PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_AD9.GO0043565.bed hg19 -size given -wig ./Calu3_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H1755_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H1819_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2009_K27Ac_S2_MACS14_bam_model_swig_treat_afterfiting_all.scaled.wig ./H2009_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2030_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2291_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H2347_S3_model_swig_treat_afterfiting_all.scaled.wig ./H3122_K27Ac_bt2_model_p5_swig_treat_afterfiting_all.scaled.wig ./H3122_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H3255_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./H358_S4_model_p5_swig_treat_afterfiting_all.scaled.wig ./HCC1171_S1_model_swig_treat_afterfiting_all.scaled.wig ./HCC78_S5_model_swig_treat_afterfiting_all.scaled.wig ./PC9_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./h1373_ab4729_chip_1124_S9_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h1650_ab4729_chip_0525_0714_15c_S23_p5_swig_treat_afterfiting_all.scaled.wig ./h1792_ab4729_chip_0113_S13_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h1833_ab4729_chip_0610_0714_15c_S25_p5_swig_treat_afterfiting_all.scaled.wig ./h2077_2_ab4729_chip_0525_0714_15c_S21_p5_swig_treat_afterfiting_all.scaled.wig ./h2228_ab4729_chip_0113_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h2228_ab4729_chip_0221_S31_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h2286_ab4729_chip_1124_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./h460_ab4729_chip_0221_S15_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc366_ab4729_chip_0221_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc44_ab4729_chip_0221_S29_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc44_ab4729_chip_1202_S5_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./hcc827_ab4729_chip_0221_S27_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./sklu1_ab4729_chip_0221_S17_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_a549__1_k27ac_hg_S31-p5-swig_treat_afterfiting_all.scaled.wig ./st_hw_h1299__1_k27ac_hg_S29-p5-swig_treat_afterfiting_all.scaled.wig ./st_hw_h1395_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h1437_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2009_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2087_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2122_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2126_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h23__1_k27ac_hg_S30-p5-swig_treat_afterfiting_all.scaled.wig ./ts_hw_h1975_ab4729_chip_0331_12c_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_hcc461_ab4729_chip_0331_12c_S2_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_sw1573_ab4729_chip_0331_12c_S4_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_sw1573_ab4729_chip_0414_13c_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type ./Calu3_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1755_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1819_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2009_K27Ac_S2_MACS14_bam_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2009_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2030_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2291_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2347_S3_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H3122_K27Ac_bt2_model_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H3122_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H3255_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H358_S4_model_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC1171_S1_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC78_S5_model_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./PC9_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1373_ab4729_chip_1124_S9_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1650_ab4729_chip_0525_0714_15c_S23_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1792_ab4729_chip_0113_S13_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h1833_ab4729_chip_0610_0714_15c_S25_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2077_2_ab4729_chip_0525_0714_15c_S21_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2228_ab4729_chip_0113_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2228_ab4729_chip_0221_S31_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h2286_ab4729_chip_1124_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h460_ab4729_chip_0221_S15_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc366_ab4729_chip_0221_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc44_ab4729_chip_0221_S29_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc44_ab4729_chip_1202_S5_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc827_ab4729_chip_0221_S27_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./sklu1_ab4729_chip_0221_S17_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_a549__1_k27ac_hg_S31-p5-swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1299__1_k27ac_hg_S29-p5-swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1395_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1437_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2009_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2087_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2122_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2126_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h23__1_k27ac_hg_S30-p5-swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h1975_ab4729_chip_0331_12c_S1_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_hcc461_ab4729_chip_0331_12c_S2_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_sw1573_ab4729_chip_0331_12c_S4_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_sw1573_ab4729_chip_0414_13c_S11_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp 1238 chr8 48421505 48441450 + 0 NA intron (NR_104581, intron 6 of 16) AluY|SINE|Alu 219249 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 0.327 3.133 0.689 0.988 2.099 4.277 1.174 0.900 2.077 0.587 0.856 0.747 0.701 4.049 0.560 0.896 0.755 1.626 0.050 0.014 2.992 2.276 0.811 2.593 1.412 2.000 1.069 0.829 0.749 3.017 0.673 3.466 2.230 0.807 1.282 1.262 1.238 1.661 1.717 0.482 0.081 0.031 1144 chr6 45614221 45628128 + 0 NA Intergenic L2a|LINE|L2 230860 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.125 2.240 0.040 0.913 0.809 0.491 0.229 1.818 0.534 0.097 0.189 2.157 1.275 0.431 0.639 4.615 0.185 2.404 0.044 0.010 1.091 0.531 0.016 0.085 1.624 1.815 1.165 0.448 7.812 0.070 0.824 0.647 0.273 0.846 0.220 0.290 0.116 0.313 1.690 3.336 5.400 6.014 908 chr22 20857942 20891123 + 0 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 12197 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 2.612 4.002 7.123 1.471 3.314 1.465 3.445 1.628 nan 2.267 2.558 1.473 0.959 1.218 0.920 0.832 1.239 0.586 0.202 0.070 0.928 0.856 0.933 0.509 4.073 1.310 0.637 1.172 2.653 0.896 1.470 0.286 1.038 3.642 1.766 0.465 1.381 0.787 1.794 1.761 0.951 0.924 93 chr1 154965477 154999792 + 0 NA intron (NR_049765, intron 2 of 3) intron (NR_049765, intron 2 of 3) 7528 NM_001252406 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 2.194 2.462 1.597 1.223 2.943 5.951 2.564 1.203 6.240 3.508 2.963 1.497 1.382 1.941 1.443 2.118 1.028 1.714 1.785 2.895 2.038 2.005 1.189 5.151 2.440 1.157 0.568 1.436 0.700 4.562 2.149 4.764 6.298 2.461 1.897 2.432 2.895 6.506 2.258 0.606 0.751 0.354 1222 chr7 148579819 148583069 + 0 NA promoter-TSS (NM_004456) promoter-TSS (NM_004456) -3 NM_152998 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 7.347 7.575 1.923 2.330 8.571 3.728 11.106 1.653 10.922 4.870 9.930 2.155 1.644 2.100 5.883 4.894 1.965 3.208 2.402 4.146 4.406 6.163 5.282 5.979 10.518 5.257 2.501 3.859 7.525 7.488 8.168 4.823 5.350 13.088 8.394 2.181 4.598 14.319 6.003 3.330 4.526 3.340 1050 chr5 50673663 50686911 + 0 NA intron (NM_002202, intron 1 of 5) intron (NM_002202, intron 1 of 5) -1121 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 2.846 0.126 1.007 0.300 0.599 0.656 0.051 0.128 1.281 0.596 0.432 0.199 0.909 2.738 0.108 0.225 0.160 0.035 0.700 0.021 3.189 3.017 0.094 0.050 0.333 0.055 0.071 0.035 1.018 0.080 0.472 0.910 0.030 0.395 0.042 0.025 0.044 0.619 0.046 0.677 0.087 0.042 1001 chr4 56410829 56418291 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -1484 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 3.360 4.012 3.276 1.363 3.880 2.518 4.149 3.040 3.900 3.074 3.268 2.675 1.861 2.940 1.421 2.443 1.022 2.838 0.913 3.141 1.436 1.821 2.355 2.665 5.900 3.817 1.653 1.932 5.329 2.575 2.229 1.967 1.450 5.371 3.619 1.249 1.789 7.075 2.253 3.103 2.659 2.012 1041 chr5 38547806 38558068 + 0 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 3811 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 0.465 1.126 0.140 1.381 4.093 0.532 1.462 0.420 3.146 2.192 3.362 1.188 1.120 0.603 0.369 1.652 0.195 3.414 0.796 0.351 0.989 0.907 0.563 1.481 0.574 0.751 0.524 0.824 0.359 1.444 1.501 1.975 0.970 3.409 5.100 0.513 0.385 3.003 1.921 0.695 0.610 0.397 415 chr14 61081695 61093115 + 0 NA Intergenic AluSz|SINE|Alu -18529 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 0.310 0.144 0.071 0.029 0.244 0.129 0.322 0.258 7.244 1.660 4.898 0.373 0.113 0.565 0.254 0.102 0.034 0.256 1.017 0.058 0.712 0.391 0.020 0.061 0.130 0.122 0.061 0.281 0.380 0.239 0.106 0.181 0.201 0.111 0.056 0.101 0.284 0.198 0.186 0.379 0.020 0.017 1229 chr8 27490689 27495238 + 0 NA intron (NM_182826, intron 1 of 5) MER45A|DNA|hAT-Tip100 1386 NM_182826 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding 1.129 0.362 6.405 0.046 0.153 0.045 0.991 0.196 0.187 0.024 0.286 0.072 0.192 0.478 0.958 1.831 0.066 0.151 1.402 1.196 1.443 0.886 0.224 0.344 0.284 0.072 0.373 5.991 0.391 0.259 1.011 0.197 0.265 0.244 2.632 1.524 0.068 0.334 0.759 0.348 1204 chr7 98863601 98873623 + 0 NA Intergenic Intergenic -2312 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 4.958 0.449 0.812 0.782 0.013 0.939 2.787 2.071 0.562 0.737 1.971 1.761 2.455 3.068 3.563 0.600 1.509 0.030 0.069 0.495 0.266 0.169 0.162 3.465 1.095 0.736 0.999 11.151 0.876 4.185 0.426 1.339 0.540 1.943 1.124 1.790 0.209 2.744 2.023 2.159 2.752 766 chr2 28490070 28502757 + 0 NA intron (NR_137440, intron 10 of 13) AluSz|SINE|Alu 36913 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 0.823 3.521 1.236 3.824 3.965 1.099 2.042 1.795 2.551 0.836 0.500 2.282 2.907 2.388 2.840 5.117 0.822 4.219 0.094 0.065 2.395 2.158 0.612 5.803 6.433 2.318 1.157 1.463 5.367 2.268 2.123 2.309 1.653 2.945 4.874 1.781 0.730 1.801 2.269 2.590 3.128 3.314 687 chr19 4050068 4068908 + 0 NA intron (NM_015898, intron 1 of 2) intron (NM_015898, intron 1 of 2) 6039 NM_001317990 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 5.203 3.486 0.632 0.796 2.701 1.766 1.885 0.715 4.295 3.014 1.728 0.900 0.731 1.165 2.557 2.165 1.153 1.373 0.898 1.549 1.878 2.261 1.691 3.326 5.345 2.186 0.917 0.505 2.099 3.798 4.495 1.499 1.317 2.903 1.072 1.989 1.474 5.907 1.870 1.574 1.064 0.655 454 chr15 67219547 67229170 + 0 NA intron (NR_135687, intron 2 of 2) intron (NR_135687, intron 2 of 2) 24495 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.784 0.670 0.444 1.043 1.493 5.540 0.823 1.621 4.389 1.424 1.339 2.013 0.600 0.807 1.761 2.262 1.376 1.109 0.415 0.043 0.923 0.535 0.718 1.952 0.260 0.193 0.106 0.814 0.376 3.985 0.226 3.762 3.632 1.023 1.611 2.532 4.262 0.573 0.305 0.579 0.036 0.031 892 chr21 36417805 36426316 + 0 NA promoter-TSS (NM_001754) promoter-TSS (NM_001754) -465 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 4.042 0.684 0.366 1.985 4.234 0.067 3.953 3.302 5.324 2.132 4.075 3.335 2.597 3.691 5.267 4.811 1.409 2.600 0.059 0.017 3.016 3.224 0.356 0.842 4.772 0.368 0.175 2.823 2.101 0.569 3.470 0.676 2.185 3.701 6.371 1.383 0.790 1.042 2.507 2.064 1.522 0.998 943 chr3 52249125 52253796 + 0 NA Intergenic Intergenic 8719 NM_017442 54106 Hs.87968 NM_017442 ENSG00000239732 TLR9 CD289 toll like receptor 9 protein-coding 2.039 0.634 0.259 1.055 1.166 0.156 1.498 1.674 3.498 0.960 1.385 0.758 1.342 0.723 4.063 2.248 2.537 1.504 0.489 0.037 0.934 0.737 0.097 0.084 1.470 8.938 3.482 0.197 0.172 0.331 1.727 0.186 0.485 1.046 1.857 0.968 1.804 0.288 1.583 1.274 1.353 1.410 1018 chr4 146855567 146862463 + 0 NA intron (NM_001306215, intron 1 of 14) CpG 1097 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 5.253 4.997 0.529 0.911 2.576 2.251 5.088 1.712 4.148 2.530 2.383 2.719 2.021 1.325 2.413 3.837 2.627 6.079 1.147 4.878 1.841 2.715 1.517 2.860 4.983 2.718 1.311 2.207 4.647 2.857 3.198 2.669 1.576 2.397 0.226 1.263 2.183 3.015 2.197 2.229 2.054 1.492 488 chr16 4333085 4378910 + 0 NA Intergenic AluSx|SINE|Alu -8765 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 2.493 2.261 0.165 0.633 1.332 1.679 1.640 0.779 3.443 1.622 0.839 0.567 0.293 0.813 0.543 2.238 0.734 0.936 0.353 0.332 1.759 1.631 1.311 1.155 1.448 1.158 0.565 0.721 1.422 2.996 1.995 1.134 2.639 2.222 2.087 0.270 0.508 1.894 0.737 0.799 0.599 0.387 456 chr15 67354259 67474097 + 0 NA intron (NM_005902, intron 1 of 8) MIRb|SINE|MIR -3876 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 1.638 2.587 0.672 1.218 2.493 3.351 1.453 1.541 6.978 4.134 1.115 1.875 1.306 2.186 0.971 2.943 0.829 2.949 0.227 0.115 2.089 1.872 0.667 2.101 3.145 1.387 0.623 1.098 1.136 3.870 4.343 0.659 1.646 2.209 3.183 1.035 1.283 4.373 1.165 1.939 1.088 0.695 45 chr1 59036331 59055507 + 0 NA Intergenic Intergenic -2753 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 2.782 0.694 1.165 1.655 3.314 0.033 3.804 2.436 nan 2.371 4.185 1.585 0.887 3.004 3.427 4.155 1.448 1.677 0.034 0.028 1.997 2.023 0.073 0.440 5.723 0.557 0.281 3.490 2.715 0.098 0.200 0.044 1.641 4.850 4.100 1.068 2.563 0.103 1.129 1.267 0.502 0.701 493 chr16 11675048 11682348 + 0 NA intron (NR_024320, intron 1 of 3) intron (NR_024320, intron 1 of 3) 1531 NM_004862 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 4.234 2.773 10.772 0.468 2.247 3.113 1.961 0.536 6.776 4.205 2.543 0.541 0.305 1.198 2.496 1.238 3.040 0.719 0.070 0.589 1.460 1.373 2.488 3.120 1.842 1.113 0.695 0.612 0.248 6.115 1.576 8.897 4.705 2.614 0.227 1.087 3.248 1.773 1.000 1.709 0.418 0.218 1215 chr7 101762810 101780776 + 0 NA intron (NM_181500, intron 8 of 22) intron (NM_181500, intron 8 of 22) -156560 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 0.136 0.835 1.070 0.530 0.821 3.418 1.097 0.410 0.671 0.393 0.980 0.358 0.492 0.797 0.393 1.398 0.081 0.622 0.200 0.062 0.570 0.335 1.246 5.701 1.602 0.422 0.228 0.432 1.305 4.367 0.405 1.353 1.856 1.067 0.971 0.575 0.890 1.387 0.984 0.167 0.340 0.280 1164 chr6 133003835 133011669 + 0 NA intron (NM_004666, intron 5 of 6) HAL1|LINE|L1 27442 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 0.325 0.050 0.008 0.437 0.629 0.025 0.216 0.511 0.326 0.081 0.036 0.038 0.089 5.768 0.241 0.301 0.012 0.094 0.035 0.382 0.162 0.049 0.873 0.346 0.386 0.217 0.152 0.187 0.172 0.333 0.091 0.036 0.732 0.063 0.110 0.010 0.007 0.013 257 chr11 77732761 77763869 + 0 NA intron (NM_001203261, intron 2 of 2) intron (NM_001203261, intron 2 of 2) 8922 NM_001282406 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 0.649 0.915 0.046 0.481 1.046 0.083 0.626 0.858 nan 1.186 2.650 0.796 0.497 2.425 1.597 2.424 0.951 1.001 0.158 0.022 1.677 1.262 0.184 0.267 2.508 3.011 1.260 1.608 1.283 0.549 0.636 1.538 1.288 0.851 1.926 0.271 0.258 0.794 1.233 1.010 0.054 0.021 1150 chr6 85343340 85367474 + 0 NA Intergenic L4|LINE|RTE -43769 NR_125876 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 0.511 0.236 0.033 0.330 0.454 0.089 0.485 0.310 0.710 0.211 0.459 0.327 0.411 0.441 0.333 0.118 0.004 2.541 0.037 0.011 0.597 0.341 0.079 0.042 0.737 0.410 0.273 0.028 0.268 0.168 0.288 0.089 0.075 0.157 0.023 0.385 0.038 0.116 0.039 0.408 0.060 0.022 36 chr1 45155147 45189197 + 0 NA intron (NM_001145636, intron 6 of 11) intron (NM_001145636, intron 6 of 11) 31778 NM_001145636 339541 Hs.173679 NM_001004307 ENSG00000198520 C1orf228 NCRNA00082|p40 chromosome 1 open reading frame 228 protein-coding 0.224 0.378 0.268 0.524 0.648 0.081 0.521 0.259 3.458 0.701 0.468 0.407 0.174 0.331 0.475 0.725 0.042 0.243 0.326 0.086 0.313 0.235 0.132 0.281 0.473 0.202 0.085 0.437 0.525 0.400 0.389 0.197 0.715 0.549 0.521 0.281 0.880 0.348 0.260 0.112 0.237 0.202 375 chr13 41624840 41637289 + 0 NA Intergenic L2a|LINE|L2 -4633 NM_007187 11193 Hs.411300 NM_007187 ENSG00000120688 WBP4 FBP21 WW domain binding protein 4 protein-coding 2.726 2.967 2.043 0.673 2.297 1.445 1.048 1.109 7.409 5.253 1.984 1.115 0.931 1.532 1.680 2.333 0.684 1.018 0.854 1.223 1.550 1.515 0.949 3.100 2.819 2.403 1.117 1.170 2.462 2.153 1.907 0.985 2.489 2.442 2.180 1.382 2.673 2.341 1.104 1.662 1.685 1.278 404 chr14 37113452 37135096 + 0 NA Intergenic Intergenic -2499 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 0.547 0.065 1.328 0.403 1.186 0.047 1.638 0.508 9.584 4.549 0.988 1.032 0.468 0.851 0.093 1.028 0.261 0.656 1.207 0.264 1.109 0.811 0.270 0.390 0.179 0.067 0.040 0.613 0.267 0.508 0.213 0.821 0.659 1.074 1.590 0.428 0.365 1.412 0.363 0.087 0.032 0.024 480 chr16 1724272 1743986 + 0 NA intron (NM_144570, intron 1 of 4) MER2|DNA|TcMar-Tigger 5851 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 HN1L