223 0.032 0.018 1222 chr20 18231721 18237844 + 0 NA Intergenic L1MB3|LINE|L1 -34145 NM_001282997 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 0.788 0.494 2.376 0.497 1.038 0.052 1.056 1.626 2.518 1.834 6.172 3.580 0.444 1.747 2.334 3.460 1.195 0.245 0.026 3.423 2.907 0.024 0.044 0.105 0.613 0.414 4.691 0.491 0.386 0.116 0.026 0.868 2.547 1.597 1.260 0.391 0.047 2.244 2.084 0.565 0.491 908 chr17 74377468 74395864 + 0 NA 3' UTR (NM_022066, exon 18 of 18) 3' UTR (NM_022066, exon 18 of 18) 5377 NM_001142602 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 0.250 1.242 0.108 0.403 0.908 0.051 1.094 0.436 6.644 2.896 1.297 0.870 0.348 0.435 0.273 1.429 0.197 0.480 0.156 0.216 0.940 1.120 0.812 0.500 2.204 0.503 0.339 0.250 0.836 1.312 0.887 1.195 0.818 1.250 0.382 0.565 0.757 2.708 0.363 0.715 0.153 0.063 1733 chr7 12745025 12781423 + 0 NA Intergenic MIR|SINE|MIR 36313 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.406 0.459 0.639 0.288 0.523 0.045 0.498 0.334 4.144 1.623 0.785 0.818 0.681 0.431 0.241 0.717 0.132 1.625 0.066 4.376 1.381 0.749 0.056 1.380 0.468 0.071 0.052 0.150 1.009 1.064 0.366 0.071 0.499 0.419 0.699 0.570 0.169 0.079 0.797 0.405 0.024 0.009 887 chr17 56452252 56496731 + 0 NA intron (NM_017763, intron 2 of 9) intron (NM_017763, intron 2 of 9) 5591 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 0.073 0.085 1.180 0.268 0.779 2.509 0.734 0.528 7.318 3.113 1.617 0.678 0.248 1.042 0.228 1.021 0.228 0.868 0.113 0.019 0.586 0.251 0.035 0.321 0.151 0.098 0.044 0.450 0.270 1.193 0.063 1.859 0.898 0.509 1.042 1.095 0.157 0.182 0.889 0.436 1.038 0.886 533 chr13 74227372 74259644 + 0 NA Intergenic L2a|LINE|L2 105127 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.161 0.100 0.015 0.012 0.069 0.010 0.074 0.026 5.871 1.871 0.395 0.086 0.018 0.054 0.131 0.064 0.006 0.078 0.166 0.013 0.066 0.034 0.020 0.085 0.153 0.017 0.017 0.069 0.121 0.407 0.038 0.132 0.278 0.035 0.017 0.599 0.172 0.027 0.015 0.054 0.012 0.009 1422 chr3 168821978 168833952 + 0 NA intron (NM_004991, intron 9 of 16) intron (NM_004991, intron 9 of 16) 36128 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 4.879 0.409 0.671 0.799 1.499 0.103 2.044 3.551 0.154 0.127 1.435 2.116 1.321 1.980 0.213 2.880 0.008 2.302 0.042 0.517 0.157 0.018 0.178 0.207 0.677 0.456 1.150 2.570 0.022 0.857 0.070 0.013 0.668 2.763 0.286 0.020 0.027 1.805 1.234 0.597 0.586 1486 chr4 83315163 83329519 + 0 NA Intergenic Intergenic -27192 NM_001003810 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 0.386 0.211 0.008 0.951 2.125 0.035 1.270 1.557 4.277 2.462 1.034 0.615 0.148 1.217 0.625 2.849 0.092 0.465 0.056 0.023 0.300 0.160 0.047 0.041 0.772 0.092 0.038 1.419 0.480 0.062 0.850 0.547 0.480 2.506 0.033 0.230 0.259 0.414 0.128 0.037 0.008 1831 chr8 23074757 23088475 + 0 NA intron (NM_003844, intron 1 of 9) AluSc8|SINE|Alu 1064 NM_003844 8797 Hs.213467 NM_003844 ENSG00000104689 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 TNF receptor superfamily member 10a protein-coding 1.614 1.433 0.049 0.639 1.822 1.610 1.318 1.542 4.426 2.560 1.265 2.077 0.724 1.868 1.301 3.207 0.244 1.566 0.254 0.283 2.699 2.624 0.299 1.702 2.926 2.347 1.073 1.581 0.751 2.645 2.482 0.820 2.199 1.580 1.797 1.045 0.338 1.788 0.999 1.557 0.385 0.158 1716 chr6 143264613 143269604 + 0 NA promoter-TSS (NM_006734) promoter-TSS (NM_006734) -770 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 3.774 3.939 4.632 1.253 4.302 7.013 6.816 1.287 12.522 10.091 5.672 1.375 1.272 3.146 4.528 2.737 3.217 3.355 2.173 8.107 2.398 2.608 3.473 1.170 4.781 8.075 3.851 2.715 3.171 4.126 13.491 1.287 3.193 9.909 4.017 1.543 3.259 6.678 2.033 2.437 4.629 2.875 110 chr1 150458783 150461466 + 0 NA intron (NM_001271896, intron 1 of 13) intron (NM_001271896, intron 1 of 13) 284 NM_001271895 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 2.380 2.418 0.231 1.574 2.373 1.628 2.042 0.786 25.336 20.940 2.549 1.451 1.711 2.283 1.960 2.747 0.757 2.761 3.633 0.989 2.553 1.911 1.052 2.260 2.302 2.715 1.195 1.205 1.356 2.093 3.714 6.264 6.759 2.163 3.193 1.865 2.960 4.025 2.906 0.877 1.330 0.871 1258 chr20 48779220 48790318 + 0 NA Intergenic AluJb|SINE|Alu -4338 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 2.315 1.908 1.075 0.734 1.488 4.333 1.105 0.940 3.003 1.045 1.625 2.061 1.044 0.769 0.852 1.205 2.335 2.509 0.666 1.150 1.314 0.885 0.993 5.399 3.971 0.866 0.552 0.687 5.550 4.357 2.885 1.531 2.013 2.859 3.281 1.121 1.605 6.472 1.338 2.685 1.853 1.317 710 chr16 12038990 12045432 + 0 NA Intergenic L1MC5|LINE|L1 -16753 NM_001192 608 Hs.2556 NM_001192 ENSG00000048462 TNFRSF17 BCM|BCMA|CD269|TNFRSF13A TNF receptor superfamily member 17 protein-coding 0.109 0.221 8.700 0.128 0.132 0.059 0.062 0.066 0.378 0.124 0.112 0.023 0.036 0.034 0.197 0.231 0.197 0.119 0.077 0.015 0.194 0.090 0.125 0.116 0.152 0.059 0.048 0.071 0.124 0.177 0.077 0.085 0.175 0.100 0.122 0.038 0.051 0.081 0.171 0.057 0.018 0.008 1096 chr19 59065151 59072292 + 0 NA intron (NM_003969, intron 1 of 5) intron (NM_003969, intron 1 of 5) 1622 NM_003969 9040 Hs.406068 NM_003969 ENSG00000130725 UBE2M UBC-RS2|UBC12|hUbc12 ubiquitin conjugating enzyme E2 M protein-coding 4.981 6.999 1.996 1.274 3.418 5.572 4.105 1.404 7.248 4.617 4.989 1.410 1.962 1.461 0.504 2.316 2.713 3.940 2.683 2.491 1.493 2.193 3.658 3.785 7.768 4.194 1.869 2.419 2.516 6.572 3.698 4.226 2.868 4.537 3.404 2.564 4.327 5.839 5.087 2.420 2.840 1.655 633 chr15 53094789 53106802 + 0 NA Intergenic Intergenic -18586 NM_004498 3175 Hs.658573 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 0.060 0.065 0.083 0.143 0.052 3.137 0.199 0.635 0.166 0.350 0.061 0.069 0.679 0.056 0.060 0.016 0.038 0.025 0.236 0.105 0.024 0.060 0.080 0.015 0.039 0.045 0.143 0.123 0.053 0.039 0.055 0.070 0.018 0.075 0.094 0.101 0.061 0.006 0.010 0.013 511 chr12 125196512 125236409 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR 132059 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 0.633 0.170 0.062 0.500 0.751 0.334 0.095 0.335 3.696 1.099 0.452 0.761 0.134 0.251 0.811 0.945 0.640 0.712 0.090 0.073 1.195 0.719 0.144 1.302 0.547 0.200 0.134 0.376 0.591 1.224 0.508 0.241 0.767 1.336 0.121 0.705 0.507 0.933 0.420 0.621 0.175 0.113 1754 chr7 55010595 55016220 + 0 NA Intergenic Intergenic -73307 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 0.354 0.055 11.295 0.150 0.109 0.193 0.037 0.707 0.238 4.482 0.155 0.059 1.049 0.280 3.274 0.181 0.102 0.355 0.218 0.039 0.029 0.018 0.021 0.233 0.126 0.043 0.052 0.056 0.911 0.147 0.167 0.174 3.186 0.061 0.098 0.119 0.031 1054 chr19 45902771 45913800 + 0 NA promoter-TSS (NM_006663) promoter-TSS (NM_006663) 27 NM_006663 10848 Hs.466937 NM_006663 ENSG00000104881 PPP1R13L IASPP|NKIP1|RAI|RAI4 protein phosphatase 1 regulatory subunit 13 like protein-coding 5.043 3.867 1.192 1.819 4.098 4.916 3.108 1.914 nan 3.340 3.422 2.182 1.550 3.843 3.292 4.713 3.398 2.478 0.877 1.141 2.146 2.587 1.319 1.471 8.101 5.248 1.987 1.603 2.210 3.418 6.934 1.810 2.136 4.891 1.580 2.703 3.078 3.014 0.972 2.656 3.551 2.586 149 chr1 154697958 154704608 + 0 NA intron (NM_002249, intron 4 of 7) intron (NM_002249, intron 4 of 7) -100827 NM_001025107 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 0.087 0.207 0.313 0.238 0.265 0.071 0.302 3.450 0.993 0.352 0.373 1.263 0.914 0.264 2.071 4.350 0.458 0.041 6.506 7.063 0.066 13.938 0.434 0.971 0.316 0.322 0.288 0.629 0.043 1.447 5.360 0.224 0.125 3.733 0.348 0.512 0.425 0.734 0.009 0.022 1109 chr2 19318845 19331438 + 0 NA Intergenic Intergenic -98415 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 0.355 0.169 0.034 0.152 0.248 0.184 0.178 0.867 1.671 0.362 0.278 0.662 2.312 0.354 0.558 2.215 0.122 1.717 0.075 0.011 0.163 0.143 0.012 0.213 0.574 0.086 0.074 0.164 1.488 0.213 0.114 0.243 0.578 0.286 0.854 0.490 0.305 0.112 0.263 0.840 0.155 0.145 1991 chr9 140499096 140514813 + 0 NA intron (NM_152285, intron 1 of 7) intron (NM_152285, intron 1 of 7) 6027 NR_122036 85026 Hs.522520 NM_032937 ENSG00000203993 ARRDC1-AS1 C9orf37 ARRDC1 antisense RNA 1 ncRNA 2.843 2.480 2.052 2.364 6.500 0.600 6.622 1.550 8.879 5.251 3.159 2.050 0.718 2.218 3.833 3.267 2.818 0.577 0.554 0.361 2.641 3.222 1.443 1.385 5.005 3.434 1.707 2.960 0.969 2.530 3.279 1.187 3.266 7.877 1.931 1.592 7.877 1.971 1.973 1.320 1.221 0.815 9 chr1 6658842 6675877 + 0 NA Intergenic AluSx1|SINE|Alu -4401 NM_014851 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 4.283 2.543 1.663 0.734 2.601 0.916 3.169 1.033 nan 1.445 1.132 0.849 0.639 1.535 1.222 1.749 1.153 2.042 0.678 2.525 1.869 2.067 1.988 1.511 2.279 2.509 1.149 0.456 4.148 1.988 4.324 1.362 1.303 3.663 1.956 0.960 0.841 4.166 0.886 1.543 0.984 0.733 1680 chr6 43137297 43143460 + 0 NA intron (NM_001292001, intron 1 of 6) intron (NM_001292001, intron 1 of 6) 250 NM_001292001 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 3.582 3.166 0.667 0.739 3.857 2.228 2.086 0.839 2.928 2.405 3.463 0.804 0.752 1.557 2.026 3.015 0.526 1.869 1.311 1.878 2.380 2.402 1.446 1.151 3.720 3.297 1.551 1.283 5.083 1.942 4.755 1.812 1.450 10.848 3.330 0.636 1.301 6.075 2.429 1.315 1.598 1.018 671 chr15 93442563 93474255 + 0 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 10780 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA 2.369 1.917 1.330 0.998 2.268 2.130 2.712 1.166 3.261 2.649 1.728 1.173 0.593 2.172 2.909 1.714 0.945 1.775 0.797 1.216 1.771 1.301 0.481 2.017 1.531 0.836 0.433 0.811 1.602 2.158 1.077 1.235 3.074 1.653 3.254 1.784 2.452 0.763 1.384 1.789 0.661 0.599 1060 chr19 46267137 46276607 + 0 NA exon (NM_175875, exon 1 of 3) exon (NM_175875, exon 1 of 3) 625 NM_175875 147912 Hs.43314 NM_175875 ENSG00000177045 SIX5 BOR2|DMAHP SIX homeobox 5 protein-coding 1.621 5.033 0.210 0.843 2.799 2.956 1.735 0.578 nan 2.059 2.959 0.700 1.438 0.853 1.959 0.893 1.290 1.502 1.187 2.037 0.877 1.153 3.359 1.301 7.014 2.047 0.911 0.549 1.700 5.656 10.386 2.747 1.580 2.573 1.100 0.982 1.690 6.567 1.478 1.175 1.059 0.553 1210 chr20 379770 397787 + 0 NA promoter-TSS (NM_001323960) promoter-TSS (NM_001323960) 84 NM_001323956 10616 Hs.29546 NM_006462 ENSG00000125826 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RANBP2-type and C3HC4-type zinc finger containing 1 protein-coding 1.756 2.283 0.241 0.377 1.064 1.045 0.648 1.011 5.806 4.131 1.202 0.706 0.576 1.513 1.231 0.729 0.662 1.119 1.573 0.685 1.642 1.620 0.890 1.397 1.166 1.767 0.709 1.348 1.112 3.224 1.770 3.072 3.259 1.060 0.632 1.440 1.020 1.290 1.188 0.708 1.822 1.072 1089 chr19 56151219 56156426 + 0 NA 5' UTR (NM_016202, exon 1 of 1) 5' UTR (NM_016202, exon 1 of 1) 359 NM_001163423 51157 Hs.631551 NM_016202 ENSG00000213015 ZNF580 - zinc finger protein 580 protein-coding 5.468 7.807 1.959 1.358 3.935 6.349 6.718 1.541 9.526 7.056 6.260 1.851 3.217 5.432 6.755 2.665 2.457 4.679 3.939 1.906 1.697 1.888 5.892 4.028 6.886 4.646 2.229 2.150 2.062 6.648 6.066 4.660 2.544 2.357 4.224 3.339 3.046 9.007 5.421 3.176 2.203 1.015 292 chr11 3114643 3118707 + 0 NA intron (NM_145638, intron 13 of 20) L1MC5|LINE|L1 -37994 NM_001751 833 Hs.274873 NM_001751 ENSG00000110619 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 0.106 1.615 0.015 0.769 0.886 0.077 0.085 0.918 0.229 0.079 0.120 0.071 0.958 0.456 0.190 1.824 0.745 0.103 0.379 0.215 0.074 0.057 4.185 9.701 3.397 0.093 2.620 0.100 0.245 0.096 0.099 0.159 0.160 0.031 0.062 5.634 0.272 0.958 0.099 0.076 85 chr1 87791919 87803010 + 0 NA intron (NM_006769, intron 1 of 4) CpG 3313 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 5.448 2.458 4.518 1.092 3.025 0.114 2.172 0.686 5.686 3.252 1.970 1.103 0.660 1.113 3.107 2.852 1.456 1.935 1.094 1.936 1.811 1.545 1.054 1.259 2.768 1.828 1.095 2.183 3.577 1.767 3.374 1.278 2.322 3.962 1.995 1.041 0.766 3.047 1.292 1.386 1.096 0.718 785 chr17 4845492 4857439 + 0 NA intron (NM_005022, intron 1 of 2) CpG 916 NM_005022 5216 Hs.494691 NM_005022 ENSG00000108518 PFN1 ALS18 profilin 1 protein-coding 2.702 3.681 1.940 1.002 3.043 7.455 3.267 0.996 6.336 4.337 3.708 1.519 1.496 2.186 2.657 2.656 2.004 3.482 2.931 1.740 1.033 1.747 2.023 5.260 17.413 4.960 1.862 3.029 5.343 8.787 4.450 2.243 2.377 3.946 6.933 2.535 1.975 10.644 3.950 3.363 4.184 2.641 269 chr10 112214377 112221847 + 0 NA Intergenic Intergenic -39513 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 0.222 0.697 0.059 0.133 0.460 0.641 0.309 0.813 2.539 0.807 0.721 0.358 0.286 0.377 3.411 2.258 0.245 0.622 0.902 0.019 0.911 0.550 0.267 0.350 1.384 0.241 0.219 0.216 0.162 2.261 0.402 4.556 2.146 0.445 0.393 0.395 0.332 0.214 1.752 0.275 0.046 0.016 1611 chr6 326935 347081 + 0 NA intron (NR_104474, intron 3 of 5) intron (NR_104474, intron 3 of 5) 44951 NM_001286555 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 0.071 0.158 0.031 0.038 0.245 0.028 0.077 0.021 0.300 0.172 0.199 0.044 0.065 0.048 0.133 0.145 0.014 0.202 0.055 0.036 0.299 0.126 0.074 10.778 0.237 0.075 0.047 0.076 0.287 0.075 0.187 0.035 0.152 0.113 0.097 0.109 0.082 0.116 0.133 0.087 0.009 0.013 359 chr11 72516436 72526927 + 0 NA Intergenic L2a|LINE|L2 -3770 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 1.546 3.028 0.893 0.666 1.460 1.763 1.328 1.301 nan 2.100 1.713 1.070 0.885 1.950 3.578 2.265 0.392 1.240 0.934 0.805 3.036 3.236 1.278 3.609 5.139 2.290 1.127 1.131 2.520 3.488 2.381 1.574 5.852 2.847 2.752 1.061 1.562 4.466 1.241 2.230 1.016 0.666 107 chr1 146693237 146716282 + 0 NA Intergenic SVA_D|Other|Other -7529 NM_001144829 2330 Hs.642706 NM_001461 ENSG00000131781 FMO5 - flavin containing monooxygenase 5 protein-coding 0.450 0.512 0.261 0.583 0.929 0.389 0.398 0.626 16.100 6.459 1.268 0.747 0.886 0.805 0.512 2.454 0.150 0.515 1.417 0.376 2.338 1.544 0.317 0.612 0.436 0.534 0.326 1.429 0.372 1.208 0.435 0.509 1.881 1.561 0.551 0.542 0.853 0.924 0.760 0.185 0.310 0.201 408 chr12 10329400 10347214 + 0 NA intron (NM_153022, intron 2 of 3) AluSx|SINE|Alu 6750 NM_153022 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 0.096 0.132 0.223 0.096 0.099 0.117 0.099 0.012 0.233 0.073 0.234 0.024 0.013 0.048 0.768 0.103 0.426 0.114 0.066 0.047 0.077 0.036 0.871 0.082 2.245 0.105 0.061 0.087 0.264 0.315 0.104 0.044 0.182 0.060 0.036 0.048 0.465 4.412 0.027 0.026 0.145 0.054 615 chr14 103556055 103612481 + 0 NA Intergenic MER50|LTR|ERV1 4978 NR_138038 105370683 Hs.252904 NR_138038 LINC00677 C14orf74 long intergenic non-protein coding RNA 677 ncRNA 0.317 1.724 0.047 0.617 1.406 0.177 0.853 0.723 5.542 2.914 0.751 1.502 0.483 1.230 4.931 1.199 0.807 0.618 0.225 0.095 1.816 1.585 0.195 3.067 1.644 0.613 0.367 0.592 0.176 4.031 0.541 0.172 2.939 0.836 0.349 0.593 0.770 0.403 1.397 0.874 0.053 0.029 462 chr12 58253691 58261352 + 0 NA Intergenic Intergenic -16774 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 1.523 1.081 0.973 0.587 1.456 2.747 2.570 0.797 3.941 1.761 2.395 0.594 0.753 1.134 1.348 1.197 0.651 2.529 0.080 0.887 1.556 1.480 1.749 1.268 2.358 1.772 0.800 0.888 2.818 2.370 3.270 1.307 2.115 1.699 13.167 1.069 1.315 3.322 1.221 0.572 1.015 0.756 1038 chr19 41854386 41860889 + 0 NA intron (NM_000660, intron 1 of 6) intron (NM_000660, intron 1 of 6) 2151 NM_000660 7040 Hs.645227 NM_000660 ENSG00000105329 TGFB1 CED|DPD1|LAP|TGFB|TGFbeta transforming growth factor beta 1 protein-coding 3.234 4.293 0.085 0.498 1.266 1.008 1.368 0.551 nan 1.886 2.260 0.606 1.685 1.304 1.143 1.277 0.456 3.750 0.480 1.792 1.507 1.865 3.836 1.381 3.076 3.198 1.309 0.200 0.769 5.079 10.217 0.387 0.282 0.971 0.967 0.252 0.280 5.029 0.343 1.726 1.328 0.678 1336 chr22 37579839 37597326 + 0 NA Intergenic MER41-int|LTR|ERV1 -4252 NM_031910 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and tumor necrosis factor related protein 6 protein-coding 1.864 1.217 2.063 1.368 3.604 5.440 1.411 1.486 4.925 3.404 3.607 2.133 0.837 0.812 7.427 2.821 2.682 0.458 0.342 0.186 0.813 0.840 0.237 1.956 2.128 2.668 1.099 1.643 0.895 3.311 1.588 2.364 5.448 3.321 2.464 2.450 9.322 4.291 3.593 1.684 0.893 0.743 784 chr17 4605425 4615322 + 0 NA Intergenic AluY|SINE|Alu -2741 NM_014389 27043 Hs.744899 NM_014389 ENSG00000141456 PELP1 MNAR|P160 proline, glutamate and leucine rich protein 1 protein-coding 1.161 1.285 0.531 0.822 2.173 1.440 1.672 0.404 3.514 1.867 1.103 0.740 0.545 1.182 1.575 1.013 0.870 1.369 1.300 0.742 0.580 0.517 1.011 2.600 2.606 1.481 0.812 1.086 1.111 3.158 2.206 0.908 1.079 3.017 4.873 0.922 1.106 3.423 2.370 0.468 0.975 0.635 230 chr10 3892197 3904681 + 0 NA Intergenic AluJr|SINE|Alu 22297 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 0.995 0.537 0.269 0.719 0.851 1.532 1.131 1.186 0.569 0.187 0.829 0.519 0.694 1.515 0.446 1.263 0.076 1.430 0.113 0.023 1.037 0.666 0.235 0.705 0.446 0.622 0.406 0.313 0.829 0.553 0.665 2.782 0.604 1.553 2.042 0.411 0.646 3.658 1.727 0.535 2.883 3.150 236 chr10 25006977 25014658 + 0 NA exon (NM_020824, exon 2 of 26) exon (NM_020824, exon 2 of 26) 1780 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 3.936 5.896 2.058 1.060 3.730 2.774 5.226 1.388 1.960 1.432 1.584 0.573 1.638 2.010 2.587 2.303 1.717 3.027 0.302 1.935 2.143 2.940 2.342 2.353 1.855 3.236 1.632 2.111 2.287 5.847 3.335 4.199 5.678 3.391 2.441 2.714 2.026 3.758 2.584 2.287 2.526 1.321 593 chr14 68808553 68868761 + 0 NA intron (NM_001321809, intron 8 of 11) L2|LINE|L2 256847 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.424 0.209 0.054 0.183 0.109 0.106 0.307 0.295 3.418 0.841 2.778 0.269 1.165 0.236 0.698 0.380 0.142 1.129 0.127 0.180 1.779 0.956 0.039 0.102 0.096 0.053 0.053 0.150 0.266 0.261 0.173 0.050 0.304 0.080 0.359 0.074 0.181 0.153 0.466 0.248 0.029 0.017 951 chr18 46356862 46370788 + 0 NA intron (NM_014772, intron 10 of 11) intron (NM_014772, intron 10 of 11) 105352 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 0.604 2.017 0.009 0.762 1.163 1.264 0.368 1.129 4.363 1.435 1.772 1.314 2.317 2.314 1.884 3.918 0.420 2.325 0.151 0.040 1.668 1.559 0.138 0.127 1.645 2.795 1.226 0.583 3.553 0.398 1.909 0.057 1.840 1.205 1.381 0.501 0.107 1.294 1.037 3.859 0.546 0.398 44 chr1 33279072 33285712 + 0 NA promoter-TSS (NM_022753) promoter-TSS (NM_022753) -651 NM_001256121 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 5.656 4.496 1.718 1.463 4.449 3.847 4.682 1.574 10.995 6.648 4.095 2.624 1.658 2.541 3.507 3.241 2.004 3.808 2.099 5.113 2.170 2.578 2.519 3.663 6.296 3.662 1.894 1.803 4.546 2.909 5.247 2.137 2.112 4.144 7.329 1.679 1.272 5.577 2.510 2.200 3.304 2.022 1569 chr5 126110644 126116265 + 0 NA exon (NM_005573, exon 1 of 11) exon (NM_005573, exon 1 of 11) 609 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 5.907 5.426 2.628 1.755 4.747 5.750 4.851 1.766 8.554 3.805 3.622 2.414 1.771 4.312 3.282 5.124 2.086 2.547 1.487 2.631 4.221 5.283 2.748 6.884 7.339 6.844 2.877 2.238 5.532 6.031 5.612 4.460 3.530 6.149 6.947 2.532 1.375 6.859 3.865 4.553 5.947 3.949 1343 chr22 38612440 38640645 + 0 NA intron (NM_012264, intron 5 of 8) intron (NM_012264, intron 5 of 8) -5815 NR_132774 106635525 NR_132774 SNORA92 - small nucleolar RNA, H/ACA box 92 snoRNA 2.148 2.415 0.539 0.813 1.691 1.524 1.674 1.415 5.414 2.357 1.134 0.430 0.792 1.245 2.372 2.346 0.524 1.469 0.315 0.096 0.975 0.778 0.568 0.330 1.331 1.734 0.631 0.897 1.199 1.336 0.845 0.133 2.017 3.283 1.142 0.981 3.229 1.195 1.010 1.416 0.469 0.269 432 chr12 31223578 31235333 + 0 NA intron (NM_152438, intron 1 of 26) MIRb|SINE|MIR -2674 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 2.074 2.601 1.828 2.311 4.905 0.874 3.254 1.719 4.573 2.389 3.409 1.752 2.328 1.410 2.159 2.706 0.818 1.818 0.676 1.310 2.299 2.647 0.480 1.294 3.267 2.673 1.199 2.425 3.759 1.475 3.719 1.471 2.287 6.556 3.463 0.997 0.719 2.392 1.471 7.247 1.607 1.311 445 chr12 53885295 53899551 + 0 NA intron (NM_006301, intron 1 of 14) intron (NM_006301, intron 1 of 14) 1021 NM_006301 7786 Hs.713539 NM_006301 ENSG00000139625 MAP3K12 DLK|MEKK12|MUK|ZPK|ZPKP1 mitogen-activated protein kinase kinase kinase 12 protein-coding 0.908 2.808 1.390 0.413 1.150 3.275 1.080 0.614 3.991 2.060 1.343 0.737 1.022 0.866 1.935 1.265 0.951 3.155 1.105 1.896 1.698 1.640 2.506 1.931 2.428 1.425 0.671 0.753 2.505 3.574 3.652 1.590 1.547 1.393 1.518 0.857 1.691 3.319 1.977 1.163 1.135 0.717 191 chr1 182137374 182219581 + 0 NA intron (NR_104175, intron 2 of 2) MIRb|SINE|MIR 104719 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 0.101 0.072 0.037 0.032 0.145 0.073 0.282 0.038 4.487 0.805 1.014 0.539 0.089 0.482 0.536 0.095 0.131 0.116 0.054 0.024 0.572 0.230 0.021 0.135 0.114 0.020 0.021 0.149 0.130 0.179 0.029 0.156 0.607 0.205 0.334 0.251 0.845 0.063 0.052 0.076 0.041 0.018 843 chr17 38293963 38298373 + 0 NA promoter-TSS (NM_007359) promoter-TSS (NM_007359) -339 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 cancer susceptibility candidate 3 protein-coding 17.701 4.085 7.027 1.029 3.343 3.729 2.201 0.839 2.911 1.705 2.201 1.063 1.831 1.800 1.775 2.422 0.805 1.122 0.998 1.769 2.116 1.996 1.921 3.699 3.527 2.081 0.917 0.838 2.422 4.366 2.719 2.487 1.650 4.557 2.249 1.582 2.235 3.834 1.987 1.646 1.972 1.701 142 chr1 153889304 153904671 + 0 NA Intergenic Intergenic -1536 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding 1.032 1.310 0.423 0.395 1.310 0.973 0.970 0.561 10.396 7.012 0.926 0.722 0.791 0.926 1.078 1.095 0.499 1.302 0.880 0.822 0.847 0.760 0.673 1.207 1.638 1.076 0.609 0.501 0.991 1.017 1.330 2.777 2.864 1.168 1.014 0.552 0.841 3.220 1.319 0.912 0.558 0.311 1749 chr7 30632873 30638043 + 0 NA intron (NM_002047, intron 1 of 16) intron (NM_002047, intron 1 of 16) 949 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 7.078 3.405 1.467 1.056 3.446 1.598 8.404 2.079 13.811 11.973 8.030 1.469 1.884 2.928 6.191 2.845 3.049 3.317 2.693 5.626 3.592 3.046 1.597 3.702 3.525 2.670 1.617 2.460 5.318 3.507 4.193 3.356 3.204 3.810 5.889 3.140 1.681 3.781 3.785 2.481 2.785 1.590 1559 chr5 71795774 71812025 + 0 NA promoter-TSS (NM_152625) promoter-TSS (NM_152625) -650 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 0.128 0.714 0.019 0.706 0.578 0.024 0.537 1.491 1.742 0.388 0.335 1.016 1.725 0.608 1.149 2.051 0.059 4.092 0.024 0.008 3.545 1.952 0.073 0.321 0.114 0.171 0.096 0.149 0.264 0.165 0.031 0.058 0.321 0.440 0.216 0.150 0.118 0.039 0.618 0.715 0.020 0.022 639 chr15 66990900 67002022 + 0 NA intron (NR_027654, intron 1 of 4) CpG-8006 1787 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 2.144 2.455 1.794 0.471 1.806 4.956 1.393 0.645 2.573 0.904 1.733 0.988 0.564 0.867 1.030 1.212 1.351 1.888 0.198 4.178 1.185 1.075 2.427 2.765 2.722 0.418 0.312 0.462 1.512 7.127 2.335 2.879 4.636 2.090 0.837 1.399 1.929 3.912 0.869 1.089 0.430 0.284 708 chr16 11920047 11935415 + 0 NA TTS (NM_015659) TTS (NM_015659) -5042 NR_131217 400500 Hs.24611 NR_024049 ENSG00000262117 BCAR4 - breast cancer anti-estrogen resistance 4 (non-protein coding) ncRNA 0.122 0.218 5.153 0.025 0.186 0.354 0.083 0.007 0.340 0.126 0.107 0.038 0.053 0.029 0.192 0.245 0.256 0.456 0.039 0.027 0.169 0.071 0.101 0.153 0.251 0.067 0.041 0.035 0.097 0.185 0.148 0.072 0.152 0.175 0.114 0.095 0.043 0.178 0.113 0.095 0.022 0.017 1012 chr19 36206658 36211184 + 0 NA promoter-TSS (NM_014727) promoter-TSS (NM_014727) 0 NM_014727 9757 Hs.92236 NM_014727 ENSG00000272333 KMT2B CXXC10|HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7 lysine methyltransferase 2B protein-coding 6.242 5.329 1.259 1.537 4.548 4.106 4.442 1.047 6.486 4.539 4.255 1.243 1.299 2.549 3.251 1.734 2.570 3.200 2.540 1.350 2.586 3.130 6.121 5.094 5.110 5.638 2.682 1.236 2.274 11.110 11.878 5.366 3.539 4.736 3.859 3.686 3.224 7.780 2.265 1.210 1.285 0.720 1385 chr3 57111367 57118942 + 0 NA Intergenic Intergenic -1818 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 1.177 0.990 0.124 1.190 2.358 0.116 6.191 5.363 1.858 0.979 0.678 0.620 0.325 1.944 3.291 4.235 0.951 0.989 0.014 0.146 1.430 1.097 0.507 0.365 0.572 0.957 0.526 2.220 0.342 1.182 1.367 0.553 1.443 3.833 0.466 0.964 0.501 1.581 1.193 0.291 0.487 0.282 295 chr11 8702677 8711527 + 0 NA TTS (NR_002977) TTS (NR_002977) 116 NR_002977 677826 Hs.745552 NR_002977 ENSG00000212607 SNORA3B ACA3-2|SNORA45|SNORA45B small nucleolar RNA, H/ACA box 3B snoRNA 3.239 4.331 1.543 1.199 2.891 2.902 2.564 2.331 7.290 5.983 4.803 1.372 1.603 3.120 3.660 4.450 0.940 2.398 2.526 1.704 2.117 2.424 2.022 4.649 6.043 7.580 3.194 1.723 3.182 3.301 3.151 3.101 2.464 3.644 6.338 2.070 1.864 3.955 4.062 2.455 2.375 1.999 1961 chr9 113672787 113690304 + 0 NA intron (NM_057159, intron 4 of 4) MLT1E1|LTR|ERVL-MaLR 118820 NM_057159 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 0.169 0.595 0.014 0.145 0.552 0.404 0.791 0.513 nan 1.419 1.773 0.929 0.154 1.187 0.720 2.728 0.072 1.353 0.035 0.379 2.380 1.809 0.219 1.498 0.237 0.234 0.129 0.110 0.649 1.753 0.131 0.193 3.217 0.138 0.047 1.837 0.151 0.071 0.355 0.874 0.033 0.011 298 chr11 10607654 10620152 + 0 NA intron (NM_001100163, intron 17 of 20) intron (NM_001100163, intron 17 of 20) -23538 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 1.592 0.170 0.124 0.960 1.609 0.020 0.856 2.302 2.114 0.734 5.485 0.748 0.047 3.445 1.295 0.779 0.747 0.126 0.024 0.629 0.197 0.035 0.055 0.413 0.050 0.081 0.691 0.919 0.101 0.028 0.021 0.945 1.560 0.030 0.603 0.946 0.033 0.220 0.061 0.014 0.011 536 chr13 98864886 98869884 + 0 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 6607 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 0.428 0.476 0.471 3.697 5.959 0.031 1.297 1.225 13.620 5.283 2.312 1.908 0.698 1.329 4.220 2.276 0.288 0.036 0.081 0.757 0.490 0.044 0.108 0.406 0.097 0.031 0.665 0.343 0.195 0.197 0.267 0.588 3.769 0.369 0.559 0.364 0.067 0.047 0.556 0.440 0.525 1937 chr9 37461994 37474566 + 0 NA Intergenic MER51A|LTR|ERV1 -2873 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 0.784 3.589 1.499 0.996 2.670 2.954 2.238 0.832 3.430 2.420 4.105 1.375 1.353 1.902 1.930 3.083 1.513 1.876 0.444 1.146 2.944 3.239 2.557 3.590 6.088 5.381 2.012 2.816 3.852 4.212 5.062 1.575 2.104 3.676 2.073 0.798 1.242 9.832 2.962 1.992 5.077 4.509 1186 chr2 216916371 216947854 + 0 NA intron (NM_018441, intron 1 of 7) L1MEc|LINE|L1 14427 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 0.790 0.354 0.029 0.078 0.303 5.845 0.309 0.291 0.474 0.243 0.480 0.103 0.120 0.616 0.333 0.284 0.097 0.159 0.085 0.101 0.403 0.208 0.140 0.180 0.135 0.114 0.092 0.511 0.143 1.251 0.353 0.732 0.148 0.107 0.217 0.100 0.058 0.239 0.057 0.125 0.203 0.089 1924 chr8 146011376 146026527 + 0 NA Intergenic Intergenic -1120 NM_000973 6132 Hs.178551 NM_000973 ENSG00000161016 RPL8 L8 ribosomal protein L8 protein-coding 3.365 3.360 2.678 1.309 2.939 2.384 3.751 2.362 7.017 4.878 3.292 1.740 1.135 2.419 4.511 4.383 1.725 1.402 1.816 1.928 2.962 2.977 1.399 1.757 3.327 3.189 1.827 1.740 2.272 4.710 4.499 1.750 2.191 6.264 2.104 1.118 2.350 5.052 1.606 0.953 1.296 0.904 1298 chr21 36506513 36524844 + 0 NA Intergenic L1ME4a|LINE|L1 -94083 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 5.060 0.078 0.075 0.309 0.593 0.114 0.921 2.058 0.459 0.225 0.665 1.874 0.983 0.417 1.937 2.482 0.410 1.293 0.028 0.015 0.419 0.241 0.061 0.053 0.714 0.210 0.154 0.527 0.316 0.133 0.946 0.052 0.508 0.416 0.407 0.454 0.334 0.070 0.577 1.222 1.307 1.157 1126 chr2 43444511 43456939 + 0 NA 3' UTR (NM_006887, exon 2 of 2) 3' UTR (NM_006887, exon 2 of 2) 3020 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 8.279 4.770 1.291 1.750 6.024 4.402 6.174 2.000 nan 4.338 3.774 2.177 2.775 3.160 9.385 5.404 2.181 1.664 1.437 3.291 4.111 5.333 1.841 4.441 7.181 3.749 1.500 4.060 11.438 8.001 5.629 5.674 4.601 6.116 6.456 2.850 2.503 11.753 3.956 4.029 2.929 2.101 272 chr10 114707999 114725250 + 0 NA intron (NM_001198530, intron 3 of 10) intron (NM_001198530, intron 3 of 10) 6615 NM_001198526 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 2.357 4.829 2.770 0.824 2.226 3.194 2.395 1.297 1.952 0.823 1.659 0.390 1.141 1.756 1.226 3.070 1.671 2.861 0.986 1.930 1.340 1.498 1.598 2.251 2.844 2.394 1.088 1.949 1.352 3.918 2.164 1.046 1.695 1.857 3.266 1.818 0.680 1.618 2.079 1.808 0.929 0.635 729 chr16 51181722 51187888 + 0 NA promoter-TSS (NM_001127892) promoter-TSS (NM_001127892) -297 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 0.035 0.112 0.222 0.085 1.987 0.077 0.442 0.551 0.022 0.024 1.229 0.032 0.023 3.185 0.045 0.450 0.344 0.036 2.371 0.075 0.049 0.025 0.012 0.161 1.017 0.023 4.761 0.011 0.069 0.020 0.040 3.853 0.025 0.019 0.016 1938 chr9 37937217 37970792 + 0 NA intron (NM_003028, intron 4 of 5) intron (NM_003028, intron 4 of 5) -49654 NR_024872 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 0.879 1.029 0.261 1.274 2.085 0.941 0.938 0.494 3.621 1.303 0.699 1.269 1.028 1.066 0.603 2.624 0.598 1.018 0.340 0.033 1.074 0.609 0.394 0.156 2.316 0.742 0.381 1.006 0.680 0.974 1.428 0.621 2.009 1.809 0.488 0.594 0.415 2.304 0.802 2.169 1.079 0.715 837 chr17 37769636 37776725 + 0 NA Intergenic MIRb|SINE|MIR -9005 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 NDRF|bHLHa1 neuronal differentiation 2 protein-coding 19.462 1.326 0.447 0.347 1.193 0.700 1.036 0.402 1.591 0.633 1.190 0.310 0.400 0.523 0.613 0.764 0.432 0.428 0.565 0.314 0.633 0.328 0.833 0.847 0.856 0.860 0.405 0.220 1.546 2.219 0.876 1.678 1.056 1.607 0.877 0.530 0.645 3.095 0.665 0.569 0.309 0.187 1805 chr7 101762810 101780776 + 0 NA intron (NM_181500, intron 8 of 22) intron (NM_181500, intron 8 of 22) -156560 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 0.136 0.835 1.070 0.530 0.821 3.418 1.097 0.410 0.671 0.393 0.980 0.358 0.492 0.797 0.393 1.398 0.081 0.622 0.200 0.062 0.570 0.335 1.246 5.701 1.602 0.422 0.228 0.432 1.305 4.367 0.405 1.353 1.856 1.067 0.971 0.575 0.890 1.387 0.984 0.167 0.340 0.280 128 chr1 151428068 151442222 + 0 NA Intergenic Intergenic -3204 NM_015100 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element with ZNF domain protein-coding 1.151 1.340 0.621 0.482 1.109 2.054 0.990 0.521 9.793 4.411 0.828 0.434 0.828 0.663 0.756 1.290 0.796 0.918 0.747 1.029 1.147 1.197 1.104 1.882 2.171 1.210 0.606 0.352 1.421 1.692 1.517 2.758 2.185 1.784 1.030 0.588 1.101 2.576 1.213 0.736 0.831 0.500 74 chr1 62900666 62904374 + 0 NA 5' UTR (NM_003368, exon 1 of 9) 5' UTR (NM_003368, exon 1 of 9) 137 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 8.253 6.373 3.481 3.267 9.061 6.254 7.743 2.525 12.279 6.994 5.264 3.087 2.502 4.283 6.242 5.845 3.228 3.845 4.633 5.939 4.439 5.576 4.704 8.368 12.347 6.444 2.566 6.406 7.532 4.807 6.303 3.018 3.628 11.835 7.341 2.502 6.639 8.957 4.465 4.045 5.833 4.448 1242 chr20 39628739 39659686 + 0 NA intron (NM_001318196, intron 2 of 2) AluSx|SINE|Alu -13246 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 2.508 1.785 0.413 1.386 2.891 0.897 1.617 2.461 nan 3.628 2.456 1.724 2.633 2.421 1.857 2.597 1.163 1.852 0.502 0.478 1.025 0.974 0.458 1.647 3.999 1.778 0.917 1.748 2.829 1.205 2.951 1.567 2.139 3.488 3.761 1.354 1.781 1.396 1.732 2.429 0.569 0.527 1855 chr8 60150740 60191053 + 0 NA Intergenic L1PA6|LINE|L1 -139129 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 0.089 0.083 0.009 0.193 0.451 0.022 0.290 0.318 3.657 1.096 2.404 0.908 0.256 0.239 0.116 0.387 0.036 0.135 0.057 0.007 0.110 0.068 0.006 0.047 0.071 0.074 0.058 0.977 0.104 0.032 0.083 0.035 0.048 0.161 0.016 0.333 0.033 0.029 0.022 0.021 0.014 0.014 116 chr1 150937753 150962085 + 0 NA Intergenic Intergenic -2440 NM_181746 29956 Hs.744017 NM_013384 ENSG00000143418 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 2.021 1.850 0.092 0.858 2.076 2.196 0.798 1.151 19.549 13.109 2.490 1.310 1.808 1.533 1.663 2.927 0.550 1.153 1.084 0.927 2.126 2.020 1.277 2.458 2.945 2.397 1.232 0.812 1.246 2.909 3.470 9.675 4.815 1.993 2.567 1.423 1.629 4.258 2.174 0.749 0.933 0.779 640 chr15 67049595 67072921 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 66584 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 1.179 1.345 0.524 0.604 1.196 3.268 0.567 0.773 1.087 0.270 1.512 0.855 0.471 0.852 0.417 1.868 0.976 2.208 0.042 0.232 1.433 0.983 0.511 0.213 1.061 0.168 0.124 0.912 0.696 3.429 0.536 2.142 2.703 1.677 0.219 0.929 0.670 0.286 0.829 0.658 0.164 0.147 108 chr1 149898414 149915040 + 0 NA intron (NM_001145862, intron 5 of 16) intron (NM_001145862, intron 5 of 16) 1539 NM_181873 10903 Hs.425144 NM_006697 ENSG00000014914 MTMR11 CRA myotubularin related protein 11 protein-coding 2.339 1.939 1.252 1.571 3.008 3.062 2.350 1.344 11.797 6.803 2.347 2.075 2.260 2.069 1.989 3.868 1.411 1.961 1.087 0.634 2.561 2.282 1.237 3.844 2.267 1.790 0.772 1.715 2.029 2.937 2.131 5.223 5.355 2.970 3.499 1.499 2.769 3.819 2.609 1.314 1.500 0.937 1355 chr22 50462708 50469749 + 0 NA Intergenic Intergenic -15173 NM_001001694 400935 Hs.526712 NM_001001694 ENSG00000188263 IL17REL - interleukin 17 receptor E like protein-coding 0.477 0.508 0.026 0.081 0.332 0.027 0.520 0.105 1.001 0.294 0.895 0.228 0.100 0.093 0.122 0.381 0.054 0.014 0.061 0.145 0.144 0.094 0.088 0.432 0.187 0.056 0.124 0.091 0.367 0.411 5.209 0.880 0.639 0.040 0.035 1.557 0.460 0.551 0.054 0.008 0.015 1311 chr21 45184455 45210993 + 0 NA Intergenic AluJb|SINE|Alu -1468 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 1.100 1.446 0.387 1.559 2.990 1.088 1.001 1.485 3.715 1.832 1.860 0.787 0.629 2.981 4.534 4.241 0.940 0.802 0.213 0.841 2.070 2.155 0.818 2.244 1.704 0.850 0.462 0.911 2.679 1.601 1.276 0.439 1.540 2.829 1.559 1.557 0.877 1.136 1.033 0.412 0.390 0.220 1107 chr2 16143904 16174882 + 0 NA Intergenic Intergenic -31156 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.719 0.052 0.042 0.001 0.041 0.016 0.064 3.960 0.717 1.124 0.014 0.015 0.028 0.066 0.060 0.043 0.048 0.116 0.023 0.005 0.041 0.058 0.163 0.029 0.020 0.030 0.161 0.126 0.039 0.122 0.279 0.035 0.024 0.280 0.142 0.076 0.038 0.037 0.032 0.020 1997 chrX 13429230 13452783 + 0 NA Intergenic Intergenic 87646 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 0.098 0.331 0.005 0.298 0.428 0.432 0.136 0.315 0.210 0.069 0.259 0.334 0.306 0.482 0.272 0.755 0.045 3.134 0.030 0.006 0.689 0.414 0.078 0.338 0.663 0.399 0.254 0.250 0.670 0.376 0.296 0.070 0.192 0.167 0.795 0.114 0.067 0.228 1.633 0.252 0.098 0.064 53 chr1 40604671 40609347 + 0 NA Intergenic Intergenic -20032 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 1.291 0.148 9.117 0.122 0.179 0.257 0.453 0.605 0.769 0.261 2.119 0.063 0.844 6.156 0.712 0.968 0.099 0.128 0.603 0.232 0.064 0.436 0.177 0.232 0.216 1.729 0.159 0.487 0.045 0.170 0.641 0.201 0.236 0.106 10.361 0.149 0.034 0.065 0.062 0.055 801 chr17 15540050 15564947 + 0 NA intron (NM_006470, intron 4 of 8) intron (NM_006470, intron 4 of 8) -29480 NM_006382 374286 Hs.548021 NM_006382 ENSG00000241322 CDRT1 C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2 CMT1A duplicated region transcript 1 protein-coding 2.053 2.483 3.591 1.593 3.019 3.229 1.330 1.204 3.357 1.605 3.488 3.315 0.653 2.728 3.813 3.047 1.921 2.282 0.092 0.074 1.783 2.134 0.068 6.531 5.257 1.751 0.849 1.629 2.974 5.203 0.807 0.971 2.861 3.638 3.135 3.825 3.885 0.929 2.020 2.974 2.570 1.654 839 chr17 37829913 37836504 + 0 NA intron (NM_001291726, intron 2 of 6) intron (NM_001291726, intron 2 of 6) 8502 NM_002686 5409 Hs.1892 NM_002686 ENSG00000141744 PNMT PENT|PNMTase phenylethanolamine N-methyltransferase protein-coding 26.434 0.463 10.666 0.489 0.868 0.163 0.389 0.475 5.934 2.403 7.881 1.043 0.207 0.348 1.757 0.752 0.670 0.379 0.606 0.106 0.199 0.121 0.146 0.108 0.238 0.027 0.048 0.581 0.214 1.140 0.086 0.049 1.175 3.285 0.042 0.574 2.504 0.273 0.132 0.080 0.026 0.030 1111 chr2 24297613 24308593 + 0 NA intron (NM_147184, intron 4 of 5) AluSx|SINE|Alu 3359 NR_111929 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 1.599 2.278 0.604 1.209 2.500 2.718 3.637 1.000 7.954 6.297 2.164 1.316 1.284 2.088 1.873 1.932 0.778 1.348 1.227 0.806 1.228 1.305 1.162 1.673 2.920 1.490 0.758 1.059 1.692 3.416 1.868 1.322 1.767 2.378 1.867 1.359 1.303 2.947 1.184 1.703 0.986 0.689 1948 chr9 100546428 100572158 + 0 NA Intergenic SVA_D|Other|Other -56244 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 0.709 0.266 0.352 0.803 1.772 0.220 1.392 1.048 1.254 0.574 0.576 0.858 0.133 0.560 0.569 1.846 0.215 0.090 0.038 0.054 1.206 0.590 0.168 0.136 1.239 0.225 0.142 0.782 0.251 0.358 0.269 0.141 0.615 5.115 0.086 0.347 0.157 0.395 0.417 0.156 0.265 0.193 1605 chr5 175959925 175972555 + 0 NA Intergenic Intergenic -1819 NM_014901 22838 Hs.434888 NM_014901 ENSG00000146083 RNF44 - ring finger protein 44 protein-coding 2.127 2.668 0.470 0.540 1.917 2.026 2.786 1.048 4.359 3.321 1.951 0.939 1.270 1.821 1.999 2.230 0.969 1.390 1.707 1.824 2.137 2.431 1.785 1.902 2.561 3.629 1.814 1.940 2.675 3.338 4.600 3.231 2.378 2.385 3.171 1.912 1.139 4.317 1.490 1.054 1.945 1.526 824 chr17 34897906 34905075 + 0 NA 5' UTR (NM_024835, exon 2 of 14) 5' UTR (NM_024835, exon 2 of 14) 753 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 11.098 4.960 0.788 1.746 5.522 5.639 4.333 1.484 4.918 3.408 4.177 1.763 2.401 3.486 3.375 3.222 1.481 1.099 1.237 2.416 2.625 3.299 2.605 5.049 5.768 2.765 1.266 1.690 4.820 5.149 2.659 2.842 2.905 6.993 2.552 2.217 2.249 4.643 2.879 2.638 2.747 1.682 1376 chr3 49054537 49061426 + 0 NA promoter-TSS (NR_029948) promoter-TSS (NR_029948) 73 NM_199074 25915 Hs.31387 NM_199069 ENSG00000178057 NDUFAF3 2P1|C3orf60|E3-3 NADH:ubiquinone oxidoreductase complex assembly factor 3 protein-coding 4.206 6.034 1.536 1.519 4.850 6.069 6.140 1.821 6.303 5.248 3.025 2.723 2.121 2.604 5.040 2.957 2.139 1.758 2.749 1.591 1.803 2.070 1.838 3.725 6.589 5.674 3.109 1.537 2.233 5.233 7.931 2.444 3.355 7.167 5.002 1.596 2.087 9.974 4.297 2.921 2.328 1.241 1604 chr5 172323728 172340125 + 0 NA intron (NM_001031711, intron 3 of 9) intron (NM_001031711, intron 3 of 9) -53806 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 1.444 1.988 3.162 0.718 1.327 3.491 3.607 1.947 2.871 1.979 1.526 0.722 0.604 1.961 0.761 1.623 1.311 0.215 0.578 0.076 1.411 1.218 1.490 0.772 2.772 0.954 0.416 1.425 0.427 1.532 0.293 2.943 0.991 3.652 2.436 0.529 2.656 0.295 1.027 0.485 4.139 2.898 1306 chr21 40683683 40696037 + 0 NA intron (NR_046655, intron 2 of 2) AluJo|SINE|Alu 2227 NR_046655 100874093 Hs.588102 NR_046655 ENSG00000238141 BRWD1-AS1 - BRWD1 antisense RNA 1 ncRNA 1.308 1.512 7.323 0.415 1.843 1.579 1.344 0.985 5.688 3.671 4.567 0.546 0.848 0.970 3.328 0.847 1.515 0.748 0.778 2.145 0.928 1.341 1.429 0.949 2.295 1.349 0.675 1.218 1.795 2.150 2.409 2.965 4.365 2.288 1.782 1.070 4.048 2.522 0.834 0.839 0.900 0.599 280 chr10 134476897 134485181 + 0 NA intron (NM_005539, intron 4 of 15) intron (NM_005539, intron 4 of 15) -13740 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 0.268 0.748 0.008 1.212 2.537 0.053 2.681 1.843 8.577 3.070 0.716 1.464 1.436 2.112 0.105 5.019 0.011 2.804 0.012 0.067 3.270 3.625 0.085 0.038 1.653 0.729 0.406 0.648 0.217 0.361 2.175 0.104 1.644 2.618 7.443 1.211 0.479 0.500 1.318 2.397 0.061 0.024 1140 chr2 85481729 85491967 + 0 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 46073 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA 0.700 0.107 4.668 0.074 0.280 0.129 0.099 0.041 1.221 0.211 2.922 0.039 0.046 0.064 1.911 0.153 3.264 0.163 0.020 0.090 0.073 0.189 0.098 0.249 0.110 0.092 0.143 0.132 0.321 0.097 0.027 0.059 0.459 0.064 0.035 2.268 0.190 0.062 0.133 0.090 0.030 436 chr12 50274844 50318245 + 0 NA intron (NM_012306, intron 1 of 11) intron (NM_012306, intron 1 of 11) 1216 NM_012306 23017 Hs.567424 NM_012306 ENSG00000135472 FAIM2 LFG|LFG2|NGP35|NMP35|TMBIM2 Fas apoptotic inhibitory molecule 2 protein-coding 0.166 0.090 0.027 0.108 0.229 0.035 0.086 0.107 6.613 1.405 0.492 0.047 0.019 0.234 0.141 0.136 0.013 0.138 0.152 0.032 0.128 0.036 0.073 0.130 0.094 0.050 0.036 0.129 0.226 0.591 0.131 0.735 1.472 0.224 0.047 0.108 0.425 0.157 0.228 0.117 0.017 0.019 1651 chr6 30897905 30903105 + 0 NA promoter-TSS (NM_205854).3 promoter-TSS (NM_205854).3 -553 NM_205854 389376 Hs.211267 NM_205854 ENSG00000196260 SFTA2 GSGL541|SFTPG|SP-G|UNQ541 surfactant associated 2 protein-coding 4.920 0.060 0.012 0.146 0.598 0.073 1.441 5.754 1.837 0.123 7.724 0.056 2.961 0.240 2.256 0.037 0.080 0.038 0.853 0.393 0.042 0.042 0.159 0.081 0.026 5.941 0.223 0.293 0.122 0.121 0.598 0.218 0.090 0.259 0.121 0.112 0.127 0.043 1274 chr20 55352104 55372568 + 0 NA Intergenic AluSz|SINE|Alu 157978 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 0.114 0.125 0.082 0.139 0.418 8.106 0.898 0.685 2.818 0.866 0.894 0.908 1.032 1.019 1.004 2.057 1.149 0.046 0.035 0.054 1.088 0.772 1.343 4.115 7.014 2.563 1.017 1.449 0.874 4.785 0.236 0.547 2.249 0.635 2.094 1.204 3.128 9.675 1.846 0.474 2.603 2.860 1737 chr7 17123835 17144419 + 0 NA Intergenic Intergenic -204149 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 0.225 0.233 0.033 0.056 0.128 6.320 0.211 0.107 1.236 0.171 0.906 0.141 0.017 0.296 0.322 0.145 1.318 0.175 0.252 0.007 0.432 0.211 0.011 0.146 1.079 0.038 0.053 0.146 0.107 0.694 0.055 0.877 1.484 0.073 0.117 0.864 1.106 1.078 0.817 0.328 0.017 0.005 1921 chr8 145638477 145656736 + 0 NA Intergenic AluSp|SINE|Alu -5327 NM_130849 55630 Hs.521934 NM_017767 ENSG00000147804 SLC39A4 AEZ|AWMS2|ZIP4 solute carrier family 39 member 4 protein-coding 5.265 2.654 3.154 1.883 4.571 2.845 1.835 1.967 6.030 3.222 1.199 4.052 0.894 1.374 5.728 4.492 2.132 0.878 2.034 0.798 1.167 1.409 1.199 0.878 7.279 2.108 1.037 1.449 1.541 2.293 3.439 1.109 1.121 7.172 1.156 0.490 1.700 4.233 1.756 1.031 1.274 0.782 1239 chr20 34453438 34478340 + 0 NA intron (NM_016436, intron 9 of 17) intron (NM_016436, intron 9 of 17) 76659 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 0.843 1.560 0.025 0.250 0.659 6.637 0.708 0.375 nan 0.407 0.666 0.183 0.521 0.381 0.630 1.077 1.238 4.138 0.085 0.039 0.853 0.589 1.794 5.383 3.822 0.654 0.288 0.541 0.641 0.686 0.864 0.076 0.782 1.232 0.263 0.880 2.265 7.438 1.051 1.572 0.504 0.323 694 chr16 4315457 4330622 + 0 NA promoter-TSS (NM_003223) promoter-TSS (NM_003223) -38 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 2.029 2.527 0.193 0.524 1.634 1.176 2.438 0.729 3.929 2.022 1.273 0.744 0.405 0.855 1.343 1.750 0.631 0.936 0.533 0.931 1.383 1.667 1.442 2.160 2.043 1.312 0.541 1.123 1.412 2.545 1.584 2.008 4.096 1.948 1.959 0.758 1.072 2.495 1.618 0.855 0.649 0.420 1777 chr7 74063468 74077433 + 0 NA Intergenic Tigger13a|DNA|TcMar-Tigger -1541 NM_033000 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 3.525 2.830 2.606 0.792 3.432 2.675 7.906 1.616 6.343 3.825 5.430 1.340 1.497 2.244 4.050 3.984 2.500 3.459 1.266 2.413 3.684 4.894 1.612 4.765 4.291 2.098 0.898 3.537 3.498 4.539 4.417 1.470 3.475 2.861 3.602 2.209 2.198 2.231 3.220 2.634 1.955 1.309 1747 chr7 27129313 27193650 + 0 NA promoter-TSS (NR_122069) promoter-TSS (NR_122069) -57 NR_122069 285943 Hs.714774 NR_122069 HOXA-AS2 HOXA3as HOXA cluster antisense RNA 2 ncRNA 0.711 0.088 0.721 0.958 2.133 2.774 1.091 0.223 2.460 1.461 0.573 0.243 0.395 0.187 2.043 1.985 0.578 1.511 0.260 9.033 1.346 1.165 0.532 2.767 2.280 0.821 0.349 1.482 2.056 2.111 1.235 0.460 0.621 1.597 1.091 1.263 1.243 1.190 0.269 0.280 3.096 3.697 1233 chr20 32306539 32323703 + 0 NA Intergenic Intergenic -4445 NR_104259 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 - zinc finger protein 341 protein-coding 2.368 1.458 1.451 0.528 1.625 1.772 1.764 0.815 nan 1.062 1.990 0.349 0.385 0.826 3.385 0.671 3.565 0.771 0.371 0.711 1.181 1.567 1.006 2.521 1.260 0.864 0.459 1.394 0.980 3.339 1.780 1.150 2.567 1.793 0.942 0.948 5.024 1.539 0.733 0.532 0.265 0.142 760 chr16 86596394 86625373 + 0 NA Intergenic Intergenic -1232 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 0.903 0.158 0.006 0.013 0.075 4.656 0.131 0.095 0.177 0.114 0.085 0.045 0.393 1.082 0.160 2.016 0.059 5.741 0.083 0.010 1.404 0.834 0.025 0.784 0.398 0.967 0.413 0.205 0.668 0.690 0.276 1.812 0.473 0.112 6.568 0.380 0.258 0.247 0.354 0.576 1.163 1.048 418 chr12 15079506 15089434 + 0 NA intron (NM_152321, intron 3 of 6) intron (NM_152321, intron 3 of 6) -2411 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 0.840 0.175 2.457 0.500 1.299 0.082 2.602 1.980 4.257 1.631 5.493 0.756 0.036 0.619 3.564 0.890 1.160 0.319 0.112 0.014 0.028 0.040 0.022 0.071 0.047 0.016 1.228 0.173 0.057 0.086 0.063 0.817 0.484 0.009 0.469 1.899 0.033 0.071 0.015 0.018 0.016 1078 chr19 49519961 49534967 + 0 NA 5' UTR (NM_000737, exon 1 of 3) 5' UTR (NM_000737, exon 1 of 3) 168 NM_000737 1082 Hs.446683 NM_000737 ENSG00000104827 CGB3 CGB|CGB5|CGB7|CGB8|hCGB chorionic gonadotropin beta subunit 3 protein-coding 5.580 0.795 0.095 0.519 0.793 0.641 0.386 0.390 nan 0.851 0.395 1.184 0.355 0.232 0.199 1.400 0.184 1.184 0.167 0.046 0.133 0.143 0.152 0.090 0.380 0.202 0.135 0.285 0.410 0.374 0.885 0.615 0.208 0.762 0.316 0.351 0.391 1.838 0.616 0.353 0.242 0.157 1391 chr3 71097835 71122884 + 0 NA intron (NM_032682, intron 7 of 20) intron (NM_032682, intron 7 of 20) 3715 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.733 1.169 0.478 0.886 1.713 0.040 0.879 0.454 5.703 3.729 0.596 0.729 0.774 1.925 0.065 1.314 0.167 0.692 0.242 0.044 0.644 0.543 0.009 0.414 0.463 0.453 0.273 0.232 0.546 0.286 0.131 0.579 0.432 0.973 1.354 0.666 0.478 0.171 1.155 1.193 0.166 0.097 854 chr17 40572869 40581980 + 0 NA Intergenic Intergenic -2086 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|FKSG13|cavin-1 polymerase I and transcript release factor protein-coding 1.273 4.322 0.952 1.105 1.938 4.508 2.452 1.731 nan 0.150 0.746 0.352 2.079 2.294 1.041 2.030 1.475 1.000 0.077 0.153 2.301 2.090 3.200 1.369 7.930 2.833 1.234 0.673 4.541 4.090 2.535 0.993 0.620 1.993 1.678 0.378 1.197 6.059 2.421 1.545 3.355 2.164 326 chr11 63951571 63955826 + 0 NA 5' UTR (NM_006819, exon 1 of 14) 5' UTR (NM_006819, exon 1 of 14) 111 NM_006819 10963 Hs.337295 NM_006819 ENSG00000168439 STIP1 HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L stress induced phosphoprotein 1 protein-coding 3.958 4.590 1.365 1.338 3.441 3.270 2.851 1.317 5.361 4.125 3.857 2.505 1.415 1.694 4.335 3.643 1.523 2.411 2.630 2.290 2.524 3.074 3.198 3.471 7.416 6.654 3.598 2.023 5.284 4.344 5.420 1.613 1.899 3.547 2.907 1.394 1.800 5.709 2.628 2.561 2.398 1.585 1165 chr2 159971093 160014588 + 0 NA intron (NM_001145909, intron 5 of 26) intron (NM_001145909, intron 5 of 26) -50506 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 0.330 0.609 1.149 0.625 0.904 0.111 0.830 0.849 2.523 1.114 1.686 0.656 0.594 0.430 0.410 1.211 0.059 1.371 0.051 0.030 2.134 1.593 0.115 2.057 0.407 0.236 0.118 0.746 0.201 0.258 0.358 0.136 0.429 1.136 1.416 0.535 0.216 0.172 0.290 0.411 0.036 0.018 1532 chr5 34655326 34658780 + 0 NA intron (NM_001145520, intron 1 of 17) CpG 457 NM_001145520 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 4.242 5.449 0.161 3.301 8.375 1.856 5.742 3.609 9.480 5.671 14.376 2.175 3.561 2.945 11.187 3.850 1.703 4.377 0.929 0.363 2.841 2.369 2.294 2.198 3.611 10.188 5.490 1.515 4.432 5.440 6.952 3.358 3.588 5.384 2.617 2.793 1.634 11.245 1.684 2.985 5.965 4.016 1710 chr6 134287904 134318554 + 0 NA intron (NM_004865, intron 2 of 6) L2a|LINE|L2 28928 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 0.596 0.286 0.012 0.167 0.278 0.485 0.166 0.271 0.984 0.442 0.768 0.455 0.608 0.202 0.557 0.393 0.074 2.050 0.053 0.027 0.425 0.149 0.024 0.666 0.095 0.060 0.053 0.150 0.067 0.328 0.203 0.047 0.245 0.372 0.253 0.111 0.817 0.019 0.456 0.281 0.064 0.044 296 chr11 9480636 9484650 + 0 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) 131 NM_001282656 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 5.522 8.593 4.638 1.750 4.901 5.564 4.487 3.078 10.437 9.443 7.263 2.360 2.693 4.043 6.072 5.905 1.785 4.724 3.802 5.179 4.593 6.383 4.325 8.023 11.785 8.711 4.071 2.791 8.001 7.054 4.652 4.535 4.277 7.927 8.212 3.764 3.536 7.421 7.043 5.657 4.108 3.525 543 chr13 111602257 111625595 + 0 NA Intergenic MER41-int|LTR|ERV1 -4448 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 2.122 0.546 0.021 2.129 3.120 0.043 0.229 1.235 1.664 0.211 0.121 2.230 1.089 1.346 0.549 4.240 0.205 0.918 0.078 0.018 1.514 1.225 0.256 0.458 3.052 1.055 0.551 0.856 1.272 0.319 0.595 0.798 0.235 5.312 0.071 0.152 0.781 0.083 1.632 0.144 0.582 0.691 1524 chr5 17233906 17260412 + 0 NA intron (NM_006317, intron 1 of 1) AluJb|SINE|Alu 29489 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 0.331 0.936 0.072 2.269 3.820 3.098 1.122 1.494 0.924 0.313 0.382 0.904 1.586 1.614 0.386 4.289 0.514 1.346 0.045 0.042 1.992 1.113 0.350 1.262 0.239 0.970 0.728 0.864 1.340 0.624 0.312 0.140 0.269 0.493 0.042 0.443 0.488 1.003 2.581 1.363 1.028 0.758 1627 chr6 17701093 17708008 + 0 NA intron (NM_005124, intron 1 of 21) intron (NM_005124, intron 1 of 21) -1811 NR_134616 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 2.455 4.097 5.313 0.821 3.452 6.963 1.686 1.152 3.620 2.476 4.179 1.755 1.311 1.700 3.631 2.189 1.217 2.214 0.841 2.364 3.307 3.476 0.752 4.120 7.405 4.151 1.646 0.976 3.235 2.390 5.637 1.324 1.815 7.307 5.284 1.274 1.364 4.853 2.315 1.534 1.141 0.784 625 chr15 34330029 34350058 + 0 NA intron (NM_012125, intron 2 of 2) AluSz|SINE|Alu -8740 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 0.294 0.691 0.136 0.294 0.694 0.599 0.481 0.132 0.983 0.894 0.286 0.178 0.179 0.171 0.352 0.613 0.197 2.601 0.320 0.291 0.235 0.281 0.443 0.515 0.377 0.629 0.281 0.206 3.598 1.214 1.128 0.500 0.597 0.810 0.866 0.296 0.396 0.888 0.767 1.069 0.483 0.264 356 chr11 71933088 71937221 + 0 NA promoter-TSS (NM_001567) promoter-TSS (NM_001567) -728 NM_001567 3636 Hs.523875 NM_001567 ENSG00000165458 INPPL1 OPSMD|SHIP2 inositol polyphosphate phosphatase like 1 protein-coding 5.647 6.391 1.753 1.097 3.173 5.195 3.582 1.640 10.069 7.097 5.795 1.740 1.910 3.604 5.012 3.054 2.315 3.219 3.346 5.686 3.597 3.861 5.137 3.754 9.126 7.404 4.014 3.008 7.259 7.681 6.188 7.799 7.018 2.988 4.482 2.428 2.789 14.058 2.790 3.452 1.310 0.656 689 chr16 3011215 3021176 + 0 NA exon (NM_001253725, exon 3 of 8) exon (NM_001253725, exon 3 of 8) 1978 NM_024507 79412 Hs.661128 NM_024507 ENSG00000131650 KREMEN2 KRM2 kringle containing transmembrane protein 2 protein-coding 1.993 1.241 0.037 0.409 0.871 0.673 1.351 0.265 6.134 2.601 1.358 0.545 0.364 0.285 1.130 0.877 0.501 0.194 0.661 0.821 0.359 0.255 1.963 1.920 1.897 0.660 0.532 0.319 0.352 1.956 2.200 2.230 1.385 1.349 1.612 0.432 0.541 7.057 0.420 0.345 0.953 0.581 1223 chr20 22555631 22566506 + 0 NA TTS (NM_021784) TTS (NM_021784) -1788 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 0.122 0.291 0.023 0.087 0.428 0.023 3.143 0.283 2.962 1.774 4.664 0.884 1.241 1.538 0.089 2.985 0.117 7.505 0.013 1.156 1.116 0.007 0.049 0.107 0.139 0.149 0.093 0.102 4.518 0.026 2.201 0.068 0.535 0.024 0.079 0.117 0.316 0.993 6.384 0.011 0.029 862 chr17 41789342 41806862 + 0 NA Intergenic CpG 38054 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 0.648 2.659 0.120 0.757 1.061 0.349 0.403 0.940 nan 0.489 0.333 0.409 0.664 0.649 1.319 3.928 0.250 2.471 0.193 0.095 4.506 4.267 0.387 10.077 4.084 0.603 0.378 0.244 1.734 2.730 0.467 0.270 1.532 0.690 0.131 0.503 0.653 1.472 0.473 0.495 0.109 0.055 235 chr10 24982681 24991405 + 0 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 25554 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 0.182 0.208 4.972 0.107 0.272 0.063 0.078 0.207 0.222 0.074 0.094 0.034 0.041 0.251 0.265 0.715 0.186 0.368 0.023 0.064 0.221 0.092 0.174 0.096 0.074 0.069 0.081 0.263 0.156 0.373 0.137 0.065 0.275 0.229 0.064 0.126 0.085 0.060 0.267 0.194 0.040 550 chr14 21173961 21189165 + 0 NA Intergenic PABL_B-int|LTR|ERV1 24627 NM_194431 6038 Hs.283749 NM_002937 ENSG00000258818 RNASE4 RAB1|RNS4 ribonuclease A family member 4 protein-coding 1.159 0.051 0.317 0.125 0.405 0.030 0.216 0.174 3.501 0.540 4.564 0.105 0.008 0.257 0.373 0.094 0.113 0.073 0.033 0.018 0.095 0.067 0.017 0.120 0.117 0.075 0.010 1.373 0.131 0.102 0.042 0.064 0.698 0.206 0.054 0.343 0.158 0.057 0.099 0.055 0.027 0.003 1853 chr8 59570569 59576794 + 0 NA Intergenic LTR47A|LTR|ERVL -1277 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1.471 3.171 5.131 0.761 2.237 4.411 1.965 1.119 5.451 3.843 1.675 0.941 1.519 2.284 2.199 1.162 0.875 1.791 1.766 2.410 2.300 3.781 1.115 3.483 4.140 5.643 1.987 2.568 2.452 4.695 6.489 1.735 1.624 3.149 3.656 2.431 0.927 2.752 1.857 1.154 2.667 2.671 1065 chr19 47446246 47481896 + 0 NA intron (NM_004491, intron 2 of 5) L1ME4a|LINE|L1 42138 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 0.481 0.980 0.037 0.080 0.223 0.214 0.102 0.118 nan 0.119 0.288 0.106 1.059 0.141 0.384 0.701 0.294 3.189 0.137 0.035 0.304 0.196 0.608 0.212 0.163 0.260 0.102 0.133 0.267 0.840 0.210 0.219 0.125 0.169 0.357 0.175 0.243 0.129 0.268 0.611 0.793 0.542 707 chr16 11874669 11896361 + 0 NA intron (NM_014153, intron 1 of 22) intron (NM_014153, intron 1 of 22) 5599 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 3.496 1.492 9.847 0.400 1.075 2.104 1.242 0.275 5.163 1.643 1.203 0.426 0.461 1.267 0.706 1.481 2.154 0.658 1.392 0.312 1.875 1.725 1.535 0.938 2.124 1.397 0.683 0.384 1.021 1.546 1.088 1.228 1.313 1.588 1.355 0.225 0.565 1.197 0.925 0.617 0.926 0.626 1462 chr4 4762922 4768631 + 0 NA intron (NR_125892, intron 1 of 2) intron (NR_125892, intron 1 of 2) 2289 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 0.452 0.163 0.011 1.278 0.316 0.060 0.014 0.088 0.070 0.037 2.008 2.617 0.133 1.433 1.862 3.068 0.036 0.024 0.185 0.115 0.014 0.057 1.641 1.002 0.569 0.027 12.690 0.087 0.025 0.027 0.258 0.224 0.208 0.880 0.262 0.054 1.185 4.036 0.658 0.183 1499 chr4 149706939 149719240 + 0 NA Intergenic Intergenic 150441 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 0.352 0.914 0.111 0.195 0.251 0.021 1.884 1.860 0.337 0.105 0.810 0.427 0.157 2.233 0.109 0.144 5.035 0.033 0.011 0.835 0.401 0.067 0.052 0.024 0.025 0.006 0.138 0.066 0.047 0.025 0.054 0.216 0.007 0.049 0.389 0.005 0.225 0.407 0.004 781 chr17 2074137 2086956 + 0 NA intron (NM_017575, intron 12 of 18) intron (NM_017575, intron 12 of 18) -55426 NR_110888 101927839 Hs.665648 NR_110888 ENSG00000225084 LOC101927839 - uncharacterized LOC101927839 ncRNA 0.062 0.888 0.024 0.414 0.460 0.024 0.461 0.024 0.244 0.171 1.106 0.285 0.747 0.343 0.158 0.923 0.008 6.657 1.442 0.032 0.298 0.197 0.040 0.100 0.172 0.203 0.080 0.090 0.832 0.343 0.143 0.025 0.105 0.256 0.210 0.038 0.038 0.114 0.801 0.931 0.036 0.012 1066 chr19 47486165 47490715 + 0 NA intron (NM_004491, intron 2 of 5) intron (NM_004491, intron 2 of 5) -34661 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 0.157 0.556 0.032 0.138 0.567 0.354 0.325 nan 0.355 0.519 0.097 0.416 0.217 0.333 0.757 0.084 1.224 1.127 0.061 0.396 0.177 0.447 0.214 0.250 0.045 0.069 0.133 0.220 1.168 0.163 6.480 0.240 0.110 0.722 0.624 0.170 0.166 0.264 0.231 0.042 0.045 1758 chr7 55174784 55207525 + 0 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 13644 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 2.857 1.131 0.622 0.516 1.035 1.105 3.381 1.111 2.157 0.918 17.963 1.218 1.167 1.780 3.005 4.159 1.723 3.743 0.104 0.021 2.197 1.818 0.509 0.713 2.078 1.184 0.434 8.404 3.177 0.617 0.963 0.357 0.413 1.256 5.720 0.287 0.461 1.001 4.209 2.626 1.803 1.495 302 chr11 12743064 12751546 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 51336 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 2.564 0.875 5.025 1.115 2.898 1.091 1.820 2.370 5.984 3.461 3.758 1.271 0.599 1.048 2.240 2.959 0.863 1.556 1.082 0.036 1.279 0.637 0.234 1.427 0.556 0.348 0.230 1.450 0.331 2.336 0.338 0.159 1.321 3.640 0.758 1.451 2.132 0.474 0.816 0.715 0.027 0.042 1526 chr5 32584585 32587764 + 0 NA intron (NM_006713, intron 1 of 4) CpG 569 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 homolog, transcriptional regulator protein-coding 3.868 4.744 2.324 3.773 8.815 4.848 4.071 1.694 11.482 10.040 6.549 2.211 2.153 3.109 3.189 4.442 3.144 3.613 2.398 4.399 2.722 3.554 2.203 4.848 3.646 8.188 4.587 1.807 1.733 3.561 4.833 4.323 2.452 14.398 2.974 2.196 3.140 6.578 4.243 2.005 2.758 1.712 752 chr16 69562228 69568353 + 0 NA Intergenic MER33|DNA|hAT-Charlie 34481 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 2.152 1.928 0.193 0.960 2.007 7.538 1.169 0.827 0.960 0.738 0.595 2.187 1.291 1.106 2.293 3.116 2.133 2.794 0.075 1.800 2.912 1.988 2.607 2.387 5.558 8.902 3.667 1.774 4.791 4.074 2.835 1.663 2.771 3.112 4.810 0.640 0.610 3.852 2.393 1.629 1.927 1.262 102 chr1 145394218 145402433 + 0 NA intron (NM_001039703, intron 68 of 85) L1MC4a|LINE|L1 -14866 NM_202004 148738 Hs.632436 NM_145277 ENSG00000168509 HFE2 HFE2A|HJV|JH|RGMC hemochromatosis type 2 (juvenile) protein-coding 2.159 3.235 0.695 1.521 3.556 3.273 1.796 0.873 13.752 10.468 2.183 1.586 1.921 2.192 1.743 1.742 0.703 2.222 1.073 2.617 1.739 1.020 1.153 3.453 2.478 1.780 0.904 0.603 2.195 5.080 3.629 0.798 3.552 4.673 2.742 1.491 1.577 5.579 3.035 0.469 1.402 0.914 1495 chr4 129729489 129735152 + 0 NA promoter-TSS (NM_001287441) promoter-TSS (NM_001287441) -105 NM_001287442 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 5.699 5.575 1.630 0.624 2.933 5.343 5.854 1.999 4.264 2.444 2.214 2.032 2.049 1.671 2.012 3.589 1.706 3.456 1.530 4.429 3.014 4.348 2.250 5.765 6.082 4.191 1.819 1.421 8.011 5.601 4.325 8.165 2.661 5.029 5.394 1.175 1.524 3.538 4.113 3.301 3.031 2.064 1229 chr20 30912751 30919827 + 0 NA intron (NM_004798, intron 7 of 8) AluSx1|SINE|Alu -29858 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS additional sex combs like 1, transcriptional regulator protein-coding 0.535 0.373 0.134 0.606 0.890 0.490 0.128 5.625 1.307 1.228 0.145 0.250 0.360 0.355 0.464 0.134 1.228 6.508 0.111 0.555 0.469 0.064 0.583 0.383 0.119 0.100 0.720 0.298 1.063 0.624 0.479 0.915 0.374 5.063 0.164 0.913 0.312 0.527 0.299 0.057 0.114 1001 chr19 18383672 18417356 + 0 NA Intergenic AluSz6|SINE|Alu 7627 NR_036155 100422833 NR_036155 ENSG00000267959 MIR3188 mir-3188 microRNA 3188 ncRNA 1.447 2.207 0.927 0.997 2.471 3.048 2.888 1.096 nan 1.436 1.144 0.742 0.830 1.218 2.071 1.821 1.698 1.396 0.701 1.531 2.048 2.006 2.868 3.367 3.537 1.207 0.730 0.951 0.964 3.794 3.623 1.781 1.984 4.054 1.837 0.742 1.905 4.152 2.930 0.817 0.497 0.337 1900 chr8 128742561 128780841 + 0 NA Intergenic AluJo|SINE|Alu 13386 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc v-myc avian myelocytomatosis viral oncogene homolog protein-coding 2.411 2.550 0.064 0.540 1.514 1.416 1.868 0.752 2.819 1.750 1.382 1.097 1.283 1.371 3.573 2.390 1.190 40.517 0.641 1.200 2.097 1.967 0.786 16.898 2.913 2.562 1.152 2.010 3.238 2.866 2.236 8.696 5.620 1.671 6.119 2.907 1.264 3.130 10.292 1.193 0.969 0.803 327 chr11 64000841 64020500 + 0 NA intron (NM_004470, intron 2 of 5) intron (NM_004470, intron 2 of 5) 1082 NM_057092 2286 Hs.227729 NM_004470 ENSG00000173486 FKBP2 FKBP-13|PPIase FK506 binding protein 2 protein-coding 3.829 3.694 0.969 0.887 2.872 4.010 2.096 1.037 8.108 5.057 2.985 2.275 1.288 1.739 3.564 2.527 1.548 1.741 5.016 1.916 1.685 1.871 2.073 2.103 6.006 4.128 1.910 2.272 3.261 4.161 3.957 2.228 2.016 3.530 2.339 1.396 2.056 5.834 1.815 2.787 1.308 0.707 796 chr17 8052691 8068514 + 0 NA Intergenic MIR|SINE|MIR -4849 NM_002616 5187 Hs.445534 NM_002616 ENSG00000179094 PER1 PER|RIGUI|hPER period circadian clock 1 protein-coding 0.871 2.060 0.969 0.574 2.000 3.650 0.957 0.654 4.035 2.405 2.081 0.606 0.671 1.047 0.628 1.050 0.731 1.150 1.602 2.074 0.664 0.566 1.016 2.584 3.297 1.224 0.674 0.823 0.588 4.080 3.963 1.259 1.024 6.359 2.698 0.981 1.220 5.465 1.175 1.105 0.986 0.508 27 chr1 23692785 23712556 + 0 NA Intergenic AluJo|SINE|Alu -6313 NM_001077195 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 1.097 1.820 0.499 0.623 1.266 0.783 1.227 0.384 5.865 1.807 1.530 1.333 0.885 0.664 1.786 1.336 1.046 2.082 0.497 0.638 0.840 0.731 0.622 1.462 1.681 0.839 0.369 0.604 1.299 1.715 1.550 0.589 0.968 1.420 1.572 0.524 0.673 1.676 1.125 1.197 0.352 0.213 1380 chr3 52078662 52092187 + 0 NA intron (NM_001947, intron 2 of 2) MIR|SINE|MIR 5037 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 1.336 2.785 0.055 1.866 3.475 2.432 6.925 2.950 4.191 1.581 0.751 1.424 1.203 1.672 1.132 2.348 0.696 1.541 0.702 0.219 1.419 1.738 1.299 1.367 5.895 7.911 3.353 1.481 3.780 0.986 3.531 0.706 0.598 2.824 1.806 0.959 0.329 4.233 1.838 1.699 1.515 1.223 1695 chr6 90924973 90930635 + 0 NA intron (NM_001170794, intron 1 of 6) intron (NM_001170794, intron 1 of 6) 78823 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25 BTB domain and CNC homolog 2 protein-coding 1.360 0.703 8.708 1.339 2.677 0.034 1.838 0.706 6.592 3.978 1.910 1.810 0.807 2.387 0.646 1.576 0.676 2.494 0.166 0.024 0.997 0.902 0.014 1.322 0.787 0.203 0.164 2.994 1.891 1.071 1.745 0.868 0.629 4.816 0.424 0.576 0.912 0.088 1.331 0.443 0.651 0.726 1726 chr7 4775907 4790100 + 0 NA intron (NM_001037165, intron 2 of 8) AluSz|SINE|Alu -32259 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 zeta 1 subunit protein-coding 0.661 2.208 0.488 0.492 1.300 2.783 2.674 1.163 nan 2.337 3.262 0.802 1.250 1.026 0.357 1.651 0.619 2.519 0.184 0.216 2.040 1.941 0.651 3.006 2.313 1.385 0.564 1.104 3.568 5.683 2.384 0.205 1.532 3.977 3.917 1.354 0.269 0.413 2.604 1.584 1.420 1.017 1449 chr3 186499542 186504663 + 0 NA promoter-TSS (NR_002587) promoter-TSS (NR_002587) -483 NR_002587 619567 NR_002587 ENSG00000238942 SNORD2 R39B|SNR39B small nucleolar RNA, C/D box 2 snoRNA 9.130 3.290 1.709 1.683 3.939 3.701 6.504 2.980 5.930 5.716 3.596 3.088 2.344 4.862 8.936 5.496 2.121 2.947 2.049 2.513 6.415 7.674 2.329 5.145 8.930 8.198 3.385 3.499 4.271 3.321 4.962 3.065 4.589 3.369 6.135 2.938 3.522 2.203 5.034 2.398 2.939 2.305 1431 chr3 176632374 176639880 + 0 NA Intergenic Intergenic -101338 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 0.799 0.113 0.718 0.554 0.905 0.025 1.049 1.563 4.208 1.709 8.851 1.383 0.158 0.770 1.200 1.777 0.713 0.061 1.932 0.056 0.238 0.099 0.030 0.085 0.135 0.097 0.042 1.956 0.173 0.022 0.155 0.725 1.419 1.231 0.074 0.606 0.243 0.023 0.228 0.021 0.031 0.013 1366 chr3 12457870 12472817 + 0 NA intron (NM_138712, intron 7 of 7) intron (NM_138712, intron 7 of 7) -60588 NM_001321277 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 0.150 0.370 0.045 0.050 0.078 0.033 0.085 0.025 0.745 0.129 0.071 0.108 0.039 0.022 0.519 0.219 0.013 3.953 0.027 0.009 0.171 0.092 0.034 0.553 0.099 0.145 0.083 0.026 0.140 0.328 0.066 0.037 0.107 0.081 0.053 0.073 0.360 0.050 0.260 0.437 0.192 0.438 186 chr1 170658505 170682162 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 37020 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 0.363 0.213 0.013 0.272 0.413 0.035 0.313 0.022 0.290 0.122 0.133 0.852 0.367 0.684 0.115 0.544 0.076 2.894 0.009 0.198 0.802 0.306 0.006 0.085 0.183 0.071 0.056 0.048 0.608 0.038 0.248 0.030 0.056 0.160 0.646 0.052 0.024 0.089 0.396 0.234 0.039 0.015 460 chr12 58163873 58168542 + 0 NA promoter-TSS (NM_015433) promoter-TSS (NM_015433) -176 NM_015433 25895 Hs.632720 NM_015433 ENSG00000123427 METTL21B FAM119B methyltransferase like 21B protein-coding 3.766 2.180 0.494 1.087 1.876 2.252 2.769 1.448 4.446 3.014 2.860 1.193 1.316 2.438 2.288 1.720 1.043 7.733 1.508 1.424 1.872 2.522 1.817 3.637 3.408 3.035 1.705 1.646 3.509 4.026 5.032 3.624 2.414 3.065 26.338 1.621 2.327 6.547 2.961 1.643 2.528 1.309 816 chr17 28663764 28707712 + 0 NA Intergenic Charlie7|DNA|hAT-Charlie -20204 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 0.283 0.757 0.117 1.573 2.168 0.046 1.582 1.244 7.238 2.015 2.218 0.697 0.243 2.579 1.269 2.161 0.131 0.164 0.180 0.176 2.156 1.373 0.154 0.190 0.252 0.295 0.147 0.389 0.266 1.341 0.208 1.741 2.923 0.681 0.390 0.607 0.365 0.335 0.875 0.383 0.054 0.034 885 chr17 55922864 56048574 + 0 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -4969 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 1.188 1.997 1.162 1.478 2.727 0.853 1.505 1.179 15.586 6.244 2.199 1.371 2.015 1.901 0.773 3.478 0.390 1.614 1.046 0.147 2.118 1.827 0.833 1.348 2.786 0.507 0.266 1.145 1.910 3.499 2.211 0.688 1.083 2.665 1.319 0.739 0.743 0.775 1.530 0.997 3.546 2.990 394 chr12 2984887 2987954 + 0 NA promoter-TSS (NM_001252499) promoter-TSS (NM_001252499) 55 NR_027365 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 6.770 9.232 2.249 1.851 3.999 7.208 8.118 2.297 12.567 5.004 5.576 1.841 2.576 3.718 5.584 4.273 2.521 4.342 2.383 2.055 4.442 6.435 2.937 6.305 7.910 7.530 2.842 4.205 10.961 8.120 11.598 2.921 3.325 6.842 5.812 2.670 2.306 20.119 2.903 2.489 5.125 2.881 766 chr16 87977507 87986738 + 0 NA Intergenic Intergenic -2916 NM_079837 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 2.721 1.293 1.755 1.399 3.781 3.597 2.359 0.652 6.592 2.967 3.335 1.692 0.625 1.100 3.355 2.125 1.776 2.112 2.119 1.592 2.320 2.961 1.902 1.883 3.430 3.624 1.879 1.893 2.113 3.046 3.491 4.516 4.024 7.562 2.006 1.406 5.349 2.877 1.778 1.106 1.171 0.785 1818 chr7 142975697 142988007 + 0 NA promoter-TSS (NM_001242773) promoter-TSS (NM_001242773) -140 NM_001242773 135932 Hs.17558 NM_153345 ENSG00000178826 TMEM139 - transmembrane protein 139 protein-coding 2.973 1.370 0.323 0.516 1.517 0.606 2.768 1.163 1.389 0.669 1.657 0.912 0.633 0.711 4.401 0.959 0.830 1.037 0.226 0.450 1.225 0.827 0.772 1.189 1.263 0.904 0.386 0.719 0.942 1.404 1.033 0.424 1.266 2.220 1.124 0.587 4.972 1.323 0.761 0.480 0.603 0.384 1638 chr6 22826127 22830000 + 0 NA Intergenic Intergenic -109910 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 7.769 0.746 7.058 1.463 2.754 4.930 2.795 3.199 4.438 5.277 6.524 1.605 0.496 3.543 2.517 0.544 0.198 3.072 0.573 0.036 2.740 1.770 0.056 0.345 1.575 0.950 0.443 2.292 2.372 0.357 0.279 1.465 1.619 2.104 0.318 1.424 1.519 0.225 0.658 1.588 0.535 0.458 1601 chr5 172157981 172169231 + 0 NA Intergenic Intergenic -18900 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 1.037 0.249 0.453 0.904 1.211 0.129 0.459 1.582 1.193 0.172 0.176 0.207 0.303 1.606 0.778 1.554 1.392 0.212 0.152 0.086 1.728 1.471 0.237 0.139 0.974 0.298 0.207 0.264 7.600 0.452 1.107 0.529 0.540 1.793 0.365 0.774 0.550 0.224 0.346 0.476 2.078 1.302 1971 chr9 127619485 127636432 + 0 NA intron (NM_030978, intron 2 of 5) AluSx1|SINE|Alu 3561 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding 1.704 2.069 0.597 1.512 4.487 1.548 5.518 1.113 4.545 2.959 1.883 1.645 0.961 2.095 2.761 2.307 1.203 1.840 0.673 0.925 2.296 2.589 1.687 3.979 2.299 3.521 1.719 1.789 1.684 2.212 3.681 1.143 2.770 4.418 2.245 1.467 1.020 3.359 2.336 1.231 1.658 1.080 100 chr1 114346212 114356897 + 0 NA intron (NR_130896, intron 1 of 7) L1MD2|LINE|L1 3544 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 ROSBIN round spermatid basic protein 1 protein-coding 1.503 0.832 0.222 0.515 0.983 0.889 1.063 0.515 1.479 0.919 0.590 0.725 0.411 0.878 1.833 1.032 0.349 0.984 0.956 0.429 0.642 0.581 0.561 0.763 1.337 0.700 0.363 0.404 1.207 0.731 0.892 0.583 1.456 0.978 3.960 0.412 0.362 2.432 0.909 0.978 0.744 0.501 1454 chr3 189653239 189679738 + 0 NA Intergenic Intergenic 118777 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 0.959 0.146 0.105 1.189 1.896 1.415 2.275 1.831 5.729 3.216 1.921 1.751 0.290 2.300 1.570 2.377 0.792 0.835 0.034 0.026 2.353 0.947 0.031 2.256 2.905 0.123 0.123 2.773 0.923 0.605 0.492 0.236 1.974 2.118 1.147 0.994 0.650 1.297 1.557 0.215 0.030 0.023 129 chr1 151479599 151490040 + 0 NA intron (NM_020770, intron 1 of 20) intron (NM_020770, intron 1 of 20) 957 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 4.822 0.573 6.656 2.413 5.238 0.993 4.007 4.678 42.666 34.700 4.498 3.247 0.440 5.486 2.791 3.905 1.966 0.309 3.889 0.437 0.390 0.129 0.559 0.245 0.665 0.773 0.456 4.053 0.314 1.123 1.130 6.175 8.583 8.160 0.694 2.443 4.477 1.168 0.592 0.226 0.342 0.112 282 chr10 135088016 135094461 + 0 NA promoter-TSS (NM_001164489) promoter-TSS (NM_001164489) -831 NM_001164490 101 Hs.501574 NM_001109 ENSG00000151651 ADAM8 CD156|CD156a|MS2 ADAM metallopeptidase domain 8 protein-coding 2.453 1.450 0.953 2.580 4.378 1.820 0.908 1.619 4.922 2.196 3.395 1.679 1.887 2.134 1.758 5.188 0.134 1.254 0.124 0.085 1.508 1.323 0.150 0.425 5.977 0.392 0.156 0.457 0.475 0.213 0.774 0.024 2.697 6.307 0.517 1.064 0.986 0.372 0.977 4.248 0.259 0.102 1420 chr3 168129795 168143409 + 0 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) -133040 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 0.568 0.069 0.578 0.207 0.373 0.060 0.436 0.404 1.515 0.659 6.233 0.451 0.145 0.199 0.740 0.161 0.191 0.037 0.005 0.011 0.043 0.035 0.047 0.031 0.033 0.090 0.096 0.030 0.062 0.040 0.041 0.369 0.027 0.036 0.037 0.017 0.012 0.017 0.017 0.007 253 chr10 63656290 63665584 + 0 NA promoter-TSS (NM_032199) promoter-TSS (NM_032199) -76 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 3.806 3.599 1.012 0.978 2.797 6.692 2.994 1.168 6.771 5.429 3.772 2.034 1.002 2.091 3.557 3.040 2.701 4.117 1.514 0.865 2.583 2.556 0.056 2.009 2.121 1.045 0.717 1.814 2.966 1.769 1.890 2.606 2.889 1.525 6.437 2.155 1.709 3.227 3.568 2.332 0.726 0.713 338 chr11 65374790 65384200 + 0 NA intron (NM_002419, intron 1 of 9) intron (NM_002419, intron 1 of 9) 2225 NM_002419 4296 Hs.502872 NM_002419 ENSG00000173327 MAP3K11 MEKK11|MLK-3|MLK3|PTK1|SPRK mitogen-activated protein kinase kinase kinase 11 protein-coding 2.468 2.882 0.842 0.762 2.601 2.697 1.776 0.997 5.196 4.084 2.731 1.407 1.086 2.345 3.210 2.074 1.165 1.482 1.884 1.740 1.752 1.775 2.234 2.124 7.844 3.534 1.879 1.883 2.242 3.465 3.644 1.024 2.510 4.216 3.418 1.321 2.326 3.727 1.513 1.577 1.156 0.764 653 chr15 74272794 74290674 + 0 NA intron (NM_001256677, intron 3 of 7) MIRb|SINE|MIR 2955 NM_001256672 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 1.748 2.513 0.301 2.599 3.997 0.660 2.047 1.259 2.231 0.778 0.998 1.450 2.116 5.068 1.201 3.223 0.541 3.059 0.207 0.404 3.264 3.258 0.642 0.880 1.067 0.801 0.517 1.010 5.629 0.606 2.908 0.666 1.462 1.280 2.024 1.012 0.264 0.703 1.979 2.176 0.613 0.315 205 chr1 222129946 222153776 + 0 NA Intergenic HERVH-int|LTR|ERV1 -127853 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 5.524 0.341 0.310 1.466 3.095 0.048 1.133 3.944 3.474 0.713 2.708 2.592 0.520 8.923 2.651 2.175 0.808 1.557 0.046 0.061 4.259 4.574 0.025 0.831 0.213 0.114 0.059 3.503 0.364 0.396 0.185 0.304 1.715 2.840 0.380 4.123 0.288 0.066 3.312 0.108 0.135 0.075 1511 chr5 371586 379962 + 0 NA intron (NM_020731, intron 3 of 11) intron (NM_020731, intron 3 of 11) 67501 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 0.651 1.677 0.066 0.379 1.045 0.121 0.096 0.102 10.618 1.705 1.417 0.392 1.214 0.039 0.138 1.407 0.080 2.407 5.082 0.116 0.811 0.354 0.104 1.086 0.198 1.540 0.748 0.467 0.346 0.949 0.956 0.804 2.184 2.225 0.026 0.044 0.501 0.188 0.446 0.773 3.688 3.937 495 chr12 118488346 118501516 + 0 NA intron (NM_001278557, intron 1 of 8) intron (NM_001278557, intron 1 of 8) 4085 NM_001278558 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 3.945 3.164 1.882 0.793 1.992 2.787 1.920 1.790 4.758 2.077 1.754 1.043 1.578 1.654 2.229 4.089 1.796 2.992 2.567 1.306 3.285 3.576 1.926 2.982 2.371 3.433 1.505 1.723 7.164 4.904 3.199 1.611 2.741 2.540 3.660 1.694 1.348 2.335 1.959 1.882 2.602 1.852 1713 chr6 138128217 138133771 + 0 NA Intergenic Intergenic -57331 NM_006290 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 0.591 1.330 2.263 2.855 1.113 3.804 3.118 2.529 0.568 0.546 1.018 1.279 6.886 1.091 2.800 0.139 1.196 0.090 0.025 3.196 2.962 0.172 7.951 4.524 2.883 1.580 4.878 1.620 0.463 1.020 0.625 1.109 0.923 0.235 0.728 0.420 1.020 0.768 1.527 0.052 0.019 1080 chr19 50140719 50146685 + 0 NA promoter-TSS (NM_006270) promoter-TSS (NM_006270) -302 NM_006270 6237 Hs.515536 NM_006270 ENSG00000126458 RRAS - related RAS viral (r-ras) oncogene homolog protein-coding 7.921 9.421 2.609 2.185 5.547 8.360 7.236 2.858 8.737 6.698 6.467 3.335 2.327 3.931 6.824 4.057 4.816 5.729 2.296 2.509 2.594 4.208 2.056 5.735 14.573 6.987 2.484 3.176 5.262 9.622 5.532 4.133 3.150 6.988 2.232 4.423 6.392 8.265 4.058 5.451 5.048 4.026 881 chr17 48702657 48787162 + 0 NA intron (NM_003786, intron 11 of 30) intron (NM_003786, intron 11 of 30) 32691 NM_001144070 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 0.961 4.105 0.251 1.351 2.633 2.488 1.824 1.286 nan 2.529 2.128 1.101 1.514 2.048 2.436 4.102 0.681 2.744 0.618 0.138 2.887 2.893 0.368 3.637 3.796 1.930 0.920 1.665 2.351 6.223 2.019 1.954 2.693 1.791 1.564 1.378 1.809 2.157 1.256 1.183 0.824 0.548 972 chr19 1744848 1749425 + 0 NA Intergenic MIR|SINE|MIR -6526 NM_001080488 390874 Hs.654347 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 5.816 0.269 1.530 1.965 0.042 2.528 3.323 6.327 2.800 0.370 2.077 0.880 6.530 3.646 4.394 0.019 1.388 0.045 0.646 0.477 0.111 0.430 14.824 0.323 0.152 0.625 0.241 1.139 0.344 0.449 5.270 4.078 0.119 3.691 0.217 2.460 7.469 3.377 7.269 5.088 1023 chr19 38787222 38798498 + 0 NA Intergenic AluSx|SINE|Alu -1941 NM_033520 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 4.889 2.317 2.410 2.343 4.757 3.427 5.484 2.346 3.854 2.420 2.230 2.570 2.428 2.564 2.666 4.356 2.764 0.906 0.062 0.071 3.982 4.865 2.171 0.660 8.467 12.961 5.702 2.685 2.316 7.448 3.195 1.313 1.516 8.498 5.338 1.989 5.527 1.848 2.440 1.403 2.288 2.147 912 chr17 76870703 76883501 + 0 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 22197 NM_001243540 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 3.764 3.472 0.524 1.317 2.575 0.478 1.776 1.644 3.574 0.937 0.237 2.694 2.346 1.159 0.798 4.795 1.249 1.746 0.040 0.087 2.372 2.314 2.572 1.864 3.942 2.116 0.851 1.325 6.004 2.455 2.743 0.117 1.677 4.779 0.260 1.531 1.278 0.332 1.567 0.594 2.984 2.673 1227 chr20 30421473 30434476 + 0 NA Intergenic Intergenic 5446 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 1.221 0.239 0.029 0.363 0.399 0.105 0.182 0.106 nan 0.272 0.211 0.569 0.769 0.116 0.174 0.387 0.396 4.462 0.062 0.150 1.814 0.857 0.229 0.327 0.397 0.304 0.165 0.265 1.229 0.713 3.547 0.060 0.180 0.341 1.087 0.114 0.065 0.345 0.498 0.451 0.040 0.023 1583 chr5 139014449 139055740 + 0 NA intron (NM_001317205, intron 1 of 2) intron (NM_001317205, intron 1 of 2) -4046 NM_001317206 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 2.929 3.374 0.063 0.771 1.791 0.061 0.299 0.340 7.654 3.420 2.104 1.143 0.914 0.989 2.229 1.767 2.504 1.586 1.543 0.333 2.239 2.133 0.411 1.569 3.491 1.360 0.631 0.376 2.972 1.756 0.229 0.318 2.432 2.151 0.158 1.177 3.107 0.563 0.794 0.793 1.214 1.052 578 chr14 61081695 61093115 + 0 NA Intergenic AluSz|SINE|Alu -18529 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 0.310 0.144 0.071 0.029 0.244 0.129 0.322 0.258 7.244 1.660 4.898 0.373 0.113 0.565 0.254 0.102 0.034 0.256 1.017 0.058 0.712 0.391 0.020 0.061 0.130 0.122 0.061 0.281 0.380 0.239 0.106 0.181 0.201 0.111 0.056 0.101 0.284 0.198 0.186 0.379 0.020 0.017 1419 chr3 166546682 166551735 + 0 NA Intergenic Intergenic -67263 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 0.363 0.062 6.261 0.075 0.070 0.100 0.361 0.248 0.477 0.158 4.157 0.088 0.095 0.556 0.094 0.224 0.057 0.143 0.067 0.088 0.029 0.192 0.091 0.012 0.031 0.073 0.079 0.029 0.037 0.108 0.168 0.042 0.042 0.314 0.045 0.034 0.057 0.030 0.044 0.012 1357 chr3 5014241 5071118 + 0 NA Intergenic MIR|SINE|MIR -21033 NR_125915 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2.045 1.169 0.388 1.144 2.360 2.642 4.354 1.994 7.318 3.429 2.407 2.187 1.091 1.825 0.719 2.119 1.243 3.030 0.337 1.196 0.997 0.906 0.189 2.025 3.370 1.541 0.826 1.190 1.699 3.781 2.084 1.181 2.105 2.852 2.659 1.074 0.437 2.675 1.269 2.043 1.417 0.898 1085 chr19 54481457 54547917 + 0 NA intron (NM_145814, intron 3 of 3) AluSx|SINE|Alu 19145 NM_145815 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium voltage-gated channel auxiliary subunit gamma 6 protein-coding 6.766 1.491 0.134 0.260 0.469 2.069 0.444 0.224 0.349 0.110 0.180 0.145 0.137 0.028 1.887 0.613 0.074 2.263 0.041 0.089 0.324 0.268 0.072 0.961 1.296 1.698 0.714 0.189 0.512 4.473 1.112 0.057 0.474 0.363 0.963 0.040 0.146 1.324 0.725 0.409 1.600 1.117 531 chr13 74017767 74049950 + 0 NA Intergenic Intergenic -104523 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.163 0.119 0.019 0.041 0.072 0.036 0.080 0.145 4.708 1.342 0.502 0.252 0.037 0.224 0.266 0.276 0.030 0.189 0.050 0.026 0.137 0.038 0.020 0.087 0.175 0.045 0.043 0.153 0.096 0.369 0.025 0.264 0.403 0.044 0.031 0.293 0.472 0.030 0.052 0.090 0.016 0.010 763 chr16 86750490 86757605 + 0 NA TTS (NR_135181) TTS (NR_135181) 1518 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LOC101928614 - uncharacterized LOC101928614 ncRNA 0.264 0.044 0.060 0.065 0.057 0.134 0.067 0.070 0.071 0.083 0.077 0.269 0.156 0.027 0.286 0.068 0.020 0.174 0.010 0.020 0.054 0.840 0.586 0.132 0.086 0.126 0.170 0.186 6.959 0.112 0.050 0.368 0.293 0.081 0.041 0.022 0.213 0.008 557 chr14 32541920 32559185 + 0 NA intron (NM_001173, intron 1 of 6) intron (NM_001173, intron 1 of 6) 4057 NM_001030055 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 1.802 1.226 7.250 0.660 2.362 0.442 3.122 1.209 10.407 8.748 2.750 0.958 0.765 1.150 1.503 1.311 0.836 2.374 0.619 1.365 1.289 1.319 0.512 1.117 1.670 1.105 0.631 1.588 1.522 1.886 1.021 1.405 1.540 2.381 3.766 1.075 0.716 1.699 2.813 1.508 0.704 0.417 680 chr16 628426 647472 + 0 NA Intergenic AluSx|SINE|Alu -1408 NM_001172663 57799 Hs.459630 NM_021168 ENSG00000197562 RAB40C RARL|RASL8C RAB40C, member RAS oncogene family protein-coding 1.947 2.356 0.263 0.417 1.603 1.133 1.903 0.403 8.938 3.559 2.277 0.646 0.460 0.976 1.559 1.186 0.667 0.616 1.566 0.460 0.862 1.000 1.273 1.291 1.230 0.857 0.408 1.809 0.619 1.856 1.271 1.437 1.535 2.170 0.939 0.920 1.433 2.087 1.041 0.517 0.708 0.438 1383 chr3 55509987 55526157 + 0 NA intron (NM_003392, intron 1 of 4) intron (NM_003392, intron 1 of 4) -2646 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 0.058 3.203 0.552 0.079 0.071 0.889 0.006 0.630 0.627 1.950 0.409 0.834 0.047 1.385 0.088 0.549 0.644 0.043 0.039 0.023 0.109 2.932 0.074 0.531 0.300 0.090 6.473 0.403 0.026 0.170 0.998 0.087 0.813 0.874 0.478 0.773 0.127 2.243 2.226 2.266 213 chr1 228726604 228785169 + 0 NA promoter-TSS (NR_106988).6 promoter-TSS (NR_106988).6 -828 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 1.455 0.757 3.331 1.106 2.430 0.822 1.478 0.779 4.064 1.867 0.601 1.124 0.443 0.627 0.401 3.065 2.210 1.695 0.891 5.429 1.683 3.121 1.269 3.477 3.815 4.587 2.986 0.331 1.216 4.375 4.971 1.026 1.460 1.972 2.094 1.211 1.246 5.043 6.996 1.468 0.599 0.471 1145 chr2 95939148 95945452 + 0 NA intron (NM_001165977, intron 4 of 23) intron (NM_001165977, intron 4 of 23) 2104 NM_001165978 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 0.464 0.062 0.081 3.127 7.793 0.057 1.616 1.343 8.023 2.591 2.384 5.956 0.056 3.113 11.212 6.399 1.240 0.102 0.016 0.065 0.997 0.659 0.058 0.086 0.626 0.220 0.195 1.141 1.029 0.116 0.158 0.263 5.951 3.619 0.043 2.334 2.073 0.229 2.660 0.896 0.082 0.057 1292 chr21 34771974 34779479 + 0 NA 5' UTR (NM_005534, exon 1 of 7) 5' UTR (NM_005534, exon 1 of 7) 524 NM_001329128 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 1.388 1.821 3.007 0.681 2.434 1.485 1.939 0.648 4.110 2.928 2.029 0.314 0.474 0.901 1.731 1.229 1.787 1.915 1.394 2.234 1.707 1.478 1.876 1.019 6.884 1.752 1.018 0.481 0.934 2.733 7.069 1.496 1.956 2.420 2.160 0.978 1.767 8.692 1.777 0.738 0.867 0.405 66 chr1 55840205 55852608 + 0 NA Intergenic Intergenic 155092 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.064 0.192 0.020 0.137 0.216 0.295 0.162 0.581 nan 0.111 0.273 0.167 0.301 0.660 0.163 3.566 0.023 0.563 0.024 0.023 0.849 0.205 0.118 0.139 0.517 0.267 0.320 0.415 0.221 0.849 0.280 0.662 0.427 0.117 0.945 0.218 0.433 0.351 0.434 0.361 0.037 0.016 1147 chr2 100261227 100289379 + 0 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -168785 NM_001321458 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 0.048 0.067 0.002 0.054 0.052 0.087 0.102 0.011 0.054 0.066 0.083 0.036 0.315 0.023 0.089 0.025 0.031 2.824 0.025 0.015 0.007 0.015 0.058 0.164 0.196 0.041 0.025 0.036 0.903 0.049 0.046 0.011 0.030 0.068 0.029 0.070 0.029 0.099 0.022 0.491 0.038 0.041 1819 chr7 148579819 148583069 + 0 NA promoter-TSS (NM_004456) promoter-TSS (NM_004456) -3 NM_001203248 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 7.347 7.575 1.923 2.330 8.571 3.728 11.106 1.653 10.922 4.870 9.930 2.155 1.644 2.100 5.883 4.894 1.965 3.208 2.402 4.146 4.406 6.163 5.282 5.979 10.518 5.257 2.501 3.859 7.525 7.488 8.168 4.823 5.350 13.088 8.394 2.181 4.598 14.319 6.003 3.330 4.526 3.340 1457 chr4 50227 55838 + 0 NA promoter-TSS (NM_001039127) promoter-TSS (NM_001039127) -147 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 0.784 5.671 1.634 2.306 8.364 0.124 1.473 0.563 2.342 1.176 0.744 2.061 0.459 1.024 0.593 1.697 0.272 0.870 0.697 1.185 0.665 0.607 0.105 0.814 1.938 1.579 0.796 0.551 1.460 1.999 3.379 2.662 0.700 6.182 1.250 0.391 1.363 0.508 0.848 0.778 0.144 0.063 1034 chr19 41100196 41122771 + 0 NA exon (NM_003573, exon 6 of 34) exon (NM_003573, exon 6 of 34) 4206 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 1.067 3.444 0.324 1.232 2.566 1.289 1.067 0.546 nan 2.106 1.085 0.946 0.800 1.021 0.792 1.166 0.423 2.076 0.992 0.449 1.334 1.198 1.805 1.081 2.332 0.459 0.332 0.429 0.980 3.419 4.834 1.146 0.823 3.971 0.529 0.909 0.726 3.733 0.349 1.023 0.296 0.140 901 chr17 73520184 73530164 + 0 NA intron (NM_004524, intron 1 of 24) AluSg|SINE|Alu 3391 NM_004524 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL2, scribble cell polarity complex component protein-coding 2.512 0.430 2.354 1.221 3.515 0.235 2.550 1.357 5.983 3.419 2.300 0.545 0.175 2.253 1.996 1.033 0.564 0.120 0.762 0.208 0.782 0.578 1.251 0.359 0.706 0.283 0.234 0.807 0.190 2.377 0.967 0.943 1.667 7.312 0.371 1.213 2.991 1.175 0.221 0.122 0.046 0.041 971 chr19 1465004 1480619 + 0 NA TTS (NM_152482) TTS (NM_152482) 6417 NM_152482 148223 Hs.532840 NM_152482 ENSG00000119559 C19orf25 - chromosome 19 open reading frame 25 protein-coding 0.506 0.542 0.123 0.376 0.725 0.522 0.818 0.501 1.791 1.206 0.545 0.253 0.212 0.467 0.414 0.935 0.147 0.478 0.649 0.240 0.650 0.573 0.624 0.601 2.022 0.604 0.265 0.284 0.538 0.615 1.880 1.525 0.442 1.081 0.662 0.291 1.096 4.911 1.499 0.365 0.417 0.288 637 chr15 63765259 63811441 + 0 NA Intergenic Intergenic -8360 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 0.853 1.221 1.067 0.600 0.948 1.068 0.787 0.719 4.891 2.606 1.518 0.994 0.425 0.981 0.803 1.389 0.172 1.203 0.533 0.741 0.831 0.655 0.317 1.539 1.261 0.754 0.346 0.542 0.974 3.473 0.480 1.360 3.083 1.061 0.930 0.969 1.446 0.449 0.771 0.412 0.292 0.245 1942 chr9 75048244 75062127 + 0 NA Intergenic AluSc|SINE|Alu -75022 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 0.528 0.718 0.067 1.544 2.106 0.373 1.505 1.680 3.143 1.445 0.720 1.664 1.165 0.911 0.947 6.531 0.648 1.119 0.026 0.010 2.143 1.461 0.447 0.164 2.317 1.725 0.910 1.567 1.671 1.216 1.335 0.159 1.397 1.723 1.042 0.858 1.038 0.310 0.812 1.236 0.632 0.402 371 chr11 96032043 96077611 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -19775 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 1.933 1.496 3.288 0.649 1.712 0.350 2.772 1.583 3.143 1.324 2.967 1.432 0.853 3.861 4.365 2.569 1.014 1.901 0.074 0.039 3.374 2.222 0.675 1.148 1.757 0.695 0.432 2.243 3.789 0.489 1.117 0.305 1.223 1.487 4.193 0.716 0.978 0.112 0.840 0.699 0.595 0.743 1338 chr22 37952602 37968105 + 0 NA intron (NM_152243, intron 1 of 2) intron (NM_152243, intron 1 of 2) 3882 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 6.553 1.278 0.073 1.197 2.817 1.697 4.421 1.117 7.846 3.593 3.182 1.151 0.562 1.244 3.188 1.881 1.245 1.385 0.768 0.761 0.445 0.364 0.162 1.216 1.507 1.575 0.749 0.474 0.553 2.068 1.037 3.285 1.736 4.602 2.026 0.796 1.651 3.119 1.430 0.849 0.520 0.322 2002 chrX 41189143 41195152 + 0 NA promoter-TSS (NR_126093) promoter-TSS (NR_126093) -414 NM_001356 1654 Hs.728563 NM_001356 ENSG00000215301 DDX3X CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102 DEAD-box helicase 3, X-linked protein-coding 2.810 4.653 3.143 1.512 5.861 3.474 3.663 2.670 4.037 2.435 6.967 3.031 1.566 2.865 2.480 2.261 2.023 3.129 1.436 4.834 3.092 4.239 2.372 7.255 16.516 9.909 4.282 6.366 5.849 7.016 5.300 2.202 5.875 9.239 4.600 2.748 3.375 4.028 5.486 2.811 3.888 2.624 1310 chr21 45126090 45162734 + 0 NA intron (NM_003681, intron 1 of 10) intron (NM_003681, intron 1 of 10) 5434 NM_003681 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 2.372 0.995 2.866 0.715 1.896 4.155 1.748 1.049 3.349 1.586 2.384 0.914 0.635 1.494 2.354 4.549 1.071 0.590 0.216 0.108 1.645 1.620 1.093 0.699 1.474 0.743 0.459 0.973 1.597 2.313 0.981 0.801 1.581 3.096 0.584 1.449 1.450 0.640 0.832 0.888 1.664 0.999 538 chr13 107172041 107189090 + 0 NA intron (NM_004093, intron 1 of 4) intron (NM_004093, intron 1 of 4) 6823 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 1.239 1.352 1.579 1.691 4.321 0.018 0.467 0.587 4.685 2.570 0.924 0.977 0.464 0.602 2.938 1.398 0.011 0.604 0.146 0.008 1.528 1.400 0.017 0.114 1.596 0.142 0.082 0.699 0.568 0.138 0.535 0.096 0.106 3.258 0.325 0.316 0.348 0.151 0.917 1.844 0.020 0.041 1215 chr20 4082864 4119440 + 0 NA Intergenic Intergenic -28274 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 0.523 3.123 0.024 0.481 0.779 1.867 0.229 0.496 3.900 0.666 0.147 1.368 0.574 0.721 0.598 0.932 0.313 1.392 0.225 0.106 1.520 0.898 0.078 3.745 0.547 0.443 0.287 0.322 0.967 5.455 1.129 0.731 3.187 0.304 0.430 1.482 0.552 0.453 1.469 1.061 1.086 0.697 1061 chr19 46383079 46391224 + 0 NA 3' UTR (NM_015649, exon 1 of 1) 3' UTR (NM_015649, exon 1 of 1) 2277 NM_015649 26145 Hs.515477 NM_015649 ENSG00000170604 IRF2BP1 - interferon regulatory factor 2 binding protein 1 protein-coding 3.822 2.764 0.471 0.788 2.463 5.680 1.688 0.440 nan 2.514 3.045 0.451 0.886 0.939 2.142 0.909 1.291 1.542 5.983 0.493 0.526 0.603 1.831 1.378 3.028 1.125 0.603 0.518 0.748 6.482 2.529 5.397 1.856 2.730 0.624 2.240 1.803 5.869 0.835 1.000 0.566 0.288 289 chr11 808107 811965 + 0 NA promoter-TSS (NM_001004) promoter-TSS (NM_001004) 100 NM_001004 6181 Hs.437594 NM_001004 ENSG00000177600 RPLP2 D11S2243E|LP2|P2|RPP2 ribosomal protein lateral stalk subunit P2 protein-coding 4.696 6.723 0.999 1.948 4.601 3.396 3.553 2.035 10.555 7.310 4.896 1.888 2.591 4.376 4.376 6.495 1.287 3.300 3.226 3.558 3.048 3.733 4.163 6.917 10.117 8.501 4.549 1.669 3.544 5.463 5.401 5.045 3.284 8.217 7.696 3.175 2.719 7.539 4.220 3.489 3.055 2.266 1935 chr9 35904100 35911425 + 0 NA TTS (NM_001039792) TTS (NM_001039792) 1573 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 0.803 4.437 0.745 1.707 2.009 0.914 4.362 2.978 11.235 2.559 10.465 3.735 2.983 2.810 1.062 7.092 2.295 3.965 0.096 0.019 6.269 8.088 1.348 8.935 1.210 6.130 2.443 2.706 6.654 5.010 3.059 0.696 2.703 1.493 6.136 0.550 0.123 0.794 4.317 3.977 3.365 1.896 193 chr1 184019616 184032263 + 0 NA intron (NM_001127394, intron 3 of 3) L1ME3F|LINE|L1 5154 NM_052965 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 2.201 1.101 2.628 0.359 1.042 1.189 1.493 0.825 2.168 1.326 1.176 0.427 0.464 0.692 1.050 0.908 0.470 1.265 0.193 0.777 1.321 1.038 0.741 0.720 0.743 1.289 0.658 0.346 1.411 0.766 0.794 0.561 0.542 0.786 1.953 0.904 0.503 0.689 0.480 0.525 2.022 1.823 736 chr16 57017052 57026198 + 0 NA Intergenic Intergenic -1772 NM_001330552 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 0.441 2.984 2.233 3.919 0.489 6.857 1.139 2.037 0.501 0.687 1.958 1.343 10.257 1.274 3.227 0.660 1.495 1.239 0.060 4.825 4.320 0.984 1.616 1.280 0.805 0.647 3.712 1.736 1.521 0.912 4.447 2.091 4.044 3.616 0.362 0.263 0.517 2.616 0.342 0.643 0.272 1999 chrX 39953378 39970063 + 0 NA intron (NM_001123384, intron 1 of 13) CpG-27857 -5001 NM_017745 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 1.733 2.288 1.626 0.376 1.331 3.091 3.288 0.844 3.873 1.919 2.373 0.611 0.767 1.069 2.227 1.562 1.057 1.153 1.749 2.051 1.208 1.386 1.138 2.506 3.892 2.538 1.341 1.192 1.769 5.410 4.189 1.926 2.522 1.852 1.868 1.056 1.790 3.705 0.832 1.378 1.212 0.742 1041 chr19 42688541 42726333 + 0 NA intron (NR_073049, intron 3 of 4) L2c|LINE|L2 14507 NM_001270615 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 1.414 1.628 0.133 1.084 2.187 0.414 1.050 0.725 nan 1.592 0.978 0.805 1.043 1.487 1.092 1.618 0.484 1.049 0.635 0.196 1.034 0.953 0.782 0.392 1.089 0.710 0.329 0.727 0.669 1.506 3.064 0.612 0.809 1.718 0.337 1.084 1.127 0.698 0.274 0.613 0.282 0.169 1045 chr19 44060404 44071021 + 0 NA intron (NM_006297, intron 2 of 16) MIRb|SINE|MIR 14018 NM_006297 7515 Hs.98493 NM_006297 ENSG00000073050 XRCC1 RCC X-ray repair cross complementing 1 protein-coding 0.265 0.716 0.029 0.107 0.448 0.529 0.090 0.269 nan 0.128 0.234 0.192 0.689 0.021 0.127 0.751 0.098 0.527 0.301 0.026 0.143 0.068 0.320 0.086 1.648 0.222 0.117 0.066 0.324 0.203 5.318 0.029 0.050 0.261 0.052 0.046 0.078 0.247 0.491 0.323 0.374 0.417 201 chr1 211429922 211435166 + 0 NA promoter-TSS (NM_001136224) promoter-TSS (NM_001136224) -164 NM_001136225 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 4.378 5.533 4.191 1.518 3.693 3.521 5.620 3.259 6.503 4.257 5.841 1.672 1.327 3.630 4.016 4.849 2.419 3.604 1.467 6.468 5.376 6.588 3.606 10.582 4.606 5.024 2.022 3.503 6.942 5.355 3.719 5.754 3.426 3.717 3.061 2.881 2.175 4.052 3.753 3.006 3.415 2.057 183 chr1 164598841 164632144 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 86895 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 0.564 1.324 1.027 0.245 0.394 0.047 0.110 0.022 0.992 0.481 0.649 0.062 0.155 0.105 2.355 0.198 0.364 0.536 0.766 0.029 0.204 0.065 0.018 3.356 0.130 0.056 0.056 0.154 0.126 1.377 0.024 0.563 1.287 0.419 0.036 2.600 1.078 0.103 0.736 0.029 0.022 0.028 29 chr1 24688756 24703249 + 0 NA intron (NM_178122, intron 6 of 7) L2b|LINE|L2 -43975 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 1.141 0.279 0.077 0.849 0.786 0.103 0.322 2.277 1.246 0.386 0.627 0.894 0.222 1.401 0.933 2.555 0.139 0.679 0.048 0.055 0.629 0.280 0.121 0.547 0.178 0.113 0.043 0.580 0.180 0.884 0.279 0.376 1.231 1.356 2.554 0.592 2.406 0.382 0.337 0.253 0.083 0.056 1490 chr4 129379901 129390711 + 0 NA intron (NR_125882, intron 1 of 8) intron (NR_125882, intron 1 of 8) 36135 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 0.194 0.279 0.006 0.124 0.137 0.408 0.045 0.078 0.366 0.060 0.125 0.146 0.197 0.096 0.133 0.542 0.018 1.152 0.028 0.038 0.488 0.193 0.049 0.315 0.112 0.056 0.064 0.050 0.998 0.485 0.066 3.008 0.272 0.060 0.042 0.171 0.178 0.027 0.195 0.028 0.011 0.014 1474 chr4 38662804 38678393 + 0 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -4349 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 3.878 2.486 2.608 1.462 4.112 3.370 2.919 0.704 9.697 5.662 3.862 1.594 0.849 2.048 4.586 2.609 1.437 1.030 2.605 0.959 1.275 1.331 1.236 2.300 4.953 2.640 1.222 1.264 2.689 4.023 3.638 2.916 2.074 4.481 3.329 2.329 3.770 2.288 1.060 0.995 1.219 1.148 1395 chr3 101417982 101424897 + 0 NA Intergenic AluJr|SINE|Alu -9839 NR_002941 285359 Hs.720825 NR_002941 PDCL3P4 - phosducin-like 3 pseudogene 4 pseudo 0.429 0.201 5.751 0.878 1.126 0.036 4.490 4.627 6.001 3.588 4.561 0.655 0.053 3.645 0.431 4.736 0.028 0.252 0.043 0.100 2.043 1.957 0.095 0.157 0.453 0.795 0.464 4.582 0.331 0.447 0.122 0.080 0.809 3.097 0.280 1.417 0.167 0.118 0.871 0.066 0.033 0.028 164 chr1 155615751 155623696 + 0 NA Intergenic Intergenic 29323 NR_132762 106633810 NR_132762 SCARNA26A - small Cajal body-specific RNA 26A ncRNA 0.742 1.494 1.586 1.784 4.264 1.746 2.060 2.931 5.421 1.399 3.326 3.400 1.731 2.472 1.720 5.643 1.312 1.353 0.163 0.035 3.211 3.010 0.318 4.529 0.953 1.466 0.868 2.652 1.398 1.152 1.008 0.476 1.508 9.392 5.941 0.862 2.034 0.840 2.993 1.343 1.558 0.980 1979 chr9 130888588 130896555 + 0 NA non-coding (NR_024425, exon 1 of 1) non-coding (NR_024425, exon 1 of 1) 1763 NR_024425 389791 Hs.632678 NM_001013652 ENSG00000232850 PTGES2-AS1 - PTGES2 antisense RNA 1 (head to head) ncRNA 2.193 2.888 0.989 1.060 3.376 1.091 2.633 0.520 4.502 3.676 1.548 1.007 0.622 1.622 2.720 1.488 0.876 1.255 5.271 1.185 1.339 1.714 1.630 2.067 4.134 2.920 1.449 1.384 1.678 2.990 3.087 1.657 2.836 2.968 1.648 1.091 3.160 3.402 1.907 1.101 1.865 0.913 895 chr17 66504783 66512556 + 0 NA 5' UTR (NM_001276289, exon 1 of 12) 5' UTR (NM_001276289, exon 1 of 12) 149 NM_002734 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 2.688 4.044 0.933 0.999 2.331 3.579 1.705 0.770 9.255 8.044 3.410 1.335 1.958 1.575 1.663 2.069 1.132 1.328 2.893 1.462 1.718 2.091 1.908 5.386 5.088 2.273 0.794 0.703 2.996 3.676 3.787 4.420 2.022 4.911 0.906 1.449 1.611 4.696 1.667 1.681 1.548 0.720 1945 chr9 94181163 94196724 + 0 NA Intergenic Intergenic -2035 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 0.939 1.875 0.210 0.974 1.917 0.781 2.651 0.622 4.274 2.547 0.931 1.232 0.614 1.255 1.014 2.210 0.812 1.196 0.071 0.071 1.674 0.865 0.948 0.393 2.818 0.533 0.449 0.478 1.471 1.397 1.543 1.169 1.363 2.180 1.395 0.512 0.587 1.097 1.149 0.499 0.177 0.111 1886 chr8 103763739 103772327 + 0 NA Intergenic MIRb|SINE|MIR -99903 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 0.427 2.483 0.007 2.231 3.434 0.091 1.130 2.815 1.914 0.414 0.395 3.416 0.918 1.826 1.213 5.461 1.102 1.627 0.095 2.169 1.495 0.128 0.350 0.139 0.308 0.219 2.400 2.979 0.753 1.032 0.091 2.417 2.078 0.194 0.544 0.686 0.379 1.278 1.062 0.020 1094 chr19 58304011 58318356 + 0 NA Intergenic HERVIP10F-int|LTR|ERV1 15098 NM_024762 79818 Hs.560727 NM_024762 ENSG00000178935 ZNF552 - zinc finger protein 552 protein-coding 0.391 0.139 1.424 0.676 2.174 0.070 1.029 0.736 3.321 1.528 5.718 0.570 0.379 0.707 1.098 0.759 0.746 0.861 0.062 0.038 0.866 0.657 0.076 0.070 0.183 0.160 0.076 2.032 0.517 0.068 0.283 0.082 0.037 2.282 0.244 0.392 0.052 0.056 1.154 0.947 0.060 0.018 1254 chr20 45336518 45344221 + 0 NA intron (NM_030777, intron 1 of 4) intron (NM_030777, intron 1 of 4) 2090 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATS|GLUT10 solute carrier family 2 member 10 protein-coding 1.439 0.427 0.347 0.049 0.123 0.068 0.506 0.041 2.952 0.789 1.120 0.188 0.612 0.352 0.739 0.459 0.669 0.096 0.066 0.254 0.847 0.690 0.559 0.112 0.114 0.751 0.403 0.199 0.260 0.646 0.071 0.308 2.266 0.102 0.097 0.175 5.564 1.711 0.041 0.363 0.232 0.158 1813 chr7 139357118 139376260 + 0 NA intron (NM_001113239, intron 2 of 14) intron (NM_001113239, intron 2 of 14) 111004 NM_001113239 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 0.536 2.154 0.013 2.155 2.866 0.059 3.831 1.611 4.236 1.680 0.291 1.818 2.465 2.180 0.160 3.549 0.095 2.740 1.094 0.022 3.842 4.664 0.053 1.274 4.090 1.141 0.446 3.688 6.487 1.260 2.187 0.065 0.397 2.334 4.883 0.154 0.156 0.116 2.623 1.731 0.087 0.099 1090 chr19 56159110 56169238 + 0 NA 3' UTR (NM_013301, exon 6 of 6) 3' UTR (NM_013301, exon 6 of 6) -1242 NM_001012478 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 5.784 5.465 2.736 0.786 3.368 5.009 3.267 0.959 5.173 3.706 4.066 1.652 2.121 4.731 3.557 2.479 1.937 3.143 2.723 2.382 1.026 1.328 4.283 3.076 5.727 2.952 0.941 2.049 1.926 6.041 3.783 3.199 1.995 3.576 3.165 2.654 2.370 5.281 3.302 1.866 1.973 1.282 1076 chr19 49427154 49437571 + 0 NA Intergenic AluY|SINE|Alu -4577 NM_014475 27294 Hs.631555 NM_014475 ENSG00000104808 DHDH 2DD|HUM2DD dihydrodiol dehydrogenase protein-coding 1.464 0.716 0.006 0.546 0.328 0.157 1.795 1.164 nan 0.379 0.416 0.156 0.125 2.485 0.438 0.955 0.055 0.643 0.085 0.093 1.058 0.941 0.042 0.083 0.451 0.225 0.143 0.244 1.024 1.052 0.594 0.667 0.471 0.565 0.995 0.210 0.408 0.425 0.912 0.168 0.216 0.141 524 chr13 45368812 45396939 + 0 NA intron (NR_038433, intron 1 of 2) intron (NR_038433, intron 1 of 2) 891 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 0.282 0.457 0.040 0.384 0.488 0.060 0.212 0.532 4.369 1.126 0.604 0.759 1.233 0.621 1.198 0.651 0.238 1.201 0.164 0.044 1.323 0.787 0.078 0.220 1.128 0.197 0.123 0.362 1.486 0.243 0.287 0.601 0.746 0.412 0.151 0.309 0.135 0.112 0.536 1.646 0.104 0.101 308 chr11 34684957 34691607 + 0 NA Intergenic Intergenic 34271 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.358 0.580 0.341 0.396 0.028 0.408 0.155 3.975 0.664 0.411 0.250 0.032 0.114 1.674 1.060 0.392 0.468 0.030 0.145 0.065 0.011 3.992 0.284 0.073 0.106 0.012 0.150 2.170 0.042 4.327 1.321 0.417 0.014 0.609 1.306 0.323 0.143 0.067 0.017 0.015 304 chr11 15985346 15991886 + 0 NA 3' UTR (NM_017508, exon 15 of 15) 3' UTR (NM_017508, exon 15 of 15) 2551 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 2.471 0.583 0.085 0.202 0.547 0.172 0.425 0.815 9.884 4.021 8.315 1.355 0.432 0.934 1.742 2.040 0.464 1.565 0.182 0.021 1.261 0.786 0.123 5.557 0.465 0.109 0.096 1.827 2.229 1.264 0.111 0.641 3.481 1.778 0.326 1.608 3.117 0.071 0.184 0.677 0.018 0.012 1220 chr20 17535552 17554187 + 0 NA intron (NM_001278608, intron 1 of 9) AluJb|SINE|Alu 4996 NM_001278608 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 1.176 4.739 0.782 0.610 1.558 1.621 1.019 2.427 6.434 3.216 5.580 3.366 1.107 2.026 3.600 3.624 1.603 2.050 1.319 1.316 4.606 4.227 1.089 4.301 3.476 2.194 1.086 2.439 4.116 3.303 1.888 1.440 2.571 1.868 5.986 1.214 6.477 1.594 2.791 2.515 1.669 1.327 412 chr12 12931709 12977992 + 0 NA Intergenic AluSc|SINE|Alu -11430 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 3.868 0.427 0.673 0.560 1.103 1.247 3.688 2.236 5.095 2.155 3.297 0.688 0.340 1.917 2.688 1.961 0.629 2.287 0.239 0.090 1.945 1.466 0.500 0.863 1.829 0.648 0.312 1.729 2.015 1.877 1.264 0.583 2.040 1.864 2.027 1.102 3.152 1.954 1.106 0.513 0.893 0.453 535 chr13 95362023 95367327 + 0 NA promoter-TSS (NR_046514) promoter-TSS (NR_046514) 122 NM_007084 11166 Hs.187577 NM_007084 ENSG00000125285 SOX21 SOX25 SRY-box 21 protein-coding 0.093 0.045 0.059 2.455 7.025 0.671 0.077 0.061 5.632 3.478 0.331 0.606 0.335 0.018 2.676 0.017 0.035 0.020 0.052 0.300 0.151 0.069 0.102 0.417 0.238 0.250 0.435 0.149 2.010 0.512 1.874 1.386 5.565 3.309 1.403 0.888 1.104 0.367 0.044 0.033 0.019 410 chr12 12027650 12040238 + 0 NA intron (NM_001987, intron 5 of 7) AluJr|SINE|Alu -189934 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 2.537 0.874 0.237 1.543 2.617 0.116 2.537 1.885 3.178 0.997 1.926 1.232 0.197 2.395 1.918 1.851 0.307 0.175 3.658 0.022 0.579 0.339 0.029 0.047 1.242 0.038 0.025 3.059 0.310 0.764 0.124 0.469 0.723 2.573 0.111 0.546 1.176 0.198 0.818 0.543 0.027 0.037 1414 chr3 158434725 158451214 + 0 NA intron (NM_002888, intron 1 of 3) intron (NM_002888, intron 1 of 3) 7306 NM_002888 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 1.514 0.607 0.030 0.215 0.448 3.182 0.235 0.200 0.781 0.239 0.213 0.700 0.309 0.265 2.101 1.342 0.435 2.242 0.104 0.042 0.381 0.179 0.415 3.309 0.341 0.300 0.176 0.088 0.109 3.693 0.367 1.051 4.612 0.230 0.812 0.200 3.111 1.894 0.556 0.866 0.028 0.018 307 chr11 34640297 34680325 + 0 NA intron (NM_001206616, intron 1 of 8) intron (NM_001206616, intron 1 of 8) 6300 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 4.057 1.401 0.341 0.763 1.532 0.150 0.569 1.253 4.838 2.018 2.420 0.624 0.364 1.409 4.497 2.017 0.394 1.800 0.063 0.038 2.173 1.442 0.031 4.067 1.660 0.732 0.377 0.701 0.912 4.210 0.039 2.345 1.376 1.158 0.028 1.483 1.369 0.774 0.786 0.593 0.426 0.440 479 chr12 95489996 95515258 + 0 NA intron (NM_018351, intron 9 of 20) intron (NM_018351, intron 9 of 20) -35223 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 2.784 0.626 0.064 0.923 1.704 4.477 2.500 1.300 4.387 2.458 1.524 0.848 0.860 2.116 0.744 2.200 0.197 1.434 0.173 0.016 1.864 1.675 0.768 0.208 1.006 1.064 0.491 1.884 1.096 0.951 1.072 0.234 0.645 1.678 2.613 0.275 2.902 1.041 0.320 0.257 1.092 1.041 677 chr16 119119 136786 + 0 NA promoter-TSS (NM_001015052) promoter-TSS (NM_001015052) -217 NM_002434 4350 Hs.459596 NM_002434 ENSG00000103152 MPG AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg N-methylpurine DNA glycosylase protein-coding 1.876 3.190 0.382 0.807 2.197 2.292 2.342 0.613 6.747 3.957 1.419 0.933 1.215 1.099 1.685 2.029 1.596 1.253 1.787 0.431 1.525 1.453 1.957 2.319 1.365 1.672 0.823 0.951 1.115 2.295 1.712 0.663 2.115 2.385 2.256 0.943 1.670 1.535 0.908 1.608 1.292 0.806 838 chr17 37782432 37790321 + 0 NA intron (NM_181505, intron 4 of 6) intron (NM_181505, intron 4 of 6) 1625 NM_001242464 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding 4.900 0.244 0.062 0.218 0.697 0.089 0.177 0.214 4.561 1.222 9.137 0.117 0.061 0.167 0.158 0.305 0.025 0.095 0.742 0.052 0.050 0.046 0.084 0.124 0.338 0.053 0.079 0.174 0.139 0.336 0.141 0.040 0.118 0.426 0.024 0.031 0.118 0.679 0.101 0.048 0.044 0.006 1779 chr7 74303880 74308662 + 0 NA promoter-TSS (NR_027775) promoter-TSS (NR_027775) 460 NR_040584 442582 Hs.632310 NM_001025202 STAG3L2 STAG3L1|STAG3L2P|STAG3L3 stromal antigen 3-like 2 (pseudogene) pseudo 2.123 5.398 1.338 1.031 3.089 3.087 4.708 0.993 4.380 3.086 4.664 1.106 1.125 1.783 3.207 3.516 1.989 3.728 1.419 2.967 2.809 4.050 3.339 3.621 6.399 4.293 2.530 2.682 3.970 5.294 9.745 2.688 2.913 4.573 5.340 3.210 2.297 5.180 3.158 2.654 3.702 2.490 1522 chr5 10653030 10657734 + 0 NA 3' UTR (NM_001164440, exon 4 of 4) 3' UTR (NM_001164440, exon 4 of 4) 90947 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 0.091 0.034 0.027 4.480 5.216 0.051 0.199 0.470 1.465 0.824 0.105 2.357 0.124 0.047 0.495 8.421 0.053 0.196 0.087 0.102 0.046 0.139 0.057 0.336 4.832 1.960 1.468 0.174 0.208 0.255 0.108 0.466 4.615 5.247 0.368 0.123 0.099 2.430 0.791 0.049 0.033 664 chr15 89901544 89946060 + 0 NA intron (NR_133001, intron 3 of 6) L2b|LINE|L2 2529 NR_015411 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 0.089 0.156 0.390 0.136 0.257 0.405 0.532 0.168 4.523 1.014 0.881 0.350 0.048 0.076 0.472 0.178 0.627 0.184 0.562 0.178 0.097 0.088 0.320 0.220 0.234 0.039 0.026 0.083 0.230 0.450 0.572 0.101 0.774 0.218 0.385 0.140 1.297 0.717 0.057 0.055 0.016 0.018 630 chr15 41135036 41174082 + 0 NA Intergenic Intergenic 11928 NM_133639 171177 Hs.447901 NM_133639 ENSG00000104140 RHOV ARHV|CHP|WRCH2 ras homolog family member V protein-coding 0.430 0.226 1.181 0.503 1.387 3.139 0.909 0.383 4.976 2.703 2.310 0.711 0.124 1.171 0.908 1.336 1.200 0.161 0.477 0.039 0.674 0.430 0.200 0.117 1.572 0.113 0.096 0.760 0.171 1.653 0.461 0.254 6.410 2.523 0.178 1.473 3.340 2.019 0.398 0.439 0.044 0.021 709 chr16 12006506 12012015 + 0 NA exon (NM_001130006, exon 1 of 15) exon (NM_001130006, exon 1 of 15) 565 NM_001130006 2935 Hs.528780 NM_002094 ENSG00000103342 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 6.605 4.736 6.159 1.274 4.221 3.136 4.673 1.178 9.331 6.223 4.000 1.323 1.077 3.180 5.058 3.718 3.062 1.772 2.909 0.762 3.043 3.515 2.022 2.333 4.413 2.184 1.333 2.383 2.232 3.455 2.410 5.454 4.708 4.812 3.914 1.435 2.244 2.961 4.433 1.873 1.484 1.130 1260 chr20 48827077 48885825 + 0 NA Intergenic MIR|SINE|MIR -27572 NM_001278655 100506115 Hs.235484 NM_001278655 LINC01272 - long intergenic non-protein coding RNA 1272 protein-coding 2.447 0.820 0.035 0.268 0.320 0.189 0.101 0.163 1.568 0.269 0.422 0.396 0.077 0.381 6.732 0.875 1.578 0.548 0.059 0.056 0.375 0.202 0.115 0.608 3.406 0.213 0.183 0.101 0.747 1.356 0.122 0.086 1.400 0.182 0.091 0.385 1.009 0.720 0.321 0.492 0.039 0.034 23 chr1 17864676 17933801 + 0 NA intron (NM_018125, intron 1 of 28) L2b|LINE|L2 -7810 NM_001319837 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 0.747 0.682 0.061 0.649 1.338 0.196 0.597 0.422 4.192 0.978 1.258 0.721 0.254 1.054 0.833 1.026 0.514 0.615 1.099 0.084 1.232 0.935 0.314 0.128 0.234 0.251 0.162 0.576 0.369 0.668 0.224 1.426 1.138 1.213 0.043 0.431 0.436 0.399 0.454 0.076 0.094 0.077 14 chr1 8848302 8851917 + 0 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 27590 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 0.338 0.048 9.242 0.205 0.082 0.037 0.028 nan 0.845 2.191 0.446 0.061 0.187 0.257 1.448 0.205 0.137 0.038 0.038 0.039 0.034 0.105 0.153 0.043 0.127 0.196 0.158 0.100 0.141 1.756 0.177 0.068 2.312 0.080 0.131 0.066 1870 chr8 81657782 81667464 + 0 NA intron (NM_001033723, intron 2 of 8) MER33|DNA|hAT-Charlie 124393 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.135 0.170 3.728 0.274 0.896 0.500 0.679 0.087 6.302 1.964 4.120 1.221 0.121 0.675 3.466 0.372 1.437 0.824 0.083 0.014 0.469 0.238 0.023 0.085 0.066 0.056 0.032 0.483 0.247 0.572 0.191 0.342 2.622 0.859 0.048 0.853 1.855 0.066 0.138 0.055 0.042 0.021 1687 chr6 50532217 50578088 + 0 NA Intergenic L1MA9|LINE|L1 -126105 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 0.050 0.064 0.041 0.017 0.046 0.025 0.055 0.005 0.260 0.091 0.201 0.045 0.036 0.017 0.078 0.075 0.006 0.032 0.044 2.835 0.004 0.011 0.006 0.046 0.034 0.016 0.005 0.017 0.089 0.011 0.029 0.039 0.019 0.042 0.022 0.029 0.034 0.009 0.021 0.010 0.019 0.010 485 chr12 104605462 104623209 + 0 NA intron (NM_001093771, intron 1 of 16) AluSq2|SINE|Alu 4778 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 0.535 3.499 0.762 0.994 1.842 4.991 1.424 1.116 2.714 0.796 0.532 0.799 0.818 1.551 3.610 4.546 1.141 2.901 0.079 0.024 4.697 5.192 3.780 5.299 6.094 2.173 1.040 1.242 4.683 4.795 1.749 1.670 3.588 1.573 6.128 2.054 5.285 5.170 1.555 1.025 1.295 0.989 1807 chr7 102242991 102257340 + 0 NA intron (NM_001079877, intron 2 of 19) AluSx1|SINE|Alu 7038 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 0.356 2.205 0.098 1.103 1.270 0.101 0.817 0.938 5.419 2.041 1.077 0.667 2.480 0.349 0.604 3.220 0.217 1.893 0.354 0.454 0.977 0.717 1.269 1.458 9.413 0.538 0.425 0.520 0.212 1.976 3.219 0.491 1.024 2.077 0.875 2.580 0.780 2.333 0.661 0.908 0.147 0.067 1259 chr20 48802421 48817674 + 0 NA TTS (NM_001285879) TTS (NM_001285879) -1441 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA 3.984 3.287 0.510 0.355 1.675 2.641 1.594 0.545 4.359 3.226 3.516 0.661 0.814 0.664 6.887 0.988 1.659 1.251 0.673 3.273 0.802 1.020 0.959 5.145 4.987 1.594 0.895 0.722 3.498 4.275 2.129 1.960 3.015 1.797 1.295 1.095 1.836 7.751 1.088 1.863 1.325 0.940 702 chr16 11653212 11658478 + 0 NA intron (NR_024320, intron 1 of 3) AluJo|SINE|Alu 24384 NM_004862 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 0.252 0.311 8.842 0.072 0.523 0.538 0.092 0.081 1.107 0.380 0.108 0.028 0.022 0.064 0.208 0.231 0.288 0.122 0.090 0.132 0.235 0.146 0.469 0.522 0.219 0.032 0.074 0.088 0.087 1.819 0.188 1.698 0.300 0.231 0.035 0.046 0.236 0.210 0.104 0.131 0.131 0.019 999 chr19 17416452 17429706 + 0 NA intron (NM_024050, intron 1 of 4) L2b|LINE|L2 2742 NM_024050 79016 Hs.466154 NM_024050 ENSG00000130311 DDA1 C19orf58|PCIA1 DET1 and DDB1 associated 1 protein-coding 1.256 1.373 0.556 0.851 2.485 2.758 1.708 0.789 nan 1.434 0.929 0.461 0.460 0.884 2.234 2.272 0.783 0.980 0.481 0.467 1.829 1.520 0.942 0.930 3.666 1.731 0.854 1.167 0.660 2.152 2.228 1.985 2.592 2.866 1.155 1.089 1.971 2.574 1.996 0.648 0.491 0.351 276 chr10 115802153 115813038 + 0 NA TTS (NM_000684) TTS (NM_000684) 3789 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.152 0.072 3.583 0.139 0.303 0.035 1.194 0.098 1.875 1.097 0.662 0.309 0.054 0.321 0.097 0.602 0.298 0.039 0.599 0.025 0.598 0.495 0.841 0.228 0.263 0.419 0.298 0.098 0.138 0.411 0.615 0.044 0.245 0.405 4.557 0.155 0.113 0.637 0.224 0.021 0.042 0.018 528 chr13 73725725 73753598 + 0 NA Intergenic AluSz|SINE|Alu 106731 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 1.049 0.192 0.031 0.061 0.110 0.068 0.063 0.106 5.496 1.146 0.344 0.288 0.034 0.208 0.733 0.325 0.168 0.229 0.025 0.015 0.347 0.115 0.045 0.131 0.176 0.035 0.031 0.279 0.118 0.362 0.042 0.090 0.739 0.120 0.033 1.312 0.273 0.067 0.031 0.098 0.012 0.005 491 chr12 112807862 112825866 + 0 NA intron (NM_001109662, intron 1 of 75) intron (NM_001109662, intron 1 of 75) 3032 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12orf51|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 0.910 0.673 1.869 0.230 0.759 0.402 0.683 0.283 1.501 0.925 0.694 0.306 0.151 0.237 0.776 0.807 0.230 0.307 0.217 0.303 0.418 0.266 0.569 0.539 0.419 0.411 0.395 0.259 0.555 0.938 1.127 0.415 0.668 0.873 0.577 0.279 0.540 1.024 0.332 0.134 0.237 0.096 1411 chr3 147084803 147143735 + 0 NA intron (NM_001168378, intron 2 of 4) CpG-19034 -4052 NR_040762 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 0.140 0.132 0.247 0.093 0.132 0.026 0.096 0.009 0.111 0.081 0.077 0.047 0.006 0.039 0.055 0.051 0.008 0.163 0.027 5.459 0.007 0.022 0.177 0.035 0.453 0.030 0.024 0.046 0.143 0.062 0.297 0.034 0.033 0.117 0.019 0.021 0.201 0.426 0.020 0.014 0.016 0.004 868 chr17 43537341 43548450 + 0 NA intron (NR_027782, intron 4 of 10) AluSz6|SINE|Alu 9906 NR_036199 100423004 NR_036199 ENSG00000225190 MIR4315-1 - microRNA 4315-1 ncRNA 4.221 0.848 1.126 0.745 1.201 0.114 0.750 0.659 nan 1.892 3.433 1.299 1.194 0.952 4.080 2.180 2.281 0.656 0.435 0.087 1.319 1.016 0.126 0.442 0.530 0.493 0.203 1.109 0.376 1.472 0.707 0.455 2.623 4.234 2.123 1.323 5.017 0.240 0.519 0.513 0.093 0.092 520 chr13 34908561 34933082 + 0 NA Intergenic Intergenic 294001 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 0.291 0.242 0.031 0.465 0.737 0.008 0.186 0.700 4.656 1.332 0.496 0.759 0.424 0.379 0.693 0.937 0.008 0.932 0.155 0.023 0.608 0.264 0.012 0.073 0.131 0.093 0.099 0.216 1.047 0.299 0.117 0.684 0.811 0.346 0.068 0.549 0.504 0.050 0.090 0.374 0.039 0.045 1771 chr7 73232485 73272389 + 0 NA intron (NM_152559, intron 5 of 5) AluJo|SINE|Alu 4418 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding 1.727 1.855 0.834 0.995 1.637 0.193 4.522 2.126 6.565 2.868 6.052 1.514 1.508 1.954 2.913 4.295 1.170 2.805 1.057 0.069 1.053 0.976 0.178 2.955 1.541 0.472 0.230 3.121 1.802 1.631 1.800 0.682 2.172 2.786 3.088 2.144 2.690 0.659 2.164 0.862 1.272 1.145 622 chr14 105945697 105958537 + 0 NA Intergenic Intergenic -1140 NM_001311 1396 Hs.70327 NM_001311 ENSG00000213145 CRIP1 CRHP|CRIP|CRP-1|CRP1 cysteine rich protein 1 protein-coding 2.427 2.520 2.009 0.562 1.286 8.804 1.976 0.657 12.629 6.257 5.525 3.598 1.423 1.011 1.615 1.606 1.265 1.078 1.413 1.310 1.871 2.059 1.736 4.024 2.828 1.451 0.853 1.514 1.678 7.395 7.023 0.862 5.889 3.226 2.089 2.300 8.565 6.430 1.036 3.103 1.286 0.624 1275 chr20 56232509 56295475 + 0 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) 1688 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 13.949 0.494 0.376 0.636 1.164 5.044 2.195 1.119 3.624 2.282 1.990 1.497 1.360 1.326 3.784 1.563 1.001 0.909 0.051 0.101 0.485 0.317 0.048 0.187 1.559 0.241 0.156 0.998 0.921 0.733 0.843 0.440 1.303 1.292 0.400 0.730 2.579 4.552 0.474 3.678 3.423 2.912 1587 chr5 142189710 142212414 + 0 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 47413 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 1.595 1.046 0.238 1.170 1.711 0.840 0.531 1.370 2.544 0.596 0.398 1.523 1.710 2.635 1.291 3.828 0.804 3.158 0.031 0.018 1.980 1.070 0.180 0.119 3.490 0.574 0.319 0.769 0.529 2.166 0.323 1.319 1.398 0.964 2.403 0.659 0.223 0.234 1.590 1.843 1.218 0.971 255 chr10 65272214 65284041 + 0 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -2996 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 2.573 2.574 3.018 0.586 1.493 2.615 2.905 1.477 3.329 2.045 1.134 0.530 0.718 1.587 2.756 2.396 1.530 1.115 0.498 