C16orf34|L11 hematological and neurological expressed 1 like protein-coding 3.171 2.869 0.922 0.974 2.617 3.600 1.699 0.856 2.251 1.298 1.309 1.195 0.804 1.397 1.768 3.502 0.879 0.860 0.259 0.112 1.382 1.212 0.744 0.657 2.300 2.123 0.882 2.010 0.371 1.175 1.202 2.211 2.010 5.046 1.598 0.564 1.498 0.796 1.758 1.569 1.597 1.111 421 chr14 64965907 64978684 + 0 NA promoter-TSS (NM_001304507) promoter-TSS (NM_001304507) -364 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 3.772 2.673 7.385 0.668 2.162 6.792 5.152 1.354 6.351 3.772 4.098 1.522 1.208 2.699 3.816 2.081 1.812 1.902 1.295 1.628 3.645 4.338 1.312 3.861 3.238 3.273 1.544 2.114 3.172 4.756 4.338 3.130 3.904 2.051 4.425 2.094 2.604 6.106 5.265 4.277 1.361 0.978 1178 chr7 5565133 5579385 + 0 NA Intergenic Intergenic -2027 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 6.742 4.287 2.086 0.578 2.265 3.921 3.512 1.208 nan 3.644 4.554 0.820 1.228 1.633 4.760 1.360 1.332 1.838 0.969 1.894 2.546 3.812 1.665 2.366 5.484 3.529 1.479 1.987 3.156 4.381 2.516 1.422 2.484 3.489 3.881 1.685 2.567 7.312 2.420 2.381 1.778 1.177 787 chr2 96808491 96815144 + 0 NA promoter-TSS (NM_004418) promoter-TSS (NM_004418) -638 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 1.228 0.700 0.018 0.171 0.406 0.095 0.918 0.144 2.406 0.602 0.254 0.197 0.231 0.408 1.247 0.739 0.042 3.792 0.074 0.499 0.208 0.055 1.081 2.561 0.290 0.858 0.323 0.206 0.165 0.477 1.155 0.607 1.403 0.686 0.997 0.718 0.247 11.999 0.797 0.344 0.035 0.015 541 chr16 86853325 86870621 + 0 NA Intergenic Intergenic 106276 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LOC102724344 - uncharacterized LOC102724344 ncRNA 0.113 0.195 0.022 0.085 1.252 0.096 0.006 0.698 0.437 0.098 0.034 0.614 0.239 0.247 1.303 0.016 4.463 0.046 0.016 0.265 0.068 0.013 0.831 1.869 0.289 0.178 0.160 1.017 0.108 0.123 2.685 0.213 0.084 3.832 0.398 0.208 0.062 0.352 1.856 0.013 0.017 1006 chr4 77505162 77513146 + 0 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 12450 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 5.337 1.443 6.146 0.405 1.800 0.269 3.571 2.335 3.267 1.914 3.397 2.170 1.080 2.494 0.411 3.039 1.861 0.217 0.111 1.703 1.041 2.316 0.074 0.446 1.210 0.648 1.839 3.639 0.528 0.307 0.138 0.591 2.851 0.671 0.445 2.326 0.269 1.663 0.629 0.837 0.491 135 chr1 204041904 204078369 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 17890 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 0.748 0.669 0.070 0.231 0.594 0.081 0.328 0.447 6.222 3.004 0.620 0.518 0.167 0.382 2.010 1.106 0.349 1.357 1.172 0.121 1.205 0.805 0.590 0.779 1.017 0.740 0.439 0.555 0.490 2.027 0.406 0.236 0.671 0.789 0.084 0.940 0.362 0.891 0.719 0.389 0.052 0.029 711 chr19 36133199 36141099 + 0 NA Intergenic AluSx|SINE|Alu -1976 NM_001863 1340 Hs.431668 NM_001863 ENSG00000126267 COX6B1 COX6B|COXG|COXVIb1 cytochrome c oxidase subunit 6B1 protein-coding 2.241 2.257 0.775 0.814 2.686 1.541 1.446 0.456 3.098 1.943 1.420 0.681 0.894 1.033 1.615 1.212 1.308 1.891 0.887 0.909 0.987 0.807 1.927 2.209 3.116 2.342 1.254 0.507 1.212 5.691 8.462 2.668 1.111 2.149 1.586 1.238 1.322 3.271 0.748 1.075 0.364 0.186 529 chr16 69372319 69375220 + 0 NA promoter-TSS (NM_032382) promoter-TSS (NM_032382) -243 NM_032382 84342 Hs.130849 NM_032382 ENSG00000213380 COG8 CDG2H|DOR1 component of oligomeric golgi complex 8 protein-coding 4.650 6.132 0.471 2.012 4.918 5.119 4.179 1.451 3.589 3.026 3.453 3.626 1.788 3.117 4.430 2.825 2.186 3.989 3.076 2.485 3.303 3.638 2.950 3.012 5.098 9.022 5.224 2.023 2.262 4.734 4.547 3.407 4.404 5.989 6.117 2.396 2.510 5.372 3.457 1.553 1.751 0.989 23 chr1 25235013 25299831 + 0 NA intron (NM_001031680, intron 1 of 5) L1ME3D|LINE|L1 -10652 NM_004350 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC runt related transcription factor 3 protein-coding 0.428 0.145 0.027 0.041 0.090 0.057 0.064 0.096 3.801 0.661 0.266 0.140 0.135 0.059 0.085 0.336 0.037 0.270 0.063 0.109 0.197 0.084 0.219 0.385 1.066 0.147 0.087 0.143 0.126 0.261 0.420 0.041 0.274 0.132 0.040 0.107 0.139 0.608 0.167 0.348 0.019 0.015 1253 chr8 76314880 76322169 + 0 NA Intergenic Intergenic -1381 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 2.540 0.437 1.236 0.755 1.046 1.404 3.922 2.800 3.012 1.116 0.156 0.924 0.979 2.032 0.132 2.214 0.040 1.718 1.817 11.361 2.783 3.235 1.353 0.798 0.494 1.790 0.889 8.556 3.210 3.172 2.541 1.656 0.484 1.277 0.013 0.955 0.374 0.643 0.173 0.156 0.063 0.021 1166 chr6 138043671 138074835 + 0 NA intron (NR_121618, intron 1 of 2) intron (NR_121618, intron 1 of 2) 921 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LOC100507406 - uncharacterized LOC100507406 ncRNA 0.054 0.541 0.018 0.314 0.218 0.160 0.213 0.208 0.469 0.123 0.155 0.051 0.022 0.362 0.699 0.308 0.114 0.218 0.068 0.013 0.541 0.215 0.039 8.005 1.110 0.101 0.092 0.083 0.138 0.295 0.083 0.015 0.301 0.045 0.018 0.102 0.191 0.870 0.253 0.081 0.018 0.015 1094 chr6 326935 347081 + 0 NA intron (NR_104474, intron 3 of 5) intron (NR_104474, intron 3 of 5) 44951 NR_104474 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 0.071 0.158 0.031 0.038 0.245 0.028 0.077 0.021 0.300 0.172 0.199 0.044 0.065 0.048 0.133 0.145 0.014 0.202 0.055 0.036 0.299 0.126 0.074 10.778 0.237 0.075 0.047 0.076 0.287 0.075 0.187 0.035 0.152 0.113 0.097 0.109 0.082 0.116 0.133 0.087 0.009 0.013 815 chr2 216916371 216947854 + 0 NA intron (NM_018441, intron 1 of 7) L1MEc|LINE|L1 14427 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 0.790 0.354 0.029 0.078 0.303 5.845 0.309 0.291 0.474 0.243 0.480 0.103 0.120 0.616 0.333 0.284 0.097 0.159 0.085 0.101 0.403 0.208 0.140 0.180 0.135 0.114 0.092 0.511 0.143 1.251 0.353 0.732 0.148 0.107 0.217 0.100 0.058 0.239 0.057 0.125 0.203 0.089 119 chr1 164598841 164632144 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 86895 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 0.564 1.324 1.027 0.245 0.394 0.047 0.110 0.022 0.992 0.481 0.649 0.062 0.155 0.105 2.355 0.198 0.364 0.536 0.766 0.029 0.204 0.065 0.018 3.356 0.130 0.056 0.056 0.154 0.126 1.377 0.024 0.563 1.287 0.419 0.036 2.600 1.078 0.103 0.736 0.029 0.022 0.028 440 chr14 105945697 105958537 + 0 NA Intergenic Intergenic -1140 NM_001311 1396 Hs.70327 NM_001311 ENSG00000213145 CRIP1 CRHP|CRIP|CRP-1|CRP1 cysteine rich protein 1 protein-coding 2.427 2.520 2.009 0.562 1.286 8.804 1.976 0.657 12.629 6.257 5.525 3.598 1.423 1.011 1.615 1.606 1.265 1.078 1.413 1.310 1.871 2.059 1.736 4.024 2.828 1.451 0.853 1.514 1.678 7.395 7.023 0.862 5.889 3.226 2.089 2.300 8.565 6.430 1.036 3.103 1.286 0.624 821 chr2 232161518 232175156 + 0 NA intron (NM_001271466, intron 18 of 24) L1M4|LINE|L1 -59082 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 0.089 0.144 0.242 0.320 0.689 0.056 0.903 0.333 6.942 2.153 3.228 1.951 0.068 1.842 0.336 1.226 0.043 0.095 0.028 0.031 0.658 0.403 0.043 0.109 0.101 0.027 0.053 0.903 0.111 0.343 0.109 0.279 1.233 1.115 1.441 0.147 1.553 0.112 0.613 0.090 0.025 0.015 697 chr19 13249759 13293790 + 0 NA Intergenic AluSx1|SINE|Alu 10492 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 2.650 2.126 1.356 1.709 3.224 4.187 4.173 1.583 nan 4.197 3.985 1.630 1.399 2.077 4.548 3.215 2.275 2.254 0.538 1.983 3.649 4.067 1.446 2.838 4.287 2.985 1.205 2.074 5.142 3.687 6.396 1.522 2.710 4.231 3.079 1.579 3.320 4.813 6.047 2.577 0.806 0.667 1079 chr5 139014449 139055740 + 0 NA intron (NM_001317205, intron 1 of 2) intron (NM_001317205, intron 1 of 2) -4046 NM_001317207 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 2.929 3.374 0.063 0.771 1.791 0.061 0.299 0.340 7.654 3.420 2.104 1.143 0.914 0.989 2.229 1.767 2.504 1.586 1.543 0.333 2.239 2.133 0.411 1.569 3.491 1.360 0.631 0.376 2.972 1.756 0.229 0.318 2.432 2.151 0.158 1.177 3.107 0.563 0.794 0.793 1.214 1.052 1295 chr9 33318040 33331414 + 0 NA intron (NM_002504, intron 9 of 23) AluY|SINE|Alu 34312 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 0.550 3.008 0.135 0.732 1.196 0.358 1.208 0.299 0.326 0.168 1.120 0.077 0.325 1.930 1.746 1.505 1.499 2.169 0.090 0.010 4.296 4.378 0.232 2.110 0.303 0.280 0.114 0.190 2.821 1.591 0.170 0.464 2.854 0.763 0.425 0.787 2.030 0.126 1.461 0.839 0.082 0.053 813 chr2 208368691 208380831 + 0 NA Intergenic Intergenic -19855 NR_135473 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 0.344 2.273 0.015 1.606 3.186 1.025 0.783 1.793 0.320 0.180 0.325 0.659 1.096 2.901 0.546 3.348 0.331 1.432 0.017 0.011 0.971 0.453 0.067 4.102 2.477 1.118 0.766 0.512 1.110 0.060 1.091 0.090 0.204 0.563 1.025 0.431 0.069 0.340 1.949 3.325 0.209 0.117 879 chr20 62309269 62324504 + 0 NA exon (NM_001283009, exon 15 of 35) exon (NM_001283009, exon 15 of 35) -11118 NM_003823 8771 Hs.434878 NM_003823 ENSG00000243509 TNFRSF6B DCR3|DJ583P15.1.1|M68|M68E|TR6 TNF receptor superfamily member 6b protein-coding 1.516 4.058 0.158 1.719 3.626 4.787 4.787 2.552 11.819 3.476 2.903 2.564 3.549 3.161 1.581 4.014 1.071 1.170 0.104 0.064 3.135 3.573 1.188 1.916 12.533 4.579 1.903 2.546 7.723 2.176 3.798 1.082 1.861 3.652 6.620 1.944 1.396 3.732 2.407 3.324 4.495 3.984 877 chr20 62256293 62261255 + 0 NA promoter-TSS (NM_012384) promoter-TSS (NM_012384) 186 NR_132417 100505771 Hs.448392 NR_132417 ENSG00000232442 LOC100505771 - uncharacterized LOC100505771 ncRNA 8.344 6.814 1.713 0.802 4.228 9.529 6.584 1.592 11.946 6.475 7.187 1.703 2.756 2.317 4.739 3.113 2.916 1.817 3.042 3.956 2.453 4.141 4.045 4.722 10.615 9.058 3.963 2.658 7.199 5.619 6.261 5.487 3.880 4.851 11.659 2.959 4.323 16.878 3.476 4.079 3.598 2.660 543 chr16 88715973 88719293 + 0 NA promoter-TSS (NM_000101) promoter-TSS (NM_000101) -141 NM_000101 1535 Hs.513803 NM_000101 ENSG00000051523 CYBA p22-PHOX cytochrome b-245 alpha chain protein-coding 5.885 1.108 0.002 3.508 9.587 0.220 0.571 0.065 1.677 0.658 0.554 1.143 0.036 3.252 1.217 2.950 0.662 2.601 5.845 0.126 2.907 3.157 0.369 3.036 12.637 14.620 5.982 2.391 0.180 6.262 4.084 0.168 0.100 9.477 0.316 2.893 0.049 4.045 2.655 0.687 0.031 947 chr3 57580500 57585406 + 0 NA promoter-TSS (NR_132369) promoter-TSS (NR_132369) 262 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 4.064 4.885 1.720 1.351 3.410 3.380 7.496 3.664 4.881 4.410 3.308 1.785 1.344 2.830 5.289 2.808 1.451 3.738 1.361 1.288 2.054 2.264 2.069 3.510 4.450 5.740 2.795 1.893 5.807 2.207 3.955 2.657 1.871 6.668 3.850 1.551 1.283 3.423 4.599 2.713 3.675 3.264 750 chr19 56151219 56156426 + 0 NA 5' UTR (NM_016202, exon 1 of 1) 5' UTR (NM_016202, exon 1 of 1) 359 NM_001163423 51157 Hs.631551 NM_016202 ENSG00000213015 ZNF580 - zinc finger protein 580 protein-coding 5.468 7.807 1.959 1.358 3.935 6.349 6.718 1.541 9.526 7.056 6.260 1.851 3.217 5.432 6.755 2.665 2.457 4.679 3.939 1.906 1.697 1.888 5.892 4.028 6.886 4.646 2.229 2.150 2.062 6.648 6.066 4.660 2.544 2.357 4.224 3.339 3.046 9.007 5.421 3.176 2.203 1.015 511 chr16 31137368 31160255 + 0 NA Intergenic AluSz|SINE|Alu -1728 NM_002773 5652 Hs.75799 NM_002773 ENSG00000052344 PRSS8 CAP1|PROSTASIN protease, serine 8 protein-coding 3.752 0.995 1.247 0.695 1.507 0.224 1.644 0.643 5.825 2.402 4.756 0.543 0.144 1.949 2.333 0.868 0.886 0.343 0.268 0.115 0.515 0.405 0.358 0.478 0.692 0.625 0.300 1.450 0.298 0.726 0.570 0.457 3.202 2.656 0.323 0.642 2.429 0.722 0.322 0.183 0.171 0.098 360 chr12 123203725 123216647 + 0 NA Intergenic AluJb|SINE|Alu 4943 NM_032554 27198 Hs.610873 NM_032554 ENSG00000196917 HCAR1 FKSG80|GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR hydroxycarboxylic acid receptor 1 protein-coding 1.397 0.223 0.989 0.743 1.738 0.059 3.251 2.472 2.925 1.589 1.454 1.625 0.147 1.032 2.788 4.479 1.283 1.241 0.039 0.033 1.676 0.943 0.098 0.132 0.370 0.189 0.138 5.184 0.551 0.369 0.154 0.492 0.728 1.598 0.245 0.511 0.345 0.302 1.248 0.295 0.045 0.019 166 chr10 49808628 49823664 + 0 NA intron (NR_045675, intron 2 of 10) MER5B|DNA|hAT-Charlie -2970 NR_144643 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 0.430 0.371 0.018 0.215 0.223 0.084 0.798 0.883 0.137 0.065 0.104 0.870 0.972 0.230 1.565 0.006 0.521 0.033 0.009 0.672 0.419 0.025 0.202 1.336 1.635 0.696 0.147 5.857 0.114 0.526 0.094 0.085 0.085 1.972 0.186 0.022 0.268 0.511 0.573 0.230 0.337 287 chr12 7032941 7040495 + 0 NA promoter-TSS (NM_001940) promoter-TSS (NM_001940) -762 NM_001940 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 3.091 4.336 0.493 1.319 3.466 6.521 4.256 1.673 10.834 4.471 3.926 1.025 1.581 2.329 4.553 3.154 2.189 3.839 1.430 2.493 4.034 5.052 2.129 5.914 5.064 4.613 1.901 2.691 7.890 6.684 9.225 1.850 3.579 2.092 3.428 1.524 1.686 10.900 2.947 1.900 3.336 2.269 482 chr16 2261267 2267008 + 0 NA intron (NM_001042371, intron 1 of 1) CpG 685 NM_001042371 283871 Hs.442634 NM_001042371 ENSG00000184207 PGP AUM|G3PP|PGPase phosphoglycolate phosphatase protein-coding 3.435 4.121 1.029 0.965 3.222 3.501 2.822 0.902 5.302 2.895 1.910 1.502 0.772 1.198 3.716 2.851 1.234 1.784 0.700 0.554 2.120 2.408 1.968 4.777 2.440 2.353 1.155 1.257 2.140 3.224 2.491 4.874 3.305 4.369 2.432 1.197 2.341 4.810 3.324 0.905 1.846 0.949 226 chr11 64035690 64045916 + 0 NA intron (NM_032989, intron 2 of 3) AluSx|SINE|Alu -11008 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding 1.873 3.580 1.297 0.674 1.657 3.986 1.447 0.527 6.582 4.221 2.440 1.276 1.182 1.104 3.329 1.798 1.352 1.435 1.991 2.072 2.050 1.977 1.568 2.742 6.059 4.972 2.002 1.155 2.291 3.621 2.832 1.792 1.319 1.873 1.650 1.243 1.570 3.974 2.494 3.210 1.031 0.562 1015 chr4 129519692 129526389 + 0 NA Intergenic Intergenic 173869 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 0.939 0.908 0.028 0.878 1.107 0.086 0.661 1.065 3.570 1.325 1.315 1.682 1.872 0.225 0.172 2.459 0.071 2.951 0.583 1.307 0.758 0.044 6.188 0.154 0.143 0.080 0.470 3.488 1.912 0.500 5.157 1.735 0.642 0.992 0.565 0.054 0.043 1.105 0.365 0.103 0.030 546 chr16 89982777 89993329 + 0 NA promoter-TSS (NM_001197181) promoter-TSS (NM_001197181) -364 NM_001197181 10381 Hs.511743 NM_006086 ENSG00000258947 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin beta 3 class III protein-coding 1.972 4.000 0.047 1.819 4.686 6.502 4.250 0.709 4.808 2.652 3.049 1.941 2.216 2.025 0.512 2.340 1.119 2.643 2.985 1.299 3.534 4.480 1.954 4.932 6.293 6.437 2.529 2.904 3.029 5.562 10.155 1.418 2.802 4.882 5.193 0.828 0.331 5.752 3.453 3.151 3.253 2.344 562 chr17 8020583 8031230 + 0 NA intron (NM_001165967, intron 2 of 3) CpG-10133 1504 NM_032580 84667 Hs.434828 NM_032580 ENSG00000179111 HES7 SCDO4|bHLHb37 hes family bHLH transcription factor 7 protein-coding 0.730 0.937 0.162 0.477 1.283 1.072 0.918 0.377 1.899 2.011 1.373 0.933 0.232 0.594 0.596 0.831 0.287 0.500 1.269 1.496 0.237 0.240 0.444 1.257 3.482 0.768 0.410 0.803 0.484 4.598 4.693 1.332 0.653 2.199 5.862 0.448 0.546 7.595 0.768 0.536 1.592 1.050 769 chr2 33140993 33141975 + 0 NA intron (NR_027099, intron 5 of 5) (G)n|Simple_repeat|Simple_repeat -10710 NR_027097 100271832 Hs.743603 NR_027097 LOC100271832 - uncharacterized LOC100271832 ncRNA 0.070 nan 0.020 0.113 1.045 1.465 0.555 0.807 4.787 0.770 1.031 2.127 0.808 1.968 1.166 1.107 0.781 0.880 0.248 0.291 0.163 0.401 0.188 0.166 0.468 0.636 0.769 0.469 0.364 714 chr19 37301399 37385402 + 0 NA intron (NR_038362, intron 2 of 2) AluSc|SINE|Alu 847 NM_001242475 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 0.268 0.241 0.209 0.187 0.556 0.147 0.313 0.078 0.353 0.304 0.194 0.190 0.022 0.086 0.194 0.200 0.085 0.132 0.093 0.063 0.198 0.194 0.028 0.214 0.297 0.423 0.231 0.137 0.227 0.062 0.819 0.129 0.067 0.527 0.150 0.019 0.031 0.162 0.159 0.073 3.067 2.765 75 chr1 151428068 151442222 + 0 NA Intergenic Intergenic -3204 NM_015100 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element with ZNF domain protein-coding 1.151 1.340 0.621 0.482 1.109 2.054 0.990 0.521 9.793 4.411 0.828 0.434 0.828 0.663 0.756 1.290 0.796 0.918 0.747 1.029 1.147 1.197 1.104 1.882 2.171 1.210 0.606 0.352 1.421 1.692 1.517 2.758 2.185 1.784 1.030 0.588 1.101 2.576 1.213 0.736 0.831 0.500 437 chr14 105259862 105272860 + 0 NA Intergenic Intergenic -1157 NM_001137601 100128927 Hs.170853 NM_001137601 ENSG00000179627 ZBTB42 LCCS6|ZNF925 zinc finger and BTB domain containing 42 protein-coding 1.296 1.274 0.455 0.220 0.637 2.093 0.664 0.576 5.723 2.048 3.476 0.679 0.372 0.541 0.901 0.892 0.433 0.563 0.711 1.032 1.120 0.741 0.679 1.330 1.028 1.297 0.999 0.621 0.398 2.561 6.073 0.936 4.142 1.075 1.076 0.563 2.298 3.581 0.547 1.448 0.369 0.222 680 chr19 770365 802997 + 0 NA Intergenic AluSg|SINE|Alu -10711 NM_002819 5725 Hs.172550 NM_002819 ENSG00000011304 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 0.814 1.345 0.745 0.290 1.006 2.784 1.300 0.379 1.891 0.909 1.216 0.215 0.307 0.999 1.531 0.966 0.568 0.896 0.569 0.650 1.711 1.805 1.730 2.551 2.705 2.053 1.075 0.493 1.402 4.026 1.623 1.107 1.174 1.533 1.440 0.497 0.428 3.068 1.222 1.252 0.884 0.652 840 chr20 13502793 13507806 + 0 NA intron (NR_136628, intron 9 of 12) intron (NR_136628, intron 9 of 12) 114284 NR_136631 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 0.172 0.217 0.113 0.148 0.088 0.021 0.095 0.063 0.146 0.205 0.076 0.145 0.070 0.095 0.110 0.040 0.083 0.029 0.116 0.486 0.147 0.055 0.047 0.061 0.199 0.472 0.104 8.943 0.292 0.056 0.019 0.146 0.180 0.037 0.349 0.092 0.046 503 chr16 21777287 21804715 + 0 NA Intergenic AluSz|SINE|Alu 39494 NR_003370 730092 Hs.31290 NR_003370 RRN3P1 - RRN3 homolog, RNA polymerase I transcription factor pseudogene 1 pseudo 2.535 0.236 0.082 0.284 0.399 0.513 0.530 1.221 0.825 0.265 0.183 0.565 0.387 2.691 2.999 2.075 0.056 0.855 0.121 0.010 1.089 0.713 0.086 3.840 0.477 4.330 2.349 1.141 2.535 0.478 0.100 3.121 1.819 0.489 1.185 0.884 0.244 0.087 0.821 0.820 0.424 0.402 1124 chr6 33376819 33396974 + 0 NA promoter-TSS (NM_001014840) promoter-TSS (NM_001014840) -831 NM_001014840 51596 Hs.520070 NM_015921 ENSG00000112514 CUTA ACHAP|C6orf82 cutA divalent cation tolerance homolog protein-coding 1.719 2.620 0.636 0.471 1.552 2.283 0.892 0.761 2.829 1.500 1.934 0.857 0.733 0.502 1.188 2.186 0.557 1.122 1.073 2.002 1.399 1.315 1.002 1.623 3.316 1.721 0.975 0.479 3.185 1.597 3.972 2.590 1.039 2.177 2.512 0.469 0.649 3.844 1.059 1.598 1.613 0.967 972 chr3 172253173 172265568 + 0 NA Intergenic AluSx|SINE|Alu -18073 NR_033994 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 1.674 0.261 0.249 0.275 0.316 1.862 0.376 0.256 1.734 0.361 4.178 0.567 0.107 0.641 1.950 0.834 1.288 0.973 0.089 0.022 1.252 0.640 2.035 0.101 0.483 0.209 0.120 0.167 0.189 0.223 0.381 0.140 2.096 0.231 0.253 0.326 2.224 0.275 0.582 0.073 0.033 0.029 115 chr1 161049777 161071006 + 0 NA Intergenic Intergenic -1006 NM_030916 81607 Hs.492490 NM_030916 ENSG00000143217 NECTIN4 EDSS1|LNIR|PRR4|PVRL4|nectin-4 nectin cell adhesion molecule 4 protein-coding 1.675 0.640 0.539 2.303 2.834 0.269 1.409 2.612 10.168 4.591 3.154 2.807 0.831 3.407 1.095 2.619 1.345 0.299 0.254 0.033 1.154 0.487 0.177 0.222 1.435 0.243 0.209 0.857 0.348 0.547 0.497 0.521 3.163 4.171 0.128 1.744 2.278 0.404 0.722 0.143 0.068 0.052 981 chr3 187452789 187469982 + 0 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 2128 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 2.988 1.818 1.283 0.916 2.739 2.782 3.300 1.276 5.607 2.961 3.338 1.598 1.487 2.931 5.543 2.222 1.149 2.530 1.464 0.492 4.660 4.377 0.443 2.793 2.059 1.570 1.087 1.416 3.058 1.729 2.510 1.737 2.316 2.572 3.351 0.844 1.474 0.799 2.057 1.435 0.710 0.471 1056 chr5 59470147 59508473 + 0 NA intron (NM_001165899, intron 1 of 16) AluYf4|SINE|Alu -294230 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA 0.078 0.176 0.005 0.034 0.113 0.038 0.130 0.017 0.124 0.095 0.083 0.042 0.065 0.051 0.113 0.260 0.015 0.593 0.021 0.007 0.663 0.202 0.015 9.305 0.133 0.020 0.030 0.036 0.157 0.642 0.033 0.249 0.134 0.046 0.038 0.257 0.039 0.020 0.039 0.022 0.018 0.008 91 chr1 154927703 154936107 + 0 NA exon (NM_138300, exon 3 of 3) exon (NM_138300, exon 3 of 3) -2042 NM_001321726 101928120 Hs.533597 NM_001321726 LOC101928120 - uncharacterized LOC101928120 protein-coding 2.760 3.634 1.442 1.285 3.394 5.321 2.362 1.039 4.910 3.441 3.063 1.690 2.337 2.132 1.939 1.864 1.234 1.945 2.801 1.914 2.314 2.462 1.374 3.219 4.185 2.051 1.078 1.332 1.748 2.787 3.175 5.202 5.084 2.917 2.811 1.658 2.608 6.794 2.204 1.271 1.173 0.980 484 chr16 3029026 3048848 + 0 NA promoter-TSS (NR_033861) promoter-TSS (NR_033861) -118 NR_033861 283875 Hs.620489 NR_033861 LINC00514 LA16c-380H5.1 long intergenic non-protein coding RNA 514 ncRNA 1.265 1.086 0.150 0.230 0.843 0.843 0.892 0.191 8.143 3.261 0.818 0.464 0.232 0.490 0.818 1.055 0.883 0.386 0.218 0.196 0.469 0.397 0.684 0.896 0.941 0.556 0.271 0.480 0.363 1.096 0.876 0.699 2.261 1.281 0.826 0.376 1.245 1.782 0.535 0.369 0.379 0.228 1190 chr7 17636771 17649752 + 0 NA Intergenic L1PA16|LINE|L1 -44728 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 0.631 0.677 0.173 0.527 0.705 0.330 1.802 0.809 11.703 6.935 9.209 0.930 0.984 0.731 0.608 0.625 0.523 0.594 0.073 0.011 3.733 2.503 0.040 0.283 0.633 0.265 0.102 1.635 0.879 0.251 0.044 1.572 2.385 0.982 0.214 1.347 0.871 0.116 2.357 0.492 0.018 0.008 86 chr1 153945838 153952209 + 0 NA intron (NM_006694, intron 3 of 4) intron (NM_006694, intron 3 of 4) 1428 NM_006694 10899 Hs.6396 NM_006694 ENSG00000143543 JTB HJTB|HSPC222|PAR|hJT jumping translocation breakpoint protein-coding 2.004 1.976 0.399 0.716 1.838 1.137 1.296 0.780 20.672 22.693 2.707 1.493 0.997 1.954 1.686 1.214 0.465 2.080 1.869 1.045 1.068 1.130 1.062 3.199 2.143 1.665 1.344 0.475 0.481 2.186 2.418 7.509 5.029 1.749 2.125 2.037 3.107 5.495 1.685 0.606 0.578 0.401 1157 chr6 114175171 114183051 + 0 NA intron (NM_002356, intron 1 of 1) intron (NM_002356, intron 1 of 1) 597 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 4.367 2.372 3.591 1.227 3.602 5.511 2.363 0.937 6.907 5.301 4.464 1.263 0.779 2.385 8.814 1.360 1.709 4.684 2.387 1.767 3.041 3.655 0.373 0.136 10.289 1.974 0.831 3.948 4.379 3.673 8.117 0.330 1.157 4.136 1.772 1.120 2.933 2.260 1.750 0.019 5.116 4.232 313 chr12 48289417 48299882 + 0 NA intron (NM_001017535, intron 1 of 10) intron (NM_001017535, intron 1 of 10) 4165 NM_000376 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D (1,25- dihydroxyvitamin D3) receptor protein-coding 1.165 0.511 0.113 1.418 3.957 2.903 2.770 0.705 3.808 1.838 3.280 0.758 0.328 1.362 1.511 1.692 0.450 0.576 0.316 0.040 1.212 0.750 0.071 0.313 2.598 0.382 0.283 1.020 2.646 0.648 3.603 1.615 1.724 2.222 0.903 0.768 0.547 1.026 0.700 0.427 0.281 0.184 341 chr12 65949012 65964901 + 0 NA intron (NR_120434, intron 4 of 4) intron (NR_120434, intron 4 of 4) -5865 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 0.483 1.585 0.121 0.228 0.179 0.204 0.275 1.261 0.993 0.265 1.784 1.363 1.450 0.372 0.091 1.814 0.018 6.950 0.038 0.221 0.096 0.028 0.009 0.572 0.334 0.208 0.122 0.145 0.729 0.128 0.680 0.040 0.087 0.107 0.565 0.107 0.091 0.267 0.278 1.238 0.098 0.077 701 chr19 15176681 15188631 + 0 NA Intergenic AluSq|SINE|Alu -15221 NM_001004713 126370 Hs.631610 NM_001004713 ENSG00000094661 OR1I1 OR19-20|OR1I1P|OR1I1Q olfactory receptor family 1 subfamily I member 1 protein-coding 0.423 0.077 1.176 0.125 0.048 0.119 0.017 nan 0.065 0.100 0.024 0.010 10.598 0.084 3.386 0.039 0.017 0.035 0.006 0.035 0.023 0.036 4.355 0.171 0.071 0.038 0.068 0.061 0.055 0.506 1.040 0.048 0.008 0.031 1.475 1.854 0.066 0.272 0.005 0.013 304 chr12 26264865 26282030 + 0 NA 3' UTR (NM_030762, exon 5 of 5) 3' UTR (NM_030762, exon 5 of 5) 4556 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 1.674 2.583 0.261 0.695 0.767 0.390 1.639 0.245 0.786 0.485 0.710 0.809 4.116 0.341 5.480 0.770 0.406 4.183 0.473 0.292 0.776 0.695 0.201 1.426 1.176 0.509 0.341 0.197 3.826 0.832 2.753 1.506 0.302 1.589 1.871 0.196 0.863 7.082 0.637 6.566 0.356 0.160 1230 chr8 27720128 27737761 + 0 NA 3' UTR (NM_173833, exon 9 of 9) 3' UTR (NM_173833, exon 9 of 9) 14689 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 0.162 0.054 0.007 0.140 0.150 2.370 0.043 0.287 0.454 0.077 0.031 0.615 0.160 0.055 1.213 0.614 0.033 0.583 0.045 0.016 0.694 0.493 0.033 3.846 0.277 0.109 0.080 0.123 0.126 5.578 0.053 2.268 1.738 0.287 0.129 0.868 0.613 2.202 0.574 0.172 0.020 0.006 646 chr17 75115183 75144365 + 0 NA intron (NM_001204408, intron 3 of 19) AluSx1|SINE|Alu -7231 NM_001143998 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.216 2.117 0.221 1.436 3.299 0.905 1.158 1.488 3.469 1.648 1.385 2.695 1.492 1.828 1.249 4.771 1.054 2.737 0.336 0.214 1.400 1.051 1.068 0.890 2.764 1.524 0.727 1.007 4.204 1.024 2.561 0.572 1.653 4.487 3.755 0.671 0.809 1.264 3.449 2.645 2.701 2.411 128 chr1 184019616 184032263 + 0 NA intron (NM_001127394, intron 3 of 3) L1ME3F|LINE|L1 5154 NM_001300764 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 2.201 1.101 2.628 0.359 1.042 1.189 1.493 0.825 2.168 1.326 1.176 0.427 0.464 0.692 1.050 0.908 0.470 1.265 0.193 0.777 1.321 1.038 0.741 0.720 0.743 1.289 0.658 0.346 1.411 0.766 0.794 0.561 0.542 0.786 1.953 0.904 0.503 0.689 0.480 0.525 2.022 1.823 253 chr11 74405276 74411741 + 0 NA intron (NM_001278473, intron 9 of 10) L2c|LINE|L2 13904 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 0.056 0.814 0.010 0.058 0.133 0.030 0.072 0.016 nan 0.075 0.093 0.112 0.552 0.403 0.457 0.493 0.522 0.030 0.181 0.090 0.375 0.145 0.688 0.084 0.060 0.096 0.246 0.667 0.120 6.277 1.236 0.071 0.047 0.150 0.065 0.288 1.177 0.059 0.009 0.008 430 chr14 100737749 100754986 + 0 NA TTS (NM_003403) TTS (NM_003403) 2673 NR_106822 102466730 NR_106822 ENSG00000100811 MIR6764 hsa-mir-6764 microRNA 6764 ncRNA 0.702 0.495 0.947 0.077 0.404 1.125 0.571 0.282 3.023 1.331 7.064 0.594 0.207 0.203 0.301 0.724 0.255 0.274 0.202 0.274 0.836 0.691 0.350 0.574 0.466 0.374 0.232 0.971 0.393 0.884 1.723 0.226 0.946 0.380 0.643 0.311 0.464 0.538 0.561 0.508 0.217 0.151 547 chr16 90084732 90090357 + 0 NA intron (NM_001286209, intron 1 of 10) intron (NM_001286209, intron 1 of 10) -1005 NM_001288709 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding 3.451 4.315 0.419 1.318 4.964 3.191 5.265 1.162 3.930 1.671 3.483 2.124 0.841 2.195 2.911 2.728 1.246 2.568 4.131 2.319 2.922 2.296 2.170 4.236 5.069 3.577 2.723 1.743 1.174 4.192 7.442 3.332 3.958 6.394 5.835 1.958 2.085 5.058 1.780 1.589 1.034 0.636 652 chr17 78761428 78769284 + 0 NA intron (NM_001163034, intron 7 of 29) intron (NM_001163034, intron 7 of 29) 14076 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 0.850 3.750 2.053 3.344 5.102 2.705 2.191 3.897 1.014 0.550 4.772 4.287 2.813 0.765 8.152 0.194 4.862 0.778 0.036 4.366 3.452 1.070 4.627 7.901 0.998 0.404 1.659 11.528 2.830 3.366 1.322 3.003 2.132 3.404 0.704 1.330 1.363 2.173 5.705 2.287 2.760 903 chr22 18109748 18123907 + 0 NA Intergenic L2b|LINE|L2 -4523 NM_001270727 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 3.413 1.968 4.495 1.673 4.197 2.641 4.939 2.443 nan 4.132 4.031 1.505 0.827 1.934 2.320 1.743 2.069 2.079 0.622 0.782 1.665 1.467 1.592 2.696 1.958 1.823 0.745 1.772 2.598 1.486 3.222 2.537 2.769 5.346 3.760 1.501 1.980 1.258 3.525 2.952 1.924 1.807 1066 chr5 92931423 92944712 + 0 NA Intergenic Intergenic 18427 NR_031754 100313887 NR_031754 ENSG00000113391 MIR2277 mir-2277 microRNA 2277 ncRNA 0.179 0.071 3.956 0.129 0.191 0.275 0.529 0.164 1.068 0.362 0.385 0.313 0.052 0.189 0.195 0.229 0.058 0.206 0.053 2.868 0.290 0.086 0.819 0.178 0.084 0.049 0.035 0.104 0.068 0.490 0.266 0.041 0.201 0.113 0.132 0.266 0.055 0.275 0.154 0.183 0.087 0.054 1027 chr5 261355 275593 + 0 NA Intergenic AluY|SINE|Alu 3165 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 1.064 1.607 0.283 0.801 3.352 1.400 2.594 0.484 3.560 2.304 2.405 0.549 0.598 0.606 2.923 2.127 1.426 1.426 0.528 0.961 1.600 1.592 0.946 2.206 2.104 2.862 1.529 0.823 1.256 1.046 1.391 1.045 4.407 7.275 1.142 0.996 1.255 0.680 1.406 0.364 0.570 0.298 991 chr4 4762922 4768631 + 0 NA intron (NR_125892, intron 1 of 2) intron (NR_125892, intron 1 of 2) 2289 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 0.452 0.163 0.011 1.278 0.316 0.060 0.014 0.088 0.070 0.037 2.008 2.617 0.133 1.433 1.862 3.068 0.036 0.024 0.185 0.115 0.014 0.057 1.641 1.002 0.569 0.027 12.690 0.087 0.025 0.027 0.258 0.224 0.208 0.880 0.262 0.054 1.185 4.036 0.658 0.183 129 chr1 197922451 197929834 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR 39625 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 0.450 0.031 0.026 0.057 0.026 0.120 0.028 0.218 0.077 1.027 0.020 0.177 0.182 0.058 0.039 0.126 0.065 0.037 1.017 0.527 0.030 0.139 0.125 0.008 0.011 0.333 0.190 0.221 0.058 4.298 0.099 0.068 0.025 0.033 0.044 0.048 0.022 0.008 0.007 597 chr17 38802175 38805487 + 0 NA intron (NM_003079, intron 1 of 10) intron (NM_003079, intron 1 of 10) 272 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 27.837 6.656 1.498 2.119 6.366 4.269 5.799 2.462 6.033 4.571 6.730 2.906 3.710 5.572 5.835 3.802 2.006 1.649 1.361 4.162 4.664 7.124 3.449 5.924 6.900 10.254 4.922 3.554 7.505 8.429 3.727 3.572 6.049 7.327 3.585 3.664 5.106 6.605 4.127 2.480 2.660 2.055 741 chr19 48988425 49006254 + 0 NA exon (NM_001080434, exon 13 of 16) exon (NM_001080434, exon 13 of 16) 19107 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 1.494 1.846 0.131 0.996 2.328 0.883 1.201 0.859 nan 0.768 1.509 1.054 0.312 1.162 3.035 1.739 1.731 0.543 0.219 0.039 0.728 0.724 0.157 0.811 2.321 1.385 0.702 0.501 0.471 2.718 1.302 1.186 1.707 2.748 0.724 0.585 2.718 1.513 1.115 0.940 0.352 0.210 120 chr1 164713558 164763527 + 0 NA non-coding (NR_038072, exon 4 of 4) non-coding (NR_038072, exon 4 of 4) 5336 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 0.308 2.026 1.366 0.437 0.591 0.048 0.844 0.114 0.626 0.293 0.519 0.057 0.373 0.253 1.278 0.478 0.273 1.706 1.781 0.017 0.760 0.470 0.031 6.888 0.149 0.137 0.092 0.629 0.540 2.457 0.044 1.100 1.020 0.501 0.105 1.404 0.540 0.281 1.394 0.123 0.029 0.013 1290 chr8 145732372 145736170 + 0 NA promoter-TSS (NM_138431) promoter-TSS (NM_138431) -148 NM_138431 113655 Hs.7678 NM_138431 ENSG00000167700 MFSD3 - major facilitator superfamily domain containing 3 protein-coding 10.444 6.469 2.821 2.809 7.808 6.285 8.614 3.115 14.091 10.635 5.513 5.277 2.143 4.013 10.417 4.952 3.041 2.038 6.210 4.270 2.428 3.459 3.291 4.803 7.955 3.509 2.009 2.412 3.364 6.937 9.659 5.083 5.751 7.367 3.807 3.993 6.595 4.810 2.693 2.388 2.244 1.450 901 chr21 45126090 45162734 + 0 NA intron (NM_003681, intron 1 of 10) intron (NM_003681, intron 1 of 10) 5434 NM_003681 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 2.372 0.995 2.866 0.715 1.896 4.155 1.748 1.049 3.349 1.586 2.384 0.914 0.635 1.494 2.354 4.549 1.071 0.590 0.216 0.108 1.645 1.620 1.093 0.699 1.474 0.743 0.459 0.973 1.597 2.313 0.981 0.801 1.581 3.096 0.584 1.449 1.450 0.640 0.832 0.888 1.664 0.999 658 chr17 79815668 79831397 + 0 NA Intergenic Intergenic -4988 NM_000918 5034 Hs.464336 NM_000918 ENSG00000185624 P4HB CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase subunit beta protein-coding 3.029 6.594 1.566 1.326 4.935 10.785 3.123 1.475 7.879 5.779 3.637 2.433 2.036 2.930 1.498 3.821 1.185 2.435 2.604 2.238 2.013 2.894 2.838 4.218 4.833 3.567 1.289 1.199 3.696 5.078 6.429 2.403 4.377 6.531 3.080 2.313 2.528 8.432 1.655 3.670 2.699 1.424 669 chr18 6715842 6721388 + 0 NA Intergenic Intergenic 11246 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 0.052 0.149 5.118 0.068 0.075 0.067 0.507 0.019 0.849 0.392 1.557 0.022 0.390 0.017 0.017 0.277 0.018 0.093 0.049 0.013 0.893 0.039 0.101 0.032 0.014 0.142 0.044 0.102 0.043 0.047 0.048 0.419 0.066 1.493 0.115 0.158 0.014 0.009 157 chr10 24982681 24991405 + 0 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 25554 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 0.182 0.208 4.972 0.107 0.272 0.063 0.078 0.207 0.222 0.074 0.094 0.034 0.041 0.251 0.265 0.715 0.186 0.368 0.023 0.064 0.221 0.092 0.174 0.096 0.074 0.069 0.081 0.263 0.156 0.373 0.137 0.065 0.275 0.229 0.064 0.126 0.085 0.060 0.267 0.194 0.040 169 chr10 63656290 63665584 + 0 NA promoter-TSS (NM_032199) promoter-TSS (NM_032199) -76 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 3.806 3.599 1.012 0.978 2.797 6.692 2.994 1.168 6.771 5.429 3.772 2.034 1.002 2.091 3.557 3.040 2.701 4.117 1.514 0.865 2.583 2.556 0.056 2.009 2.121 1.045 0.717 1.814 2.966 1.769 1.890 2.606 2.889 1.525 6.437 2.155 1.709 3.227 3.568 2.332 0.726 0.713 377 chr13 73699988 73720308 + 0 NA Intergenic AluSq2|SINE|Alu 77218 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 1.138 0.641 1.513 0.103 0.254 1.706 0.214 0.755 6.209 2.384 1.282 0.606 0.123 0.874 1.761 0.868 0.248 0.593 0.059 0.007 1.165 0.851 0.069 0.063 0.159 0.116 0.119 1.063 0.176 1.046 0.088 0.831 0.869 0.422 0.023 1.288 0.485 0.215 0.125 0.449 0.017 0.003 3 chr1 1092250 1102766 + 0 NA Intergenic Intergenic -4976 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 7.772 0.949 1.938 1.153 3.403 0.090 4.426 1.224 9.650 4.425 2.580 2.215 0.741 2.893 4.774 1.806 0.237 0.436 3.863 0.026 0.421 0.310 0.168 0.675 0.591 0.683 0.407 1.164 0.532 1.003 0.546 1.061 2.586 3.674 0.053 1.771 0.986 0.469 0.677 0.121 1.057 0.677 544 chr16 88845999 88852705 + 0 NA intron (NM_001142864, intron 1 of 50) MER5B|DNA|hAT-Charlie 2276 NM_001142864 9780 Hs.377001 NM_001142864 ENSG00000103335 PIEZO1 DHS|FAM38A|LMPH3|Mib piezo type mechanosensitive ion channel component 1 protein-coding 6.290 6.244 0.499 1.387 5.165 4.063 3.279 1.071 1.991 1.118 2.194 1.653 1.213 1.387 3.574 2.584 1.136 3.102 1.008 1.234 2.961 3.329 2.974 1.881 8.018 10.878 4.845 1.291 2.310 4.509 7.773 1.392 2.418 5.748 3.085 0.753 3.014 4.258 2.245 2.598 1.365 0.590 1308 chr9 109645298 109661121 + 0 NA intron (NM_021224, intron 1 of 12) intron (NM_021224, intron 1 of 12) 27831 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 0.408 0.541 2.186 0.864 1.310 0.880 1.131 0.639 1.946 0.920 0.930 0.940 0.388 0.810 0.487 1.908 0.835 0.531 0.133 0.006 1.017 0.483 0.395 0.425 1.500 1.033 0.576 0.842 0.810 0.198 0.678 0.274 0.344 1.361 0.221 0.139 0.425 0.359 1.019 0.387 0.724 0.820 583 chr17 36097650 36107025 + 0 NA intron (NM_001304286, intron 1 of 6) CpG 2732 NM_001304286 6928 Hs.191144 NM_000458 ENSG00000275410 HNF1B FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HNF1 homeobox B protein-coding 16.864 0.092 0.026 0.060 0.080 6.923 2.802 2.643 0.156 0.138 4.479 0.046 1.787 5.448 0.075 0.271 0.025 0.010 1.303 0.029 3.972 5.323 0.086 0.107 0.171 0.225 0.136 2.184 0.202 7.498 0.054 4.173 4.745 0.136 0.822 0.637 0.206 0.033 0.024 1.532 1.189 6 chr1 6278756 6282848 + 0 NA TTS (NM_012405) TTS (NM_012405) 14613 NM_207396 388591 Hs.716549 NM_173795 ENSG00000158286 RNF207 C1orf188 ring finger protein 207 protein-coding 1.680 0.277 6.794 1.264 3.246 0.471 1.773 1.243 nan 0.389 0.515 0.712 0.088 1.675 2.301 1.965 1.812 0.359 1.187 0.034 0.356 0.187 0.036 0.170 0.198 0.113 0.170 0.620 0.100 0.151 0.395 0.157 1.289 3.632 0.149 