0.915 1.016 1.243 0.512 0.852 4.913 2.439 1.124 0.624 1.475 2.189 1.232 0.762 2.017 2.303 3.844 1.034 0.968 1.459 1.414 1.797 1.251 0.760 118 chr1 151019313 151022032 + 0 NA TTS (NM_001159642) TTS (NM_001159642) 456 NM_017860 54964 Hs.549171 NM_017860 ENSG00000143443 C1orf56 MENT chromosome 1 open reading frame 56 protein-coding 3.315 2.965 0.664 1.510 2.539 2.537 2.649 1.823 31.592 30.476 3.838 2.559 3.405 2.363 2.465 3.186 1.512 2.177 2.100 2.637 2.276 2.367 2.382 3.715 3.132 1.912 1.237 0.904 2.802 5.613 5.098 8.796 8.654 1.617 0.289 2.657 4.163 8.734 2.164 1.901 1.812 1.011 288 chr11 736107 749167 + 0 NA Intergenic Intergenic -4795 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 1.478 2.273 2.496 0.611 1.707 0.804 1.251 0.748 2.716 1.618 1.629 0.361 0.368 0.838 2.440 2.086 0.482 1.230 0.233 0.357 1.380 1.971 0.721 2.326 1.567 1.922 0.890 0.442 2.410 1.954 0.835 0.967 1.439 2.033 1.329 1.001 2.446 1.209 0.635 0.621 0.259 0.124 815 chr17 27914664 27923086 + 0 NA Intergenic Intergenic -1652 NM_152345 124930 Hs.662164 NM_152345 ENSG00000198720 ANKRD13B - ankyrin repeat domain 13B protein-coding 2.975 3.862 0.146 1.370 2.665 1.046 3.520 0.857 6.522 4.327 2.116 1.640 1.154 1.670 2.497 1.065 0.611 1.154 0.823 2.624 1.388 1.336 2.477 5.206 6.389 1.700 0.904 0.457 0.950 8.634 3.099 1.527 1.382 2.960 2.581 0.831 1.121 8.822 1.507 1.005 2.393 1.442 553 chr14 24833987 24851473 + 0 NA intron (NM_001198966, intron 4 of 9) intron (NM_001198966, intron 4 of 9) 4371 NM_001288802 4776 Hs.77810 NM_004554 ENSG00000100968 NFATC4 NF-AT3|NF-ATC4|NFAT3 nuclear factor of activated T-cells 4 protein-coding 0.844 0.267 1.030 0.423 1.272 2.494 1.203 0.703 9.424 3.763 3.606 0.587 0.201 0.469 0.690 1.284 0.251 0.880 0.748 0.278 0.225 0.091 0.333 1.562 0.126 0.186 0.130 1.051 2.337 1.071 1.172 0.623 1.503 1.105 0.101 0.481 0.611 3.097 0.154 0.182 0.705 0.501 1850 chr8 53371895 53382125 + 0 NA Intergenic Intergenic -54571 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 0.386 0.106 1.297 2.059 4.098 0.055 2.784 1.351 5.424 2.442 3.116 3.712 0.818 1.270 1.318 1.710 0.102 0.767 0.078 0.947 0.565 0.340 0.007 6.500 0.080 0.259 0.137 1.836 0.208 0.513 0.188 4.482 0.686 2.888 2.167 1.433 0.777 0.058 0.380 0.333 0.259 0.344 37 chr1 27839882 27874218 + 0 NA Intergenic MIR|SINE|MIR -40352 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 0.588 1.269 0.070 1.572 2.911 1.205 2.027 0.995 7.860 2.287 1.046 2.414 0.869 1.054 0.607 2.189 0.707 0.388 1.415 0.212 1.767 1.762 0.832 0.453 5.108 2.329 0.832 1.446 0.638 1.079 1.272 1.088 1.320 3.352 3.206 0.407 1.192 2.304 1.661 1.363 0.679 0.432 1253 chr20 44621049 44625384 + 0 NA Intergenic AluSp|SINE|Alu -14331 NM_004994 4318 Hs.297413 NM_004994 ENSG00000100985 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 protein-coding 2.181 0.689 7.585 1.217 1.782 0.696 1.387 1.040 5.229 1.496 5.812 2.159 0.246 0.905 2.224 1.466 3.116 0.106 0.048 0.081 0.745 0.348 0.050 0.509 5.091 0.014 0.036 2.972 0.252 0.932 0.278 0.209 2.096 3.960 0.614 1.325 3.057 0.771 1.384 1.313 0.027 0.012 599 chr14 70438406 70481400 + 0 NA intron (NM_001034852, intron 6 of 11) intron (NM_001034852, intron 6 of 11) 87031 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 0.731 0.129 0.018 0.025 0.032 1.695 0.153 0.428 5.451 1.295 0.440 0.041 0.014 0.208 0.215 0.064 0.004 0.077 1.464 0.016 0.058 0.025 0.015 0.754 0.097 0.174 0.082 0.059 0.167 0.578 0.066 1.675 3.361 0.043 0.026 0.860 1.290 0.080 0.554 0.162 0.019 0.013 867 chr17 43501050 43526698 + 0 NA non-coding (NR_027774, exon 11 of 11) non-coding (NR_027774, exon 11 of 11) -3592 NM_174919 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 2.836 0.527 0.578 0.755 1.691 0.578 0.711 0.884 nan 1.934 1.532 0.873 0.836 1.723 1.795 2.017 0.945 0.392 0.117 0.071 1.748 1.904 0.606 0.383 1.506 0.736 0.378 0.590 0.956 1.708 1.483 0.610 2.341 2.892 0.750 0.753 2.102 1.731 0.509 0.804 0.294 0.256 1963 chr9 117640845 117676469 + 0 NA intron (NM_001252290, intron 4 of 4) MER5B|DNA|hAT-Charlie 34218 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 0.151 0.171 0.348 0.276 0.560 1.042 1.081 0.710 7.973 2.044 2.461 0.434 0.312 0.212 0.103 0.918 0.231 0.645 0.427 0.012 0.245 0.063 0.035 0.109 0.523 1.963 0.952 0.518 0.720 0.602 0.347 1.217 0.464 0.971 0.629 0.691 0.541 0.202 0.500 0.200 0.042 0.019 1337 chr22 37893582 37946680 + 0 NA Intergenic Intergenic -4921 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 2.321 0.968 0.043 1.151 1.896 0.412 1.625 1.020 3.412 0.812 0.677 1.022 0.659 1.085 1.613 1.725 0.933 0.424 0.462 0.043 0.571 0.385 0.181 0.224 2.256 0.714 0.357 0.841 0.431 1.829 0.944 0.786 0.807 3.171 1.374 0.384 1.121 0.931 1.279 0.844 0.211 0.117 303 chr11 13228088 13247020 + 0 NA Intergenic MIRb|SINE|MIR -61720 NM_001297724 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 1.169 1.449 0.067 1.864 1.969 0.110 2.133 2.720 2.187 0.930 1.549 1.320 2.019 1.817 0.627 5.554 0.233 2.590 0.047 0.022 3.246 2.977 0.241 1.644 4.152 0.987 0.494 1.283 2.834 0.251 0.899 0.220 0.405 2.735 5.071 0.284 0.205 0.266 2.319 2.033 1.475 1.638 503 chr12 123422160 123437087 + 0 NA intron (NM_001243013, intron 6 of 10) intron (NM_001243013, intron 6 of 10) 21433 NM_019624 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 3.269 0.416 0.074 1.117 1.587 0.143 1.862 2.216 5.863 1.530 0.789 1.886 1.407 1.422 0.586 3.673 0.987 1.409 0.040 0.037 2.140 1.668 0.219 0.569 2.408 0.378 0.241 2.431 7.697 0.997 1.255 0.779 1.060 2.787 2.242 1.063 0.427 0.466 1.432 0.615 0.675 0.633 1910 chr8 143779057 143784387 + 0 NA 5' UTR (NM_017527, exon 1 of 3) 5' UTR (NM_017527, exon 1 of 3) 193 NM_001160355 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 complex, locus K protein-coding 1.662 2.608 1.535 2.062 4.929 0.837 2.762 4.034 3.254 1.300 0.854 5.834 1.745 3.008 3.140 6.010 2.171 1.322 0.056 0.052 2.700 2.375 0.231 0.686 9.177 3.586 1.815 2.634 6.073 0.443 2.758 0.074 0.755 6.837 7.824 0.296 1.679 2.075 2.042 0.644 0.767 0.666 1120 chr2 33577648 33591081 + 0 NA intron (NM_001166266, intron 21 of 28) intron (NM_001166266, intron 21 of 28) -59219 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 0.107 0.099 0.009 0.692 0.440 0.044 0.180 0.118 nan 0.205 0.121 0.603 2.503 0.100 0.115 0.106 0.007 0.179 0.052 0.016 0.017 0.036 0.080 0.130 0.022 0.023 0.029 0.332 0.109 0.058 0.059 0.086 0.140 0.173 0.015 0.112 0.059 0.065 0.074 0.017 0.011 325 chr11 63632690 63647342 + 0 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) -15971 NM_017490 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 0.300 0.516 3.798 0.355 0.864 0.117 0.291 0.238 4.327 0.939 1.463 0.214 0.242 0.319 1.202 0.695 0.716 0.180 0.225 0.095 0.756 0.480 0.234 1.082 0.282 0.112 0.075 0.354 0.237 1.296 0.287 0.189 0.491 0.885 0.714 0.395 0.950 0.186 0.446 0.492 0.016 0.014 1989 chr9 140170181 140176714 + 0 NA exon (NM_017723, exon 2 of 2) exon (NM_017723, exon 2 of 2) 1167 NM_017723 54863 Hs.495541 NM_017723 ENSG00000198113 TOR4A C9orf167 torsin family 4 member A protein-coding 2.778 2.414 0.009 1.534 4.525 2.979 4.320 0.840 7.700 4.829 0.205 1.628 1.283 1.621 1.973 1.974 0.014 1.457 0.227 0.021 1.841 2.329 0.211 2.982 6.089 6.112 2.695 0.036 0.031 4.394 7.621 1.647 3.211 3.561 2.957 2.005 0.076 0.203 2.629 2.124 2.927 1.806 263 chr10 94448435 94460509 + 0 NA exon (NM_002729, exon 4 of 4) exon (NM_002729, exon 4 of 4) 4791 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 4.452 2.737 0.031 0.392 0.887 0.202 0.342 0.302 1.425 0.802 0.071 0.114 0.370 0.488 0.582 0.746 0.079 1.876 0.183 0.436 1.090 0.970 0.923 0.679 1.399 0.862 0.496 0.088 0.223 3.675 1.240 1.501 0.522 0.951 1.379 0.488 0.109 1.013 0.066 0.032 0.065 0.029 981 chr19 4865570 4879057 + 0 NA Intergenic AluSx|SINE|Alu -4533 NM_001164189 10226 Hs.140452 NM_005817 ENSG00000105355 PLIN3 M6PRBP1|PP17|TIP47 perilipin 3 protein-coding 0.768 1.383 0.206 1.077 2.180 2.260 1.341 1.253 1.935 0.763 0.692 0.719 0.637 2.163 0.787 2.846 0.559 1.223 0.029 0.452 2.436 2.488 0.800 1.501 8.308 3.318 1.510 1.231 2.217 1.612 3.839 1.523 1.446 2.513 3.188 0.570 2.233 6.756 3.739 1.305 2.064 1.588 20 chr1 16106244 16130094 + 0 NA Intergenic AluY|SINE|Alu 16025 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 2.085 2.221 3.271 0.928 1.954 4.692 2.153 1.325 1.436 0.529 0.891 0.897 0.682 1.562 1.505 1.965 1.583 1.909 0.146 0.151 2.608 2.821 1.564 1.433 4.763 4.102 1.330 0.874 2.863 2.301 1.734 0.723 0.889 1.562 1.339 0.629 1.362 4.277 0.934 1.794 1.432 1.071 440 chr12 51609791 51614158 + 0 NA promoter-TSS (NR_026893) promoter-TSS (NR_026893) -435 NM_001330422 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding 1.732 1.644 0.370 1.342 2.981 4.714 3.205 1.089 3.961 2.542 2.075 0.636 1.110 1.278 0.620 1.012 0.546 1.709 0.711 1.936 2.764 2.715 2.906 3.495 0.972 3.067 1.293 0.549 3.265 5.376 6.802 3.120 1.769 3.694 17.114 1.347 1.405 4.886 2.408 1.022 1.055 0.616 374 chr11 101978739 101993324 + 0 NA intron (NM_001282100, intron 2 of 7) intron (NM_001282100, intron 2 of 7) 2860 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 2.015 3.536 4.834 0.833 2.706 4.224 3.413 1.332 5.272 4.020 4.983 1.445 1.761 2.193 5.662 2.727 2.014 2.122 0.062 3.185 3.265 3.552 1.431 2.190 6.901 3.639 1.483 2.765 4.404 2.716 2.597 1.872 5.349 2.631 4.472 1.788 2.197 3.038 2.880 2.766 3.151 3.297 494 chr12 117555896 117590367 + 0 NA intron (NR_120464, intron 2 of 2) AluJr|SINE|Alu 35859 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 0.200 0.686 0.027 0.022 0.092 0.057 0.113 0.100 0.749 0.175 0.106 0.021 0.020 0.178 0.086 0.181 0.017 0.067 0.043 0.024 0.600 0.456 0.069 2.726 0.429 0.126 0.086 0.052 0.215 5.019 0.068 0.903 2.876 0.056 0.062 1.000 0.243 0.116 0.060 0.132 0.080 0.056 1884 chr8 103627597 103630900 + 0 NA Intergenic MER58A|DNA|hAT-Charlie 36944 NR_103759 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 0.022 0.266 8.627 0.114 0.544 0.096 0.063 0.130 2.755 0.654 1.413 0.388 0.035 0.295 3.228 0.094 0.288 0.942 0.118 1.523 1.051 0.046 0.383 0.057 0.091 0.048 0.602 0.241 2.953 0.133 0.308 3.564 1.496 0.027 0.223 1.577 0.035 0.471 0.091 0.031 0.015 454 chr12 57478155 57489256 + 0 NA intron (NM_001330305, intron 1 of 5) intron (NM_001330305, intron 1 of 5) 1028 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 3.687 3.500 5.834 0.855 2.140 3.178 3.815 2.237 5.274 2.941 3.227 1.291 1.423 2.595 1.519 1.520 1.506 0.808 0.532 5.905 1.849 2.605 3.951 3.225 4.184 2.080 0.977 1.866 4.028 4.488 4.430 1.906 2.988 3.301 2.865 1.077 2.090 8.317 1.922 1.521 1.857 1.110 1360 chr3 10010920 10029843 + 0 NA intron (NM_018447, intron 2 of 8) AluSg|SINE|Alu -8196 NR_103821 442075 Hs.690469 NM_001013730 EMC3-AS1 - EMC3 antisense RNA 1 ncRNA 0.654 1.372 0.229 0.603 1.187 3.149 1.094 0.540 1.214 0.689 0.968 0.774 0.797 0.899 1.001 2.486 0.521 2.628 0.106 0.132 0.975 0.755 0.188 3.558 0.677 1.290 0.625 0.433 0.747 0.788 0.741 0.691 1.389 1.099 2.894 0.934 0.455 0.668 1.799 1.197 0.435 0.311 267 chr10 104523205 104540328 + 0 NA intron (NM_001083913, intron 1 of 3) AluY|SINE|Alu -4122 NM_017787 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1-like protein-coding 0.083 0.404 1.805 0.110 0.167 0.033 0.152 0.037 0.325 0.093 0.149 0.017 0.069 0.038 0.112 0.237 0.167 0.129 0.047 0.057 0.157 0.068 1.543 0.196 0.199 0.085 0.046 0.104 0.140 0.623 0.137 0.027 0.194 0.108 0.104 0.063 1.218 0.257 0.069 0.046 1.278 0.695 1594 chr5 151149520 151153216 + 0 NA promoter-TSS (NR_132346) promoter-TSS (NR_132346) -108 NM_005754 10146 Hs.3353 NM_005754 ENSG00000145907 G3BP1 G3BP|HDH-VIII G3BP stress granule assembly factor 1 protein-coding 8.940 8.473 3.769 1.447 6.249 2.736 5.345 2.760 7.551 4.684 3.237 2.732 3.502 5.390 6.488 3.491 2.641 3.988 1.511 1.911 4.922 8.217 3.554 6.262 7.305 9.543 3.311 2.917 5.076 6.893 8.902 4.327 4.995 7.175 7.414 3.616 2.753 6.349 4.937 4.692 7.487 5.841 832 chr17 36855357 36863966 + 0 NA Intergenic CpG -1077 NR_039887 100616203 NR_039887 ENSG00000275238 MIR4734 mir-4734 microRNA 4734 ncRNA 8.539 6.683 3.464 3.038 7.208 8.481 3.957 1.374 6.697 3.662 5.901 1.622 1.999 3.255 5.640 3.245 1.842 1.386 2.820 3.738 3.900 4.369 2.468 2.189 10.547 4.926 2.028 2.244 2.000 4.977 2.615 4.906 4.368 7.509 4.738 2.894 3.912 10.512 2.324 1.141 0.957 0.549 1987 chr9 139775592 139782370 + 0 NA Intergenic AluSx|SINE|Alu -1984 NM_021138 7186 Hs.522506 NM_021138 ENSG00000127191 TRAF2 MGC:45012|TRAP|TRAP3 TNF receptor associated factor 2 protein-coding 3.784 7.279 0.349 1.816 5.021 1.247 5.120 1.269 3.981 1.873 1.430 1.939 0.966 2.390 1.918 1.755 0.998 1.601 1.027 0.573 3.104 3.640 2.475 3.202 18.666 4.831 2.267 1.481 3.141 6.097 4.340 4.613 4.328 4.958 2.020 1.166 6.424 6.611 2.278 1.445 0.817 0.515 1539 chr5 43057072 43074943 + 0 NA non-coding (NR_034127, exon 1 of 1) non-coding (NR_034127, exon 1 of 1) 1066 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 2.536 2.200 1.457 0.911 1.928 4.132 3.488 2.388 7.357 5.584 5.786 1.196 2.356 2.284 3.006 4.752 1.130 2.528 1.224 3.466 5.177 6.104 1.006 3.164 2.783 3.141 1.257 4.156 1.963 2.690 3.279 2.862 3.215 3.901 4.649 1.414 1.745 4.187 4.277 2.337 4.090 3.903 1839 chr8 37371448 37380974 + 0 NA intron (NR_121621, intron 1 of 2) intron (NR_121621, intron 1 of 2) 2693 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 0.628 1.119 0.097 0.040 0.011 0.052 0.128 0.056 2.061 0.496 0.124 0.030 0.642 0.642 0.803 0.582 0.010 3.239 0.021 0.043 0.255 0.114 0.016 0.063 1.168 1.049 0.810 0.024 8.693 0.256 0.082 0.008 0.246 0.089 0.049 0.839 0.053 0.117 1.071 2.492 0.206 0.128 265 chr10 104152424 104171245 + 0 NA TTS (NR_073110) TTS (NR_073110) 6481 NM_001261403 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 0.506 1.920 0.643 0.292 0.758 2.424 0.556 0.361 0.897 0.573 0.436 0.077 0.276 0.760 0.378 0.641 0.515 0.588 0.382 0.450 0.447 0.418 0.920 0.741 3.002 1.824 0.878 0.232 0.409 1.484 1.696 0.374 0.684 1.530 1.093 0.497 0.637 4.976 0.451 0.316 0.514 0.263 1130 chr2 47400531 47502482 + 0 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -47431 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 0.649 0.695 0.185 0.495 0.823 0.661 1.410 0.945 nan 3.325 1.794 0.673 0.622 0.988 1.549 1.728 0.177 0.741 0.182 0.236 0.811 0.661 0.279 1.226 1.889 0.699 0.369 0.588 0.737 1.285 0.741 0.509 0.885 1.183 1.927 0.432 0.419 0.945 0.643 0.705 0.416 0.288 1959 chr9 110801782 110822312 + 0 NA Intergenic Intergenic -560046 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.504 0.444 0.021 1.249 1.706 0.160 1.237 0.665 nan 0.899 0.289 0.824 0.396 1.614 0.415 1.782 0.505 0.859 0.010 0.007 0.675 0.347 0.067 1.031 1.922 0.725 0.465 0.419 2.015 0.334 0.350 0.323 0.926 1.030 0.250 1.265 0.756 0.395 0.587 0.259 0.182 0.179 285 chr11 605401 617048 + 0 NA intron (NM_020901, intron 17 of 17) intron (NM_020901, intron 17 of 17) 4504 NM_004031 3665 Hs.166120 NM_001572 ENSG00000185507 IRF7 IMD39|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H interferon regulatory factor 7 protein-coding 0.673 1.145 0.271 0.384 1.391 0.492 0.932 0.542 2.646 1.312 2.376 0.351 0.415 0.514 0.240 1.438 0.033 0.269 0.643 0.095 0.419 0.434 0.434 0.212 0.960 0.794 0.424 0.741 0.703 0.804 0.863 0.223 0.454 3.131 1.082 0.190 0.199 1.067 0.400 0.645 0.287 0.246 1734 chr7 12806614 12813060 + 0 NA Intergenic Intergenic 82926 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.501 0.264 10.176 0.029 0.147 0.040 0.632 0.196 1.240 0.252 2.106 0.539 0.054 0.034 0.210 0.549 0.281 1.806 0.030 0.302 0.508 0.168 0.023 0.133 0.028 0.023 0.024 0.118 0.116 0.316 0.076 0.171 0.440 0.132 0.072 0.095 0.180 0.063 0.111 0.214 0.009 1643 chr6 27559569 27574590 + 0 NA Intergenic Intergenic -94735 NR_038294 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 0.369 0.707 0.058 0.467 1.215 0.465 0.033 0.014 0.560 0.366 0.205 0.263 0.228 0.124 0.551 0.269 0.071 0.804 0.054 0.167 0.443 0.273 0.118 1.499 0.632 0.433 0.255 0.105 0.658 1.279 3.135 1.698 0.388 0.794 0.672 0.260 0.183 2.506 0.418 0.122 0.180 0.161 52 chr1 38464201 38472400 + 0 NA intron (NM_004468, intron 1 of 5) AluSx|SINE|Alu 2887 NM_004468 2275 Hs.57687 NM_004468 ENSG00000183386 FHL3 SLIM2 four and a half LIM domains 3 protein-coding 2.613 4.522 0.145 1.202 2.527 2.319 2.010 1.691 5.038 2.023 0.990 1.619 0.844 2.207 1.038 5.758 0.278 3.851 0.381 0.714 1.680 1.657 1.254 0.410 4.560 4.441 1.993 1.472 0.587 1.509 2.829 0.153 2.132 2.084 4.069 0.961 0.343 2.282 2.109 2.788 1.461 0.723 31 chr1 25321052 25434284 + 0 NA Intergenic L2b|LINE|L2 27674 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 0.281 0.155 0.010 0.025 0.095 0.026 0.066 0.056 6.019 1.522 0.294 0.157 0.101 0.069 0.054 0.359 0.011 0.240 0.181 0.038 0.342 0.155 0.065 1.342 0.575 0.118 0.061 0.096 0.155 0.173 0.357 0.034 0.109 0.095 0.040 0.043 0.072 0.148 0.134 0.402 0.400 0.346 252 chr10 60191099 60200690 + 0 NA Intergenic Intergenic 50991 NR_073073 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 0.948 1.314 0.042 0.958 1.645 9.054 0.885 0.680 1.374 0.771 1.559 0.976 0.282 0.950 0.733 1.386 0.409 1.577 0.031 0.014 0.216 0.091 0.077 0.067 2.074 0.397 0.220 0.474 1.304 0.255 0.112 0.302 0.961 1.179 0.116 0.946 0.052 0.303 0.908 1.353 1.558 1.516 660 chr15 80768645 80787754 + 0 NA intron (NM_014862, intron 5 of 18) L2b|LINE|L2 77086 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 0.381 0.256 0.029 0.070 0.078 0.202 0.053 0.976 1.081 0.118 0.240 0.138 0.340 0.251 0.121 0.090 0.005 1.484 0.052 0.043 0.117 0.102 0.019 0.068 0.456 0.145 0.131 0.061 6.574 0.415 0.034 0.165 0.115 0.030 0.100 0.115 0.065 0.069 0.240 0.595 0.605 0.353 1455 chr3 189712973 189737232 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) -113651 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 0.544 0.273 0.397 0.578 1.080 3.713 1.151 0.673 0.624 0.267 0.248 1.037 0.399 0.931 0.528 2.201 0.413 1.059 0.033 2.084 0.981 0.161 4.227 0.789 0.428 0.322 0.211 2.272 0.558 0.267 0.655 0.596 0.575 1.150 0.181 0.106 0.268 1.451 0.891 0.189 0.107 614 chr14 103521962 103543003 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -8740 NM_006035 9578 Hs.654634 NM_006035 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta protein-coding 3.736 1.007 0.510 0.359 0.668 0.914 1.649 0.619 2.972 1.487 1.491 1.085 0.246 1.443 3.566 1.289 0.894 0.316 0.180 0.296 3.194 2.878 0.427 2.590 0.579 0.916 0.508 1.819 0.656 4.042 2.007 2.018 6.232 0.769 0.833 1.163 3.175 0.991 1.310 0.798 0.212 0.114 1531 chr5 34606821 34612047 + 0 NA Intergenic Intergenic -46999 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 1.088 2.361 3.658 4.063 0.328 2.641 1.698 5.455 2.414 3.719 2.969 2.300 1.482 1.881 3.334 1.535 5.379 0.075 0.079 1.589 0.803 0.072 0.357 3.332 2.287 1.552 1.573 2.049 0.327 0.832 1.025 0.992 1.710 1.103 0.944 0.697 0.592 2.400 0.974 1.895 1.007 1201 chr2 238598151 238615422 + 0 NA intron (NM_001137551, intron 1 of 11) intron (NM_001137551, intron 1 of 11) 5979 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 2.359 2.083 0.054 1.252 2.656 0.401 1.578 0.866 2.053 1.123 0.671 1.081 1.106 1.664 2.352 3.118 0.453 1.914 0.654 0.229 2.068 1.810 0.943 1.836 3.481 1.179 0.632 0.676 0.857 1.862 1.921 0.744 1.717 3.796 4.210 0.610 0.800 3.346 1.582 2.689 1.846 1.321 1049 chr19 44255262 44291261 + 0 NA intron (NM_002250, intron 6 of 8) intron (NM_002250, intron 6 of 8) 12148 NM_002250 3783 Hs.10082 NM_002250 ENSG00000104783 KCNN4 DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4 potassium calcium-activated channel subfamily N member 4 protein-coding 4.182 4.895 0.453 1.655 3.304 2.947 3.418 1.520 nan 3.256 5.272 1.986 2.914 1.936 2.813 2.845 2.474 2.403 0.249 0.539 2.858 2.913 1.290 2.474 8.331 2.033 0.918 1.649 4.912 3.570 12.133 1.566 1.802 4.583 2.303 1.294 3.016 4.917 1.688 2.655 3.574 3.467 926 chr17 79624771 79635189 + 0 NA Intergenic Intergenic 3196 NR_130939 339229 Hs.405942 NM_001039842 ENSG00000204237 OXLD1 C17orf90 oxidoreductase like domain containing 1 protein-coding 1.617 2.127 0.352 1.999 3.851 3.527 1.810 0.798 4.524 2.822 2.464 1.349 0.876 1.645 1.616 3.016 0.839 1.368 0.623 0.957 1.442 1.505 1.184 2.649 2.412 1.503 0.719 0.866 1.412 2.235 2.421 0.840 5.662 5.530 1.797 1.622 2.521 3.643 1.387 1.208 0.973 0.440 316 chr11 61581457 61585439 + 0 NA promoter-TSS (NM_001281502) promoter-TSS (NM_001281502) -227 NM_001281501 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 5.007 7.611 1.619 1.933 6.793 7.581 4.929 2.952 10.436 3.414 4.926 4.235 2.309 2.635 7.403 4.207 2.269 3.633 5.112 5.356 3.204 4.145 4.934 6.559 11.233 6.848 3.291 3.258 11.065 9.363 6.777 3.584 3.563 10.506 6.249 2.052 1.502 7.102 5.417 3.056 5.144 3.536 1144 chr2 86929153 86934550 + 0 NA intron (NM_001198954, intron 1 of 7) MLT1F2|LTR|ERVL-MaLR -15563 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 1.063 0.539 0.815 1.770 3.195 1.209 0.743 0.988 0.682 0.428 1.613 0.219 0.911 1.739 1.394 1.061 2.166 0.165 0.842 0.509 0.054 1.244 3.757 0.310 0.275 0.850 0.301 1.610 0.719 5.675 0.763 1.772 1.096 0.727 2.176 1.407 2.661 0.493 1.238 1.534 966 chr19 1063070 1075959 + 0 NA intron (NM_001321232, intron 2 of 22) MIRc|SINE|MIR -1706 NM_001282335 23526 Hs.465521 NM_012292 ENSG00000180448 ARHGAP45 HA-1|HLA-HA1|HMHA1 Rho GTPase activating protein 45 protein-coding 0.894 1.045 0.471 0.676 2.139 0.768 2.111 0.713 4.111 2.036 1.831 0.845 0.279 2.305 1.166 1.652 0.576 0.494 0.187 0.065 1.042 0.913 1.245 0.444 3.208 1.118 0.707 1.034 0.580 1.175 3.479 0.568 0.644 2.689 3.343 0.362 0.321 6.395 0.993 0.554 0.607 0.366 1672 chr6 41038669 41042714 + 0 NA promoter-TSS (NM_021705) promoter-TSS (NM_021705) -16 NM_021705 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 6.104 7.120 3.222 1.475 5.726 4.754 4.515 2.323 8.223 7.557 8.831 2.480 1.800 2.424 6.240 7.033 1.937 3.772 3.752 5.614 5.192 5.730 1.908 4.436 6.850 7.095 3.166 2.539 8.703 4.729 6.475 4.999 4.679 9.630 8.180 2.606 3.700 8.865 5.481 3.889 4.828 3.510 150 chr1 154927703 154936107 + 0 NA exon (NM_138300, exon 3 of 3) exon (NM_138300, exon 3 of 3) -2042 NM_001321726 101928120 Hs.533597 NM_001321726 LOC101928120 - uncharacterized LOC101928120 protein-coding 2.760 3.634 1.442 1.285 3.394 5.321 2.362 1.039 4.910 3.441 3.063 1.690 2.337 2.132 1.939 1.864 1.234 1.945 2.801 1.914 2.314 2.462 1.374 3.219 4.185 2.051 1.078 1.332 1.748 2.787 3.175 5.202 5.084 2.917 2.811 1.658 2.608 6.794 2.204 1.271 1.173 0.980 218 chr1 234790326 234796586 + 0 NA intron (NR_125944, intron 3 of 3) intron (NR_125944, intron 3 of 3) 11421 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 1.312 1.399 0.030 2.817 2.092 0.482 1.478 3.944 2.127 0.410 0.352 3.168 1.718 5.041 8.053 5.586 0.762 3.498 0.096 0.067 4.163 3.148 0.211 0.728 9.234 2.949 1.464 1.652 15.346 1.843 4.511 2.810 4.770 0.991 4.723 1.298 1.914 2.555 2.890 3.943 1.233 1.241 455 chr12 57910174 57918683 + 0 NA promoter-TSS (NM_004083) promoter-TSS (NM_004083) -128 NM_001195053 1649 Hs.505777 NM_004083 ENSG00000175197 DDIT3 CEBPZ|CHOP|CHOP-10|CHOP10|GADD153 DNA damage inducible transcript 3 protein-coding 4.145 3.900 2.857 1.071 3.259 2.992 2.905 1.905 10.488 7.368 4.348 1.511 1.997 2.018 2.389 2.618 1.418 9.464 2.063 8.737 2.163 2.379 3.000 4.626 3.086 3.832 2.070 1.480 9.099 4.150 6.272 4.427 2.960 4.174 4.566 1.829 2.053 5.830 3.839 1.825 5.152 3.546 875 chr17 46613512 46638553 + 0 NA TTS (NM_002146) TTS (NM_002146) -3639 NM_002145 3212 Hs.514289 NM_002145 ENSG00000173917 HOXB2 HOX2|HOX2H|Hox-2.8|K8 homeobox B2 protein-coding 3.001 2.617 0.302 0.258 0.487 0.111 0.092 0.047 nan 0.453 1.401 0.038 0.103 1.974 0.217 0.415 1.347 1.034 0.047 3.477 0.263 0.141 0.731 0.140 5.712 1.645 0.896 0.476 0.416 2.336 7.784 0.053 0.230 0.458 0.493 0.025 1.510 0.880 0.120 0.124 8.822 6.650 1586 chr5 139690255 139708732 + 0 NA Intergenic Intergenic -16804 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 0.897 2.292 0.040 0.482 0.616 0.068 0.847 2.608 0.621 0.183 0.206 0.439 1.232 3.878 0.782 2.398 0.113 1.853 0.016 0.038 3.568 2.293 0.770 0.397 3.910 3.027 1.390 0.331 1.324 0.921 0.808 0.133 1.417 0.810 5.462 0.772 0.202 0.246 0.889 1.152 0.321 0.185 1374 chr3 47843011 47845896 + 0 NA promoter-TSS (NR_075079) promoter-TSS (NR_075079) 54 NM_001330990 22907 Hs.517948 NM_014966 ENSG00000132153 DHX30 DDX30|RETCOR DExH-box helicase 30 protein-coding 4.342 7.885 3.864 1.351 5.373 5.903 8.623 3.102 4.538 4.257 2.958 2.403 1.382 2.060 5.196 4.668 1.790 3.689 1.762 2.887 2.487 4.091 2.853 5.098 9.903 12.349 4.567 2.610 5.632 4.726 5.312 2.354 2.540 6.880 4.780 1.326 1.576 7.985 6.465 3.123 5.609 4.362 86 chr1 88169707 88185568 + 0 NA Intergenic L2c|LINE|L2 -340299 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 0.152 0.063 4.918 0.036 0.114 0.040 0.051 0.020 0.056 0.050 0.067 0.018 0.008 0.041 0.103 0.031 0.169 0.109 0.044 0.009 0.075 0.045 0.024 0.034 0.094 0.011 0.005 0.044 0.107 0.123 0.045 0.035 0.077 0.049 0.041 0.047 0.026 0.026 0.027 0.019 0.029 0.010 1866 chr8 76314880 76322169 + 0 NA Intergenic Intergenic -1381 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 2.540 0.437 1.236 0.755 1.046 1.404 3.922 2.800 3.012 1.116 0.156 0.924 0.979 2.032 0.132 2.214 0.040 1.718 1.817 11.361 2.783 3.235 1.353 0.798 0.494 1.790 0.889 8.556 3.210 3.172 2.541 1.656 0.484 1.277 0.013 0.955 0.374 0.643 0.173 0.156 0.063 0.021 712 chr16 14722598 14735784 + 0 NA intron (NM_001330500, intron 1 of 5) AluSx1|SINE|Alu 2523 NM_001330500 51283 Hs.435556 NM_016561 ENSG00000103429 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 2.829 2.654 1.307 0.813 2.057 1.631 2.044 0.937 4.585 2.994 1.292 1.024 0.705 2.280 1.839 2.375 1.427 1.513 0.853 0.725 1.460 1.458 1.633 2.126 3.118 1.595 0.724 1.167 2.031 2.773 1.956 1.246 1.909 4.209 2.392 0.752 1.026 2.793 1.699 0.911 1.039 0.690 1195 chr2 234144379 234163573 + 0 NA Intergenic MIR|SINE|MIR -6241 NM_198890 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 1.166 0.851 0.049 1.497 2.109 0.593 2.243 1.690 3.034 1.066 1.088 2.319 1.452 1.585 3.322 7.157 0.425 0.309 0.058 0.151 2.458 1.836 0.256 0.490 1.559 0.367 0.231 1.687 0.395 1.041 0.445 0.205 1.165 1.906 1.747 0.345 0.696 0.892 1.324 2.196 0.192 0.152 1428 chr3 170071831 170083324 + 0 NA 5' UTR (NM_005414, exon 2 of 7) 5' UTR (NM_005414, exon 2 of 7) 166 NM_001248008 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 6.959 1.829 4.478 0.592 1.916 4.435 2.825 1.106 3.169 2.303 6.275 0.674 0.546 0.841 3.292 2.345 1.258 1.846 1.104 2.110 1.665 1.731 1.872 1.231 3.484 3.898 1.490 0.868 2.617 4.941 3.645 2.079 2.750 2.664 1.630 0.862 3.574 1.476 0.789 1.097 1.153 0.846 1802 chr7 101370164 101378230 + 0 NA Intergenic Intergenic -84987 NM_001202543 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 0.107 1.032 0.038 0.925 1.064 0.015 4.901 1.919 2.924 0.773 2.094 0.874 0.678 1.459 0.728 3.071 0.177 2.188 0.063 0.017 1.640 1.129 0.028 2.587 1.890 0.270 0.146 3.113 1.630 0.807 0.080 0.029 1.829 2.444 0.080 1.855 1.302 0.187 2.756 0.198 1.936 1.535 131 chr1 151728081 151749369 + 0 NA promoter-TSS (NM_016178) promoter-TSS (NM_016178) -406 NM_016178 51686 Hs.713789 NM_016178 ENSG00000143450 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 0.826 0.483 0.358 0.985 1.419 0.354 1.243 1.081 14.524 9.236 1.494 1.204 0.493 1.719 0.659 3.041 0.279 0.412 0.338 0.192 0.569 0.531 0.285 0.714 0.523 0.363 0.143 1.095 0.428 0.562 0.687 1.781 2.995 1.951 0.615 0.488 1.146 0.797 0.707 0.390 0.218 0.132 894 chr17 62500765 62504467 + 0 NA promoter-TSS (NM_001320597) promoter-TSS (NM_001320597) 23 NM_004396 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 4.308 7.974 2.288 2.141 7.316 4.179 4.816 2.805 17.612 12.030 7.489 4.280 4.645 5.238 5.463 5.551 2.630 3.725 2.648 5.586 4.722 6.005 3.049 7.017 6.014 4.797 1.993 3.042 6.863 8.189 6.508 4.141 4.937 14.230 3.517 4.303 4.877 8.349 5.732 6.807 4.335 2.822 301 chr11 12694375 12720639 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 11538 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 2.715 2.476 1.660 1.015 2.644 1.983 2.981 2.167 6.398 3.217 4.100 0.886 1.484 2.464 2.430 3.092 0.756 2.119 1.130 0.823 2.361 1.994 1.283 4.755 2.410 1.996 0.975 1.672 2.969 3.567 1.303 1.366 2.150 3.108 3.659 1.970 1.862 1.558 1.422 1.767 1.046 1.018 950 chr18 45844154 45872300 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) 77566 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 0.054 0.255 0.007 0.037 0.044 0.039 0.019 0.640 0.071 0.085 0.010 0.071 0.023 0.313 0.056 0.007 0.062 4.202 0.030 0.049 0.010 0.052 0.073 0.095 0.067 0.030 0.049 0.124 0.132 0.058 0.334 0.288 0.025 0.010 0.087 0.058 0.085 0.510 0.188 0.102 0.090 556 chr14 29223725 29245479 + 0 NA promoter-TSS (NR_125758) promoter-TSS (NR_125758) -77 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.060 1.637 1.001 0.890 2.404 0.315 0.065 0.014 14.658 8.257 0.103 0.054 0.055 0.030 0.044 0.101 3.491 0.032 0.013 0.130 0.043 0.014 0.119 0.593 0.028 0.032 0.033 0.142 0.153 1.390 0.122 0.037 2.403 0.013 0.051 0.053 0.142 0.058 0.038 0.008 0.012 1407 chr3 141079198 141090395 + 0 NA intron (NM_001080412, intron 1 of 7) L2|LINE|L2 41741 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 5.264 2.835 0.126 1.235 3.187 5.590 7.002 4.329 4.397 2.017 2.221 1.428 2.046 3.708 0.516 5.169 1.053 2.604 0.797 0.074 2.467 2.465 0.324 7.718 8.776 3.029 1.114 2.735 4.946 4.787 3.551 1.685 5.174 2.616 7.619 2.078 2.855 0.507 3.524 3.188 5.787 6.814 1893 chr8 123791694 123795820 + 0 NA promoter-TSS (NM_014943) promoter-TSS (NM_014943) -144 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 4.401 1.606 2.297 1.514 3.887 1.667 8.754 2.327 8.793 5.277 7.596 2.977 1.228 4.392 3.812 3.415 1.016 2.420 0.485 0.336 2.496 2.488 0.942 1.423 2.058 3.008 1.681 2.436 1.213 3.673 3.960 5.136 6.453 8.528 0.631 1.913 5.332 5.190 3.324 2.096 4.075 2.554 90 chr1 94053282 94091134 + 0 NA intron (NM_001261408, intron 5 of 13) L2|LINE|L2 7494 NM_001261410 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 0.943 0.714 0.489 0.522 0.878 0.664 0.223 0.250 2.801 0.774 0.307 0.355 0.100 0.474 0.922 0.853 0.553 1.102 20.711 0.022 0.801 0.469 0.150 1.105 0.869 0.170 0.092 0.632 0.469 1.316 0.298 2.019 2.701 0.713 0.346 0.362 0.692 0.279 0.415 0.273 2.094 1.734 1494 chr4 129553380 129560073 + 0 NA Intergenic Intergenic -174052 NM_001287437 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 0.200 0.535 0.005 0.196 0.019 0.132 0.144 0.338 0.072 0.170 0.088 0.052 0.112 0.060 0.201 0.028 0.629 0.495 0.320 0.086 3.997 0.042 0.100 0.105 0.069 0.211 2.413 0.053 5.748 1.363 0.053 0.097 0.291 0.112 0.023 0.153 0.103 0.026 0.016 886 chr17 56060554 56073606 + 0 NA Intergenic Intergenic -1455 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 1.962 3.578 2.548 1.085 3.330 1.189 2.582 1.056 10.980 7.272 2.619 1.298 2.694 1.763 1.359 2.664 0.835 1.680 1.383 1.032 2.048 2.447 1.445 1.715 4.400 1.612 0.693 1.610 3.448 3.566 4.263 1.312 1.351 3.007 1.591 0.750 1.105 2.647 2.150 1.829 2.945 2.615 306 chr11 34521146 34526016 + 0 NA intron (NM_198381, intron 2 of 6) intron (NM_198381, intron 2 of 6) 9765 NM_198381 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 0.252 0.581 0.051 0.077 0.085 0.039 0.567 0.173 0.615 0.294 0.771 0.053 0.074 0.558 4.490 0.595 2.136 0.400 0.020 1.048 0.802 0.106 0.501 1.401 0.339 0.368 0.031 14.908 0.580 0.175 0.130 0.555 0.102 0.075 0.176 0.153 0.190 0.274 0.137 5.301 5.265 1468 chr4 13545054 13551469 + 0 NA non-coding (NR_015450, exon 1 of 1) non-coding (NR_015450, exon 1 of 1) 1187 NR_015450 285548 Hs.529284 NR_015450 LINC01096 - long intergenic non-protein coding RNA 1096 ncRNA 0.505 0.627 0.481 0.451 1.484 0.019 0.085 0.213 0.672 0.513 0.103 0.460 1.014 0.152 0.245 0.574 0.044 0.073 0.123 0.172 0.294 0.125 0.597 0.145 0.546 0.328 0.184 0.030 2.518 0.820 7.234 2.011 0.156 1.339 0.808 0.328 0.194 0.953 0.062 0.084 0.350 0.142 1439 chr3 177517606 177556549 + 0 NA intron (NR_110826, intron 1 of 2) AluSz|SINE|Alu 2424 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 0.647 1.629 0.034 0.509 0.614 0.544 1.080 0.791 1.712 0.553 1.900 1.078 0.312 1.477 1.676 1.125 0.567 2.288 0.250 2.005 4.822 2.865 0.070 0.823 1.335 0.260 0.212 0.187 0.107 0.769 0.280 0.562 2.403 0.269 1.214 0.575 0.565 0.525 0.979 0.710 0.041 0.031 539 chr13 107509587 107514920 + 0 NA Intergenic Intergenic 206025 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 0.070 8.849 0.150 0.430 0.051 3.481 1.067 0.905 0.109 4.206 0.105 0.018 0.035 0.182 0.027 0.040 0.115 0.024 0.043 0.021 0.207 0.015 0.079 0.036 0.605 0.035 0.046 0.341 0.044 0.060 0.014 0.014 0.010 1204 chr2 241497546 241510032 + 0 NA TTS (NM_001033575) TTS (NM_001033575) -3262 NM_001308375 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 2.800 3.714 0.621 1.532 4.357 2.312 5.194 1.285 11.443 7.283 5.377 1.450 1.541 2.664 5.273 3.567 1.390 1.748 1.881 0.848 2.156 2.627 1.824 4.373 3.418 1.964 1.110 2.262 0.851 5.552 3.715 2.136 5.182 4.312 4.389 1.969 4.197 5.240 1.513 2.565 1.453 0.938 514 chr13 24072409 24087383 + 0 NA Intergenic Intergenic 36245 NR_038995 100506697 Hs.50118 NR_038995 ENSG00000232977 LINC00327 NCRNA00327 long intergenic non-protein coding RNA 327 ncRNA 0.158 0.032 0.017 0.013 0.108 0.047 0.068 0.021 0.304 0.065 0.099 0.010 0.016 0.037 0.058 0.088 0.013 1.378 0.080 2.118 0.047 0.021 0.139 0.243 0.062 0.073 0.084 0.034 0.173 0.097 0.027 0.063 0.071 0.077 0.099 0.008 0.142 0.800 0.523 0.167 8.249 10.252 1952 chr9 102580798 102586783 + 0 NA promoter-TSS (NM_173200) promoter-TSS (NM_173200) -347 NM_173199 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 0.935 1.051 0.340 0.506 1.397 2.021 1.358 0.390 2.896 2.728 0.861 0.793 0.428 0.758 0.725 1.208 0.337 1.173 0.512 0.900 1.790 1.345 3.120 2.944 1.645 1.535 0.830 0.270 1.134 2.945 4.487 3.007 2.047 6.463 0.935 0.735 2.273 5.350 0.794 0.908 0.924 0.656 1504 chr4 185393211 185397424 + 0 NA intron (NM_002199, intron 1 of 8) (CAG)n|Simple_repeat|Simple_repeat 409 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 5.697 6.333 1.866 1.753 4.865 4.934 7.766 2.511 12.782 10.111 6.838 2.745 2.817 3.279 3.504 4.783 2.668 2.533 1.641 3.484 3.556 5.741 2.466 4.452 4.499 10.048 4.387 3.110 8.185 4.907 5.038 4.078 3.746 8.006 4.674 2.289 3.220 3.905 3.401 2.930 2.349 1.252 798 chr17 8149110 8154438 + 0 NA promoter-TSS (NR_046431) promoter-TSS (NR_046431) -361 NM_025099 80169 Hs.156055 NM_025099 ENSG00000178971 CTC1 AAF-132|AAF132|C17orf68|CRMCC|tmp494178 CST telomere replication complex component 1 protein-coding 2.011 2.306 2.403 1.102 3.654 4.441 3.073 0.842 6.844 4.682 4.293 1.701 0.796 2.826 1.966 2.759 1.709 2.481 2.218 1.927 1.271 1.481 1.183 5.974 9.194 4.214 1.594 3.341 1.649 5.957 5.265 2.181 1.649 8.386 9.647 2.115 2.197 7.058 5.521 1.530 2.529 1.800 800 chr17 9715134 9750315 + 0 NA intron (NM_004246, intron 1 of 12) L1ME4a|LINE|L1 3856 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 0.352 0.573 0.005 0.016 0.057 0.440 0.054 0.399 0.460 0.213 0.142 0.017 0.017 0.512 0.360 0.696 0.165 0.484 0.046 0.016 0.693 0.482 0.058 9.683 0.882 0.245 0.164 0.207 0.185 1.029 0.091 0.020 2.141 0.061 0.024 0.334 0.151 0.100 1.412 0.231 0.249 0.143 699 chr16 8956914 8981196 + 0 NA Intergenic AluJb|SINE|Alu -6186 NM_014316 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 1.366 1.642 0.097 0.945 1.861 0.864 1.001 0.412 2.350 0.724 0.503 0.252 0.336 2.285 0.869 1.464 1.118 0.633 0.403 0.192 0.906 0.550 0.655 0.934 1.503 0.970 0.540 0.675 0.345 1.590 0.906 0.500 1.419 0.924 1.154 0.237 0.517 1.461 1.040 0.241 0.261 0.124 1610 chr5 180236054 180246293 + 0 NA Intergenic Intergenic -4036 NM_001114617 4245 Hs.519818 NM_002406 ENSG00000131446 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 1.737 1.827 2.595 0.529 1.468 1.630 2.479 1.534 8.134 5.090 5.582 1.104 1.457 1.563 1.711 1.520 0.954 1.140 1.260 1.323 1.840 2.045 1.344 1.534 2.116 2.945 1.160 1.266 2.135 2.096 2.884 1.330 1.393 1.645 1.924 1.147 1.151 1.819 1.187 1.311 1.588 1.042 291 chr11 1843754 1860634 + 0 NA Intergenic Intergenic -3346 NM_138567 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 5.950 0.728 1.475 1.091 2.239 0.191 2.406 2.783 10.432 3.091 5.947 2.763 1.644 2.081 1.218 6.972 1.277 1.624 0.102 0.033 1.054 0.788 0.119 0.340 0.253 0.125 0.142 2.174 2.858 0.500 0.076 0.621 0.860 4.852 2.553 1.219 2.228 0.517 0.878 2.963 0.126 0.069 405 chr12 8177920 8187601 + 0 NA Intergenic L1ME4a|LINE|L1 -2599 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 2.152 1.376 1.145 0.507 1.760 2.142 2.618 0.691 3.813 2.739 2.309 0.492 0.891 1.471 3.029 1.349 0.932 1.482 0.823 1.118 2.061 2.105 1.165 1.659 2.377 1.937 0.978 0.855 4.332 3.345 5.023 1.115 1.375 2.352 2.258 0.342 1.208 6.883 1.343 0.747 2.243 1.451 1379 chr3 50627394 50670917 + 0 NA promoter-TSS (NM_001243926) promoter-TSS (NM_001243926) 107 NM_013324 1154 Hs.655334 NM_013324 ENSG00000114737 CISH BACTS2|CIS|CIS-1|G18|SOCS cytokine inducible SH2 containing protein protein-coding 0.981 0.897 0.058 0.611 1.296 0.349 2.349 1.459 4.665 1.824 1.689 0.924 0.978 1.380 0.839 1.817 0.805 0.760 0.413 0.194 1.018 0.883 0.174 0.351 0.629 1.017 0.550 1.114 0.292 0.943 0.882 0.892 0.777 1.834 1.504 0.384 0.500 0.485 0.890 0.285 0.191 0.099 1214 chr20 3774978 3802804 + 0 NA promoter-TSS (NR_109859) promoter-TSS (NR_109859) -250 NR_109859 101929125 Hs.744106 NR_109859 ENSG00000275491 LINC01730 - long intergenic non-protein coding RNA 1730 ncRNA 1.709 4.592 0.368 1.001 2.430 2.949 1.068 1.840 10.160 3.904 4.731 1.584 1.901 2.456 1.431 2.709 1.488 2.810 2.224 0.598 3.886 4.279 2.147 5.786 4.724 2.941 1.398 1.568 5.658 8.818 3.401 2.140 3.101 2.836 3.214 1.422 2.603 3.217 5.426 2.696 1.795 1.416 1883 chr8 102613441 102621246 + 0 NA intron (NM_001330593, intron 8 of 15) intron (NM_001330593, intron 8 of 15) 112675 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 0.734 0.356 3.892 0.755 1.429 0.057 0.528 1.519 7.762 2.546 3.541 2.609 0.492 0.821 2.530 3.865 2.671 0.717 0.166 0.018 0.911 0.418 0.038 0.595 0.119 0.090 0.089 1.148 0.192 0.830 0.064 2.028 5.024 1.650 0.903 1.362 3.632 0.074 0.707 1.937 0.044 0.013 1427 chr3 169939144 169959730 + 0 NA intron (NM_002740, intron 1 of 17) AluSx|SINE|Alu 9217 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 3.109 0.397 1.617 0.268 0.620 0.539 0.868 0.341 1.180 0.636 3.418 0.228 0.236 0.619 1.515 0.876 1.231 0.390 0.224 0.289 1.004 0.991 0.627 0.361 0.823 0.711 0.379 0.554 0.597 1.059 0.968 0.591 0.979 0.707 0.669 0.357 0.670 0.308 0.563 0.306 0.308 0.192 979 chr19 4050068 4068908 + 0 NA intron (NM_015898, intron 1 of 2) intron (NM_015898, intron 1 of 2) 6039 NM_001317990 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 5.203 3.486 0.632 0.796 2.701 1.766 1.885 0.715 4.295 3.014 1.728 0.900 0.731 1.165 2.557 2.165 1.153 1.373 0.898 1.549 1.878 2.261 1.691 3.326 5.345 2.186 0.917 0.505 2.099 3.798 4.495 1.499 1.317 2.903 1.072 1.989 1.474 5.907 1.870 1.574 1.064 0.655 1741 chr7 17502815 17606051 + 0 NA intron (NR_110013, intron 1 of 3) L1MC|LINE|L1 44100 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 0.307 0.223 0.056 0.156 0.198 1.419 0.454 0.179 6.412 2.044 3.266 0.235 0.283 0.584 0.268 0.148 0.100 0.273 0.107 0.012 0.884 0.483 0.046 0.326 0.140 0.046 0.038 0.375 0.195 0.262 0.046 0.376 1.180 0.103 0.153 0.613 0.313 0.220 0.241 0.097 0.040 0.039 1753 chr7 44832501 44839072 + 0 NA promoter-TSS (NM_001300981) promoter-TSS (NM_001300981) -449 NM_021130 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 7.556 6.282 5.132 0.675 3.317 4.473 7.064 1.604 8.920 6.577 7.105 2.007 2.157 2.339 5.144 3.088 6.254 1.848 2.282 3.477 3.145 4.567 2.557 4.958 6.792 3.162 1.388 3.760 6.467 4.101 4.734 2.702 3.043 5.087 6.048 3.053 3.007 6.371 3.464 3.365 2.787 1.901 1978 chr9 130859417 130863453 + 0 NA intron (NR_049766, intron 1 of 9) intron (NR_049766, intron 1 of 9) 674 NR_049766 114789 Hs.5476 NM_052901 ENSG00000148339 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 member 25 protein-coding 3.425 2.407 1.200 0.753 2.834 0.487 2.608 0.856 3.295 1.556 0.876 1.022 0.656 1.054 1.481 1.089 0.401 1.368 0.298 0.034 1.129 0.922 1.893 2.908 1.547 1.931 0.927 0.992 1.387 2.115 0.455 1.742 1.949 9.941 0.142 0.519 2.083 0.576 1.425 0.716 1.655 0.788 825 chr17 35274280 35286343 + 0 NA intron (NR_135670, intron 1 of 1) intron (NR_135670, intron 1 of 1) 13649 NR_135671 102723471 Hs.567930 NR_135668 ENSG00000277268 LOC102723471 - uncharacterized LOC102723471 ncRNA 5.130 1.751 2.845 4.455 0.079 2.893 2.070 3.582 2.022 1.086 3.090 2.526 2.999 5.712 5.712 2.249 1.879 0.059 0.252 3.792 4.145 0.105 0.321 9.106 1.126 0.422 3.023 1.619 1.371 0.634 0.045 1.393 3.251 3.016 0.385 0.457 0.863 3.385 1.630 0.019 0.034 1925 chr8 146051479 146056549 + 0 NA intron (NM_001330623, intron 1 of 4) L2c|LINE|L2 1069 NM_001330623 7553 Hs.493218 NM_003416 ENSG00000147789 ZNF7 HF.16|KOX4|zf30 zinc finger protein 7 protein-coding 2.662 5.426 0.698 1.886 4.684 3.034 9.650 3.861 4.941 3.984 2.453 1.801 1.571 1.655 4.142 5.296 1.512 1.273 1.952 2.623 1.772 2.149 1.966 1.755 3.682 5.039 2.322 0.711 2.545 4.997 6.401 1.486 1.891 6.359 1.625 0.944 2.373 5.570 1.231 1.431 2.249 1.538 2000 chrX 40030579 40036944 + 0 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) 2821 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 2.091 2.326 1.830 0.297 0.863 3.292 3.697 1.389 4.992 2.231 2.605 0.854 1.938 2.350 2.761 3.194 0.478 2.573 3.367 7.601 2.207 3.512 2.224 2.284 1.460 6.183 2.554 1.574 2.115 1.889 3.635 2.830 4.364 0.696 0.481 0.710 1.954 5.240 2.153 2.165 1.249 0.743 1129 chr2 46523225 46566220 + 0 NA intron (NM_001430, intron 1 of 15) Tigger1|DNA|TcMar-Tigger 20181 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.378 2.041 0.107 0.547 1.233 1.179 0.838 0.310 7.575 4.184 1.838 0.629 0.689 0.950 1.570 1.425 0.946 0.148 0.685 0.019 1.665 1.136 0.899 1.801 2.021 0.263 0.182 0.593 0.791 2.390 0.135 2.475 2.127 0.678 0.390 0.973 1.425 1.336 1.051 1.094 0.110 0.068 1421 chr3 168667462 168671829 + 0 NA Intergenic Intergenic 49912 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 10.741 0.036 0.883 1.559 0.015 2.837 2.956 0.145 0.092 0.629 3.583 0.054 1.623 1.258 5.070 0.373 0.419 0.068 0.031 0.033 0.057 0.062 0.102 0.055 1.851 0.184 0.111 0.114 0.018 0.059 0.769 0.064 0.310 0.056 0.027 1.370 1.272 0.026 0.011 1623 chr6 14728164 14749934 + 0 NA Intergenic Intergenic -453364 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 1.872 1.259 0.011 1.839 2.756 1.349 1.954 2.721 2.663 1.525 0.627 2.624 2.119 2.805 1.429 3.893 0.418 3.098 0.045 0.013 4.109 3.552 0.024 1.330 3.989 2.403 1.096 1.671 4.227 0.478 0.554 0.642 1.656 2.068 2.243 1.014 0.595 0.170 1.662 2.491 0.839 1.405 1050 chr19 45184028 45203533 + 0 NA Intergenic MIR|SINE|MIR -8641 NM_001039213 388551 Hs.456381 NM_001039213 ENSG00000213892 CEACAM16 CEAL2|DFNA4B carcinoembryonic antigen related cell adhesion molecule 16 protein-coding 1.067 2.469 0.022 1.122 1.622 0.503 0.732 0.849 3.146 0.916 0.435 0.879 0.798 1.363 1.869 1.525 0.315 2.875 1.896 0.021 2.200 1.920 0.230 2.039 2.108 0.837 0.452 0.814 0.350 4.502 2.773 0.311 1.494 1.647 2.363 0.859 0.395 1.007 1.090 0.734 0.791 0.628 849 chr17 39927275 39958463 + 0 NA promoter-TSS (NM_002230) promoter-TSS (NM_002230) 95 NM_021991 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 3.838 1.418 0.974 1.683 2.995 5.650 1.977 1.710 3.943 1.680 2.019 1.570 0.928 2.455 1.579 2.448 1.836 1.098 0.895 0.178 0.910 0.636 0.779 2.515 1.386 0.684 0.317 1.731 0.240 4.718 0.313 0.616 2.295 6.530 1.041 2.129 4.195 0.876 0.636 0.096 0.048 0.025 109 chr1 149967235 149994516 + 0 NA intron (NM_020205, intron 1 of 11) intron (NM_020205, intron 1 of 11) 1811 NM_020205 56957 Hs.98322 NM_020205 ENSG00000264522 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 0.753 0.735 1.472 0.433 1.118 0.518 0.770 0.505 3.274 2.019 1.317 0.645 0.538 0.903 2.141 0.916 0.399 0.956 0.716 0.320 0.661 0.501 0.356 0.816 0.484 0.482 0.240 0.751 0.570 0.560 0.546 1.590 2.190 1.408 0.516 0.799 1.414 0.789 1.001 0.329 0.350 0.209 1861 chr8 71313600 71317145 + 0 NA intron (NM_001321703, intron 1 of 22) CpG 118 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 3.628 5.720 4.576 1.862 7.320 8.025 7.404 1.166 12.169 10.039 10.248 2.012 2.075 2.286 3.104 3.904 4.292 3.211 5.215 6.018 3.088 4.615 4.651 3.237 6.639 8.622 4.119 2.092 6.875 12.096 18.470 5.258 8.494 6.749 5.737 2.934 2.736 4.463 3.133 3.008 3.736 2.269 1473 chr4 38598368 38628352 + 0 NA TTS (NR_026804) TTS (NR_026804) -52430 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 0.226 0.094 0.233 0.297 0.419 0.044 0.314 0.201 7.517 2.407 1.717 0.536 0.098 0.398 0.636 0.563 0.019 0.179 0.183 0.019 0.399 0.190 0.054 0.190 0.141 0.052 0.031 0.189 0.185 0.593 0.090 0.319 1.014 0.376 0.327 0.663 0.538 0.095 0.140 0.044 0.042 0.018 681 chr16 690550 696449 + 0 NA intron (NR_138611, intron 1 of 3) intron (NR_138611, intron 1 of 3) 445 NR_138611 84331 Hs.706105 NM_032371 ENSG00000172366 MCRIP2 C16orf14|FAM195A|c349E10.1 MAPK regulated corepressor interacting protein 2 protein-coding 2.285 5.056 0.222 0.581 2.774 2.174 2.849 0.726 9.188 4.148 2.293 0.893 0.461 1.031 2.805 2.750 0.699 1.220 0.910 0.441 1.219 1.654 1.858 3.649 1.030 0.783 0.578 1.193 0.181 3.247 2.311 5.755 3.260 4.704 2.086 1.247 1.251 4.106 2.777 0.289 0.722 0.472 1013 chr19 36247187 36250859 + 0 NA promoter-TSS (NM_001039887) promoter-TSS (NM_001039887) -21 NM_001039887 148137 Hs.527982 NM_144692 ENSG00000167595 PROSER3 C19orf55 proline and serine rich 3 protein-coding 4.873 5.181 0.827 1.842 3.877 4.589 2.576 0.775 4.929 2.067 1.410 1.193 2.187 1.365 2.072 1.504 1.596 4.761 1.281 1.776 1.747 2.192 3.472 5.408 5.213 3.773 2.008 0.690 2.743 8.292 12.672 3.626 1.570 3.544 2.356 1.101 1.736 4.662 2.981 2.067 1.885 1.097 1982 chr9 137214389 137224486 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) 1128 NM_002957 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.457 1.769 0.209 1.259 4.098 0.357 5.750 1.109 7.811 2.823 1.530 1.910 0.609 0.667 3.384 2.474 1.284 0.856 0.081 0.646 2.091 2.332 1.149 2.798 1.199 1.534 0.995 2.099 0.414 3.221 1.223 0.533 2.292 3.610 1.891 1.709 3.086 3.007 2.734 0.439 0.445 0.191 425 chr12 26264865 26282030 + 0 NA 3' UTR (NM_030762, exon 5 of 5) 3' UTR (NM_030762, exon 5 of 5) 4556 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 1.674 2.583 0.261 0.695 0.767 0.390 1.639 0.245 0.786 0.485 0.710 0.809 4.116 0.341 5.480 0.770 0.406 4.183 0.473 0.292 0.776 0.695 0.201 1.426 1.176 0.509 0.341 0.197 3.826 0.832 2.753 1.506 0.302 1.589 1.871 0.196 0.863 7.082 0.637 6.566 0.356 0.160 783 chr17 4378057 4426440 + 0 NA 5' UTR (NM_001124758, exon 1 of 13) 5' UTR (NM_001124758, exon 1 of 13) 110 NM_001124758 124976 Hs.22824 NM_001124758 ENSG00000183018 SPNS2 - sphingolipid transporter 2 protein-coding 1.333 0.069 0.299 0.592 1.212 0.086 0.523 0.369 3.793 1.311 1.730 0.145 0.058 2.227 3.767 0.906 1.454 0.134 0.335 0.026 0.324 0.166 0.053 0.109 0.221 0.231 0.137 0.874 0.124 0.357 0.104 0.755 0.936 1.179 0.939 0.399 3.857 0.320 0.401 0.022 0.176 0.111 670 chr15 93423172 93434653 + 0 NA intron (NR_037602, intron 2 of 4) intron (NR_037602, intron 2 of 4) 2386 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 2.462 3.890 1.102 0.610 2.955 2.815 5.315 2.387 3.873 3.574 4.110 1.198 1.311 3.437 3.924 2.183 1.660 1.525 1.352 3.064 2.496 3.116 1.666 3.262 1.867 1.425 0.646 1.287 3.909 3.483 1.874 2.706 3.777 2.573 3.263 2.263 4.207 2.221 2.715 3.281 0.858 0.718 1515 chr5 1342095 1346232 + 0 NA intron (NM_030782, intron 2 of 16) intron (NM_030782, intron 2 of 16) 1022 NM_030782 81037 Hs.444673 NM_030782 ENSG00000049656 CLPTM1L CRR9 CLPTM1 like protein-coding 2.028 2.114 0.404 1.265 5.329 1.887 7.509 1.305 7.844 6.499 12.537 1.152 2.042 1.186 2.866 3.220 1.208 2.278 2.087 2.145 2.564 2.496 2.158 1.916 2.737 5.214 2.877 1.608 1.908 2.526 2.827 2.626 6.127 6.772 2.515 1.261 1.970 2.052 2.270 0.801 1.182 0.797 1092 chr19 57032509 57073059 + 0 NA intron (NM_020828, intron 2 of 7) L2|LINE|L2 2467 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 0.060 0.188 0.061 0.111 0.261 0.022 0.216 0.037 0.084 0.071 0.228 0.155 0.070 0.062 0.240 0.102 0.087 0.116 0.018 0.065 0.079 0.059 0.020 0.082 0.288 0.092 0.052 0.094 0.145 0.205 0.215 0.060 0.021 0.353 0.139 0.012 0.014 0.129 0.180 0.107 4.541 3.606 1354 chr22 50322109 50364931 + 0 NA Intergenic Intergenic -10623 NM_001001852 415116 Hs.530381 NM_001001852 ENSG00000198355 PIM3 pim-3 Pim-3 proto-oncogene, serine/threonine kinase protein-coding 4.385 2.980 0.469 0.961 2.744 1.767 4.181 0.934 13.044 6.838 6.220 1.050 0.432 1.330 1.401 1.308 1.127 0.529 0.607 0.166 0.721 0.828 1.014 1.183 2.068 1.466 0.660 0.850 0.770 2.865 1.512 4.526 5.657 3.626 0.922 1.729 5.216 2.667 0.772 0.267 0.605 0.344 1127 chr2 46292744 46311391 + 0 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -222474 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.497 2.557 0.013 0.294 0.692 1.796 0.158 0.261 nan 0.229 0.116 0.676 1.314 0.364 1.389 1.081 0.734 1.217 0.060 0.008 1.208 0.726 1.819 0.377 1.186 2.599 1.090 0.353 4.999 0.847 0.382 1.263 0.917 0.251 0.377 0.393 0.759 2.313 0.758 2.863 3.267 2.559 1134 chr2 68946373 68952369 + 0 NA Intergenic Intergenic -12542 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 0.096 0.066 0.251 0.229 0.074 0.066 0.052 0.752 0.191 0.069 0.578 0.059 0.201 0.100 1.739 0.154 0.050 1.138 0.702 0.012 0.115 0.122 0.181 0.103 0.076 0.283 0.122 0.036 6.551 0.168 0.460 0.046 0.471 0.027 0.106 0.106 0.330 0.264 0.185 1016 chr19 36668812 36682237 + 0 NA intron (NM_001042474, intron 4 of 4) L1MB5|LINE|L1 -29980 NM_007145 7705 Hs.643436 NM_007145 ENSG00000167635 ZNF146 OZF zinc finger protein 146 protein-coding 0.102 0.393 1.031 0.269 0.545 1.695 0.077 0.319 0.101 0.078 0.174 0.009 0.017 0.121 0.619 0.029 0.083 0.059 0.031 0.082 0.043 0.071 0.202 0.604 5.408 2.314 0.104 0.167 0.148 3.944 0.006 0.025 2.033 0.076 0.073 0.055 0.086 0.130 0.101 3.438 3.215 1675 chr6 42182677 42198809 + 0 NA Intergenic Intergenic -5110 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 2.712 0.950 0.408 1.491 3.592 1.863 1.862 1.871 4.061 2.453 2.424 2.319 1.222 1.352 2.463 6.054 0.963 1.426 0.710 0.180 2.766 2.336 0.225 1.057 1.644 1.049 0.534 2.217 5.294 0.994 2.359 1.537 1.344 3.000 6.307 0.955 3.564 0.823 3.284 0.865 4.181 4.184 1359 chr3 9436201 9444460 + 0 NA intron (NM_001292043, intron 1 of 24) intron (NM_001292043, intron 1 of 24) 946 NM_001292043 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 3.143 4.611 2.790 1.124 4.328 4.140 5.656 1.847 7.290 5.281 2.914 1.487 1.279 1.485 2.548 2.571 2.226 3.121 2.468 2.221 1.628 2.077 1.207 4.149 5.746 5.276 2.247 1.672 4.144 4.417 4.193 1.818 2.460 5.012 2.669 2.401 1.553 3.835 3.425 3.850 2.336 1.635 297 chr11 9773247 9789732 + 0 NA promoter-TSS (NR_033972) promoter-TSS (NR_033972) -409 NR_033972 440028 Hs.677541 NR_033972 ENSG00000245522 LOC440028 - uncharacterized LOC440028 ncRNA 1.806 1.898 0.369 0.563 1.147 1.511 1.182 1.094 2.173 0.747 0.924 0.520 0.933 0.807 0.959 1.521 0.406 1.845 0.492 0.378 0.937 1.075 2.294 0.914 4.101 2.400 1.047 0.746 10.374 2.030 1.229 2.380 0.790 1.312 1.328 0.675 0.975 2.372 1.589 1.150 1.258 1.211 1871 chr8 81718553 81724499 + 0 NA intron (NM_001033723, intron 2 of 8) AluSz|SINE|Alu 65490 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.267 0.136 5.313 0.033 0.142 0.084 0.321 0.071 0.349 0.095 1.199 0.466 0.040 3.627 0.035 1.210 0.212 0.119 0.070 0.096 0.039 0.093 0.020 0.026 0.257 0.137 0.068 0.082 0.106 0.250 0.158 0.016 0.123 1.207 0.010 0.067 0.035 0.019 0.046 1776 chr7 74039240 74059306 + 0 NA Intergenic AluY|SINE|Alu -22718 NM_033000 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 0.738 0.660 0.452 0.271 0.545 0.050 1.370 0.767 1.662 0.455 1.366 0.444 0.424 0.490 1.194 1.675 1.262 1.052 0.064 0.069 3.214 2.616 0.221 0.795 0.983 0.065 0.066 0.864 0.325 1.356 0.419 0.220 0.874 0.863 0.938 0.562 1.486 0.223 0.768 0.467 0.198 0.098 1231 chr20 31324535 31343034 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -1970 NM_053041 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 0.811 1.335 1.957 0.858 1.391 0.687 1.725 1.211 nan 0.905 0.878 0.718 0.810 1.243 0.900 1.798 0.445 1.474 0.387 0.150 2.578 2.012 0.462 0.713 0.574 0.753 0.450 1.557 1.826 1.609 1.504 0.953 1.042 2.968 1.691 0.073 0.601 0.574 1.543 0.732 0.181 0.080 1175 chr2 183898970 183904562 + 0 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 1820 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 3.317 3.787 1.720 0.951 4.691 2.949 4.454 1.189 5.384 5.186 3.744 1.017 1.162 2.168 9.828 2.570 1.522 1.707 1.095 2.319 1.842 2.521 2.076 3.034 3.619 2.771 1.442 1.813 2.309 3.669 2.923 1.717 3.694 4.027 2.755 1.769 1.652 4.267 1.932 2.204 1.050 0.603 1518 chr5 10351730 10356409 + 0 NA intron (NM_001270661, intron 1 of 22) CpG 318 NM_001270660 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 4.827 3.760 2.144 3.030 11.914 4.994 7.047 2.431 13.588 11.256 9.823 2.689 2.247 2.158 5.012 5.301 3.125 3.947 2.610 5.115 3.100 4.430 2.610 4.167 6.528 8.283 3.969 2.657 2.416 4.086 4.408 4.697 3.828 16.537 5.049 2.959 4.969 5.782 4.655 1.786 2.104 1.366 756 chr16 75267098 75291939 + 0 NA intron (NM_001170715, intron 1 of 6) intron (NM_001170715, intron 1 of 6) 2706 NM_001170719 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.451 4.653 0.081 1.162 3.713 4.073 1.809 0.454 1.720 0.990 1.359 1.681 1.320 0.826 1.160 1.605 1.681 2.574 0.560 0.145 2.263 2.384 1.451 0.726 3.956 4.749 2.218 1.229 3.350 2.005 4.556 1.102 1.158 4.911 2.340 0.563 0.688 2.026 1.794 1.652 1.556 0.975 1410 chr3 146219547 146230115 + 0 NA Intergenic Intergenic -11053 NM_020359 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 5.768 0.300 0.851 1.586 2.814 0.244 3.081 3.004 3.398 2.389 2.916 1.242 0.620 3.048 1.164 2.266 1.016 1.082 0.261 0.013 1.775 1.163 0.029 0.129 0.192 0.661 0.487 2.509 2.241 0.938 0.203 0.030 2.159 2.525 1.216 0.682 0.328 0.061 0.882 0.158 0.014 974 chr19 2150013 2177397 + 0 NA promoter-TSS (NM_032482) promoter-TSS (NM_032482) -443 NM_032482 84444 Hs.713641 NM_032482 ENSG00000104885 DOT1L DOT1|KMT4 DOT1 like histone lysine methyltransferase protein-coding 2.028 1.191 2.151 0.851 2.325 1.824 1.850 0.595 4.550 2.175 1.485 0.820 0.602 2.244 1.287 1.509 0.879 1.552 0.443 0.867 1.685 1.528 1.174 1.335 3.262 1.174 0.549 0.942 4.069 2.505 3.767 0.931 1.201 4.543 1.843 0.706 2.682 3.418 2.088 1.054 1.715 0.855 545 chr13 113829906 113843247 + 0 NA intron (NM_018386, intron 9 of 14) intron (NM_018386, intron 9 of 14) 23608 NM_001256134 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 0.285 0.762 0.023 0.960 1.329 0.480 0.211 0.375 0.367 0.150 0.036 0.338 0.359 0.214 0.244 0.799 0.022 0.418 0.016 0.010 1.046 0.911 1.636 3.229 2.498 3.528 1.508 0.225 1.280 0.366 0.523 0.531 0.213 1.390 1.754 0.091 0.408 1.417 0.858 1.447 1.749 1.437 674 chr15 96855337 96906852 + 0 NA 3' UTR (NM_021005, exon 3 of 3) 3' UTR (NM_021005, exon 3 of 3) 4525 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 8.144 1.136 2.807 0.575 1.399 2.730 2.223 1.201 2.966 1.495 1.344 0.949 0.859 1.460 1.601 1.987 0.347 2.156 0.618 1.166 1.470 1.505 1.369 2.043 2.137 1.623 0.674 0.724 12.397 2.601 1.743 2.435 1.932 0.955 1.347 1.133 2.135 1.535 1.416 4.828 4.699 4.448 750 chr16 69372319 69375220 + 0 NA promoter-TSS (NM_032382) promoter-TSS (NM_032382) -243 NM_032382 84342 Hs.130849 NM_032382 ENSG00000213380 COG8 CDG2H|DOR1 component of oligomeric golgi complex 8 protein-coding 4.650 6.132 0.471 2.012 4.918 5.119 4.179 1.451 3.589 3.026 3.453 3.626 1.788 3.117 4.430 2.825 2.186 3.989 