0.987 3.294 0.379 0.146 0.075 0.056 0.012 1061 chr5 72699433 72735210 + 0 NA Intergenic Intergenic 27031 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 0.492 0.155 0.483 0.361 0.431 0.046 0.192 0.440 4.062 0.963 0.431 0.137 0.053 0.134 0.189 0.622 0.056 0.350 0.081 0.012 0.781 0.353 0.051 0.073 0.748 0.258 0.159 0.047 0.318 0.165 0.270 0.117 0.048 0.478 0.293 0.113 0.065 0.421 0.114 0.055 0.718 0.581 717 chr19 39419391 39423086 + 0 NA promoter-TSS (NM_021107) promoter-TSS (NM_021107) -110 NM_033362 6183 Hs.411125 NM_021107 ENSG00000128626 MRPS12 MPR-S12|MT-RPS12|RPMS12|RPS12|RPSM12 mitochondrial ribosomal protein S12 protein-coding 4.183 4.177 0.842 1.589 3.726 3.283 2.589 0.821 4.355 3.004 2.552 1.296 2.137 2.448 3.263 2.042 2.231 3.190 1.242 0.973 2.495 2.405 3.547 3.310 5.437 11.666 6.332 1.078 2.306 6.400 7.727 3.724 2.018 4.389 2.595 2.204 3.235 3.849 1.772 1.147 1.934 1.390 772 chr2 46292744 46311391 + 0 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -222474 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.497 2.557 0.013 0.294 0.692 1.796 0.158 0.261 nan 0.229 0.116 0.676 1.314 0.364 1.389 1.081 0.734 1.217 0.060 0.008 1.208 0.726 1.819 0.377 1.186 2.599 1.090 0.353 4.999 0.847 0.382 1.263 0.917 0.251 0.377 0.393 0.759 2.313 0.758 2.863 3.267 2.559 1241 chr8 53294095 53306573 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 22105 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 0.029 0.075 0.015 0.016 0.151 0.035 0.055 0.050 0.289 0.071 0.052 0.128 0.009 0.044 0.054 0.061 0.022 4.513 0.280 0.016 0.023 0.018 0.056 0.059 0.024 0.043 0.036 0.206 0.256 0.064 0.031 0.063 0.080 0.215 0.029 0.048 0.023 0.026 0.027 0.014 0.004 113 chr1 160976877 160994061 + 0 NA intron (NM_016946, intron 1 of 9) (CAA)n|Simple_repeat|Simple_repeat 5664 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 1.983 0.784 4.692 1.323 3.085 0.653 2.589 2.457 4.724 2.906 4.259 1.293 1.147 3.055 1.891 2.678 1.529 0.134 2.918 0.029 2.116 1.643 0.196 0.753 1.808 0.393 0.309 1.484 0.181 1.878 0.499 0.293 1.471 4.977 0.538 1.584 1.001 0.886 2.041 0.341 0.080 0.030 104 chr1 155656079 155660591 + 0 NA promoter-TSS (NM_001199851) promoter-TSS (NM_001199851) 112 NM_001198903 55249 Hs.584927 NM_018253 ENSG00000163374 YY1AP1 HCCA1|HCCA2|YAP|YY1AP YY1 associated protein 1 protein-coding 5.802 5.249 3.669 3.483 7.394 7.635 4.441 3.206 10.210 6.467 6.046 4.477 5.079 5.543 4.052 4.563 2.569 3.864 4.472 4.813 4.596 6.408 4.215 7.486 7.668 7.083 3.166 2.982 4.116 5.820 5.899 2.406 3.739 9.928 6.629 4.082 5.003 13.307 6.205 3.046 3.831 2.166 526 chr16 67269849 67283961 + 0 NA intron (NM_001318202, intron 1 of 23) (TA)n|Simple_repeat|Simple_repeat 4520 NM_001318202 29109 Hs.95231 NM_013241 ENSG00000135723 FHOD1 FHOS formin homology 2 domain containing 1 protein-coding 1.423 2.920 0.502 1.866 4.576 5.658 3.640 1.227 5.885 3.782 4.908 2.216 2.127 2.259 3.252 3.617 2.662 3.765 1.126 1.484 4.192 4.666 1.958 3.895 5.258 3.142 1.732 2.093 2.393 3.150 2.004 1.779 5.164 4.935 4.115 1.180 2.185 2.737 2.638 1.397 0.400 0.267 289 chr12 7068429 7075638 + 0 NA promoter-TSS (NR_135032) promoter-TSS (NR_135032) -375 NR_135032 105369635 Hs.744442 NR_135032 ENSG00000257084 LOC105369635 - uncharacterized LOC105369635 ncRNA 5.624 2.714 2.018 2.554 5.604 2.429 8.998 2.679 14.197 10.577 8.486 2.006 1.534 4.696 8.252 3.738 1.974 2.632 4.478 0.621 2.531 2.589 0.462 6.835 0.427 0.973 0.551 5.552 2.378 4.607 1.090 3.128 4.875 4.989 1.052 3.633 3.552 4.565 2.266 0.085 0.240 0.083 605 chr17 40713093 40721023 + 0 NA exon (NM_001042529, exon 6 of 10) exon (NM_001042529, exon 6 of 10) -2020 NM_198204 6945 Hs.383019 NM_170607 ENSG00000108788 MLX MAD7|MXD7|TCFL4|TF4|bHLHd13 MLX, MAX dimerization protein protein-coding 3.676 3.930 0.585 1.851 4.774 8.859 3.980 1.556 nan 1.953 2.995 1.457 2.236 3.125 3.717 3.711 1.315 1.342 1.200 1.656 2.452 2.561 2.138 3.259 4.848 2.467 0.940 2.024 3.067 3.942 2.543 4.652 2.631 4.012 3.194 2.070 2.013 5.132 3.586 1.908 2.150 1.271 295 chr12 11800596 11823235 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 9127 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 1.671 1.331 0.397 0.485 1.416 1.224 1.975 0.546 5.009 1.906 1.557 0.350 0.603 0.934 1.498 0.899 0.617 1.708 1.067 0.832 1.392 1.491 0.413 0.594 1.433 0.990 0.409 1.162 2.442 1.919 2.137 0.691 0.926 1.795 1.005 0.329 0.853 2.725 0.932 0.730 1.320 1.015 1063 chr5 90597072 90630661 + 0 NA Intergenic AluJb|SINE|Alu -3647 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 0.312 1.810 0.064 0.644 1.320 2.585 1.518 1.118 3.622 1.470 1.173 0.757 0.886 1.501 1.469 2.015 0.638 1.695 0.060 0.111 1.895 1.311 0.198 2.700 1.509 1.140 0.558 0.784 0.459 1.551 1.532 0.940 1.439 0.902 2.930 1.007 0.483 1.596 0.803 0.637 1.795 1.736 1075 chr5 134359533 134376034 + 0 NA intron (NM_002653, intron 1 of 2) intron (NM_002653, intron 1 of 2) -1187 NM_001277348 100996485 NM_001277348 C5orf66 - chromosome 5 open reading frame 66 protein-coding 0.218 0.784 0.013 0.412 0.972 0.062 0.932 0.473 2.490 1.278 0.284 0.473 0.420 2.873 1.524 1.685 0.404 0.867 0.857 0.218 2.898 3.503 1.371 2.170 0.180 1.417 0.738 0.371 2.579 1.612 0.384 1.109 2.357 0.406 1.643 1.620 0.607 0.543 0.780 0.568 0.883 0.606 1151 chr6 85466854 85484965 + 0 NA Intergenic Intergenic -1955 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 1.488 0.485 2.359 0.648 1.500 1.169 0.192 0.035 0.722 0.457 0.072 0.137 0.079 0.006 0.053 0.028 1.591 0.675 0.023 0.019 0.012 0.448 0.531 2.192 0.033 0.026 0.034 0.065 3.315 3.164 0.167 0.007 1.337 0.015 0.474 0.221 1.657 0.009 0.034 0.019 0.008 632 chr17 59486224 59492077 + 0 NA promoter-TSS (NM_203425) promoter-TSS (NM_203425) 38 NM_203425 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 protein-coding 0.652 0.618 0.952 0.840 3.428 5.073 4.215 1.746 13.383 8.213 1.678 2.951 1.552 0.966 1.040 1.855 1.224 2.008 0.310 0.678 1.666 1.663 2.468 3.997 0.583 2.772 1.330 0.280 0.476 7.336 8.904 3.786 3.283 3.824 1.362 2.406 4.139 6.146 3.690 0.416 0.748 0.406 770 chr2 33577648 33591081 + 0 NA intron (NM_001166266, intron 21 of 28) intron (NM_001166266, intron 21 of 28) -59219 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 0.107 0.099 0.009 0.692 0.440 0.044 0.180 0.118 nan 0.205 0.121 0.603 2.503 0.100 0.115 0.106 0.007 0.179 0.052 0.016 0.017 0.036 0.080 0.130 0.022 0.023 0.029 0.332 0.109 0.058 0.059 0.086 0.140 0.173 0.015 0.112 0.059 0.065 0.074 0.017 0.011 838 chr20 3183315 3191570 + 0 NA Intergenic AluY|SINE|Alu -2072 NM_001324237 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 2.450 3.672 0.948 1.034 2.507 1.526 1.023 1.637 6.446 3.905 2.749 1.615 0.900 2.528 2.286 2.030 1.155 2.067 2.872 1.811 2.607 2.774 2.447 4.132 2.711 5.273 2.504 1.651 1.807 4.690 3.330 1.422 2.705 1.493 2.373 2.150 2.427 3.307 3.532 1.152 1.563 0.826 735 chr19 46383079 46391224 + 0 NA 3' UTR (NM_015649, exon 1 of 1) 3' UTR (NM_015649, exon 1 of 1) 2277 NM_015649 26145 Hs.515477 NM_015649 ENSG00000170604 IRF2BP1 - interferon regulatory factor 2 binding protein 1 protein-coding 3.822 2.764 0.471 0.788 2.463 5.680 1.688 0.440 nan 2.514 3.045 0.451 0.886 0.939 2.142 0.909 1.291 1.542 5.983 0.493 0.526 0.603 1.831 1.378 3.028 1.125 0.603 0.518 0.748 6.482 2.529 5.397 1.856 2.730 0.624 2.240 1.803 5.869 0.835 1.000 0.566 0.288 1339 chrX 153231765 153239923 + 0 NA TTS (NR_046608) TTS (NR_046608) 975 NM_005334 3054 Hs.83634 NM_005334 ENSG00000172534 HCFC1 CFF|HCF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF host cell factor C1 protein-coding 6.006 6.100 3.493 0.863 2.642 4.331 4.960 1.020 8.669 5.920 6.739 1.984 1.155 2.482 3.266 4.875 1.288 1.711 4.156 3.377 2.136 3.114 1.908 5.718 6.461 5.315 2.214 4.008 4.627 4.204 4.244 1.207 3.186 4.004 2.289 2.431 3.370 7.281 2.868 4.196 2.621 1.839 1299 chr9 37461994 37474566 + 0 NA Intergenic MER51A|LTR|ERV1 -2873 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 0.784 3.589 1.499 0.996 2.670 2.954 2.238 0.832 3.430 2.420 4.105 1.375 1.353 1.902 1.930 3.083 1.513 1.876 0.444 1.146 2.944 3.239 2.557 3.590 6.088 5.381 2.012 2.816 3.852 4.212 5.062 1.575 2.104 3.676 2.073 0.798 1.242 9.832 2.962 1.992 5.077 4.509 48 chr1 59278779 59291528 + 0 NA intron (NR_108106, intron 1 of 1) MIRb|SINE|MIR 34330 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 2.364 2.290 1.608 1.946 2.912 2.935 3.761 1.343 nan 1.802 3.220 2.350 1.282 1.784 3.841 3.879 1.138 1.499 1.529 0.033 1.620 1.778 0.719 0.916 3.309 1.486 0.619 2.119 4.961 1.404 2.081 2.198 2.190 3.352 4.063 1.288 1.543 2.332 1.070 2.537 0.822 0.490 1148 chr6 51352851 51362558 + 0 NA Intergenic MIR|SINE|MIR -128964 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.060 0.064 0.025 0.117 0.228 0.019 0.105 0.011 4.035 0.670 1.226 0.090 0.012 0.191 0.070 0.125 0.010 0.067 4.510 0.013 0.007 0.055 0.223 0.031 0.048 0.099 0.025 0.068 0.048 0.610 0.199 0.019 0.693 0.018 0.025 0.024 0.012 0.011 1192 chr7 26191016 26209314 + 0 NA intron (NM_004289, intron 1 of 3) MLT2C1|LTR|ERVL 8318 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 4.042 2.098 0.611 0.313 0.439 0.601 1.797 1.434 1.590 0.539 0.571 0.319 1.508 0.982 4.571 0.934 0.146 1.534 0.114 0.155 0.711 0.320 0.546 0.263 5.322 2.007 0.806 0.981 2.352 0.681 1.783 0.151 0.281 0.297 2.523 0.247 0.265 1.845 1.571 1.300 4.759 4.476 525 chr16 67239947 67248716 + 0 NA intron (NM_001004055, intron 2 of 6) intron (NM_001004055, intron 2 of 6) -8033 NR_029887 442901 NR_029887 ENSG00000207948 MIR328 MIRN328|hsa-mir-328|mir-328 microRNA 328 ncRNA 0.083 0.349 0.007 2.136 2.117 0.500 0.798 0.566 1.403 0.422 0.738 0.433 0.299 0.410 1.867 1.974 0.339 0.475 0.058 0.031 2.834 1.895 0.254 0.931 0.599 0.427 0.294 0.140 0.091 0.539 0.291 0.202 1.143 1.879 0.380 0.070 0.153 0.334 2.729 0.078 0.039 0.023 869 chr20 51099927 51111714 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -131557 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 0.140 0.317 5.519 1.037 1.241 0.145 1.310 0.054 2.444 1.846 0.424 0.570 0.532 0.317 0.252 0.066 0.231 0.095 0.042 0.014 0.017 0.012 0.050 0.463 0.852 0.046 0.033 0.150 0.237 0.062 0.049 0.014 0.085 3.301 0.038 0.324 0.049 0.044 0.127 0.374 0.010 0.021 759 chr2 16143904 16174882 + 0 NA Intergenic Intergenic -31156 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.719 0.052 0.042 0.001 0.041 0.016 0.064 3.960 0.717 1.124 0.014 0.015 0.028 0.066 0.060 0.043 0.048 0.116 0.023 0.005 0.041 0.058 0.163 0.029 0.020 0.030 0.161 0.126 0.039 0.122 0.279 0.035 0.024 0.280 0.142 0.076 0.038 0.037 0.032 0.020 175 chr10 104152424 104171245 + 0 NA TTS (NR_073110) TTS (NR_073110) 6481 NM_001322934 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 0.506 1.920 0.643 0.292 0.758 2.424 0.556 0.361 0.897 0.573 0.436 0.077 0.276 0.760 0.378 0.641 0.515 0.588 0.382 0.450 0.447 0.418 0.920 0.741 3.002 1.824 0.878 0.232 0.409 1.484 1.696 0.374 0.684 1.530 1.093 0.497 0.637 4.976 0.451 0.316 0.514 0.263 1280 chr8 129085809 129093257 + 0 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 28135 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 1.163 0.850 0.017 1.188 2.347 0.633 2.128 2.382 1.704 1.041 0.228 0.824 0.891 1.952 1.568 2.687 0.426 32.131 0.040 0.038 1.466 0.708 0.141 0.830 5.743 0.210 0.188 0.880 0.746 0.378 0.966 0.107 0.302 3.034 5.424 0.033 0.588 1.649 14.099 0.512 0.432 0.254 1005 chr4 77114663 77141308 + 0 NA intron (NM_005506, intron 1 of 11) intron (NM_005506, intron 1 of 11) 7067 NM_001204255 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 0.656 1.320 0.117 0.492 1.168 0.363 0.919 0.687 4.988 2.212 1.424 0.615 0.390 1.068 0.773 1.254 0.198 1.054 1.045 0.141 0.945 0.599 0.445 0.444 0.784 0.348 0.214 0.785 1.267 0.567 0.577 0.784 0.817 1.287 0.640 0.444 0.491 0.575 0.549 0.312 0.073 0.046 1002 chr4 57588897 57631804 + 0 NA Intergenic MER119|DNA|hAT-Charlie -62478 NM_032495 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 0.319 0.424 0.067 0.376 0.696 0.022 1.370 0.935 3.311 0.944 2.121 0.637 0.891 1.004 0.538 1.095 0.025 0.801 0.104 0.025 0.933 0.653 0.033 0.078 0.200 0.138 0.095 0.670 0.551 0.091 0.046 0.103 0.354 0.799 2.883 0.157 0.067 0.131 0.295 0.223 0.032 0.018 781 chr2 70348409 70371920 + 0 NA Intergenic L2a|LINE|L2 -7716 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 1.499 2.491 1.419 0.935 2.161 2.972 2.719 1.192 7.035 3.531 2.179 1.399 1.631 1.602 2.678 2.769 2.005 2.970 1.041 2.589 2.566 2.510 1.912 5.673 1.773 1.583 0.828 1.526 4.302 4.727 2.668 3.033 3.090 3.785 2.816 1.483 3.244 3.499 1.882 1.947 2.949 3.291 1276 chr8 128429712 128441981 + 0 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 7989 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 0.153 0.157 0.031 0.103 0.066 0.093 0.060 0.234 0.078 0.128 0.083 0.029 0.086 0.236 0.092 0.023 0.045 0.082 0.085 0.018 0.024 0.040 0.150 0.039 0.028 0.205 0.153 0.378 0.052 0.078 3.886 0.117 0.089 0.185 0.149 0.061 0.540 0.037 0.179 0.017 618 chr17 44655185 44669387 + 0 NA Intergenic Intergenic -5198 NM_001288812 51326 Hs.559259 NM_016632 ENSG00000185829 ARL17A ARF1P2|ARL17P1 ADP ribosylation factor like GTPase 17A protein-coding 2.804 1.672 1.239 0.533 1.120 0.714 0.836 0.790 nan 2.469 1.395 0.885 0.465 1.232 4.624 3.080 2.383 2.077 0.528 0.527 1.509 1.731 0.986 2.323 2.696 0.826 0.400 0.660 1.162 1.723 3.404 1.365 2.831 1.159 1.394 2.424 1.711 2.912 0.627 0.787 0.876 0.506 1243 chr8 59504787 59511084 + 0 NA intron (NM_003580, intron 22 of 30) intron (NM_003580, intron 22 of 30) 42207 NM_001007069 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 0.307 1.938 0.039 1.746 2.419 0.271 0.900 0.922 0.307 0.129 0.569 1.092 1.478 1.611 0.981 1.612 0.015 1.635 0.064 0.087 3.370 3.668 0.083 9.895 0.279 0.511 0.215 1.240 6.614 0.293 0.521 5.293 0.541 0.336 0.249 0.719 0.062 0.064 1.462 1.427 0.462 0.474 1095 chr6 1310009 1329068 + 0 NA Intergenic AluSp|SINE|Alu 6863 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 2.478 0.489 0.016 0.110 0.061 0.020 1.523 2.112 1.041 0.663 2.747 0.368 1.066 0.308 3.784 3.769 0.151 1.181 0.037 0.059 3.102 3.040 0.027 2.395 0.170 0.288 0.216 0.112 0.867 0.995 0.115 2.939 1.488 0.049 0.287 1.684 0.158 0.343 0.701 2.274 0.030 0.035 272 chr11 128087399 128093963 + 0 NA Intergenic AluJb|SINE|Alu 301524 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 0.196 0.195 5.213 0.088 0.276 0.201 0.050 0.325 0.122 0.073 0.085 0.201 0.195 0.347 0.218 0.414 0.775 0.195 0.031 0.021 0.203 0.132 1.302 0.033 0.380 0.093 0.224 0.124 0.305 0.186 0.347 0.048 0.152 0.065 2.023 0.074 0.240 0.115 0.125 0.093 0.237 0.108 681 chr19 952135 958209 + 0 NA intron (NM_005224, intron 3 of 8) intron (NM_005224, intron 3 of 8) 29135 NM_005224 1820 Hs.501296 NM_005224 ENSG00000116017 ARID3A BRIGHT|DRIL1|DRIL3|E2FBP1 AT-rich interaction domain 3A protein-coding 0.607 0.292 6.439 0.565 1.479 0.160 0.067 0.573 3.368 1.003 1.183 0.266 0.194 0.101 3.051 2.092 3.306 0.224 0.098 0.182 0.046 0.036 0.853 0.193 0.227 0.596 0.377 0.581 0.196 0.512 0.440 0.064 0.493 3.847 0.174 0.499 1.599 0.880 0.210 0.226 0.351 0.100 359 chr12 122499944 122504577 + 0 NA intron (NR_135044, intron 1 of 3) MLT1K|LTR|ERVL-MaLR 1064 NR_135044 100506691 Hs.536336 NR_135044 ENSG00000256546 LOC100506691 - uncharacterized LOC100506691 ncRNA 0.541 3.281 0.041 1.665 3.135 0.644 1.283 0.810 7.527 2.301 1.557 4.900 1.760 1.180 3.129 3.971 0.124 3.469 3.232 0.030 2.285 1.801 1.713 3.740 0.395 0.534 0.287 2.381 0.777 3.724 2.548 0.836 1.912 2.149 2.038 0.625 1.131 0.539 3.604 1.385 0.044 0.022 955 chr3 124575444 124608498 + 0 NA intron (NM_002213, intron 2 of 14) intron (NM_002213, intron 2 of 14) 14181 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 1.472 0.579 0.080 0.402 0.756 5.453 1.835 0.445 3.389 2.313 0.740 0.641 0.590 0.621 0.804 2.508 0.387 2.427 0.282 0.122 1.261 0.912 0.313 0.616 1.172 0.663 0.392 0.405 2.058 3.743 1.742 1.315 1.444 0.720 3.363 0.406 1.477 1.372 0.561 0.578 2.896 3.066 159 chr10 32214687 32237646 + 0 NA Intergenic MER101-int|LTR|ERV1 -8362 NM_001270696 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 2.197 2.457 0.705 0.932 2.599 4.769 2.376 1.371 3.367 1.827 1.897 1.029 1.734 1.362 2.140 2.687 1.400 2.323 0.100 1.336 2.085 1.649 1.078 3.995 2.213 1.865 0.908 3.012 2.417 3.951 1.944 1.817 2.935 3.007 3.189 1.653 2.083 2.068 1.438 1.300 4.007 4.103 150 chr1 246459874 246491336 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 105109 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 0.096 0.247 0.022 0.201 0.295 0.042 0.104 0.100 0.173 0.101 0.128 0.056 0.053 0.065 0.126 0.646 0.003 0.979 0.038 0.031 0.647 0.386 0.057 11.070 0.096 0.051 0.027 0.132 0.509 0.214 0.011 0.163 0.708 0.102 0.144 0.946 0.095 0.031 0.287 0.043 0.053 0.016 105 chr1 155902511 155916919 + 0 NA Intergenic AluSx1|SINE|Alu -1765 NM_181885 339403 Hs.449914 NM_181885 ENSG00000173080 RXFP4 GPCR142|GPR100|RLN3R2|RXFPR4 relaxin/insulin like family peptide receptor 4 protein-coding 1.595 1.677 0.462 0.853 1.848 3.661 1.063 0.945 5.154 2.966 3.467 1.594 2.155 1.849 1.599 2.432 0.715 2.174 4.453 1.048 2.271 2.055 0.728 4.742 2.879 1.793 0.940 0.699 1.012 2.538 2.000 0.874 1.428 1.972 3.975 1.902 0.620 4.101 2.461 1.160 0.797 0.527 29 chr1 33279072 33285712 + 0 NA promoter-TSS (NM_022753) promoter-TSS (NM_022753) -651 NM_001256121 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 5.656 4.496 1.718 1.463 4.449 3.847 4.682 1.574 10.995 6.648 4.095 2.624 1.658 2.541 3.507 3.241 2.004 3.808 2.099 5.113 