3.076 2.485 3.303 3.638 2.950 3.012 5.098 9.022 5.224 2.023 2.262 4.734 4.547 3.407 4.404 5.989 6.117 2.396 2.510 5.372 3.457 1.553 1.751 0.989 60 chr1 45155147 45189197 + 0 NA intron (NM_001145636, intron 6 of 11) intron (NM_001145636, intron 6 of 11) 31778 NM_001145636 339541 Hs.173679 NM_001004307 ENSG00000198520 C1orf228 NCRNA00082|p40 chromosome 1 open reading frame 228 protein-coding 0.224 0.378 0.268 0.524 0.648 0.081 0.521 0.259 3.458 0.701 0.468 0.407 0.174 0.331 0.475 0.725 0.042 0.243 0.326 0.086 0.313 0.235 0.132 0.281 0.473 0.202 0.085 0.437 0.525 0.400 0.389 0.197 0.715 0.549 0.521 0.281 0.880 0.348 0.260 0.112 0.237 0.202 797 chr17 8088365 8105120 + 0 NA Intergenic AluJr|SINE|Alu -3178 NM_017622 54785 Hs.129563 NM_017622 ENSG00000196544 BORCS6 C17orf59|PRO2472 BLOC-1 related complex subunit 6 protein-coding 0.944 1.485 3.859 0.649 1.890 1.714 0.934 0.235 2.218 1.376 1.308 0.918 0.472 0.645 0.737 0.906 0.444 0.981 0.728 0.406 0.461 0.472 0.463 1.301 2.604 0.627 0.422 0.543 1.060 3.561 3.349 0.811 0.907 2.305 2.926 0.367 0.670 3.360 1.771 0.682 0.596 0.425 859 chr17 41463098 41485801 + 0 NA Intergenic AluSp|SINE|Alu -1904 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 1.864 4.165 0.469 1.427 2.378 0.986 2.013 1.103 nan 2.759 1.426 2.085 2.094 2.426 2.297 2.953 0.783 2.044 0.295 0.354 2.564 2.346 0.997 3.725 2.282 0.959 0.548 0.963 2.060 4.442 1.902 1.593 2.142 2.944 2.209 1.724 1.224 3.085 1.478 1.332 1.365 0.882 644 chr15 67354259 67474097 + 0 NA intron (NM_005902, intron 1 of 8) MIRb|SINE|MIR -3876 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 1.638 2.587 0.672 1.218 2.493 3.351 1.453 1.541 6.978 4.134 1.115 1.875 1.306 2.186 0.971 2.943 0.829 2.949 0.227 0.115 2.089 1.872 0.667 2.101 3.145 1.387 0.623 1.098 1.136 3.870 4.343 0.659 1.646 2.209 3.183 1.035 1.283 4.373 1.165 1.939 1.088 0.695 73 chr1 59278779 59291528 + 0 NA intron (NR_108106, intron 1 of 1) MIRb|SINE|MIR 34330 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 2.364 2.290 1.608 1.946 2.912 2.935 3.761 1.343 nan 1.802 3.220 2.350 1.282 1.784 3.841 3.879 1.138 1.499 1.529 0.033 1.620 1.778 0.719 0.916 3.309 1.486 0.619 2.119 4.961 1.404 2.081 2.198 2.190 3.352 4.063 1.288 1.543 2.332 1.070 2.537 0.822 0.490 190 chr1 180133998 180141877 + 0 NA intron (NM_001004128, intron 2 of 12) intron (NM_001004128, intron 2 of 12) 13969 NM_002826 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 1.353 0.574 0.031 1.976 4.732 0.043 0.514 1.536 5.034 1.172 0.993 1.277 0.268 2.955 1.077 1.601 1.756 0.272 0.127 0.053 0.506 0.418 0.152 0.173 0.117 0.185 0.216 1.041 0.241 0.465 0.135 0.745 1.125 2.706 0.457 1.071 1.390 0.218 0.437 0.753 0.058 0.084 845 chr17 38459256 38509393 + 0 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 9851 NM_001145302 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 8.282 3.250 0.137 0.820 2.166 3.283 0.984 0.730 4.388 2.669 3.389 1.637 1.817 2.460 1.321 2.435 1.705 0.803 0.599 0.549 1.422 1.094 0.744 1.295 1.299 1.066 0.581 0.724 0.903 2.602 0.813 0.858 1.746 2.823 0.941 0.662 1.970 1.309 0.906 2.050 0.200 0.133 909 chr17 74862448 74871193 + 0 NA intron (NM_001199172, intron 1 of 16) intron (NM_001199172, intron 1 of 16) -1909 NM_198955 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B protein-coding 1.195 3.823 0.099 1.844 2.555 3.497 3.510 0.906 1.959 0.588 0.387 1.944 1.998 0.287 0.551 3.436 2.260 0.296 0.068 0.032 1.233 0.800 1.291 0.321 6.164 0.392 0.190 0.992 5.638 2.997 2.584 5.417 1.274 3.438 1.059 0.421 2.537 2.556 2.505 0.711 2.963 1.862 244 chr10 35414600 35420618 + 0 NA intron (NM_183060, intron 1 of 5) AluY|SINE|Alu 1224 NM_181571 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 2.385 4.193 0.608 0.597 2.516 7.493 1.905 0.815 2.489 1.833 2.127 0.483 0.824 1.231 1.608 2.345 0.759 2.787 0.335 6.154 1.071 1.298 2.586 2.851 1.733 4.138 1.646 1.338 1.927 4.329 3.078 2.438 2.876 4.261 10.158 1.299 1.580 4.814 1.893 1.454 2.306 1.536 1463 chr4 6910231 6920795 + 0 NA intron (NM_020773, intron 1 of 13) intron (NM_020773, intron 1 of 13) 4018 NM_020773 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 0.905 1.609 0.546 0.736 2.497 0.572 1.759 0.650 4.874 2.479 2.417 0.513 0.716 1.566 1.254 2.756 0.290 0.710 0.668 0.434 1.321 1.143 1.209 0.487 1.626 1.183 0.569 1.219 1.103 2.491 2.571 6.135 0.873 3.941 1.325 1.367 0.980 1.697 0.818 0.295 0.343 0.241 980 chr19 4122508 4147853 + 0 NA Intergenic AluSg|SINE|Alu -11054 NM_030662 5605 Hs.465627 NM_030662 ENSG00000126934 MAP2K2 CFC4|MAPKK2|MEK2|MKK2|PRKMK2 mitogen-activated protein kinase kinase 2 protein-coding 0.872 1.027 0.747 0.613 1.084 0.569 1.505 0.839 1.058 0.432 0.443 0.305 0.415 0.552 1.073 1.902 0.324 1.097 0.164 0.251 2.575 2.505 0.968 2.710 2.905 1.792 0.860 0.523 0.965 2.308 1.179 0.882 0.706 0.979 2.250 0.491 0.434 1.702 2.940 0.472 1.483 1.688 490 chr12 112034094 112039359 + 0 NA non-coding (NR_132311, exon 1 of 24) non-coding (NR_132311, exon 1 of 24) 751 NM_001310123 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 10.404 6.531 4.274 1.336 5.861 5.177 7.756 3.150 7.438 7.394 5.387 1.947 2.264 2.832 6.877 5.071 2.833 3.347 2.182 5.265 3.791 5.154 5.181 5.012 7.799 6.952 3.098 3.323 6.911 8.158 7.166 3.773 4.391 5.960 5.209 2.665 4.638 10.603 2.873 2.579 5.391 4.285 1668 chr6 35451502 35467142 + 0 NA intron (NM_003214, intron 1 of 12) intron (NM_003214, intron 1 of 12) 5539 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding 2.907 1.929 2.760 0.765 3.113 0.345 2.308 0.437 9.673 4.786 2.420 1.479 0.364 1.138 3.081 3.682 2.003 1.104 0.249 0.430 0.566 0.390 0.734 0.438 0.562 1.630 0.951 1.600 0.602 1.072 1.715 0.582 2.401 5.530 0.397 1.622 1.752 2.077 0.734 0.510 0.516 0.228 777 chr16 89968909 89974609 + 0 NA intron (NM_014972, intron 14 of 17) intron (NM_014972, intron 14 of 17) -12528 NM_002386 4157 Hs.513829 NM_002386 ENSG00000258839 MC1R CMM5|MSH-R|SHEP2 melanocortin 1 receptor protein-coding 0.216 0.402 0.186 0.365 0.749 0.067 0.370 0.104 1.184 0.298 1.006 1.054 0.084 0.038 0.119 0.479 0.084 0.290 0.052 0.212 0.242 0.203 0.198 0.255 0.171 0.053 0.041 0.186 0.159 0.217 0.317 0.042 2.041 8.802 0.097 1.433 2.610 0.175 0.366 0.042 0.030 0.027 1176 chr2 200319833 200328812 + 0 NA intron (NM_001172517, intron 2 of 11) CpG-15850 -1503 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 2.419 4.720 0.243 1.198 1.152 4.488 2.294 1.009 2.850 2.702 1.437 1.666 2.750 2.186 1.790 4.480 2.140 2.692 2.517 3.321 1.987 2.364 0.476 7.635 6.214 5.464 2.650 0.283 4.423 4.398 6.647 1.770 1.202 1.048 6.824 1.526 0.796 7.027 2.689 3.274 3.455 1.978 703 chr16 11675048 11682348 + 0 NA intron (NR_024320, intron 1 of 3) intron (NR_024320, intron 1 of 3) 1531 NM_004862 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 4.234 2.773 10.772 0.468 2.247 3.113 1.961 0.536 6.776 4.205 2.543 0.541 0.305 1.198 2.496 1.238 3.040 0.719 0.070 0.589 1.460 1.373 2.488 3.120 1.842 1.113 0.695 0.612 0.248 6.115 1.576 8.897 4.705 2.614 0.227 1.087 3.248 1.773 1.000 1.709 0.418 0.218 1904 chr8 134216379 134266066 + 0 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 37940 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 0.072 0.339 0.269 0.297 0.472 0.145 0.319 0.399 5.736 0.673 1.231 0.544 0.399 0.947 0.580 0.867 0.514 0.113 0.812 0.034 0.195 0.112 0.090 0.068 0.367 0.151 0.136 0.155 0.664 0.299 0.053 0.269 1.433 1.055 0.572 0.116 1.915 0.290 0.092 0.185 1.307 1.358 1372 chr3 46421243 46468998 + 0 NA intron (NR_125406, intron 1 of 3) LTR41|LTR|ERVL 3430 NR_125406 102724297 Hs.622021 NR_125406 LOC102724297 - uncharacterized LOC102724297 ncRNA 0.117 0.068 0.003 0.334 0.426 0.029 0.347 0.923 3.925 1.205 0.825 0.523 0.315 0.236 1.953 0.653 0.092 0.041 0.069 0.017 0.393 0.240 0.016 0.061 0.351 0.133 0.119 0.434 0.273 0.065 0.046 0.502 0.323 0.616 0.049 0.174 0.141 0.079 0.593 0.190 0.021 0.014 1158 chr2 113955675 113979235 + 0 NA Intergenic Intergenic -25649 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 0.430 0.677 0.016 0.387 0.426 0.339 0.606 0.251 0.705 0.272 0.429 0.502 0.115 0.348 0.480 0.576 0.194 0.542 0.093 0.059 1.816 1.224 0.328 0.469 0.458 0.303 0.221 0.251 0.557 3.484 0.439 1.461 1.046 0.287 0.432 0.218 0.133 0.638 0.969 0.174 0.090 0.039 512 chr12 125388768 125426361 + 0 NA Intergenic Intergenic 7471 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 3.787 2.158 2.893 1.107 3.284 3.814 4.215 2.626 5.890 3.483 2.312 1.921 1.363 3.418 2.804 3.675 1.933 2.172 1.004 1.842 3.124 3.343 1.110 5.368 4.498 3.253 1.291 2.651 2.880 5.011 3.651 2.288 3.026 3.318 6.510 2.200 1.571 4.261 1.973 1.992 1.845 1.635 1345 chr22 41486488 41490418 + 0 NA promoter-TSS (NM_001429) promoter-TSS (NM_001429) -64 NR_031694 100302237 NR_031694 ENSG00000100393 MIR1281 MIRN1281|hsa-mir-1281 microRNA 1281 ncRNA 10.305 6.620 3.194 1.160 5.189 7.402 10.656 2.837 14.305 11.956 13.003 2.234 1.502 2.211 8.929 2.658 3.507 2.053 2.321 5.221 1.880 3.496 2.838 4.800 6.960 5.835 2.177 2.996 4.252 6.169 2.807 4.334 6.763 9.090 4.523 1.680 5.891 7.946 4.689 3.489 2.403 1.505 1949 chr9 100612796 100617516 + 0 NA promoter-TSS (NM_004473) promoter-TSS (NM_004473) -381 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 3.010 2.281 1.576 0.162 1.230 0.060 8.577 0.701 0.891 0.463 0.467 1.232 0.724 0.036 2.149 0.150 0.671 0.079 0.029 0.191 0.047 1.558 0.229 3.492 0.308 0.149 0.278 0.046 3.651 2.631 0.048 2.413 0.196 0.079 0.192 7.267 0.201 1825 chr7 150943864 150950400 + 0 NA intron (NM_001003802, intron 2 of 13) intron (NM_001003802, intron 2 of 13) -1383 NM_001003801 6604 Hs.647067 NM_003078 ENSG00000082014 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 0.449 3.341 0.171 0.320 0.709 0.713 1.211 0.384 1.839 0.971 2.107 0.179 0.848 0.218 0.249 0.447 0.295 2.639 0.227 2.689 1.190 1.182 2.637 6.245 0.448 0.509 0.442 0.087 1.925 3.735 2.830 5.033 1.058 0.408 2.418 0.730 0.745 8.751 0.534 0.977 1.313 0.959 1756 chr7 55080696 55103844 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 5545 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 2.163 1.127 1.526 0.236 0.765 0.925 3.420 0.701 2.055 1.338 14.544 0.442 0.597 0.790 5.232 1.771 1.924 0.962 0.626 0.036 1.512 1.312 0.477 0.242 3.585 1.307 0.607 3.593 0.553 1.147 0.812 1.355 0.898 0.661 2.809 0.544 1.944 1.536 1.245 2.092 0.246 0.144 199 chr1 203480306 203484521 + 0 NA Intergenic Intergenic 19142 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 0.664 4.476 0.030 2.687 3.497 0.343 7.100 5.707 2.591 0.743 0.953 1.979 1.963 7.543 5.821 8.012 0.294 4.726 0.099 6.804 6.643 1.511 0.282 3.481 2.830 1.761 5.254 6.046 0.830 1.225 1.084 3.561 2.451 3.407 1.822 0.985 1.320 3.260 2.174 3.852 3.261 18 chr1 12647083 12681503 + 0 NA intron (NM_004753, intron 1 of 5) intron (NM_004753, intron 1 of 5) -7884 NM_001324370 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 2.330 0.820 0.413 0.821 1.356 0.858 1.317 0.619 2.672 1.519 1.950 0.939 0.748 1.669 2.272 1.681 1.445 4.054 0.300 0.242 0.472 0.352 0.414 1.325 3.743 0.286 0.188 0.595 1.270 3.110 1.933 1.397 2.505 0.525 2.473 1.075 2.615 0.514 0.452 1.467 0.609 0.555 1501 chr4 177691530 177717323 + 0 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 9473 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 0.500 1.136 0.062 0.972 2.019 3.615 0.208 0.566 1.475 1.068 0.503 1.061 0.921 0.783 0.366 2.038 0.184 1.550 0.070 0.038 0.792 0.496 0.058 0.262 0.039 0.208 0.075 0.746 1.496 1.910 0.551 0.662 1.173 0.909 0.115 0.910 1.046 0.208 0.258 1.551 0.011 0.004 1267 chr20 51099927 51111714 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -131557 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 0.140 0.317 5.519 1.037 1.241 0.145 1.310 0.054 2.444 1.846 0.424 0.570 0.532 0.317 0.252 0.066 0.231 0.095 0.042 0.014 0.017 0.012 0.050 0.463 0.852 0.046 0.033 0.150 0.237 0.062 0.049 0.014 0.085 3.301 0.038 0.324 0.049 0.044 0.127 0.374 0.010 0.021 914 chr17 77015647 77038846 + 0 NA intron (NR_049769, intron 1 of 3) AluY|SINE|Alu -3135 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and tumor necrosis factor related protein 1 protein-coding 0.222 3.053 0.019 0.580 0.568 0.844 0.451 0.245 4.171 1.153 0.190 0.164 0.326 1.989 0.448 0.716 0.107 1.348 0.835 0.018 0.915 0.559 0.063 0.328 7.393 0.892 0.398 0.501 1.000 1.757 0.180 0.228 1.698 0.446 0.008 0.301 0.709 4.708 0.606 0.648 0.265 0.129 1160 chr2 114038531 114047543 + 0 NA Intergenic Intergenic -6539 NM_013953 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 5.746 3.023 0.014 1.642 3.228 1.567 6.919 3.453 2.598 1.082 4.297 3.437 1.723 3.476 5.179 4.723 1.272 1.598 0.079 0.046 4.544 4.698 0.098 0.108 8.003 1.635 0.761 3.794 6.027 2.376 0.919 2.140 0.586 3.176 1.770 0.342 0.027 0.161 4.421 5.375 4.231 3.206 1426 chr3 169374566 169387649 + 0 NA intron (NM_004991, intron 1 of 16) intron (NM_004991, intron 1 of 16) 456 NM_004991 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 16.521 0.123 0.524 0.217 0.799 0.261 1.535 0.539 1.209 0.636 3.345 0.691 0.884 1.587 1.231 0.685 0.022 3.109 0.098 0.552 0.154 0.038 0.309 0.094 1.027 1.427 0.713 0.315 1.077 0.336 4.345 0.211 0.040 0.822 1.025 0.644 0.114 0.641 0.323 1.912 0.062 0.011 836 chr17 37616393 37621835 + 0 NA exon (NM_015083, exon 1 of 14) exon (NM_015083, exon 1 of 14) 1350 NM_015083 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 10.596 3.621 0.947 1.497 4.062 3.722 2.514 1.008 2.239 1.271 2.230 1.320 1.562 2.380 3.046 2.182 1.418 1.434 0.660 1.461 2.766 2.655 1.754 2.543 4.163 2.576 1.294 1.142 2.596 4.372 2.667 1.988 2.550 5.393 1.796 1.306 2.219 3.508 2.450 1.130 1.196 0.847 1114 chr2 27539091 27547688 + 0 NA intron (NM_002437, intron 2 of 7) AluSc8|SINE|Alu 2580 NM_002437 4358 Hs.75659 NM_002437 ENSG00000115204 MPV17 MTDPS6|SYM1 MPV17, mitochondrial inner membrane protein protein-coding 1.682 2.005 0.440 1.386 2.950 4.446 4.243 1.655 9.951 7.176 4.562 2.111 1.909 2.409 1.443 3.864 1.140 1.711 0.922 0.853 1.489 1.452 0.894 2.675 4.050 2.270 1.108 4.253 1.658 2.314 3.774 3.192 2.908 8.137 6.306 1.268 1.590 3.375 4.850 1.590 2.150 1.683 55 chr1 41957434 41976621 + 0 NA Intergenic Intergenic -16673 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 1.426 1.198 0.438 1.725 3.809 0.601 1.097 1.579 4.033 0.875 0.845 2.037 0.281 1.798 0.928 4.106 0.428 0.547 0.184 0.043 0.932 0.632 0.808 0.266 0.726 0.752 0.509 2.421 0.312 0.484 0.874 0.227 0.619 6.788 4.028 0.363 2.464 1.587 1.229 0.285 3.842 3.073 555 chr14 29037183 29050999 + 0 NA Intergenic Intergenic 190434 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 1.102 0.542 0.027 0.178 0.788 2.111 0.496 0.624 8.711 8.096 1.061 2.306 1.146 0.585 0.063 0.989 0.022 1.578 0.007 0.020 1.201 0.901 0.011 0.663 0.393 0.423 0.305 0.100 1.751 0.059 0.036 0.006 0.124 0.274 0.034 0.132 0.054 0.160 0.957 3.327 2.989 3.935 554 chr14 24860148 24869660 + 0 NA Intergenic LTR33|LTR|ERVL -3088 NM_025081 57523 Hs.288348 NM_025081 ENSG00000205978 NYNRIN CGIN1|KIAA1305 NYN domain and retroviral integrase containing protein-coding 2.527 0.220 1.972 0.378 1.499 0.087 1.941 1.417 9.978 3.646 5.750 0.969 0.025 1.066 2.189 1.749 0.503 0.724 0.105 0.023 0.095 0.030 0.171 0.520 0.126 0.120 0.066 1.686 0.357 1.194 0.315 0.332 2.026 1.409 0.088 1.105 1.132 0.765 0.133 0.051 0.030 0.027 1794 chr7 99095768 99105017 + 0 NA Intergenic AluSc8|SINE|Alu -1875 NM_145102 23660 Hs.110839 NM_014569 ENSG00000196652 ZKSCAN5 ZFP-95|ZFP95|ZNF914|ZSCAN37 zinc finger with KRAB and SCAN domains 5 protein-coding 1.950 2.745 0.436 0.808 2.311 1.696 2.574 0.720 2.806 2.173 3.000 0.983 0.855 1.412 1.982 2.105 0.696 1.925 1.157 1.249 0.785 0.616 1.556 1.854 3.874 1.878 0.903 0.872 2.661 2.421 6.312 1.368 1.603 3.049 3.720 1.035 1.715 3.973 2.146 1.156 2.810 1.612 1837 chr8 30354412 30407434 + 0 NA intron (NM_001008710, intron 5 of 8) MIRc|SINE|MIR -115194 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 1.161 0.106 0.701 0.301 0.802 0.169 0.113 0.943 3.105 1.648 1.594 0.851 0.448 1.181 0.801 0.471 0.212 0.355 0.693 0.021 1.713 1.067 0.028 0.161 0.110 0.032 0.024 0.797 0.123 1.605 0.049 1.033 0.637 0.519 0.119 0.364 0.495 0.050 0.337 0.065 0.017 0.010 229 chr10 3843094 3857236 + 0 NA Intergenic MIRb|SINE|MIR -22692 NR_027653 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 2.978 1.619 0.302 2.442 4.063 1.609 4.086 2.934 1.946 0.821 1.413 1.893 2.553 3.968 0.710 3.688 0.952 6.096 0.399 0.097 3.260 2.660 0.135 1.101 2.650 2.110 0.977 1.392 5.675 1.324 2.845 3.895 2.090 4.570 4.106 1.504 1.658 6.806 3.896 4.701 7.387 8.208 1775 chr7 74015391 74029752 + 0 NA Intergenic AluY|SINE|Alu -49420 NM_033000 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 0.577 1.014 0.207 0.582 1.244 0.087 3.193 1.140 3.063 0.762 2.738 1.227 0.459 1.744 1.845 4.222 1.610 0.910 0.083 0.077 2.471 2.288 0.317 1.745 0.869 0.226 0.180 1.410 0.425 2.095 0.256 1.199 2.233 2.287 0.799 0.803 1.978 0.654 1.469 0.946 0.024 0.035 626 chr15 37193895 37206795 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -21611 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 0.285 0.127 0.019 0.020 0.163 0.042 0.079 0.008 0.601 0.130 0.137 0.045 0.035 0.026 0.261 0.083 0.170 0.128 0.040 0.397 0.049 0.011 0.029 0.137 0.029 0.019 0.006 0.012 0.070 0.278 0.165 2.178 0.077 0.034 0.029 0.047 0.077 0.058 0.119 0.041 0.009 0.004 609 chr14 100737749 100754986 + 0 NA TTS (NM_003403) TTS (NM_003403) 2673 NR_106822 102466730 NR_106822 ENSG00000100811 MIR6764 hsa-mir-6764 microRNA 6764 ncRNA 0.702 0.495 0.947 0.077 0.404 1.125 0.571 0.282 3.023 1.331 7.064 0.594 0.207 0.203 0.301 0.724 0.255 0.274 0.202 0.274 0.836 0.691 0.350 0.574 0.466 0.374 0.232 0.971 0.393 0.884 1.723 0.226 0.946 0.380 0.643 0.311 0.464 0.538 0.561 0.508 0.217 0.151 522 chr13 41624840 41637289 + 0 NA Intergenic L2a|LINE|L2 -4633 NM_007187 11193 Hs.411300 NM_007187 ENSG00000120688 WBP4 FBP21 WW domain binding protein 4 protein-coding 2.726 2.967 2.043 0.673 2.297 1.445 1.048 1.109 7.409 5.253 1.984 1.115 0.931 1.532 1.680 2.333 0.684 1.018 0.854 1.223 1.550 1.515 0.949 3.100 2.819 2.403 1.117 1.170 2.462 2.153 1.907 0.985 2.489 2.442 2.180 1.382 2.673 2.341 1.104 1.662 1.685 1.278 1087 chr19 56055929 56065911 + 0 NA Intergenic Intergenic -4011 NM_001199824 100130827 Hs.712129 NM_001199824 ENSG00000231274 SBK3 SGK110 SH3 domain binding kinase family member 3 protein-coding 5.048 3.156 1.569 1.156 2.024 2.955 2.181 1.039 5.972 2.996 0.772 1.960 0.917 3.416 5.190 1.583 0.105 3.222 0.219 0.111 1.367 1.463 1.983 1.241 2.268 0.887 0.398 2.473 0.283 5.174 1.252 1.739 1.615 2.752 2.177 0.660 3.951 1.755 2.799 2.519 0.381 0.229 499 chr12 122062813 122073065 + 0 NA intron (NM_032790, intron 1 of 1) intron (NM_032790, intron 1 of 1) 3484 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 1.854 1.621 0.676 0.963 2.132 1.504 1.317 0.800 4.580 2.020 1.363 1.926 0.746 1.204 1.195 4.428 0.780 1.909 0.493 0.731 1.785 1.284 1.138 1.583 4.472 4.243 1.932 1.380 1.744 2.610 3.896 2.192 1.787 3.275 3.407 0.624 0.511 4.212 1.994 1.627 0.906 0.604 1412 chr3 151018499 151028262 + 0 NA intron (NM_023915, intron 1 of 2) MIR|SINE|MIR 11256 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 4.215 0.454 1.570 1.359 2.378 0.045 5.097 3.899 1.388 0.789 2.104 1.763 0.762 2.379 1.659 5.790 1.372 1.960 0.052 0.014 2.172 1.792 0.053 0.110 3.197 0.221 0.079 1.998 1.673 0.078 0.337 0.016 0.692 2.624 0.048 0.676 1.038 0.642 4.138 0.525 0.094 0.037 897 chr17 70113972 70123246 + 0 NA intron (NM_000346, intron 1 of 2) CpG 1448 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box 9 protein-coding 5.176 0.425 0.978 2.179 0.740 1.733 0.952 2.070 2.001 0.745 2.147 1.541 0.576 2.564 2.126 1.014 2.686 0.355 0.120 0.393 0.140 0.033 1.596 1.609 0.457 0.433 0.132 1.994 2.334 2.919 0.820 1.111 3.071 0.961 0.853 0.783 1.271 1.331 1.911 4.466 4.487 1851 chr8 54933152 54936914 + 0 NA promoter-TSS (NM_201437) promoter-TSS (NM_201437) -17 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 2.771 3.977 2.610 1.922 6.148 5.459 5.346 2.076 6.283 6.322 2.545 1.813 2.011 2.227 2.796 2.904 1.843 2.391 0.931 2.895 4.550 5.457 1.160 2.169 3.218 5.150 3.076 3.282 6.250 6.427 10.104 3.400 1.205 10.877 3.830 1.722 0.746 3.544 2.155 1.195 1.539 1.097 381 chr11 127905375 127925523 + 0 NA Intergenic Intergenic 476756 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 0.841 0.647 0.037 0.038 0.189 0.040 0.250 0.016 1.349 0.384 0.059 0.225 0.447 0.938 0.071 0.202 0.417 1.486 0.010 0.014 0.074 0.050 0.118 0.062 1.408 0.308 0.234 0.039 5.235 0.032 0.213 0.008 0.456 0.050 0.184 0.431 0.199 0.091 0.218 2.178 0.026 0.010 1882 chr8 102500264 102519747 + 0 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 5337 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 2.940 0.200 3.047 1.014 2.924 0.082 2.011 1.360 8.454 5.472 3.318 2.009 0.387 1.678 4.900 3.344 3.146 1.256 0.067 0.036 0.819 0.337 0.110 2.467 0.123 0.071 0.064 1.674 0.493 0.571 0.073 0.345 3.602 3.452 0.157 1.822 2.805 0.512 0.520 0.174 0.020 0.008 587 chr14 68400804 68412747 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 116466 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 0.476 0.386 1.492 0.271 0.334 1.603 1.957 0.785 4.112 2.028 5.835 1.230 0.936 0.966 1.315 0.474 0.827 2.096 0.086 1.675 2.859 1.945 0.183 1.288 0.113 0.105 0.053 1.538 1.280 0.734 0.485 1.434 2.324 0.217 2.090 0.102 1.851 0.535 2.508 0.924 0.106 0.082 353 chr11 67230166 67251367 + 0 NA Intergenic AluSx1|SINE|Alu -4018 NM_001078651 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding 1.591 1.482 0.577 0.636 1.858 1.849 1.366 0.975 5.627 2.769 2.108 1.095 0.539 1.450 2.488 1.677 0.581 2.524 1.191 0.312 0.989 0.759 0.696 0.822 3.172 1.065 0.639 1.198 0.998 2.244 1.469 2.111 2.307 2.146 2.033 1.195 1.844 6.060 3.008 0.526 0.266 0.184 1691 chr6 85343340 85367474 + 0 NA Intergenic L4|LINE|RTE -43769 NR_125876 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 0.511 0.236 0.033 0.330 0.454 0.089 0.485 0.310 0.710 0.211 0.459 0.327 0.411 0.441 0.333 0.118 0.004 2.541 0.037 0.011 0.597 0.341 0.079 0.042 0.737 0.410 0.273 0.028 0.268 0.168 0.288 0.089 0.075 0.157 0.023 0.385 0.038 0.116 0.039 0.408 0.060 0.022 1334 chr22 35746323 35784186 + 0 NA Intergenic AluY|SINE|Alu -11806 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 0.506 0.799 0.313 0.973 1.713 2.058 0.971 0.605 nan 0.621 0.483 0.534 0.221 0.585 1.252 1.286 0.578 1.563 0.079 0.352 0.710 0.496 0.587 2.063 1.232 1.858 0.929 0.250 0.747 1.765 0.984 1.145 2.255 4.019 1.092 0.485 0.586 1.854 1.356 0.581 0.246 0.134 1044 chr19 44028774 44039095 + 0 NA Intergenic Intergenic -2526 NM_014297 23474 Hs.7486 NM_014297 ENSG00000105755 ETHE1 HSCO|YF13H12 ETHE1, persulfide dioxygenase protein-coding 3.146 2.576 0.415 0.899 2.555 2.196 1.599 0.768 nan 1.238 2.388 0.753 0.858 0.910 2.437 1.030 1.490 1.364 0.826 0.336 1.302 1.055 2.165 0.894 3.466 0.880 0.520 0.770 0.814 3.983 6.307 2.110 1.308 2.608 0.765 1.165 1.550 2.535 0.991 1.379 1.180 0.759 382 chr11 128041812 128053615 + 0 NA Intergenic L2b|LINE|L2 344492 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 0.780 0.638 0.063 0.610 0.583 1.004 0.522 2.091 0.406 0.181 0.068 0.933 0.911 2.975 0.212 1.528 0.380 0.674 0.035 1.340 0.493 0.468 0.036 10.532 5.262 2.557 0.633 6.331 0.214 1.608 0.033 0.293 0.121 4.776 0.141 0.354 0.517 0.671 1.072 0.268 0.103 114 chr1 150846125 150853060 + 0 NA promoter-TSS (NM_178427) promoter-TSS (NM_178427) -348 NM_178427 405 Hs.632446 NM_001668 ENSG00000143437 ARNT HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 aryl hydrocarbon receptor nuclear translocator protein-coding 1.311 2.406 0.872 0.879 1.697 2.030 1.151 0.488 11.804 8.749 1.337 0.861 1.694 1.124 1.225 1.359 0.878 1.679 0.805 1.497 1.742 1.479 1.766 2.200 2.015 1.836 1.046 0.367 1.380 2.291 2.451 4.562 3.545 1.897 1.325 1.008 1.768 3.217 2.054 0.587 0.975 0.682 470 chr12 66131165 66137087 + 0 NA Intergenic Intergenic -84114 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 1.251 3.520 0.201 0.386 0.967 0.754 0.092 0.018 2.687 1.490 1.628 1.335 0.460 0.104 0.104 0.130 0.016 5.072 0.083 6.779 0.454 0.229 0.089 0.456 0.078 0.580 0.536 0.324 0.389 1.704 9.015 0.160 0.045 1.337 1.001 0.103 0.267 3.831 0.094 0.052 0.992 0.764 1793 chr7 99062099 99071777 + 0 NA Intergenic AluSx1|SINE|Alu -3114 NM_001003714 9551 Hs.521056 NM_004889 ENSG00000241468 ATP5J2 ATP5JL ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 protein-coding 1.174 2.260 0.860 0.817 1.985 1.605 3.065 0.914 3.743 1.721 3.256 1.029 1.215 1.676 2.529 2.624 1.008 2.020 0.765 1.261 0.866 0.629 1.401 2.869 3.009 1.775 0.972 1.021 2.444 2.557 4.841 1.932 2.281 2.206 2.772 1.819 1.765 4.059 2.357 0.816 2.366 1.705 57 chr1 42353574 42371170 + 0 NA intron (NR_038260, intron 1 of 2) AluSc8|SINE|Alu 22006 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 0.314 1.785 0.113 0.604 1.053 0.125 0.486 1.365 0.913 0.214 0.201 0.533 1.175 0.239 1.523 2.031 0.179 3.895 0.052 0.008 1.934 1.533 0.104 0.227 6.583 2.613 0.990 1.378 0.769 0.265 0.360 0.081 0.412 0.800 0.030 0.153 0.494 0.125 0.670 2.140 2.265 2.042 899 chr17 73099038 73139666 + 0 NA intron (NM_024585, intron 2 of 2) AluSx3|SINE|Alu 8538 NM_014595 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 1.196 1.877 0.146 0.609 1.333 0.946 1.134 0.956 4.829 2.529 0.982 1.388 0.925 1.167 1.058 2.547 0.397 1.101 0.732 0.280 1.810 1.709 0.560 3.168 1.822 1.101 0.520 0.574 1.465 4.226 1.246 0.658 1.298 1.844 1.418 1.016 0.922 1.263 0.956 1.003 0.405 0.232 1348 chr22 42223790 42243818 + 0 NA intron (NM_004599, intron 1 of 18) AluSp|SINE|Alu 4721 NM_004599 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 2.126 0.755 0.738 0.339 1.243 0.660 1.259 0.608 5.996 1.780 2.945 0.344 0.171 0.461 3.041 1.229 0.785 0.812 0.805 0.731 0.692 0.551 0.401 0.822 1.059 0.951 0.490 0.454 0.592 1.283 1.360 0.914 2.483 1.560 1.102 0.726 1.273 0.867 0.786 0.438 0.311 0.254 189 chr1 180119276 180128537 + 0 NA promoter-TSS (NM_002826) promoter-TSS (NM_002826) -62 NM_001004128 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 5.840 2.139 0.023 1.798 3.828 0.305 2.970 3.112 5.987 2.393 2.294 1.863 1.301 6.321 1.342 3.281 0.547 1.447 0.356 0.390 2.004 1.518 0.721 0.916 2.277 5.526 2.174 1.357 1.277 1.423 1.165 1.410 1.165 2.326 2.322 0.965 0.607 1.244 0.982 2.387 0.833 0.379 1217 chr20 5041095 5063506 + 0 NA intron (NM_001330987, intron 3 of 3) intron (NM_001330987, intron 3 of 3) 41433 NM_001330986 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 0.717 1.694 0.017 0.550 0.666 0.374 0.519 0.873 0.827 0.241 0.168 1.235 0.630 1.554 1.366 2.093 0.331 1.381 0.075 0.053 3.531 2.887 0.133 5.250 0.304 0.413 0.279 0.621 2.899 5.454 0.426 1.257 2.226 0.655 0.726 1.532 0.392 0.178 1.910 0.605 0.487 0.552 1153 chr2 102047823 102070562 + 0 NA intron (NM_001145664, intron 2 of 11) L1MD2|LINE|L1 31973 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 0.101 0.927 0.011 0.611 0.478 0.047 0.165 0.423 0.264 0.050 0.128 0.508 2.471 0.671 0.190 2.546 0.008 2.104 0.039 0.006 0.262 0.077 0.029 0.094 0.173 0.093 0.067 0.357 6.645 0.122 0.512 0.014 0.173 0.107 0.265 0.037 0.153 0.061 0.716 3.999 0.213 0.260 1795 chr7 99148151 99163480 + 0 NA promoter-TSS (NM_001085366) promoter-TSS (NM_001085366) -230 NM_138494 79027 Hs.599798 NM_024061 ENSG00000197343 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 0.428 2.168 0.805 0.766 1.521 0.593 2.914 1.445 2.485 1.804 3.538 1.604 1.838 1.878 1.206 4.048 0.711 2.058 1.055 0.976 1.300 1.347 1.003 2.416 3.219 2.381 1.072 2.196 3.398 2.278 4.549 0.360 1.244 2.461 4.771 1.538 1.621 2.405 2.730 2.373 6.975 6.144 1398 chr3 124702539 124707257 + 0 NA intron (NM_020733, intron 14 of 16) AluSz|SINE|Alu -51303 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 0.093 1.619 0.052 0.799 1.525 0.132 1.383 1.925 0.419 0.160 0.149 0.308 0.527 2.314 0.492 3.505 0.122 1.347 0.041 1.453 1.162 0.125 2.043 6.730 9.750 3.270 1.089 5.420 0.535 1.355 0.033 0.627 0.658 0.262 0.548 0.298 0.653 1.575 1.096 4.791 4.622 1452 chr3 189498110 189546403 + 0 NA intron (NM_001329146, intron 1 of 10) MER45A|DNA|hAT-Tip100 14807 NM_001329145 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 0.262 0.108 0.532 0.291 0.304 0.066 0.441 0.246 2.516 1.022 0.983 0.495 0.039 0.322 0.349 0.618 0.167 0.237 0.020 0.006 0.677 0.214 0.014 0.069 0.241 0.045 0.032 0.404 0.110 0.177 0.162 0.026 0.586 0.148 0.169 0.280 0.093 0.150 0.347 0.047 0.012 0.012 1116 chr2 28490070 28502757 + 0 NA intron (NR_137440, intron 10 of 13) AluSz|SINE|Alu 36913 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 0.823 3.521 1.236 3.824 3.965 1.099 2.042 1.795 2.551 0.836 0.500 2.282 2.907 2.388 2.840 5.117 0.822 4.219 0.094 0.065 2.395 2.158 0.612 5.803 6.433 2.318 1.157 1.463 5.367 2.268 2.123 2.309 1.653 2.945 4.874 1.781 0.730 1.801 2.269 2.590 3.128 3.314 1035 chr19 41722111 41740508 + 0 NA intron (NM_021913, intron 4 of 19) intron (NM_021913, intron 4 of 19) -1351 NM_001278599 558 Hs.590970 NM_001699 ENSG00000167601 AXL ARK|JTK11|Tyro7|UFO AXL receptor tyrosine kinase protein-coding 5.558 4.735 0.077 1.333 3.299 4.480 3.468 1.883 nan 0.548 0.686 1.209 2.849 1.750 1.283 4.255 0.784 3.856 0.065 0.128 3.379 4.057 3.041 0.927 9.304 6.427 2.164 1.345 6.269 4.541 11.853 0.317 0.458 4.769 1.781 0.606 0.239 3.348 1.290 3.062 5.698 4.004 726 chr16 30660949 30673957 + 0 NA exon (NM_024031, exon 12 of 12) exon (NM_024031, exon 12 of 12) -3387 NM_001105079 64319 Hs.247186 NM_022452 ENSG00000156860 FBRS FBS|FBS1 fibrosin protein-coding 4.292 4.444 1.207 0.843 2.341 2.771 2.577 0.659 4.335 3.273 2.604 0.927 1.045 2.119 3.724 1.619 1.149 1.677 4.130 1.673 1.531 2.006 2.521 2.480 3.685 2.809 1.303 1.587 2.367 3.689 5.810 2.991 3.206 2.922 2.925 0.838 1.696 4.955 2.022 1.774 1.952 1.140 571 chr14 50063825 50068807 + 0 NA intron (NM_152329, intron 1 of 3) intron (NM_152329, intron 1 of 3) 901 NR_037793 122769 Hs.451090 NM_152329 ENSG00000165501 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 5.746 3.929 2.574 1.488 5.319 5.681 8.936 2.591 10.679 5.673 6.103 2.991 2.256 4.376 4.179 3.206 1.471 4.121 2.190 1.748 5.611 6.829 1.639 5.110 4.222 6.035 2.936 3.768 4.643 5.603 4.983 3.925 3.699 7.168 6.735 2.653 2.410 6.726 5.185 4.014 2.171 1.675 809 chr17 27042771 27057810 + 0 NA promoter-TSS (NR_000014) promoter-TSS (NR_000014) -157 NR_000014 26809 NR_000014 ENSG00000238649 SNORD42A RNU42A|U42|U42A small nucleolar RNA, C/D box 42A snoRNA 4.128 6.656 1.893 2.369 6.377 5.643 5.318 2.748 12.700 9.446 5.706 2.716 3.236 4.342 5.425 4.881 2.513 1.658 1.524 1.954 3.214 3.737 3.298 7.566 11.025 7.845 3.614 2.435 5.044 7.395 4.183 2.843 4.202 8.500 4.839 3.799 3.167 9.619 4.382 2.351 3.259 2.000 551 chr14 21564097 21577410 + 0 NA intron (NM_001146683, intron 6 of 7) intron (NM_001146683, intron 6 of 7) 2110 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 1.368 1.354 0.438 0.327 1.126 5.425 1.272 0.747 5.144 2.200 2.057 0.571 0.577 0.754 1.101 1.140 0.372 1.603 1.068 2.981 1.214 1.372 1.178 12.062 2.171 1.340 0.814 1.481 1.876 5.279 1.805 3.377 2.675 1.177 2.320 1.970 0.883 3.646 1.587 1.164 0.891 0.648 1498 chr4 149361793 149367527 + 0 NA promoter-TSS (NM_001166104) promoter-TSS (NM_001166104) -988 NM_000901 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 1.815 0.894 0.055 0.200 1.320 6.651 2.111 2.146 1.312 3.938 0.865 0.330 1.664 0.203 0.640 0.438 0.088 0.024 0.913 0.390 0.101 0.018 0.579 0.589 0.409 0.040 0.384 0.767 2.194 1.673 0.268 1.092 0.081 0.363 0.461 0.396 0.014 0.917 0.099 0.026 225 chr1 246459874 246491336 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 105109 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 0.096 0.247 0.022 0.201 0.295 0.042 0.104 0.100 0.173 0.101 0.128 0.056 0.053 0.065 0.126 0.646 0.003 0.979 0.038 0.031 0.647 0.386 0.057 11.070 0.096 0.051 0.027 0.132 0.509 0.214 0.011 0.163 0.708 0.102 0.144 0.946 0.095 0.031 0.287 0.043 0.053 0.016 1029 chr19 39460905 39469763 + 0 NA intron (NR_104026, intron 1 of 5) HAL1|LINE|L1 1119 NR_104026 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 3.555 2.689 0.293 0.967 1.240 0.084 0.714 0.648 0.667 0.363 0.214 0.646 0.974 0.037 0.163 0.612 1.534 1.632 0.024 1.454 0.171 0.097 2.258 1.088 3.104 3.994 2.010 0.206 1.049 6.369 7.868 0.863 0.565 1.226 2.056 0.028 0.329 3.034 0.621 0.025 1.125 0.557 635 chr15 60683041 60719945 + 0 NA Intergenic Intergenic -11308 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 3.776 2.519 2.747 1.018 2.136 2.529 1.595 1.246 4.465 2.177 1.706 2.122 1.054 1.901 0.564 1.908 1.335 1.899 0.068 0.259 2.013 2.371 1.063 2.374 2.814 1.122 0.534 1.135 5.297 3.420 1.764 0.787 2.221 2.676 2.908 1.909 1.496 1.744 1.759 1.699 2.706 2.546 962 chr19 749779 755591 + 0 NA intron (NR_135168, intron 1 of 3) intron (NR_135168, intron 1 of 3) 1572 NR_135168 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 3.687 1.567 8.032 1.251 3.006 10.050 1.890 2.253 6.740 5.360 2.308 1.421 0.811 3.714 3.120 3.546 1.075 1.145 1.010 0.192 4.556 6.750 0.370 7.800 17.218 2.625 1.107 3.448 6.555 8.150 2.512 3.975 4.035 5.868 5.379 2.641 2.821 1.567 3.382 2.700 8.766 7.082 1817 chr7 142489979 142512322 + 0 NA Intergenic Intergenic 22393 NR_001296 154754 Hs.449281 NR_001296 PRSS3P2 T6|TRY6 protease, serine 3 pseudogene 2 pseudo 1.519 0.294 0.025 0.026 0.072 0.033 0.908 0.019 0.193 0.241 0.145 0.033 1.132 0.098 2.649 0.543 0.013 4.237 0.606 0.019 0.055 0.042 0.026 0.066 0.266 0.062 0.018 0.067 0.184 0.076 0.067 0.081 0.708 0.042 0.050 0.262 1.177 0.276 0.361 3.466 0.037 0.018 368 chr11 77732761 77763869 + 0 NA intron (NM_001203261, intron 2 of 2) intron (NM_001203261, intron 2 of 2) 8922 NM_001282406 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 0.649 0.915 0.046 0.481 1.046 0.083 0.626 0.858 nan 1.186 2.650 0.796 0.497 2.425 1.597 2.424 0.951 1.001 0.158 0.022 1.677 1.262 0.184 0.267 2.508 3.011 1.260 1.608 1.283 0.549 0.636 1.538 1.288 0.851 1.926 0.271 0.258 0.794 1.233 1.010 0.054 0.021 1067 chr19 47596166 47618728 + 0 NA intron (NM_015168, intron 2 of 14) AluSx|SINE|Alu 9562 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 5.397 3.364 0.655 1.151 3.045 2.407 3.551 1.277 nan 5.180 6.478 1.605 1.017 2.612 2.978 2.569 2.444 3.844 2.299 1.860 1.681 2.133 2.400 3.058 3.120 2.443 0.943 2.357 1.913 3.682 2.070 2.081 1.892 4.210 1.503 2.584 4.049 2.194 1.323 1.436 1.409 1.028 1984 chr9 137295839 137307277 + 0 NA intron (NM_001291921, intron 3 of 8) MIRb|SINE|MIR 3130 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.440 2.479 0.049 0.915 1.795 2.366 0.783 0.268 4.459 1.372 0.469 1.245 1.089 0.418 2.224 2.279 1.194 2.193 0.105 0.093 3.019 3.564 0.226 9.539 0.884 0.776 0.425 0.456 0.960 5.170 0.352 0.905 3.078 3.487 2.320 2.020 4.386 0.354 1.463 0.603 0.053 0.027 152 chr1 154965477 154999792 + 0 NA intron (NR_049765, intron 2 of 3) intron (NR_049765, intron 2 of 3) 7528 NR_045515 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 2.194 2.462 1.597 1.223 2.943 5.951 2.564 1.203 6.240 3.508 2.963 1.497 1.382 1.941 1.443 2.118 1.028 1.714 1.785 2.895 2.038 2.005 1.189 5.151 2.440 1.157 0.568 1.436 0.700 4.562 2.149 4.764 6.298 2.461 1.897 2.432 2.895 6.506 2.258 0.606 0.751 0.354 1975 chr9 130557339 130567687 + 0 NA Intergenic Intergenic -2624 NM_004957 2356 Hs.335084 NM_004957 ENSG00000136877 FPGS - folylpolyglutamate synthase protein-coding 1.729 1.901 0.275 1.044 2.648 1.129 5.619 1.476 4.608 2.008 2.542 1.074 0.897 2.131 2.262 1.922 0.867 1.149 0.377 0.375 2.266 2.593 0.904 1.199 1.815 1.613 0.722 1.393 1.134 1.561 1.580 0.725 2.923 2.570 1.036 0.767 2.109 1.561 2.072 0.909 0.778 0.466 1824 chr7 150062825 150077965 + 0 NA 3' UTR (NM_001099695, exon 3 of 3) 3' UTR (NM_001099695, exon 3 of 3) 2137 NM_014374 29803 Hs.647086 NM_013400 ENSG00000214022 REPIN1 AP4|RIP60|ZNF464|Zfp464 replication initiator 1 protein-coding 2.910 3.292 2.197 0.917 3.444 3.640 4.646 0.641 2.989 2.344 4.205 1.004 1.293 1.590 3.284 1.125 0.809 2.425 2.980 3.814 1.941 2.371 2.848 3.102 4.336 2.051 0.911 1.990 2.020 3.640 2.401 3.543 2.343 3.327 3.038 1.225 2.447 5.290 2.901 0.444 1.757 1.052 682 chr16 1121481 1142345 + 0 NA TTS (NM_001172560) TTS (NM_001172560) 3132 NM_001053 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 0.104 0.100 0.003 0.073 0.086 0.024 0.052 5.945 1.270 0.087 0.238 0.096 0.052 0.032 0.133 0.009 0.080 2.421 0.020 1.227 1.299 0.053 0.844 0.096 0.142 0.067 0.121 0.124 2.919 0.075 0.980 0.200 0.200 0.093 0.135 0.060 0.167 0.205 0.022 0.083 0.044 1202 chr2 239191223 239201885 + 0 NA intron (NM_022817, intron 1 of 22) intron (NM_022817, intron 1 of 22) 653 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 1.117 1.128 0.770 0.571 1.895 0.815 1.263 0.462 12.525 5.917 3.218 1.602 0.546 1.025 2.077 1.595 0.445 0.313 1.350 0.375 1.511 1.348 0.097 6.279 0.779 0.498 0.359 1.317 0.301 6.282 0.722 1.710 3.688 6.523 0.919 2.307 4.495 1.003 0.488 1.820 0.140 0.124 742 chr16 58024832 58036105 + 0 NA exon (NM_020807, exon 2 of 2) exon (NM_020807, exon 2 of 2) -3035 NM_001330568 79650 Hs.408702 NM_024598 ENSG00000103005 USB1 C16orf57|HVSL1|Mpn1|PN|hUsb1 U6 snRNA biogenesis phosphodiesterase 1 protein-coding 1.021 2.027 0.524 0.555 2.385 1.564 3.621 1.497 5.499 2.922 6.557 2.430 0.793 1.932 2.350 3.484 1.603 0.499 0.763 0.259 2.078 2.271 0.814 1.145 2.073 1.899 1.201 1.370 0.478 1.682 1.018 1.020 1.798 3.556 0.830 0.381 0.875 1.732 0.602 0.561 0.395 0.204 1637 chr6 21584941 21601127 + 0 NA promoter-TSS (NM_003107) promoter-TSS (NM_003107) -938 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box 4 protein-coding 5.018 1.898 2.466 0.798 2.849 4.056 3.246 1.350 7.052 5.474 6.941 2.023 1.296 1.229 2.421 1.402 0.985 1.439 2.868 2.820 2.287 3.376 0.395 0.848 0.956 0.776 0.464 2.108 1.035 2.278 3.687 1.545 2.495 4.171 1.332 1.436 2.149 3.425 1.389 1.978 1.395 1.402 1136 chr2 70308360 70324296 + 0 NA TTS (NM_006196) TTS (NM_006196) 1743 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding 2.465 3.327 2.383 1.620 3.789 5.473 5.418 2.025 10.878 6.247 4.378 2.498 1.959 3.085 2.904 3.950 1.839 2.446 2.945 3.521 3.534 4.133 1.864 4.692 4.336 2.460 1.145 3.119 4.026 5.209 3.476 2.897 3.880 5.169 3.634 2.655 2.729 5.518 2.096 2.703 2.513 2.617 1966 chr9 123155405 123167982 + 0 NA intron (NM_001011649, intron 34 of 36) L2b|LINE|L2 -154365 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 0.086 2.544 0.010 0.574 0.888 0.419 0.187 0.602 0.370 0.162 0.230 0.383 1.514 0.548 1.275 1.983 0.221 3.409 0.039 0.026 2.856 2.795 0.099 8.079 0.637 0.402 0.192 0.229 1.540 2.334 0.192 0.127 1.166 0.403 0.863 0.666 0.093 0.187 0.747 1.752 0.073 0.036 2007 chrX 153594172 153609322 + 0 NA intron (NM_001110556, intron 1 of 47) intron (NM_001110556, intron 1 of 47) 1259 NM_001110556 2316 Hs.195464 NM_001456 ENSG00000196924 FLNA ABP-280|ABPX|CSBS|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD filamin A protein-coding 6.467 5.329 1.021 0.764 1.831 3.342 2.630 1.086 3.944 3.059 1.683 1.436 0.912 1.671 1.283 3.207 0.706 1.400 1.752 0.576 2.925 3.749 1.725 2.371 6.110 2.670 0.958 2.054 4.961 3.394 3.136 0.609 1.548 3.295 1.753 0.589 1.540 5.085 2.105 3.508 2.467 1.563 120 chr1 151040719 151045088 + 0 NA promoter-TSS (NM_001323913) promoter-TSS (NM_001323913) -151 NM_001323913 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor beta subunit 2 protein-coding 3.186 4.202 2.719 2.423 4.784 5.966 3.087 2.218 38.323 29.735 3.250 2.970 3.753 2.828 3.105 6.325 2.121 3.288 4.341 4.250 5.654 8.484 2.313 9.360 6.909 5.016 2.021 2.781 4.435 4.565 3.755 9.296 11.256 5.639 4.873 2.286 4.964 8.045 5.603 2.781 2.807 2.258 1717 chr6 151709166 151715970 + 0 NA 5' UTR (NM_020861, exon 1 of 3) 5' UTR (NM_020861, exon 1 of 3) 267 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 2.417 3.411 2.247 0.975 3.485 4.958 3.759 0.890 nan 5.718 4.333 0.838 1.042 1.570 3.120 2.249 2.686 2.177 1.140 2.891 2.133 2.700 3.477 3.250 4.981 5.400 2.305 2.503 2.531 3.803 8.220 1.219 2.268 5.783 3.142 1.673 2.606 11.420 2.031 2.331 2.996 2.120 111 chr1 150476395 150492677 + 0 NA intron (NM_004425, intron 7 of 9) intron (NM_004425, intron 7 of 9) -3697 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA 0.474 0.645 0.080 0.466 0.690 0.487 0.435 0.400 15.723 5.973 0.761 0.414 0.624 0.468 0.303 0.814 0.117 0.850 0.525 0.400 0.854 0.448 0.455 0.772 0.588 0.592 0.365 0.104 0.411 0.870 0.981 7.203 1.441 0.584 0.527 0.434 0.415 1.332 0.765 0.186 0.538 0.335 1827 chr7 157091764 157111949 + 0 NA Intergenic MER41B|LTR|ERV1 -27854 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 1.308 1.773 0.018 0.403 0.780 0.088 0.411 1.490 1.491 0.318 0.285 0.825 0.375 0.976 1.483 2.000 0.830 1.552 0.045 0.062 2.460 2.165 1.925 0.557 7.667 4.169 1.850 0.543 4.149 0.351 2.219 0.055 1.032 1.003 0.262 0.299 0.271 0.565 1.877 1.913 3.304 2.949 938 chr18 3407256 3416179 + 0 NA promoter-TSS (NM_174886) promoter-TSS (NM_174886) -208 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 1.187 0.111 1.724 1.400 2.287 0.173 2.336 0.308 5.055 2.131 2.326 1.508 0.686 0.806 6.902 1.047 1.220 1.302 0.713 0.062 0.781 0.512 0.430 3.499 0.475 0.209 0.131 0.879 0.125 2.385 0.233 0.486 1.278 3.128 0.073 0.671 4.354 1.124 0.293 0.019 0.052 0.017 349 chr11 67052991 67059305 + 0 NA promoter-TSS (NR_030767) promoter-TSS (NR_030767) -614 NM_001347901 338692 Hs.438673 NM_207354 ENSG00000172932 ANKRD13D - ankyrin repeat domain 13D protein-coding 2.688 4.060 0.903 0.404 2.775 4.990 1.446 0.718 7.531 3.476 5.346 1.647 1.793 2.295 3.348 2.388 1.332 6.345 1.832 1.751 2.005 2.601 2.570 2.457 8.315 3.922 1.556 1.019 3.935 4.200 4.259 3.436 3.636 2.921 3.357 1.395 2.354 12.228 4.374 2.696 1.541 0.780 1563 chr5 72742043 72748076 + 0 NA promoter-TSS (NM_004472) promoter-TSS (NM_004472) -707 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 2.864 1.984 0.944 0.460 2.181 1.766 0.395 1.049 2.235 0.521 3.021 1.171 0.585 0.044 1.496 1.252 0.691 1.716 0.215 1.375 0.847 0.683 1.343 0.640 6.217 3.308 1.560 0.396 3.558 3.567 7.906 0.655 0.055 3.805 1.108 0.481 0.411 6.602 0.235 0.024 5.796 5.094 929 chr17 79847438 79857555 + 0 NA exon (NM_001289418, exon 2 of 3) exon (NM_001289418, exon 2 of 3) 2693 NM_001002249 51529 Hs.534456 NM_016476 ENSG00000141552 ANAPC11 APC11|Apc11p|HSPC214 anaphase promoting complex subunit 11 protein-coding 1.713 3.295 0.392 1.204 2.792 3.736 1.835 0.741 5.047 2.537 1.927 1.802 1.380 0.958 1.131 3.809 0.831 1.966 0.589 1.089 0.995 1.191 1.392 2.887 3.104 1.840 0.771 0.979 2.996 2.907 3.297 1.185 2.030 4.590 2.577 1.342 1.587 3.666 1.195 3.311 1.747 1.123 106 chr1 145609381 145623222 + 0 NA intron (NM_014455, intron 1 of 8) L1P4|LINE|L1 -5257 NM_006468 10623 Hs.515768 NM_006468 ENSG00000186141 POLR3C RPC3|RPC62 RNA polymerase III subunit C protein-coding 1.140 1.229 1.304 1.301 2.831 1.489 1.311 1.097 4.324 3.272 1.287 1.872 2.030 2.165 1.625 2.597 0.443 2.671 0.710 0.801 2.270 2.266 0.656 2.291 0.818 1.321 0.723 0.840 0.794 1.206 1.297 0.431 3.096 2.300 1.582 0.788 1.206 1.704 3.315 1.108 1.079 0.721 407 chr12 10316606 10326223 + 0 NA intron (NM_002543, intron 2 of 5) (CAAAA)n|Simple_repeat|Simple_repeat -1784 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 0.070 0.098 6.505 0.110 0.200 0.078 0.152 0.083 0.364 0.012 0.509 0.074 0.398 0.108 0.062 0.086 0.028 0.045 1.155 0.040 0.844 0.056 0.033 0.064 0.223 0.237 0.071 0.065 0.154 0.096 0.009 0.026 0.899 1.423 0.008 0.031 0.036 0.011 1728 chr7 5565133 5579385 + 0 NA Intergenic Intergenic -2027 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 6.742 4.287 2.086 0.578 2.265 3.921 3.512 1.208 nan 3.644 4.554 0.820 1.228 1.633 4.760 1.360 1.332 1.838 0.969 1.894 2.546 3.812 1.665 2.366 5.484 3.529 1.479 1.987 3.156 4.381 2.516 1.422 2.484 3.489 3.881 1.685 2.567 7.312 2.420 2.381 1.778 1.177 62 chr1 47644441 47659502 + 0 NA intron (NM_005764, intron 2 of 3) AluSq2|SINE|Alu 3800 NM_005764 10158 Hs.431099 NM_005764 ENSG00000162366 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 1.057 0.171 0.074 1.317 1.275 0.354 0.658 1.041 3.601 0.764 0.182 0.086 0.166 4.459 0.147 1.177 0.143 0.264 2.059 0.230 1.030 0.688 0.210 0.127 0.208 0.236 0.161 1.619 0.295 0.766 0.124 1.127 2.477 0.288 0.260 0.527 0.219 0.410 0.338 0.104 0.164 0.037 1330 chr22 30571355 30660660 + 0 NA Intergenic T-rich|Low_complexity|Low_complexity 26833 NM_002309 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 7.612 1.378 0.279 1.334 2.544 3.818 1.780 1.580 nan 4.509 0.896 1.902 1.237 1.512 2.925 2.125 0.600 1.682 1.948 0.041 0.718 0.526 0.386 5.078 5.590 1.539 0.632 1.060 1.132 4.107 1.964 1.578 1.460 3.129 2.663 0.791 1.207 7.321 2.492 1.505 3.688 3.246 275 chr10 115715726 115720630 + 0 NA Intergenic Intergenic -85628 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.850 0.479 6.098 1.325 2.208 0.013 3.755 2.574 8.883 5.117 2.987 2.721 1.546 2.675 0.137 4.947 0.390 0.749 3.592 0.029 3.002 2.768 0.375 0.110 0.233 0.122 0.155 4.572 0.225 0.725 0.335 1.546 5.778 5.617 0.935 1.251 0.165 1.365 0.139 0.106 0.031 1814 chr7 139469315 139478996 + 0 NA intron (NM_001113239, intron 1 of 14) intron (NM_001113239, intron 1 of 14) 3538 NM_001113239 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 1.828 4.015 0.186 2.683 5.758 0.169 4.454 0.968 6.010 3.426 3.160 2.259 1.961 1.917 2.403 3.729 2.028 4.085 3.112 0.502 3.486 4.618 0.562 4.363 7.221 1.102 0.653 2.697 5.898 2.980 2.625 2.939 3.029 3.931 8.384 0.643 0.505 1.630 4.513 2.361 0.291 0.163 202 chr1 211803732 211828994 + 0 NA intron (NR_131925, intron 2 of 2) intron (NR_131925, intron 2 of 2) 3213 NR_131925 105748977 Hs.553186 NR_131925 LINC01693 - long intergenic non-protein coding RNA 1693 ncRNA 0.268 1.034 0.065 0.375 0.395 0.387 0.211 1.267 0.640 0.127 0.452 0.818 0.372 1.023 1.155 3.326 0.793 1.601 0.056 0.050 3.625 2.448 0.090 0.485 0.270 0.158 0.114 0.831 0.524 1.402 0.277 1.287 1.442 0.352 1.133 0.708 0.752 0.149 1.311 0.526 0.080 0.091 1890 chr8 119848842 119864085 + 0 NA Intergenic Intergenic 107920 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 0.345 1.414 0.024 0.449 0.849 0.243 0.815 1.910 2.850 0.587 0.720 1.754 0.139 0.815 1.014 1.293 0.150 0.484 0.146 0.598 0.185 0.005 0.117 0.200 0.265 0.250 0.337 0.558 0.198 0.047 0.037 0.293 0.597 0.097 1.519 0.602 0.118 0.632 0.545 0.042 0.013 588 chr14 68427810 68446423 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 146807 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 0.723 0.152 3.383 0.152 0.447 0.182 1.669 0.656 2.042 0.792 3.082 1.148 0.152 0.440 0.559 0.490 0.298 0.293 0.059 0.546 0.639 0.221 0.032 1.110 0.054 0.006 0.013 0.753 0.139 0.272 0.077 0.030 1.875 0.333 0.139 0.525 1.958 0.100 0.306 0.309 0.015 0.008 529 chr13 73890876 73947759 + 0 NA Intergenic L1MEe|LINE|L1 -219064 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 1.559 0.116 0.047 0.151 0.177 0.051 0.251 0.544 4.494 1.213 0.494 0.291 0.042 0.807 0.900 0.332 0.107 0.499 0.041 0.010 0.888 0.416 0.060 0.072 0.172 0.034 0.033 0.436 0.246 0.500 0.033 1.232 0.889 0.078 0.018 1.047 0.512 0.039 0.035 0.130 0.012 0.003 486 chr12 104648042 104704852 + 0 NA intron (NM_001093771, intron 3 of 16) L2|LINE|L2 -4013 NM_001261446 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 0.910 3.084 0.696 1.685 3.361 2.313 2.248 1.211 2.984 1.287 0.889 1.069 0.515 2.376 5.171 4.296 0.533 3.119 0.167 0.395 4.677 5.315 1.344 3.996 3.972 1.326 0.602 1.378 5.447 4.010 1.017 0.949 4.412 2.687 5.255 2.115 5.050 1.952 1.128 0.582 1.733 1.661 806 chr17 18620344 18630267 + 0 NA promoter-TSS (NM_001037330) promoter-TSS (NM_001037330) -97 NM_001037330 147166 Hs.164324 NM_001037330 ENSG00000108448 TRIM16L TRIM70 tripartite motif containing 16-like protein-coding 1.300 3.985 0.945 1.988 2.413 4.416 1.585 1.684 4.016 2.029 5.658 4.563 1.182 3.276 8.422 4.509 2.253 4.326 0.071 0.098 3.316 4.368 0.052 12.407 10.244 2.647 1.321 1.319 6.456 8.680 1.329 1.262 4.769 2.347 2.598 5.791 3.989 1.296 2.707 6.590 1.899 1.142 937 chr18 3379313 3390100 + 0 NA Intergenic MER57B1|LTR|ERV1 -27219 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 0.188 0.215 0.064 0.088 0.241 0.156 0.119 0.039 0.361 0.097 0.144 0.245 0.044 0.082 6.257 0.197 0.500 1.414 0.045 0.026 0.059 0.067 0.054 7.365 1.020 0.114 0.111 0.014 0.130 0.808 0.124 0.066 0.670 0.305 0.017 0.327 5.280 0.268 0.147 0.020 0.027 0.010 1951 chr9 101007944 101020350 + 0 NA exon (NM_001267571, exon 2 of 13) exon (NM_001267571, exon 2 of 13) 3856 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1.642 1.698 0.646 1.703 3.342 0.911 6.242 1.795 3.498 1.818 2.089 1.925 1.099 2.950 2.973 4.992 1.406 1.194 0.270 0.291 6.729 8.216 1.473 1.250 4.738 2.507 1.230 1.772 6.142 1.673 1.612 2.589 4.479 1.968 1.678 1.973 1.284 1.097 2.052 2.983 6.764 6.331 642 chr15 67219547 67229170 + 0 NA intron (NR_135687, intron 2 of 2) intron (NR_135687, intron 2 of 2) 24495 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.784 0.670 0.444 1.043 1.493 5.540 0.823 1.621 4.389 1.424 1.339 2.013 0.600 0.807 1.761 2.262 1.376 1.109 0.415 0.043 0.923 0.535 0.718 1.952 0.260 0.193 0.106 0.814 0.376 3.985 0.226 3.762 3.632 1.023 1.611 2.532 4.262 0.573 0.305 0.579 0.036 0.031 1618 chr6 7106183 7167890 + 0 NA intron (NM_001003700, intron 1 of 11) intron (NM_001003700, intron 1 of 11) 28950 NM_001003698 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 0.584 0.660 0.513 0.439 1.112 0.407 0.480 0.403 4.825 1.976 1.606 0.448 0.184 0.685 0.731 1.023 0.407 0.345 0.258 0.380 0.888 0.664 0.266 0.299 0.518 0.553 0.275 0.378 0.577 0.940 1.059 0.362 0.982 1.564 0.709 0.597 1.067 0.764 0.427 0.321 0.132 0.066 1632 chr6 19462940 19480417 + 0 NA Intergenic Intergenic 21626 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 0.654 0.177 0.245 0.303 1.152 1.269 0.411 0.194 2.911 1.366 3.854 0.979 0.310 0.251 0.186 1.006 0.299 0.064 0.052 0.047 0.577 0.343 0.021 0.532 0.686 0.073 0.012 0.311 0.074 0.332 0.057 0.423 0.766 1.194 0.016 0.567 0.646 0.103 0.707 0.460 0.010 0.012 1077 chr19 49456925 49474343 + 0 NA TTS (NM_138764) TTS (NM_138764) -2932 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 2.964 5.174 0.288 0.710 1.824 3.588 1.672 0.950 nan 1.976 1.700 0.748 0.818 1.460 4.025 1.847 0.734 4.191 1.458 1.105 1.748 2.214 0.618 4.839 4.593 2.980 1.154 0.476 3.822 6.515 2.243 3.061 2.266 1.465 1.893 2.601 2.170 2.928 1.491 2.076 2.579 1.806 997 chr19 16570831 16583823 + 0 NA intron (NM_021235, intron 1 of 22) L2a|LINE|L2 5496 NR_047665 58513 Hs.654639 NM_021235 ENSG00000127527 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15 like 1 protein-coding 0.457 0.634 0.220 0.438 1.468 0.313 1.000 0.350 nan 0.663 0.719 0.204 0.226 0.601 1.117 0.888 0.265 0.668 0.206 0.139 1.264 0.786 0.791 0.637 0.559 0.401 0.301 0.326 0.293 0.572 1.200 2.219 0.519 1.153 0.937 0.313 0.523 0.837 0.893 0.234 0.146 0.055 928 chr17 79815668 79831397 + 0 NA Intergenic Intergenic -4988 NM_000918 5034 Hs.464336 NM_000918 ENSG00000185624 P4HB CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase subunit beta protein-coding 3.029 6.594 1.566 1.326 4.935 10.785 3.123 1.475 7.879 5.779 3.637 2.433 2.036 2.930 1.498 3.821 1.185 2.435 2.604 2.238 2.013 2.894 2.838 4.218 4.833 3.567 1.289 1.199 3.696 5.078 6.429 2.403 4.377 6.531 3.080 2.313 2.528 8.432 1.655 3.670 2.699 1.424 858 chr17 41432820 41448730 + 0 NA Intergenic Intergenic 25491 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 3.823 5.505 1.444 1.865 3.893 2.541 2.836 1.933 7.765 5.591 2.200 1.735 2.594 2.541 2.921 4.274 1.005 2.041 0.917 0.887 2.218 2.717 0.926 3.739 5.423 2.701 1.207 2.108 4.972 4.674 1.356 1.486 2.154 5.307 4.902 1.694 1.325 3.161 3.110 2.328 1.984 1.409 521 chr13 41545085 41616813 + 0 NA intron (NM_172373, intron 1 of 8) intron (NM_172373, intron 1 of 8) 12559 NM_172373 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 - E74 like ETS transcription factor 1 protein-coding 0.530 0.312 0.582 0.209 0.655 0.066 0.248 0.257 3.972 2.293 0.602 0.277 0.176 0.273 0.459 0.539 0.106 0.180 0.155 0.008 0.309 0.138 0.052 0.469 0.061 0.091 0.057 0.308 0.155 0.227 0.084 0.123 0.462 0.443 0.248 0.261 0.361 0.031 0.104 0.175 0.022 0.015 828 chr17 35847098 35855771 + 0 NA intron (NM_007026, intron 1 of 2) intron (NM_007026, intron 1 of 2) 1483 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 9.496 3.053 1.928 1.136 4.305 5.081 3.129 2.507 1.991 1.557 2.370 1.665 2.003 3.312 2.373 3.086 1.819 1.211 0.285 0.736 1.907 1.903 1.757 4.755 5.024 2.012 0.989 2.146 2.456 3.232 1.645 1.748 1.072 11.080 3.495 1.113 3.933 3.369 2.355 1.485 3.889 2.162 1613 chr6 1603783 1616025 + 0 NA promoter-TSS (NM_001453) promoter-TSS (NM_001453) -777 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 2.585 0.355 0.360 0.248 1.367 0.077 0.861 0.276 5.796 4.406 6.192 0.965 0.222 0.348 2.424 1.102 0.616 0.978 0.288 0.363 1.038 1.008 1.474 2.819 1.630 1.697 0.948 0.213 0.974 2.095 3.093 1.998 1.005 2.816 0.770 0.670 1.534 7.769 1.590 0.386 0.216 0.126 457 chr12 58118667 58121381 + 0 NA promoter-TSS (NR_027032) promoter-TSS (NR_027032) 1 NR_027032 100130776 Hs.656080 NR_027032 ENSG00000255737 AGAP2-AS1 PUNISHER AGAP2 antisense RNA 1 ncRNA 1.453 3.492 0.160 0.208 1.046 1.439 3.080 0.624 3.926 1.900 0.468 0.596 1.167 1.432 0.565 0.421 1.168 3.716 2.619 1.876 1.834 2.249 2.084 1.215 1.492 0.996 1.476 2.432 5.008 2.960 1.685 1.067 0.636 19.888 0.046 0.760 9.348 1.630 0.196 0.911 0.597 613 chr14 103045414 103060982 + 0 NA Intergenic L1MB8|LINE|L1 -5798 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 1.891 1.595 1.073 0.434 1.249 2.771 2.179 1.186 3.362 2.288 3.052 0.714 0.621 1.199 3.295 1.689 0.964 0.864 0.667 1.861 2.476 2.794 0.739 1.391 1.592 2.500 1.053 1.167 1.652 2.903 3.865 0.779 3.586 1.373 1.542 1.190 1.302 2.517 2.126 3.480 0.766 0.462 1285 chr20 62767691 62801877 + 0 NA Intergenic Intergenic -11043 NM_004535 4661 Hs.279562 NM_004535 ENSG00000196132 MYT1 C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A myelin transcription factor 1 protein-coding 0.103 0.075 0.011 0.145 0.201 0.035 0.101 0.059 8.727 2.023 0.145 0.030 0.014 0.035 0.133 0.052 0.014 0.032 0.468 0.049 0.026 0.034 0.051 0.071 0.214 0.048 0.016 0.058 0.132 0.107 0.036 0.028 0.082 0.119 0.039 0.093 0.096 0.161 0.051 0.033 0.066 0.060 311 chr11 46309917 46323214 + 0 NA intron (NM_052854, intron 1 of 11) intron (NM_052854, intron 1 of 11) 17376 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 0.857 4.182 0.009 1.552 1.312 0.047 0.190 1.467 4.638 2.088 1.018 0.948 1.969 1.043 1.043 5.126 0.130 1.624 0.038 0.094 2.474 2.255 0.361 0.251 1.332 0.557 0.328 0.619 5.821 0.567 0.892 0.564 0.444 0.908 0.349 0.208 0.019 0.619 3.786 4.678 0.113 0.027 705 chr16 11701295 11736995 + 0 NA Intergenic AluJb|SINE|Alu -37823 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 1.392 0.793 1.048 0.799 1.501 1.389 1.235 1.145 4.638 1.622 0.846 0.848 0.086 1.304 1.728 1.923 2.882 0.385 0.070 0.070 1.642 1.218 1.432 2.868 0.545 0.148 0.088 0.758 0.232 1.826 0.115 1.320 2.615 2.191 0.322 0.782 1.569 0.259 1.435 0.935 0.027 0.014 1888 chr8 116421023 116468563 + 0 NA intron (NM_001330599, intron 4 of 5) intron (NM_001330599, intron 4 of 5) 235446 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 0.080 0.210 0.037 0.164 0.298 0.034 0.062 0.022 0.337 0.086 0.082 0.259 0.159 0.105 0.162 0.183 0.646 0.775 0.031 4.078 0.120 0.027 0.020 0.060 0.088 0.046 0.036 0.014 0.671 0.055 0.437 0.015 0.150 0.128 0.033 0.042 0.097 0.047 0.284 0.193 0.013 0.011 1369 chr3 23985847 23989843 + 0 NA intron (NM_001145425, intron 1 of 7) CpG 233 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 2.999 5.458 1.934 0.852 3.236 1.914 6.134 1.299 4.828 2.729 2.043 0.576 1.108 1.157 1.901 2.751 2.447 3.290 1.230 0.970 1.332 1.391 1.945 5.043 2.281 3.588 2.145 1.193 4.589 5.049 3.582 1.949 2.557 8.703 4.087 1.739 1.806 3.226 2.659 1.753 5.354 4.492 1141 chr2 85810668 85823993 + 0 NA intron (NM_006634, intron 1 of 2) intron (NM_006634, intron 1 of 2) -5507 NM_016494 51255 Hs.356187 NM_016494 ENSG00000168894 RNF181 HSPC238 ring finger protein 181 protein-coding 0.779 2.352 0.185 1.087 2.344 0.753 1.205 1.359 10.335 3.677 5.060 0.971 1.829 2.145 1.091 3.513 0.465 3.800 0.383 0.281 1.427 1.215 0.569 0.532 1.596 1.918 0.925 2.141 2.132 1.336 1.144 1.245 1.323 3.209 3.710 0.674 0.853 1.471 1.668 0.942 0.514 0.317 320 chr11 62646949 62652255 + 0 NA intron (NM_001012662, intron 5 of 11) intron (NM_001012662, intron 5 of 11) 431 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 6.658 5.306 4.562 1.002 3.106 3.836 3.620 2.718 11.544 8.195 6.422 2.947 1.952 2.568 6.990 4.909 2.310 3.370 1.549 4.050 2.385 2.770 2.458 4.706 7.671 6.430 3.024 3.963 8.661 5.789 5.468 3.256 3.281 4.385 3.334 2.556 2.056 3.693 3.153 3.286 4.259 3.043 346 chr11 66843156 66849866 + 0 NA Intergenic AluSx1|SINE|Alu 22222 NM_014578 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 0.343 0.646 0.119 0.959 1.415 0.131 0.741 2.076 3.338 1.187 0.509 3.233 0.035 2.037 2.364 2.556 2.221 0.759 0.148 0.076 1.213 1.061 0.187 0.671 0.823 0.107 0.140 2.464 0.304 1.562 0.272 0.223 2.476 2.092 0.194 1.805 4.295 0.699 0.886 0.058 0.034 0.019 1561 chr5 72659382 72671966 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 78678 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 0.730 0.472 0.034 0.752 1.322 0.446 2.571 5.055 4.447 1.926 1.196 1.403 1.624 1.381 0.957 4.314 0.069 1.213 0.024 0.022 3.093 1.896 0.351 0.504 3.076 2.961 1.364 0.492 3.461 0.189 2.762 0.063 0.100 1.356 4.550 0.985 0.046 1.942 1.472 1.552 5.495 4.805 1745 chr7 26191016 26209314 + 0 NA intron (NM_004289, intron 1 of 3) MLT2C1|LTR|ERVL 8318 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 4.042 2.098 0.611 0.313 0.439 0.601 1.797 1.434 1.590 0.539 0.571 0.319 1.508 0.982 4.571 0.934 0.146 1.534 0.114 0.155 0.711 0.320 0.546 0.263 5.322 2.007 0.806 0.981 2.352 0.681 1.783 0.151 0.281 0.297 2.523 0.247 0.265 1.845 1.571 1.300 4.759 4.476 1685 chr6 45614221 45628128 + 0 NA Intergenic L2a|LINE|L2 230860 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.125 2.240 0.040 0.913 0.809 0.491 0.229 1.818 0.534 0.097 0.189 2.157 1.275 0.431 0.639 4.615 0.185 2.404 0.044 0.010 1.091 0.531 0.016 0.085 1.624 1.815 1.165 0.448 7.812 0.070 0.824 0.647 0.273 0.846 0.220 0.290 0.116 0.313 1.690 3.336 5.400 6.014 872 chr17 46011942 46036165 + 0 NA exon (NM_018129, exon 7 of 7) exon (NM_018129, exon 7 of 7) 5164 NM_018129 55163 Hs.631742 NM_018129 ENSG00000108439 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 2.746 0.901 0.857 0.932 1.102 0.440 0.689 0.901 nan 0.677 1.026 0.571 0.603 1.646 2.618 3.074 0.229 0.891 0.508 0.171 0.758 0.607 0.418 0.478 0.544 0.882 0.612 0.473 1.316 1.059 1.455 2.209 1.320 1.681 1.014 0.874 2.130 0.782 0.872 0.482 0.781 0.848 732 chr16 51668248 51675661 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -124476 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 0.077 0.168 0.025 0.043 0.127 0.092 0.112 0.035 0.047 0.039 0.127 0.129 0.058 0.038 0.114 0.054 0.019 0.037 0.029 0.020 0.174 4.162 0.024 0.016 0.063 0.070 0.822 0.039 5.936 1.162 0.048 0.050 0.132 0.078 0.647 0.309 0.382 0.023 607 chr14 95064440 95070245 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -11372 NM_001085 12 Hs.534293 NM_001085 ENSG00000196136 SERPINA3 AACT|ACT|GIG24|GIG25 serpin family A member 3 protein-coding 6.447 0.136 0.011 0.270 0.461 0.657 4.264 1.123 5.519 3.099 1.024 0.417 3.505 3.240 0.117 4.137 1.524 0.596 0.051 0.047 5.465 6.846 0.998 1.880 0.801 0.550 1.668 5.689 3.002 3.707 1.302 5.049 0.074 2.694 2.459 0.442 0.190 5.943 8.362 2.847 2.373 234 chr10 21803462 21825260 + 0 NA intron (NM_207371, intron 1 of 3) intron (NM_207371, intron 1 of 3) 250 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 1.265 5.771 0.747 0.541 1.584 5.217 1.915 0.551 1.651 0.921 1.221 0.530 2.385 0.861 1.587 1.944 0.818 1.911 0.564 3.820 1.818 2.021 1.940 6.462 1.164 2.769 1.240 0.895 2.770 3.881 1.967 2.274 3.085 2.069 4.049 1.567 1.288 4.779 3.309 0.664 2.875 2.260 68 chr1 55928844 55947068 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 246642 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.086 0.149 0.027 0.463 0.277 0.139 0.101 0.383 nan 0.089 0.198 0.386 0.188 1.696 0.321 3.916 0.037 0.309 0.038 0.873 0.354 0.048 0.118 0.465 0.073 0.077 0.250 0.253 0.871 0.097 0.725 0.944 0.121 0.688 0.395 0.315 0.182 0.455 0.205 0.019 0.020 1628 chr6 17719958 17723922 + 0 NA Intergenic Intergenic 14666 NR_134618 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 0.127 0.194 10.064 0.048 0.167 0.042 0.086 0.026 0.142 0.129 0.538 0.122 0.032 2.359 0.282 0.215 0.117 0.084 0.104 0.093 0.073 0.064 0.152 0.061 0.073 0.051 0.082 0.213 0.020 0.016 0.465 0.023 0.031 1.037 0.143 0.079 0.015 0.039 1332 chr22 31737863 31744823 + 0 NA exon (NM_032050, exon 1 of 4) exon (NM_032050, exon 1 of 4) 906 NM_032052 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding 7.785 2.327 1.619 1.239 4.251 2.806 7.032 1.714 nan 6.754 8.081 2.251 0.782 2.008 6.694 2.448 1.264 1.029 1.266 1.991 0.972 0.920 1.343 2.077 4.092 2.456 1.087 3.126 2.174 3.018 2.813 2.248 5.213 3.665 2.180 2.865 4.474 4.434 3.318 1.748 1.109 0.807 814 chr17 27502138 27508973 + 0 NA intron (NM_001346765, intron 1 of 42) intron (NM_001346765, intron 1 of 42) -1785 NM_001346767 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 5.125 3.766 0.292 2.250 7.088 0.773 3.315 1.384 15.038 9.405 7.883 1.922 0.724 2.879 5.942 4.259 1.971 0.839 2.898 0.242 3.051 3.634 1.824 1.243 4.038 1.707 1.278 2.599 2.056 9.237 2.166 5.120 4.721 4.827 4.469 3.023 3.375 3.220 4.258 0.586 0.480 0.278 452 chr12 57075823 57085010 + 0 NA intron (NM_006601, intron 1 of 7) AluSp|SINE|Alu 1365 NR_104219 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 6.689 3.647 4.172 1.156 4.269 3.981 5.314 1.744 5.929 3.652 3.252 2.052 2.131 2.506 4.193 2.938 2.063 1.857 1.799 1.448 3.465 3.689 1.727 5.988 5.606 5.341 2.135 2.032 7.343 5.618 5.365 2.942 4.060 4.241 5.203 2.432 2.477 6.727 4.778 2.263 2.875 2.032 939 chr18 3440825 3467311 + 0 NA intron (NM_173211, intron 1 of 2) intron (NM_173211, intron 1 of 2) 296 NM_173211 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 3.615 3.965 1.829 1.330 3.232 4.570 4.162 1.183 4.977 4.013 3.744 1.634 1.179 1.773 3.430 1.643 2.209 1.664 4.046 2.564 1.492 1.914 1.365 2.818 6.748 2.588 1.201 1.749 5.056 4.000 3.828 3.599 4.579 3.955 2.210 1.963 5.244 7.226 2.297 1.811 1.748 1.360 1928 chr9 14309600 14327315 + 0 NA intron (NM_001190738, intron 1 of 8) intron (NM_001190738, intron 1 of 8) -4412 NM_005596 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 2.645 2.268 1.738 0.401 1.908 3.383 2.734 0.313 5.362 3.216 7.029 0.996 0.541 2.962 2.094 2.307 1.574 2.576 0.913 2.293 0.838 1.019 0.113 5.637 1.774 2.307 0.924 1.575 1.566 4.286 2.643 3.786 2.118 2.587 6.615 1.022 1.372 2.097 1.614 1.927 1.718 1.035 1416 chr3 160115866 160122851 + 0 NA intron (NM_001288753, intron 2 of 23) intron (NM_001288753, intron 2 of 23) 1011 NM_005496 10051 Hs.58992 NM_005496 ENSG00000113810 SMC4 CAP-C|CAPC|SMC-4|SMC4L1 structural maintenance of chromosomes 4 protein-coding 10.953 3.021 4.503 1.090 3.637 3.444 7.736 2.503 6.298 3.249 7.497 1.760 2.533 3.337 3.937 5.695 2.900 2.243 1.791 1.515 4.103 5.188 1.836 3.094 7.969 4.549 2.023 2.040 4.854 2.925 4.258 2.020 4.338 3.803 5.355 1.524 1.329 5.086 4.172 4.422 2.506 1.912 1056 chr19 45941184 45960584 + 0 NA Intergenic (TCTCTG)n|Simple_repeat|Simple_repeat 10972 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 3.685 1.095 0.490 0.558 1.309 1.704 1.349 0.485 nan 1.599 2.048 0.609 0.316 0.747 2.316 1.194 0.915 2.918 0.658 0.959 0.499 0.418 0.465 0.830 0.945 1.031 0.535 0.496 1.335 2.425 5.102 0.544 0.942 5.317 0.528 0.688 1.979 2.414 0.192 0.513 1.514 0.846 1901 chr8 128793191 128989254 + 0 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 69747 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 1.432 1.700 0.338 0.708 1.650 2.781 1.131 0.928 4.967 2.361 0.783 1.001 1.678 0.868 1.256 3.094 1.063 38.970 0.142 0.167 1.605 1.209 1.064 9.256 3.740 2.912 1.185 1.191 2.376 2.230 2.810 7.013 2.164 2.434 9.333 0.436 1.335 5.960 12.828 0.895 1.743 1.273 482 chr12 96610455 96615106 + 0 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 24620 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 5.982 1.478 0.950 1.791 3.472 0.163 5.760 4.485 7.923 4.247 3.642 2.852 2.842 4.225 3.235 6.503 1.911 2.342 0.021 0.119 5.114 5.839 1.451 0.418 6.697 2.987 1.273 6.051 8.966 3.833 3.368 0.034 0.897 5.736 9.167 1.892 0.606 2.514 2.357 1.721 6.530 7.439 1118 chr2 28645014 28677707 + 0 NA Intergenic Intergenic -43821 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 0.247 0.669 0.042 0.881 0.917 0.265 0.742 0.525 4.602 0.959 0.947 0.671 0.394 0.700 1.270 1.607 0.644 0.624 0.039 0.025 0.585 0.305 0.100 0.234 0.792 0.122 0.065 1.310 1.007 0.589 0.307 0.314 1.040 0.746 0.485 0.879 1.380 0.302 0.474 0.492 0.107 0.107 1303 chr21 40167685 40193129 + 0 NA intron (NM_005239, intron 1 of 9) intron (NM_005239, intron 1 of 9) 2652 NM_005239 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 3.707 0.990 1.095 0.940 1.404 0.119 1.292 0.896 3.618 1.556 1.921 1.366 0.458 1.131 1.443 1.622 0.868 0.793 1.112 0.104 1.341 1.087 0.469 0.219 1.281 0.720 0.426 0.874 0.928 1.659 0.405 2.942 3.907 2.201 1.709 2.115 3.949 0.449 1.247 0.663 0.336 0.266 375 chr11 104836266 104841403 + 0 NA intron (NM_001225, intron 1 of 8) intron (NM_001225, intron 1 of 8) 491 NM_001225 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 1.629 2.503 4.782 0.814 2.506 0.332 3.166 2.095 2.406 1.772 2.466 1.129 1.014 5.866 5.208 2.447 3.539 2.980 0.139 3.865 3.426 0.847 2.822 6.617 3.812 1.717 2.048 4.688 0.430 1.663 2.539 3.701 1.067 0.395 2.714 2.122 0.150 2.533 1.510 0.168 0.090 1451 chr3 187660356 187674373 + 0 NA Intergenic Intergenic 26831 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 0.179 0.151 0.038 0.188 0.234 0.189 0.271 0.192 3.004 0.494 0.308 0.316 0.017 0.242 4.482 0.233 0.098 0.376 0.078 0.010 3.587 2.053 0.058 0.619 0.143 0.068 0.028 0.126 0.261 1.040 0.088 0.511 2.048 0.197 0.060 0.599 0.257 0.038 0.118 0.081 0.016 0.007 305 chr11 19092795 19113577 + 0 NA Intergenic Intergenic -20958 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 0.940 0.135 0.301 0.913 1.085 0.027 0.224 2.204 2.930 0.449 1.273 0.091 0.427 1.934 1.841 1.083 0.239 0.278 0.086 0.020 0.558 0.226 0.049 0.057 0.364 0.084 0.067 0.114 0.149 0.098 0.023 0.100 0.649 1.099 0.044 0.696 0.521 0.056 0.354 0.297 0.017 0.015 1257 chr20 48752962 48771260 + 0 NA intron (NM_001162505, intron 1 of 5) AluSq2|SINE|Alu 8224 NM_001162505 387521 Hs.744839 NM_199129 ENSG00000240849 TMEM189 KUA transmembrane protein 189 protein-coding 4.790 1.785 1.046 0.873 2.036 1.766 1.352 0.810 2.887 1.166 2.181 1.263 0.453 0.720 1.505 1.025 1.618 0.961 0.438 0.643 0.912 0.646 0.600 1.589 2.472 0.718 0.387 0.746 1.727 1.802 1.376 0.668 1.322 2.291 0.820 1.585 1.096 2.341 0.846 1.745 0.359 0.218 764 chr16 86853325 86870621 + 0 NA Intergenic Intergenic 106276 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LOC102724344 - uncharacterized LOC102724344 ncRNA 0.113 0.195 0.022 0.085 1.252 0.096 0.006 0.698 0.437 0.098 0.034 0.614 0.239 0.247 1.303 0.016 4.463 0.046 0.016 0.265 0.068 0.013 0.831 1.869 0.289 0.178 0.160 1.017 0.108 0.123 2.685 0.213 0.084 3.832 0.398 0.208 0.062 0.352 1.856 0.013 0.017 242 chr10 34810615 34818941 + 0 NA intron (NM_001184785, intron 2 of 24) AluSc|SINE|Alu 289475 NM_001184794 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.475 1.691 0.081 0.269 1.013 5.797 1.414 0.698 0.634 0.155 0.275 0.474 1.672 0.645 0.345 1.458 1.466 3.340 0.035 0.074 1.840 1.206 1.649 3.421 1.346 0.613 0.398 0.985 4.015 3.292 0.464 0.381 0.969 1.757 26.132 0.589 0.247 0.676 1.988 1.131 2.507 1.158 1998 chrX 24166551 24169778 + 0 NA promoter-TSS (NR_046657) intron (NM_001178085, intron 1 of 10) 310 NM_003410 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein, X-linked protein-coding 2.882 6.361 3.842 1.228 7.011 5.743 5.611 1.614 3.943 2.479 4.668 1.126 0.618 1.377 4.890 1.852 2.346 5.579 1.354 5.786 3.396 5.936 4.199 9.229 17.524 9.718 3.900 3.641 3.484 8.775 7.747 3.064 5.243 10.349 2.795 2.489 3.348 4.690 4.779 2.174 4.212 2.595 1361 chr3 11176577 11198206 + 0 NA intron (NM_001098213, intron 1 of 1) L1ME3|LINE|L1 8612 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 0.293 0.535 0.014 0.593 1.361 0.215 1.754 1.643 2.210 0.627 0.296 1.002 0.408 1.568 0.694 2.489 0.168 0.659 0.028 0.006 0.992 0.710 0.062 0.054 0.862 1.208 0.571 1.818 1.300 0.839 1.338 0.015 0.492 1.051 3.982 0.374 0.127 1.304 1.112 0.845 0.881 0.684 532 chr13 74165533 74198273 + 0 NA Intergenic Intergenic 43522 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.293 0.105 0.029 0.059 0.127 0.027 0.097 0.107 7.177 2.183 0.674 0.188 0.057 0.383 0.206 0.196 0.044 0.083 0.059 0.019 0.253 0.113 0.023 0.067 0.189 0.031 0.026 0.117 0.162 0.463 0.035 0.173 0.687 0.061 0.110 0.414 0.573 0.027 0.080 0.063 0.004 0.008 119 chr1 151022128 151035566 + 0 NA intron (NM_020239, intron 1 of 4) intron (NM_020239, intron 1 of 4) 3278 NM_001038707 56882 Hs.22065 NM_020239 ENSG00000197622 CDC42SE1 SCIP1|SPEC1 CDC42 small effector 1 protein-coding 1.828 3.494 0.803 0.477 1.804 3.808 1.228 0.720 19.148 12.604 1.674 1.131 0.793 1.185 1.196 2.152 1.160 2.973 1.100 1.252 2.052 1.951 1.198 6.937 1.618 2.082 1.066 0.754 1.013 2.567 1.636 3.264 3.681 1.536 0.868 1.137 1.613 3.282 0.975 0.983 1.084 0.519 1778 chr7 74264029 74268799 + 0 NA intron (NM_001281447, intron 1 of 2) intron (NM_001281447, intron 1 of 2) 1458 NM_001281447 84163 Hs.647017 NM_173537 ENSG00000196275 GTF2IRD2 FP630|GTF2IRD2 alpha|GTF2IRD2A GTF2I repeat domain containing 2 protein-coding 2.776 5.613 2.816 0.954 3.263 4.312 7.653 1.091 7.772 5.032 6.682 1.003 1.712 1.658 2.796 4.305 2.697 5.174 3.459 3.634 6.884 10.516 3.911 9.458 6.553 3.212 1.618 3.879 4.052 5.123 7.589 2.704 3.607 6.436 8.198 3.071 3.945 3.437 4.157 3.503 2.330 1.593 1161 chr2 114081509 114094917 + 0 NA Intergenic Intergenic -51715 NM_013953 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 0.736 2.303 0.018 0.821 1.358 0.308 4.155 1.287 4.171 1.783 1.874 2.182 1.012 2.168 0.842 3.317 0.430 0.380 0.023 0.177 4.325 4.108 0.257 0.756 1.380 0.233 0.204 1.153 1.609 1.673 0.396 0.495 1.125 1.089 0.812 0.338 0.067 0.917 1.857 2.843 0.369 0.267 467 chr12 65949012 65964901 + 0 NA intron (NR_120434, intron 4 of 4) intron (NR_120434, intron 4 of 4) -5865 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 0.483 1.585 0.121 0.228 0.179 0.204 0.275 1.261 0.993 0.265 1.784 1.363 1.450 0.372 0.091 1.814 0.018 6.950 0.038 0.221 0.096 0.028 0.009 0.572 0.334 0.208 0.122 0.145 0.729 0.128 0.680 0.040 0.087 0.107 0.565 0.107 0.091 0.267 0.278 1.238 0.098 0.077 1171 chr2 173108220 173120340 + 0 NA Intergenic MER57D|LTR|ERV1 146546 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 1.501 0.614 0.031 3.053 3.618 1.108 2.448 2.307 2.240 0.477 0.598 4.193 4.295 1.941 2.188 6.237 0.714 1.521 0.611 0.046 2.331 1.389 0.084 0.422 10.232 9.970 3.690 3.064 3.085 0.188 4.073 0.347 0.622 2.358 1.518 0.555 0.534 2.677 2.520 4.302 0.931 0.977 360 chr11 72966011 72986881 + 0 NA 5' UTR (NM_001277206, exon 1 of 3) 5' UTR (NM_001277206, exon 1 of 3) 165 NM_001277206 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 0.167 0.227 0.088 1.399 3.048 0.767 0.154 1.411 nan 1.366 2.682 0.555 0.754 3.818 3.620 2.946 0.445 0.455 0.081 0.027 1.407 1.071 0.289 0.333 3.748 1.165 0.552 0.858 1.712 1.364 0.406 1.878 1.961 2.247 2.705 0.200 3.390 0.920 1.389 0.172 1.109 1.074 324 chr11 63604569 63617438 + 0 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) 4603 NM_001163296 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 1.431 1.425 1.203 0.753 2.020 0.978 1.073 0.953 8.931 3.671 3.272 0.745 0.455 1.100 2.618 2.157 0.997 0.585 0.848 0.375 1.178 0.959 1.088 1.054 1.567 1.111 0.492 1.191 0.763 2.167 1.313 0.547 2.449 2.140 0.917 0.427 2.134 1.256 0.621 0.647 0.224 0.155 878 chr17 48217460 48239577 + 0 NA promoter-TSS (NM_032595) promoter-TSS (NM_032595) -640 NM_032595 84687 Hs.514323 NM_032595 ENSG00000108819 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1 regulatory subunit 9B protein-coding 1.877 3.631 0.326 0.627 1.332 2.465 0.819 0.510 nan 2.102 1.223 0.773 0.827 1.169 1.879 2.386 1.366 1.346 0.594 1.620 0.987 0.929 1.432 2.184 3.624 2.614 1.269 0.347 1.939 2.871 3.515 1.307 2.293 1.450 1.342 0.674 2.036 5.016 1.033 1.582 0.908 0.433 2003 chrX 48896049 48901073 + 0 NA intron (NM_006521, intron 1 of 9) AluSc|SINE|Alu 2482 NM_001282142 7030 Hs.730740 NM_006521 ENSG00000068323 TFE3 RCCP2|RCCX1|TFEA|bHLHe33 transcription factor binding to IGHM enhancer 3 protein-coding 1.261 4.851 0.971 0.793 2.590 2.393 2.981 1.702 2.289 1.616 3.312 1.929 1.310 2.442 2.154 2.487 0.915 3.315 0.355 1.119 3.272 4.999 2.100 9.003 15.523 9.463 3.747 2.055 4.495 5.181 3.736 1.249 3.485 3.001 1.768 1.791 0.988 2.707 3.396 2.310 3.496 2.469 1599 chr5 158122108 158133130 + 0 NA intron (NM_182708, intron 14 of 14) intron (NM_182708, intron 14 of 14) -290838 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LOC101927697 - uncharacterized LOC101927697 ncRNA 0.066 0.194 0.006 0.086 0.262 0.066 0.010 0.093 0.091 0.110 0.040 0.192 0.010 0.017 0.064 0.052 1.024 0.018 0.434 0.321 0.028 0.371 0.134 0.044 0.021 0.031 13.731 0.479 0.019 0.157 0.055 0.067 0.016 0.015 0.122 0.014 0.212 0.052 0.037 969 chr19 1393928 1417160 + 0 NA Intergenic AluJb|SINE|Alu -2024 NM_018959 26528 Hs.222510 NM_018959 ENSG00000071626 DAZAP1 - DAZ associated protein 1 protein-coding 1.206 1.297 0.872 0.384 1.718 0.951 1.576 0.408 3.167 1.614 2.093 0.434 0.289 1.329 0.954 1.041 0.255 0.552 0.385 0.734 0.709 0.798 1.133 1.120 1.790 1.452 0.741 0.566 1.344 1.255 2.036 0.987 1.003 2.249 1.092 0.541 1.739 4.283 1.193 0.662 0.731 0.429 1482 chr4 77505162 77513146 + 0 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 12450 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 5.337 1.443 6.146 0.405 1.800 0.269 3.571 2.335 3.267 1.914 3.397 2.170 1.080 2.494 0.411 3.039 1.861 0.217 0.111 1.703 1.041 2.316 0.074 0.446 1.210 0.648 1.839 3.639 0.528 0.307 0.138 0.591 2.851 0.671 0.445 2.326 0.269 1.663 0.629 0.837 0.491 804 chr17 17578242 17647697 + 0 NA intron (NM_030665, intron 1 of 5) intron (NM_030665, intron 1 of 5) 28182 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 1.245 1.126 0.368 0.879 2.380 1.185 0.969 0.250 6.701 2.979 3.449 1.417 0.491 1.063 1.976 1.667 1.583 0.830 0.989 0.512 0.711 0.779 0.554 1.241 2.021 1.167 0.554 2.432 0.436 3.759 1.997 0.533 1.113 2.477 2.384 1.039 1.152 1.560 1.690 0.857 0.520 0.329 1356 chr22 50707456 50755518 + 0 NA intron (NM_012401, intron 2 of 36) intron (NM_012401, intron 2 of 36) 14514 NM_012401 23654 Hs.3989 NM_012401 ENSG00000196576 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 3.462 2.174 1.074 0.844 2.334 0.826 3.706 1.050 8.527 5.281 6.427 1.259 0.592 1.377 2.717 1.334 1.409 0.332 0.647 0.273 0.804 0.887 0.809 0.718 2.235 1.072 0.442 1.166 0.506 1.890 1.125 0.602 1.361 2.036 0.518 0.961 2.910 1.453 0.577 0.930 0.453 0.290 464 chr12 58326870 58338999 + 0 NA Intergenic L1PB4|LINE|L1 -2353 NM_001320409 91419 Hs.61188 NM_033276 ENSG00000166896 ATP23 KUB3|XRCC6BP1 ATP23 metallopeptidase and ATP synthase assembly factor homolog protein-coding 1.237 0.944 0.328 0.390 0.826 0.862 1.055 0.380 1.833 0.929 0.893 0.638 0.565 0.441 0.875 0.441 0.284 1.599 0.437 0.547 0.827 0.620 0.565 0.730 1.130 0.717 0.371 0.223 1.047 1.121 1.899 0.689 0.822 0.841 13.492 0.544 0.557 1.600 0.950 0.497 0.855 0.468 1560 chr5 72604734 72625265 + 0 NA Intergenic L2|LINE|L2 -117211 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 0.346 0.496 0.043 0.966 1.381 0.031 1.017 2.984 6.892 2.144 0.809 1.311 0.514 1.135 0.450 3.755 0.070 1.290 0.029 0.014 4.342 3.007 0.054 0.111 2.106 0.583 0.452 0.287 3.240 0.103 0.849 0.046 0.068 1.855 0.560 1.171 0.056 0.198 0.624 1.596 3.363 3.305 850 chr17 39966485 39970775 + 0 NA promoter-TSS (NM_006455) promoter-TSS (NM_006455) -179 NM_006455 10609 Hs.446459 NM_006455 ENSG00000141696 P3H4 LEPREL4|NO55|NOL55|SC65 prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding 2.243 7.385 0.331 0.616 1.940 11.144 4.848 2.049 3.400 2.560 2.065 2.335 1.840 3.774 4.230 4.095 1.136 3.205 2.131 5.492 0.671 0.520 4.704 7.905 1.223 0.544 0.544 1.935 1.001 8.373 5.503 5.595 4.851 1.551 5.169 0.913 1.337 11.435 2.774 1.175 3.221 1.540 573 chr14 50357351 50366879 + 0 NA 3' UTR (NM_001663, exon 2 of 2) 3' UTR (NM_001663, exon 2 of 2) 2379 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 6.397 2.295 4.123 1.074 4.596 3.969 7.043 1.816 5.705 4.430 5.809 2.854 2.484 2.107 4.610 2.017 1.945 2.540 0.826 1.282 5.245 6.664 0.823 2.518 2.792 3.332 1.484 2.559 5.160 2.811 2.341 1.878 3.147 5.144 6.922 1.758 1.851 3.636 3.115 4.114 2.152 2.119 1822 chr7 148928429 148938000 + 0 NA Intergenic AluSz|SINE|Alu -3528 NM_012256 7988 Hs.490510 NM_012256 ENSG00000170260 ZNF212 C2H2-150|ZNF182|ZNFC150 zinc finger protein 212 protein-coding 3.826 1.367 0.176 2.235 4.450 0.219 8.834 4.049 2.365 1.255 4.170 1.921 1.299 3.300 3.452 3.396 0.639 0.650 0.105 0.274 1.026 0.888 0.401 0.319 1.561 0.654 0.480 5.659 1.094 0.904 4.029 0.229 1.662 5.156 0.800 0.737 1.921 1.445 1.756 0.537 1.077 0.774 1689 chr6 51352851 51362558 + 0 NA Intergenic MIR|SINE|MIR -128964 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.060 0.064 0.025 0.117 0.228 0.019 0.105 0.011 4.035 0.670 1.226 0.090 0.012 0.191 0.070 0.125 0.010 0.067 4.510 0.013 0.007 0.055 0.223 0.031 0.048 0.099 0.025 0.068 0.048 0.610 0.199 0.019 0.693 0.018 0.025 0.024 0.012 0.011 1655 chr6 31544323 31551018 + 0 NA TTS (NM_009588) TTS (NM_009588) 2532 NM_009588 4050 Hs.376208 NM_002341 ENSG00000227507 LTB TNFC|TNFSF3|TNLG1C|p33 lymphotoxin beta protein-coding 0.268 0.945 0.900 0.934 1.407 3.039 0.173 1.249 1.043 0.432 0.244 0.087 0.317 1.861 0.215 0.858 0.091 0.385 0.249 0.147 0.370 0.194 0.262 0.229 6.460 6.795 2.741 0.057 0.428 0.849 2.459 0.590 0.419 0.160 0.621 0.092 0.531 5.317 0.295 0.175 0.103 0.038 911 chr17 76835168 76838581 + 0 NA promoter-TSS (NM_001321291) promoter-TSS (NM_001321291) -265 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 6.134 5.606 0.798 1.827 4.987 9.469 5.941 1.180 12.435 11.132 5.383 3.164 2.126 4.328 2.504 4.289 1.029 2.416 3.134 2.033 3.184 3.824 4.054 5.165 5.398 2.957 1.667 1.948 4.818 6.392 5.788 5.576 6.839 14.070 2.676 3.854 4.213 9.678 2.596 2.012 1.636 1.342 631 chr15 50644823 50649675 + 0 NA promoter-TSS (NR_026891) promoter-TSS (NR_026891) -173 NR_026891 55056 Hs.511316 NM_017976 ENSG00000104064 FLJ10038 - uncharacterized protein FLJ10038 ncRNA 6.334 7.412 2.530 1.990 4.753 7.929 5.073 2.420 10.340 8.746 4.958 3.300 2.013 4.085 4.814 6.377 2.719 4.875 3.019 4.309 3.511 6.079 3.479 7.805 6.913 5.875 2.149 3.043 9.150 8.401 7.015 2.998 5.127 6.559 8.691 5.655 6.693 5.417 4.889 6.614 3.905 3.213 617 chr14 103797493 103803215 + 0 NA promoter-TSS (NM_001969) promoter-TSS (NM_001969) 15 NM_001969 1983 Hs.433702 NM_001969 ENSG00000100664 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 4.600 3.918 4.181 0.233 1.945 7.637 4.716 2.088 8.838 7.482 6.899 2.225 1.708 2.137 12.889 2.366 2.015 2.689 2.367 4.993 5.205 7.129 1.508 8.563 4.038 5.463 2.965 3.371 4.566 6.217 11.004 1.930 7.216 3.058 4.951 2.868 3.698 4.884 3.809 6.133 2.134 1.711 1040 chr19 42612634 42627870 + 0 NA intron (NM_001207025, intron 5 of 13) MLT1C|LTR|ERVL-MaLR 16373 NM_001207026 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 0.577 2.936 0.008 1.412 1.499 0.862 0.220 1.009 nan 0.155 0.183 0.403 1.836 1.995 0.255 1.140 0.088 0.342 0.053 0.027 0.811 0.496 0.461 0.142 10.958 6.929 2.396 0.096 5.786 0.549 4.345 0.201 0.105 0.329 0.326 0.032 0.173 1.507 0.265 1.629 1.134 1.097 319 chr11 62491714 62498548 + 0 NA promoter-TSS (NM_001318814) promoter-TSS (NM_001318814) -274 NM_001079559 221092 Hs.657058 NM_001079559 ENSG00000214753 HNRNPUL2 HNRPUL2|SAF-A2 heterogeneous nuclear ribonucleoprotein U like 2 protein-coding 4.397 5.668 2.333 1.464 4.440 4.069 3.789 1.710 7.623 5.287 4.265 2.992 1.764 1.853 8.178 5.058 2.374 3.191 2.962 2.514 2.932 3.305 2.978 3.725 7.858 6.588 3.575 2.456 6.683 4.991 5.449 2.575 2.873 3.569 3.622 1.696 2.616 4.464 3.898 4.882 3.101 1.855 946 chr18 20512589 20515824 + 0 NA TTS (NR_039895) TTS (NR_039895) 367 NM_203291 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 3.034 3.094 0.570 1.352 2.897 3.731 1.151 1.077 4.675 2.576 2.404 0.994 1.019 2.328 1.847 1.404 1.148 4.499 2.905 2.405 1.128 1.131 1.879 2.286 3.798 14.507 8.158 0.424 1.880 2.491 3.136 3.468 1.997 3.602 3.329 0.749 2.026 2.945 1.783 1.344 0.926 0.460 1327 chr22 23520715 23548172 + 0 NA intron (NM_021574, intron 1 of 21) intron (NM_021574, intron 1 of 21) 11891 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR, RhoGEF and GTPase activating protein protein-coding 1.041 0.356 0.372 0.817 1.743 0.117 2.290 0.579 nan 1.722 1.077 0.419 0.116 0.545 0.595 1.251 0.160 0.222 0.284 0.085 0.667 0.510 0.800 0.354 0.729 0.250 0.213 0.298 0.193 0.397 0.602 0.224 0.495 1.942 0.345 0.290 0.211 0.436 0.299 0.157 0.067 0.037 1523 chr5 17212979 17225934 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 1786 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 0.189 1.123 0.653 0.834 3.106 4.195 0.298 0.546 3.939 1.580 1.944 0.544 0.674 0.295 0.044 1.888 0.736 0.641 0.054 0.450 1.133 0.993 1.014 2.132 0.135 0.312 0.204 0.528 1.293 2.435 0.832 0.316 0.389 1.182 0.035 0.813 3.046 3.258 1.397 0.146 0.040 0.016 1551 chr5 56728559 56739322 + 0 NA Intergenic Intergenic 44696 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 1.860 0.079 0.104 0.334 0.422 0.082 1.006 3.300 0.505 0.113 0.614 0.888 0.593 2.840 1.841 2.121 0.035 4.549 0.027 0.013 1.461 0.660 0.034 0.157 1.146 0.660 0.269 0.229 1.042 0.151 0.307 0.692 0.613 0.126 1.644 0.149 0.085 0.108 1.296 0.869 0.128 0.085 1219 chr20 14962821 14974388 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) -58440 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 0.164 0.169 0.067 0.033 0.082 4.054 0.259 0.163 0.709 0.230 3.325 0.155 0.316 2.229 0.374 0.073 0.124 0.111 0.894 1.772 1.153 0.435 0.136 0.037 0.040 0.971 0.103 2.667 0.006 2.147 2.656 0.074 0.008 2.436 1.433 0.051 0.068 0.106 0.015 0.005 1835 chr8 29256273 29263018 + 0 NA Intergenic Intergenic -51378 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 0.129 0.182 0.168 0.079 0.084 0.030 0.295 0.585 0.072 0.128 0.022 0.018 0.058 0.156 0.014 0.850 0.150 0.017 0.838 0.463 0.045 2.327 0.137 0.117 0.067 0.022 0.133 0.736 0.010 4.129 0.903 0.042 0.027 0.275 0.111 0.180 0.157 0.177 0.009 0.007 673 chr15 96804446 96818101 + 0 NA intron (NR_102743, intron 7 of 7) intron (NR_102743, intron 7 of 7) -57884 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 3.707 0.272 1.286 0.446 0.537 0.507 1.450 2.412 0.515 0.106 0.789 0.654 0.360 1.876 2.636 1.684 0.545 2.207 0.051 0.474 0.195 0.836 0.120 1.481 1.081 0.525 0.956 3.643 0.687 0.418 3.520 1.140 0.226 0.027 0.907 0.659 0.624 0.970 1.331 4.318 4.573 281 chr10 135069689 135078143 + 0 NA Intergenic Intergenic -12527 NR_108078 101927671 Hs.741766 NR_108078 ENSG00000166917 MIR202HG - MIR202 host gene ncRNA 1.517 3.368 0.109 2.860 5.092 5.131 6.108 2.571 7.699 3.075 1.172 1.489 2.590 2.713 0.746 5.330 0.555 2.618 0.342 1.162 2.611 3.598 1.409 2.685 6.310 2.507 1.301 0.597 3.201 2.698 2.986 0.866 5.254 5.876 5.817 3.984 0.736 5.454 2.860 3.555 1.199 1.141 146 chr1 153956522 153966616 + 0 NA Intergenic AluSq2|SINE|Alu -1670 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 1.709 2.302 0.456 0.960 1.918 1.851 1.289 1.344 16.751 13.338 1.586 1.885 2.402 2.146 1.834 2.298 0.758 2.261 1.801 1.207 2.139 1.929 0.843 4.036 4.458 2.571 1.332 0.906 1.792 2.422 2.362 4.493 5.301 1.918 2.796 1.405 2.194 6.597 2.498 1.687 1.250 0.953 591 chr14 68695137 68723818 + 0 NA intron (NM_001321809, intron 7 of 11) MIRb|SINE|MIR 386027 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1.065 1.209 0.561 0.649 0.757 2.445 1.703 1.505 5.039 2.301 6.234 1.585 1.836 1.382 1.634 1.231 0.428 2.851 0.080 0.731 3.618 1.974 0.234 0.548 0.848 0.194 0.146 1.773 1.853 1.283 1.429 0.807 1.051 0.396 2.312 0.230 1.438 1.165 2.199 1.681 0.339 0.462 739 chr16 57306875 57319392 + 0 NA intron (NM_015993, intron 1 of 3) MIRb|SINE|MIR 5451 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 0.243 0.567 0.104 0.366 0.872 7.932 1.427 0.952 2.607 1.215 0.634 0.942 0.603 1.747 0.587 3.177 0.069 0.503 0.104 0.099 1.663 0.819 0.317 0.267 1.677 0.751 0.559 1.179 0.439 0.995 0.720 0.433 1.850 2.241 5.862 0.432 0.196 0.793 0.788 0.954 0.249 0.110 1885 chr8 103664131 103671714 + 0 NA 5' UTR (NM_005655, exon 1 of 4) 5' UTR (NM_005655, exon 1 of 4) 208 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 2.983 7.854 3.117 1.678 5.124 3.273 5.909 2.040 6.055 4.126 4.679 3.144 2.916 2.224 3.790 4.113 3.037 2.640 2.223 1.788 2.234 3.110 2.586 3.364 4.244 6.043 2.516 4.592 4.423 6.007 8.064 1.989 3.262 6.841 4.136 1.098 3.226 5.786 1.230 3.122 2.396 1.318 651 chr15 74212318 74224539 + 0 NA promoter-TSS (NM_005576) promoter-TSS (NM_005576) -371 NM_005576 4016 Hs.65436 NM_005576 ENSG00000129038 LOXL1 LOL|LOXL lysyl oxidase like 1 protein-coding 0.622 0.550 0.071 0.310 0.501 0.170 1.481 0.336 1.359 0.653 0.318 0.396 0.945 0.367 1.765 0.750 0.179 4.179 0.240 0.057 1.699 1.654 0.278 0.458 0.828 0.212 0.077 0.132 15.091 0.253 3.748 0.148 0.900 0.398 0.418 0.380 0.170 1.426 0.407 1.200 1.237 1.046 1911 chr8 144285287 144333735 + 0 NA Intergenic Intergenic 14443 NM_001301772 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 0.305 0.672 0.130 0.157 0.422 0.246 0.330 0.087 2.273 3.633 0.137 0.326 0.085 0.126 0.173 0.380 0.101 0.225 0.072 0.377 0.166 0.172 0.178 0.121 0.338 0.302 0.188 0.101 0.208 0.886 0.527 0.258 0.233 0.840 0.201 0.126 0.165 1.059 0.301 0.086 0.446 0.333 1434 chr3 177051585 177082310 + 0 NA Intergenic Intergenic 54717 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 2.558 2.275 0.317 0.691 1.388 1.943 2.592 1.743 3.579 1.269 4.160 0.941 0.727 1.483 2.334 2.382 0.640 2.977 0.868 1.816 3.231 2.440 0.527 2.965 3.626 1.057 0.686 0.865 2.126 1.340 2.317 0.739 1.896 1.383 3.423 0.852 0.557 2.442 1.511 1.145 0.877 0.939 1789 chr7 98863601 98873623 + 0 NA Intergenic Intergenic -2312 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 4.958 0.449 0.812 0.782 0.013 0.939 2.787 2.071 0.562 0.737 1.971 1.761 2.455 3.068 3.563 0.600 1.509 0.030 0.069 0.495 0.266 0.169 0.162 3.465 1.095 0.736 0.999 11.151 0.876 4.185 0.426 1.339 0.540 1.943 1.124 1.790 0.209 2.744 2.023 2.159 2.752 1216 chr20 4125829 4154627 + 0 NA intron (NM_175842, intron 1 of 8) MIRb|SINE|MIR 10802 NM_175839 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 0.922 3.297 0.015 0.244 0.668 1.073 0.165 0.221 2.670 0.979 0.213 1.043 0.235 0.534 0.580 0.785 0.226 0.979 0.552 0.096 1.028 0.747 0.289 1.658 0.423 0.427 0.246 0.208 0.729 4.766 0.960 0.887 1.970 0.436 0.336 1.216 0.414 0.630 0.615 0.971 0.344 0.199 478 chr12 89695709 89789549 + 0 NA 3' UTR (NM_001946, exon 3 of 3) 3' UTR (NM_001946, exon 3 of 3) 4007 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 0.782 0.804 0.696 0.350 0.881 0.486 1.943 1.077 8.864 5.450 3.381 0.614 1.093 0.581 0.944 1.434 0.124 0.586 1.189 2.587 0.881 0.706 0.374 0.309 0.782 0.884 0.331 0.903 1.481 1.035 0.839 0.704 1.037 0.960 1.321 0.643 0.434 1.115 0.222 0.851 0.338 0.307 441 chr12 51631470 51641857 + 0 NA 3' UTR (NM_001136268, exon 3 of 3) 3' UTR (NM_001136268, exon 3 of 3) 4155 NM_001136267 9802 Hs.369761 NM_014764 ENSG00000183283 DAZAP2 PRTB DAZ associated protein 2 protein-coding 0.891 1.006 1.212 0.561 1.912 1.106 1.799 0.700 2.916 1.849 1.412 0.380 0.695 0.903 1.251 1.088 0.483 0.419 0.522 0.775 0.698 0.871 0.781 0.878 1.022 1.127 0.519 0.641 1.353 1.920 2.316 1.063 1.646 2.525 5.197 0.541 1.511 2.122 1.036 0.571 1.308 1.106 348 chr11 67005585 67021587 + 0 NA exon (NM_012308, exon 15 of 21) exon (NM_012308, exon 15 of 21) 6080 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 1.222 1.346 2.872 0.438 1.113 0.606 0.791 0.764 1.969 1.015 2.315 0.891 0.530 1.185 2.928 1.588 1.572 3.193 0.392 0.259 1.124 1.035 0.524 0.901 3.311 1.440 0.666 0.926 1.481 0.845 1.067 2.296 1.795 1.960 1.562 0.827 3.105 2.476 2.370 0.358 0.374 0.241 1674 chr6 41883866 41890794 + 0 NA intron (NR_131160, intron 1 of 2) intron (NR_131160, intron 1 of 2) 1351 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|TRFP mediator complex subunit 20 protein-coding 3.015 2.470 0.766 0.940 2.227 5.010 2.070 1.583 2.973 2.184 2.257 1.137 1.375 1.679 3.291 7.106 0.774 3.876 0.866 1.186 4.317 4.338 1.739 5.235 3.502 6.908 3.029 1.265 6.979 2.350 3.478 1.304 1.380 4.821 5.327 1.340 1.204 2.876 3.482 1.741 5.727 4.675 505 chr12 124863518 124882642 + 0 NA intron (NM_001077261, intron 18 of 47) intron (NM_001077261, intron 18 of 47) -51292 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 2.584 2.268 0.049 1.240 2.143 3.126 0.654 0.492 7.585 3.568 2.411 1.670 1.789 1.907 2.539 4.592 0.989 1.396 0.294 0.058 0.984 0.934 0.812 3.506 6.083 6.666 2.332 1.306 0.793 4.668 2.828 1.029 2.411 2.513 0.674 0.742 0.718 3.314 0.720 4.081 2.518 1.316 1149 chr2 100491448 100500821 + 0 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 225911 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 0.030 0.066 0.026 0.020 0.056 0.067 0.046 0.022 0.068 0.103 0.068 1.020 0.139 0.154 0.068 0.079 0.043 0.015 0.029 0.008 1.396 0.326 9.527 0.997 0.430 0.067 12.310 0.087 0.038 0.211 0.092 0.038 0.056 0.105 0.158 3.510 0.034 2.495 5.562 6.997 1021 chr19 37802843 37811362 + 0 NA intron (NR_138103, intron 1 of 8) intron (NR_138103, intron 1 of 8) -1682 NR_138111 284459 Hs.657027 NM_181786 ENSG00000181666 HKR1 ZNF875 HKR1, GLI-Kruppel zinc finger family member protein-coding 0.596 1.390 0.884 0.958 2.813 1.029 0.645 0.062 2.366 1.253 0.754 0.806 0.291 0.320 1.165 1.381 0.548 0.833 0.188 0.357 0.928 0.945 0.026 0.285 1.581 2.311 1.359 0.279 1.363 1.003 8.001 0.481 0.226 4.889 1.064 0.171 0.582 0.829 0.806 0.198 1.413 1.061 156 chr1 155094469 155113399 + 0 NA exon (NM_004428, exon 2 of 5) exon (NM_004428, exon 2 of 5) 3585 NM_004428 1942 Hs.516664 NM_004428 ENSG00000169242 EFNA1 B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 ephrin A1 protein-coding 2.774 2.313 1.645 1.543 3.544 9.537 3.881 2.002 7.070 3.988 5.861 2.559 1.414 2.860 2.722 3.095 1.548 1.214 3.307 0.752 2.085 1.822 2.888 5.834 6.475 3.065 1.668 2.232 1.062 3.648 2.434 13.553 9.152 5.982 3.468 2.410 6.311 10.164 3.319 0.896 0.891 0.435 158 chr1 155156817 155166565 + 0 NA intron (NM_001204285, intron 2 of 8) intron (NM_001204285, intron 2 of 8) 1015 NM_001204286 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 1.174 2.458 4.268 1.245 3.936 6.790 6.147 2.074 8.299 2.898 5.475 1.426 1.175 3.803 1.205 2.662 1.509 2.065 12.017 1.877 5.625 9.745 2.367 4.128 4.566 1.686 0.979 1.510 1.626 2.465 2.399 5.138 4.028 5.165 5.334 2.861 1.566 10.060 4.768 1.941 0.709 0.281 124 chr1 151250779 151259995 + 0 NA promoter-TSS (NR_135595) promoter-TSS (NR_135595) 599 NM_001304763 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 2.133 2.712 1.253 1.111 3.152 2.802 2.374 0.765 20.160 15.265 2.164 1.489 1.538 1.692 1.795 2.160 0.913 1.269 2.304 1.665 1.584 1.885 1.744 1.827 3.424 2.102 0.851 0.762 1.070 2.562 3.343 3.699 4.218 4.694 1.701 1.062 2.204 6.138 1.680 0.962 1.194 0.602 501 chr12 122499944 122504577 + 0 NA intron (NR_135044, intron 1 of 3) MLT1K|LTR|ERVL-MaLR 1064 NR_135044 100506691 Hs.536336 NR_135044 ENSG00000256546 LOC100506691 - uncharacterized LOC100506691 ncRNA 0.541 3.281 0.041 1.665 3.135 0.644 1.283 0.810 7.527 2.301 1.557 4.900 1.760 1.180 3.129 3.971 0.124 3.469 3.232 0.030 2.285 1.801 1.713 3.740 0.395 0.534 0.287 2.381 0.777 3.724 2.548 0.836 1.912 2.149 2.038 0.625 1.131 0.539 3.604 1.385 0.044 0.022 1261 chr20 49274434 49298430 + 0 NA intron (NM_001290268, intron 1 of 21) AluSq2|SINE|Alu 21635 NR_110890 140876 Hs.372578 NM_080829 ENSG00000042062 FAM65C C20orf175|C20orf176 family with sequence similarity 65 member C protein-coding 3.539 0.324 0.153 0.283 0.806 0.176 0.555 0.590 2.094 0.839 0.970 0.412 0.110 0.655 3.406 0.623 0.772 0.426 0.078 0.083 0.421 0.244 0.058 0.166 1.291 0.173 0.108 0.615 0.392 1.054 0.137 0.687 0.586 1.332 0.877 0.505 2.816 0.376 0.418 0.067 0.043 0.019 1654 chr6 31525275 31530007 + 0 NA Intergenic Intergenic -12235 NM_001159740 4049 Hs.36 NM_000595 ENSG00000226979 LTA LT|TNFB|TNFSF1|TNLG1E lymphotoxin alpha protein-coding 0.413 3.204 0.040 0.898 1.068 1.143 0.231 2.095 0.155 0.118 0.145 0.217 1.528 0.715 0.061 2.850 0.967 0.022 0.146 0.336 0.197 0.077 0.338 6.303 11.549 4.126 0.120 1.178 0.196 3.438 0.067 0.099 0.347 0.110 0.052 0.070 1.746 1.572 0.483 0.097 0.065 125 chr1 151296392 151302884 + 0 NA intron (NM_001198773, intron 1 of 12) intron (NM_001198773, intron 1 of 12) 553 NM_001198774 5298 Hs.632465 NM_002651 ENSG00000143393 PI4KB NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB phosphatidylinositol 4-kinase beta protein-coding 1.850 2.273 1.178 1.214 2.355 1.931 1.696 1.299 18.029 13.976 1.603 1.305 1.550 2.001 1.788 2.655 0.799 2.030 1.598 1.044 2.087 2.088 1.466 3.025 2.596 2.416 1.022 0.945 1.971 2.270 2.474 6.256 4.704 2.263 2.586 1.642 2.430 3.874 2.443 1.174 1.863 1.133 1590 chr5 145301592 145326184 + 0 NA Intergenic Intergenic -2238 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 0.844 0.742 0.690 0.704 0.845 0.192 0.973 1.378 1.471 0.475 0.938 0.920 2.261 2.577 1.701 3.512 0.660 1.747 0.033 0.096 3.494 2.846 0.799 3.253 1.235 0.347 0.303 0.742 1.934 0.778 1.417 0.285 0.503 1.080 6.681 0.572 0.262 0.402 1.742 1.853 4.679 4.698 973 chr19 1846823 1865963 + 0 NA intron (NM_031918, intron 1 of 1) intron (NM_031918, intron 1 of 1) 7171 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 2.049 2.934 0.408 0.982 3.038 2.419 1.898 0.396 4.806 2.469 1.610 0.704 0.474 1.889 1.238 1.566 0.473 1.105 1.695 1.965 1.371 1.910 2.696 2.105 3.866 2.397 1.042 0.806 2.032 3.629 5.483 1.361 1.379 3.985 2.732 1.262 1.170 7.033 2.590 0.941 2.461 1.412 28 chr1 23871074 23927950 + 0 NA Intergenic Intergenic -13227 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 0.682 2.445 1.518 0.333 0.534 3.709 0.729 0.452 2.604 0.496 0.789 0.550 0.640 0.878 0.992 0.781 1.201 1.795 1.516 0.331 1.615 1.279 2.314 4.015 5.217 0.356 0.236 0.432 0.854 4.459 1.760 2.190 2.633 1.315 1.322 0.825 4.050 5.469 0.852 0.732 0.053 0.033 1305 chr21 40328788 40340104 + 0 NA Intergenic L2a|LINE|L2 15254 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 0.445 0.188 0.057 0.185 0.224 0.045 0.341 0.028 2.420 0.537 1.353 0.272 0.105 0.339 0.297 0.094 0.051 0.215 2.715 0.044 0.914 0.569 0.046 0.083 0.136 0.048 0.006 0.198 0.125 0.440 0.045 3.079 1.466 0.305 0.025 0.442 0.347 0.078 0.376 0.013 0.008 0.004 1139 chr2 74728920 74736210 + 0 NA TTS (NR_024606) TTS (NR_024606) -2122 NM_001009812 85474 Hs.516124 NM_001009812 ENSG00000179528 LBX2 LP3727 ladybird homeobox 2 protein-coding 3.147 3.486 1.062 2.127 4.651 4.883 3.922 1.721 11.493 7.375 2.658 2.760 2.671 2.536 2.328 4.981 1.781 2.741 2.305 3.271 3.997 5.861 2.091 3.490 4.108 7.395 3.114 3.832 8.669 4.229 3.434 6.443 3.026 3.349 6.206 1.811 1.979 5.394 2.674 3.880 5.775 4.577 414 chr12 14404062 14439493 + 0 NA Intergenic AluSq4|SINE|Alu -96789 NM_001286515 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 0.678 0.110 1.072 0.638 1.157 0.756 1.315 1.041 7.450 3.170 2.315 0.880 0.208 0.622 0.480 0.743 0.189 1.106 0.093 1.025 1.212 0.837 0.040 1.046 0.360 0.420 0.224 1.062 1.439 0.587 1.633 0.182 0.310 1.475 0.460 0.393 0.258 1.469 0.967 0.549 0.114 0.089 334 chr11 65132986 65155882 + 0 NA exon (NM_001278250, exon 4 of 5) exon (NM_001278250, exon 4 of 5) 5423 NM_001300820 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding 0.873 1.258 0.818 0.671 1.188 1.813 1.092 0.942 7.500 2.918 1.786 0.804 0.996 1.083 1.476 1.478 0.643 1.627 1.025 0.315 1.950 1.726 1.083 1.248 2.779 1.326 0.640 1.163 2.082 3.719 2.213 1.355 1.301 1.869 1.312 1.214 2.533 2.045 1.289 1.355 0.606 0.413 357 chr11 72431747 72476249 + 0 NA intron (NM_001040118, intron 1 of 34) L2a|LINE|L2 9436 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 0.312 1.025 0.399 0.357 0.768 0.555 0.247 0.336 nan 2.111 0.732 0.438 0.299 0.981 1.232 1.030 0.108 0.410 0.354 0.072 0.863 0.565 0.499 0.332 2.145 1.286 0.616 0.715 0.674 0.973 0.684 0.641 1.272 0.911 0.980 0.504 0.717 1.364 0.370 0.618 0.292 0.238 219 chr1 235489554 235494648 + 0 NA promoter-TSS (NM_016374) promoter-TSS (NM_016374) 232 NR_036605 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 6.781 5.359 1.967 1.512 5.726 2.752 5.240 3.303 8.726 5.509 5.376 2.049 1.346 4.888 6.347 5.326 2.105 4.042 1.389 4.192 4.335 4.573 2.614 6.966 7.062 5.798 2.310 2.879 5.643 4.746 4.265 4.455 8.202 5.290 4.001 2.256 2.555 3.669 5.824 2.598 3.483 2.056 200 chr1 204041904 204078369 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 17890 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 0.748 0.669 0.070 0.231 0.594 0.081 0.328 0.447 6.222 3.004 0.620 0.518 0.167 0.382 2.010 1.106 0.349 1.357 1.172 0.121 1.205 0.805 0.590 0.779 1.017 0.740 0.439 0.555 0.490 2.027 0.406 0.236 0.671 0.789 0.084 0.940 0.362 0.891 0.719 0.389 0.052 0.029 216 chr1 234629154 234661678 + 0 NA Intergenic Intergenic 22109 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 1.653 1.110 0.428 0.364 0.730 0.910 1.369 0.851 2.571 0.590 1.678 0.289 0.281 1.717 2.464 0.784 1.089 0.930 0.120 0.205 2.061 1.178 0.268 2.240 0.668 0.137 0.130 0.676 2.035 0.979 0.390 1.647 1.631 0.742 0.584 0.496 0.921 1.448 1.232 0.459 0.142 0.080 734 chr16 54314552 54326587 + 0 NA promoter-TSS (NM_024336) promoter-TSS (NM_024336) -191 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 0.125 6.166 0.124 0.016 0.035 0.251 0.663 0.140 1.947 0.973 2.354 1.103 1.042 0.951 4.169 0.201 1.589 1.459 0.872 0.460 2.620 3.354 0.271 0.703 1.664 1.333 0.966 0.064 0.332 1.066 1.347 2.958 5.412 0.083 0.101 0.325 1.328 3.964 2.072 3.134 1.321 1.021 675 chr15 99189653 99195722 + 0 NA non-coding (NR_126453, exon 1 of 1) non-coding (NR_126453, exon 1 of 1) 919 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 5.166 1.921 0.755 0.811 4.523 0.313 5.400 0.748 6.345 3.760 2.408 2.025 2.004 0.919 3.733 2.604 0.832 2.719 0.479 1.875 2.230 3.334 3.758 3.114 2.781 2.851 1.815 1.477 2.914 11.495 2.749 4.511 5.244 6.519 2.486 4.209 6.644 8.110 2.751 1.593 0.968 0.713 1308 chr21 44374535 44378940 + 0 NA Intergenic Intergenic -5613 NR_049889 100847013 NR_049889 ENSG00000264580 MIR5692B - microRNA 5692b ncRNA 0.474 0.143 7.497 0.888 1.366 0.015 1.373 1.125 5.847 1.546 2.085 0.596 0.135 0.810 1.311 1.788 0.953 0.251 0.031 0.334 0.147 0.520 0.404 0.168 0.150 0.107 1.570 0.262 0.185 0.097 0.089 1.461 1.500 0.084 1.246 2.081 0.342 0.437 0.068 0.013 0.011 1295 chr21 36162597 36189811 + 0 NA intron (NM_001001890, intron 4 of 5) intron (NM_001001890, intron 4 of 5) 58082 NR_038886 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 0.499 1.453 0.256 0.708 1.673 0.590 1.474 0.813 5.765 3.648 0.591 0.978 1.076 1.552 0.935 1.616 0.854 1.098 0.055 0.010 1.520 1.173 0.311 0.762 0.942 0.596 0.200 0.204 2.006 0.643 0.916 1.186 1.951 1.374 0.405 2.073 0.464 0.397 0.597 1.230 0.751 0.656 519 chr13 34726102 34742379 + 0 NA Intergenic LTR16A|LTR|ERVL 342034 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 4.413 0.348 0.030 0.605 0.845 0.093 0.320 0.525 4.566 2.177 0.481 1.175 1.346 0.478 1.491 1.251 0.058 2.239 1.125 0.008 1.114 0.859 0.104 1.399 1.758 1.822 0.763 0.388 3.304 1.096 0.857 1.871 0.433 1.222 0.752 0.295 1.323 0.727 0.553 1.129 1.458 2.103 92 chr1 94309225 94314730 + 0 NA promoter-TSS (NR_030621) promoter-TSS (NR_030621) -411 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 3.773 3.483 1.399 1.069 2.744 4.545 3.285 0.804 5.146 3.488 2.407 1.781 0.814 1.520 4.985 1.313 1.632 2.492 12.695 2.593 1.458 1.644 2.411 3.509 10.601 2.534 1.136 1.635 2.761 3.648 4.558 2.135 4.569 4.670 7.456 1.377 1.840 6.228 1.801 1.284 2.092 1.200 401 chr12 7032941 7040495 + 0 NA promoter-TSS (NM_001940) promoter-TSS (NM_001940) -762 NM_001940 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 3.091 4.336 0.493 1.319 3.466 6.521 4.256 1.673 10.834 4.471 3.926 1.025 1.581 2.329 4.553 3.154 2.189 3.839 1.430 2.493 4.034 5.052 2.129 5.914 5.064 4.613 1.901 2.691 7.890 6.684 9.225 1.850 3.579 2.092 3.428 1.524 1.686 10.900 2.947 1.900 3.336 2.269 1907 chr8 141520082 141523114 + 0 NA promoter-TSS (NR_040712) promoter-TSS (NR_040712) 201 NM_017444 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 9.877 9.636 4.030 2.050 6.941 9.645 9.071 4.336 16.080 11.473 5.041 5.324 3.273 5.516 6.316 7.865 4.217 4.020 5.935 9.069 3.897 6.403 5.943 4.520 10.564 10.281 4.517 2.152 7.699 12.058 12.160 4.562 6.041 12.261 5.710 3.499 6.780 14.118 3.592 3.327 3.924 2.698 1483 chr4 77593611 77602524 + 0 NA intron (NM_020859, intron 2 of 10) AluY|SINE|Alu 101363 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 0.621 0.120 3.767 0.192 0.586 0.036 1.309 0.776 2.581 0.722 3.041 0.871 0.197 1.060 0.130 1.361 0.333 0.051 0.046 0.747 0.461 0.149 0.024 0.134 0.040 0.018 0.290 0.240 0.135 0.055 0.026 0.275 0.497 0.310 0.123 0.771 0.092 0.246 0.040 0.006 717 chr16 25056626 25067367 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger -16212 NR_135197 283887 Hs.652665 NR_135196 ENSG00000262155 LOC283887 - uncharacterized LOC283887 ncRNA 1.740 1.874 0.064 1.227 1.528 5.261 1.240 0.508 2.092 0.762 0.476 0.817 0.820 2.160 1.505 3.048 0.922 2.338 0.401 0.091 2.519 2.161 0.663 6.269 3.792 1.128 0.501 1.107 3.314 2.877 1.508 2.926 1.923 1.094 5.746 0.822 0.554 3.048 1.665 1.113 0.869 0.829 1280 chr20 62282027 62291190 + 0 NA Intergenic Intergenic -1645 NR_075070 50861 Hs.639609 NM_015894 ENSG00000197457 STMN3 SCLIP stathmin 3 protein-coding 1.403 4.455 0.211 0.414 1.203 2.929 1.270 0.548 5.693 3.149 1.760 0.641 1.919 1.165 1.317 1.329 0.450 0.638 1.364 0.892 0.937 0.672 1.016 0.751 2.307 1.303 0.698 0.459 1.362 1.342 4.403 0.966 0.553 0.589 1.608 0.506 0.831 4.830 1.261 2.023 1.446 1.288 1446 chr3 184078205 184082663 + 0 NA promoter-TSS (NM_001171087) promoter-TSS (NM_001171087) -337 NM_001278714 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 11.127 3.590 1.724 1.434 5.098 4.339 6.736 2.147 6.184 5.437 4.806 1.804 2.213 4.044 6.272 3.275 3.186 2.606 2.479 3.450 5.406 7.571 4.302 3.853 9.020 9.707 4.210 3.275 4.204 4.513 7.095 1.554 4.036 5.002 6.475 1.785 2.997 4.841 4.380 2.646 3.513 1.960 1389 chr3 69128312 69144086 + 0 NA intron (NM_006407, intron 1 of 2) AluJo|SINE|Alu 2109 NM_006407 10550 Hs.518060 NM_006407 ENSG00000144746 ARL6IP5 DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding 2.594 1.906 1.890 1.650 4.375 1.687 5.912 2.627 3.093 2.383 2.242 2.260 1.719 4.010 2.343 2.914 1.480 1.578 0.241 0.422 1.887 1.932 0.549 3.994 2.657 1.483 0.775 1.969 1.508 1.946 1.906 2.034 1.608 2.569 11.661 1.240 0.817 0.961 3.131 1.524 0.303 0.207 1402 chr3 128940340 128969550 + 0 NA Intergenic AluJb|SINE|Alu -13508 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 0.797 1.612 0.070 0.838 1.039 0.326 1.676 1.041 1.790 0.694 1.107 0.737 0.752 0.792 1.146 3.735 1.014 1.311 0.333 0.203 3.457 3.264 0.434 1.226 1.283 0.475 0.310 0.418 1.401 1.438 1.973 1.819 3.015 0.937 4.311 0.633 0.743 1.607 1.575 0.748 0.177 0.114 1927 chr9 4287538 4303438 + 0 NA intron (NM_001042413, intron 1 of 10) intron (NM_001042413, intron 1 of 10) 4547 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 3.679 1.209 0.012 1.312 2.614 3.731 1.716 0.279 1.388 1.087 0.654 1.934 0.298 1.213 1.529 3.003 0.253 1.043 0.259 0.009 2.087 1.927 0.056 3.799 0.418 0.518 0.260 2.132 1.288 2.956 1.818 4.423 1.782 2.717 0.854 0.754 0.136 0.723 0.776 1.442 3.887 3.561 393 chr11 130182386 130190077 + 0 NA Intergenic Intergenic -1624 NM_001301099 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 1.471 1.413 4.033 0.317 1.493 1.336 1.985 1.533 1.801 1.235 0.739 0.589 0.464 2.548 1.809 1.131 0.906 0.704 0.465 0.649 1.515 1.481 1.049 0.501 3.294 1.615 0.851 1.666 1.028 1.577 1.834 1.066 2.157 1.665 2.557 1.426 1.215 1.686 1.172 0.932 0.532 0.331 7 chr1 6444602 6454995 + 0 NA intron (NM_007274, intron 1 of 8) AluSx1|SINE|Alu -3915 NM_181864 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 0.990 1.672 0.120 0.553 1.511 3.377 1.558 0.438 nan 0.809 0.679 1.116 0.681 0.766 0.990 1.366 0.790 0.709 0.494 0.894 0.962 1.058 1.111 0.827 3.088 1.494 0.760 0.575 0.616 2.123 4.554 0.591 1.268 3.349 1.995 0.768 0.867 2.741 1.086 1.201 0.670 0.669 1137 chr2 70348409 70371920 + 0 NA Intergenic L2a|LINE|L2 -7716 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 1.499 2.491 1.419 0.935 2.161 2.972 2.719 1.192 7.035 3.531 2.179 1.399 1.631 1.602 2.678 2.769 2.005 2.970 1.041 2.589 2.566 2.510 1.912 5.673 1.773 1.583 0.828 1.526 4.302 4.727 2.668 3.033 3.090 3.785 2.816 1.483 3.244 3.499 1.882 1.947 2.949 3.291 1444 chr3 184031493 184039334 + 0 NA intron (NM_001194947, intron 5 of 32) intron (NM_001194947, intron 5 of 32) 2461 NM_182917 1981 Hs.433750 NM_004953 ENSG00000114867 EIF4G1 EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18 eukaryotic translation initiation factor 4 gamma 1 protein-coding 6.893 2.909 1.881 0.868 2.933 2.281 4.385 1.589 5.274 3.412 3.297 0.855 1.009 2.004 3.170 3.281 1.839 1.994 1.233 1.202 4.748 5.699 2.168 3.388 4.949 4.896 2.489 1.529 3.240 3.316 4.585 1.322 3.313 3.831 4.103 1.269 2.006 1.920 2.767 2.227 1.682 0.966 1724 chr7 2280390 2311165 + 0 NA intron (NM_013321, intron 10 of 10) intron (NM_013321, intron 10 of 10) 1435 NR_106895 102465503 NR_106895 ENSG00000106266 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 1.164 0.789 0.122 0.406 1.164 0.538 1.027 0.341 nan 0.815 2.050 0.665 0.396 0.440 2.074 1.396 1.181 1.162 0.204 0.316 0.560 0.438 0.401 0.675 1.944 0.520 0.289 0.812 0.388 0.563 0.906 0.290 0.569 1.447 0.688 0.442 0.814 1.104 1.461 0.408 1.248 0.972 1614 chr6 1623625 1642513 + 0 NA intron (NM_001500, intron 9 of 10) AluJr|SINE|Alu 22388 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 0.271 0.087 0.035 0.304 0.701 0.046 0.337 0.267 3.504 1.566 3.027 0.318 0.075 0.339 0.851 0.744 0.038 0.355 0.137 0.044 0.500 0.311 0.298 0.138 0.192 0.080 0.063 0.130 0.242 0.213 0.196 0.067 0.346 0.593 0.084 0.421 0.293 0.423 0.560 0.049 0.021 0.003 97 chr1 97735880 97745829 + 0 NA intron (NR_046590, intron 2 of 4) L2b|LINE|L2 179375 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 1.738 0.199 0.062 1.509 3.846 0.063 2.832 1.024 8.947 4.574 2.437 2.088 0.825 2.286 1.288 1.479 0.185 2.204 0.704 0.014 1.736 1.045 0.031 0.080 0.177 0.145 0.070 2.522 0.222 0.218 0.086 0.714 2.260 0.562 0.295 0.553 0.100 0.023 1.542 0.228 0.029 0.010 1328 chr22 29187002 29225782 + 0 NA Intergenic AluSx4|SINE|Alu -9832 NM_001079539 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 0.957 0.682 0.722 0.260 1.037 0.744 0.654 0.299 nan 2.419 1.696 0.260 0.152 0.473 1.549 0.518 0.264 0.967 1.941 0.243 0.518 0.510 0.230 0.450 0.664 0.504 0.256 0.216 0.465 1.683 0.599 2.942 4.376 1.625 0.530 0.789 1.761 0.737 0.735 0.263 0.155 0.086 831 chr17 36600535 36613722 + 0 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 22408 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 9.406 4.572 0.192 0.201 0.851 0.212 0.489 1.145 3.010 0.902 0.565 0.630 0.823 0.324 0.745 1.429 2.421 0.539 0.053 0.084 0.746 0.555 3.633 0.277 9.305 6.358 2.133 0.240 0.286 1.229 1.645 0.079 0.421 1.031 1.448 0.567 0.063 0.283 0.396 1.618 0.140 0.104 1529 chr5 34463521 34537652 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -155847 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 0.175 0.165 0.066 0.251 0.465 0.146 0.479 0.543 5.449 1.236 5.132 0.286 0.374 0.463 1.237 0.412 0.147 0.330 0.526 0.013 0.927 0.528 0.041 0.216 0.104 0.079 0.059 1.007 0.131 0.257 0.096 0.432 1.238 0.299 0.298 0.230 0.582 0.233 0.215 0.043 0.039 0.031 1950 chr9 100983213 100995861 + 0 NA intron (NM_018421, intron 5 of 12) L2a|LINE|L2 1962 NR_106913 102465514 NR_106913 ENSG00000278412 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 0.769 1.622 0.775 0.649 1.813 0.634 0.803 1.370 1.701 0.687 0.817 0.990 0.709 1.465 1.434 2.366 1.159 1.295 0.055 0.011 4.003 3.191 2.449 0.745 3.994 3.487 1.628 0.055 2.397 0.631 0.388 1.563 5.020 1.997 0.099 0.793 2.085 0.217 1.038 1.929 2.651 1.742 121 chr1 151135204 151140432 + 0 NA promoter-TSS (NM_001204856) promoter-TSS (NM_001204856) 552 NM_212551 388695 Hs.591482 NM_212551 ENSG00000163155 LYSMD1 SB145 LysM domain containing 1 protein-coding 1.771 2.008 0.317 1.160 1.663 1.311 1.355 1.067 18.440 13.049 1.561 1.424 1.302 1.712 1.974 2.687 0.733 2.022 1.478 1.006 2.514 1.819 0.850 2.814 1.734 1.685 1.136 0.587 1.051 1.923 1.928 3.745 4.477 1.955 1.335 1.450 1.915 3.015 2.232 0.537 0.831 0.497 1765 chr7 64452876 64470312 + 0 NA intron (NM_001007253, intron 1 of 1) intron (NM_001007253, intron 1 of 1) 5530 NM_001007253 2086 Hs.250693 NM_001007253 ENSG00000213462 ERV3-1 ERV-R|ERV3|ERVR|HERV-R|HERVR|envR endogenous retrovirus group 3 member 1 protein-coding 0.281 0.530 0.259 1.051 2.407 0.345 0.618 0.380 8.770 6.153 5.075 1.717 0.250 0.570 0.722 1.574 0.302 0.477 0.143 0.087 0.353 0.264 0.186 0.241 0.401 0.135 0.116 1.757 0.601 0.425 0.717 0.159 0.612 1.882 0.329 0.751 0.248 0.232 0.492 0.231 0.893 0.461 1122 chr2 42784735 42798057 + 0 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) -3789 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 0.943 0.668 0.289 0.312 1.219 0.884 0.572 0.303 nan 1.314 1.708 0.540 0.248 0.319 5.196 1.010 1.624 0.402 0.383 1.153 0.442 0.318 0.746 0.812 1.050 0.908 0.591 1.276 0.508 1.983 1.532 0.991 2.257 1.148 0.687 0.964 4.881 2.325 0.605 0.339 0.258 0.188 666 chr15 90355012 90373528 + 0 NA Intergenic L1M5|LINE|L1 -6198 NM_001150 290 Hs.1239 NM_001150 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl aminopeptidase, membrane protein-coding 0.498 2.061 0.027 0.429 0.281 1.052 0.084 0.432 0.352 0.100 0.100 0.500 0.218 1.134 3.458 1.613 0.993 1.647 0.048 0.041 0.818 0.520 0.250 0.175 5.569 0.478 0.315 0.116 6.787 1.086 1.080 0.034 0.403 0.225 0.197 0.077 0.777 0.716 1.415 0.808 0.365 0.386 59 chr1 43822869 43841869 + 0 NA intron (NM_001256402, intron 1 of 6) intron (NM_001256402, intron 1 of 6) 1040 NM_001256399 64834 Hs.25597 NM_022821 ENSG00000066322 ELOVL1 CGI-88|Ssc1 ELOVL fatty acid elongase 1 protein-coding 3.204 2.630 0.693 1.093 2.258 2.234 3.427 1.575 3.231 1.323 1.335 1.793 0.992 1.962 2.391 3.773 1.168 2.119 0.930 0.823 1.920 1.759 1.872 1.934 4.852 6.052 2.156 2.218 3.361 1.915 3.730 0.874 1.298 2.051 4.124 0.902 1.751 4.055 1.872 1.777 3.025 2.704 1018 chr19 37261418 37268106 + 0 NA intron (NM_001294306, intron 1 of 1) intron (NM_001294306, intron 1 of 1) 742 NM_001294306 728485 Hs.157101 NM_001294306 LOC728485 - uncharacterized LOC728485 protein-coding 1.703 2.195 0.762 2.863 6.614 0.737 1.984 0.205 2.033 1.206 0.518 1.686 0.337 0.457 0.978 1.126 0.801 0.255 0.192 0.519 0.921 0.857 0.044 0.853 2.535 3.216 1.596 0.608 0.875 0.329 