2.170 2.578 2.519 3.663 6.296 3.662 1.894 1.803 4.546 2.909 5.247 2.137 2.112 4.144 7.329 1.679 1.272 5.577 2.510 2.200 3.304 2.022 1109 chr6 21584941 21601127 + 0 NA promoter-TSS (NM_003107) promoter-TSS (NM_003107) -938 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box 4 protein-coding 5.018 1.898 2.466 0.798 2.849 4.056 3.246 1.350 7.052 5.474 6.941 2.023 1.296 1.229 2.421 1.402 0.985 1.439 2.868 2.820 2.287 3.376 0.395 0.848 0.956 0.776 0.464 2.108 1.035 2.278 3.687 1.545 2.495 4.171 1.332 1.436 2.149 3.425 1.389 1.978 1.395 1.402 568 chr17 16904339 16991269 + 0 NA intron (NM_201274, intron 1 of 23) MIRc|SINE|MIR 1730 NM_015134 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 0.829 0.716 1.435 0.581 1.292 1.301 1.032 0.926 6.508 3.171 3.410 1.055 0.973 1.266 1.936 2.319 0.920 1.299 0.128 0.085 0.666 0.560 0.142 0.364 1.869 0.944 0.515 1.701 0.736 3.225 0.322 0.346 1.421 2.011 1.849 1.523 2.091 0.285 0.976 1.233 0.487 0.389 17 chr1 14082310 14090245 + 0 NA intron (NM_001135610, intron 6 of 7) intron (NM_001135610, intron 6 of 7) 10401 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 1.144 0.156 4.483 0.604 1.496 0.040 0.774 0.738 1.608 1.167 1.975 0.368 0.088 0.401 1.338 1.076 0.771 0.222 0.075 0.054 0.227 0.046 0.056 0.178 0.058 0.038 0.029 0.438 0.089 0.092 0.130 0.056 0.971 1.383 0.094 0.525 1.328 0.037 0.100 0.057 0.015 0.013 740 chr19 48892877 48904338 + 0 NA intron (NM_000836, intron 1 of 12) intron (NM_000836, intron 1 of 12) 475 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|EIEE46|GluN2D|NMDAR2D|NR2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding 1.849 5.170 0.178 0.578 2.266 1.833 2.215 0.577 nan 1.383 2.171 1.166 0.226 0.817 2.701 1.286 1.463 2.733 0.695 0.554 0.995 1.081 1.099 1.462 2.719 1.545 0.873 0.832 1.012 5.467 4.912 1.190 1.236 2.961 1.355 0.663 1.760 5.188 1.361 0.776 1.051 0.720 149 chr1 245024342 245033992 + 0 NA Intergenic Intergenic -1340 NM_031844 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding 3.342 3.325 1.891 1.001 3.955 3.457 4.838 2.091 5.511 3.552 4.380 1.287 0.916 2.966 2.754 2.661 1.265 3.036 1.154 4.009 4.416 6.156 1.832 7.863 5.390 4.598 1.858 2.612 4.532 3.805 3.735 2.997 5.641 5.061 2.874 1.711 3.205 3.202 4.262 1.492 2.358 1.618 767 chr2 28597147 28636649 + 0 NA intron (NM_005253, intron 1 of 3) intron (NM_005253, intron 1 of 3) 641 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 1.547 3.785 0.656 1.183 2.570 2.274 3.453 1.239 5.380 2.316 1.488 1.314 1.623 1.568 2.310 2.266 0.955 2.327 0.328 0.575 1.123 1.415 0.976 1.192 4.131 1.350 0.615 0.922 3.467 2.769 1.781 2.834 3.349 3.262 2.245 2.217 1.303 2.737 1.636 3.025 4.050 3.844 340 chr12 58816900 58822087 + 0 NA Intergenic Intergenic -165991 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 4.849 1.253 0.443 1.900 2.879 0.968 3.261 4.320 6.303 4.632 3.609 4.988 4.229 2.709 1.618 2.862 0.479 3.188 0.154 0.034 4.595 3.957 0.100 3.774 0.231 0.536 0.392 3.812 6.582 1.983 0.138 2.802 4.336 3.056 26.458 2.830 2.465 0.091 3.558 3.183 2.664 3.502 580 chr17 35274280 35286343 + 0 NA intron (NR_135670, intron 1 of 1) intron (NR_135670, intron 1 of 1) 13649 NR_135670 102723471 Hs.567930 NR_135668 ENSG00000277268 LOC102723471 - uncharacterized LOC102723471 ncRNA 5.130 1.751 2.845 4.455 0.079 2.893 2.070 3.582 2.022 1.086 3.090 2.526 2.999 5.712 5.712 2.249 1.879 0.059 0.252 3.792 4.145 0.105 0.321 9.106 1.126 0.422 3.023 1.619 1.371 0.634 0.045 1.393 3.251 3.016 0.385 0.457 0.863 3.385 1.630 0.019 0.034 1267 chr8 103664131 103671714 + 0 NA 5' UTR (NM_005655, exon 1 of 4) 5' UTR (NM_005655, exon 1 of 4) 208 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 2.983 7.854 3.117 1.678 5.124 3.273 5.909 2.040 6.055 4.126 4.679 3.144 2.916 2.224 3.790 4.113 3.037 2.640 2.223 1.788 2.234 3.110 2.586 3.364 4.244 6.043 2.516 4.592 4.423 6.007 8.064 1.989 3.262 6.841 4.136 1.098 3.226 5.786 1.230 3.122 2.396 1.318 1327 chr9 139733934 139746409 + 0 NA exon (NM_001080482, exon 1 of 1) exon (NM_001080482, exon 1 of 1) 1304 NM_001080482 389813 Hs.495485 NM_001080482 ENSG00000232434 C9orf172 - chromosome 9 open reading frame 172 protein-coding 1.430 4.288 0.303 0.835 2.631 1.181 4.408 1.100 5.780 3.905 1.365 1.857 1.017 0.864 1.695 1.230 1.264 1.121 1.355 0.920 1.286 1.801 1.664 2.965 3.962 1.285 0.706 1.268 1.219 4.065 4.616 1.515 1.882 2.079 1.453 1.050 2.685 5.968 2.295 1.805 1.322 0.647 509 chr16 30102066 30108480 + 0 NA intron (NM_031477, intron 3 of 3) MIRc|SINE|MIR -2068 NM_004608 6911 Hs.198301 NM_004608 ENSG00000149922 TBX6 SCDO5 T-box 6 protein-coding 3.641 3.109 1.961 1.192 3.514 1.262 2.995 0.865 9.267 4.005 2.976 1.579 0.408 3.092 4.057 2.296 1.505 1.160 6.985 0.130 1.160 1.081 1.768 1.473 1.396 0.631 0.488 1.592 0.617 2.497 2.115 1.857 4.755 4.049 2.193 1.627 3.515 2.475 1.212 0.368 0.153 0.110 677 chr18 53155844 53181658 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) 9249 NM_001243231 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 0.212 0.428 0.002 0.022 0.047 0.017 0.042 0.012 0.030 0.031 0.044 0.091 0.119 0.035 0.166 0.052 0.008 2.337 0.059 0.021 0.080 0.023 0.052 0.878 0.295 0.037 0.057 0.033 2.372 0.035 0.360 0.009 0.022 0.036 0.018 0.019 0.010 0.061 0.065 0.346 0.011 0.016 123 chr1 172851812 172890024 + 0 NA Intergenic Intergenic 149185 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 1.275 0.415 0.011 0.442 0.847 0.191 0.457 1.461 0.671 0.162 0.169 1.116 0.569 0.789 0.204 1.868 0.160 2.972 0.028 0.015 0.981 0.358 0.129 2.709 0.617 1.076 0.624 0.308 1.294 0.488 0.164 0.097 0.314 0.820 0.455 0.406 0.078 0.143 0.424 0.966 0.457 0.423 755 chr2 9935795 9985198 + 0 NA Intergenic (TGGGGG)n|Simple_repeat|Simple_repeat -23075 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 0.600 0.802 0.282 0.476 0.759 0.273 0.789 0.607 6.020 1.615 1.214 0.664 0.246 1.206 2.186 1.781 0.755 0.575 0.125 0.191 0.312 0.175 0.294 0.321 2.021 0.529 0.294 0.885 0.526 0.695 0.540 0.246 1.099 0.995 0.498 0.527 0.946 0.692 0.735 0.601 0.199 0.109 556 chr17 7116987 7125458 + 0 NA promoter-TSS (NM_001128827) promoter-TSS (NM_001128827) -274 NM_001321075 1742 Hs.463928 NM_001365 ENSG00000132535 DLG4 PSD95|SAP-90|SAP90 discs large MAGUK scaffold protein 4 protein-coding 0.916 2.564 0.773 0.785 2.700 4.089 1.015 0.288 3.259 1.651 1.996 0.673 0.963 1.042 1.406 1.264 1.005 1.675 0.717 1.585 0.475 0.373 1.603 2.173 2.634 1.353 0.839 0.940 1.316 4.389 5.084 1.346 0.956 3.510 2.950 1.053 1.502 8.007 2.008 1.840 1.135 0.695 799 chr2 159971093 160014588 + 0 NA intron (NM_001145909, intron 5 of 26) intron (NM_001145909, intron 5 of 26) -50506 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 0.330 0.609 1.149 0.625 0.904 0.111 0.830 0.849 2.523 1.114 1.686 0.656 0.594 0.430 0.410 1.211 0.059 1.371 0.051 0.030 2.134 1.593 0.115 2.057 0.407 0.236 0.118 0.746 0.201 0.258 0.358 0.136 0.429 1.136 1.416 0.535 0.216 0.172 0.290 0.411 0.036 0.018 321 chr12 53885295 53899551 + 0 NA intron (NM_006301, intron 1 of 14) intron (NM_006301, intron 1 of 14) 1021 NM_006301 7786 Hs.713539 NM_006301 ENSG00000139625 MAP3K12 DLK|MEKK12|MUK|ZPK|ZPKP1 mitogen-activated protein kinase kinase kinase 12 protein-coding 0.908 2.808 1.390 0.413 1.150 3.275 1.080 0.614 3.991 2.060 1.343 0.737 1.022 0.866 1.935 1.265 0.951 3.155 1.105 1.896 1.698 1.640 2.506 1.931 2.428 1.425 0.671 0.753 2.505 3.574 3.652 1.590 1.547 1.393 1.518 0.857 1.691 3.319 1.977 1.163 1.135 0.717 745 chr19 49540451 49547946 + 0 NA Intergenic AluSx1|SINE|Alu -2904 NM_033043 93659 Hs.172944 NM_033043 ENSG00000189052 CGB5 CGB|HCG|hCGB chorionic gonadotropin beta subunit 5 protein-coding 11.102 0.918 0.041 1.069 0.732 0.042 0.262 1.376 nan 0.247 0.173 2.652 0.407 1.003 0.462 3.528 0.419 2.151 0.081 0.009 0.038 0.286 0.086 1.474 0.371 0.195 0.444 1.091 0.350 0.391 0.053 0.178 1.068 0.140 0.245 0.147 0.247 0.967 0.749 0.269 0.162 1029 chr5 371586 379962 + 0 NA intron (NM_020731, intron 3 of 11) intron (NM_020731, intron 3 of 11) 67501 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 0.651 1.677 0.066 0.379 1.045 0.121 0.096 0.102 10.618 1.705 1.417 0.392 1.214 0.039 0.138 1.407 0.080 2.407 5.082 0.116 0.811 0.354 0.104 1.086 0.198 1.540 0.748 0.467 0.346 0.949 0.956 0.804 2.184 2.225 0.026 0.044 0.501 0.188 0.446 0.773 3.688 3.937 945 chr3 57093099 57104427 + 0 NA intron (NM_181727, intron 1 of 1) L1MB2|LINE|L1 4294 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 1.038 1.033 0.306 1.506 2.361 0.050 3.356 2.160 2.450 0.573 0.479 1.252 0.450 1.380 2.083 3.228 1.474 1.684 0.063 0.073 1.051 0.809 0.066 0.574 1.236 0.673 0.385 1.514 2.006 1.107 1.164 0.791 1.559 3.214 1.109 1.230 0.291 0.144 2.744 0.539 1.815 1.669 414 chr14 55912823 55928712 + 0 NA Intergenic Intergenic -13504 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 0.231 0.309 0.036 0.716 1.096 0.805 0.783 0.332 3.418 0.689 0.752 0.919 0.804 0.465 1.292 1.718 0.224 1.736 0.064 0.070 3.777 2.802 0.105 2.235 1.487 0.469 0.225 1.763 2.625 0.744 0.931 0.432 2.070 0.875 1.730 0.523 0.417 4.052 2.737 0.495 0.758 0.863 25 chr1 26448485 26455281 + 0 NA 3' UTR (NM_001243533, exon 4 of 4) 3' UTR (NM_001243533, exon 4 of 4) 13615 NM_001243533 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 2.884 1.288 1.291 1.764 2.855 0.064 5.618 1.936 8.583 1.827 4.419 2.697 1.127 2.375 2.402 3.289 1.819 2.651 0.059 0.041 2.485 2.416 0.366 2.989 0.145 0.188 0.127 2.372 4.645 0.357 0.180 1.197 3.128 2.584 4.383 1.007 2.308 0.077 2.322 1.854 0.087 0.023 734 chr19 46267137 46276607 + 0 NA exon (NM_175875, exon 1 of 3) exon (NM_175875, exon 1 of 3) 625 NM_175875 147912 Hs.43314 NM_175875 ENSG00000177045 SIX5 BOR2|DMAHP SIX homeobox 5 protein-coding 1.621 5.033 0.210 0.843 2.799 2.956 1.735 0.578 nan 2.059 2.959 0.700 1.438 0.853 1.959 0.893 1.290 1.502 1.187 2.037 0.877 1.153 3.359 1.301 7.014 2.047 0.911 0.549 1.700 5.656 10.386 2.747 1.580 2.573 1.100 0.982 1.690 6.567 1.478 1.175 1.059 0.553 521 chr16 57218206 57235393 + 0 NA intron (NM_001305163, intron 1 of 14) AluJb|SINE|Alu 6603 NM_001305164 89970 Hs.460885 NM_133368 ENSG00000159579 RSPRY1 SEMDFA ring finger and SPRY domain containing 1 protein-coding 1.724 2.962 0.481 0.507 1.576 5.821 2.209 0.799 2.090 1.277 1.486 1.634 1.049 2.767 1.434 3.349 0.886 1.431 1.253 0.582 2.125 1.764 1.485 2.377 2.829 5.511 2.385 1.719 1.982 1.533 2.037 1.014 1.407 2.772 5.689 0.343 0.598 1.225 2.564 1.403 1.545 1.262 696 chr19 13146483 13173212 + 0 NA intron (NM_001271043, intron 2 of 10) AluSz|SINE|Alu 24452 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 3.056 0.937 0.090 0.171 0.160 0.101 0.523 0.956 nan 0.320 0.140 0.487 1.017 0.098 0.137 1.562 0.810 1.863 0.034 0.187 0.137 0.057 0.550 0.369 2.538 1.020 0.590 0.063 5.836 0.378 1.646 0.056 0.116 0.310 0.077 0.056 0.403 0.400 1.632 2.232 1.610 1.003 40 chr1 54868689 54878153 + 0 NA Intergenic Intergenic -1353 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 0.805 2.362 1.425 1.380 3.798 1.229 1.343 0.701 nan 1.670 1.330 0.964 0.635 1.189 1.046 1.716 0.892 1.453 1.062 1.975 1.095 0.776 1.968 1.361 2.296 0.529 0.348 1.889 1.416 2.365 2.368 0.791 1.438 3.000 0.542 0.751 1.805 3.380 0.899 1.056 0.438 0.225 1311 chr9 110801782 110822312 + 0 NA Intergenic Intergenic -560046 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.504 0.444 0.021 1.249 1.706 0.160 1.237 0.665 nan 0.899 0.289 0.824 0.396 1.614 0.415 1.782 0.505 0.859 0.010 0.007 0.675 0.347 0.067 1.031 1.922 0.725 0.465 0.419 2.015 0.334 0.350 0.323 0.926 1.030 0.250 1.265 0.756 0.395 0.587 0.259 0.182 0.179 455 chr15 67325552 67345920 + 0 NA intron (NR_135686, intron 2 of 5) AluJb|SINE|Alu 20784 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 0.843 1.730 0.403 0.765 0.892 2.060 0.815 1.937 2.349 0.761 0.839 1.061 0.466 1.494 1.166 1.871 1.247 1.870 0.241 0.021 1.314 0.833 0.757 3.195 3.695 0.704 0.398 0.769 0.767 3.410 1.555 2.472 1.799 1.184 1.413 1.556 0.789 4.520 0.736 0.921 0.393 0.145 1060 chr5 72659382 72671966 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 78678 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 0.730 0.472 0.034 0.752 1.322 0.446 2.571 5.055 4.447 1.926 1.196 1.403 1.624 1.381 0.957 4.314 0.069 1.213 0.024 0.022 3.093 1.896 0.351 0.504 3.076 2.961 1.364 0.492 3.461 0.189 2.762 0.063 0.100 1.356 4.550 0.985 0.046 1.942 1.472 1.552 5.495 4.805 1304 chr9 100546428 100572158 + 0 NA Intergenic SVA_D|Other|Other -56244 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 0.709 0.266 0.352 0.803 1.772 0.220 1.392 1.048 1.254 0.574 0.576 0.858 0.133 0.560 0.569 1.846 0.215 0.090 0.038 0.054 1.206 0.590 0.168 0.136 1.239 0.225 0.142 0.782 0.251 0.358 0.269 0.141 0.615 5.115 0.086 0.347 0.157 0.395 0.417 0.156 0.265 0.193 644 chr17 73860823 73875774 + 0 NA Intergenic AluY|SINE|Alu 6358 NM_033452 91107 Hs.293660 NM_033452 ENSG00000132481 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 3.260 3.887 0.056 1.710 5.276 2.294 3.988 1.477 12.299 4.964 2.473 4.053 1.707 2.530 1.689 3.544 1.279 0.829 1.356 0.157 2.248 2.845 0.645 5.490 4.155 1.192 0.581 1.708 2.440 4.938 2.319 1.182 2.206 5.339 2.576 1.364 2.882 3.567 1.714 1.163 0.378 0.171 153 chr10 3843094 3857236 + 0 NA Intergenic MIRb|SINE|MIR -22692 NR_027653 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 2.978 1.619 0.302 2.442 4.063 1.609 4.086 2.934 1.946 0.821 1.413 1.893 2.553 3.968 0.710 3.688 0.952 6.096 0.399 0.097 3.260 2.660 0.135 1.101 2.650 2.110 0.977 1.392 5.675 1.324 2.845 3.895 2.090 4.570 4.106 1.504 1.658 6.806 3.896 4.701 7.387 8.208 38 chr1 47644441 47659502 + 0 NA intron (NM_005764, intron 2 of 3) AluSq2|SINE|Alu 3800 NM_005764 10158 Hs.431099 NM_005764 ENSG00000162366 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 1.057 0.171 0.074 1.317 1.275 0.354 0.658 1.041 3.601 0.764 0.182 0.086 0.166 4.459 0.147 1.177 0.143 0.264 2.059 0.230 1.030 0.688 0.210 0.127 0.208 0.236 0.161 1.619 0.295 0.766 0.124 1.127 2.477 0.288 0.260 0.527 0.219 0.410 0.338 0.104 0.164 0.037 319 chr12 53608394 53619477 + 0 NA exon (NM_001243732, exon 1 of 7) exon (NM_001243732, exon 1 of 7) 262 NM_001042728 5916 Hs.1497 NM_000966 ENSG00000172819 RARG NR1B3|RARC retinoic acid receptor gamma protein-coding 1.453 4.020 1.121 1.632 4.017 2.508 2.333 1.329 5.664 3.032 2.019 2.586 1.476 1.445 2.079 4.709 1.721 1.459 0.664 2.517 2.216 2.394 1.866 2.107 2.937 1.478 0.823 1.499 5.366 4.099 4.415 2.897 4.824 2.655 4.429 1.621 2.183 3.961 3.055 3.188 0.677 0.336 1114 chr6 31146830 31156520 + 0 NA Intergenic Harlequin-int|LTR|ERV1 -5999 NR_026816 100130889 Hs.670091 NM_001134284 ENSG00000204528 PSORS1C3 NCRNA00196 psoriasis susceptibility 1 candidate 3 (non-protein coding) ncRNA 4.910 0.216 0.038 0.069 0.154 4.719 0.077 0.022 0.263 0.117 0.445 0.031 0.012 0.150 0.111 0.167 0.038 0.392 0.061 0.029 0.999 0.773 0.007 0.092 1.120 0.054 0.049 0.048 0.312 1.803 0.119 0.187 0.217 0.099 0.257 0.037 0.103 0.139 0.076 0.024 0.020 1087 chr5 172134207 172145629 + 0 NA Intergenic L2c|LINE|L2 -42588 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 0.301 0.300 0.049 0.183 0.176 3.390 0.210 0.378 1.127 0.348 0.217 0.115 0.207 0.468 0.210 0.385 0.269 0.236 0.226 0.049 0.448 0.151 0.710 0.788 1.214 0.283 0.164 0.084 0.490 1.319 0.503 3.563 1.449 0.405 1.025 0.746 1.878 0.781 0.097 0.085 0.172 0.114 412 chr14 50372436 50382908 + 0 NA Intergenic L1PA17|LINE|L1 17936 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 1.088 0.819 1.078 1.286 3.142 0.623 1.605 1.611 4.053 1.571 2.676 3.257 2.235 2.487 0.938 4.393 0.817 2.448 0.057 6.290 5.779 0.126 0.926 1.031 1.515 0.833 1.963 2.850 1.192 1.197 0.219 2.218 3.716 4.615 0.925 0.700 0.472 2.256 2.865 0.467 0.466 1198 chr7 36942149 36954725 + 0 NA intron (NM_001206482, intron 16 of 21) intron (NM_001206482, intron 16 of 21) 10600 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 0.109 0.093 0.005 0.075 0.015 0.135 0.044 0.069 0.102 0.116 0.058 0.028 0.035 0.031 0.029 0.023 0.073 1.258 0.033 0.044 0.023 0.014 0.132 0.088 0.015 0.019 0.092 0.195 0.110 0.059 3.563 0.111 0.062 0.044 0.749 0.026 0.084 0.063 0.018 0.018 0.020 1225 chr7 150943864 150950400 + 0 NA intron (NM_001003802, intron 2 of 13) intron (NM_001003802, intron 2 of 13) -1383 NM_001003801 6604 Hs.647067 NM_003078 ENSG00000082014 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 0.449 3.341 0.171 0.320 0.709 0.713 1.211 0.384 1.839 0.971 2.107 0.179 0.848 0.218 0.249 0.447 0.295 2.639 0.227 2.689 1.190 1.182 2.637 6.245 0.448 0.509 0.442 0.087 1.925 3.735 2.830 5.033 1.058 0.408 2.418 0.730 0.745 8.751 0.534 0.977 1.313 0.959 1272 chr8 119848842 119864085 + 0 NA Intergenic Intergenic 107920 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 0.345 1.414 0.024 0.449 0.849 0.243 0.815 1.910 2.850 0.587 0.720 1.754 0.139 0.815 1.014 1.293 0.150 0.484 0.146 0.598 0.185 0.005 0.117 0.200 0.265 0.250 0.337 0.558 0.198 0.047 0.037 0.293 0.597 0.097 1.519 0.602 0.118 0.632 0.545 0.042 0.013 1081 chr5 142189710 142212414 + 0 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 47413 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 1.595 1.046 0.238 1.170 1.711 0.840 0.531 1.370 2.544 0.596 0.398 1.523 1.710 2.635 1.291 3.828 0.804 3.158 0.031 0.018 1.980 1.070 0.180 0.119 3.490 0.574 0.319 0.769 0.529 2.166 0.323 1.319 1.398 0.964 2.403 0.659 0.223 0.234 1.590 1.843 1.218 0.971 305 chr12 26303276 26308451 + 0 NA Intergenic L2a|LINE|L2 -27860 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 1.607 1.109 0.024 0.878 1.863 0.378 1.948 0.918 1.965 0.793 0.880 1.449 6.883 0.878 1.915 2.056 6.220 0.027 1.725 0.671 0.056 0.095 0.694 0.174 0.121 0.433 3.678 0.173 1.102 1.018 0.374 1.577 3.443 0.218 0.224 0.461 0.758 3.089 0.612 0.379 876 chr20 61845705 61873582 + 0 NA Intergenic AluSx|SINE|Alu -7592 NM_022161 79444 Hs.256126 NM_022161 ENSG00000101197 BIRC7 KIAP|LIVIN|ML-IAP|MLIAP|RNF50 baculoviral IAP repeat containing 7 protein-coding 1.497 0.714 0.306 0.851 1.129 1.043 7.681 1.382 5.151 1.699 0.892 0.514 1.514 1.694 1.003 1.294 0.605 1.143 0.377 0.498 2.041 1.933 0.873 2.915 2.365 0.834 0.503 1.224 0.996 4.324 0.736 0.775 1.566 0.840 2.326 0.521 1.250 2.805 1.479 0.417 0.572 0.498 368 chr12 125196512 125236409 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR 132059 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 0.633 0.170 0.062 0.500 0.751 0.334 0.095 0.335 3.696 1.099 0.452 0.761 0.134 0.251 0.811 0.945 0.640 0.712 0.090 0.073 1.195 0.719 0.144 1.302 0.547 0.200 0.134 0.376 0.591 1.224 0.508 0.241 0.767 1.336 0.121 0.705 0.507 0.933 0.420 0.621 0.175 0.113 31 chr1 38271923 38275410 + 0 NA exon (NM_024640, exon 1 of 5) exon (NM_024640, exon 1 of 5) 193 NM_001142726 127687 Hs.532749 NM_198446 ENSG00000197982 C1orf122 ALAESM chromosome 1 open reading frame 122 protein-coding 3.984 4.513 0.780 0.706 2.783 3.964 3.511 0.541 5.293 5.071 3.498 1.134 0.952 2.070 3.164 3.903 1.318 2.321 3.141 2.345 1.426 2.041 2.922 2.219 5.768 3.199 1.581 1.015 3.176 3.655 5.562 1.587 1.889 5.447 3.537 7.104 3.653 9.107 1.305 1.985 2.653 1.610 895 chr21 36625467 36630215 + 0 NA Intergenic L2c|LINE|L2 -206246 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 3.988 0.384 6.835 2.188 3.729 0.776 2.115 1.926 3.080 3.086 4.165 1.810 2.044 2.535 2.371 2.965 3.256 1.899 0.086 1.991 1.164 0.061 2.753 1.480 0.430 0.222 2.011 1.958 0.206 1.661 2.076 3.088 2.116 4.123 1.734 3.409 0.907 1.880 1.378 0.721 0.612 1097 chr6 1623625 1642513 + 0 NA intron (NM_001500, intron 9 of 10) AluJr|SINE|Alu 22388 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 0.271 0.087 0.035 0.304 0.701 0.046 0.337 0.267 3.504 1.566 3.027 0.318 0.075 0.339 0.851 0.744 0.038 0.355 0.137 0.044 0.500 0.311 0.298 0.138 0.192 0.080 0.063 0.130 0.242 0.213 0.196 0.067 0.346 0.593 0.084 0.421 0.293 0.423 0.560 0.049 0.021 0.003 1113 chr6 30897905 30903105 + 0 NA promoter-TSS (NM_205854).3 promoter-TSS (NM_205854).3 -553 NM_205854 389376 Hs.211267 NM_205854 ENSG00000196260 SFTA2 GSGL541|SFTPG|SP-G|UNQ541 surfactant associated 2 protein-coding 4.920 0.060 0.012 0.146 0.598 0.073 1.441 5.754 1.837 0.123 7.724 0.056 2.961 0.240 2.256 0.037 0.080 0.038 0.853 0.393 0.042 0.042 0.159 0.081 0.026 5.941 0.223 0.293 0.122 0.121 0.598 0.218 0.090 0.259 0.121 0.112 0.127 0.043 1318 chr9 127619485 127636432 + 0 NA intron (NM_030978, intron 2 of 5) AluSx1|SINE|Alu 3561 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding 1.704 2.069 0.597 1.512 4.487 1.548 5.518 1.113 4.545 2.959 1.883 1.645 0.961 2.095 2.761 2.307 1.203 1.840 0.673 0.925 2.296 2.589 1.687 3.979 2.299 3.521 1.719 1.789 1.684 2.212 3.681 1.143 2.770 4.418 2.245 1.467 1.020 3.359 2.336 1.231 1.658 1.080 77 chr1 151649520 151655924 + 0 NA intron (NM_030918, intron 7 of 11) AluSx1|SINE|Alu 36070 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding 1.718 0.717 0.078 1.212 2.412 0.396 1.951 1.731 30.357 26.071 1.365 2.013 0.809 2.228 0.604 3.580 0.241 2.078 0.093 0.044 2.168 1.587 0.207 0.092 1.337 1.083 0.485 1.604 0.466 0.140 0.278 1.749 5.729 1.831 0.580 1.936 1.884 0.499 2.167 0.333 0.117 0.088 1020 chr4 149361793 149367527 + 0 NA promoter-TSS (NM_001166104) promoter-TSS (NM_001166104) -988 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 1.815 0.894 0.055 0.200 1.320 6.651 2.111 2.146 1.312 3.938 0.865 0.330 1.664 0.203 0.640 0.438 0.088 0.024 0.913 0.390 0.101 0.018 0.579 0.589 0.409 0.040 0.384 0.767 2.194 1.673 0.268 1.092 0.081 0.363 0.461 0.396 0.014 0.917 0.099 0.026 1028 chr5 300628 322952 + 0 NA intron (NM_001267556, intron 5 of 5) intron (NM_001267556, intron 5 of 5) 7499 NM_001242412 57491 Hs.50823 NM_020731 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 0.278 0.755 0.155 0.770 2.207 0.202 0.173 0.043 1.111 0.381 0.272 0.216 0.095 0.045 0.216 1.266 0.154 0.418 1.354 0.175 0.424 0.232 1.057 0.493 2.826 0.522 0.354 0.122 0.285 0.707 0.900 0.117 0.399 3.691 0.120 0.149 0.137 0.305 0.497 0.109 0.344 0.236 786 chr2 95939148 95945452 + 0 NA intron (NM_001165977, intron 4 of 23) intron (NM_001165977, intron 4 of 23) 2104 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 0.464 0.062 0.081 3.127 7.793 0.057 1.616 1.343 8.023 2.591 2.384 5.956 0.056 3.113 11.212 6.399 1.240 0.102 0.016 0.065 0.997 0.659 0.058 0.086 0.626 0.220 0.195 1.141 1.029 0.116 0.158 0.263 5.951 3.619 0.043 2.334 2.073 0.229 2.660 0.896 0.082 0.057 274 chr11 128772044 128780200 + 0 NA promoter-TSS (NM_145013) promoter-TSS (NM_145013) 4 NR_045767 219833 Hs.689860 NM_145013 ENSG00000174370 C11orf45 - chromosome 11 open reading frame 45 protein-coding 0.388 0.938 0.053 0.534 0.545 0.008 1.394 1.063 0.895 0.307 0.088 0.861 0.722 1.746 0.250 1.541 0.668 1.204 0.012 0.017 0.930 0.631 0.849 0.417 0.990 0.946 0.527 0.724 9.335 0.749 0.721 0.212 0.596 0.252 0.046 0.150 0.327 1.187 1.148 2.509 0.042 0.009 1175 chr7 4721050 4725422 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 1306 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 5.949 4.746 0.414 0.863 3.808 2.885 8.886 1.415 10.896 6.676 8.234 1.377 1.503 1.569 4.138 2.818 2.160 3.317 1.415 1.588 2.956 4.141 2.553 3.238 5.500 4.658 2.051 3.100 2.770 6.987 6.351 3.575 3.474 4.382 5.364 2.917 2.439 5.770 2.898 2.784 1.541 0.963 882 chr20 62767691 62801877 + 0 NA Intergenic Intergenic -11043 NM_004535 4661 Hs.279562 NM_004535 ENSG00000196132 MYT1 C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A myelin transcription factor 1 protein-coding 0.103 0.075 0.011 0.145 0.201 0.035 0.101 0.059 8.727 2.023 0.145 0.030 0.014 0.035 0.133 0.052 0.014 0.032 0.468 0.049 0.026 0.034 0.051 0.071 0.214 0.048 0.016 0.058 0.132 0.107 0.036 0.028 0.082 0.119 0.039 0.093 0.096 0.161 0.051 0.033 0.066 0.060 753 chr19 59065151 59072292 + 0 NA intron (NM_003969, intron 1 of 5) intron (NM_003969, intron 1 of 5) 1622 NM_003969 9040 Hs.406068 NM_003969 ENSG00000130725 UBE2M UBC-RS2|UBC12|hUbc12 ubiquitin conjugating enzyme E2 M protein-coding 4.981 6.999 1.996 1.274 3.418 5.572 4.105 1.404 7.248 4.617 4.989 1.410 1.962 1.461 0.504 2.316 2.713 3.940 2.683 2.491 1.493 2.193 3.658 3.785 7.768 4.194 1.869 2.419 2.516 6.572 3.698 4.226 2.868 4.537 3.404 2.564 4.327 5.839 5.087 2.420 2.840 1.655 1305 chr9 100612796 100617516 + 0 NA promoter-TSS (NM_004473) promoter-TSS (NM_004473) -381 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 3.010 2.281 1.576 0.162 1.230 0.060 8.577 0.701 0.891 0.463 0.467 1.232 0.724 0.036 2.149 0.150 0.671 0.079 0.029 0.191 0.047 1.558 0.229 3.492 0.308 0.149 0.278 0.046 3.651 2.631 0.048 2.413 0.196 0.079 0.192 7.267 0.201 137 chr1 222129946 222153776 + 0 NA Intergenic HERVH-int|LTR|ERV1 -127853 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 5.524 0.341 0.310 1.466 3.095 0.048 1.133 3.944 3.474 0.713 2.708 2.592 0.520 8.923 2.651 2.175 0.808 1.557 0.046 0.061 4.259 4.574 0.025 0.831 0.213 0.114 0.059 3.503 0.364 0.396 0.185 0.304 1.715 2.840 0.380 4.123 0.288 0.066 3.312 0.108 0.135 0.075 808 chr2 200319833 200328812 + 0 NA intron (NM_001172517, intron 2 of 11) CpG-15850 -1503 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 2.419 4.720 0.243 1.198 1.152 4.488 2.294 1.009 2.850 2.702 1.437 1.666 2.750 2.186 1.790 4.480 2.140 2.692 2.517 3.321 1.987 2.364 0.476 7.635 6.214 5.464 2.650 0.283 4.423 4.398 6.647 1.770 1.202 1.048 6.824 1.526 0.796 7.027 2.689 3.274 3.455 1.978 925 chr22 43251878 43265316 + 0 NA Intergenic AluJr|SINE|Alu -5189 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 1.870 1.699 0.647 0.533 1.404 0.719 2.766 1.637 2.628 1.067 1.552 0.848 0.408 0.745 1.382 2.002 0.597 0.536 0.232 0.197 0.385 0.408 0.295 0.291 0.825 0.549 0.343 0.561 0.588 0.788 0.894 0.632 0.888 1.774 0.752 0.220 0.728 1.064 0.948 1.153 0.180 0.131 122 chr1 170658505 170682162 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 37020 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 0.363 0.213 0.013 0.272 0.413 0.035 0.313 0.022 0.290 0.122 0.133 0.852 0.367 0.684 0.115 0.544 0.076 2.894 0.009 0.198 0.802 0.306 0.006 0.085 0.183 0.071 0.056 0.048 0.608 0.038 0.248 0.030 0.056 0.160 0.646 0.052 0.024 0.089 0.396 0.234 0.039 0.015 70 chr1 151135204 151140432 + 0 NA promoter-TSS (NM_001204856) promoter-TSS (NM_001204856) 552 NM_212551 388695 Hs.591482 NM_212551 ENSG00000163155 LYSMD1 SB145 LysM domain containing 1 protein-coding 1.771 2.008 0.317 1.160 1.663 1.311 1.355 1.067 18.440 13.049 1.561 1.424 1.302 1.712 1.974 2.687 0.733 2.022 1.478 1.006 2.514 1.819 0.850 2.814 1.734 1.685 1.136 0.587 1.051 1.923 1.928 3.745 4.477 1.955 1.335 1.450 1.915 3.015 2.232 0.537 0.831 0.497 82 chr1 152160760 152165202 + 0 NA Intergenic L2a|LINE|L2 -31277 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 0.347 0.284 0.251 0.215 0.693 1.159 0.106 0.167 13.315 12.926 1.327 0.033 0.931 0.296 0.131 0.407 0.108 0.893 0.066 0.154 0.081 0.047 0.264 1.533 0.041 0.052 0.086 0.701 1.045 0.110 2.490 0.835 0.142 0.729 0.220 0.505 4.141 0.903 0.172 0.052 0.056 327 chr12 57022271 57031336 + 0 NA intron (NM_013449, intron 1 of 28) intron (NM_013449, intron 1 of 28) -2688 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 3.955 2.583 2.652 0.850 2.962 2.950 2.775 1.487 7.463 5.753 4.272 1.574 1.660 2.162 3.587 2.312 2.187 1.921 2.253 2.442 2.015 2.148 2.050 4.290 3.951 3.717 1.631 1.483 5.608 4.983 6.641 2.898 3.038 2.960 3.713 2.235 2.639 5.218 2.401 2.617 2.357 1.101 641 chr17 73099038 73139666 + 0 NA intron (NM_024585, intron 2 of 2) AluSx3|SINE|Alu 8538 NM_001252377 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 1.196 1.877 0.146 0.609 1.333 0.946 1.134 0.956 4.829 2.529 0.982 1.388 0.925 1.167 1.058 2.547 0.397 1.101 0.732 0.280 1.810 1.709 0.560 3.168 1.822 1.101 0.520 0.574 1.465 4.226 1.246 0.658 1.298 1.844 1.418 1.016 0.922 1.263 0.956 1.003 0.405 0.232 588 chr17 37769636 37776725 + 0 NA Intergenic MIRb|SINE|MIR -9005 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 NDRF|bHLHa1 neuronal differentiation 2 protein-coding 19.462 1.326 0.447 0.347 1.193 0.700 1.036 0.402 1.591 0.633 1.190 0.310 0.400 0.523 0.613 0.764 0.432 0.428 0.565 0.314 0.633 0.328 0.833 0.847 0.856 0.860 0.405 0.220 1.546 2.219 0.876 1.678 1.056 1.607 0.877 0.530 0.645 3.095 0.665 0.569 0.309 0.187 218 chr11 62338375 62343162 + 0 NA intron (NM_001404, intron 1 of 9) intron (NM_001404, intron 1 of 9) 692 NM_001404 1937 Hs.144835 NM_001404 ENSG00000254772 EEF1G EF1G|GIG35 eukaryotic translation elongation factor 1 gamma protein-coding 2.727 3.612 1.402 1.263 2.980 2.792 2.141 1.660 6.606 3.251 2.921 3.026 1.473 2.204 5.485 5.301 1.784 3.530 2.555 1.772 2.357 2.557 2.159 3.873 5.716 7.094 3.439 1.973 4.363 2.782 3.264 2.489 1.854 2.388 4.319 1.454 2.271 3.013 4.150 2.359 2.033 1.097 593 chr17 38253317 38282003 + 0 NA Intergenic Intergenic -10682 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 13.224 4.410 4.893 0.977 2.674 3.734 2.273 1.361 4.619 2.344 2.709 1.482 1.779 2.083 1.768 2.292 1.089 1.508 1.056 1.837 2.068 1.984 1.777 3.588 3.000 1.614 0.715 1.216 3.767 3.892 1.773 3.210 3.036 3.321 2.223 1.461 1.653 3.723 1.617 2.433 1.171 0.860 1248 chr8 68254365 68257063 + 0 NA promoter-TSS (NR_136224) promoter-TSS (NR_136224) 198 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 4.909 4.531 2.122 1.253 4.953 3.258 5.488 1.510 10.617 8.282 8.546 2.060 1.445 2.229 2.854 4.117 2.743 2.848 2.947 2.456 3.355 3.975 3.439 1.475 4.918 7.037 3.655 11.212 5.168 6.091 14.290 3.470 2.529 8.816 4.289 2.132 2.264 4.970 3.359 2.764 1.444 0.848 325 chr12 54671024 54678595 + 0 NA promoter-TSS (NM_012117) promoter-TSS (NM_012117) 276 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 5.773 4.113 3.002 1.278 3.414 2.969 4.460 2.419 6.896 4.654 3.018 2.120 2.435 3.465 4.869 4.051 1.749 9.652 1.752 2.323 3.841 3.406 1.694 5.798 6.385 5.092 2.216 2.484 7.886 3.082 3.584 3.252 3.911 2.818 5.630 3.194 3.219 3.721 3.965 2.461 4.170 3.558 71 chr1 151159104 151181097 + 0 NA promoter-TSS (NM_001135636) promoter-TSS (NM_001135636) -920 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 3.393 2.597 2.553 1.034 3.081 3.795 2.157 1.765 17.548 14.849 1.451 1.649 1.346 1.929 2.629 3.275 1.464 2.153 0.760 0.812 2.908 3.168 1.361 3.462 5.492 4.048 1.490 1.157 2.095 2.120 2.401 5.296 6.604 5.501 2.758 1.369 3.675 3.786 3.501 1.575 2.318 1.646 1210 chr7 100485507 100495481 + 0 NA intron (NM_001302622, intron 2 of 4) (CAGA)n|Simple_repeat|Simple_repeat 3047 NM_015831 43 Hs.154495 NM_000665 ENSG00000087085 ACHE ACEE|ARACHE|N-ACHE|YT acetylcholinesterase (Cartwright blood group) protein-coding 1.295 1.524 1.060 0.572 1.665 1.901 5.045 0.740 3.999 2.737 4.924 0.836 1.050 0.940 1.497 2.112 0.968 1.147 0.491 0.432 0.546 0.672 1.133 2.212 2.750 0.605 0.530 2.093 1.398 2.035 4.833 1.374 1.405 1.541 1.794 1.841 2.118 6.008 2.419 0.685 1.064 0.745 964 chr3 141102524 141147094 + 0 NA intron (NM_001080412, intron 7 of 7) intron (NM_001080412, intron 7 of 7) -81080 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 0.505 1.663 0.113 0.098 0.339 2.382 0.419 0.078 2.501 1.135 0.994 0.112 0.206 0.387 0.144 0.764 0.083 0.442 0.207 0.112 0.570 0.378 0.201 5.655 0.653 0.356 0.159 0.463 0.290 3.103 0.919 1.083 4.198 0.205 0.995 1.240 1.613 0.545 0.304 0.415 0.114 0.096 254 chr11 74458623 74467912 + 0 NA intron (NM_001098638, intron 1 of 5) AluSc|SINE|Alu 3354 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 3.671 1.760 1.251 0.696 2.729 1.217 2.540 1.986 nan 2.186 2.718 0.912 0.875 3.037 2.479 2.289 0.772 0.950 0.344 0.463 1.669 1.731 1.005 0.560 3.260 2.383 1.417 1.944 2.667 1.516 1.690 1.739 1.966 1.948 4.913 0.824 1.076 2.728 1.342 1.225 0.434 0.263 732 chr19 46007196 46020306 + 0 NA intron (NM_003370, intron 1 of 12) AluSq2|SINE|Alu 3063 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator-stimulated phosphoprotein protein-coding 4.609 3.648 0.564 0.968 2.805 4.710 1.302 0.707 nan 2.145 1.747 0.932 1.202 1.367 3.425 2.754 2.220 2.515 2.204 1.599 0.790 0.949 1.085 1.692 5.614 3.346 1.260 0.865 1.463 6.731 9.579 2.431 1.649 3.942 1.207 1.512 2.331 4.457 0.475 1.448 1.674 1.129 967 chr3 151018499 151028262 + 0 NA intron (NM_023915, intron 1 of 2) MIR|SINE|MIR 11256 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 4.215 0.454 1.570 1.359 2.378 0.045 5.097 3.899 1.388 0.789 2.104 1.763 0.762 2.379 1.659 5.790 1.372 1.960 0.052 0.014 2.172 1.792 0.053 0.110 3.197 0.221 0.079 1.998 1.673 0.078 0.337 0.016 0.692 2.624 0.048 0.676 1.038 0.642 4.138 0.525 0.094 0.037 637 chr17 66504783 66512556 + 0 NA 5' UTR (NM_001276289, exon 1 of 12) 5' UTR (NM_001276289, exon 1 of 12) 149 NM_002734 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 2.688 4.044 0.933 0.999 2.331 3.579 1.705 0.770 9.255 8.044 3.410 1.335 1.958 1.575 1.663 2.069 1.132 1.328 2.893 1.462 1.718 2.091 1.908 5.386 5.088 2.273 0.794 0.703 2.996 3.676 3.787 4.420 2.022 4.911 0.906 1.449 1.611 4.696 1.667 1.681 1.548 0.720 1040 chr5 33438499 33443783 + 0 NA non-coding (NR_047676, exon 1 of 20) non-coding (NR_047676, exon 1 of 20) 259 NM_001258438 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 3.098 3.442 1.080 3.457 9.765 3.880 4.998 2.520 12.064 10.283 6.909 2.859 2.143 2.577 5.434 5.398 2.515 4.097 2.092 4.272 2.565 2.383 1.424 5.474 4.042 8.045 3.707 3.094 2.321 3.038 3.773 3.232 2.103 8.314 4.933 2.727 2.426 4.257 4.677 2.322 3.509 2.539 59 chr1 94764113 94801481 + 0 NA Intergenic L1MB3|LINE|L1 -69481 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 3.060 0.360 0.565 1.524 2.236 2.113 2.246 1.922 1.477 0.402 1.113 1.945 0.979 1.387 3.885 2.741 0.743 1.606 3.799 0.011 2.454 1.856 0.044 0.944 2.672 0.819 0.390 1.355 1.140 0.730 0.355 0.448 1.264 1.957 6.910 0.216 0.521 0.864 1.526 0.844 3.368 3.415 912 chr22 30571355 30660660 + 0 NA Intergenic T-rich|Low_complexity|Low_complexity 26833 NM_002309 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 7.612 1.378 0.279 1.334 2.544 3.818 1.780 1.580 nan 4.509 0.896 1.902 1.237 1.512 2.925 2.125 0.600 1.682 1.948 0.041 0.718 0.526 0.386 5.078 5.590 1.539 0.632 1.060 1.132 4.107 1.964 1.578 1.460 3.129 2.663 0.791 1.207 7.321 2.492 1.505 3.688 3.246 110 chr1 156864000 156871190 + 0 NA intron (NM_001080471, intron 1 of 22) intron (NM_001080471, intron 1 of 22) 4072 NM_001080471 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 0.329 1.257 0.633 0.573 1.333 0.492 1.461 0.231 0.056 0.078 0.526 2.087 0.850 1.260 2.996 0.332 1.987 0.129 0.019 2.451 1.925 0.705 0.619 5.998 13.183 5.344 0.453 4.828 0.770 2.204 0.032 0.385 0.271 1.416 0.205 0.217 1.131 1.754 0.158 10.629 8.959 354 chr12 107447575 107453578 + 0 NA intron (NM_004075, intron 1 of 12) L1MEg|LINE|L1 37059 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 0.121 0.039 8.425 0.096 0.210 0.011 0.057 0.017 1.339 0.505 0.652 0.048 0.019 0.036 0.149 0.095 0.718 0.194 0.050 0.023 0.184 0.049 0.218 1.032 0.108 0.010 0.064 0.064 0.116 0.141 0.118 0.066 0.769 0.428 0.046 0.101 2.428 0.019 0.172 0.025 0.019 0.009 559 chr17 7587500 7593169 + 0 