5.232 0.294 0.288 7.974 1.173 0.186 2.190 1.202 0.518 1.145 0.600 1226 chr20 30247311 30337773 + 0 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -16768 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 4.078 1.963 1.709 0.955 2.488 3.736 3.052 1.782 nan 3.259 3.455 1.370 1.432 1.581 1.705 2.094 1.534 12.326 0.752 0.456 4.511 4.398 0.910 0.643 2.052 2.209 0.937 1.613 12.393 3.167 1.865 2.369 0.916 3.916 2.843 1.274 1.761 0.808 1.886 2.506 3.917 3.896 662 chr15 85274912 85280190 + 0 NA Intergenic Intergenic -14267 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 3.079 2.583 2.220 1.884 3.144 2.609 3.956 2.698 7.501 2.879 1.873 2.906 1.220 2.978 2.881 4.379 0.018 2.084 0.135 0.026 2.340 2.293 0.125 0.226 0.176 0.357 0.148 2.646 0.291 6.864 0.163 5.312 4.877 3.950 0.105 3.502 0.491 0.104 2.676 1.739 0.305 0.374 602 chr14 75076851 75089046 + 0 NA Intergenic MIRb|SINE|MIR -3914 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 2.765 1.963 0.161 1.399 1.407 2.461 2.740 3.277 3.860 1.323 1.298 2.566 3.712 1.310 6.169 3.580 0.562 3.068 0.025 0.023 3.862 3.010 0.170 0.722 6.294 1.562 0.780 0.710 11.511 1.580 7.612 0.136 1.349 0.670 1.598 0.511 0.312 2.674 1.755 5.211 7.575 5.743 1782 chr7 74985660 74992062 + 0 NA promoter-TSS (NR_027776).3 promoter-TSS (NR_027776).3 414 NR_040583 54441 Hs.632310 NM_018991 STAG3L1 STAG3L1P|STAG3L2|STAG3L3 stromal antigen 3-like 1 (pseudogene) pseudo 1.724 2.246 0.773 0.947 2.478 2.527 3.838 0.939 2.900 1.961 4.753 1.327 1.200 1.399 2.746 3.343 1.907 3.259 1.430 2.375 2.073 2.973 2.428 2.781 5.434 3.336 2.094 1.864 2.758 3.433 7.060 1.864 2.701 3.328 4.222 3.038 1.950 4.111 2.348 2.064 2.519 1.734 1706 chr6 129808589 129829693 + 0 NA intron (NM_000426, intron 58 of 64) intron (NM_000426, intron 58 of 64) 212229 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 3.893 0.785 0.015 1.196 1.715 1.899 1.803 1.608 2.310 1.350 1.726 0.878 1.668 3.317 0.417 2.164 0.255 2.036 0.019 0.026 2.896 2.476 0.014 1.258 2.057 1.842 0.834 2.473 1.838 0.220 1.964 0.374 0.398 1.911 1.312 0.418 0.130 1.488 1.690 1.588 4.145 5.711 577 chr14 55912823 55928712 + 0 NA Intergenic Intergenic -13504 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 0.231 0.309 0.036 0.716 1.096 0.805 0.783 0.332 3.418 0.689 0.752 0.919 0.804 0.465 1.292 1.718 0.224 1.736 0.064 0.070 3.777 2.802 0.105 2.235 1.487 0.469 0.225 1.763 2.625 0.744 0.931 0.432 2.070 0.875 1.730 0.523 0.417 4.052 2.737 0.495 0.758 0.863 693 chr16 3686461 3702203 + 0 NA Intergenic AluSx1|SINE|Alu -8608 NM_005223 1773 Hs.629638 NM_005223 ENSG00000213918 DNASE1 DNL1|DRNI deoxyribonuclease 1 protein-coding 0.242 0.205 0.012 0.264 1.164 0.036 0.258 0.147 8.794 2.562 0.846 0.677 0.067 0.153 0.634 1.169 0.188 0.140 0.711 0.053 0.304 0.137 0.117 0.138 0.085 0.088 0.030 0.606 0.121 0.491 0.199 0.587 2.385 1.070 0.129 0.327 1.971 0.165 0.129 0.024 0.018 0.016 1007 chr19 34848231 34858830 + 0 NA Intergenic Intergenic -2115 NM_001289789 2821 Hs.466471 NM_000175 ENSG00000105220 GPI AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 glucose-6-phosphate isomerase protein-coding 1.869 2.890 2.300 0.786 3.015 2.809 1.141 0.400 2.376 1.081 1.059 0.985 0.594 1.265 1.839 1.532 1.164 2.771 0.905 0.327 1.857 1.728 1.879 2.695 2.783 2.314 1.301 0.401 1.439 6.563 5.481 3.018 1.809 1.454 1.439 1.641 1.851 2.252 0.657 1.050 0.321 0.219 87 chr1 90436806 90462954 + 0 NA Intergenic LTR12C|LTR|ERV1 10645 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 0.597 0.621 0.751 0.392 0.860 0.328 0.455 0.149 1.139 0.495 0.517 0.303 0.104 0.557 4.192 0.408 1.032 1.281 0.352 0.238 1.008 0.853 0.327 0.749 1.240 0.412 0.185 0.416 1.078 1.080 0.548 0.190 1.255 0.932 0.724 0.286 0.568 0.478 0.301 0.214 0.185 0.132 1340 chr22 38170416 38184716 + 0 NA Intergenic Intergenic -23548 NM_005318 3005 Hs.745024 NM_005318 ENSG00000189060 H1F0 H10|H1FV H1 histone family member 0 protein-coding 0.406 0.250 0.117 1.869 3.295 0.091 2.383 1.285 7.305 2.140 0.760 1.623 1.175 0.647 1.152 3.418 0.515 0.479 0.405 0.058 0.632 0.401 0.068 0.083 0.791 0.176 0.135 0.640 0.163 0.337 0.263 0.324 1.329 2.776 1.462 0.992 2.288 0.251 0.712 0.205 0.072 0.108 1287 chr21 16422714 16439363 + 0 NA intron (NM_003489, intron 1 of 3) intron (NM_003489, intron 1 of 3) 6088 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 4.549 1.048 1.614 0.968 2.931 1.795 3.241 1.838 4.285 2.966 1.983 1.388 1.381 3.188 3.046 2.488 0.805 0.843 0.159 1.410 1.204 0.759 4.001 2.990 3.244 1.645 3.190 1.170 3.222 1.781 1.090 3.688 1.122 2.559 0.780 1.841 0.778 1.725 0.634 0.204 0.123 743 chr16 67061910 67065083 + 0 NA intron (NM_001755, intron 1 of 5) CpG 446 NM_022845 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor beta subunit protein-coding 6.756 4.349 0.937 1.253 6.161 5.517 5.039 1.294 4.697 2.793 3.620 1.430 1.615 1.782 4.706 3.139 3.430 4.513 2.139 4.521 3.964 4.680 5.222 5.780 7.076 11.241 5.050 2.184 5.279 6.285 7.421 3.848 6.110 6.595 5.448 2.467 2.621 6.741 3.374 2.962 2.894 1.630 1301 chr21 37355893 37369272 + 0 NA intron (NR_110418, intron 1 of 5) intron (NR_110418, intron 1 of 5) 14383 NR_110418 101928269 Hs.589909 NR_110418 LOC101928269 - uncharacterized LOC101928269 ncRNA 0.074 0.023 0.352 0.014 0.063 0.014 0.161 2.394 0.463 4.626 0.022 0.040 0.043 0.021 0.007 0.069 0.045 0.032 0.037 0.016 0.011 0.056 0.085 0.041 0.012 0.012 0.126 0.061 0.016 0.041 0.049 0.075 0.035 0.101 0.040 0.052 0.047 0.034 0.030 0.004 995 chr19 15176681 15188631 + 0 NA Intergenic AluSq|SINE|Alu -15221 NM_001004713 126370 Hs.631610 NM_001004713 ENSG00000094661 OR1I1 OR19-20|OR1I1P|OR1I1Q olfactory receptor family 1 subfamily I member 1 protein-coding 0.423 0.077 1.176 0.125 0.048 0.119 0.017 nan 0.065 0.100 0.024 0.010 10.598 0.084 3.386 0.039 0.017 0.035 0.006 0.035 0.023 0.036 4.355 0.171 0.071 0.038 0.068 0.061 0.055 0.506 1.040 0.048 0.008 0.031 1.475 1.854 0.066 0.272 0.005 0.013 1384 chr3 57093099 57104427 + 0 NA intron (NM_181727, intron 1 of 1) L1MB2|LINE|L1 4294 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 1.038 1.033 0.306 1.506 2.361 0.050 3.356 2.160 2.450 0.573 0.479 1.252 0.450 1.380 2.083 3.228 1.474 1.684 0.063 0.073 1.051 0.809 0.066 0.574 1.236 0.673 0.385 1.514 2.006 1.107 1.164 0.791 1.559 3.214 1.109 1.230 0.291 0.144 2.744 0.539 1.815 1.669 1095 chr19 58890961 58899911 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 2789 NR_039910 100616168 NR_039910 ENSG00000266640 MIR4754 mir-4754 microRNA 4754 ncRNA 4.738 5.134 1.174 1.228 2.986 3.515 4.526 1.322 5.659 3.924 4.610 1.892 1.552 1.405 2.604 2.116 1.484 3.549 1.883 1.347 1.404 1.763 2.507 2.984 5.304 2.342 1.054 2.568 1.931 4.663 2.895 3.933 2.210 3.082 2.901 2.699 3.067 4.363 4.382 1.586 1.933 1.333 1218 chr20 13502793 13507806 + 0 NA intron (NR_136628, intron 9 of 12) intron (NR_136628, intron 9 of 12) 114284 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 0.172 0.217 0.113 0.148 0.088 0.021 0.095 0.063 0.146 0.205 0.076 0.145 0.070 0.095 0.110 0.040 0.083 0.029 0.116 0.486 0.147 0.055 0.047 0.061 0.199 0.472 0.104 8.943 0.292 0.056 0.019 0.146 0.180 0.037 0.349 0.092 0.046 840 chr17 38170043 38184022 + 0 NA intron (NM_001079518, intron 22 of 24) AluJo|SINE|Alu 5418 NM_172219 1440 Hs.2233 NM_000759 ENSG00000108342 CSF3 C17orf33|CSF3OS|GCSF colony stimulating factor 3 protein-coding 1.540 1.306 0.847 0.270 0.655 0.745 0.349 0.182 1.671 0.553 2.648 0.604 0.633 0.803 0.255 0.994 0.103 0.140 0.136 0.109 0.247 0.136 0.216 0.442 9.822 3.736 1.350 0.117 0.321 0.681 0.204 0.383 0.285 0.463 0.178 0.088 0.241 1.210 0.840 7.302 0.678 0.527 123 chr1 151224302 151233882 + 0 NA intron (NM_001330692, intron 1 of 9) AluSq|SINE|Alu 1895 NM_002810 5710 Hs.505059 NM_002810 ENSG00000159352 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome 26S subunit, non-ATPase 4 protein-coding 1.076 1.400 0.575 0.831 1.661 1.245 1.020 0.526 10.612 8.268 1.072 0.869 0.879 1.107 1.198 1.415 0.430 0.875 0.388 0.492 0.873 0.925 0.510 1.857 1.606 1.103 0.489 0.456 0.730 1.188 1.645 2.786 3.018 1.943 1.011 0.842 1.440 2.048 1.434 0.222 0.307 0.265 900 chr17 73142883 73158794 + 0 NA promoter-TSS (NM_001288609) promoter-TSS (NM_001288609) -60 NM_001002033 51155 Hs.532803 NM_016185 ENSG00000189159 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 3.040 1.378 0.476 0.869 2.564 0.782 1.137 1.968 3.811 2.299 1.640 1.718 0.534 1.008 1.451 4.687 0.260 0.892 0.244 0.401 1.057 0.838 0.484 1.573 1.182 0.800 0.454 0.703 0.734 1.908 1.336 0.719 1.234 3.150 2.230 0.870 1.091 1.414 1.191 0.757 0.510 0.242 1072 chr19 48892877 48904338 + 0 NA intron (NM_000836, intron 1 of 12) intron (NM_000836, intron 1 of 12) 475 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|EIEE46|GluN2D|NMDAR2D|NR2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding 1.849 5.170 0.178 0.578 2.266 1.833 2.215 0.577 nan 1.383 2.171 1.166 0.226 0.817 2.701 1.286 1.463 2.733 0.695 0.554 0.995 1.081 1.099 1.462 2.719 1.545 0.873 0.832 1.012 5.467 4.912 1.190 1.236 2.961 1.355 0.663 1.760 5.188 1.361 0.776 1.051 0.720 1392 chr3 71156656 71206578 + 0 NA intron (NM_032682, intron 6 of 20) intron (NM_032682, intron 6 of 20) -1525 NM_001244815 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 0.512 1.066 0.013 0.254 0.489 0.091 0.813 0.492 3.274 1.888 0.425 0.541 0.495 0.931 0.079 0.997 0.019 0.608 0.384 0.017 0.842 0.517 0.012 0.257 0.206 0.180 0.119 0.294 0.507 0.357 0.032 0.879 0.688 0.447 1.773 0.616 0.318 0.071 0.546 0.573 0.021 0.007 1488 chr4 106471163 106478715 + 0 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) 1162 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 2.050 0.126 0.050 0.175 0.609 0.050 1.228 0.127 2.657 0.839 4.653 2.057 0.172 2.222 0.279 0.294 0.050 0.171 0.066 0.543 0.354 0.019 0.050 0.061 0.024 0.577 0.094 0.360 0.066 3.950 2.936 0.560 0.060 0.692 4.144 0.016 0.095 0.031 0.015 0.007 1521 chr5 10625482 10638206 + 0 NA intron (NM_001164440, intron 2 of 3) MER72|LTR|ERV1 67409 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 0.174 0.295 0.010 4.195 4.861 0.210 0.228 1.411 1.488 0.498 0.314 0.954 0.472 2.360 0.181 5.311 0.112 0.537 0.047 0.044 0.789 0.402 0.295 0.200 1.395 1.950 0.980 0.845 0.179 0.499 0.473 0.199 0.174 4.176 0.732 0.144 0.160 0.274 0.713 0.161 0.172 0.121 251 chr10 50757871 50762077 + 0 NA Intergenic Intergenic -12390 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 0.488 0.223 4.794 0.403 0.980 6.452 0.960 1.814 0.210 0.116 1.388 0.525 0.196 0.648 6.437 2.107 1.810 0.045 0.023 0.033 0.630 0.208 1.369 0.956 23.889 9.408 3.446 0.475 0.285 0.101 0.235 0.110 0.457 1.315 0.874 0.260 0.646 6.137 5.530 0.763 0.027 0.033 1902 chr8 129042750 129049814 + 0 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -15116 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 0.486 0.697 0.017 1.162 1.989 0.527 0.966 0.806 4.561 2.569 1.033 0.579 0.953 0.587 0.545 1.835 0.054 43.791 0.451 0.099 1.299 0.500 0.198 4.533 0.480 0.316 0.202 0.259 0.593 1.648 0.589 0.391 1.030 5.969 2.114 0.086 0.593 1.835 4.641 0.290 0.065 0.036 1168 chr2 169866309 169873416 + 0 NA exon (NM_003742, exon 5 of 28) exon (NM_003742, exon 5 of 28) 17971 NM_003742 8647 Hs.658439 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 2.721 0.138 0.017 1.786 2.604 0.054 1.780 0.967 4.376 1.882 2.367 2.072 0.350 5.680 0.444 1.487 0.027 1.141 0.015 0.592 0.193 0.042 0.241 0.090 0.152 0.066 1.166 0.281 0.263 0.080 0.367 1.116 0.293 1.921 2.465 0.269 0.057 0.403 0.932 0.008 987 chr19 11046532 11080387 + 0 NA Intergenic Intergenic -8139 NM_001128844 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 0.783 0.597 1.098 0.714 1.534 0.194 1.260 0.530 nan 1.824 1.969 0.514 0.304 0.761 1.706 1.271 0.660 0.446 0.568 0.471 1.169 1.106 1.064 0.494 0.776 0.783 0.456 1.222 0.675 0.883 1.201 0.879 1.258 1.946 0.407 0.330 1.019 1.088 2.057 0.468 0.245 0.161 1091 chr19 56882436 56905769 + 0 NA TTS (NM_001320371) TTS (NM_001320371) 10868 NM_001320371 147948 Hs.244391 NM_144690 ENSG00000018869 ZNF582 - zinc finger protein 582 protein-coding 0.176 0.401 0.154 0.332 1.441 0.257 0.076 0.123 0.055 0.035 0.100 1.172 0.068 0.061 0.298 0.160 0.110 0.059 0.021 0.069 0.118 0.025 0.094 3.542 0.209 0.087 0.121 0.085 0.138 0.846 0.061 0.031 2.014 0.351 0.036 0.264 0.441 0.092 6.578 5.673 71 chr1 59217550 59232637 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 24692 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 0.611 1.028 0.012 1.662 2.420 0.348 3.179 1.877 nan 0.523 1.776 2.272 2.458 2.516 0.329 5.235 0.373 1.875 0.073 0.009 2.707 2.333 0.156 0.414 2.745 1.092 0.746 4.162 7.598 0.243 1.134 0.351 0.671 1.676 7.843 0.347 0.284 0.412 1.431 1.416 0.603 0.588 818 chr17 29150470 29160132 + 0 NA Intergenic AluSx|SINE|Alu -3523 NM_015986 51379 Hs.649372 NM_015986 ENSG00000176390 CRLF3 CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2 cytokine receptor like factor 3 protein-coding 1.893 2.400 0.792 1.307 3.288 1.127 1.365 0.820 2.734 1.190 2.135 0.864 0.977 1.785 1.985 2.054 0.732 0.737 0.434 0.719 1.362 1.031 1.085 2.356 2.426 1.456 0.750 0.502 1.992 2.721 1.353 1.356 1.431 3.779 1.977 1.483 1.096 2.704 1.282 0.733 0.614 0.433 860 chr17 41605229 41637788 + 0 NA intron (NM_001322219, intron 23 of 23) intron (NM_001322219, intron 23 of 23) 1797 NM_001261438 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 0.523 0.776 0.051 0.221 0.556 0.215 0.532 0.569 nan 1.601 1.008 0.337 0.306 0.185 1.094 0.583 0.088 1.341 0.476 0.442 0.681 0.484 0.430 4.021 1.265 0.427 0.230 0.286 0.819 3.118 0.430 0.351 0.873 0.875 0.327 0.549 0.413 1.505 0.269 0.261 0.467 0.240 1542 chr5 44859479 44882055 + 0 NA Intergenic Intergenic 61740 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 1.271 0.193 0.027 1.229 2.375 0.157 1.130 0.707 1.462 0.815 0.662 1.140 2.313 0.707 0.302 1.078 0.131 0.564 0.125 7.063 0.830 0.493 0.032 0.070 0.303 0.433 0.242 0.575 2.050 0.123 0.476 0.621 0.356 1.038 0.459 0.189 0.066 0.476 0.759 0.524 1.278 1.576 1591 chr5 148924236 148945013 + 0 NA Intergenic AluSg|SINE|Alu -3509 NM_001271741 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 2.318 1.823 1.354 1.181 2.406 1.933 2.073 1.655 7.993 5.270 2.908 1.766 2.595 2.517 2.707 3.825 1.617 2.156 0.639 0.633 3.692 3.667 0.684 3.094 2.035 1.899 1.009 2.163 3.777 1.665 4.273 1.565 2.411 2.987 5.476 1.337 1.860 2.123 1.859 2.048 3.116 2.561 1273 chr20 55202874 55207671 + 0 NA intron (NM_003222, intron 1 of 6) CpG-16801 914 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 1.606 0.065 2.007 0.039 0.775 9.041 4.273 0.944 7.887 4.299 8.244 1.576 1.118 2.097 5.395 1.321 3.966 0.057 0.022 0.116 1.240 1.160 2.271 1.214 3.347 1.280 0.718 1.347 0.313 6.237 0.132 9.147 6.087 1.475 1.964 0.944 7.857 13.574 2.075 1.118 0.768 0.731 1024 chr19 39119773 39211706 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 27483 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 4.662 2.658 1.335 1.221 3.064 1.082 1.435 0.826 2.491 1.342 1.685 1.032 2.115 1.140 1.875 2.668 1.579 2.868 0.461 0.066 1.939 1.758 1.275 1.605 5.027 2.831 1.354 0.775 2.225 5.091 3.497 1.145 0.695 4.497 1.150 1.462 2.161 0.487 1.271 2.049 3.923 3.991 1188 chr2 217967662 217972143 + 0 NA Intergenic Intergenic -177554 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 3.778 1.234 0.461 0.042 0.491 2.573 2.703 0.751 0.489 0.785 0.196 2.138 3.914 1.918 4.802 1.486 2.227 2.557 2.294 0.132 1.039 5.059 8.520 3.170 1.664 2.895 0.291 0.492 0.060 0.907 0.064 0.724 0.900 0.720 0.417 1.462 2.689 0.951 0.653 898 chr17 73069643 73096488 + 0 NA promoter-TSS (NM_001271765) promoter-TSS (NM_001271765) -757 NM_001271765 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 2.846 2.574 0.808 0.573 1.025 0.958 2.800 2.137 4.574 1.974 1.658 1.469 0.589 2.244 2.828 3.423 1.158 1.530 0.601 0.042 2.358 2.173 0.895 4.941 4.007 0.857 0.423 1.303 0.874 6.320 0.866 0.750 3.693 3.208 0.998 0.710 2.400 2.019 1.603 0.704 2.499 1.696 844 chr17 38435381 38447125 + 0 NA Intergenic AluSx1|SINE|Alu -2893 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 15.013 1.831 0.528 0.902 1.750 0.849 1.730 1.077 1.653 0.638 1.625 0.682 0.529 1.090 1.916 2.163 0.764 0.506 0.119 0.283 1.192 0.900 0.465 0.780 1.284 0.691 0.379 1.699 0.879 0.600 0.532 1.879 1.110 3.479 0.878 0.853 1.014 0.947 1.154 0.517 2.060 1.260 1324 chr22 20918663 20926116 + 0 NA intron (NM_001003891, intron 7 of 17) AluJb|SINE|Alu 60054 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 2.925 2.138 14.812 1.183 2.538 1.719 3.257 3.681 nan 0.372 4.208 1.748 0.333 0.658 2.033 2.097 3.428 0.408 0.041 0.037 0.912 0.831 2.182 0.087 1.347 0.391 0.147 1.187 1.932 0.360 0.292 0.078 0.842 7.793 0.082 0.738 3.466 0.176 1.470 1.122 1.091 0.787 931 chr17 79878824 79887378 + 0 NA intron (NM_002359, intron 1 of 2) intron (NM_002359, intron 1 of 2) -1657 NM_032711 4097 Hs.252229 NM_002359 ENSG00000197063 MAFG hMAF MAF bZIP transcription factor G protein-coding 2.157 9.677 0.421 1.392 4.391 10.723 1.476 0.900 5.159 3.507 1.709 1.002 1.643 2.276 2.984 3.694 1.078 3.469 1.365 1.506 3.612 5.017 2.609 8.694 7.892 3.593 1.500 0.997 8.086 8.808 4.620 2.448 4.787 5.476 2.618 4.389 2.978 5.813 1.359 3.281 1.845 0.931 1039 chr19 42225040 42308621 + 0 NA intron (NM_002483, intron 4 of 5) MIRc|SINE|MIR 7402 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 0.094 0.103 0.311 0.436 0.604 0.039 1.172 0.406 nan 5.485 7.131 0.429 0.095 0.949 1.979 1.245 0.039 0.074 0.596 0.012 0.886 0.447 0.058 0.049 0.134 0.056 0.028 1.064 0.133 0.348 0.105 1.163 1.248 0.976 0.830 1.514 3.301 0.080 0.128 0.054 0.023 0.009 1470 chr4 26218618 26229825 + 0 NA Intergenic L1MA4|LINE|L1 -97111 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 1.248 0.193 0.014 1.751 2.156 0.046 0.701 1.370 2.525 0.800 0.305 0.686 0.389 1.165 0.479 4.245 0.102 0.340 0.054 0.025 0.424 0.098 0.039 0.057 0.084 0.328 0.216 0.819 0.215 0.080 0.193 0.028 0.173 1.171 0.190 0.219 0.081 0.111 0.857 0.493 0.026 0.019 596 chr14 69004582 69079606 + 0 NA intron (NM_001321818, intron 10 of 10) MIRb|SINE|MIR 53410 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.788 0.481 0.190 0.453 0.321 0.099 0.647 1.527 5.954 2.546 3.805 0.921 1.678 0.845 2.519 1.195 0.212 1.597 0.057 0.035 2.353 1.559 0.089 0.446 1.563 0.759 0.433 0.770 1.896 0.762 0.537 0.087 1.000 0.261 0.783 0.507 1.263 0.201 1.121 1.738 0.975 1.134 841 chr17 38218306 38232698 + 0 NA intron (NM_199334, intron 1 of 8) intron (NM_199334, intron 1 of 8) 6434 NM_003250 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor, alpha protein-coding 5.932 3.924 0.357 0.132 0.830 0.697 0.405 0.432 3.330 1.219 0.879 0.425 0.574 0.433 0.275 0.908 0.139 1.215 1.252 1.177 0.742 0.402 1.015 3.056 0.446 0.184 0.180 0.418 0.526 5.379 1.125 1.578 1.380 0.665 0.379 0.334 0.404 1.276 0.744 0.831 0.396 0.227 1083 chr19 53165996 53186108 + 0 NA intron (NM_001348018, intron 1 of 5) AluSq2|SINE|Alu 17782 NM_001348015 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 0.039 0.082 0.067 0.771 1.837 0.022 1.600 0.461 0.217 0.085 0.179 0.832 0.012 1.386 0.233 1.673 0.070 0.055 0.060 0.083 0.724 0.491 0.026 0.083 0.229 0.111 0.058 1.045 0.289 0.057 0.677 0.039 0.040 1.766 0.102 0.064 0.041 1.421 0.194 0.224 0.120 1708 chr6 130063663 130074519 + 0 NA Intergenic Intergenic -37721 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.405 0.848 0.771 1.301 0.208 1.185 0.319 9.725 7.278 2.227 1.078 1.074 1.572 0.203 1.971 0.422 3.927 0.014 0.013 1.811 1.065 0.034 0.194 0.560 0.144 0.165 1.001 0.728 0.142 0.655 0.152 0.232 0.446 0.878 0.212 0.038 0.140 1.130 1.551 0.101 0.019 422 chr12 23622349 23628616 + 0 NA Intergenic L1PA15-16|LINE|L1 112064 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding 0.057 0.109 1.148 1.401 0.031 0.529 0.977 6.280 2.268 4.257 4.153 0.094 0.344 0.046 2.633 0.045 0.717 0.023 0.046 0.024 0.059 0.029 0.013 0.122 0.260 0.039 0.149 0.025 0.129 1.821 0.236 0.740 0.039 0.037 0.038 0.012 0.018 1626 chr6 16667072 16777879 + 0 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) -38894 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 0.513 1.337 0.339 0.505 1.428 0.784 0.785 0.661 4.533 3.687 2.140 0.863 0.596 0.451 0.516 1.010 0.296 2.131 0.157 0.208 1.011 0.638 0.013 3.431 1.094 0.294 0.157 0.320 0.943 0.650 1.017 0.503 0.494 1.804 1.750 0.365 0.332 0.774 0.902 0.641 0.968 1.007 380 chr11 120195480 120209058 + 0 NA 3' UTR (NM_001198670, exon 3 of 3) 3' UTR (NM_001198670, exon 3 of 3) -5349 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 0.937 2.666 0.627 0.500 1.478 4.028 1.759 0.981 2.692 1.899 1.072 0.580 1.274 2.208 2.355 1.872 0.450 2.452 0.681 0.663 1.744 1.250 1.959 1.245 5.366 3.566 1.629 1.031 2.662 1.488 2.742 1.294 2.808 1.625 6.601 1.344 1.954 2.475 2.257 1.447 1.944 1.389 589 chr14 68540959 68586053 + 0 NA intron (NM_001321809, intron 7 of 11) L4|LINE|RTE 273197 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 0.151 0.137 0.060 0.252 0.224 0.417 0.927 0.652 3.296 1.138 2.605 0.655 0.525 0.434 0.183 0.345 0.155 0.421 0.036 1.617 1.304 0.558 0.136 0.114 0.084 0.040 0.030 0.671 0.118 0.379 0.527 0.090 0.461 0.141 0.627 0.108 0.222 0.341 0.838 0.305 0.097 0.046 1329 chr22 29416655 29430594 + 0 NA intron (NR_046851, intron 2 of 2) intron (NR_046851, intron 2 of 2) 3840 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 2.862 0.892 0.009 0.940 1.814 0.340 2.327 1.079 nan 1.294 0.718 0.952 0.754 0.525 0.910 1.343 0.219 2.022 0.158 0.059 0.880 0.921 0.059 0.204 0.495 0.875 0.302 0.538 2.087 2.886 0.344 3.844 1.548 2.974 0.838 0.735 0.439 0.066 2.211 1.330 1.624 1.219 321 chr11 63294386 63305958 + 0 NA Intergenic MER68-int|LTR|ERVL -4101 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 RARRES3 HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3 retinoic acid receptor responder 3 protein-coding 3.597 0.507 4.526 0.573 1.519 0.070 2.171 3.549 1.991 1.019 4.980 1.843 0.700 3.591 1.241 3.143 0.322 2.028 0.078 0.063 3.602 2.996 0.121 0.153 0.113 0.120 0.088 6.810 0.759 3.610 0.099 0.333 1.790 3.887 0.163 0.318 1.628 0.105 0.860 0.923 0.052 0.022 212 chr1 228317152 228321245 + 0 NA Intergenic MSTC|LTR|ERVL-MaLR -8587 NM_001242839 2987 Hs.376933 NM_000858 ENSG00000143774 GUK1 GMK guanylate kinase 1 protein-coding 1.329 0.172 7.694 0.416 0.853 0.149 0.932 0.639 1.186 0.471 2.328 0.250 0.029 0.773 2.034 0.618 0.491 0.159 0.073 0.068 0.182 0.036 0.072 0.200 0.225 0.132 0.038 0.642 0.138 0.410 0.297 0.901 0.607 1.623 0.091 0.924 0.937 0.528 0.116 0.038 0.070 0.038 94 chr1 94368620 94376437 + 0 NA intron (NM_002061, intron 1 of 6) intron (NM_002061, intron 1 of 6) 2626 NM_002061 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 1.352 1.977 0.342 0.435 2.086 2.918 1.480 0.297 1.760 1.236 0.921 0.356 0.363 0.678 7.236 1.144 0.609 1.746 3.398 0.444 1.681 1.925 1.458 2.408 3.259 1.766 0.809 0.572 1.135 2.166 1.450 1.271 3.415 1.904 5.325 0.917 0.679 1.822 0.536 0.630 1.166 0.793 1917 chr8 144910110 144915832 + 0 NA Intergenic HAL1|LINE|L1 -1415 NM_001271096 22827 Hs.521924 NM_014281 ENSG00000179950 PUF60 FIR|RoBPI|SIAHBP1|VRJS poly(U) binding splicing factor 60 protein-coding 4.067 3.056 2.299 1.688 2.956 2.629 3.510 1.789 6.776 4.382 2.297 1.957 1.079 2.035 4.626 2.550 1.902 1.445 1.605 3.010 1.465 1.419 1.805 1.543 3.314 3.179 1.782 1.511 2.641 3.099 4.122 1.467 1.605 7.481 1.721 0.923 2.078 4.580 1.301 0.979 1.324 0.667 122 chr1 151159104 151181097 + 0 NA promoter-TSS (NM_001135636) promoter-TSS (NM_001135636) -920 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 3.393 2.597 2.553 1.034 3.081 3.795 2.157 1.765 17.548 14.849 1.451 1.649 1.346 1.929 2.629 3.275 1.464 2.153 0.760 0.812 2.908 3.168 1.361 3.462 5.492 4.048 1.490 1.157 2.095 2.120 2.401 5.296 6.604 5.501 2.758 1.369 3.675 3.786 3.501 1.575 2.318 1.646 1103 chr2 9935795 9985198 + 0 NA Intergenic (TGGGGG)n|Simple_repeat|Simple_repeat -23075 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 0.600 0.802 0.282 0.476 0.759 0.273 0.789 0.607 6.020 1.615 1.214 0.664 0.246 1.206 2.186 1.781 0.755 0.575 0.125 0.191 0.312 0.175 0.294 0.321 2.021 0.529 0.294 0.885 0.526 0.695 0.540 0.246 1.099 0.995 0.498 0.527 0.946 0.692 0.735 0.601 0.199 0.109 1575 chr5 133836407 133850718 + 0 NA intron (NR_105045, intron 1 of 1) AluSp|SINE|Alu 1319 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 3.780 1.984 0.277 2.790 4.890 1.970 2.282 3.587 15.304 8.020 5.444 3.796 2.136 2.781 2.697 7.702 2.298 2.865 1.398 0.136 3.421 2.923 0.866 1.080 4.566 2.705 1.229 4.439 1.557 4.022 6.998 3.167 3.495 6.215 2.534 2.948 0.840 1.013 1.371 1.832 5.191 3.047 1732 chr7 12678711 12702219 + 0 NA intron (NM_033128, intron 12 of 13) intron (NM_033128, intron 12 of 13) -35987 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 1.263 0.825 0.021 0.234 0.403 0.462 0.368 0.724 0.324 0.151 0.229 0.736 0.678 0.437 0.285 1.145 0.680 3.302 0.073 0.802 0.880 0.407 0.289 0.434 1.515 0.413 0.269 0.163 1.683 0.246 0.218 0.259 0.530 0.706 0.243 0.369 0.495 0.158 0.847 0.434 0.262 0.177 1438 chr3 177281416 177346628 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 154313 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 0.354 0.991 0.516 0.160 0.356 0.058 0.431 0.292 3.933 1.155 4.997 0.971 0.130 0.563 1.389 0.398 0.587 1.734 1.227 0.147 2.319 1.112 0.028 0.220 0.145 0.073 0.045 0.227 0.113 0.427 0.113 0.096 2.613 0.348 0.253 0.550 0.876 0.081 0.435 0.471 0.019 0.022 1878 chr8 102148243 102173347 + 0 NA Intergenic Charlie9|DNA|hAT-Charlie 57165 NM_001267708 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 0.292 1.121 0.044 0.965 0.592 0.138 0.716 1.339 2.506 0.532 0.149 1.184 0.501 1.148 0.495 2.162 0.099 3.182 0.430 0.055 2.062 1.432 0.248 0.581 0.967 0.951 0.407 1.923 2.020 1.222 1.312 0.956 0.696 0.785 0.538 0.721 0.428 0.130 0.956 0.381 0.211 0.199 1854 chr8 59762253 59771859 + 0 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -194652 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1.586 0.966 0.142 1.104 1.821 0.255 2.648 1.933 0.951 0.556 0.555 1.709 0.756 0.875 0.350 2.054 0.558 2.539 0.162 0.014 4.591 4.422 0.093 0.359 1.689 0.640 0.502 2.483 3.125 0.212 0.505 0.647 0.144 1.357 0.018 0.466 0.035 0.199 0.969 1.564 0.012 0.011 975 chr19 3134810 3143755 + 0 NA intron (NM_002068, intron 1 of 6) intron (NM_002068, intron 1 of 6) 3252 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 0.352 1.239 0.028 1.546 3.145 0.078 0.783 1.088 2.171 0.737 0.348 0.468 1.091 3.873 0.940 2.824 0.236 0.398 0.087 0.015 2.318 2.198 0.082 0.460 3.156 1.697 0.623 0.659 3.544 0.337 0.457 0.060 0.977 2.109 0.397 0.643 0.166 0.859 2.859 2.235 0.097 0.125 1406 chr3 141045079 141061387 + 0 NA intron (NM_001080412, intron 1 of 7) (TTCC)n|Simple_repeat|Simple_repeat 10178 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 0.183 0.422 0.019 1.607 2.038 0.264 2.685 1.118 4.035 0.696 0.544 0.871 0.645 1.122 0.141 2.839 0.018 0.929 0.116 0.026 1.690 0.798 0.032 0.740 0.305 0.087 0.091 1.243 1.795 1.599 1.048 2.790 1.016 0.980 4.499 0.291 0.030 0.053 1.751 0.318 0.821 0.963 1899 chr8 128429712 128441981 + 0 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 7989 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 0.153 0.157 0.031 0.103 0.066 0.093 0.060 0.234 0.078 0.128 0.083 0.029 0.086 0.236 0.092 0.023 0.045 0.082 0.085 0.018 0.024 0.040 0.150 0.039 0.028 0.205 0.153 0.378 0.052 0.078 3.886 0.117 0.089 0.185 0.149 0.061 0.540 0.037 0.179 0.017 1230 chr20 30940810 30948433 + 0 NA Intergenic Intergenic -1526 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS additional sex combs like 1, transcriptional regulator protein-coding 5.288 4.902 2.700 1.208 4.293 11.508 4.167 1.634 nan 2.808 3.032 1.208 3.199 2.442 2.178 3.052 3.343 2.498 2.005 3.246 2.981 4.135 4.434 11.980 11.436 9.906 3.459 2.947 6.593 5.129 5.382 3.337 3.634 5.022 14.830 1.263 2.881 6.841 7.601 5.181 9.154 7.793 1857 chr8 67572624 67581342 + 0 NA exon (NM_025054, exon 1 of 3) exon (NM_025054, exon 1 of 3) 2469 NM_025054 80124 Hs.632066 NM_025054 ENSG00000175073 VCPIP1 DUBA3|VCIP135 valosin containing protein interacting protein 1 protein-coding 0.844 2.195 0.517 0.783 2.936 1.393 1.915 0.723 1.753 1.656 1.360 1.072 0.761 1.174 1.156 1.789 0.384 1.336 0.623 0.524 1.207 1.014 0.634 0.756 1.873 1.601 0.917 1.561 2.121 1.522 5.696 0.939 1.155 1.932 2.628 0.923 0.303 1.160 1.306 0.569 0.813 0.648 223 chr1 244995729 245001240 + 0 NA promoter-TSS (NM_001312874) promoter-TSS (NM_001312874) -124 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A COX20, cytochrome c oxidase assembly factor protein-coding 5.292 6.126 3.574 1.446 4.408 7.272 7.359 3.288 9.460 6.642 6.685 2.043 2.087 4.989 5.253 5.202 2.438 4.494 2.267 6.316 6.116 8.160 3.447 13.473 10.423 8.899 3.185 3.803 9.989 6.973 5.331 7.361 8.328 6.840 4.277 3.996 5.770 5.614 6.944 3.670 8.929 8.414 1616 chr6 2763283 2767132 + 0 NA promoter-TSS (NM_130395) promoter-TSS (NM_130395) -459 NM_020135 56897 Hs.236828 NM_020135 ENSG00000124535 WRNIP1 WHIP|bA420G6.2 Werner helicase interacting protein 1 protein-coding 2.793 4.907 2.071 1.383 6.988 3.468 2.664 1.739 7.546 5.222 2.653 1.398 0.886 1.080 2.465 2.572 1.458 3.128 2.588 1.298 3.125 4.418 1.553 2.792 6.422 3.836 1.903 0.609 6.101 4.021 7.910 2.758 2.334 10.834 4.032 0.999 2.281 7.946 5.296 2.428 1.331 0.906 1224 chr20 23329023 23344292 + 0 NA TTS (NR_109884) TTS (NR_109884) 2107 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 0.942 4.211 2.443 0.770 2.001 1.693 1.093 1.138 3.711 3.011 5.602 1.980 1.010 1.641 2.729 1.616 1.892 1.931 1.509 2.446 1.883 2.281 1.552 2.944 2.690 2.218 1.106 1.148 2.634 3.404 2.486 1.986 1.464 3.477 1.862 1.927 2.100 2.384 2.541 1.536 1.552 0.984 701 chr16 11587682 11602860 + 0 NA Intergenic AluJr|SINE|Alu 36155 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 1.049 0.725 0.053 0.449 0.952 0.948 0.698 0.453 7.781 1.490 1.372 1.002 0.360 0.496 0.337 1.284 1.766 1.047 0.277 0.246 0.743 0.463 0.266 1.727 0.918 0.203 0.082 0.358 0.409 2.382 1.539 1.752 1.989 0.507 1.497 0.832 0.994 1.001 0.510 0.621 1.003 1.048 207 chr1 224072793 224079391 + 0 NA Intergenic Intergenic -42418 NM_005426 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 0.603 0.613 0.028 1.061 0.800 0.057 1.707 1.727 1.091 0.239 0.244 0.578 0.217 4.486 0.641 1.613 0.145 0.670 0.045 0.021 1.408 0.833 0.045 0.664 2.379 2.727 1.207 0.939 1.650 0.170 0.926 0.192 0.465 1.186 0.713 0.259 0.234 1.305 0.717 0.180 0.122 0.118 1723 chr7 1703302 1710774 + 0 NA Intergenic CpG -41760 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 0.230 0.189 0.050 0.070 0.025 0.117 0.042 nan 0.333 0.158 0.019 0.236 0.038 0.076 0.358 0.325 0.202 0.994 0.178 0.068 0.522 0.060 0.743 0.367 0.219 0.082 0.442 1.427 7.701 0.095 0.053 0.096 0.473 0.034 0.144 10.219 0.037 0.036 0.116 0.124 546 chr13 113861464 113872159 + 0 NA intron (NM_001008895, intron 2 of 19) L1ME1|LINE|L1 2992 NM_001008895 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 1.066 2.831 1.157 1.563 5.351 1.290 1.190 0.493 4.668 3.606 1.443 0.518 0.613 1.041 3.431 1.134 0.546 0.785 0.665 1.450 1.457 1.917 1.575 2.630 5.823 2.760 1.426 0.767 1.807 2.238 2.227 2.012 1.321 7.880 2.519 1.199 2.130 3.307 1.928 1.633 1.201 0.766 1238 chr20 34327985 34333104 + 0 NA promoter-TSS (NM_001242599) promoter-TSS (NM_001242599) -286 NR_040722 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 8.508 6.689 3.341 1.593 6.178 8.545 6.108 2.471 nan 8.239 9.209 2.685 4.403 3.505 5.839 5.411 5.661 9.334 4.545 5.692 5.671 7.897 2.807 13.733 9.070 6.322 2.420 6.840 10.914 6.061 5.677 5.082 6.665 7.660 8.392 4.655 5.237 10.011 6.539 7.003 4.365 3.030 537 chr13 100606815 100651235 + 0 NA Intergenic Intergenic -4847 NM_033132 85416 Hs.508570 NM_033132 ENSG00000139800 ZIC5 - Zic family member 5 protein-coding 0.197 0.064 0.071 0.282 0.849 0.343 0.139 0.059 0.256 0.200 0.522 0.247 0.248 0.059 0.998 0.839 0.102 0.437 0.101 4.693 0.602 0.618 0.410 0.436 2.612 1.161 0.653 0.048 1.176 1.327 1.809 0.851 0.081 0.644 0.938 0.103 0.061 1.864 0.677 0.568 1.014 0.780 1146 chr2 96808491 96815144 + 0 NA promoter-TSS (NM_004418) promoter-TSS (NM_004418) -638 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 1.228 0.700 0.018 0.171 0.406 0.095 0.918 0.144 2.406 0.602 0.254 0.197 0.231 0.408 1.247 0.739 0.042 3.792 0.074 0.499 0.208 0.055 1.081 2.561 0.290 0.858 0.323 0.206 0.165 0.477 1.155 0.607 1.403 0.686 0.997 0.718 0.247 11.999 0.797 0.344 0.035 0.015 1248 chr20 43311794 43335673 + 0 NA Intergenic MIRb|SINE|MIR -19752 NM_001323369 8839 Hs.592145 NM_003881 ENSG00000064205 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding 0.838 0.430 0.024 0.175 0.334 2.722 0.703 0.301 0.406 0.158 0.138 0.238 0.203 0.320 0.326 0.287 1.035 0.786 0.058 0.040 0.876 0.447 2.482 0.907 4.563 0.184 0.176 0.295 0.235 1.115 0.256 0.321 0.726 0.262 1.764 0.169 1.865 4.908 1.037 0.175 0.219 0.173 1922 chr8 145732372 145736170 + 0 NA promoter-TSS (NM_138431) promoter-TSS (NM_138431) -148 NM_138431 113655 Hs.7678 NM_138431 ENSG00000167700 MFSD3 - major facilitator superfamily domain containing 3 protein-coding 10.444 6.469 2.821 2.809 7.808 6.285 8.614 3.115 14.091 10.635 5.513 5.277 2.143 4.013 10.417 4.952 3.041 2.038 6.210 4.270 2.428 3.459 3.291 4.803 7.955 3.509 2.009 2.412 3.364 6.937 9.659 5.083 5.751 7.367 3.807 3.993 6.595 4.810 2.693 2.388 2.244 1.450 1387 chr3 62569260 62577276 + 0 NA intron (NM_183394, intron 7 of 27) intron (NM_183394, intron 7 of 27) -214078 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 0.197 0.301 0.062 0.667 0.650 0.024 0.236 3.785 0.732 0.184 0.101 1.433 0.765 0.533 0.072 2.487 0.024 0.116 0.013 0.341 0.126 0.080 0.023 0.112 0.156 0.276 9.073 0.051 0.115 0.041 0.620 0.276 0.031 0.051 0.247 1.224 0.366 0.397 1071 chr19 48822724 48838063 + 0 NA intron (NM_001313905, intron 2 of 4) AluSx1|SINE|Alu 1137 NM_001313905 2014 Hs.9999 NM_001425 ENSG00000142227 EMP3 YMP epithelial membrane protein 3 protein-coding 2.736 3.475 0.289 1.005 1.746 3.394 1.884 1.278 nan 1.464 2.295 1.693 1.562 1.424 1.326 1.759 0.767 3.147 1.084 0.679 1.306 1.539 0.785 2.448 4.975 1.930 0.814 0.561 3.398 4.201 5.065 2.587 1.237 2.775 2.827 0.783 0.881 3.414 1.331 2.350 1.746 1.317 93 chr1 94343698 94345982 + 0 NA promoter-TSS (NM_014597) promoter-TSS (NM_014597) -78 NM_014597 30836 Hs.85769 NM_014597 ENSG00000067334 DNTTIP2 ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 deoxynucleotidyltransferase terminal interacting protein 2 protein-coding 6.051 3.820 1.723 2.193 4.799 5.179 5.141 2.112 7.115 5.617 3.825 2.446 2.151 4.423 9.463 3.356 1.999 4.006 16.035 1.522 3.855 4.605 1.744 5.038 6.220 2.809 1.024 3.148 3.107 3.304 3.796 2.017 6.029 8.374 9.727 3.101 1.662 3.844 2.225 1.977 1.959 1.717 83 chr1 78120296 78150182 + 0 NA intron (NM_001308237, intron 1 of 13) AluSx1|SINE|Alu 13104 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 0.821 1.131 2.103 0.361 0.994 0.623 0.759 0.241 1.222 0.762 0.548 0.307 0.229 0.361 1.045 0.658 0.305 0.597 0.347 0.426 0.424 0.426 0.464 0.526 0.990 0.471 0.247 0.539 0.990 0.500 0.791 0.321 0.408 1.199 0.913 0.311 0.624 0.726 0.490 0.396 0.564 0.441 990 chr19 13146483 13173212 + 0 NA intron (NM_001271043, intron 2 of 10) AluSz|SINE|Alu 24452 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 3.056 0.937 0.090 0.171 0.160 0.101 0.523 0.956 nan 0.320 0.140 0.487 1.017 0.098 0.137 1.562 0.810 1.863 0.034 0.187 0.137 0.057 0.550 0.369 2.538 1.020 0.590 0.063 5.836 0.378 1.646 0.056 0.116 0.310 0.077 0.056 0.403 0.400 1.632 2.232 1.610 1.003 472 chr12 66260488 66297716 + 0 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -3155 NM_001292024 100129940 Hs.685856 NM_001292023 ENSG00000197301 LOC100129940 - uncharacterized LOC100129940 protein-coding 0.606 1.025 0.586 0.234 0.311 2.497 0.719 0.753 0.920 0.242 0.362 0.226 0.577 0.316 0.235 0.615 0.013 2.700 0.070 3.107 0.722 0.358 0.026 0.106 0.352 0.193 0.128 0.192 1.938 0.835 2.140 0.642 0.059 0.428 3.624 0.108 0.080 0.211 0.404 0.707 2.776 3.148 1929 chr9 16701265 16728230 + 0 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) 156039 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 0.294 0.112 0.055 0.308 0.694 3.358 0.066 0.016 0.031 0.046 0.194 0.446 0.142 0.328 0.653 0.307 0.213 1.092 0.004 0.308 0.654 0.451 0.377 2.970 0.663 0.678 0.281 0.156 2.288 1.065 0.809 0.586 0.057 0.288 0.516 0.055 0.061 0.633 0.809 1.214 2.293 2.535 1237 chr20 34250997 34254318 + 0 NA intron (NM_001198838, intron 1 of 2) CpG 202 NR_037188 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 8.627 4.581 1.643 2.620 6.561 6.552 4.873 1.589 nan 5.801 7.077 2.505 3.209 3.370 4.778 3.300 5.043 6.687 2.710 4.004 3.480 3.626 3.670 5.377 9.055 5.546 2.847 3.965 6.731 5.098 7.280 3.298 4.130 12.346 6.245 3.134 4.585 11.402 6.537 4.769 3.745 2.043 1017 chr19 36979549 36984328 + 0 NA TTS (NR_036504) TTS (NR_036504) -1134 NM_001300970 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 2.337 2.470 1.546 0.896 3.722 2.112 1.960 0.588 4.357 2.886 1.889 1.557 0.650 0.923 1.376 1.670 1.291 1.582 0.989 1.627 1.987 2.298 1.288 1.464 4.636 4.452 2.114 1.219 2.223 2.862 10.402 1.579 0.921 4.582 0.856 1.100 1.830 2.139 1.672 0.844 6.171 4.358 206 chr1 223058772 223064280 + 0 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 73095 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 0.289 0.200 8.572 0.034 0.115 0.127 0.099 0.268 0.058 0.668 0.133 0.022 0.020 0.263 0.026 0.105 0.309 0.061 0.126 0.013 0.027 0.204 0.117 0.011 0.042 0.042 0.075 0.063 0.039 0.043 0.351 0.091 0.083 0.022 0.270 0.042 0.156 0.055 0.021 0.009 963 chr19 770365 802997 + 0 NA Intergenic AluSg|SINE|Alu -10711 NM_031991 5725 Hs.172550 NM_002819 ENSG00000011304 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 0.814 1.345 0.745 0.290 1.006 2.784 1.300 0.379 1.891 0.909 1.216 0.215 0.307 0.999 1.531 0.966 0.568 0.896 0.569 0.650 1.711 1.805 1.730 2.551 2.705 2.053 1.075 0.493 1.402 4.026 1.623 1.107 1.174 1.533 1.440 0.497 0.428 3.068 1.222 1.252 0.884 0.652 1232 chr20 32250354 32263560 + 0 NA TTS (NM_001024675) TTS (NM_001024675) 2653 NM_001024675 170487 Hs.592151 NM_001024675 ENSG00000182584 ACTL10 C20orf134|dJ63M2.2 actin like 10 protein-coding 2.946 5.121 0.281 0.961 2.399 4.300 1.717 0.558 nan 3.112 2.614 0.962 1.589 0.843 2.835 1.166 1.423 2.365 1.759 0.848 1.414 1.595 1.759 2.352 1.530 1.520 0.876 0.962 1.257 1.988 3.102 1.840 2.358 2.511 1.920 1.235 2.109 5.092 2.089 1.703 0.515 0.256 1736 chr7 14018588 14033060 + 0 NA 5' UTR (NM_001163151, exon 1 of 9) 5' UTR (NM_001163151, exon 1 of 9) 315 NM_001163152 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 1.917 1.682 0.265 0.278 0.845 2.028 3.120 0.840 3.115 2.004 6.013 0.803 3.877 0.577 0.357 1.482 0.878 2.618 1.100 2.377 2.996 2.510 0.441 5.114 2.360 0.736 0.377 0.334 2.568 0.849 1.500 1.979 0.166 1.404 3.879 1.183 0.186 1.626 1.263 2.990 0.565 0.725 1722 chr7 1603157 1612466 + 0 NA intron (NM_001134340, intron 2 of 2) intron (NM_001134340, intron 2 of 2) 1818 NM_032302 84262 Hs.446311 NM_032302 ENSG00000157778 PSMG3 C7orf48|PAC3 proteasome assembly chaperone 3 protein-coding 4.512 3.927 1.566 1.039 3.257 2.303 6.890 1.674 11.250 5.843 8.762 2.701 2.607 2.813 2.744 3.350 1.173 7.144 0.649 0.879 4.780 6.115 1.260 10.524 2.932 2.181 0.914 2.647 2.557 4.230 3.565 1.217 3.318 6.266 5.477 3.563 3.871 4.109 3.837 3.090 1.163 0.807 487 chr12 107447575 107453578 + 0 NA intron (NM_004075, intron 1 of 12) L1MEg|LINE|L1 37059 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 0.121 0.039 8.425 0.096 0.210 0.011 0.057 0.017 1.339 0.505 0.652 0.048 0.019 0.036 0.149 0.095 0.718 0.194 0.050 0.023 0.184 0.049 0.218 1.032 0.108 0.010 0.064 0.064 0.116 0.141 0.118 0.066 0.769 0.428 0.046 0.101 2.428 0.019 0.172 0.025 0.019 0.009 563 chr14 37113452 37135096 + 0 NA Intergenic Intergenic -2499 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 0.547 0.065 1.328 0.403 1.186 0.047 1.638 0.508 9.584 4.549 0.988 1.032 0.468 0.851 0.093 1.028 0.261 0.656 1.207 0.264 1.109 0.811 0.270 0.390 0.179 0.067 0.040 0.613 0.267 0.508 0.213 0.821 0.659 1.074 1.590 0.428 0.365 1.412 0.363 0.087 0.032 0.024 1967 chr9 123629771 123641531 + 0 NA intron (NM_001286843, intron 3 of 4) intron (NM_001286843, intron 3 of 4) 3955 NM_001286843 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding 1.755 2.110 0.158 2.045 3.937 1.830 5.859 1.117 7.961 3.412 2.590 3.163 1.419 1.328 1.554 3.580 0.626 1.742 1.474 1.205 2.467 3.059 2.311 2.764 5.365 3.582 1.269 2.268 3.473 4.217 6.573 1.741 2.271 4.983 5.093 0.800 0.640 4.289 2.620 2.101 4.971 3.570 1653 chr6 31160828 31173091 + 0 NA intron (NR_026791, intron 1 of 1) intron (NR_026791, intron 1 of 1) 1422 NR_026791 253018 Hs.659818 NR_026791 ENSG00000206344 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA 3.507 2.022 1.351 0.991 3.038 4.224 2.310 0.973 3.320 1.469 2.427 1.385 0.684 1.585 1.372 3.844 0.560 1.293 1.895 0.713 1.726 1.775 0.412 1.815 3.327 2.273 0.820 1.696 3.348 1.207 3.755 1.637 1.146 5.700 3.239 0.579 1.140 3.318 1.435 1.668 0.596 0.407 1142 chr2 85828683 85848011 + 0 NA promoter-TSS (NM_001256727) promoter-TSS (NM_001256727) 832 NM_001013649 388969 Hs.516159 NM_001013649 ENSG00000168887 C2orf68 HCRCN81 chromosome 2 open reading frame 68 protein-coding 1.106 1.685 1.565 0.582 1.738 1.280 0.956 0.288 2.561 1.906 3.965 0.564 0.620 0.694 2.823 1.225 0.721 1.731 0.477 0.602 0.917 0.767 0.879 0.978 1.194 1.311 0.783 0.476 0.898 1.749 1.936 1.162 1.080 2.106 1.626 0.704 1.094 2.312 0.940 0.778 0.492 0.290 1296 chr21 36235091 36265560 + 0 NA intron (NM_001001890, intron 2 of 5) intron (NM_001001890, intron 2 of 5) 10662 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 2.766 1.775 3.490 1.008 2.825 1.799 3.267 2.329 7.359 4.649 4.836 1.609 1.886 2.512 2.773 3.546 1.609 1.472 0.102 0.036 2.472 2.713 1.011 1.304 3.829 1.518 0.659 2.020 2.649 1.189 2.566 0.912 2.339 3.648 3.861 1.305 2.402 1.976 1.556 2.357 1.671 1.333 811 chr17 27223412 27230069 + 0 NA intron (NM_144683, intron 4 of 4) AluSx|SINE|Alu -1986 NM_001330170 2319 Hs.514038 NM_004475 ENSG00000132589 FLOT2 ECS-1|ECS1|ESA|ESA1|M17S1 flotillin 2 protein-coding 2.118 3.021 0.306 0.708 2.667 1.099 1.257 0.742 5.658 3.311 2.159 0.791 0.744 1.309 1.707 1.508 1.396 0.576 0.784 0.980 1.442 1.149 1.984 1.745 4.475 4.128 2.450 0.298 0.937 3.391 2.208 2.093 2.261 2.827 1.760 1.843 1.513 3.865 0.922 0.806 0.807 0.354 1964 chr9 118914816 118926271 + 0 NA intron (NM_002581, intron 1 of 21) intron (NM_002581, intron 1 of 21) 4472 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 0.132 1.519 0.021 0.199 0.350 2.108 0.350 0.055 nan 0.133 0.110 0.124 0.057 0.038 0.327 0.049 0.158 2.045 0.018 0.185 0.076 0.076 2.504 1.552 0.282 0.183 0.040 0.841 5.262 0.348 2.799 3.488 0.137 0.016 0.282 0.058 1.015 0.241 0.368 0.669 0.576 1180 chr2 206948807 206952028 + 0 NA intron (NM_017759, intron 1 of 10) CpG 489 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 7.419 8.072 4.056 2.864 8.390 11.922 8.927 2.514 16.318 16.810 9.106 2.967 4.235 3.936 5.307 7.378 2.602 3.831 4.698 9.192 5.571 10.142 5.733 10.661 9.553 10.827 3.797 5.792 5.471 10.661 8.431 4.078 6.052 6.905 8.513 3.073 7.393 10.082 6.053 7.174 5.729 3.446 1784 chr7 75240214 75257376 + 0 NA intron (NM_005338, intron 1 of 30) AluSz|SINE|Alu -91342 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 0.096 1.200 0.079 0.110 0.180 0.080 0.871 0.178 0.577 0.213 7.317 0.034 0.614 0.235 0.432 0.609 0.072 0.248 0.053 0.081 0.496 0.310 0.090 0.396 0.220 0.081 0.027 0.237 0.287 0.332 0.203 0.051 0.176 0.349 0.567 0.282 0.082 0.176 0.731 0.258 0.037 0.012 984 chr19 8418519 8436186 + 0 NA Intergenic Intergenic -1659 NM_139314 51129 Hs.9613 NM_016109 ENSG00000167772 ANGPTL4 ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158 angiopoietin like 4 protein-coding 0.285 1.688 0.081 0.495 0.883 3.442 0.903 0.809 2.291 0.679 0.536 0.347 0.712 0.889 0.364 1.497 0.616 1.447 0.059 0.072 1.105 0.765 0.855 0.945 0.960 0.642 0.292 0.418 3.489 1.685 3.215 1.372 1.509 1.612 3.300 0.338 0.716 1.968 0.745 0.550 0.838 0.715 203 chr1 211904783 211917197 + 0 NA Intergenic MER45A|DNA|hAT-Tip100 -62018 NM_002497 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 0.635 0.335 0.080 0.444 0.528 1.449 0.523 0.415 2.754 1.004 1.743 1.557 0.380 0.575 0.636 1.545 0.501 1.722 0.122 1.513 1.069 0.083 3.582 1.032 0.131 0.081 0.774 0.258 2.054 0.425 3.110 1.566 0.720 1.290 0.622 1.021 1.059 0.762 0.284 0.418 0.373 5 chr1 6257129 6267911 + 0 NA Intergenic AluJo|SINE|Alu -2841 NM_000983 6146 Hs.515329 NM_000983 ENSG00000116251 RPL22 EAP|HBP15|HBP15/L22|L22 ribosomal protein L22 protein-coding 2.995 2.021 1.441 1.038 2.880 4.188 2.463 0.804 nan 2.809 1.816 1.885 1.014 2.023 2.441 2.382 1.984 2.473 2.092 1.224 1.492 1.810 2.385 3.395 3.269 3.011 1.514 0.835 1.988 3.072 2.693 1.972 1.765 2.238 4.752 1.601 3.038 5.661 2.056 1.230 1.190 1.125 416 chr12 14921495 14929584 + 0 NA Intergenic AluY|SINE|Alu -1474 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 6.147 3.645 1.836 1.570 3.899 2.284 4.391 2.023 7.697 4.698 3.739 1.538 1.952 2.832 4.758 2.764 2.037 4.368 1.953 2.381 2.805 2.753 0.930 2.630 3.872 3.134 1.246 2.584 6.266 5.193 7.305 2.705 2.054 4.251 4.223 1.758 1.636 8.972 2.595 0.741 2.029 1.527 915 chr17 77408790 77435677 + 0 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 89997 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding protein, fox-1 homolog 3 protein-coding 0.032 0.095 0.023 0.090 0.064 0.079 0.010 0.526 0.173 0.066 0.043 0.016 0.053 0.055 0.007 0.058 0.042 0.016 0.044 0.029 0.039 0.237 0.122 0.022 0.026 0.054 0.146 3.201 0.050 0.012 0.251 0.099 0.014 0.296 0.077 0.145 0.035 0.017 0.034 0.007 1481 chr4 77114663 77141308 + 0 NA intron (NM_005506, intron 1 of 11) intron (NM_005506, intron 1 of 11) 7067 NM_001204255 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 0.656 1.320 0.117 0.492 1.168 0.363 0.919 0.687 4.988 2.212 1.424 0.615 0.390 1.068 0.773 1.254 0.198 1.054 1.045 0.141 0.945 0.599 0.445 0.444 0.784 0.348 0.214 0.785 1.267 0.567 0.577 0.784 0.817 1.287 0.640 0.444 0.491 0.575 0.549 0.312 0.073 0.046 508 chr12 125049031 125078131 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -11571 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.762 0.435 0.291 0.613 0.952 0.353 0.426 0.297 4.012 1.360 0.714 0.594 0.288 0.319 0.738 1.140 0.505 0.698 0.440 0.599 0.474 0.395 0.501 0.633 0.684 0.583 0.374 0.293 1.545 1.642 1.617 0.253 0.473 0.882 0.483 1.089 0.509 1.593 0.220 0.385 0.315 0.216 10 chr1 7322214 7328536 + 0 NA intron (NM_015215, intron 5 of 22) AluSx1|SINE|Alu 479991 NM_015215 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 3.606 0.415 0.136 0.030 0.330 0.302 0.101 5.919 0.575 0.122 0.023 1.006 1.700 0.030 2.835 0.077 1.851 2.042 2.333 2.213 0.338 2.477 1.966 0.496 0.234 1.609 4.444 3.100 2.537 3.274 1.777 0.056 1.344 4.116 1.612 2.071 1.505 1.333 0.583 0.601 1121 chr2 39346070 39352953 + 0 NA Intergenic AluSq|SINE|Alu -1907 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 3.406 3.886 1.546 1.443 4.088 4.181 3.895 1.347 nan 6.135 3.871 2.034 1.940 1.933 4.734 3.226 1.673 1.904 1.786 2.483 2.815 2.604 2.344 3.111 5.766 3.121 1.727 1.969 2.855 6.710 5.464 4.600 3.613 6.288 5.477 1.813 3.622 7.949 3.519 2.737 1.654 0.896 101 chr1 116209850 116222161 + 0 NA intron (NM_138959, intron 4 of 7) MLT1C|LTR|ERVL-MaLR 30755 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 0.408 0.795 0.050 0.401 0.843 0.328 1.031 1.177 2.390 0.854 0.266 2.670 1.866 0.554 2.559 1.952 0.332 1.904 1.275 0.021 1.276 1.112 0.091 2.510 0.864 0.445 0.101 0.801 0.425 0.404 0.345 0.275 2.962 1.229 1.851 1.197 0.769 0.342 1.607 2.935 0.037 0.017 239 chr10 32214687 32237646 + 0 NA Intergenic MER101-int|LTR|ERV1 -8362 NM_018287 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 2.197 2.457 0.705 0.932 2.599 4.769 2.376 1.371 3.367 1.827 1.897 1.029 1.734 1.362 2.140 2.687 1.400 2.323 0.100 1.336 2.085 1.649 1.078 3.995 2.213 1.865 0.908 3.012 2.417 3.951 1.944 1.817 2.935 3.007 3.189 1.653 2.083 2.068 1.438 1.300 4.007 4.103 1555 chr5 59470147 59508473 + 0 NA intron (NM_001165899, intron 1 of 16) AluYf4|SINE|Alu -294230 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA 0.078 0.176 0.005 0.034 0.113 0.038 0.130 0.017 0.124 0.095 0.083 0.042 0.065 0.051 0.113 0.260 0.015 0.593 0.021 0.007 0.663 0.202 0.015 9.305 0.133 0.020 0.030 0.036 0.157 0.642 0.033 0.249 0.134 0.046 0.038 0.257 0.039 0.020 0.039 0.022 0.018 0.008 22 chr1 16463473 16518725 + 0 NA Intergenic Intergenic -8495 NM_001329090 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 4.922 3.282 1.693 1.536 3.259 3.964 4.322 2.163 7.757 4.575 3.811 2.882 1.697 2.625 3.033 3.867 1.994 1.835 0.174 0.347 2.352 2.374 2.338 1.588 5.970 4.548 1.787 1.394 3.934 3.252 5.298 0.829 1.988 6.125 4.742 1.969 2.318 5.361 2.036 3.280 2.623 1.929 1425 chr3 169062087 169085262 + 0 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -91981 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 2.711 0.087 0.020 0.066 0.133 0.030 0.182 0.480 0.212 0.113 0.704 0.214 0.056 0.290 0.407 0.354 0.008 1.262 0.043 0.012 0.042 0.019 0.022 0.103 0.060 0.060 0.051 0.222 0.338 0.053 0.081 0.105 0.111 0.101 0.159 0.263 0.050 0.015 0.103 0.118 0.015 0.007 1394 chr3 101404031 101412673 + 0 NA Intergenic Intergenic -2789 NM_000986 6152 Hs.477028 NM_000986 ENSG00000114391 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 1.110 0.981 4.340 0.504 1.159 1.016 3.575 2.171 4.750 3.970 3.035 0.695 0.962 2.561 2.945 3.886 0.585 1.870 0.854 0.465 1.438 1.228 0.661 1.058 2.164 1.540 0.755 1.885 1.691 1.243 1.633 1.515 1.329 3.061 4.003 0.461 0.982 1.723 2.242 0.826 0.753 0.585 1170 chr2 172958747 172972082 + 0 NA exon (NM_004405, exon 3 of 3) exon (NM_004405, exon 3 of 3) 2064 NM_004405 1746 Hs.419 NM_004405 ENSG00000115844 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 0.411 2.570 0.652 0.740 0.635 1.665 0.769 0.301 1.110 1.270 0.648 0.639 1.347 0.375 2.360 1.582 2.083 2.568 0.293 3.821 1.030 0.646 1.422 2.773 9.179 2.097 1.212 0.269 2.892 1.823 5.112 0.704 0.806 0.764 1.323 0.166 0.507 7.154 0.846 1.005 1.779 1.057 130 chr1 151649520 151655924 + 0 NA intron (NM_030918, intron 7 of 11) AluSx1|SINE|Alu 36070 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding 1.718 0.717 0.078 1.212 2.412 0.396 1.951 1.731 30.357 26.071 1.365 2.013 0.809 2.228 0.604 3.580 0.241 2.078 0.093 0.044 2.168 1.587 0.207 0.092 1.337 1.083 0.485 1.604 0.466 0.140 0.278 1.749 5.729 1.831 0.580 1.936 1.884 0.499 2.167 0.333 0.117 0.088 778 chr16 89982777 89993329 + 0 NA promoter-TSS (NM_001197181) promoter-TSS (NM_001197181) -364 NM_001197181 10381 Hs.511743 NM_006086 ENSG00000258947 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin beta 3 class III protein-coding 1.972 4.000 0.047 1.819 4.686 6.502 4.250 0.709 4.808 2.652 3.049 1.941 2.216 2.025 0.512 2.340 1.119 2.643 2.985 1.299 3.534 4.480 1.954 4.932 6.293 6.437 2.529 2.904 3.029 5.562 10.155 1.418 2.802 4.882 5.193 0.828 0.331 5.752 3.453 3.151 3.253 2.344 829 chr17 36056556 36079291 + 0 NA intron (NM_001304286, intron 5 of 6) MamSINE1|SINE|tRNA 37146 NM_001304286 6928 Hs.191144 NM_000458 ENSG00000275410 HNF1B FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HNF1 homeobox B protein-coding 5.236 0.165 0.052 0.369 0.289 0.489 0.387 1.124 0.791 0.399 0.849 0.382 0.345 1.148 0.182 0.417 0.017 0.115 0.592 0.043 0.760 0.442 0.058 0.859 0.178 0.077 0.058 0.369 0.296 2.339 0.044 3.958 0.822 0.567 0.076 0.344 0.208 0.129 0.214 0.295 0.162 0.101 1809 chr7 113721790 113729178 + 0 NA promoter-TSS (NR_033766) promoter-TSS (NR_033766) -881 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 2.352 0.369 0.050 0.232 0.577 0.017 5.625 0.028 4.888 3.403 2.488 0.713 0.497 1.426 0.334 0.853 4.299 1.860 1.782 0.719 0.529 0.487 0.052 0.735 0.197 0.148 1.695 1.256 0.460 2.047 4.982 3.235 0.330 0.345 1.654 4.268 1.567 0.011 0.061 0.016 0.007 1620 chr6 12007289 12014371 + 0 NA Intergenic Intergenic -1894 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 3.497 5.231 3.641 0.990 3.135 4.222 4.074 2.214 3.615 3.764 8.219 1.218 1.084 1.825 8.058 2.114 1.923 3.334 1.867 1.661 3.474 4.866 1.549 2.713 8.526 4.946 2.193 1.142 3.153 4.379 6.722 3.061 5.231 7.924 5.105 1.500 3.521 7.170 3.463 2.978 1.409 0.633 32 chr1 26448485 26455281 + 0 NA 3' UTR (NM_001243533, exon 4 of 4) 3' UTR (NM_001243533, exon 4 of 4) 13615 NM_152835 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 2.884 1.288 1.291 1.764 2.855 0.064 5.618 1.936 8.583 1.827 4.419 2.697 1.127 2.375 2.402 3.289 1.819 2.651 0.059 0.041 2.485 2.416 0.366 2.989 0.145 0.188 0.127 2.372 4.645 0.357 0.180 1.197 3.128 2.584 4.383 1.007 2.308 0.077 2.322 1.854 0.087 0.023 1435 chr3 177160678 177182640 + 0 NA intron (NR_047568, intron 1 of 3) AluSz|SINE|Alu 11950 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 0.468 1.449 0.248 0.522 0.953 0.128 2.329 0.915 2.493 0.638 3.287 0.852 0.101 1.128 1.843 1.082 0.741 0.965 0.119 0.737 2.745 1.318 0.048 0.149 0.708 0.099 0.049 0.673 0.263 0.185 0.279 0.119 1.545 0.440 0.482 0.586 0.413 0.146 0.526 0.183 1.002 1.317 1516 chr5 2738298 2759246 + 0 NA exon (NM_001134222, exon 3 of 5) exon (NM_001134222, exon 3 of 5) 2997 NM_033267 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.057 0.085 0.407 0.018 0.091 0.018 10.504 0.430 1.294 0.651 1.419 0.035 1.197 2.984 0.111 1.417 1.462 0.061 3.716 0.529 1.632 1.474 0.007 0.866 0.081 0.025 0.021 0.074 0.223 0.139 0.029 0.023 0.109 0.102 0.022 0.017 1.673 0.545 0.102 1.284 0.014 0.007 1700 chr6 111802682 111806562 + 0 NA promoter-TSS (NR_034111) promoter-TSS (NR_034111) -53 NR_034111 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 5.520 5.206 4.264 1.530 5.079 6.135 6.101 1.274 13.699 9.951 7.166 1.337 1.949 3.179 6.448 3.585 1.249 4.828 2.063 8.808 3.375 5.616 2.584 5.940 8.356 8.158 3.708 3.931 3.395 6.907 11.689 1.982 3.251 9.372 5.719 3.323 2.672 7.023 4.645 3.626 5.693 4.133 1558 chr5 71736516 71770453 + 0 NA intron (NM_152625, intron 2 of 4) intron (NM_152625, intron 2 of 4) 49765 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 0.070 0.955 0.025 0.119 0.241 0.134 0.141 0.589 0.541 0.102 0.136 0.353 0.310 0.437 0.874 0.598 0.489 2.677 0.026 0.020 2.253 1.391 0.091 0.220 0.926 0.385 0.240 0.222 1.055 0.322 0.071 0.143 0.163 0.125 0.125 0.158 0.168 0.079 1.016 0.502 0.071 0.036 1299 chr21 36584760 36607572 + 0 NA Intergenic MIRc|SINE|MIR -174571 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.739 0.095 2.137 1.162 1.705 0.143 1.100 2.018 1.776 0.869 1.080 1.726 0.536 1.718 2.479 3.358 1.009 0.568 0.040 1.279 0.796 0.243 0.125 0.687 0.087 0.075 1.231 0.575 0.039 0.875 0.456 0.865 2.351 1.433 0.647 0.806 0.105 1.332 0.127 0.641 0.635 621 chr14 105928927 105945669 + 0 NA TTS (NM_001203258) TTS (NM_001203258) -1977 NM_001270837 1397 Hs.534309 NM_001312 ENSG00000182809 CRIP2 CRIP|CRP2|ESP1 cysteine rich protein 2 protein-coding 1.824 1.202 0.185 0.283 1.122 0.227 0.798 0.108 20.117 13.656 15.802 4.732 0.950 0.261 0.569 2.192 2.303 0.115 0.771 0.653 0.720 0.444 0.666 0.452 0.320 0.151 0.121 1.848 0.184 1.498 4.734 0.094 0.454 2.156 0.476 0.212 6.500 0.722 0.349 0.247 0.204 0.106 516 chr13 27551314 27559846 + 0 NA Intergenic Intergenic -144090 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 0.092 0.737 5.512 0.401 0.260 0.038 0.281 0.371 0.218 0.099 0.198 0.069 2.235 0.860 0.246 0.869 0.090 1.082 0.535 0.991 0.856 0.856 5.148 2.441 0.412 0.155 0.278 1.803 3.055 0.206 1.245 0.733 0.142 4.472 0.199 2.254 2.282 1.499 0.426 0.263 0.064 1212 chr20 3141975 3155422 + 0 NA intron (NM_001282533, intron 1 of 5) CpG 5540 NM_001282533 9762 Hs.90232 NM_014731 ENSG00000088899 LZTS3 PROSAPIP1 leucine zipper tumor suppressor family member 3 protein-coding 0.249 0.669 0.616 0.097 0.356 0.193 0.249 0.322 1.700 0.657 0.726 0.185 0.087 0.574 0.342 0.259 0.210 0.366 3.497 0.355 0.208 0.102 0.313 0.261 0.906 0.636 0.416 0.194 0.216 1.090 0.758 0.921 1.004 0.227 0.384 0.309 0.375 0.809 0.304 0.112 0.289 0.125 1603 chr5 172283887 172300886 + 0 NA intron (NM_001031711, intron 1 of 9) intron (NM_001031711, intron 1 of 9) 31163 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 0.960 1.390 0.011 0.580 1.281 1.644 4.861 2.040 2.187 0.439 0.205 1.273 1.090 3.212 0.726 2.408 0.285 0.327 0.065 0.065 2.135 1.376 0.618 0.165 2.281 2.681 1.279 1.100 0.972 1.095 0.620 0.497 0.346 1.842 5.863 0.533 0.354 0.278 0.950 0.506 4.883 3.742 165 chr1 155656079 155660591 + 0 NA promoter-TSS (NM_001199851) promoter-TSS (NM_001199851) 112 NM_001198904 55249 Hs.584927 NM_018253 ENSG00000163374 YY1AP1 HCCA1|HCCA2|YAP|YY1AP YY1 associated protein 1 protein-coding 5.802 5.249 3.669 3.483 7.394 7.635 4.441 3.206 10.210 6.467 6.046 4.477 5.079 5.543 4.052 4.563 2.569 3.864 4.472 4.813 4.596 6.408 4.215 7.486 7.668 7.083 3.166 2.982 4.116 5.820 5.899 2.406 3.739 9.928 6.629 4.082 5.003 13.307 6.205 3.046 3.831 2.166 1509 chr5 261355 275593 + 0 NA Intergenic AluY|SINE|Alu 3165 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 1.064 1.607 0.283 0.801 3.352 1.400 2.594 0.484 3.560 2.304 2.405 0.549 0.598 0.606 2.923 2.127 1.426 1.426 0.528 0.961 1.600 1.592 0.946 2.206 2.104 2.862 1.529 0.823 1.256 1.046 1.391 1.045 4.407 7.275 1.142 0.996 1.255 0.680 1.406 0.364 0.570 0.298 1388 chr3 62583948 62598796 + 0 NA intron (NM_183394, intron 6 of 27) MIR|SINE|MIR -232182 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 0.944 0.624 0.130 0.697 1.638 0.330 3.470 5.187 2.409 1.336 1.416 1.457 1.059 2.437 0.216 4.440 0.032 0.180 0.040 0.019 1.848 1.324 0.025 0.113 0.093 1.265 0.724 1.911 7.971 0.038 0.209 0.016 0.166 2.271 0.835 0.425 0.022 0.032 1.206 1.122 0.334 0.242 377 chr11 118489355 118496387 + 0 NA intron (NM_001144758, intron 4 of 22) intron (NM_001144758, intron 4 of 22) 14565 NM_001144759 23187 Hs.504062 NM_015157 ENSG00000019144 PHLDB1 LL5A pleckstrin homology like domain family B member 1 protein-coding 2.307 4.830 0.009 1.082 2.619 2.564 4.338 2.750 4.993 1.965 1.559 3.582 1.896 2.868 5.128 3.454 1.524 3.542 0.598 0.138 1.993 1.602 1.522 1.108 8.926 1.671 0.944 2.647 0.937 0.255 2.175 0.352 1.747 3.495 2.744 0.990 0.252 1.258 2.623 3.844 2.436 1.698 970 chr19 1437175 1447506 + 0 NA Intergenic Intergenic 3916 NM_001308226 6209 Hs.406683 NM_001018 ENSG00000115268 RPS15 RIG|S15 ribosomal protein S15 protein-coding 0.970 1.211 0.385 0.585 1.812 1.672 1.359 0.569 3.008 1.338 1.121 0.510 0.537 1.679 1.541 2.069 0.545 0.763 0.752 1.259 0.934 0.947 1.789 1.971 3.137 2.122 1.305 0.496 1.065 1.781 4.000 0.855 0.820 1.941 2.053 0.985 1.604 7.698 2.172 0.699 1.380 0.825 228 chr10 3814367 3830677 + 0 NA intron (NR_027653, intron 2 of 3) intron (NR_027653, intron 2 of 3) 4951 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 4.070 2.466 0.887 0.813 2.486 4.651 4.333 1.726 1.960 1.298 3.045 1.222 2.468 1.811 1.470 2.374 1.215 3.160 0.374 1.902 2.203 2.872 1.631 1.761 3.710 3.946 1.779 0.710 4.771 2.377 2.970 1.961 1.597 3.975 3.025 1.288 2.324 9.075 3.367 4.494 5.265 5.412 1460 chr4 1282203 1285596 + 0 NA intron (NM_005882, intron 1 of 7) CpG 260 NM_001297431 10296 Hs.139896 NM_005882 ENSG00000090316 MAEA EMLP|EMP|GID9|HLC-10|PIG5 macrophage erythroblast attacher protein-coding 4.276 4.689 0.834 2.242 7.372 1.471 3.727 1.364 5.109 2.989 2.252 2.450 1.359 1.985 4.552 2.265 1.591 1.334 1.215 0.816 1.972 1.726 2.478 2.209 7.372 4.812 2.225 1.593 2.309 2.807 8.451 4.324 2.544 13.386 4.594 2.384 1.881 5.255 1.675 1.864 1.375 1.111 776 chr16 89881561 89896281 + 0 NA Intergenic Intergenic -5856 NM_000135 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH Fanconi anemia complementation group A protein-coding 1.246 1.691 0.109 0.482 2.292 1.311 1.216 0.178 2.293 0.962 1.424 0.452 0.498 0.379 1.277 0.595 0.408 0.858 1.659 0.899 1.158 1.012 1.703 2.406 2.481 2.495 1.385 0.494 0.543 1.955 3.448 1.715 2.345 5.123 1.695 0.649 1.850 2.601 0.757 0.706 0.771 0.371 927 chr17 79667174 79671896 + 0 NA promoter-TSS (NM_002949) promoter-TSS (NM_002949) -865 NM_002949 6182 Hs.109059 NM_002949 ENSG00000262814 MRPL12 5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12 mitochondrial ribosomal protein L12 protein-coding 3.616 5.423 0.944 1.685 5.110 11.025 3.620 1.026 8.627 6.017 3.047 4.156 3.173 3.087 2.475 4.143 1.494 3.192 1.689 1.936 2.193 2.282 2.566 5.436 6.053 3.188 1.836 1.299 3.019 4.855 6.875 4.202 4.368 8.175 3.551 3.335 2.543 7.016 1.680 3.466 2.341 1.254 1649 chr6 30843844 30855000 + 0 NA promoter-TSS (NM_001297652).6 promoter-TSS (NM_001297652).6 -968 NM_001297652 780 Hs.631988 NM_001954 ENSG00000204580 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 3.761 2.271 2.092 1.093 2.965 1.772 1.966 1.538 5.519 3.876 4.033 1.561 0.613 1.204 3.265 2.956 1.859 1.822 0.945 0.273 1.688 1.515 0.866 3.727 3.984 0.617 0.470 1.063 0.955 3.572 3.393 2.809 2.219 2.876 0.505 1.361 3.015 4.566 1.285 1.476 0.729 0.450 1720 chr7 1541672 1586702 + 0 NA Intergenic AluSx1|SINE|Alu -6181 NM_002360 7975 Hs.520612 NM_002360 ENSG00000198517 MAFK NFE2U|P18 MAF bZIP transcription factor K protein-coding 2.987 1.831 0.533 0.442 1.042 3.993 2.366 0.562 nan 2.227 2.812 0.695 0.620 0.696 1.068 1.164 1.056 4.176 0.713 0.203 1.518 1.271 1.608 6.140 3.511 1.053 0.518 0.938 0.832 5.984 2.459 2.375 3.661 4.052 3.092 1.560 3.745 5.653 1.052 0.988 0.547 0.272 1269 chr20 52256437 52309799 + 0 NA Intergenic AluJb|SINE|Alu 58225 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 0.822 0.706 0.960 0.597 0.897 0.267 1.050 0.726 2.467 0.816 3.290 0.356 0.669 1.282 1.984 0.931 1.503 0.687 0.077 1.610 1.385 1.030 0.470 0.927 0.876 0.165 0.153 0.858 2.325 1.751 1.410 0.568 1.052 0.607 0.596 0.489 1.436 3.977 0.486 0.557 0.217 0.154 1811 chr7 137615174 137653733 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) -3641 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 0.666 0.432 0.789 0.964 1.141 0.078 0.387 0.648 5.652 1.702 3.081 0.377 0.105 0.704 0.739 0.518 0.293 0.428 0.091 0.029 0.675 0.362 0.092 0.675 0.159 0.115 0.080 0.874 0.182 0.435 0.176 1.464 1.706 1.445 0.179 0.448 2.013 0.123 0.359 0.074 0.028 0.015 1430 chr3 172276917 172283611 + 0 NA Intergenic AluSq|SINE|Alu -38967 NR_033994 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 6.181 0.621 0.055 0.373 1.075 6.794 1.351 0.754 1.499 0.447 7.326 1.420 0.351 1.665 2.537 1.650 1.141 0.761 0.059 3.437 2.790 2.067 0.743 0.797 0.342 0.198 0.386 1.379 0.578 0.170 3.140 5.581 0.438 0.177 1.045 4.409 0.283 1.074 0.479 0.069 0.076 788 chr17 7116987 7125458 + 0 NA promoter-TSS (NM_001128827) promoter-TSS (NM_001128827) -274 NM_001128827 1742 Hs.463928 NM_001365 ENSG00000132535 DLG4 PSD95|SAP-90|SAP90 discs large MAGUK scaffold protein 4 protein-coding 0.916 2.564 0.773 0.785 2.700 4.089 1.015 0.288 3.259 1.651 1.996 0.673 0.963 1.042 1.406 1.264 1.005 1.675 0.717 1.585 0.475 0.373 1.603 2.173 2.634 1.353 0.839 0.940 1.316 4.389 5.084 1.346 0.956 3.510 2.950 1.053 1.502 8.007 2.008 1.840 1.135 0.695 1525 chr5 32442821 32445714 + 0 NA intron (NR_144318, intron 2 of 18) CpG 600 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 5.319 5.380 2.016 3.002 10.966 6.551 7.060 2.549 14.553 11.949 7.009 1.412 2.206 1.774 5.621 4.432 4.549 4.341 2.466 3.542 3.491 5.739 3.568 5.486 5.438 9.064 4.329 2.392 1.373 6.668 9.364 4.706 2.925 12.955 3.420 1.846 4.370 10.173 3.867 2.305 3.324 1.387 1255 chr20 47892402 47899066 + 0 NA promoter-TSS (NM_021035) promoter-TSS (NM_021035) 252 NR_002433 26765 NR_002433 ENSG00000209042 SNORD12C E2|E2-1|E3|RNU106|SNORD106|U106 small nucleolar RNA, C/D box 12C snoRNA 6.561 5.291 2.521 1.171 4.197 3.782 4.406 1.519 5.791 4.050 6.611 2.431 2.152 4.910 5.892 3.274 3.430 3.630 2.137 3.156 2.107 2.160 2.711 7.736 9.623 6.304 2.900 2.589 4.607 4.507 4.759 2.314 4.721 3.294 3.750 3.490 3.650 8.253 4.281 5.091 4.280 3.001 1335 chr22 36745880 36866806 + 0 NA Intergenic CpG -22231 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 1.701 1.906 0.777 1.118 2.149 1.323 2.277 1.044 5.946 2.981 1.326 1.415 0.743 0.807 1.927 2.075 0.677 1.524 0.531 0.117 0.866 0.635 0.338 0.803 1.783 0.758 0.392 0.635 1.341 1.136 1.165 0.484 1.122 3.576 1.297 0.470 0.723 0.934 1.358 1.448 0.950 0.595 1547 chr5 52311718 52341527 + 0 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 41466 NR_073107 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 0.609 1.059 0.160 0.370 0.433 0.152 1.168 1.022 4.485 2.155 1.196 0.270 2.100 0.698 0.353 1.927 0.314 2.552 0.118 0.005 1.075 0.497 0.027 0.175 0.770 0.378 0.267 0.299 0.393 0.544 0.223 0.074 0.377 0.116 0.124 0.676 0.089 0.502 0.786 0.485 0.087 0.229 1101 chr2 8763731 8778142 + 0 NA Intergenic Intergenic -47014 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 0.595 0.153 0.030 0.118 0.111 0.131 0.132 0.699 0.444 0.098 0.054 0.020 0.913 0.212 0.027 0.462 0.020 0.150 1.389 0.019 0.249 0.075 0.365 0.211 0.153 0.050 0.027 0.438 0.135 4.987 0.132 0.246 0.462 0.128 0.039 0.162 0.231 0.326 0.060 0.269 5.943 4.893 961 chr18 76571383 76577139 + 0 NA Intergenic Intergenic -166014 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 0.050 0.096 0.036 0.011 0.059 0.036 0.315 0.167 0.134 0.025 0.033 0.123 0.047 8.891 0.012 0.013 0.197 0.009 0.143 0.063 0.067 0.103 0.014 0.138 0.009 0.012 0.025 0.042 0.028 0.050 313 chr11 57088569 57094218 + 0 NA intron (NM_033396, intron 1 of 11) intron (NM_033396, intron 1 of 11) 1020 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 3.259 5.098 1.838 1.305 4.382 8.028 2.748 1.687 7.855 4.647 8.737 2.301 1.272 2.130 3.841 3.606 2.557 5.349 2.643 2.867 2.041 2.176 2.999 2.232 9.499 2.250 1.078 1.871 5.652 6.014 4.025 3.650 2.083 4.011 2.819 1.862 1.997 4.972 2.513 3.910 1.213 0.638 351 chr11 67111032 67160486 + 0 NA intron (NM_001166212, intron 1 of 2) intron (NM_001166212, intron 1 of 2) 5447 NM_013246 23529 Hs.502977 NM_013246 ENSG00000175505 CLCF1 BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 cardiotrophin-like cytokine factor 1 protein-coding 2.071 2.950 0.154 1.231 2.591 2.381 2.347 1.811 6.679 3.448 2.246 2.408 1.134 3.212 3.157 3.951 0.893 5.154 0.680 0.463 2.391 2.804 1.058 2.932 8.059 1.446 0.705 2.313 3.775 6.500 2.318 3.617 3.515 2.237 3.691 1.881 3.579 5.713 5.151 2.089 1.604 1.142 1004 chr19 18524062 18551907 + 0 NA intron (NM_001009998, intron 1 of 16) intron (NM_001009998, intron 1 of 16) 7838 NM_001009998 170463 Hs.515259 NM_032627 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 0.742 1.957 0.642 0.307 1.123 4.205 1.480 0.303 nan 1.356 0.924 0.504 0.598 0.329 1.138 0.638 0.526 0.750 0.890 2.179 0.605 0.446 2.929 2.181 1.568 0.635 0.433 0.295 0.383 2.313 7.563 0.608 0.552 1.554 1.319 0.114 0.473 6.296 1.350 0.561 0.242 0.108 179 chr1 161049777 161071006 + 0 NA Intergenic Intergenic -1006 NM_030916 81607 Hs.492490 NM_030916 ENSG00000143217 NECTIN4 EDSS1|LNIR|PRR4|PVRL4|nectin-4 nectin cell adhesion molecule 4 protein-coding 1.675 0.640 0.539 2.303 2.834 0.269 1.409 2.612 10.168 4.591 3.154 2.807 0.831 3.407 1.095 2.619 1.345 0.299 0.254 0.033 1.154 0.487 0.177 0.222 1.435 0.243 0.209 0.857 0.348 0.547 0.497 0.521 3.163 4.171 0.128 1.744 2.278 0.404 0.722 0.143 0.068 0.052 1576 chr5 133858275 133873592 + 0 NA intron (NM_015288, intron 1 of 10) intron (NM_015288, intron 1 of 10) 4135 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 2.197 3.154 0.441 0.880 2.280 4.141 2.731 1.261 6.735 4.269 3.008 1.048 0.895 1.371 2.150 2.430 1.600 1.639 1.045 1.802 1.879 2.559 2.778 2.915 3.732 3.219 1.225 1.751 2.313 4.539 7.660 2.020 1.921 2.661 1.422 1.543 1.410 3.898 1.459 2.400 2.978 1.890 676 chr15 99393173 99451604 + 0 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 94733 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 0.467 0.900 0.624 0.227 0.600 5.009 0.714 0.503 2.166 1.050 1.247 0.611 0.424 0.390 0.909 0.933 0.463 1.420 0.067 0.206 1.401 0.919 2.105 7.812 1.333 0.620 0.317 0.530 2.353 5.329 0.310 1.890 3.054 1.021 0.824 1.530 2.823 3.270 0.987 1.061 0.310 0.224 654 chr15 74809567 74836402 + 0 NA Intergenic Intergenic -10534 NM_001307939 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 1.467 0.357 2.283 0.866 1.630 1.847 0.902 1.693 1.027 0.488 0.454 2.142 0.544 1.464 0.683 3.587 0.203 0.980 0.164 0.545 1.237 0.893 0.346 0.398 1.093 0.379 0.270 1.573 0.489 0.325 0.759 0.196 0.743 2.211 1.736 0.259 1.519 0.611 1.178 0.896 0.350 0.147 1484 chr4 81045575 81061968 + 0 NA Intergenic L1ME2|LINE|L1 -52653 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 0.521 0.224 0.340 0.842 1.444 1.714 1.807 1.976 3.331 1.523 2.337 1.864 2.510 1.664 0.195 3.355 0.041 1.676 0.067 0.009 1.699 0.861 0.027 0.633 1.074 0.345 0.373 0.491 6.396 0.060 0.963 0.612 0.914 0.413 3.542 1.078 0.126 0.594 0.661 1.184 0.256 0.348 398 chr12 6637061 6652817 + 0 NA intron (NM_001256799, intron 1 of 7) intron (NM_001256799, intron 1 of 7) 554 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 3.016 2.712 2.244 0.926 3.000 5.166 3.511 1.392 6.645 3.864 2.995 1.413 1.833 2.508 3.635 2.644 2.268 2.943 1.662 1.273 2.709 3.352 1.565 5.291 4.582 2.337 1.091 2.217 10.148 5.088 6.392 1.948 2.073 3.038 3.004 1.645 1.856 11.161 1.994 1.984 2.536 1.530 1333 chr22 35695239 35711760 + 0 NA intron (NR_024194, intron 1 of 14) MIR3|SINE|MIR 7702 NR_024195 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 2.975 1.782 0.342 1.184 2.447 0.839 1.227 0.390 nan 2.746 1.382 1.592 0.236 1.547 3.659 1.472 1.355 0.945 0.224 0.202 0.589 0.524 0.223 0.835 0.651 0.439 0.263 1.088 0.572 0.927 0.674 4.477 3.071 3.494 0.398 1.139 2.149 0.590 1.021 0.290 0.345 0.200 379 chr11 118963912 118980037 + 0 NA intron (NM_001382, intron 1 of 8) intron (NM_001382, intron 1 of 8) 811 NM_001382 1798 Hs.524081 NM_001382 ENSG00000172269 DPAGT1 ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 protein-coding 1.786 3.258 1.456 0.741 2.433 2.878 2.445 1.067 4.034 1.930 1.286 1.791 1.399 2.869 4.039 2.504 0.984 1.769 0.900 0.879 1.896 1.918 2.059 2.497 7.369 4.058 2.012 1.274 3.735 2.092 3.511 1.482 3.249 2.935 4.456 1.478 2.542 3.911 2.029 2.531 1.405 0.849 1314 chr22 17928472 17934088 + 0 NA intron (NM_001290046, intron 1 of 18) AluSz|SINE|Alu -25348 NM_001290047 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2, histone acetyl-lysine reader protein-coding 0.127 0.028 5.766 0.037 0.011 0.096 0.037 nan 0.114 0.148 0.021 0.039 0.085 0.077 0.016 0.085 0.052 0.050 0.046 0.013 0.013 0.030 0.049 0.021 0.045 0.073 0.147 0.043 0.050 0.014 0.113 0.063 0.016 0.022 0.074 0.042 0.100 0.048 0.021 0.019 84 chr1 78442444 78450207 + 0 NA intron (NM_001317099, intron 1 of 3) intron (NM_001317099, intron 1 of 3) 457 NM_001317099 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 3.294 4.200 3.673 1.170 3.655 2.575 3.331 1.164 4.907 3.473 2.331 1.827 1.366 2.147 3.726 3.145 1.035 2.544 1.620 1.768 2.393 2.703 1.310 2.855 4.227 2.527 1.144 3.701 5.060 2.903 2.837 1.097 1.624 5.789 3.729 1.320 1.754 2.694 1.619 1.305 3.191 2.672 315 chr11 61519407 61530629 + 0 NA non-coding (NR_026882, exon 1 of 4) non-coding (NR_026882, exon 1 of 4) 118 NR_026882 26070 Hs.564254 NR_026882 ENSG00000124915 DKFZP434K028 - uncharacterized LOC26070 ncRNA 3.342 1.097 0.006 0.355 0.641 0.078 0.348 0.758 4.832 1.396 0.217 0.679 0.190 0.368 0.516 1.167 0.017 2.399 2.633 0.025 0.915 0.588 0.244 0.226 0.690 0.806 0.313 0.959 0.274 6.337 0.661 0.725 0.319 0.332 0.160 0.555 0.081 0.724 0.323 0.149 0.036 0.040 1506 chr4 188520330 188530427 + 0 NA intron (NR_110436, intron 2 of 2) HAL1-3A_ME|LINE|L1 68417 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LOC100506272 - uncharacterized LOC100506272 ncRNA 0.087 0.157 0.043 0.170 0.168 0.019 0.068 0.043 0.404 0.088 0.098 0.043 0.100 0.474 0.047 0.245 0.048 0.030 0.041 0.408 0.219 0.127 0.129 4.127 1.989 0.023 0.227 0.113 0.353 0.023 0.033 0.078 0.046 0.029 0.161 0.309 0.022 0.083 1.452 1.691 715 chr16 22407249 22419454 + 0 NA intron (NR_136333, intron 2 of 3) intron (NR_136333, intron 2 of 3) 16261 NR_136333 105371130 Hs.639607 NR_136333 MFSD13B - major facilitator superfamily domain containing 13B pseudo 5.447 1.591 0.980 0.281 0.880 0.043 2.599 0.969 0.991 0.592 0.722 0.514 0.068 3.144 0.940 0.719 0.741 1.263 0.057 0.042 1.676 1.031 0.030 0.119 0.128 0.034 0.039 1.502 0.250 0.193 0.058 0.113 0.659 0.309 0.068 0.101 0.054 0.043 0.466 0.361 0.024 0.016 204 chr1 221911825 221918488 + 0 NA intron (NM_007207, intron 1 of 3) intron (NM_007207, intron 1 of 3) 362 NR_111940 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 5.835 2.699 0.867 0.787 2.801 0.907 4.228 3.864 4.389 2.582 3.727 1.114 0.779 2.511 2.003 1.632 1.418 1.996 1.270 0.041 2.536 2.518 0.926 0.906 1.148 1.857 1.188 1.674 2.710 2.175 1.722 2.192 1.869 4.739 0.943 1.264 1.209 2.062 2.301 0.878 0.527 0.314 1658 chr6 31780349 31806676 + 0 NA Intergenic Intergenic -2000 NM_005346 3304 Hs.274402 NM_005346 ENSG00000204388 HSPA1B HSP70-1B|HSP70-2|HSP70.2 heat shock protein family A (Hsp70) member 1B protein-coding 4.280 4.101 1.882 1.037 3.771 3.175 1.979 1.858 4.214 2.335 3.928 1.653 1.029 1.714 5.014 5.250 1.512 1.987 1.054 2.171 3.051 2.985 0.715 3.723 5.724 3.257 1.848 1.652 4.569 2.639 5.934 3.703 3.115 3.537 4.163 1.743 4.025 5.098 2.734 1.834 1.768 1.280 704 chr16 11686919 11692903 + 0 NA Intergenic Intergenic -8589 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 1.410 0.624 6.500 1.231 2.513 0.202 1.274 0.963 6.836 2.389 0.663 0.832 0.059 1.178 0.992 1.574 1.633 0.133 0.129 0.046 0.968 0.381 0.545 1.143 0.184 0.091 0.038 0.729 0.094 1.182 0.126 0.514 2.590 4.151 0.110 0.409 0.938 0.203 0.647 0.228 0.019 0.030 567 chr14 37889763 37907433 + 0 NA intron (NM_138731, intron 12 of 13) AT_rich|Low_complexity|Low_complexity 165727 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 1.225 0.072 0.926 0.021 0.145 0.032 0.116 0.077 2.631 0.926 4.621 0.091 0.056 0.074 0.612 0.092 0.102 0.104 0.050 0.016 0.114 0.025 0.012 0.110 0.052 0.027 0.013 0.091 0.085 0.165 0.014 0.196 1.001 0.210 0.125 0.312 1.194 0.026 0.035 0.021 0.010 0.006 1556 chr5 68529445 68536821 + 0 NA intron (NM_001324070, intron 2 of 8) L2a|LINE|L2 2511 NM_001324072 1022 Hs.184298 NM_001799 ENSG00000134058 CDK7 CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15 cyclin dependent kinase 7 protein-coding 1.719 1.689 0.376 0.525 1.703 1.092 1.575 1.939 1.236 1.027 0.880 0.474 0.590 1.055 1.815 2.044 0.415 0.990 0.284 0.224 1.940 1.552 1.389 0.781 1.312 1.552 0.872 0.664 0.529 0.889 2.098 0.491 1.031 1.696 5.705 0.512 0.571 0.974 1.383 0.567 1.557 1.446 774 chr16 89554537 89559869 + 0 NA promoter-TSS (NM_001256182) promoter-TSS (NM_001256182) -234 NM_013275 29123 Hs.335003 NM_013275 ENSG00000167522 ANKRD11 ANCO-1|ANCO1|LZ16|T13 ankyrin repeat domain 11 protein-coding 3.959 5.507 0.571 0.641 5.274 3.503 3.854 0.437 4.961 2.518 3.337 0.684 0.749 0.856 2.471 1.922 1.389 2.794 1.882 2.866 2.442 2.592 2.714 2.776 6.356 5.777 3.153 1.063 2.901 4.962 6.062 1.813 2.964 10.027 3.984 1.374 1.521 4.835 1.602 1.309 1.825 1.077 444 chr12 53757097 53784907 + 0 NA Intergenic Intergenic -2977 NM_001251825 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 1.178 1.816 2.865 0.981 2.232 1.786 1.735 1.259 4.419 1.886 1.889 0.746 0.692 1.278 3.269 2.699 0.753 3.079 0.676 1.052 2.459 2.328 1.137 3.280 1.925 1.677 0.767 1.802 2.350 4.299 3.509 1.380 2.651 1.999 1.646 1.309 2.327 2.447 2.378 1.033 0.628 0.496 1774 chr7 73981803 74010044 + 0 NA intron (NM_001199207, intron 22 of 26) intron (NM_001199207, intron 22 of 26) -76068 NM_033000 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 0.818 0.867 0.052 0.598 0.898 0.082 2.603 1.042 1.306 0.371 1.388 1.205 0.678 1.235 2.595 4.671 1.148 0.641 0.109 0.034 1.304 1.154 0.203 0.802 0.235 0.113 0.072 1.743 0.791 2.056 0.551 0.085 1.290 1.405 3.282 0.771 1.036 0.148 1.238 0.304 0.077 0.055 1690 chr6 52969303 52996379 + 0 NA Intergenic L1MC|LINE|L1 30783 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 0.459 0.092 0.032 0.288 0.846 0.042 0.369 0.902 4.351 0.781 1.032 1.020 0.205 0.871 1.026 2.154 0.116 0.092 0.226 0.016 0.330 0.133 0.024 0.065 0.136 0.071 0.040 0.639 0.228 0.219 0.108 0.276 0.832 0.802 0.092 0.231 0.474 0.077 0.300 0.454 0.022 0.017 450 chr12 56587326 56599532 + 0 NA Intergenic Intergenic -10071 NM_139067 6601 Hs.236030 NM_003075 ENSG00000139613 SMARCC2 BAF170|CRACC2|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding 0.176 0.168 0.183 0.063 0.278 0.073 1.219 0.636 0.424 0.116 0.469 0.046 0.355 0.376 0.253 5.316 0.054 0.133 0.065 0.045 1.681 0.938 1.083 0.091 0.099 0.095 0.069 0.402 0.298 0.218 0.198 0.071 0.111 0.304 0.266 0.020 0.055 0.314 0.389 0.018 0.071 0.029 657 chr15 76725393 76733633 + 0 NA intron (NM_001145923, intron 25 of 31) HAL1|LINE|L1 100448 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 0.609 0.104 3.312 0.064 0.115 0.125 0.128 0.171 0.071 0.182 0.071 0.014 0.066 0.350 0.069 0.192 0.034 0.024 0.034 0.042 0.604 0.077 0.101 0.632 0.335 0.055 0.157 0.093 0.086 0.029 0.133 0.111 0.053 0.147 0.157 0.121 0.039 0.009 0.063 0.043 1705 chr6 122271200 122433376 + 0 NA Intergenic Intergenic -368408 NM_001243094 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 0.062 0.073 0.025 0.026 0.081 0.045 0.044 0.015 0.164 0.075 0.105 0.036 0.017 0.054 0.203 0.047 0.020 0.133 0.030 6.412 0.015 0.016 0.014 0.048 0.053 0.017 0.012 0.024 0.073 0.038 0.077 0.010 0.062 0.043 0.025 0.030 0.027 0.024 0.019 0.021 0.017 0.008 541 chr13 111520818 111526019 + 0 NA promoter-TSS (NR_027701) promoter-TSS (NR_027701) -763 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 0.140 0.792 0.358 1.679 4.100 0.145 0.563 0.181 2.267 0.727 0.139 1.405 0.477 0.319 2.224 1.864 0.221 1.040 0.076 1.492 1.525 0.281 1.226 3.320 1.066 0.597 0.842 1.996 0.909 1.456 0.971 0.307 11.951 2.450 0.485 0.779 1.108 2.174 1.095 1.838 1.549 745 chr16 67239947 67248716 + 0 NA intron (NM_001004055, intron 2 of 6) intron (NM_001004055, intron 2 of 6) -8033 NR_029887 442901 NR_029887 ENSG00000207948 MIR328 MIRN328|hsa-mir-328|mir-328 microRNA 328 ncRNA 0.083 0.349 0.007 2.136 2.117 0.500 0.798 0.566 1.403 0.422 0.738 0.433 0.299 0.410 1.867 1.974 0.339 0.475 0.058 0.031 2.834 1.895 0.254 0.931 0.599 0.427 0.294 0.140 0.091 0.539 0.291 0.202 1.143 1.879 0.380 0.070 0.153 0.334 2.729 0.078 0.039 0.023 16 chr1 9947855 9962573 + 0 NA intron (NM_020248, intron 1 of 5) AluY|SINE|Alu 15102 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 0.424 0.524 0.410 1.457 3.053 0.795 2.621 2.267 nan 1.214 2.116 1.886 1.238 2.001 1.326 3.883 1.613 1.386 0.284 0.094 2.618 1.993 0.586 0.095 3.944 5.221 2.054 1.324 1.940 0.155 4.342 0.031 1.302 4.719 4.738 0.839 1.001 1.612 1.049 0.778 0.939 0.509 1847 chr8 48642852 48652623 + 0 NA intron (NR_104581, intron 16 of 16) intron (NR_104581, intron 16 of 16) 2989 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 1.366 5.184 1.855 0.943 3.404 3.633 5.322 1.055 5.997 4.563 3.416 1.169 0.929 3.144 1.146 1.574 1.370 1.402 0.833 0.470 3.237 4.766 2.060 1.700 2.885 4.590 1.826 1.632 1.677 5.129 4.509 4.021 2.498 2.672 3.341 1.828 1.042 3.934 2.296 0.934 0.690 0.642 696 chr16 4394040 4429867 + 0 NA intron (NR_145128, intron 16 of 27) intron (NR_145128, intron 16 of 27) -9896 NM_138440 114990 Hs.372579 NM_138440 ENSG00000168140 VASN SLITL2 vasorin protein-coding 2.405 1.892 0.218 0.776 1.988 0.455 1.498 0.442 5.713 2.868 1.325 0.779 0.080 0.473 1.036 1.910 0.839 0.389 0.139 0.186 0.466 0.329 0.657 1.575 1.204 0.362 0.200 1.134 0.275 0.942 0.515 0.365 3.585 2.817 0.499 0.251 1.504 0.863 0.471 0.146 0.145 0.067 1033 chr19 40430739 40478643 + 0 NA Intergenic PRIMA41-int|LTR|ERV1 -14158 NM_003890 8857 Hs.111732 NM_003890 ENSG00000275395 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 0.498 0.386 0.131 0.222 0.479 0.245 0.306 0.406 nan 0.331 0.492 0.147 0.239 1.159 0.384 0.292 0.124 0.366 0.131 0.159 0.837 0.538 0.293 0.256 0.440 0.258 0.138 0.483 0.222 5.938 0.998 1.074 0.973 0.377 0.214 0.267 0.229 0.330 0.101 0.169 0.121 0.082 595 chr14 68967865 68996336 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 113404 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.885 0.246 0.331 0.313 0.192 0.064 0.367 1.056 4.494 1.580 3.036 0.616 0.565 1.181 1.204 1.202 0.244 0.825 0.036 0.059 2.307 1.322 0.041 0.531 0.214 0.121 0.107 0.543 0.379 0.337 0.202 0.075 1.498 0.206 0.299 0.694 0.643 0.124 0.500 1.098 0.032 0.052 1622 chr6 13392022 13413894 + 0 NA intron (NM_018988, intron 1 of 1) L1MB8|LINE|L1 5411 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 1.121 0.930 0.054 0.243 0.403 0.078 0.141 0.082 0.245 0.150 0.242 0.014 0.011 0.515 0.835 0.308 1.106 3.478 0.060 0.032 0.566 0.328 0.030 1.058 0.160 0.129 0.093 0.083 0.141 1.366 0.090 0.047 1.133 0.358 0.063 0.732 0.098 0.085 0.264 0.346 0.011 0.009 518 chr13 33848369 33860723 + 0 NA intron (NR_046693, intron 2 of 2) intron (NR_046693, intron 2 of 2) 2855 NR_046693 100874241 Hs.662433 NR_046693 ENSG00000236581 STARD13-AS STARD13-AS2 STARD13 antisense RNA ncRNA 3.127 1.360 0.636 0.585 1.036 2.357 0.864 1.272 1.348 0.704 0.919 0.723 0.893 1.580 2.565 1.254 0.486 0.844 0.041 0.871 0.524 0.538 0.611 0.884 3.185 1.404 0.569 2.420 0.606 1.012 0.697 0.788 0.808 3.165 0.407 2.778 1.043 0.975 1.974 1.925 2.072 1833 chr8 27720128 27737761 + 0 NA 3' UTR (NM_173833, exon 9 of 9) 3' UTR (NM_173833, exon 9 of 9) 14689 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 0.162 0.054 0.007 0.140 0.150 2.370 0.043 0.287 0.454 0.077 0.031 0.615 0.160 0.055 1.213 0.614 0.033 0.583 0.045 0.016 0.694 0.493 0.033 3.846 0.277 0.109 0.080 0.123 0.126 5.578 0.053 2.268 1.738 0.287 0.129 0.868 0.613 2.202 0.574 0.172 0.020 0.006 1408 chr3 141102524 141147094 + 0 NA intron (NM_001080412, intron 7 of 7) intron (NM_001080412, intron 7 of 7) -81080 NM_001303246 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 0.505 1.663 0.113 0.098 0.339 2.382 0.419 0.078 2.501 1.135 0.994 0.112 0.206 0.387 0.144 0.764 0.083 0.442 0.207 0.112 0.570 0.378 0.201 5.655 0.653 0.356 0.159 0.463 0.290 3.103 0.919 1.083 4.198 0.205 0.995 1.240 1.613 0.545 0.304 0.415 0.114 0.096 466 chr12 65171606 65191371 + 0 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) 6515 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 0.880 0.126 0.272 0.111 0.463 0.137 0.727 0.214 3.004 1.427 2.942 0.171 0.066 0.304 0.978 0.412 0.145 0.666 0.384 0.085 0.371 0.194 0.116 0.532 0.228 0.119 0.091 2.472 0.130 0.635 0.696 1.168 1.286 0.387 0.218 0.652 1.200 0.328 0.083 0.035 0.029 0.026 570 chr14 39636966 39646775 + 0 NA Intergenic AluSz|SINE|Alu -2236 NM_001079537 122553 Hs.13303 NM_177452 ENSG00000182400 TRAPPC6B TPC6 trafficking protein particle complex 6B protein-coding 3.223 2.148 3.942 1.023 2.760 3.608 4.414 1.748 17.703 16.611 4.807 2.221 1.697 2.413 2.221 2.285 1.295 3.075 1.900 2.537 2.972 3.158 0.815 3.255 3.346 3.505 1.889 2.718 3.484 3.270 2.349 2.143 2.416 4.338 6.883 2.261 1.683 3.749 3.199 2.823 1.755 1.058 1860 chr8 68371902 68376240 + 0 NA intron (NR_136224, intron 2 of 4) intron (NR_136224, intron 2 of 4) 118002 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 3.382 0.150 1.882 0.174 1.341 0.103 0.313 0.218 4.617 4.952 2.483 2.360 0.327 0.318 1.005 0.951 0.064 0.045 0.095 0.064 0.108 0.152 0.150 0.148 0.028 6.414 0.229 0.094 0.131 0.145 0.812 3.402 1.613 0.142 0.970 0.174 1.088 0.036 0.027 1781 chr7 74507546 74512293 + 0 NA intron (NM_173537, intron 1 of 15).2 intron (NM_173537, intron 1 of 15).2 1572 NM_173537 84163 Hs.647017 NM_173537 ENSG00000196275 GTF2IRD2 FP630|GTF2IRD2 alpha|GTF2IRD2A GTF2I repeat domain containing 2 protein-coding 3.136 6.067 2.885 0.676 3.479 4.432 7.090 1.417 7.640 6.103 6.996 1.667 1.560 2.033 2.840 4.111 2.883 5.175 3.488 3.623 6.822 9.929 3.767 9.088 6.369 3.367 1.709 4.106 5.395 5.365 8.014 2.610 3.624 6.594 9.328 3.461 4.461 3.968 3.675 3.834 2.365 1.873 461 chr12 58225322 58241689 + 0 NA intron (NM_005730, intron 1 of 7) AluY|SINE|Alu 7242 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 1.753 1.526 1.160 0.282 1.270 1.927 1.660 0.497 5.034 3.986 3.686 0.742 1.124 0.977 1.264 0.902 0.706 2.612 1.203 2.442 1.299 1.342 1.635 1.066 2.176 2.372 1.106 0.812 2.015 2.337 4.857 1.004 1.246 1.744 12.112 0.517 0.969 4.046 1.138 0.861 0.991 0.534 1757 chr7 55117979 55167664 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -34689 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 2.898 1.109 0.371 0.360 0.568 2.043 1.904 0.791 1.215 0.451 7.850 0.635 0.852 0.788 1.869 3.129 1.324 2.176 0.313 0.011 1.719 0.941 0.654 1.180 3.145 1.507 0.638 3.963 1.550 0.973 0.641 0.198 0.294 0.860 5.731 0.374 0.358 0.641 2.414 1.765 1.302 1.051 1719 chr6 157097518 157104171 + 0 NA promoter-TSS (NR_039676) promoter-TSS (NR_039676) 21 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 4.050 4.120 3.106 0.938 4.774 5.629 4.535 0.888 14.272 10.575 5.354 0.738 1.549 2.218 3.832 2.408 2.196 2.315 1.941 5.040 2.461 4.053 1.697 3.528 5.824 7.425 3.379 3.291 2.968 5.274 10.076 1.544 4.069 5.050 4.025 1.505 4.386 6.026 3.327 3.281 3.199 2.101 691 chr16 3054064 3064601 + 0 NA Intergenic AluSg|SINE|Alu -3125 NM_020982 9080 Hs.296949 NM_020982 ENSG00000213937 CLDN9 - claudin 9 protein-coding 11.436 0.343 2.090 1.334 2.988 0.083 2.251 1.234 7.928 3.971 4.019 2.030 0.202 0.488 4.189 3.327 2.701 0.219 0.265 0.302 0.470 0.199 0.643 0.093 0.933 0.258 0.208 2.102 0.279 0.394 0.602 0.570 1.385 4.760 0.455 0.509 3.218 1.073 0.608 0.105 0.060 0.033 488 chr12 110433181 110443429 + 0 NA intron (NM_033121, intron 1 of 14) intron (NM_033121, intron 1 of 14) 1070 NM_033121 88455 Hs.528703 NM_033121 ENSG00000076513 ANKRD13A ANKRD13|NY-REN-25 ankyrin repeat domain 13A protein-coding 2.134 1.172 1.570 1.232 2.530 1.127 4.393 1.864 2.846 1.810 2.261 0.713 0.969 3.321 1.604 3.648 1.629 1.128 0.665 0.476 2.492 2.504 1.055 1.058 1.355 1.559 0.826 2.404 1.843 2.149 1.947 1.394 1.518 1.984 2.108 0.790 0.940 2.601 1.523 0.660 0.573 0.264 1476 chr4 54928440 54934705 + 0 NA promoter-TSS (NM_012110) promoter-TSS (NM_012110) -757 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 2.235 2.273 0.946 0.529 1.529 2.088 2.267 1.998 1.986 1.860 1.683 1.341 1.583 2.649 1.864 2.202 0.728 3.958 1.426 0.484 1.727 1.541 1.602 0.740 3.181 5.931 2.758 1.324 4.925 1.377 1.670 1.284 1.334 1.546 3.919 0.684 1.079 3.037 1.817 1.706 0.423 0.355 1830 chr8 22921017 22933812 + 0 NA promoter-TSS (NR_027140) promoter-TSS (NR_027140) -714 NM_003842 8795 Hs.521456 NM_003842 ENSG00000120889 TNFRSF10B CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9 TNF receptor superfamily member 10b protein-coding 3.566 2.411 0.393 0.785 2.054 1.264 2.157 2.309 5.502 3.288 0.788 2.025 0.820 3.010 1.793 3.239 0.336 2.234 1.128 0.964 2.906 3.074 0.615 1.534 4.504 2.464 1.085 1.578 3.487 3.786 2.605 2.163 2.638 1.856 1.079 2.021 0.486 2.239 1.794 2.024 1.044 0.817 1788 chr7 87893318 87942208 + 0 NA intron (NM_024636, intron 1 of 4) AluSp|SINE|Alu 18465 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 0.427 0.118 0.310 0.148 0.144 0.030 1.818 1.242 3.155 1.194 4.080 0.135 0.034 1.445 0.774 0.540 0.374 0.119 0.027 0.017 0.041 0.031 0.032 0.065 0.126 0.052 0.046 0.532 0.125 0.073 0.103 0.476 1.455 0.400 0.044 0.585 2.983 0.039 0.144 0.034 0.024 0.014 48 chr1 36001430 36006091 + 0 NA intron (NM_024874, intron 2 of 20) L2a|LINE|L2 19277 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR KIAA0319 like protein-coding 0.122 0.199 7.086 0.040 0.148 0.067 0.055 0.318 0.132 0.400 0.093 0.061 0.360 0.260 1.312 0.831 0.208 0.093 0.079 0.092 0.149 0.013 0.033 0.050 0.089 0.122 0.190 0.057 0.137 0.162 0.141 0.075 0.086 0.082 0.049 0.011 1541 chr5 44725972 44732339 + 0 NA Intergenic Intergenic 79740 NR_109863 100506674 Hs.575213 NR_109862 BRCAT54 - breast cancer-associated transcript 54 ncRNA 0.113 0.061 4.452 0.090 0.448 0.020 0.226 0.166 0.893 0.359 0.305 0.023 0.102 0.107 0.268 0.015 0.086 0.048 0.107 0.193 0.023 0.093 0.145 0.009 0.068 0.480 0.206 0.141 0.033 0.088 0.052 0.581 0.087 0.020 0.057 0.164 0.111 0.045 0.019 1640 chr6 24650014 24670395 + 0 NA intron (NM_016614, intron 2 of 6) MLT1H1|LTR|ERVL-MaLR 6911 NM_016614 51567 Hs.403010 NM_016614 ENSG00000111802 TDP2 AD022|EAP2|EAPII|TTRAP|dJ30M3.3|hTDP2 tyrosyl-DNA phosphodiesterase 2 protein-coding 0.892 2.338 0.222 0.520 1.292 5.839 0.437 0.314 1.020 0.762 1.044 0.654 0.278 0.289 2.119 0.508 0.137 1.462 0.668 0.402 2.019 1.715 0.271 4.099 0.905 0.815 0.472 0.210 0.920 1.750 1.151 1.364 2.147 1.506 0.969 1.818 0.477 0.772 0.797 0.352 0.175 0.124 772 chr16 89300211 89315903 + 0 NA Intergenic Intergenic 23946 NM_182531 197320 Hs.647385 NM_182531 ENSG00000170100 ZNF778 - zinc finger protein 778 protein-coding 0.581 1.444 0.198 0.725 2.407 1.640 2.034 0.383 1.888 0.774 1.210 0.846 0.302 0.605 0.892 0.847 0.299 1.164 0.658 0.486 1.674 1.739 0.503 0.689 1.647 1.945 0.922 0.692 0.673 1.173 2.149 0.559 0.800 3.611 1.406 0.375 0.422 1.719 1.012 0.252 0.217 0.181 1291 chr21 33782580 33791151 + 0 NA intron (NM_001320744, intron 1 of 5) intron (NM_001320744, intron 1 of 5) 2120 NR_104472 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 0.218 2.432 0.036 0.023 0.013 6.400 0.184 0.086 1.794 0.581 0.928 0.445 0.838 2.147 0.167 0.850 0.044 1.983 0.082 0.016 0.436 0.184 0.217 4.594 4.950 0.219 0.154 0.047 0.333 4.896 0.235 4.644 2.597 0.034 0.033 1.396 4.648 0.956 0.082 1.143 3.274 3.875 650 chr15 72514286 72532942 + 0 NA 5' UTR (NM_001206796, exon 1 of 12) 5' UTR (NM_001206796, exon 1 of 12) 351 NM_001316318 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 4.748 4.995 2.584 1.531 4.092 5.447 4.112 2.656 5.309 3.041 2.126 3.651 2.457 3.060 5.041 3.707 2.118 4.654 0.572 1.094 3.679 4.571 2.018 6.125 6.742 3.355 1.378 1.727 12.153 5.413 4.330 3.169 4.815 2.847 4.272 3.694 1.506 3.015 3.298 4.738 3.813 3.619 1068 chr19 48100839 48114050 + 0 NA Intergenic Intergenic -4009 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 3.452 3.724 0.710 0.734 2.067 2.403 3.567 1.217 nan 1.919 2.312 0.453 0.628 1.306 4.529 1.915 2.340 2.276 1.490 1.251 0.782 0.806 1.086 1.469 5.537 3.149 1.460 1.266 2.141 4.013 2.196 1.945 1.768 2.473 2.327 1.336 2.991 3.097 1.454 1.356 1.826 1.481 1715 chr6 143162571 143175980 + 0 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 97063 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 1.131 0.746 2.411 0.906 1.585 1.002 1.544 0.596 5.663 3.431 2.546 0.476 0.714 1.915 1.687 1.223 1.134 2.119 0.736 1.025 1.166 0.837 0.089 0.280 0.542 0.504 0.304 1.460 2.318 0.449 1.724 0.859 0.610 2.115 1.585 0.456 0.774 0.260 0.676 0.536 2.083 2.898 687 chr16 2195317 2215102 + 0 NA promoter-TSS (NR_002736) promoter-TSS (NR_002736) -103 NR_002736 26788 NR_002736 ENSG00000206630 SNORD60 RNU60|U60 small nucleolar RNA, C/D box 60 snoRNA 2.605 4.747 0.148 1.045 2.451 1.475 2.199 0.470 7.511 4.198 1.163 1.586 1.133 1.490 2.768 2.960 0.910 1.170 1.111 0.638 1.684 1.334 1.574 4.752 1.837 1.842 0.942 1.346 0.644 2.639 1.632 3.293 3.440 2.198 1.768 1.466 1.920 2.800 2.026 0.723 1.285 0.847 989 chr19 12885213 12912717 + 0 NA TTS (NR_049864) TTS (NR_049864) 1023 NR_049864 100847071 NR_049864 ENSG00000263800 MIR5684 - microRNA 5684 ncRNA 4.649 3.306 1.621 1.764 4.826 5.729 3.089 1.882 nan 7.793 6.382 2.120 1.005 2.912 6.050 3.521 3.366 1.716 1.769 3.400 2.107 2.324 2.602 3.664 5.003 1.811 0.931 1.870 2.367 3.951 5.606 1.958 3.763 5.799 2.253 2.285 4.722 5.403 4.270 1.487 0.626 0.349 317 chr11 62304627 62330232 + 0 NA Intergenic AluSx|SINE|Alu -3097 NM_024060 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 3.625 4.002 1.829 1.384 2.453 3.313 2.611 1.916 3.312 1.949 1.913 3.558 1.685 2.127 3.371 5.201 1.790 3.323 0.413 0.346 2.412 2.583 2.022 2.756 6.502 7.182 2.750 1.619 10.132 4.210 4.278 0.951 1.768 3.814 5.329 1.218 1.269 3.704 3.327 4.946 4.296 3.010 965 chr19 1016143 1032434 + 0 NA Intergenic Intergenic -1986 NM_004368 1265 Hs.651512 NM_004368 ENSG00000064666 CNN2 - calponin 2 protein-coding 1.883 2.129 1.700 0.781 3.474 3.076 2.698 0.908 7.186 4.711 4.099 1.147 0.972 3.018 2.120 2.108 0.709 1.161 0.443 1.959 2.151 2.737 2.395 1.302 4.928 2.412 1.280 1.011 2.456 2.422 4.055 1.295 2.322 4.954 2.667 1.326 0.310 6.178 1.530 1.653 1.852 1.053 1703 chr6 114336626 114340607 + 0 NA intron (NR_125845, intron 4 of 9) HERVH-int|LTR|ERV1 45425 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 0.395 0.387 0.094 0.552 1.581 0.894 0.204 2.322 0.428 0.240 0.210 0.615 2.496 0.146 0.249 1.040 0.025 1.826 1.361 0.146 0.120 1.341 9.186 3.299 0.771 0.140 0.061 0.231 0.079 0.339 1.679 0.211 0.152 0.418 0.161 0.893 0.019 0.853 0.368 137 chr1 153604424 153608971 + 0 NA promoter-TSS (NM_001024210) promoter-TSS (NM_001024210) -129 NM_001024210 6284 Hs.516505 NM_005979 ENSG00000189171 S100A13 - S100 calcium binding protein A13 protein-coding 3.494 3.305 2.296 2.257 5.520 3.525 3.829 2.265 33.644 25.135 4.049 3.181 2.722 3.221 3.689 3.593 1.489 2.921 3.128 2.413 2.895 4.049 1.764 4.792 6.200 5.309 2.369 2.150 2.652 3.915 3.658 4.594 9.476 5.833 3.649 3.363 4.871 8.976 3.295 1.124 2.256 1.503 1540 chr5 43120139 43123266 + 0 NA promoter-TSS (NM_001330714) promoter-TSS (NM_001330714) 4 NM_001330713 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 5.050 5.099 2.419 3.956 12.499 5.007 9.276 2.703 16.533 12.789 9.792 2.386 2.672 2.975 7.893 6.064 3.950 4.289 3.208 5.643 5.415 6.771 3.624 5.598 5.503 7.624 4.091 3.950 2.683 5.987 7.937 6.521 5.247 21.382 6.798 3.740 4.820 14.879 6.728 2.369 4.463 3.194 663 chr15 85290222 85297632 + 0 NA intron (NM_014630, intron 1 of 10) L2a|LINE|L2 2109 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 3.476 3.355 1.262 0.643 2.930 3.230 2.759 0.971 4.650 2.933 2.066 1.208 0.780 1.899 2.983 2.160 1.517 1.950 0.873 2.163 1.851 1.846 1.811 1.995 1.943 1.899 1.082 1.182 2.853 6.611 2.505 3.451 6.505 3.676 1.769 1.602 1.610 3.028 1.528 2.586 1.065 0.609 1517 chr5 10300676 10319444 + 0 NA Intergenic AluJb|SINE|Alu -1892 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 0.181 0.257 0.043 2.064 3.186 0.574 1.168 0.898 3.383 0.698 1.677 0.835 0.221 0.640 1.137 4.558 1.508 1.742 0.106 0.207 1.728 1.143 0.232 1.624 1.281 0.411 0.332 0.373 0.149 0.603 1.092 2.833 2.252 1.956 1.193 1.470 1.992 1.766 1.439 0.443 0.218 0.144 417 chr12 14985932 15001015 + 0 NA exon (NM_021071, exon 2 of 3) exon (NM_021071, exon 2 of 3) 2940 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 0.276 0.434 0.008 0.673 0.813 0.479 1.222 0.998 1.404 0.605 0.448 0.601 0.555 0.514 0.910 0.730 0.360 4.170 0.485 0.055 1.089 0.407 0.142 0.168 2.203 0.828 0.518 0.305 1.608 0.367 0.375 0.225 0.273 0.213 0.240 0.081 0.427 0.854 0.577 0.157 0.651 0.538 1838 chr8 33739892 33754730 + 0 NA Intergenic Intergenic -289687 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 5.686 0.074 0.021 0.009 0.013 0.136 0.043 0.036 0.060 0.128 0.029 0.055 0.007 0.097 0.029 0.007 0.043 0.040 0.009 0.009 0.005 0.062 0.043 0.004 0.011 0.005 0.080 0.022 0.024 0.011 0.027 0.014 0.008 0.039 0.064 0.190 0.008 0.007 185 chr1 167187711 167200265 + 0 NA intron (NM_002697, intron 1 of 15) intron (NM_002697, intron 1 of 15) 3865 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 2.258 1.757 0.971 0.992 2.833 0.987 1.927 0.919 4.352 2.181 2.153 1.118 0.451 2.798 2.882 1.871 0.911 1.331 0.658 2.119 1.607 1.587 1.000 2.257 2.973 1.983 0.807 1.162 1.187 2.484 1.508 1.282 2.357 3.059 1.681 1.767 1.059 1.733 2.021 0.886 1.321 1.330 294 chr11 6623388 6629515 + 0 NA intron (NM_001278442, intron 2 of 11) L2c|LINE|L2 1411 NM_001014795 3611 Hs.706355 NM_004517 ENSG00000166333 ILK HEL-S-28|ILK-1|ILK-2|P59|p59ILK integrin linked kinase protein-coding 2.522 3.881 0.567 0.900 2.469 3.978 1.517 1.585 3.425 2.495 2.572 0.932 1.225 1.496 1.633 4.061 0.404 2.198 1.037 0.723 2.118 1.937 1.801 1.324 5.692 6.532 3.168 0.873 4.625 2.267 2.392 2.098 1.272 2.689 4.571 1.151 1.096 2.644 2.124 2.921 2.241 1.733 1740 chr7 17393025 17491776 + 0 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 27859 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 0.413 0.336 0.014 0.112 0.222 1.330 0.625 0.189 4.450 1.300 1.448 0.240 0.169 0.501 0.370 0.195 0.397 0.489 0.083 0.014 0.683 0.377 0.108 1.173 0.533 0.082 0.044 0.174 0.399 0.445 0.037 0.417 1.398 0.125 0.308 0.624 0.602 0.585 0.495 0.226 0.058 0.026 1300 chr21 36625467 36630215 + 0 NA Intergenic L2c|LINE|L2 -206246 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 3.988 0.384 6.835 2.188 3.729 0.776 2.115 1.926 3.080 3.086 4.165 1.810 2.044 2.535 2.371 2.965 3.256 1.899 0.086 1.991 1.164 0.061 2.753 1.480 0.430 0.222 2.011 1.958 0.206 1.661 2.076 3.088 2.116 4.123 1.734 3.409 0.907 1.880 1.378 0.721 0.612 493 chr12 116795139 116824870 + 0 NA Intergenic AluJr|SINE|Alu 56119 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 0.094 0.235 0.025 0.019 0.046 0.047 0.062 0.134 0.948 0.176 0.236 0.103 0.118 0.201 0.243 0.295 0.104 0.735 0.259 0.056 0.318 0.209 0.197 0.264 0.669 0.357 0.205 0.084 1.209 6.046 0.145 3.228 1.699 0.110 0.075 0.189 0.162 1.297 0.393 0.195 0.277 0.085 1487 chr4 87844877 87859695 + 0 NA intron (NR_038841, intron 2 of 2) L2c|LINE|L2 3716 NR_038841 100506746 Hs.657766 NR_038841 ENSG00000163633 LOC100506746 - uncharacterized LOC100506746 ncRNA 1.254 2.167 0.226 0.628 1.630 1.600 2.274 1.923 2.748 1.377 1.624 1.784 0.901 1.663 1.568 2.293 0.839 1.149 0.332 0.197 1.377 1.294 0.745 0.370 3.208 2.280 1.063 0.958 3.203 1.396 1.278 1.081 1.617 1.773 1.423 1.197 1.359 1.125 1.189 0.915 0.556 0.370 1162 chr2 120988449 121004212 + 0 NA Intergenic Intergenic -14084 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 1.073 0.417 0.399 1.789 3.064 0.067 2.248 1.297 2.186 0.481 1.387 2.302 1.014 2.671 3.125 4.699 0.628 0.303 0.070 0.034 2.813 2.198 0.110 0.166 0.466 0.257 0.144 3.686 1.015 0.836 1.333 0.045 2.046 2.021 2.855 0.471 2.323 0.142 1.145 0.238 0.047 0.018 930 chr17 79867772 79877569 + 0 NA intron (NM_016538, intron 5 of 9) intron (NM_016538, intron 5 of 9) -3317 NM_001256433 5833 Hs.569843 NM_002861 ENSG00000185813 PCYT2 ET phosphate cytidylyltransferase 2, ethanolamine protein-coding 1.399 2.582 0.133 1.214 2.708 0.901 1.834 0.602 5.056 3.417 1.398 1.491 0.543 0.869 1.267 2.298 0.324 0.879 0.538 0.396 1.523 1.529 0.839 1.265 1.227 0.703 0.378 0.477 1.038 1.579 1.933 0.776 1.873 4.341 0.859 0.955 1.971 1.735 0.313 1.004 0.273 0.114 2001 chrX 40943095 40947793 + 0 NA intron (NM_001039591, intron 1 of 44) CpG-27874 556 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9, X-linked protein-coding 3.035 3.063 1.838 1.192 4.927 2.126 3.648 1.676 3.333 2.788 3.769 1.608 1.055 2.069 2.105 1.671 1.660 1.401 1.360 4.023 2.057 2.866 2.509 4.254 10.932 6.187 2.833 2.663 2.385 4.584 3.693 1.625 3.579 9.370 2.038 1.504 1.832 3.437 3.545 1.590 2.108 1.290 373 chr11 100639833 100651598 + 0 NA intron (NM_152432, intron 2 of 23) intron (NM_152432, intron 2 of 23) -87029 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.769 0.240 4.623 0.424 1.567 0.392 1.435 1.623 0.997 0.484 0.840 1.309 0.150 1.904 2.168 2.415 0.657 0.572 0.042 0.012 1.454 1.366 0.094 0.051 0.243 0.210 0.059 2.634 0.265 0.989 0.019 0.089 2.334 2.940 0.032 1.414 4.623 0.039 0.753 0.816 0.039 0.022 1011 chr19 36133199 36141099 + 0 NA Intergenic AluSx|SINE|Alu -1976 NM_001863 1340 Hs.431668 NM_001863 ENSG00000126267 COX6B1 COX6B|COXG|COXVIb1 cytochrome c oxidase subunit 6B1 protein-coding 2.241 2.257 0.775 0.814 2.686 1.541 1.446 0.456 3.098 1.943 1.420 0.681 0.894 1.033 1.615 1.212 1.308 1.891 0.887 0.909 0.987 0.807 1.927 2.209 3.116 2.342 1.254 0.507 1.212 5.691 8.462 2.668 1.111 2.149 1.586 1.238 1.322 3.271 0.748 1.075 0.364 0.186 883 chr17 49177155 49187228 + 0 NA intron (NM_001130527, intron 1 of 29) AluY|SINE|Alu 16035 NM_001130528 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 0.223 0.236 4.040 0.075 0.318 0.122 0.190 0.042 nan 0.150 0.232 0.043 0.213 0.076 0.421 0.434 0.048 0.187 0.049 0.068 0.588 0.302 0.227 0.149 0.219 0.053 0.061 0.085 0.356 0.394 0.394 0.063 0.137 0.231 0.287 0.036 0.180 0.155 0.233 0.030 0.029 0.020 1437 chr3 177237922 177247136 + 0 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 82820 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1.658 0.747 1.845 0.451 0.728 0.075 0.691 1.040 8.210 2.881 12.190 1.843 0.167 1.025 1.489 0.635 0.134 1.142 2.127 0.113 3.483 1.848 0.021 0.065 0.139 0.255 0.170 0.510 0.130 0.557 0.085 0.188 2.112 0.832 0.187 1.184 1.325 0.134 0.172 0.124 0.019 0.017 1898 chr8 128303808 128314029 + 0 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 52036 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 9.172 0.371 0.232 0.644 1.413 1.278 3.160 4.162 1.064 0.384 1.260 1.158 0.738 4.941 5.847 2.893 0.512 0.226 0.240 1.796 1.109 0.014 0.147 0.316 1.817 1.029 5.266 0.391 1.163 0.076 0.131 4.271 2.669 0.224 1.175 1.027 0.178 6.746 0.461 2.704 1.870 1842 chr8 37928074 37940700 + 0 NA Intergenic AluSx|SINE|Alu -28624 NM_001282272 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like histone lysine methyltransferase complex subunit protein-coding 5.763 0.304 1.516 0.015 0.142 0.126 0.169 0.687 0.199 0.069 0.142 0.670 0.028 0.234 0.758 0.631 0.114 0.432 0.124 0.077 0.198 0.101 0.035 0.081 1.750 0.165 0.111 0.116 0.145 0.254 0.118 0.029 0.328 0.084 0.022 0.020 0.530 0.501 0.289 0.139 0.023 0.020 1650 chr6 30874900 30895799 + 0 NA intron (NM_001167734, intron 9 of 29) intron (NM_001167734, intron 9 of 29) 3241 NM_001167734 57176 Hs.597526 NM_020442 ENSG00000137411 VARS2 COXPD20|VALRS|VARS2L|VARSL valyl-tRNA synthetase 2, mitochondrial protein-coding 1.451 0.979 0.347 0.599 1.214 1.185 0.686 1.961 1.076 0.558 1.206 0.571 0.230 0.671 0.742 3.012 0.271 0.560 0.417 0.443 0.950 0.746 0.351 0.782 0.896 1.032 0.637 0.854 0.748 0.910 1.360 0.920 0.619 0.904 0.803 0.333 0.495 1.378 0.597 0.343 0.251 0.150 1198 chr2 234728539 234767869 + 0 NA intron (NM_018410, intron 8 of 8) intron (NM_018410, intron 8 of 8) 15008 NM_001282962 55355 Hs.532968 NM_018410 ENSG00000123485 HJURP FAKTS|URLC9|hFLEG1 Holliday junction recognition protein protein-coding 0.485 0.583 0.106 0.130 0.533 0.490 0.443 0.129 0.812 0.225 0.382 0.290 0.393 0.163 0.646 0.739 0.127 2.051 0.160 0.207 0.667 0.546 0.317 2.392 0.553 0.638 0.286 0.170 0.624 3.988 0.939 0.293 0.389 0.409 0.855 0.224 0.233 0.870 0.278 0.521 0.696 0.476 1897 chr8 128217260 128241678 + 0 NA intron (NR_108049, intron 1 of 1) MER20|DNA|hAT-Charlie 2044 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 (non-protein coding) ncRNA 7.049 1.855 0.029 0.373 0.573 4.097 1.904 3.277 1.715 0.550 1.323 1.114 1.664 4.526 3.532 2.864 0.988 0.280 0.797 0.017 1.744 0.949 0.036 0.160 1.586 2.482 1.384 4.477 4.594 2.634 0.070 2.212 13.377 0.237 0.247 2.009 0.890 0.307 7.962 1.093 1.352 1.184 877 chr17 48103007 48147400 + 0 NA Intergenic Intergenic 7900 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 5.410 4.803 0.219 2.496 5.139 2.763 5.591 3.357 nan 5.772 4.216 2.971 4.152 3.958 3.559 6.458 2.122 2.112 0.266 0.044 4.215 4.610 0.675 0.273 8.235 8.018 3.198 3.259 7.385 3.903 6.284 2.346 2.598 5.070 2.859 1.451 1.381 3.017 3.330 3.779 3.952 3.204 103 chr1 145420511 145462752 + 0 NA 3' UTR (NM_006472, exon 8 of 8) 3' UTR (NM_006472, exon 8 of 8) 2284 NM_001313972 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 0.871 0.955 0.166 1.056 1.578 0.143 1.064 0.753 12.294 3.603 2.201 1.240 1.446 1.706 1.176 2.000 0.146 1.323 1.267 0.154 2.031 1.416 0.220 0.988 0.417 0.320 0.223 1.008 1.438 0.531 0.292 1.001 1.589 1.551 0.748 0.938 0.734 0.388 1.464 0.562 0.280 0.315 1798 chr7 100397812 100402687 + 0 NA TTS (NM_004444) TTS (NM_004444) 24894 NM_004444 2050 Hs.437008 NM_004444 ENSG00000196411 EPHB4 HTK|MYK1|TYRO11 EPH receptor B4 protein-coding 1.702 0.963 2.603 1.047 2.284 5.424 4.278 1.328 9.883 5.471 12.970 2.013 2.417 0.985 1.927 4.343 2.825 1.992 0.123 0.085 1.111 0.916 0.106 2.855 5.278 0.448 0.174 1.993 0.260 4.056 1.100 2.181 3.173 2.176 3.127 1.956 1.950 1.843 6.623 3.571 0.378 0.148 459 chr12 58143405 58151152 + 0 NA Intergenic Intergenic -1048 NM_000075 1019 Hs.95577 NM_000075 ENSG00000135446 CDK4 CMM3|PSK-J3 cyclin dependent kinase 4 protein-coding 2.833 2.012 0.392 0.586 1.561 0.671 1.797 0.815 3.850 2.417 2.421 0.908 0.578 0.921 1.489 1.182 0.369 3.341 1.864 2.056 1.251 1.120 1.292 1.642 1.584 2.076 1.226 6.672 3.276 2.722 3.076 2.637 1.233 2.039 13.587 0.978 0.656 2.535 1.040 0.679 1.383 0.891 907 chr17 74115098 74154826 + 0 NA intron (NM_001454, intron 2 of 2) intron (NM_001454, intron 2 of 2) -1675 NR_040017 100507218 Hs.654866 NR_040017 ENSG00000267128 RNF157-AS1 - RNF157 antisense RNA 1 ncRNA 0.190 0.190 0.098 0.124 0.294 0.041 0.457 0.347 11.385 1.636 1.065 0.228 0.059 0.321 0.283 0.324 0.126 0.188 1.309 0.082 0.131 0.075 0.156 0.320 0.261 0.060 0.037 0.244 0.213 0.573 0.237 0.190 0.344 0.251 0.079 0.332 0.135 0.871 0.077 0.035 0.032 0.023 643 chr15 67325552 67345920 + 0 NA intron (NR_135686, intron 2 of 5) AluJb|SINE|Alu 20784 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 0.843 1.730 0.403 0.765 0.892 2.060 0.815 1.937 2.349 0.761 0.839 1.061 0.466 1.494 1.166 1.871 1.247 1.870 0.241 0.021 1.314 0.833 0.757 3.195 3.695 0.704 0.398 0.769 0.767 3.410 1.555 2.472 1.799 1.184 1.413 1.556 0.789 4.520 0.736 0.921 0.393 0.145 1472 chr4 38309619 38339801 + 0 NA Intergenic Intergenic 200091 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 0.787 0.160 0.475 1.175 1.731 0.125 0.463 0.435 4.804 1.133 0.476 1.503 0.250 1.135 0.797 2.035 0.330 0.457 0.208 0.037 0.298 0.167 0.117 0.650 1.041 0.434 0.280 0.317 1.504 0.634 0.220 1.031 0.930 0.828 0.422 0.711 0.901 0.220 0.611 0.721 0.021 0.022 197 chr1 201974705 202102915 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -53219 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 1.824 0.320 0.870 0.442 1.169 0.479 1.709 1.501 7.913 2.248 2.347 0.851 0.119 2.327 2.255 1.580 1.032 1.286 0.586 0.050 1.076 0.678 0.089 0.538 0.292 0.141 0.096 1.390 0.263 3.289 0.069 0.926 2.807 2.680 1.067 1.233 3.393 0.136 0.507 0.143 0.045 0.024 148 chr1 154579026 154582765 + 0 NA promoter-TSS (NM_015841) promoter-TSS (NM_015841) -171 NM_001111 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 3.331 3.248 2.526 2.180 5.974 6.180 3.333 1.267 7.185 3.824 6.028 2.231 3.219 2.890 2.982 3.628 3.470 3.524 1.901 3.888 3.347 3.939 3.121 6.355 10.741 5.184 2.209 4.281 3.347 4.136 3.990 9.520 7.628 6.847 6.614 3.473 3.554 8.857 5.573 2.231 2.832 1.864 1877 chr8 99994045 100013142 + 0 NA Intergenic Intergenic -21901 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 0.414 0.119 3.144 0.030 0.134 0.046 0.178 0.100 0.311 0.206 0.410 0.062 0.024 0.034 0.666 0.052 0.301 0.078 0.072 0.022 0.015 0.011 0.073 0.050 0.048 0.022 0.028 0.016 0.140 0.090 0.093 0.066 0.254 0.079 0.077 0.083 0.508 0.033 0.073 0.012 0.081 0.021 1154 chr2 102076678 102093823 + 0 NA intron (NM_001145664, intron 1 of 11) intron (NM_001145664, intron 1 of 11) 5915 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 0.214 1.387 0.003 0.233 0.238 0.047 0.099 0.068 0.431 0.140 0.111 0.068 2.058 0.240 0.129 1.776 0.022 2.518 0.035 0.016 0.314 0.113 0.185 0.323 0.333 0.169 0.096 0.059 9.705 0.182 0.245 0.088 0.240 0.075 0.054 0.021 0.158 0.588 0.086 2.507 0.947 0.822 1829 chr8 11656850 11666374 + 0 NA intron (NM_001287747, intron 1 of 7) L2a|LINE|L2 1014 NM_001287748 2222 Hs.593928 NM_004462 ENSG00000079459 FDFT1 DGPT|ERG9|SQS|SS farnesyl-diphosphate farnesyltransferase 1 protein-coding 4.292 0.989 0.179 0.423 1.479 1.770 4.412 1.848 3.343 1.044 1.299 0.659 0.408 2.132 2.357 2.318 0.559 2.065 1.418 1.062 1.460 1.095 0.426 1.643 2.609 1.896 0.795 1.374 1.954 2.300 3.217 0.708 1.902 1.291 5.673 1.379 0.524 1.527 1.439 1.341 0.654 0.412 1052 chr19 45576962 45584952 + 0 NA Intergenic Intergenic -1111 NM_145288 162979 Hs.192237 NM_145288 ENSG00000170684 ZNF296 ZFP296|ZNF342 zinc finger protein 296 protein-coding 3.119 2.793 0.296 0.997 2.346 1.292 1.847 0.769 nan 1.798 1.954 0.824 1.181 1.667 1.886 1.550 1.870 1.994 0.747 0.451 1.369 1.229 2.377 1.800 2.930 1.390 0.917 0.433 0.860 3.605 7.695 1.749 1.239 2.206 1.554 1.318 1.874 2.863 1.965 1.047 0.686 0.438 1981 chr9 131444584 131453732 + 0 NA intron (NM_001248000, intron 1 of 7) AluJb|SINE|Alu 1793 NM_001248000 6418 Hs.436687 NM_003011 ENSG00000119335 SET 2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA SET nuclear proto-oncogene protein-coding 4.297 4.542 1.893 2.093 6.345 2.367 7.285 1.829 8.589 5.417 2.990 2.324 0.938 2.369 5.434 3.592 3.414 2.877 1.203 1.825 4.073 5.133 3.736 5.310 8.404 5.424 2.521 2.744 3.989 4.965 5.410 1.939 3.745 5.872 3.510 1.585 3.935 4.895 3.654 2.759 2.306 1.239 761 chr16 86661889 86670804 + 0 NA Intergenic Intergenic 54231 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 0.660 0.095 0.042 0.095 0.191 0.080 0.614 0.149 0.066 0.065 0.082 0.106 0.516 0.691 0.519 0.011 0.764 0.022 0.409 0.137 0.115 0.129 0.217 0.123 0.026 8.031 0.187 0.260 2.586 0.411 0.024 0.309 0.468 0.121 0.072 0.062 1.013 0.032 0.006 1190 chr2 219175581 219194324 + 0 NA intron (NM_015488, intron 2 of 9) intron (NM_015488, intron 2 of 9) -2950 NM_022572 25953 Hs.98475 NM_015488 ENSG00000127838 PNKD BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2 paroxysmal nonkinesigenic dyskinesia protein-coding 0.242 1.328 0.696 0.302 0.971 0.696 0.256 0.202 1.132 0.411 3.749 0.218 0.166 0.180 1.558 0.296 0.163 0.408 0.032 0.363 0.818 0.614 0.691 2.224 1.558 0.515 0.267 0.606 0.181 2.707 0.728 0.214 3.448 0.553 0.365 2.027 1.672 1.481 0.250 0.463 0.077 0.046 112 chr1 150506875 150511942 + 0 NA Intergenic Intergenic -12437 NM_019032 54507 Hs.516243 NM_019032 ENSG00000143382 ADAMTSL4 ADAMTSL-4|ECTOL2|TSRC1 ADAMTS like 4 protein-coding 0.268 1.113 0.025 0.673 1.276 0.327 0.134 2.169 2.964 1.023 0.336 0.116 0.209 0.392 0.378 0.904 0.566 0.175 0.052 0.054 0.464 0.157 2.204 0.223 1.325 8.814 3.504 0.319 0.310 0.774 0.916 0.198 1.042 0.713 0.253 0.629 0.263 1.400 0.716 6.177 3.732 458 chr12 58137897 58139896 + 0 NA 5' UTR (NM_005981, exon 1 of 6) 5' UTR (NM_005981, exon 1 of 6) 124 NM_005981 6302 Hs.632708 NM_005981 ENSG00000135452 TSPAN31 SAS tetraspanin 31 protein-coding 5.128 5.743 1.872 3.178 0.568 2.937 0.730 7.916 5.770 4.322 1.909 1.166 2.087 4.031 1.805 1.526 7.007 2.514 0.138 2.320 2.418 2.108 3.151 0.092 4.798 1.999 15.143 4.331 5.580 5.733 3.123 4.078 5.655 1.917 1.347 1.858 5.495 3.905 1.717 1.284 0.864 497 chr12 120962383 120993014 + 0 NA intron (NM_014868, intron 1 of 16) AluSx1|SINE|Alu 5565 NM_001330474 9921 Hs.442798 NM_014868 ENSG00000022840 RNF10 RIE2 ring finger protein 10 protein-coding 1.325 1.120 1.378 0.545 1.593 0.865 1.328 0.503 4.838 2.381 1.786 0.834 0.486 0.941 1.004 1.862 0.697 1.053 0.471 0.531 1.158 0.899 0.672 1.124 0.682 0.950 0.537 0.726 0.762 1.275 1.135 0.844 1.143 1.553 1.599 0.722 0.771 1.128 0.623 0.449 0.338 0.228 1636 chr6 21101596 21116839 + 0 NA intron (NM_017774, intron 13 of 15) L1MC5|LINE|L1 402906 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 0.281 0.240 0.049 0.238 1.199 0.310 0.623 0.291 6.090 3.703 4.150 1.476 0.400 0.552 0.305 0.932 0.043 0.912 0.050 0.482 0.999 0.303 0.044 0.059 0.157 0.155 0.113 0.258 0.236 0.075 0.210 0.068 0.172 0.473 0.111 0.400 0.352 0.142 0.800 0.480 0.880 1.134 1946 chr9 