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) -424 NM_001143991 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 3.065 4.062 3.255 1.982 4.835 4.143 3.587 1.356 7.434 5.430 5.959 3.643 2.111 2.033 3.953 3.186 1.631 2.581 2.956 2.941 1.651 1.880 1.245 5.028 9.497 3.581 1.764 5.005 4.162 6.837 5.106 2.046 2.893 6.780 8.806 2.465 2.911 7.006 5.617 2.861 4.673 3.815 567 chr17 16115782 16122305 + 0 NA promoter-TSS (NM_006311) promoter-TSS (NM_006311) -169 NM_006311 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 2.069 3.531 1.370 1.146 3.424 3.610 2.652 0.663 5.754 4.214 3.862 1.947 1.100 2.157 2.834 1.905 1.405 2.231 1.286 1.489 1.125 1.131 1.380 3.805 6.165 4.298 2.239 2.283 3.149 5.291 5.393 1.603 2.523 3.908 7.532 2.180 1.908 6.528 5.402 1.818 2.843 1.494 934 chr3 11327942 11334402 + 0 NA intron (NM_001136031, intron 1 of 17) intron (NM_001136031, intron 1 of 17) 17162 NM_001144912 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 0.613 6.252 0.077 2.667 4.976 4.472 4.045 2.348 1.358 0.349 0.667 2.788 2.575 5.080 5.775 4.317 1.404 5.778 0.109 3.562 3.323 0.353 4.531 9.562 8.822 3.217 1.031 8.703 1.280 2.981 0.206 3.297 1.302 4.808 0.835 0.179 6.519 4.333 3.996 0.045 0.055 1255 chr8 80695003 80715187 + 0 NA intron (NR_125410, intron 3 of 3) L1MA4|LINE|L1 24718 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 0.193 0.581 0.233 1.344 2.229 0.162 1.480 1.259 5.641 2.304 0.631 2.434 0.906 0.756 1.294 2.908 0.038 0.983 0.267 0.028 1.389 0.885 0.222 0.580 0.552 0.454 0.342 0.780 3.209 0.956 1.968 1.107 4.674 2.223 2.343 1.236 2.842 0.179 0.766 0.225 0.060 0.063 372 chr13 27551314 27559846 + 0 NA Intergenic Intergenic -144090 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 0.092 0.737 5.512 0.401 0.260 0.038 0.281 0.371 0.218 0.099 0.198 0.069 2.235 0.860 0.246 0.869 0.090 1.082 0.535 0.991 0.856 0.856 5.148 2.441 0.412 0.155 0.278 1.803 3.055 0.206 1.245 0.733 0.142 4.472 0.199 2.254 2.282 1.499 0.426 0.263 0.064 805 chr2 178074413 178080502 + 0 NA promoter-TSS (NR_049831) promoter-TSS (NR_049831) 3 NR_039646 100616394 NR_039646 ENSG00000170144 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 4.503 5.132 2.715 1.620 4.543 4.767 4.936 1.801 8.162 6.462 5.306 2.067 1.975 2.595 7.574 4.747 2.604 2.870 2.395 3.319 3.950 4.979 1.938 6.773 6.622 5.348 2.285 2.472 4.247 3.513 3.874 2.514 3.637 5.794 5.967 2.357 1.907 4.788 3.363 3.218 3.111 1.990 628 chr17 49193264 49206122 + 0 NA Intergenic Intergenic -1467 NM_001130528 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 2.575 2.183 3.587 1.151 2.693 1.495 2.032 1.287 nan 2.516 2.187 0.792 0.983 1.589 1.878 3.272 0.663 1.408 0.605 0.355 2.168 1.830 0.876 2.315 3.175 1.195 0.607 1.402 3.400 3.111 3.098 3.029 1.677 5.028 2.099 0.621 1.434 2.447 1.587 0.670 1.130 1.024 44 chr1 56177363 56195319 + 0 NA Intergenic Intergenic 495027 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.056 1.461 0.231 1.182 2.112 0.281 1.839 1.628 nan 0.344 2.725 1.895 0.927 4.804 1.062 4.831 0.166 0.538 0.028 0.031 3.412 2.897 0.037 0.035 0.217 0.236 0.148 2.651 3.350 0.138 0.062 0.259 1.066 1.986 1.055 0.448 0.811 0.055 1.159 2.267 0.032 0.014 420 chr14 62211175 62232867 + 0 NA Intergenic Intergenic -4206 NR_144368 105370526 Hs.661638 NR_144368 LOC105370526 - uncharacterized LOC105370526 ncRNA 4.881 1.080 2.434 0.254 1.106 3.623 1.031 0.804 1.274 0.752 0.730 1.015 0.376 1.588 2.733 1.006 0.322 0.757 0.176 0.204 1.619 1.066 0.196 0.554 2.097 1.432 0.713 0.696 0.922 0.777 1.338 0.546 1.019 0.872 2.810 0.435 0.302 1.113 1.293 1.970 1.637 1.124 391 chr13 111804986 111807397 + 0 NA promoter-TSS (NR_120398) promoter-TSS (NR_120398) 130 NM_003899 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 1.984 4.889 1.003 2.263 8.242 1.164 2.259 1.254 7.109 6.156 2.070 1.157 1.566 1.714 4.805 2.574 0.750 1.223 1.608 0.917 2.573 3.252 2.234 2.671 10.191 4.897 2.109 1.013 2.443 3.665 3.381 3.655 3.021 14.943 2.900 2.184 3.539 5.167 2.570 2.196 2.445 1.965 1337 chrX 48896049 48901073 + 0 NA intron (NM_006521, intron 1 of 9) AluSc|SINE|Alu 2482 NM_006521 7030 Hs.730740 NM_006521 ENSG00000068323 TFE3 RCCP2|RCCX1|TFEA|bHLHe33 transcription factor binding to IGHM enhancer 3 protein-coding 1.261 4.851 0.971 0.793 2.590 2.393 2.981 1.702 2.289 1.616 3.312 1.929 1.310 2.442 2.154 2.487 0.915 3.315 0.355 1.119 3.272 4.999 2.100 9.003 15.523 9.463 3.747 2.055 4.495 5.181 3.736 1.249 3.485 3.001 1.768 1.791 0.988 2.707 3.396 2.310 3.496 2.469 586 chr17 37351556 37359256 + 0 NA Intergenic Intergenic -1130 NM_000981 6143 Hs.381061 NM_000981 ENSG00000108298 RPL19 L19 ribosomal protein L19 protein-coding 11.429 4.546 1.014 1.305 3.011 4.510 3.169 1.539 3.174 2.157 2.539 1.480 2.369 2.932 3.086 3.720 1.390 1.639 1.119 2.673 2.536 2.570 2.223 5.285 4.747 3.044 1.406 1.977 4.133 4.990 2.724 1.884 2.477 2.936 3.051 2.390 1.735 5.849 2.825 2.180 2.026 1.300 269 chr11 127905375 127925523 + 0 NA Intergenic Intergenic 476756 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 0.841 0.647 0.037 0.038 0.189 0.040 0.250 0.016 1.349 0.384 0.059 0.225 0.447 0.938 0.071 0.202 0.417 1.486 0.010 0.014 0.074 0.050 0.118 0.062 1.408 0.308 0.234 0.039 5.235 0.032 0.213 0.008 0.456 0.050 0.184 0.431 0.199 0.091 0.218 2.178 0.026 0.010 474 chr15 93442563 93474255 + 0 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 10780 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA 2.369 1.917 1.330 0.998 2.268 2.130 2.712 1.166 3.261 2.649 1.728 1.173 0.593 2.172 2.909 1.714 0.945 1.775 0.797 1.216 1.771 1.301 0.481 2.017 1.531 0.836 0.433 0.811 1.602 2.158 1.077 1.235 3.074 1.653 3.254 1.784 2.452 0.763 1.384 1.789 0.661 0.599 1323 chr9 137214389 137224486 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) 1128 NM_002957 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.457 1.769 0.209 1.259 4.098 0.357 5.750 1.109 7.811 2.823 1.530 1.910 0.609 0.667 3.384 2.474 1.284 0.856 0.081 0.646 2.091 2.332 1.149 2.798 1.199 1.534 0.995 2.099 0.414 3.221 1.223 0.533 2.292 3.610 1.891 1.709 3.086 3.007 2.734 0.439 0.445 0.191 85 chr1 153929412 153942068 + 0 NA promoter-TSS (NR_106795) promoter-TSS (NR_106795) 104 NM_001271957 27173 Hs.7854 NM_014437 ENSG00000143570 SLC39A1 ZIP1|ZIRTL solute carrier family 39 member 1 protein-coding 3.097 3.930 3.373 2.194 5.343 4.218 3.415 2.500 31.030 24.942 4.313 2.669 3.164 4.197 4.029 3.228 1.787 2.113 2.651 1.766 2.980 3.218 2.204 4.495 7.266 4.828 2.099 2.488 1.960 3.369 3.457 11.241 11.042 5.887 4.205 2.729 7.136 11.478 4.300 2.293 2.011 1.126 784 chr2 85810668 85823993 + 0 NA intron (NM_006634, intron 1 of 2) intron (NM_006634, intron 1 of 2) -5507 NM_016494 51255 Hs.356187 NM_016494 ENSG00000168894 RNF181 HSPC238 ring finger protein 181 protein-coding 0.779 2.352 0.185 1.087 2.344 0.753 1.205 1.359 10.335 3.677 5.060 0.971 1.829 2.145 1.091 3.513 0.465 3.800 0.383 0.281 1.427 1.215 0.569 0.532 1.596 1.918 0.925 2.141 2.132 1.336 1.144 1.245 1.323 3.209 3.710 0.674 0.853 1.471 1.668 0.942 0.514 0.317 8 chr1 6548439 6558335 + 0 NA intron (NM_198681, intron 2 of 21) L2a|LINE|L2 -1626 NM_020631 57449 Hs.284232 NM_020631 ENSG00000171680 PLEKHG5 CMTRIC|DSMA4|GEF720|Syx|Tech pleckstrin homology and RhoGEF domain containing G5 protein-coding 0.481 2.487 0.095 1.118 2.605 1.433 0.416 1.002 nan 2.052 0.209 1.712 1.382 1.038 0.800 1.227 0.751 0.930 0.899 0.266 0.995 1.301 1.380 1.088 5.952 5.313 2.085 1.003 6.273 1.455 5.311 0.564 0.646 1.521 5.717 1.053 0.626 2.918 1.108 1.193 1.240 1.383 1141 chr6 43137297 43143460 + 0 NA intron (NM_001292001, intron 1 of 6) intron (NM_001292001, intron 1 of 6) 250 NM_001292001 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 3.582 3.166 0.667 0.739 3.857 2.228 2.086 0.839 2.928 2.405 3.463 0.804 0.752 1.557 2.026 3.015 0.526 1.869 1.311 1.878 2.380 2.402 1.446 1.151 3.720 3.297 1.551 1.283 5.083 1.942 4.755 1.812 1.450 10.848 3.330 0.636 1.301 6.075 2.429 1.315 1.598 1.018 273 chr11 128316682 128398284 + 0 NA intron (NM_001330451, intron 3 of 6) AluSc8|SINE|Alu 34722 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1.048 1.513 0.038 0.590 1.256 1.079 1.954 1.058 1.415 0.662 0.325 1.075 0.903 2.035 0.954 2.069 1.020 1.935 0.112 0.010 1.888 1.241 0.201 0.996 4.993 1.440 0.633 1.486 2.799 0.678 1.292 0.134 0.755 0.929 2.656 0.423 0.376 0.411 1.345 1.407 0.486 0.388 161 chr10 34709298 34723510 + 0 NA intron (NM_001184791, intron 4 of 20) MER11B|LTR|ERVK 387849 NM_001184787 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.350 0.237 0.039 0.334 0.926 6.342 0.142 0.052 1.193 0.468 0.129 0.235 0.033 0.098 0.133 0.281 0.630 0.290 0.036 0.029 0.229 0.121 0.088 0.075 0.044 0.013 0.038 1.011 0.116 4.316 0.060 2.108 2.252 0.699 1.102 0.412 0.415 0.083 0.079 0.027 0.044 0.017 148 chr1 244995729 245001240 + 0 NA promoter-TSS (NM_001312874) promoter-TSS (NM_001312874) -124 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A COX20, cytochrome c oxidase assembly factor protein-coding 5.292 6.126 3.574 1.446 4.408 7.272 7.359 3.288 9.460 6.642 6.685 2.043 2.087 4.989 5.253 5.202 2.438 4.494 2.267 6.316 6.116 8.160 3.447 13.473 10.423 8.899 3.185 3.803 9.989 6.973 5.331 7.361 8.328 6.840 4.277 3.996 5.770 5.614 6.944 3.670 8.929 8.414 1332 chr9 140499096 140514813 + 0 NA intron (NM_152285, intron 1 of 7) intron (NM_152285, intron 1 of 7) 6027 NR_122036 85026 Hs.522520 NM_032937 ENSG00000203993 ARRDC1-AS1 C9orf37 ARRDC1 antisense RNA 1 ncRNA 2.843 2.480 2.052 2.364 6.500 0.600 6.622 1.550 8.879 5.251 3.159 2.050 0.718 2.218 3.833 3.267 2.818 0.577 0.554 0.361 2.641 3.222 1.443 1.385 5.005 3.434 1.707 2.960 0.969 2.530 3.279 1.187 3.266 7.877 1.931 1.592 7.877 1.971 1.973 1.320 1.221 0.815 550 chr17 2285912 2312059 + 0 NA intron (NM_020310, intron 1 of 5) intron (NM_020310, intron 1 of 5) 5273 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 1.497 2.210 0.754 1.401 3.088 2.386 3.109 1.003 5.055 2.850 2.789 0.699 1.028 2.103 1.992 2.236 0.840 1.687 1.220 1.806 1.402 2.018 1.384 3.428 3.130 1.182 0.490 2.182 2.180 4.943 3.797 1.304 1.905 6.571 8.338 1.848 0.974 3.595 2.745 1.567 1.143 0.743 812 chr2 208191319 208204384 + 0 NA Intergenic Intergenic -63703 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 0.010 1.286 0.014 2.578 4.303 0.366 3.912 1.949 8.985 6.127 5.475 3.102 1.599 3.353 0.565 3.977 0.307 1.299 0.115 0.011 3.298 2.796 0.051 0.247 3.272 2.333 1.146 2.968 4.372 0.474 1.700 0.546 0.565 1.628 2.938 0.470 0.214 1.497 1.858 2.146 0.480 0.292 168 chr10 60191099 60200690 + 0 NA Intergenic Intergenic 50991 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 0.948 1.314 0.042 0.958 1.645 9.054 0.885 0.680 1.374 0.771 1.559 0.976 0.282 0.950 0.733 1.386 0.409 1.577 0.031 0.014 0.216 0.091 0.077 0.067 2.074 0.397 0.220 0.474 1.304 0.255 0.112 0.302 0.961 1.179 0.116 0.946 0.052 0.303 0.908 1.353 1.558 1.516 1216 chr7 102143972 102158210 + 0 NA intron (NM_001277335, intron 2 of 19) AluSx1|SINE|Alu 7133 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 0.356 2.527 0.099 1.151 1.635 0.158 0.661 1.118 5.734 2.003 0.931 0.576 2.043 0.322 0.499 2.868 0.202 1.765 0.361 0.482 0.957 0.713 1.247 1.492 9.248 0.562 0.438 0.636 0.277 1.930 3.037 0.530 1.121 2.069 0.768 2.619 0.773 2.561 0.816 0.862 0.133 0.052 527 chr16 67589168 67598866 + 0 NA Intergenic AluSp|SINE|Alu -2293 NM_006565 10664 Hs.368367 NM_006565 ENSG00000102974 CTCF MRD21 CCCTC-binding factor protein-coding 2.904 3.839 0.723 1.201 3.829 4.939 2.579 0.555 3.093 1.370 2.777 1.360 1.245 0.984 2.962 1.883 1.784 1.773 1.994 2.108 1.880 2.539 2.476 2.975 5.604 4.184 2.025 0.916 1.720 3.555 2.808 2.062 3.895 4.422 2.499 1.225 1.678 3.119 1.877 1.656 1.462 1.113 1232 chr8 29256273 29263018 + 0 NA Intergenic Intergenic -51378 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 0.129 0.182 0.168 0.079 0.084 0.030 0.295 0.585 0.072 0.128 0.022 0.018 0.058 0.156 0.014 0.850 0.150 0.017 0.838 0.463 0.045 2.327 0.137 0.117 0.067 0.022 0.133 0.736 0.010 4.129 0.903 0.042 0.027 0.275 0.111 0.180 0.157 0.177 0.009 0.007 505 chr16 24985623 25011822 + 0 NA intron (NM_018054, intron 1 of 18) intron (NM_018054, intron 1 of 18) 27977 NM_018054 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 2.150 1.521 0.620 0.304 0.682 2.657 0.391 0.338 0.524 0.204 0.245 0.397 0.302 1.014 0.415 1.621 0.601 1.577 0.138 0.011 1.027 0.529 0.742 1.667 1.434 0.924 0.480 0.495 1.023 0.781 0.284 0.267 0.558 0.575 3.664 0.178 0.183 0.543 1.687 0.651 0.232 0.148 324 chr12 54650514 54657874 + 0 NA promoter-TSS (NM_001127322) promoter-TSS (NM_001127322) -824 NM_001127321 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 0.991 4.066 0.034 0.463 1.364 4.050 1.631 1.048 2.003 1.028 0.115 0.654 0.080 2.061 0.254 0.841 0.078 10.637 1.725 0.019 1.214 0.597 2.758 2.533 5.439 3.952 1.821 0.657 0.448 2.002 3.553 2.946 0.649 0.418 0.846 0.750 0.157 1.060 2.399 2.286 2.183 0.981 473 chr15 93423172 93434653 + 0 NA intron (NR_037602, intron 2 of 4) intron (NR_037602, intron 2 of 4) 2386 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 2.462 3.890 1.102 0.610 2.955 2.815 5.315 2.387 3.873 3.574 4.110 1.198 1.311 3.437 3.924 2.183 1.660 1.525 1.352 3.064 2.496 3.116 1.666 3.262 1.867 1.425 0.646 1.287 3.909 3.483 1.874 2.706 3.777 2.573 3.263 2.263 4.207 2.221 2.715 3.281 0.858 0.718 481 chr16 1792683 1798447 + 0 NA intron (NM_001040439, intron 5 of 30) intron (NM_001040439, intron 5 of 30) 10579 NR_036138 100423012 NR_036138 ENSG00000265820 MIR3177 mir-3177 microRNA 3177 ncRNA 0.137 3.922 1.808 1.377 3.483 1.187 0.047 0.523 0.184 0.322 2.238 2.627 0.019 3.723 0.312 2.412 0.113 0.052 0.144 2.575 3.122 0.366 0.112 10.043 3.365 1.025 0.080 0.208 0.570 0.062 0.028 0.081 8.500 0.127 0.044 1.132 0.284 0.737 3.397 1.738 1.394 671 chr18 45452839 45461447 + 0 NA promoter-TSS (NM_005901) promoter-TSS (NM_005901) -173 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 2.740 2.938 1.125 0.330 0.873 5.801 1.149 0.504 2.191 1.658 1.565 0.343 0.438 0.911 3.117 0.890 0.777 1.144 1.830 2.626 0.682 0.897 1.943 3.979 4.036 2.889 1.365 0.813 1.691 3.126 1.908 1.808 5.733 1.396 0.688 2.494 1.492 2.727 1.350 0.957 0.870 0.537 1298 chr9 35920134 35925783 + 0 NA Intergenic AluSc|SINE|Alu 13478 NR_024283 158376 Hs.302677 NR_024283 ENSG00000235387 LINC00961 SPAR long intergenic non-protein coding RNA 961 ncRNA 0.077 2.001 0.033 0.735 0.843 0.960 0.467 0.114 0.432 0.101 0.492 0.129 0.397 0.909 2.087 2.586 0.458 2.609 0.091 0.123 6.013 5.476 0.195 7.695 0.547 0.128 0.139 0.270 5.937 1.276 0.352 0.173 1.031 0.140 0.131 0.586 0.043 0.548 1.957 0.230 5.165 4.892 608 chr17 41463098 41485801 + 0 NA Intergenic AluSp|SINE|Alu -1904 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 1.864 4.165 0.469 1.427 2.378 0.986 2.013 1.103 nan 2.759 1.426 2.085 2.094 2.426 2.297 2.953 0.783 2.044 0.295 0.354 2.564 2.346 0.997 3.725 2.282 0.959 0.548 0.963 2.060 4.442 1.902 1.593 2.142 2.944 2.209 1.724 1.224 3.085 1.478 1.332 1.365 0.882 698 chr19 13943337 13977566 + 0 NA Intergenic MIR|SINE|MIR -12978 NR_029495 407010 NR_029495 ENSG00000207980 MIR23A MIRN23A|hsa-mir-23a|miRNA23A|mir-23a microRNA 23a ncRNA 5.398 3.332 2.590 1.539 3.482 7.822 3.976 1.754 nan 3.369 2.000 1.836 1.601 2.359 3.974 3.700 2.437 3.002 0.797 2.731 4.151 5.274 3.777 4.808 7.692 5.454 2.092 2.490 10.282 4.962 8.614 2.907 3.293 6.673 3.420 1.617 4.578 8.272 4.938 3.257 2.901 1.936 617 chr17 43537341 43548450 + 0 NA intron (NR_027782, intron 4 of 10) AluSz6|SINE|Alu 9906 NR_036271 100422961 NR_036271 MIR4315-2 - microRNA 4315-2 ncRNA 4.221 0.848 1.126 0.745 1.201 0.114 0.750 0.659 nan 1.892 3.433 1.299 1.194 0.952 4.080 2.180 2.281 0.656 0.435 0.087 1.319 1.016 0.126 0.442 0.530 0.493 0.203 1.109 0.376 1.472 0.707 0.455 2.623 4.234 2.123 1.323 5.017 0.240 0.519 0.513 0.093 0.092 1196 chr7 30632873 30638043 + 0 NA intron (NM_002047, intron 1 of 16) intron (NM_002047, intron 1 of 16) 949 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 7.078 3.405 1.467 1.056 3.446 1.598 8.404 2.079 13.811 11.973 8.030 1.469 1.884 2.928 6.191 2.845 3.049 3.317 2.693 5.626 3.592 3.046 1.597 3.702 3.525 2.670 1.617 2.460 5.318 3.507 4.193 3.356 3.204 3.810 5.889 3.140 1.681 3.781 3.785 2.481 2.785 1.590 694 chr19 11046532 11080387 + 0 NA Intergenic Intergenic -8139 NM_003072 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 0.783 0.597 1.098 0.714 1.534 0.194 1.260 0.530 nan 1.824 1.969 0.514 0.304 0.761 1.706 1.271 0.660 0.446 0.568 0.471 1.169 1.106 1.064 0.494 0.776 0.783 0.456 1.222 0.675 0.883 1.201 0.879 1.258 1.946 0.407 0.330 1.019 1.088 2.057 0.468 0.245 0.161 866 chr20 49317415 49389504 + 0 NA intron (NM_032521, intron 1 of 2) AluSg|SINE|Alu 5378 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 5.151 0.982 2.259 0.675 1.548 2.723 2.294 1.792 1.761 0.873 1.797 0.958 0.684 1.771 2.516 1.701 1.357 0.859 0.249 0.115 1.440 1.189 0.411 0.774 3.153 0.688 0.374 1.806 1.116 2.884 0.480 1.323 1.026 2.054 1.802 0.548 1.585 1.670 1.262 0.532 1.174 1.156 731 chr19 45970014 45974416 + 0 NA intron (NM_006732, intron 1 of 3) CpG 962 NM_006732 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 3.678 0.946 0.255 0.560 1.857 0.345 1.488 0.430 nan 2.718 2.421 0.382 0.409 0.880 2.275 1.039 0.693 2.610 0.588 0.694 0.362 0.397 0.440 0.234 0.973 0.630 0.320 0.229 1.601 1.701 7.983 0.786 1.037 10.606 0.509 0.747 0.849 2.273 0.126 0.415 1.138 0.498 449 chr15 63378887 63407203 + 0 NA Intergenic Charlie1a|DNA|hAT-Charlie -20954 