99178890 99184955 + 0 NA Intergenic Intergenic -1253 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 5.091 3.838 2.642 1.872 5.606 4.614 7.040 2.052 5.845 2.641 3.052 3.016 1.903 1.887 5.002 4.788 1.889 3.358 1.101 1.874 2.849 3.098 4.386 3.695 12.219 6.458 2.516 3.222 4.883 5.129 7.837 3.087 2.892 11.201 5.457 1.172 3.611 6.383 6.139 2.326 6.992 6.804 996 chr19 16434580 16454134 + 0 NA Intergenic Intergenic 8720 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 0.659 0.746 0.041 0.786 1.609 0.133 0.219 1.289 nan 0.336 0.529 0.554 1.214 1.317 0.560 4.027 0.059 1.105 0.097 0.113 1.726 1.661 1.269 0.168 3.091 1.707 0.841 0.108 3.242 0.749 3.076 0.113 0.171 1.826 3.388 0.236 0.262 0.751 1.032 2.267 2.218 1.928 312 chr11 47205714 47217172 + 0 NA Intergenic AluSq|SINE|Alu -3433 NM_001184974 29763 Hs.334639 NM_016223 ENSG00000165912 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 0.934 1.135 1.893 0.165 0.842 2.044 1.312 0.919 3.246 1.358 4.375 0.610 0.303 1.099 5.936 1.490 1.650 0.587 0.070 1.274 0.652 0.503 1.475 1.527 1.131 0.944 0.701 0.502 0.417 3.180 1.823 1.589 2.047 1.378 4.611 1.399 3.079 3.574 0.690 0.781 0.437 0.385 934 chr17 80792946 80852215 + 0 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -24649 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 0.475 0.508 0.353 0.789 1.950 0.023 0.889 0.715 nan 2.984 2.800 1.117 0.351 0.512 1.264 1.670 0.486 0.229 0.057 0.047 0.420 0.270 0.130 0.164 0.173 0.088 0.058 0.622 0.264 0.246 0.203 0.068 1.784 3.419 0.064 1.112 2.273 0.162 0.187 0.221 0.100 0.062 1179 chr2 202118604 202127100 + 0 NA promoter-TSS (NR_111983) promoter-TSS (NR_111983) 98 NM_001080125 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 2.059 2.679 0.066 1.496 3.754 7.084 3.466 1.578 8.588 3.474 5.153 2.375 2.044 3.498 3.678 5.991 1.476 3.878 0.283 0.276 4.303 4.617 1.013 7.097 4.225 3.713 1.324 3.010 3.957 2.875 2.413 2.699 2.271 2.964 11.731 1.805 0.799 1.137 3.133 4.667 1.287 0.672 728 chr16 31137368 31160255 + 0 NA Intergenic AluSz|SINE|Alu -1728 NM_002773 5652 Hs.75799 NM_002773 ENSG00000052344 PRSS8 CAP1|PROSTASIN protease, serine 8 protein-coding 3.752 0.995 1.247 0.695 1.507 0.224 1.644 0.643 5.825 2.402 4.756 0.543 0.144 1.949 2.333 0.868 0.886 0.343 0.268 0.115 0.515 0.405 0.358 0.478 0.692 0.625 0.300 1.450 0.298 0.726 0.570 0.457 3.202 2.656 0.323 0.642 2.429 0.722 0.322 0.183 0.171 0.098 1151 chr2 101468016 101523387 + 0 NA intron (NM_002518, intron 1 of 20) L1MA9|LINE|L1 59088 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 0.290 0.273 0.030 0.397 0.278 0.732 0.495 0.432 5.634 3.069 1.091 0.590 0.901 0.102 0.885 1.880 0.022 1.211 0.275 0.013 0.603 0.214 0.054 2.905 2.054 0.292 0.165 0.369 0.842 2.480 0.070 1.226 2.190 0.560 2.062 0.844 1.073 1.146 0.262 0.600 0.254 0.278 857 chr17 41139686 41152927 + 0 NA TTS (NM_001321381) TTS (NM_001321381) -4140 NM_000988 6155 Hs.514196 NM_000988 ENSG00000131469 RPL27 L27 ribosomal protein L27 protein-coding 1.438 1.489 0.174 0.925 2.194 0.909 1.552 1.065 nan 0.772 1.401 1.349 1.123 1.710 1.778 3.003 0.585 0.484 0.386 0.460 1.634 1.554 0.599 1.850 2.587 1.284 0.585 1.782 0.777 1.523 0.756 1.425 2.105 1.847 3.519 1.041 1.180 1.658 1.908 0.948 0.605 0.489 2005 chrX 152060117 152067803 + 0 NA Intergenic Intergenic -19026 NM_001178109 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 (LIM domain) protein-coding 4.166 0.152 0.298 1.207 1.745 0.107 0.749 1.469 9.826 4.530 1.358 2.497 0.599 2.466 2.104 6.242 0.399 0.072 0.029 0.054 0.695 0.454 0.143 0.106 3.785 2.664 0.936 3.641 0.206 0.445 0.073 0.039 1.602 1.996 2.017 1.433 2.914 0.823 0.370 0.378 0.127 0.113 1552 chr5 56782730 56801598 + 0 NA Intergenic HAL1|LINE|L1 -13528 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 1.341 0.374 0.279 0.541 0.654 0.077 1.797 2.677 1.683 0.351 1.744 1.379 1.307 2.026 0.843 3.995 0.475 3.589 0.095 2.270 1.502 0.043 0.141 0.375 0.373 0.169 0.880 1.162 0.285 0.724 0.143 0.285 0.616 1.771 0.540 0.097 0.403 0.912 0.823 1.284 1.583 1429 chr3 172253173 172265568 + 0 NA Intergenic AluSx|SINE|Alu -18073 NR_033994 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 1.674 0.261 0.249 0.275 0.316 1.862 0.376 0.256 1.734 0.361 4.178 0.567 0.107 0.641 1.950 0.834 1.288 0.973 0.089 0.022 1.252 0.640 2.035 0.101 0.483 0.209 0.120 0.167 0.189 0.223 0.381 0.140 2.096 0.231 0.253 0.326 2.224 0.275 0.582 0.073 0.033 0.029 723 chr16 30405402 30419987 + 0 NA Intergenic AluSx1|SINE|Alu 5954 NM_152652 197407 Hs.513501 NM_152652 ENSG00000180035 ZNF48 ZNF553 zinc finger protein 48 protein-coding 2.695 3.302 0.201 0.398 1.284 1.565 1.398 0.331 2.509 1.400 0.942 0.641 0.464 1.070 1.860 0.974 0.406 1.191 2.032 0.732 0.855 0.846 1.556 1.873 1.757 1.410 0.679 0.753 2.116 2.184 3.285 1.443 1.481 1.552 1.375 0.437 0.898 2.856 0.948 1.104 0.948 0.536 616 chr14 103619266 103629696 + 0 NA Intergenic L1MEc|LINE|L1 30884 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 0.208 0.498 0.071 0.311 0.475 0.089 0.229 0.222 3.207 0.413 0.324 1.902 0.124 0.250 5.990 0.803 1.323 0.096 0.040 0.053 0.971 0.447 0.049 1.202 0.199 0.094 0.048 0.126 0.144 1.350 0.262 0.469 2.719 0.436 0.097 0.703 1.836 0.095 0.442 0.254 0.017 0.041 384 chr11 128087399 128093963 + 0 NA Intergenic AluJb|SINE|Alu 301524 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 0.196 0.195 5.213 0.088 0.276 0.201 0.050 0.325 0.122 0.073 0.085 0.201 0.195 0.347 0.218 0.414 0.775 0.195 0.031 0.021 0.203 0.132 1.302 0.033 0.380 0.093 0.224 0.124 0.305 0.186 0.347 0.048 0.152 0.065 2.023 0.074 0.240 0.115 0.125 0.093 0.237 0.108 656 chr15 76601501 76613207 + 0 NA Intergenic Intergenic -3544 NM_000126 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein alpha subunit protein-coding 1.070 0.663 3.346 0.178 0.666 2.789 1.802 1.477 2.567 1.703 2.221 0.301 0.503 1.218 3.295 1.544 0.521 2.565 0.727 0.415 0.954 0.753 0.539 4.695 0.937 0.423 0.299 0.618 0.513 4.015 0.855 3.038 4.804 0.826 1.412 1.835 6.000 0.953 0.737 0.557 0.157 0.135 153 chr1 155009543 155026215 + 0 NA non-coding (NR_040773, exon 4 of 4) non-coding (NR_040773, exon 4 of 4) 5762 NR_040772 100505666 Hs.657533 NR_040772 DCST1-AS1 - DCST1 antisense RNA 1 ncRNA 1.151 1.374 0.082 0.933 2.359 0.529 1.574 1.139 4.925 1.240 2.068 0.925 0.876 1.691 1.226 1.189 0.385 0.736 0.771 0.382 1.602 1.300 0.471 1.802 2.247 1.001 0.507 0.747 0.580 1.621 0.926 3.737 5.154 1.832 1.562 1.095 1.909 3.631 1.307 0.284 0.570 0.360 340 chr11 65546271 65561189 + 0 NA promoter-TSS (NM_004561) promoter-TSS (NM_004561) 754 NR_031600 100302196 NR_031600 ENSG00000071894 MIR1234 MIRN1234|hsa-mir-1234 microRNA 1234 ncRNA 1.931 0.465 0.777 0.952 1.999 1.720 2.281 0.913 5.334 2.446 1.818 0.550 0.214 1.698 2.324 2.083 1.328 0.333 0.673 0.261 0.454 0.456 0.823 0.504 2.291 0.954 0.497 1.106 0.611 1.386 1.340 0.761 3.707 2.680 0.664 1.400 2.767 2.250 0.444 0.296 0.382 0.245 1458 chr4 200126 208231 + 0 NA Intergenic Intergenic -2211 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 0.054 0.057 0.092 1.861 4.579 0.016 0.117 0.058 1.421 0.273 0.139 0.506 0.015 0.295 0.010 0.131 0.177 0.056 0.075 0.359 0.072 0.010 0.059 0.136 0.067 0.058 0.453 0.777 0.110 0.141 0.078 0.083 4.051 0.065 0.121 0.031 0.028 0.290 0.014 0.013 1796 chr7 99677640 99689026 + 0 NA Intergenic Intergenic -3162 NM_001278284 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 1.421 2.384 0.234 0.882 1.707 1.354 3.307 1.223 3.322 2.017 3.476 1.153 1.353 1.601 1.915 2.839 0.517 2.196 1.855 1.048 0.652 0.522 1.160 2.355 5.916 5.105 2.033 1.243 2.840 1.619 5.081 1.553 1.393 2.262 2.023 1.396 1.564 2.970 1.466 0.840 4.440 3.351 1947 chr9 100457988 100487137 + 0 NA Intergenic Intergenic -12871 NR_027302 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 0.719 0.805 0.302 0.713 1.559 0.253 1.067 1.263 2.100 0.921 0.689 1.057 0.355 1.045 0.748 2.627 0.178 0.368 0.065 0.124 2.377 1.281 0.351 0.396 0.693 0.484 0.276 0.498 0.915 0.516 0.543 0.693 1.028 3.485 0.486 0.642 0.188 0.424 0.524 0.425 0.604 0.512 1667 chr6 35325940 35371283 + 0 NA intron (NM_001171819, intron 2 of 6) MIRb|SINE|MIR 38276 NM_006238 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 0.899 0.448 0.152 0.850 1.229 0.145 1.203 1.705 2.930 0.777 1.638 0.751 0.201 1.383 0.676 2.689 0.088 0.555 0.053 0.064 0.799 0.349 0.057 0.095 0.298 0.308 0.213 0.796 1.160 0.176 0.337 0.147 0.712 2.320 0.347 0.400 0.305 0.264 0.570 0.594 3.304 3.811 210 chr1 226287756 226321836 + 0 NA Intergenic AluSx1|SINE|Alu 54368 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 2.031 0.920 0.736 0.495 1.210 0.234 1.549 1.079 4.890 1.828 1.068 0.586 0.285 2.075 1.099 1.727 0.325 0.605 0.976 0.569 1.467 1.481 0.528 1.773 1.053 0.633 0.325 1.451 0.591 1.831 0.675 1.384 1.099 1.068 0.489 0.969 0.683 1.312 0.408 0.176 0.154 0.084 1534 chr5 34912745 34918663 + 0 NA promoter-TSS (NR_026591) promoter-TSS (NR_026591) 27 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 2.589 2.698 0.816 2.530 7.207 3.172 4.697 1.764 8.668 4.989 5.244 2.025 2.180 2.177 4.542 3.244 1.599 2.494 0.892 1.985 1.889 1.744 1.266 3.098 2.692 6.583 3.217 2.220 1.197 1.967 2.843 2.478 1.631 6.592 4.289 2.558 3.061 6.604 3.534 1.220 1.992 1.274 99 chr1 109808751 109827198 + 0 NA 3' UTR (NM_001408, exon 34 of 34) 3' UTR (NM_001408, exon 34 of 34) 7816 NM_032636 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 2.101 0.657 0.625 0.534 1.067 1.833 2.528 1.068 4.944 2.159 2.020 1.847 0.690 0.758 3.413 1.245 0.830 0.761 0.549 0.285 1.282 1.061 0.887 1.263 2.823 0.785 0.443 1.497 1.087 2.006 0.846 0.976 4.601 1.666 1.305 0.660 1.820 2.709 1.059 1.642 0.643 0.353 655 chr15 75741601 75749410 + 0 NA intron (NM_001145357, intron 1 of 20) CpG-8103 -1418 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 4.484 5.156 3.875 1.237 4.140 5.789 4.846 1.817 9.962 6.942 4.295 2.219 1.424 2.596 4.015 2.212 1.960 2.576 2.344 6.567 1.897 2.387 3.185 3.394 7.301 3.805 1.620 1.601 4.084 7.089 4.671 3.577 4.388 6.548 3.733 3.171 2.460 7.223 2.761 2.402 2.446 1.385 12 chr1 8065036 8090849 + 0 NA intron (NM_018948, intron 1 of 3) intron (NM_018948, intron 1 of 3) 8451 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 2.775 3.524 3.100 0.805 2.772 2.868 3.160 1.134 nan 3.957 2.822 1.172 1.341 1.787 2.483 1.818 1.334 1.994 1.361 0.124 2.298 2.245 0.373 1.518 2.730 0.836 0.500 1.153 1.646 2.023 2.668 1.426 2.838 2.411 4.624 0.961 1.704 3.039 1.278 1.244 0.272 0.178 1022 chr19 37956933 37961628 + 0 NA promoter-TSS (NM_001321992) promoter-TSS (NM_001321992) 606 NM_001300993 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 1.199 4.022 1.253 1.515 3.676 0.214 1.771 0.289 3.439 2.846 1.069 1.801 0.529 0.417 1.084 1.286 0.736 1.395 0.104 1.268 2.124 1.662 0.031 0.641 4.587 4.217 2.623 0.281 1.719 3.693 13.209 1.848 0.127 5.163 2.595 0.052 4.091 1.987 0.971 0.498 0.211 475 chr12 80971564 80993440 + 0 NA intron (NM_001145026, intron 23 of 41) MamGypLTR1a|LTR|Gypsy -118906 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 0.148 0.147 0.023 0.060 0.101 0.011 0.053 0.087 0.085 0.061 0.075 0.144 0.159 0.080 0.106 0.055 0.013 1.104 0.024 0.006 0.054 0.020 0.040 0.059 0.076 0.019 0.018 0.039 7.403 0.045 0.189 0.032 0.034 0.039 0.004 0.028 0.042 0.027 0.040 0.292 0.018 0.007 879 chr17 48249202 48301837 + 0 NA intron (NM_000088, intron 7 of 50) intron (NM_000088, intron 7 of 50) 3481 NM_000088 1277 Hs.172928 NM_000088 ENSG00000108821 COL1A1 EDSC|OI1|OI2|OI3|OI4 collagen type I alpha 1 chain protein-coding 0.574 2.282 0.240 0.641 0.902 0.316 1.156 0.946 nan 1.226 1.575 0.549 1.097 1.220 0.299 2.001 0.065 3.563 0.038 0.070 1.360 1.002 0.178 0.431 1.561 0.286 0.178 1.066 3.862 0.989 0.322 0.200 0.452 1.600 0.291 0.258 0.250 0.845 0.675 1.442 1.477 0.933 1568 chr5 92931423 92944712 + 0 NA Intergenic Intergenic 18427 NR_031754 100313887 NR_031754 ENSG00000113391 MIR2277 mir-2277 microRNA 2277 ncRNA 0.179 0.071 3.956 0.129 0.191 0.275 0.529 0.164 1.068 0.362 0.385 0.313 0.052 0.189 0.195 0.229 0.058 0.206 0.053 2.868 0.290 0.086 0.819 0.178 0.084 0.049 0.035 0.104 0.068 0.490 0.266 0.041 0.201 0.113 0.132 0.266 0.055 0.275 0.154 0.183 0.087 0.054 1364 chr3 11327942 11334402 + 0 NA intron (NM_001136031, intron 1 of 17) intron (NM_001136031, intron 1 of 17) 17162 NM_006395 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 0.613 6.252 0.077 2.667 4.976 4.472 4.045 2.348 1.358 0.349 0.667 2.788 2.575 5.080 5.775 4.317 1.404 5.778 0.109 3.562 3.323 0.353 4.531 9.562 8.822 3.217 1.031 8.703 1.280 2.981 0.206 3.297 1.302 4.808 0.835 0.179 6.519 4.333 3.996 0.045 0.055 447 chr12 54401305 54416251 + 0 NA Intergenic Intergenic -1858 NM_153693 3223 Hs.549040 NM_004503 ENSG00000197757 HOXC6 CP25|HHO.C8|HOX3|HOX3C homeobox C6 protein-coding 0.275 0.098 1.763 0.025 0.105 5.846 0.144 0.063 5.004 2.791 0.251 0.049 0.436 0.022 0.581 0.268 0.366 3.555 1.707 5.011 0.639 0.431 3.638 1.277 3.621 1.404 0.724 0.169 2.500 2.774 9.229 0.717 1.086 0.093 0.570 0.525 0.957 3.870 0.370 0.213 2.489 1.565 172 chr1 156709425 156723351 + 0 NA intron (NR_135008, intron 1 of 6) intron (NR_135008, intron 1 of 6) 4697 NM_001319188 3068 Hs.743948 NM_004494 ENSG00000143321 HDGF HMG1L2 hepatoma-derived growth factor protein-coding 6.040 6.656 2.635 2.436 7.507 14.630 6.189 3.277 9.750 5.709 5.408 5.013 4.949 7.695 5.393 4.758 3.232 4.869 5.873 4.700 5.505 7.145 3.664 9.158 12.496 7.589 2.917 3.357 6.170 6.822 5.240 2.288 4.427 5.719 6.222 5.115 3.054 14.402 6.723 3.628 5.653 3.556 290 chr11 819104 849266 + 0 NA intron (NM_139030, intron 1 of 7) AluSx1|SINE|Alu 1233 NM_139030 977 Hs.654379 NM_004357 ENSG00000177697 CD151 GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24 CD151 molecule (Raph blood group) protein-coding 3.390 4.287 0.746 0.781 2.265 2.023 2.470 1.034 6.080 4.291 5.339 0.670 1.152 1.741 1.486 3.399 0.595 1.223 1.610 1.036 1.994 2.585 2.572 2.776 5.867 5.354 2.284 0.935 2.506 4.921 4.756 1.404 2.110 3.539 3.872 1.420 2.021 5.047 1.342 2.782 1.699 1.118 79 chr1 70776279 70799364 + 0 NA intron (NM_030816, intron 3 of 12) AluSx1|SINE|Alu 32596 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 0.894 0.204 0.102 0.444 1.495 0.777 1.923 0.762 2.617 0.990 2.423 0.782 0.215 1.155 0.581 1.301 0.294 0.222 0.039 0.036 0.753 0.501 0.098 0.090 0.243 0.227 0.128 2.459 0.147 0.159 0.264 0.072 0.223 0.918 1.694 0.121 1.078 0.099 0.356 0.061 0.102 0.085 608 chr14 100703752 100707348 + 0 NA 5' UTR (NM_003403, exon 1 of 5) 5' UTR (NM_003403, exon 1 of 5) 448 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 7.656 4.786 3.971 0.480 3.610 8.067 6.502 1.581 12.966 10.372 12.018 1.364 2.064 2.027 3.134 2.958 2.779 2.133 3.014 5.603 4.790 7.200 2.974 5.091 7.985 7.790 3.622 3.652 6.213 8.533 14.710 3.335 8.885 4.445 6.514 1.966 4.839 9.936 4.878 8.000 3.360 1.564 992 chr19 13943337 13977566 + 0 NA Intergenic MIR|SINE|MIR -12978 NR_029495 407010 NR_029495 ENSG00000207980 MIR23A MIRN23A|hsa-mir-23a|miRNA23A|mir-23a microRNA 23a ncRNA 5.398 3.332 2.590 1.539 3.482 7.822 3.976 1.754 nan 3.369 2.000 1.836 1.601 2.359 3.974 3.700 2.437 3.002 0.797 2.731 4.151 5.274 3.777 4.808 7.692 5.454 2.092 2.490 10.282 4.962 8.614 2.907 3.293 6.673 3.420 1.617 4.578 8.272 4.938 3.257 2.901 1.936 1163 chr2 121667658 121674749 + 0 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 116336 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 2.919 3.114 0.187 0.059 0.882 1.951 1.982 0.963 0.195 0.251 0.020 1.641 2.603 0.162 3.125 0.136 0.924 0.060 4.784 4.988 0.498 3.489 5.525 2.048 1.178 0.943 9.294 5.983 0.179 0.401 2.116 0.081 0.433 1.333 0.236 0.566 0.599 0.431 5.691 3.694 684 chr16 1792683 1798447 + 0 NA intron (NM_001040439, intron 5 of 30) intron (NM_001040439, intron 5 of 30) 10579 NR_036138 100423012 NR_036138 ENSG00000265820 MIR3177 mir-3177 microRNA 3177 ncRNA 0.137 3.922 1.808 1.377 3.483 1.187 0.047 0.523 0.184 0.322 2.238 2.627 0.019 3.723 0.312 2.412 0.113 0.052 0.144 2.575 3.122 0.366 0.112 10.043 3.365 1.025 0.080 0.208 0.570 0.062 0.028 0.081 8.500 0.127 0.044 1.132 0.284 0.737 3.397 1.738 1.394 1203 chr2 240185380 240207789 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -30573 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 0.218 2.341 0.019 0.879 1.429 3.179 0.279 0.373 3.914 0.986 0.576 0.749 1.326 0.524 1.139 3.907 0.004 1.913 0.040 0.120 3.125 2.947 0.098 7.539 0.671 0.327 0.188 0.208 0.970 2.814 0.181 1.089 2.820 1.282 1.978 1.752 0.479 0.318 1.298 1.756 2.654 2.078 611 chr14 102536431 102556638 + 0 NA TTS (NM_005348) TTS (NM_005348) 6978 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 2.712 0.941 1.490 0.131 0.626 2.413 1.226 1.017 2.482 1.645 1.876 0.991 0.972 0.611 4.033 0.945 0.572 0.801 0.591 1.096 1.369 1.741 0.404 1.060 1.535 1.910 0.972 0.870 1.112 1.362 4.084 0.502 1.967 0.621 1.118 0.806 1.114 1.687 1.207 2.566 0.833 0.652 758 chr16 81038054 81042667 + 0 NA 5' UTR (NM_018455, exon 1 of 7) 5' UTR (NM_018455, exon 1 of 7) 142 NM_020188 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 5.423 6.796 0.908 2.581 5.127 8.156 5.039 1.118 3.533 2.114 3.434 2.597 2.203 1.940 3.976 2.615 2.809 4.461 2.410 3.238 4.562 4.669 2.926 2.788 6.362 7.445 3.500 2.209 4.521 4.582 5.729 4.104 3.490 9.582 4.467 1.729 3.082 4.500 3.148 2.349 2.691 1.964 420 chr12 19839784 19846218 + 0 NA Intergenic MER50|LTR|ERV1 249486 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 0.397 0.133 0.114 0.253 0.067 0.126 0.049 0.191 0.102 0.077 0.023 0.074 0.153 0.015 0.318 0.014 0.187 0.030 0.021 0.033 0.011 0.011 0.094 0.057 0.015 0.012 0.232 0.076 0.044 4.011 1.279 0.201 0.043 3.317 0.116 0.035 0.073 0.011 0.045 0.016 270 chr10 112255208 112262416 + 0 NA intron (NM_004419, intron 1 of 3) intron (NM_004419, intron 1 of 3) 1187 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 2.819 6.086 0.034 1.229 2.862 2.234 6.012 2.186 3.284 3.143 1.137 1.385 1.818 2.635 3.350 5.090 1.270 2.962 1.925 0.441 2.341 2.686 1.941 3.049 7.975 6.719 2.279 1.082 2.282 5.557 5.328 2.248 3.361 4.357 6.998 1.720 0.709 2.584 2.143 2.232 1.997 1.608 1903 chr8 129085809 129093257 + 0 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 28135 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 1.163 0.850 0.017 1.188 2.347 0.633 2.128 2.382 1.704 1.041 0.228 0.824 0.891 1.952 1.568 2.687 0.426 32.131 0.040 0.038 1.466 0.708 0.141 0.830 5.743 0.210 0.188 0.880 0.746 0.378 0.966 0.107 0.302 3.034 5.424 0.033 0.588 1.649 14.099 0.512 0.432 0.254 198 chr1 203113488 203157645 + 0 NA 3' UTR (NM_000674, exon 4 of 4) 3' UTR (NM_000674, exon 4 of 4) 9376 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 0.056 0.291 0.053 1.033 1.442 0.079 0.619 0.711 4.366 1.222 0.818 0.410 0.518 1.491 0.949 2.112 0.140 0.147 0.039 0.034 3.352 2.959 0.094 0.110 2.172 0.061 0.050 0.885 0.768 0.149 0.060 0.061 0.745 0.738 2.588 0.155 0.356 1.022 1.044 0.145 2.999 3.019 46 chr1 33884200 33939300 + 0 NA Intergenic Intergenic -26482 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 0.238 0.405 0.028 0.586 0.613 0.085 0.410 0.358 4.716 1.210 0.413 0.608 1.097 0.450 0.374 3.832 0.080 0.512 0.114 0.108 0.973 0.581 0.114 0.204 0.743 0.103 0.079 0.246 1.569 0.142 1.131 0.113 0.174 0.239 2.477 0.093 0.109 0.564 0.368 0.349 0.454 0.852 810 chr17 27061770 27081920 + 0 NA intron (NM_004295, intron 1 of 6) intron (NM_004295, intron 1 of 6) 822 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 2.557 2.577 2.111 1.023 3.251 2.934 3.287 1.346 8.593 5.138 4.377 1.291 0.930 1.537 2.734 1.988 1.995 0.460 0.621 0.694 1.348 1.298 1.243 1.720 3.686 2.498 1.268 1.357 1.088 3.564 1.213 1.005 2.253 4.471 0.956 2.182 3.706 4.021 1.372 0.843 1.041 0.617 350 chr11 67068769 67086817 + 0 NA exon (NM_017857, exon 13 of 14) exon (NM_017857, exon 13 of 14) 6874 NM_017857 54961 Hs.29173 NM_017857 ENSG00000172830 SSH3 SSH3L slingshot protein phosphatase 3 protein-coding 1.724 1.291 0.841 0.638 1.884 1.889 0.832 0.837 9.536 5.093 5.218 1.441 0.419 1.801 3.905 1.538 1.735 2.370 0.851 0.292 1.013 0.835 0.761 1.064 3.587 1.343 0.808 1.271 0.969 2.976 1.571 2.100 4.734 1.839 1.805 2.716 5.313 6.134 1.520 0.785 0.341 0.168 279 chr10 126832253 126852263 + 0 NA intron (NM_001290214, intron 1 of 10) intron (NM_001290214, intron 1 of 10) 5429 NM_001321013 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 2.360 3.350 0.900 0.807 3.409 1.444 3.972 1.297 9.026 6.063 2.953 0.542 0.823 2.666 1.711 4.368 1.128 1.494 2.516 1.782 1.965 2.275 1.297 2.642 3.614 1.805 0.833 1.445 1.402 3.544 1.646 2.208 3.169 5.913 4.127 2.558 1.088 2.185 1.739 1.317 0.400 0.237 194 chr1 197922451 197929834 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR 39625 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 0.450 0.031 0.026 0.057 0.026 0.120 0.028 0.218 0.077 1.027 0.020 0.177 0.182 0.058 0.039 0.126 0.065 0.037 1.017 0.527 0.030 0.139 0.125 0.008 0.011 0.333 0.190 0.221 0.058 4.298 0.099 0.068 0.025 0.033 0.044 0.048 0.022 0.008 0.007 888 chr17 58155301 58170294 + 0 NA intron (NR_030732, intron 1 of 2) intron (NR_030732, intron 1 of 2) 3031 NR_030732 645638 Hs.463652 NR_030732 ENSG00000261040 WFDC21P LNCDC|linc-DC|lnc-DC WAP four-disulfide core domain 21, pseudogene pseudo 0.179 2.415 0.332 0.526 1.049 1.228 1.334 0.812 2.987 1.482 0.751 0.448 1.464 1.698 0.612 1.801 0.767 1.670 0.126 0.268 2.955 2.390 1.711 0.705 1.379 1.508 0.706 0.393 2.720 1.418 2.016 0.495 0.495 0.700 2.100 0.626 0.637 0.962 2.578 0.426 1.676 0.956 476 chr12 89508888 89523395 + 0 NA Intergenic Intergenic -102672 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 0.222 0.125 0.082 0.223 0.244 0.140 0.244 0.174 2.260 0.465 0.521 0.175 0.146 0.278 0.425 0.349 0.238 0.312 0.069 0.038 0.234 0.047 0.040 0.066 0.268 0.023 0.027 0.042 0.220 0.208 0.127 2.816 0.935 0.109 0.127 0.508 0.719 0.232 0.073 0.068 0.012 0.003 1879 chr8 102216363 102219505 + 0 NA promoter-TSS (NM_001042510) promoter-TSS (NM_001042510) 26 NM_001267708 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 3.772 8.201 4.942 1.477 6.052 5.118 8.905 3.619 11.117 9.317 5.417 2.336 1.921 3.189 6.172 5.956 4.966 4.803 6.018 3.174 5.226 7.399 3.495 3.347 6.931 9.445 4.109 5.552 8.876 7.431 11.125 6.221 4.580 11.816 4.094 2.579 5.585 6.336 5.086 4.061 4.076 3.343 1644 chr6 28317064 28325899 + 0 NA intron (NM_001242894, intron 2 of 6) L2|LINE|L2 491 NM_145909 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 1.078 6.957 1.352 1.180 2.457 5.711 0.506 0.422 2.077 1.487 1.582 1.066 0.642 0.664 1.799 2.837 0.877 3.758 0.753 0.422 2.002 1.834 0.224 8.424 0.854 1.124 0.699 0.219 1.079 1.272 2.601 1.422 1.859 2.577 7.690 1.841 0.479 1.650 1.386 1.721 0.235 0.075 1010 chr19 35756990 35761305 + 0 NA promoter-TSS (NM_003367) promoter-TSS (NM_003367) -734 NM_003367 7392 Hs.454534 NM_003367 ENSG00000105698 USF2 FIP|bHLHb12 upstream transcription factor 2, c-fos interacting protein-coding 4.915 7.205 3.148 1.146 5.672 5.759 4.757 0.709 10.198 6.195 5.467 0.608 1.562 1.111 4.171 1.801 3.168 2.925 2.667 2.312 3.463 5.955 5.498 2.738 6.010 5.518 2.906 2.402 3.371 13.142 15.400 6.072 3.550 4.456 3.196 2.112 4.124 7.537 2.278 2.006 1.455 0.829 237 chr10 25178670 25202123 + 0 NA intron (NM_020200, intron 3 of 8) AluJr|SINE|Alu 51177 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 0.466 0.949 0.021 0.642 0.450 0.407 0.341 0.505 0.156 0.041 0.121 0.503 0.963 0.550 0.177 1.317 0.248 2.444 0.030 0.018 0.922 0.466 0.104 0.594 0.179 0.261 0.326 0.411 0.689 0.849 0.600 0.610 0.476 0.247 1.135 0.495 0.154 0.322 1.016 0.704 0.957 0.860 1671 chr6 40979738 40997259 + 0 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 2521 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 0.057 0.292 0.039 0.259 0.286 0.371 0.262 0.199 0.801 0.270 2.032 0.399 0.377 0.206 0.126 1.104 0.016 0.226 0.446 0.032 0.893 0.451 0.033 0.581 0.165 0.065 0.053 0.118 0.268 0.534 0.106 2.084 0.242 0.611 2.364 0.049 0.127 0.463 0.786 0.408 0.108 0.035 803 chr17 16904339 16991269 + 0 NA intron (NM_201274, intron 1 of 23) MIRc|SINE|MIR 1730 NM_015134 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 0.829 0.716 1.435 0.581 1.292 1.301 1.032 0.926 6.508 3.171 3.410 1.055 0.973 1.266 1.936 2.319 0.920 1.299 0.128 0.085 0.666 0.560 0.142 0.364 1.869 0.944 0.515 1.701 0.736 3.225 0.322 0.346 1.421 2.011 1.849 1.523 2.091 0.285 0.976 1.233 0.487 0.389 426 chr12 26303276 26308451 + 0 NA Intergenic L2a|LINE|L2 -27860 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 1.607 1.109 0.024 0.878 1.863 0.378 1.948 0.918 1.965 0.793 0.880 1.449 6.883 0.878 1.915 2.056 6.220 0.027 1.725 0.671 0.056 0.095 0.694 0.174 0.121 0.433 3.678 0.173 1.102 1.018 0.374 1.577 3.443 0.218 0.224 0.461 0.758 3.089 0.612 0.379 1174 chr2 178102182 178132864 + 0 NA intron (NM_001313902, intron 1 of 3) intron (NM_001313902, intron 1 of 3) 3215 NR_036075 100422824 NR_036075 ENSG00000265396 MIR3128 mir-3128 microRNA 3128 ncRNA 2.300 2.424 1.950 1.339 3.585 2.999 2.844 0.684 6.802 5.581 2.978 1.033 1.390 1.681 3.937 2.237 1.336 1.639 0.659 1.165 2.182 2.382 0.937 2.508 2.650 1.720 0.714 1.759 1.783 3.052 2.014 1.448 2.274 2.783 4.307 1.135 1.195 2.703 1.976 1.690 1.496 1.089 1480 chr4 75397233 75413416 + 0 NA Intergenic Intergenic -75267 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 3.525 0.507 0.131 1.001 2.194 0.397 2.690 2.914 2.191 1.234 2.198 2.500 1.385 2.387 0.202 1.619 0.170 0.500 0.086 0.094 1.372 0.570 0.027 0.340 0.744 0.045 0.053 1.808 0.706 0.717 0.106 0.785 0.476 2.100 0.343 0.432 0.144 0.136 0.559 0.198 0.043 0.025 1225 chr20 30127052 30202484 + 0 NA Intergenic Intergenic -3702 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 3.363 2.430 3.134 1.452 2.777 5.204 2.249 1.190 nan 2.739 3.821 1.937 1.549 1.785 2.156 2.057 3.130 14.113 1.394 0.452 4.436 4.425 1.675 4.737 4.491 1.015 0.490 1.543 12.309 6.958 3.948 2.045 4.079 4.091 3.404 2.360 5.356 4.152 1.985 2.451 0.581 0.470 725 chr16 30536571 30548163 + 0 NA 3' UTR (NM_001305018, exon 3 of 3) 3' UTR (NM_001305018, exon 3 of 3) 3924 NM_001305019 65988 Hs.592032 NM_023931 ENSG00000169955 ZNF747 - zinc finger protein 747 protein-coding 4.053 3.926 2.129 0.969 2.058 3.803 3.543 0.774 4.958 3.109 3.721 1.716 0.723 2.666 4.662 1.246 1.920 1.527 4.976 1.865 1.796 2.308 2.108 3.050 3.591 2.081 0.953 1.856 1.293 3.507 5.058 4.164 5.210 2.352 3.971 1.321 2.374 4.494 1.954 1.463 1.336 0.929 1325 chr22 21298367 21313067 + 0 NA 3' UTR (NM_005207, exon 3 of 3) 3' UTR (NM_005207, exon 3 of 3) -5663 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 1.066 1.081 1.370 0.903 2.279 0.613 3.091 1.220 nan 1.084 0.921 0.276 0.634 1.130 0.782 1.442 1.091 0.528 1.065 0.151 0.632 0.708 1.318 0.934 1.321 0.936 0.403 0.923 0.177 1.694 2.481 1.016 1.051 1.731 2.712 0.491 0.366 1.209 1.203 0.041 0.683 0.392 730 chr16 51570277 51576112 + 0 NA Intergenic Intergenic -223236 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 0.160 2.255 0.040 0.032 0.065 0.427 0.116 2.767 1.094 0.037 0.100 2.719 0.055 0.057 0.868 0.017 2.484 0.956 0.008 1.268 0.979 0.012 3.175 3.757 0.103 0.013 0.105 0.142 2.972 0.048 5.164 2.532 0.037 0.047 0.333 0.112 2.955 0.965 1.541 1.372 2.011 1693 chr6 87861058 87866748 + 0 NA Intergenic Intergenic -1366 NM_015021 23036 Hs.485892 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 2.245 3.045 1.961 1.666 3.785 0.775 2.161 0.730 6.069 5.165 1.891 1.237 1.136 2.383 1.357 1.364 1.765 2.102 1.310 6.955 1.329 1.484 0.982 1.469 4.500 1.916 0.754 1.388 1.875 1.888 9.102 1.838 1.286 4.315 3.780 0.950 0.917 2.233 1.548 2.380 1.862 1.395 67 chr1 55881589 55900802 + 0 NA Intergenic Intergenic 199881 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.218 1.270 0.155 1.254 1.342 2.555 0.930 1.954 nan 0.267 0.639 1.279 0.909 2.161 0.393 5.859 0.104 1.409 0.052 0.007 2.067 1.498 0.686 0.728 2.949 1.689 0.819 2.449 1.718 1.839 0.637 0.447 0.993 1.239 3.481 0.891 1.382 1.380 1.423 1.437 1.145 0.921 433 chr12 31880297 31916843 + 0 NA Intergenic L1M4|LINE|L1 -16462 NR_103522 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 2.132 1.926 0.440 3.119 4.572 1.864 2.693 1.491 5.022 2.453 1.725 2.289 1.804 2.015 0.659 3.864 0.533 3.548 0.228 0.137 2.179 1.665 0.230 1.698 3.473 3.486 1.646 1.808 2.311 2.034 4.263 0.885 1.588 5.731 1.481 1.168 0.968 2.037 2.011 4.099 0.731 0.673 1914 chr8 144651528 144662782 + 0 NA intron (NM_145201, intron 12 of 12) intron (NM_145201, intron 12 of 12) -2227 NM_001100878 642475 Hs.531406 NM_001100878 ENSG00000204839 MROH6 C8orf73 maestro heat like repeat family member 6 protein-coding 8.295 1.584 0.978 1.737 4.863 3.795 6.133 3.428 12.818 7.757 3.131 3.844 0.641 2.893 5.911 4.554 2.430 0.353 1.316 0.257 0.911 0.797 0.675 0.345 4.434 1.833 0.740 1.340 0.392 0.997 1.077 0.377 2.301 6.070 0.198 2.588 2.225 3.019 0.727 0.335 0.133 0.063 583 chr14 62211175 62232867 + 0 NA Intergenic Intergenic -4206 NR_144368 105370526 Hs.661638 NR_144368 LOC105370526 - uncharacterized LOC105370526 ncRNA 4.881 1.080 2.434 0.254 1.106 3.623 1.031 0.804 1.274 0.752 0.730 1.015 0.376 1.588 2.733 1.006 0.322 0.757 0.176 0.204 1.619 1.066 0.196 0.554 2.097 1.432 0.713 0.696 0.922 0.777 1.338 0.546 1.019 0.872 2.810 0.435 0.302 1.113 1.293 1.970 1.637 1.124 161 chr1 155209661 155215849 + 0 NA intron (NM_001005741, intron 1 of 11) MIRb|SINE|MIR -1686 NM_000157 2629 Hs.282997 NM_000157 ENSG00000177628 GBA GBA1|GCB|GLUC glucosylceramidase beta protein-coding 1.903 2.857 0.601 1.599 3.093 3.508 2.657 1.564 3.732 0.859 1.682 1.501 2.644 1.892 2.123 2.587 0.528 2.002 1.848 2.990 2.453 2.062 1.254 3.886 2.530 2.311 1.098 1.154 2.244 2.387 3.642 8.726 1.650 2.588 4.058 1.045 1.517 7.062 2.746 1.432 1.889 1.227 1863 chr8 72739575 72780062 + 0 NA intron (NR_033652, intron 2 of 4) intron (NR_033652, intron 2 of 4) -3087 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 0.131 1.782 0.029 0.286 0.212 2.364 0.126 0.057 0.184 0.142 0.084 0.242 0.265 0.200 0.166 0.669 0.012 3.880 0.031 0.007 1.299 0.760 0.024 1.308 0.342 0.058 0.052 0.025 2.538 0.909 0.309 0.074 0.483 0.082 0.052 0.483 0.045 0.091 0.213 0.354 0.020 0.015 1456 chr3 193739438 193913465 + 0 NA Intergenic Intergenic -27480 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 0.941 0.274 0.234 0.313 0.568 0.303 0.838 0.349 nan 1.398 0.759 0.345 0.215 0.363 1.392 0.817 0.365 0.420 0.400 0.179 0.830 0.686 0.193 0.291 0.642 0.450 0.195 0.312 0.408 0.650 0.685 0.863 1.286 1.172 0.438 0.301 0.465 1.067 0.436 0.311 0.180 0.138 1544 chr5 45015338 45061400 + 0 NA Intergenic Intergenic 229342 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 0.105 0.104 0.011 0.029 0.155 0.039 0.121 0.025 0.214 0.126 0.112 0.054 0.186 0.026 0.111 0.094 0.019 0.233 0.039 3.459 0.050 0.019 0.003 0.070 0.038 0.016 0.020 0.025 0.139 0.027 0.043 0.040 0.040 0.113 0.030 0.011 0.050 0.033 0.043 0.028 0.019 0.022 61 chr1 45195016 45206618 + 0 NA Intergenic Intergenic -4673 NM_001297655 11004 Hs.720061 NM_006845 ENSG00000142945 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 2.224 3.559 1.852 0.981 2.309 2.035 2.636 0.889 4.546 1.676 1.251 1.277 0.673 1.362 3.760 2.261 0.967 2.359 0.646 0.957 1.274 1.231 1.439 2.019 5.873 1.607 0.775 2.224 3.194 1.705 3.202 1.603 1.904 2.873 2.925 0.604 4.695 2.414 1.463 1.167 1.424 1.066 688 chr16 2261267 2267008 + 0 NA intron (NM_001042371, intron 1 of 1) CpG 685 NM_001042371 283871 Hs.442634 NM_001042371 ENSG00000184207 PGP AUM|G3PP|PGPase phosphoglycolate phosphatase protein-coding 3.435 4.121 1.029 0.965 3.222 3.501 2.822 0.902 5.302 2.895 1.910 1.502 0.772 1.198 3.716 2.851 1.234 1.784 0.700 0.554 2.120 2.408 1.968 4.777 2.440 2.353 1.155 1.257 2.140 3.224 2.491 4.874 3.305 4.369 2.432 1.197 2.341 4.810 3.324 0.905 1.846 0.949 1546 chr5 52280117 52288965 + 0 NA promoter-TSS (NM_002203) promoter-TSS (NM_002203) -615 NR_073104 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 3.218 1.547 1.348 1.376 2.276 1.176 6.240 5.784 7.126 5.918 4.451 1.175 1.197 3.322 2.087 4.476 0.691 1.529 0.194 1.800 1.225 0.076 0.140 1.647 2.025 0.914 2.132 0.384 1.463 1.381 0.715 1.779 1.083 0.818 1.301 0.816 2.239 0.662 0.749 0.391 0.603 1875 chr8 90992628 90997306 + 0 NA exon (NM_002485, exon 2 of 16) exon (NM_002485, exon 2 of 16) 1932 NM_002485 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 1.958 3.737 2.043 1.145 3.948 5.181 4.175 2.076 2.805 1.839 2.636 2.393 5.611 2.677 2.768 2.657 0.899 1.935 1.224 1.129 1.466 2.256 1.467 2.318 4.035 4.424 1.769 0.721 4.474 3.891 4.466 2.272 2.596 4.380 4.586 1.783 2.015 2.263 3.971 1.381 1.428 1.206 733 chr16 52578090 52614581 + 0 NA intron (NR_033920, intron 3 of 3) L2a|LINE|L2 -14621 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 0.667 0.094 0.010 0.005 0.020 0.027 0.259 0.009 2.222 0.420 0.746 0.413 0.013 1.217 0.057 0.049 0.008 0.031 3.345 0.008 0.044 0.022 0.004 0.081 0.077 0.030 0.030 1.382 0.115 1.276 0.033 1.976 3.716 0.039 0.043 0.389 0.269 0.037 0.121 0.008 0.011 0.008 1181 chr2 208025454 208033095 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 1466 NM_003709 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 6.064 6.781 1.948 1.873 5.716 6.072 7.468 2.603 10.372 7.689 7.629 3.370 2.339 3.197 2.404 4.143 1.526 2.323 1.141 4.101 6.194 0.308 1.815 7.078 2.022 1.174 5.041 5.485 4.405 5.153 1.027 1.533 5.515 2.926 1.173 3.689 4.302 3.078 4.743 1.548 1.133 1986 chr9 139733934 139746409 + 0 NA exon (NM_001080482, exon 1 of 1) exon (NM_001080482, exon 1 of 1) 1304 NM_001080482 389813 Hs.495485 NM_001080482 ENSG00000232434 C9orf172 - chromosome 9 open reading frame 172 protein-coding 1.430 4.288 0.303 0.835 2.631 1.181 4.408 1.100 5.780 3.905 1.365 1.857 1.017 0.864 1.695 1.230 1.264 1.121 1.355 0.920 1.286 1.801 1.664 2.965 3.962 1.285 0.706 1.268 1.219 4.065 4.616 1.515 1.882 2.079 1.453 1.050 2.685 5.968 2.295 1.805 1.322 0.647 1823 chr7 149995952 150024143 + 0 NA intron (NM_001164458, intron 1 of 7) LTR7C|LTR|ERV1 -9978 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C protein-coding 1.494 0.645 0.191 0.816 1.434 0.235 1.204 0.553 0.876 0.467 0.840 0.681 0.217 1.616 4.830 0.969 0.352 4.307 0.656 0.035 2.522 2.379 0.457 0.166 0.326 0.456 0.216 0.382 0.623 0.202 0.073 0.514 0.786 0.792 0.069 0.746 0.601 0.753 1.144 0.087 0.110 0.056 1196 chr2 234381841 234405119 + 0 NA intron (NM_018218, intron 29 of 30) L1M5|LINE|L1 80756 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 0.767 0.795 0.637 0.400 0.887 0.950 1.846 1.029 1.871 1.380 5.682 0.350 0.745 2.179 1.437 1.884 0.029 3.236 0.164 0.012 4.365 4.832 0.174 1.070 1.453 0.215 0.117 0.692 0.198 2.225 0.094 0.129 1.666 0.315 0.314 0.116 0.960 0.373 1.002 1.514 1.185 0.565 1375 chr3 48506302 48515448 + 0 NA exon (NM_001272082, exon 3 of 4) exon (NM_001272082, exon 3 of 4) 3867 NM_001272083 51246 Hs.414579 NM_016479 ENSG00000164054 SHISA5 SCOTIN shisa family member 5 protein-coding 2.047 3.728 1.380 1.105 2.552 3.290 2.443 1.004 4.579 2.121 1.046 1.532 1.265 1.300 2.454 2.112 1.548 1.784 1.827 0.858 1.317 1.653 1.190 3.926 3.186 3.728 1.562 1.606 2.869 3.196 2.911 1.839 1.586 4.482 1.910 1.834 1.326 2.155 2.722 1.800 2.676 2.050 1593 chr5 151117439 151138705 + 0 NA intron (NM_004045, intron 2 of 3) intron (NM_004045, intron 2 of 3) 10138 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 3.137 1.038 0.155 0.447 0.544 0.782 0.873 1.220 0.547 0.245 0.232 0.330 1.171 1.121 0.676 1.464 0.293 1.295 0.051 0.095 0.610 0.340 0.860 0.366 3.342 4.969 1.904 0.385 1.651 0.435 2.514 0.193 0.262 0.446 0.410 0.621 0.159 0.837 1.121 1.084 7.492 7.688 1320 chr22 19924538 19932102 + 0 NA promoter-TSS (NM_000754) promoter-TSS (NM_000754) -943 NM_000754 1312 Hs.370408 NM_000754 ENSG00000093010 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 4.111 6.923 5.304 1.352 3.518 3.851 3.977 1.838 nan 3.338 6.750 0.695 0.873 1.799 1.264 0.816 1.552 2.436 0.874 1.586 1.008 0.791 6.127 2.579 2.629 3.595 1.506 0.986 1.440 2.529 4.570 1.013 3.632 2.415 2.931 1.650 1.602 3.750 2.251 1.227 2.526 1.640 851 chr17 40471646 40491365 + 0 NA intron (NM_003150, intron 13 of 23) intron (NM_003150, intron 13 of 23) 41431 NM_001288719 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 0.259 0.672 0.296 1.269 2.232 7.843 0.554 0.957 nan 0.078 0.247 0.101 1.241 1.522 1.372 1.816 0.623 0.127 0.044 0.098 1.587 1.480 0.653 0.394 6.949 0.828 0.422 0.385 0.906 1.305 0.650 0.140 0.249 1.086 0.950 0.087 2.672 3.393 1.219 0.568 2.500 2.039 481 chr12 96586736 96594879 + 0 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 2647 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 6.534 3.135 0.107 1.582 4.431 1.858 6.979 3.471 5.571 2.798 3.142 2.409 2.811 4.524 4.114 4.191 1.735 2.932 0.532 0.476 2.511 2.706 1.401 2.269 7.621 8.189 3.066 3.885 12.057 2.960 5.641 1.046 2.441 3.401 7.076 0.974 0.902 4.716 2.216 2.816 9.102 10.222 424 chr12 24712824 24717109 + 0 NA intron (NM_001261414, intron 1 of 16) CpG 558 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding 0.234 0.015 0.222 0.606 0.059 0.526 0.074 1.347 0.679 0.116 3.311 9.009 0.026 0.067 0.409 0.044 0.087 0.237 0.179 0.034 0.051 0.114 0.108 0.238 0.417 0.019 5.861 0.323 2.921 0.204 0.061 0.578 0.043 0.123 0.039 0.864 0.019 0.337 0.013 104 chr1 145494363 145509166 + 0 NA TTS (NM_153713) TTS (NM_153713) -5793 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 0.914 1.074 0.510 0.564 1.295 1.165 0.745 0.946 20.929 12.415 3.460 1.066 1.326 0.975 1.206 2.642 0.310 0.833 1.153 0.670 1.376 1.129 0.473 1.592 0.994 1.169 0.669 1.059 0.744 1.034 0.952 0.362 2.003 1.714 1.857 0.843 1.289 1.473 1.338 0.552 0.693 0.515 1742 chr7 17636771 17649752 + 0 NA Intergenic L1PA16|LINE|L1 -44728 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 0.631 0.677 0.173 0.527 0.705 0.330 1.802 0.809 11.703 6.935 9.209 0.930 0.984 0.731 0.608 0.625 0.523 0.594 0.073 0.011 3.733 2.503 0.040 0.283 0.633 0.265 0.102 1.635 0.879 0.251 0.044 1.572 2.385 0.982 0.214 1.347 0.871 0.116 2.357 0.492 0.018 0.008 619 chr14 105259862 105272860 + 0 NA Intergenic Intergenic -1157 NM_001137601 100128927 Hs.170853 NM_001137601 ENSG00000179627 ZBTB42 LCCS6|ZNF925 zinc finger and BTB domain containing 42 protein-coding 1.296 1.274 0.455 0.220 0.637 2.093 0.664 0.576 5.723 2.048 3.476 0.679 0.372 0.541 0.901 0.892 0.433 0.563 0.711 1.032 1.120 0.741 0.679 1.330 1.028 1.297 0.999 0.621 0.398 2.561 6.073 0.936 4.142 1.075 1.076 0.563 2.298 3.581 0.547 1.448 0.369 0.222 33 chr1 27017255 27034937 + 0 NA intron (NM_139135, intron 1 of 19) intron (NM_139135, intron 1 of 19) 3574 NM_006015 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 4.402 4.146 4.643 0.847 3.324 4.949 4.480 1.502 8.548 4.966 4.041 1.639 1.173 2.933 3.000 3.055 2.230 2.940 2.053 4.534 2.143 2.367 2.865 3.293 6.900 2.909 1.396 1.746 3.251 3.306 4.447 1.896 2.555 3.930 8.708 1.510 3.337 6.138 2.102 2.713 1.502 1.018 1876 chr8 99951275 99961860 + 0 NA promoter-TSS (NM_001142462) promoter-TSS (NM_001142462) -64 NM_053001 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 3.243 0.994 3.877 0.724 1.879 0.640 5.494 1.193 2.438 0.888 1.177 0.345 1.426 0.826 3.148 4.030 1.328 2.006 0.368 2.683 0.621 0.356 0.834 0.620 2.541 1.100 0.767 0.174 0.838 1.795 3.047 1.108 2.176 1.362 1.696 0.382 1.536 2.321 0.269 0.231 0.435 0.135 1709 chr6 133003835 133011669 + 0 NA intron (NM_004666, intron 5 of 6) HAL1|LINE|L1 27442 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 0.325 0.050 0.008 0.437 0.629 0.025 0.216 0.511 0.326 0.081 0.036 0.038 0.089 5.768 0.241 0.301 0.012 0.094 0.035 0.382 0.162 0.049 0.873 0.346 0.386 0.217 0.152 0.187 0.172 0.333 0.091 0.036 0.732 0.063 0.110 0.010 0.007 0.013 748 chr16 67589168 67598866 + 0 NA Intergenic AluSp|SINE|Alu -2293 NM_006565 10664 Hs.368367 NM_006565 ENSG00000102974 CTCF MRD21 CCCTC-binding factor protein-coding 2.904 3.839 0.723 1.201 3.829 4.939 2.579 0.555 3.093 1.370 2.777 1.360 1.245 0.984 2.962 1.883 1.784 1.773 1.994 2.108 1.880 2.539 2.476 2.975 5.604 4.184 2.025 0.916 1.720 3.555 2.808 2.062 3.895 4.422 2.499 1.225 1.678 3.119 1.877 1.656 1.462 1.113 429 chr12 27855625 27865130 + 0 NA Intergenic Intergenic -3329 NM_001190864 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding 1.351 1.822 0.267 0.852 2.031 1.023 1.302 0.445 2.403 1.565 1.591 0.720 3.940 0.932 1.001 1.387 0.506 1.678 0.400 0.452 0.943 0.863 0.297 1.009 0.823 0.777 0.386 0.706 1.914 1.416 2.032 0.681 0.740 1.804 1.517 0.668 0.760 2.503 0.665 1.741 0.442 0.309 1133 chr2 61686521 61699792 + 0 NA intron (NM_014709, intron 1 of 79) L1MA5A|LINE|L1 4693 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 1.426 2.227 0.569 0.757 2.847 3.067 1.714 0.446 4.165 3.189 1.704 0.727 0.908 0.796 1.656 1.669 1.109 2.699 0.468 1.617 1.416 1.681 1.311 2.701 3.362 3.825 1.721 0.745 1.627 3.331 2.910 1.528 1.435 3.153 1.472 1.344 1.089 3.038 1.196 1.140 1.020 0.706 1766 chr7 64897679 64946562 + 0 NA Intergenic L1MB1|LINE|L1 83408 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 0.060 0.071 0.019 0.449 0.652 0.054 0.211 0.127 8.462 2.736 0.782 1.035 0.161 0.313 0.144 1.247 0.010 0.585 0.049 0.026 0.124 0.071 0.087 0.071 0.177 0.044 0.022 0.348 0.186 0.047 0.332 0.013 0.031 0.411 0.064 0.058 0.042 0.030 0.448 0.086 0.097 0.052 178 chr1 161007584 161017068 + 0 NA intron (NM_207005, intron 4 of 10) intron (NM_207005, intron 4 of 10) 2401 NM_001276373 7391 Hs.414880 NM_007122 ENSG00000158773 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 2.601 1.665 1.536 0.961 2.199 3.779 2.132 1.402 5.061 3.154 2.918 1.954 2.079 2.464 2.163 2.306 0.764 1.235 2.857 0.745 2.067 2.090 0.866 2.161 1.924 1.468 0.814 1.370 1.361 1.622 2.191 1.231 1.521 2.269 1.650 1.405 0.988 4.399 1.787 0.919 0.814 0.681 343 chr11 65767594 65771378 + 0 NA promoter-TSS (NM_001143985) promoter-TSS (NM_001143985) -64 NM_001143985 8815 Hs.433759 NM_003860 ENSG00000175334 BANF1 BAF|BCRP1|D14S1460|NGPS barrier to autointegration factor 1 protein-coding 5.493 5.174 1.785 1.290 4.099 3.969 3.184 1.918 7.251 5.851 4.370 2.690 1.871 5.109 6.443 4.433 2.320 3.042 2.005 2.064 3.798 4.529 2.377 3.807 14.583 9.172 4.058 2.691 6.327 4.849 4.697 1.812 3.286 3.386 8.224 2.256 3.476 4.988 3.695 3.263 2.232 1.730 985 chr19 10303753 10326161 + 0 NA Intergenic AluSx|SINE|Alu -9146 NM_001379 1786 Hs.202672 NM_001379 ENSG00000130816 DNMT1 ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI DNA methyltransferase 1 protein-coding 1.542 0.600 0.454 0.727 1.757 0.970 1.551 0.686 nan 0.978 2.686 0.626 0.534 1.054 1.962 0.890 0.728 0.378 0.222 0.413 1.391 1.105 0.454 0.579 1.129 0.956 0.282 2.129 1.042 0.403 1.076 0.490 0.441 3.280 0.892 0.522 0.387 1.125 1.659 0.488 0.357 0.267 1192 chr2 219756798 219763997 + 0 NA Intergenic Intergenic 15142 NM_025216 80326 Hs.121540 NM_025216 ENSG00000135925 WNT10A OODD|SSPS|STHAG4 Wnt family member 10A protein-coding 4.911 2.485 7.973 1.553 2.889 0.095 0.255 2.987 1.142 1.417 0.650 1.890 0.254 2.314 4.046 2.957 0.226 0.372 1.017 0.057 0.605 0.281 0.338 0.208 6.928 0.360 0.422 3.795 0.514 0.306 2.581 0.153 0.258 4.217 0.194 0.253 0.219 5.229 0.791 1.480 0.216 0.113 1767 chr7 64963620 64980662 + 0 NA Intergenic Intergenic 133429 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 0.096 0.104 0.036 0.014 0.205 0.026 0.127 0.017 7.671 4.123 0.752 0.249 0.035 0.058 0.112 0.050 0.018 0.178 0.053 0.310 0.061 0.042 0.100 0.067 0.140 0.078 0.059 0.107 0.141 0.119 0.391 0.060 0.077 0.235 0.037 0.044 0.137 0.214 0.069 0.048 0.034 0.021 1701 chr6 113667916 113690560 + 0 NA Intergenic Intergenic 292039 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 0.641 0.470 0.036 1.115 1.388 0.172 1.701 1.195 6.283 2.144 1.680 1.311 1.233 0.988 1.793 2.073 0.157 3.985 0.036 0.031 1.531 0.939 0.045 0.045 1.354 1.255 0.568 1.819 3.465 0.280 0.806 0.025 0.165 0.773 0.176 0.448 0.120 0.079 0.847 1.698 1.846 1.685 144 chr1 153929412 153942068 + 0 NA promoter-TSS (NR_106795) promoter-TSS (NR_106795) 104 NM_001271957 27173 Hs.7854 NM_014437 ENSG00000143570 SLC39A1 ZIP1|ZIRTL solute carrier family 39 member 1 protein-coding 3.097 3.930 3.373 2.194 5.343 4.218 3.415 2.500 31.030 24.942 4.313 2.669 3.164 4.197 4.029 3.228 1.787 2.113 2.651 1.766 2.980 3.218 2.204 4.495 7.266 4.828 2.099 2.488 1.960 3.369 3.457 11.241 11.042 5.887 4.205 2.729 7.136 11.478 4.300 2.293 2.011 1.126 250 chr10 49808628 49823664 + 0 NA intron (NR_045675, intron 2 of 10) MER5B|DNA|hAT-Charlie -2970 NM_001347735 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 0.430 0.371 0.018 0.215 0.223 0.084 0.798 0.883 0.137 0.065 0.104 0.870 0.972 0.230 1.565 0.006 0.521 0.033 0.009 0.672 0.419 0.025 0.202 1.336 1.635 0.696 0.147 5.857 0.114 0.526 0.094 0.085 0.085 1.972 0.186 0.022 0.268 0.511 0.573 0.230 0.337 530 chr13 73958248 74011991 + 0 NA Intergenic Intergenic -153262 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.928 0.109 0.247 0.254 0.330 0.074 0.267 0.492 8.567 2.690 0.779 0.646 0.085 0.769 0.611 0.414 0.091 0.290 0.037 0.016 0.668 0.355 0.034 0.081 0.168 0.048 0.039 0.545 0.141 0.264 0.072 0.101 0.682 0.150 0.040 0.755 0.523 0.024 0.160 0.116 0.004 0.006 791 chr17 7208953 7220026 + 0 NA intron (NM_001970, intron 3 of 5) intron (NM_001970, intron 3 of 5) 2795 NM_001143762 1984 Hs.534314 NM_001970 ENSG00000132507 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 2.181 2.439 1.825 0.903 3.789 3.860 2.303 0.503 4.464 3.615 4.404 0.849 0.923 1.705 2.979 1.675 1.318 1.230 1.825 1.666 0.973 1.423 1.208 3.594 5.554 2.673 1.042 2.364 2.589 4.978 4.004 1.681 1.563 5.746 5.169 2.244 1.836 6.177 3.116 1.543 2.169 1.105 245 chr10 36777193 36789851 + 0 NA Intergenic Intergenic -631263 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 0.051 0.043 0.043 0.075 0.033 0.284 0.038 0.200 0.077 0.056 0.187 0.025 0.046 0.202 0.069 0.058 0.024 0.022 0.005 0.012 0.023 1.755 0.073 0.024 0.019 0.030 5.322 0.553 0.061 0.019 0.053 0.028 0.059 0.033 0.081 0.031 0.241 0.018 0.016 1718 chr6 154279422 154321545 + 0 NA Intergenic L1P1|LINE|L1 -31148 NM_001145281 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 0.113 0.060 0.330 0.103 0.234 0.042 0.091 0.020 nan 0.828 0.072 0.153 0.025 0.067 0.092 0.098 0.002 0.151 0.026 0.023 0.020 0.015 0.016 0.060 0.050 0.020 0.024 0.217 0.069 0.050 0.095 0.008 0.019 0.225 0.026 0.061 0.061 0.022 0.021 0.034 0.021 0.011 1447 chr3 185814885 185828684 + 0 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 5117 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 1.292 1.227 0.701 0.480 1.627 1.114 1.376 0.585 3.246 2.051 1.317 0.649 0.907 0.822 1.482 1.794 0.360 1.335 0.500 0.883 3.037 2.127 0.897 1.114 2.916 1.976 0.994 0.395 2.198 1.431 1.866 1.451 1.166 1.700 3.700 0.680 0.114 0.738 0.872 0.592 0.893 0.531 1489 chr4 111529323 111546369 + 0 NA TTS (NM_001204397) TTS (NM_001204397) 6408 NM_000325 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.076 0.974 0.028 2.418 5.608 0.074 0.370 0.516 0.781 0.259 0.232 0.263 0.151 0.103 0.186 0.437 0.011 0.387 0.311 0.033 0.041 0.029 0.068 0.107 0.135 0.128 0.060 0.265 0.352 0.143 0.443 0.570 0.211 3.727 0.109 0.115 0.026 0.786 0.023 0.009 0.010 515 chr13 24141138 24156391 + 0 NA intron (NM_001204459, intron 1 of 7) intron (NM_001204459, intron 1 of 7) 4255 NM_148957 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 0.550 0.092 0.004 0.113 0.228 0.120 0.071 0.014 0.750 0.511 0.268 0.018 0.085 0.057 0.139 0.090 0.316 0.100 2.542 0.042 0.028 0.070 1.124 0.078 0.127 0.127 0.086 0.203 0.323 0.163 0.091 0.143 0.307 0.324 0.071 0.200 1.321 0.088 0.149 5.771 8.744 1617 chr6 7040817 7068312 + 0 NA Intergenic AluJo|SINE|Alu -53266 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 0.680 0.771 0.070 0.892 1.695 0.090 1.306 0.884 6.847 2.642 2.384 1.090 0.413 1.643 1.322 2.057 0.434 0.438 0.328 0.045 1.994 1.781 0.066 0.458 0.308 0.173 0.187 0.711 0.822 0.471 0.448 0.523 2.374 2.136 2.305 1.400 0.597 0.296 0.647 0.564 0.057 0.052 240 chr10 32248850 32255440 + 0 NA Intergenic L1M1|LINE|L1 -34341 NM_018287 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 0.371 0.247 0.365 0.200 1.217 0.229 0.891 1.896 1.773 0.459 1.948 0.245 0.090 0.258 1.856 0.445 0.309 0.207 0.042 0.673 0.253 0.090 0.272 2.661 0.110 0.166 3.231 0.151 0.769 0.130 3.335 6.608 1.721 0.128 2.030 1.216 0.381 1.063 0.353 0.163 0.168 1284 chr20 62666605 62700070 + 0 NA Intergenic Intergenic -2358 NM_018419 54345 Hs.8619 NM_018419 ENSG00000203883 SOX18 HLTRS|HLTS SRY-box 18 protein-coding 0.808 1.537 0.122 0.313 0.604 1.278 0.583 0.402 4.151 1.855 0.816 0.852 0.434 0.377 0.899 1.006 0.367 0.566 0.611 0.440 0.706 0.696 0.599 1.065 2.205 0.856 0.571 0.165 0.454 1.166 1.335 0.592 1.410 1.338 1.035 0.705 0.474 4.915 1.160 0.483 0.255 0.140 762 chr16 86695462 86703310 + 0 NA Intergenic AluSx4|SINE|Alu 56179 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LOC101928614 - uncharacterized LOC101928614 ncRNA 2.972 2.325 0.016 1.592 1.381 9.325 1.581 0.940 1.309 0.606 0.073 2.622 2.532 2.259 1.220 4.661 0.108 5.699 0.050 5.366 5.118 0.009 1.333 5.773 6.474 2.394 2.498 5.970 2.598 2.708 5.186 1.485 0.515 4.235 1.699 0.558 0.243 1.755 3.265 3.499 3.299 820 chr17 33306697 33308931 + 0 NA intron (NM_013975, intron 1 of 19) CpG 297 NM_002311 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2 DNA ligase 3 protein-coding 6.940 9.208 1.167 1.606 9.345 13.414 7.795 2.505 6.592 5.905 6.801 1.836 2.554 4.099 4.355 3.811 2.778 2.971 1.601 5.840 3.314 6.501 5.687 9.234 9.977 5.683 2.238 2.709 9.074 9.954 4.710 5.090 5.584 15.103 5.033 3.365 6.957 10.714 5.813 3.046 4.989 3.139 188 chr1 173833237 173840280 + 0 NA promoter-TSS (NR_003942) promoter-TSS (NR_003942) 125 NR_002579 619498 NR_002579 SNORD74 SNORD74A|U74|Z18 small nucleolar RNA, C/D box 74 snoRNA 3.260 2.437 1.176 1.487 3.564 1.257 2.706 2.322 4.011 3.864 3.496 2.176 0.974 4.251 4.065 3.087 1.515 2.391 0.681 2.047 2.705 2.751 1.925 6.283 3.469 3.875 1.620 1.730 1.877 2.378 2.625 2.328 3.011 3.360 4.357 1.421 2.125 2.505 2.081 1.101 1.742 1.237 847 chr17 38593934 38620440 + 0 NA intron (NM_001552, intron 1 of 3) intron (NM_001552, intron 1 of 3) 7511 NM_001552 3487 Hs.462998 NM_001552 ENSG00000141753 IGFBP4 BP-4|HT29-IGFBP|IBP4|IGFBP-4 insulin like growth factor binding protein 4 protein-coding 1.451 2.796 0.016 0.222 0.504 2.034 1.487 0.674 1.731 0.668 0.559 0.144 0.758 0.961 0.330 0.586 0.163 0.361 0.045 0.047 1.380 1.406 0.167 0.747 1.360 0.676 0.343 0.191 0.724 4.483 0.258 1.560 1.362 0.402 0.669 0.475 0.527 0.861 0.216 0.606 0.133 0.091 1976 chr9 130597181 130603791 + 0 NA intron (NM_001114753, intron 2 of 14) MER115|DNA|hAT-Tip100 8960 NM_001278138 2022 Hs.76753 NM_000118 ENSG00000106991 ENG END|HHT1|ORW1 endoglin protein-coding 0.162 2.940 0.028 2.273 3.981 0.029 3.472 0.928 0.946 0.257 0.174 3.182 3.223 1.699 0.894 2.948 0.028 0.085 0.015 0.043 1.286 0.917 0.079 0.146 0.153 0.273 0.106 1.835 0.907 0.222 0.247 0.024 0.171 0.859 1.439 0.113 0.133 2.358 0.012 0.035 0.008 1197 chr2 234464100 234475893 + 0 NA intron (NM_018218, intron 2 of 30) L1PA3|LINE|L1 4240 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 0.910 1.578 0.347 0.547 1.230 1.196 1.027 0.311 1.524 1.579 3.070 0.520 0.831 0.661 4.086 1.780 0.231 4.052 0.450 0.408 4.157 4.248 0.497 5.543 0.976 1.177 0.451 0.567 1.060 3.134 1.136 0.727 0.719 0.624 1.341 0.862 0.815 1.058 0.914 0.949 0.788 0.757 1362 chr3 11236679 11244813 + 0 NA intron (NM_001098212, intron 1 of 1) AluSg|SINE|Alu -26923 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 0.141 1.146 0.008 0.885 1.458 0.121 0.962 1.810 0.824 0.236 0.107 0.293 0.331 0.873 0.106 1.843 0.421 0.333 0.013 0.034 0.674 0.471 0.071 0.125 4.980 5.708 2.604 0.650 0.453 0.540 0.357 0.019 0.352 0.726 0.917 0.573 0.091 1.068 0.793 0.331 0.007 0.019 1550 chr5 56656642 56667190 + 0 NA Intergenic Intergenic 116720 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 0.605 0.111 0.049 0.503 0.437 0.383 2.484 3.412 2.201 0.846 1.728 1.440 1.031 1.671 1.329 5.162 0.027 0.802 0.038 0.026 2.145 1.081 0.021 0.112 0.071 0.320 0.260 0.926 0.075 0.276 0.121 0.103 0.883 0.826 1.787 0.696 0.189 0.223 0.610 0.541 3.388 3.848 1647 chr6 30581966 30587555 + 0 NA promoter-TSS (NM_014046).5 promoter-TSS (NM_014046).5 324 NR_072994 5514 Hs.106019 NM_002714 ENSG00000204569 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1 regulatory subunit 10 protein-coding 6.029 5.570 3.393 1.389 4.802 4.979 3.937 3.201 8.223 7.438 8.363 2.934 2.327 3.166 7.433 6.209 1.923 3.751 3.427 5.080 5.344 6.214 1.085 6.359 5.777 6.186 2.310 3.442 8.858 2.836 7.267 7.042 4.235 5.760 6.978 2.625 3.952 5.517 4.970 3.650 2.349 2.155 1164 chr2 157185329 157204085 + 0 NA Intergenic Intergenic -5420 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 2.811 2.722 0.575 0.841 2.067 6.266 3.143 0.975 6.591 4.025 3.446 1.214 0.736 2.191 0.810 1.642 0.588 1.664 2.250 1.678 1.475 1.727 1.365 4.852 2.314 1.740 0.708 1.571 1.125 3.613 3.711 2.625 4.804 3.917 2.944 2.302 2.641 4.945 1.001 1.315 0.614 0.380 922 chr17 78761428 78769284 + 0 NA intron (NM_001163034, intron 7 of 29) intron (NM_001163034, intron 7 of 29) 14076 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 0.850 3.750 2.053 3.344 5.102 2.705 2.191 3.897 1.014 0.550 4.772 4.287 2.813 0.765 8.152 0.194 4.862 0.778 0.036 4.366 3.452 1.070 4.627 7.901 0.998 0.404 1.659 11.528 2.830 3.366 1.322 3.003 2.132 3.404 0.704 1.330 1.363 2.173 5.705 2.287 2.760 1941 chr9 74975323 74982161 + 0 NA intron (NM_001102420, intron 1 of 6) intron (NM_001102420, intron 1 of 6) 766 NM_001278244 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 4.128 5.069 1.905 1.610 5.866 3.128 7.504 1.525 6.586 7.075 4.311 2.485 1.956 2.120 6.134 4.537 1.917 3.447 1.305 1.838 4.734 7.013 2.479 5.142 6.517 4.523 1.881 3.605 4.469 4.531 5.235 2.944 5.086 7.492 3.012 1.736 3.268 4.124 3.115 2.763 3.377 2.736 1606 chr5 176725904 176732130 + 0 NA intron (NR_109790, intron 5 of 6) intron (NR_109790, intron 5 of 6) 1728 NR_109790 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 2.457 2.634 6.309 0.579 1.771 1.893 2.380 1.570 4.312 3.065 1.792 1.107 1.201 2.963 1.602 1.940 1.574 1.418 0.744 0.428 1.510 1.353 1.657 2.071 2.901 4.408 2.241 1.081 3.317 2.418 3.723 1.549 1.321 4.146 2.401 1.101 1.554 3.182 1.026 1.811 1.403 0.865 3 chr1 1092250 1102766 + 0 NA Intergenic Intergenic -4976 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 7.772 0.949 1.938 1.153 3.403 0.090 4.426 1.224 9.650 4.425 2.580 2.215 0.741 2.893 4.774 1.806 0.237 0.436 3.863 0.026 0.421 0.310 0.168 0.675 0.591 0.683 0.407 1.164 0.532 1.003 0.546 1.061 2.586 3.674 0.053 1.771 0.986 0.469 0.677 0.121 1.057 0.677 1956 chr9 110028291 110050981 + 0 NA Intergenic Intergenic -5881 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 0.962 1.380 1.594 0.609 2.028 0.645 2.600 0.425 nan 1.678 1.779 0.561 0.405 0.438 2.830 1.449 1.160 0.565 0.281 0.414 0.637 0.623 1.434 1.371 2.010 1.246 0.556 0.914 0.977 1.193 1.482 0.504 1.469 2.869 0.649 0.422 0.978 1.008 0.968 0.495 1.328 0.740 767 chr16 88263440 88280805 + 0 NA Intergenic Intergenic 44235 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 1.096 0.864 0.200 1.365 2.049 1.928 0.203 0.225 2.334 1.083 0.490 2.757 0.781 0.453 1.708 2.204 0.639 4.934 0.046 0.016 1.185 0.696 0.179 2.645 4.136 1.973 1.231 0.926 0.661 1.088 6.581 0.688 1.661 2.348 1.515 0.246 1.447 4.318 0.902 2.533 0.554 0.723 568 chr14 38008954 38037847 + 0 NA Intergenic L1MEc|LINE|L1 40925 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 0.270 0.156 1.158 0.046 0.193 0.031 0.137 0.091 6.253 2.956 4.598 0.202 0.069 0.090 0.663 0.137 0.017 0.297 0.079 0.077 0.261 0.100 0.013 1.353 0.041 0.025 0.013 0.183 0.080 0.287 0.037 0.544 1.240 0.245 0.141 0.212 1.150 0.040 0.217 0.034 0.010 0.009