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 0.305 0.928 0.162 0.082 0.161 1.732 0.084 0.643 0.367 0.126 0.687 0.412 0.525 0.246 0.173 0.277 0.051 2.330 0.074 0.059 1.977 1.281 0.232 0.097 0.559 0.141 0.119 0.086 5.771 1.929 0.315 0.017 0.210 0.393 0.078 0.100 0.126 0.086 0.419 0.456 1.070 1.003 1139 chr6 42368285 42377302 + 0 NA intron (NM_033502, intron 2 of 17) intron (NM_033502, intron 2 of 17) 46996 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 0.280 0.242 0.028 1.238 2.886 0.099 1.117 1.777 0.625 0.204 0.111 0.972 0.825 0.822 0.949 7.714 0.212 1.033 0.022 0.015 3.403 3.164 0.040 0.197 0.460 0.482 0.328 0.604 3.288 0.398 1.223 0.071 0.401 2.829 10.853 0.217 0.320 0.109 2.739 1.089 0.051 0.023 854 chr20 43311794 43335673 + 0 NA Intergenic MIRb|SINE|MIR -19752 NM_003881 8839 Hs.592145 NM_003881 ENSG00000064205 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding 0.838 0.430 0.024 0.175 0.334 2.722 0.703 0.301 0.406 0.158 0.138 0.238 0.203 0.320 0.326 0.287 1.035 0.786 0.058 0.040 0.876 0.447 2.482 0.907 4.563 0.184 0.176 0.295 0.235 1.115 0.256 0.321 0.726 0.262 1.764 0.169 1.865 4.908 1.037 0.175 0.219 0.173 1046 chr5 44725972 44732339 + 0 NA Intergenic Intergenic 79740 NR_109862 100506674 Hs.575213 NR_109862 BRCAT54 - breast cancer-associated transcript 54 ncRNA 0.113 0.061 4.452 0.090 0.448 0.020 0.226 0.166 0.893 0.359 0.305 0.023 0.102 0.107 0.268 0.015 0.086 0.048 0.107 0.193 0.023 0.093 0.145 0.009 0.068 0.480 0.206 0.141 0.033 0.088 0.052 0.581 0.087 0.020 0.057 0.164 0.111 0.045 0.019 672 chr18 45522985 45536715 + 0 NA Intergenic Intergenic -72333 NM_001003652 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 0.220 2.169 0.009 0.014 0.062 7.667 0.104 0.065 0.427 0.141 0.221 0.032 0.138 0.120 0.499 0.108 1.003 0.210 0.176 0.066 0.277 0.179 0.299 6.117 5.293 0.854 0.386 0.072 0.690 3.462 0.326 1.457 4.101 0.042 0.088 2.581 1.664 2.590 1.191 0.205 1.523 1.245 1126 chr6 34511009 34540356 + 0 NA Intergenic AluSx1|SINE|Alu -1572 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 0.372 0.315 0.017 0.317 0.296 0.069 0.169 0.451 4.039 0.859 0.905 0.414 0.278 0.558 0.716 3.401 0.020 0.122 0.147 0.024 1.607 1.008 0.060 0.182 0.359 0.383 0.212 0.320 0.181 1.900 0.175 0.700 2.213 0.403 0.884 0.358 1.726 0.255 0.454 0.853 0.030 0.023 1052 chr5 56728559 56739322 + 0 NA Intergenic Intergenic 44696 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 1.860 0.079 0.104 0.334 0.422 0.082 1.006 3.300 0.505 0.113 0.614 0.888 0.593 2.840 1.841 2.121 0.035 4.549 0.027 0.013 1.461 0.660 0.034 0.157 1.146 0.660 0.269 0.229 1.042 0.151 0.307 0.692 0.613 0.126 1.644 0.149 0.085 0.108 1.296 0.869 0.128 0.085 578 chr17 34100388 34123245 + 0 NA intron (NM_024302, intron 1 of 7) intron (NM_024302, intron 1 of 7) 10895 NM_032950 79148 Hs.380710 NM_024302 ENSG00000271447 MMP28 EPILYSIN|MM28|MMP-25|MMP-28|MMP25 matrix metallopeptidase 28 protein-coding 0.084 0.093 0.201 0.108 0.167 0.056 0.386 0.555 1.201 0.374 0.628 0.231 0.486 0.821 0.302 0.908 0.037 0.262 0.044 0.017 2.570 2.147 0.391 0.085 0.213 0.084 0.071 0.434 0.228 1.175 0.103 0.055 0.290 0.148 0.905 0.343 0.163 0.269 1.207 0.163 0.010 0.020 264 chr11 111169075 111207131 + 0 NA Intergenic L1PB1|LINE|L1 -12330 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 0.087 0.091 0.577 0.070 0.214 0.037 0.543 0.174 4.269 0.781 0.926 0.364 0.121 1.532 0.812 0.189 0.040 0.302 0.810 0.022 1.485 1.266 0.043 0.091 0.262 0.124 0.096 0.801 0.183 0.881 0.049 0.225 0.446 0.103 0.075 0.239 1.024 0.148 0.054 0.046 0.033 0.016 219 chr11 62491714 62498548 + 0 NA promoter-TSS (NM_001318814) promoter-TSS (NM_001318814) -274 NM_001079559 221092 Hs.657058 NM_001079559 ENSG00000214753 HNRNPUL2 HNRPUL2|SAF-A2 heterogeneous nuclear ribonucleoprotein U like 2 protein-coding 4.397 5.668 2.333 1.464 4.440 4.069 3.789 1.710 7.623 5.287 4.265 2.992 1.764 1.853 8.178 5.058 2.374 3.191 2.962 2.514 2.932 3.305 2.978 3.725 7.858 6.588 3.575 2.456 6.683 4.991 5.449 2.575 2.873 3.569 3.622 1.696 2.616 4.464 3.898 4.882 3.101 1.855 191 chr11 206194 211363 + 0 NA promoter-TSS (NR_106801) promoter-TSS (NR_106801) -558 NR_106801 102465445 NR_106801 ENSG00000177963 MIR6743 hsa-mir-6743 microRNA 6743 ncRNA 4.620 6.376 1.702 1.645 4.969 4.119 4.698 2.669 8.627 6.861 7.147 1.766 1.709 3.096 4.023 5.938 1.312 2.572 2.247 2.921 2.669 3.739 3.902 3.759 8.609 7.695 3.618 2.537 4.272 5.844 4.143 3.832 2.902 8.407 5.877 2.354 2.590 6.761 2.880 3.844 2.852 1.543 905 chr22 19158114 19167325 + 0 NA TTS (NM_001256534) TTS (NM_001256534) 3299 NM_001287387 6576 Hs.111024 NM_005984 ENSG00000100075 SLC25A1 CTP|D2L2AD|SEA|SLC20A3 solute carrier family 25 member 1 protein-coding 3.305 3.285 0.652 0.925 3.331 2.905 3.204 0.896 nan 4.121 2.895 1.022 0.700 1.339 2.506 0.838 1.285 1.851 0.706 0.874 0.948 0.869 2.347 2.834 2.891 2.226 1.258 0.806 1.443 2.435 4.913 1.997 2.465 3.617 2.097 1.504 1.462 4.881 2.286 1.526 0.694 0.513 682 chr19 1744848 1749425 + 0 NA Intergenic MIR|SINE|MIR -6526 NM_001080488 390874 Hs.654347 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 5.816 0.269 1.530 1.965 0.042 2.528 3.323 6.327 2.800 0.370 2.077 0.880 6.530 3.646 4.394 0.019 1.388 0.045 0.646 0.477 0.111 0.430 14.824 0.323 0.152 0.625 0.241 1.139 0.344 0.449 5.270 4.078 0.119 3.691 0.217 2.460 7.469 3.377 7.269 5.088 1309 chr9 110242339 110253605 + 0 NA 3' UTR (NM_001314052, exon 4 of 4) 3' UTR (NM_001314052, exon 4 of 4) 4029 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.942 0.892 0.465 1.265 3.330 0.486 2.781 0.542 nan 1.432 0.935 1.324 0.708 0.936 2.424 1.460 0.406 1.233 0.348 0.013 1.402 1.198 0.394 3.987 0.574 1.867 1.038 0.661 0.921 2.395 1.204 1.617 2.149 4.136 2.202 1.499 2.962 1.268 0.718 0.140 0.271 0.180 1284 chr8 143314215 143319078 + 0 NA intron (NM_145003, intron 12 of 13) intron (NM_145003, intron 12 of 13) 36929 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 3.296 0.582 0.013 0.740 0.477 1.383 3.239 2.205 9.028 2.068 1.146 1.910 2.795 1.601 2.655 3.147 0.057 1.442 0.710 0.058 1.440 0.772 0.134 0.011 5.608 10.371 4.128 0.296 3.889 0.117 5.089 0.136 0.390 0.752 3.755 0.025 0.688 3.322 1.526 2.475 4.395 3.407 35 chr1 43822869 43841869 + 0 NA intron (NM_001256402, intron 1 of 6) intron (NM_001256402, intron 1 of 6) 1040 NM_001256399 64834 Hs.25597 NM_022821 ENSG00000066322 ELOVL1 CGI-88|Ssc1 ELOVL fatty acid elongase 1 protein-coding 3.204 2.630 0.693 1.093 2.258 2.234 3.427 1.575 3.231 1.323 1.335 1.793 0.992 1.962 2.391 3.773 1.168 2.119 0.930 0.823 1.920 1.759 1.872 1.934 4.852 6.052 2.156 2.218 3.361 1.915 3.730 0.874 1.298 2.051 4.124 0.902 1.751 4.055 1.872 1.777 3.025 2.704 441 chr15 30915210 30921318 + 0 NA promoter-TSS (NM_001039841) promoter-TSS (NM_001039841) -615 NM_001039841 89839 Hs.659621 NM_001039841 ENSG00000187951 ARHGAP11B B'-T|FAM7B1 Rho GTPase activating protein 11B protein-coding 1.969 2.826 1.378 1.360 3.689 5.651 3.193 1.570 8.537 5.557 2.182 2.368 2.419 3.376 3.052 5.616 2.169 4.581 2.021 2.199 3.215 4.263 1.242 6.444 2.626 4.780 2.033 1.868 6.275 4.676 4.184 3.623 3.797 2.883 8.001 2.641 1.583 3.277 4.127 7.207 3.347 2.407 361 chr12 123422160 123437087 + 0 NA intron (NM_001243013, intron 6 of 10) intron (NM_001243013, intron 6 of 10) 21433 NM_019624 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 3.269 0.416 0.074 1.117 1.587 0.143 1.862 2.216 5.863 1.530 0.789 1.886 1.407 1.422 0.586 3.673 0.987 1.409 0.040 0.037 2.140 1.668 0.219 0.569 2.408 0.378 0.241 2.431 7.697 0.997 1.255 0.779 1.060 2.787 2.242 1.063 0.427 0.466 1.432 0.615 0.675 0.633 1300 chr9 37937217 37970792 + 0 NA intron (NM_003028, intron 4 of 5) intron (NM_003028, intron 4 of 5) -49654 NR_024872 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 0.879 1.029 0.261 1.274 2.085 0.941 0.938 0.494 3.621 1.303 0.699 1.269 1.028 1.066 0.603 2.624 0.598 1.018 0.340 0.033 1.074 0.609 0.394 0.156 2.316 0.742 0.381 1.006 0.680 0.974 1.428 0.621 2.009 1.809 0.488 0.594 0.415 2.304 0.802 2.169 1.079 0.715 416 chr14 61112478 61125334 + 0 NA Intergenic Intergenic -2751 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 1.119 0.815 0.377 0.295 0.778 0.737 1.654 1.246 4.728 2.027 2.912 1.206 0.773 4.270 0.962 1.294 0.505 1.379 0.771 1.806 5.240 5.191 0.418 0.770 0.760 1.587 0.842 0.353 3.513 1.608 2.312 1.416 0.781 0.762 0.604 1.192 1.339 2.479 0.572 0.579 0.681 0.544 1083 chr5 142773585 142786016 + 0 NA exon (NM_000176, exon 2 of 9) exon (NM_000176, exon 2 of 9) 3454 NM_001204258 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 5.000 6.804 1.844 0.808 2.235 3.697 2.914 2.725 5.635 3.994 3.649 1.917 3.369 5.251 2.251 3.881 1.959 2.453 0.912 0.211 3.781 5.510 1.466 4.418 5.453 2.475 1.179 2.083 4.860 5.278 3.243 2.652 5.921 2.684 5.734 3.124 3.139 3.383 4.142 4.388 0.834 0.357 670 chr18 19744968 19770935 + 0 NA intron (NM_005257, intron 3 of 6) AluSp|SINE|Alu 8553 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 4.869 0.532 1.568 0.253 0.498 0.068 0.697 0.319 0.383 0.383 0.365 0.237 0.199 0.252 0.905 0.340 0.085 2.306 0.382 0.027 0.266 0.220 0.100 0.133 0.402 0.230 0.201 0.154 0.536 0.574 1.351 0.586 0.376 0.480 0.619 0.230 0.597 0.401 0.317 0.428 0.104 0.069 941 chr3 49376171 49401478 + 0 NA Intergenic AluSg|SINE|Alu 7209 NM_001329503 2876 Hs.76686 NM_000581 ENSG00000233276 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 1.208 1.941 0.447 1.033 2.444 1.567 4.663 2.138 4.006 1.426 1.147 1.115 0.652 1.600 2.897 2.141 1.166 0.757 0.586 0.494 1.519 1.369 0.457 0.978 2.130 1.888 0.950 1.243 1.382 1.319 0.816 0.740 1.837 2.405 1.761 1.119 0.319 0.754 1.756 0.861 0.790 0.481 601 chr17 40510019 40517233 + 0 NA intron (NM_139276, intron 1 of 23) MER5B|DNA|hAT-Charlie 26779 NM_213662 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 0.215 0.307 0.069 0.078 0.441 1.346 0.184 nan 0.134 0.207 0.082 0.063 0.093 0.148 0.206 0.136 0.071 0.140 0.057 0.522 0.220 0.220 0.261 0.242 0.083 0.054 0.183 0.208 0.654 0.106 4.078 0.553 0.433 0.101 0.101 1.833 0.358 0.336 0.052 0.056 0.014 185 chr10 126722306 126735606 + 0 NA intron (NM_001321013, intron 1 of 9) AluSx1|SINE|Alu -7517 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 0.227 1.471 0.548 0.647 1.812 0.183 1.203 1.402 4.386 2.386 0.489 0.616 0.791 1.355 0.471 3.257 0.258 1.506 0.052 0.103 1.038 0.773 0.250 2.014 0.578 0.276 0.175 0.393 0.429 1.512 0.185 0.784 1.341 3.046 0.980 1.577 0.774 0.162 1.442 1.010 0.013 0.019 100 chr1 155176097 155180635 + 0 NA promoter-TSS (NM_002455) promoter-TSS (NM_002455) -124 NM_002455 4580 Hs.490874 NM_002455 ENSG00000173171 MTX1 MTX|MTXN metaxin 1 protein-coding 2.120 4.916 0.794 1.421 3.642 7.280 2.239 0.793 5.609 2.924 3.069 2.744 2.579 2.774 2.886 1.939 1.819 3.241 2.813 4.417 2.795 2.883 3.232 5.853 4.157 2.246 1.385 0.734 1.211 3.587 5.969 10.462 2.872 5.797 4.550 2.112 2.568 14.195 4.602 1.023 1.358 0.782 89 chr1 154579026 154582765 + 0 NA promoter-TSS (NM_015841) promoter-TSS (NM_015841) -171 NM_015840 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 3.331 3.248 2.526 2.180 5.974 6.180 3.333 1.267 7.185 3.824 6.028 2.231 3.219 2.890 2.982 3.628 3.470 3.524 1.901 3.888 3.347 3.939 3.121 6.355 10.741 5.184 2.209 4.281 3.347 4.136 3.990 9.520 7.628 6.847 6.614 3.473 3.554 8.857 5.573 2.231 2.832 1.864 1074 chr5 133886355 133892894 + 0 NA intron (NM_015288, intron 4 of 10) intron (NM_015288, intron 4 of 10) 27826 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 1.705 2.377 0.312 1.018 1.329 3.585 0.214 0.242 0.391 0.161 0.097 0.201 0.395 0.798 0.237 3.333 0.087 2.919 0.120 0.170 0.405 0.252 3.236 1.912 3.903 7.754 2.834 0.261 0.492 2.087 4.315 0.085 0.204 0.336 2.313 0.197 0.581 2.579 0.798 1.621 6.448 4.411 261 chr11 100639833 100651598 + 0 NA intron (NM_152432, intron 2 of 23) intron (NM_152432, intron 2 of 23) -87029 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.769 0.240 4.623 0.424 1.567 0.392 1.435 1.623 0.997 0.484 0.840 1.309 0.150 1.904 2.168 2.415 0.657 0.572 0.042 0.012 1.454 1.366 0.094 0.051 0.243 0.210 0.059 2.634 0.265 0.989 0.019 0.089 2.334 2.940 0.032 1.414 4.623 0.039 0.753 0.816 0.039 0.022 864 chr20 48827077 48885825 + 0 NA Intergenic MIR|SINE|MIR -27572 NM_001278655 100506115 Hs.235484 NM_001278655 LINC01272 - long intergenic non-protein coding RNA 1272 protein-coding 2.447 0.820 0.035 0.268 0.320 0.189 0.101 0.163 1.568 0.269 0.422 0.396 0.077 0.381 6.732 0.875 1.578 0.548 0.059 0.056 0.375 0.202 0.115 0.608 3.406 0.213 0.183 0.101 0.747 1.356 0.122 0.086 1.400 0.182 0.091 0.385 1.009 0.720 0.321 0.492 0.039 0.034 791 chr2 102128753 102139003 + 0 NA Intergenic Intergenic -42713 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 1.881 1.859 0.036 1.888 2.891 0.665 2.797 1.914 4.453 1.550 0.694 2.587 5.371 3.542 2.490 6.257 0.122 4.372 0.021 3.251 3.045 0.072 0.129 3.035 1.253 0.648 1.830 12.071 0.778 1.293 0.233 2.660 0.765 1.719 1.275 1.252 0.170 1.513 5.661 0.815 1.201 984 chr3 189551186 189564697 + 0 NA intron (NM_001329964, intron 4 of 13) intron (NM_001329964, intron 4 of 13) 10230 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 0.673 0.168 0.096 0.800 1.461 0.056 1.008 0.418 8.565 5.137 2.124 0.783 0.035 0.921 0.635 1.025 1.574 0.221 0.063 0.631 0.177 0.017 0.170 0.246 0.027 0.032 2.344 0.059 0.288 0.126 0.060 1.599 1.176 0.109 1.753 0.264 0.431 0.697 0.023 0.021 0.019 243 chr11 67182382 67197347 + 0 NA intron (NM_020811, intron 8 of 8) AluSz|SINE|Alu -6071 NM_003952 6199 Hs.534345 NM_003952 ENSG00000175634 RPS6KB2 KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|SRK|STK14B|p70(S6K)-beta|p70S6Kb ribosomal protein S6 kinase B2 protein-coding 0.933 1.196 0.186 0.491 0.867 0.606 0.697 0.369 2.637 1.302 1.314 0.508 0.260 0.823 1.081 1.021 0.373 2.507 0.535 0.195 0.708 0.526 0.668 0.746 1.232 0.601 0.412 0.437 0.628 1.578 1.357 2.049 1.302 1.336 1.379 0.644 0.943 5.513 1.318 0.479 0.162 0.058 439 chr14 105928927 105945669 + 0 NA TTS (NM_001203258) TTS (NM_001203258) -1977 NR_073082 1397 Hs.534309 NM_001312 ENSG00000182809 CRIP2 CRIP|CRP2|ESP1 cysteine rich protein 2 protein-coding 1.824 1.202 0.185 0.283 1.122 0.227 0.798 0.108 20.117 13.656 15.802 4.732 0.950 0.261 0.569 2.192 2.303 0.115 0.771 0.653 0.720 0.444 0.666 0.452 0.320 0.151 0.121 1.848 0.184 1.498 4.734 0.094 0.454 2.156 0.476 0.212 6.500 0.722 0.349 0.247 0.204 0.106 205 chr11 15985346 15991886 + 0 NA 3' UTR (NM_017508, exon 15 of 15) 3' UTR (NM_017508, exon 15 of 15) 2551 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 2.471 0.583 0.085 0.202 0.547 0.172 0.425 0.815 9.884 4.021 8.315 1.355 0.432 0.934 1.742 2.040 0.464 1.565 0.182 0.021 1.261 0.786 0.123 5.557 0.465 0.109 0.096 1.827 2.229 1.264 0.111 0.641 3.481 1.778 0.326 1.608 3.117 0.071 0.184 0.677 0.018 0.012 131 chr1 200369525 200389239 + 0 NA promoter-TSS (NM_001281293) promoter-TSS (NM_001281293) -196 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 0.787 1.291 0.041 0.348 0.936 3.296 1.450 1.304 3.196 2.741 2.771 0.870 0.353 1.478 1.658 1.445 0.397 1.940 0.153 0.204 1.836 1.531 0.500 0.607 1.786 1.390 0.721 1.028 1.942 1.656 0.948 0.632 1.597 0.646 1.597 0.694 0.489 1.306 0.923 0.426 0.161 0.070 773 chr2 46389070 46400344 + 0 NA intron (NM_005400, intron 14 of 14) intron (NM_005400, intron 14 of 14) -129834 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.413 1.503 0.638 0.756 1.559 0.577 0.737 1.233 5.297 1.225 1.173 2.270 1.324 1.104 1.945 4.172 1.070 0.270 0.027 0.041 2.784 2.187 0.378 0.186 1.790 0.256 0.131 1.509 0.345 1.157 0.078 0.186 1.643 2.251 1.666 1.201 3.791 0.848 1.553 1.888 0.089 0.075 887 chr21 30670485 30689447 + 0 NA intron (NR_027655, intron 1 of 7) Tigger7|DNA|TcMar-Tigger 2441 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 0.637 1.231 2.163 0.188 0.651 0.471 0.432 0.307 1.219 0.743 0.733 0.183 0.260 0.311 0.784 0.551 0.216 1.002 0.147 0.745 0.665 0.593 0.447 0.956 0.568 0.785 0.368 0.330 1.673 0.857 1.200 0.387 0.737 0.733 0.620 0.582 0.565 0.622 0.275 0.174 0.216 0.170 944 chr3 52309972 52323197 + 0 NA Intergenic MER84|LTR|ERV1 -3925 NM_025222 80335 Hs.194110 NM_025222 ENSG00000164091 WDR82 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A WD repeat domain 82 protein-coding 2.732 2.855 0.698 0.717 2.013 4.175 2.749 1.166 3.836 2.537 1.360 1.003 0.668 1.285 2.404 1.698 1.410 1.828 2.744 1.195 0.973 1.152 1.601 1.825 2.719 4.049 1.887 1.118 2.046 3.779 4.127 2.079 1.406 2.703 1.898 0.851 1.132 3.047 2.188 1.458 1.677 1.066 447 chr15 60363245 60386567 + 0 NA Intergenic Intergenic 78485 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 0.182 0.106 0.032 0.144 0.289 0.390 0.201 0.408 2.095 0.549 2.680 0.012 0.114 0.439 1.034 0.322 0.517 0.074 0.025 0.006 0.134 0.068 0.032 0.144 0.641 0.240 0.148 0.178 0.354 0.109 0.028 0.434 0.550 0.229 0.205 0.918 0.258 0.142 0.834 0.160 0.467 0.578 979 chr3 184078205 184082663 + 0 NA promoter-TSS (NM_001171087) promoter-TSS (NM_001171087) -337 NM_001278714 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 11.127 3.590 1.724 1.434 5.098 4.339 6.736 2.147 6.184 5.437 4.806 1.804 2.213 4.044 6.272 3.275 3.186 2.606 2.479 3.450 5.406 7.571 4.302 3.853 9.020 9.707 4.210 3.275 4.204 4.513 7.095 1.554 4.036 5.002 6.475 1.785 2.997 4.841 4.380 2.646 3.513 1.960 401 chr14 32669212 32674294 + 0 NA TTS (NR_125730).3 TTS (NR_125730).3 502 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 1.642 1.828 5.833 1.450 2.770 2.856 3.511 1.391 17.020 17.708 3.388 2.188 1.186 1.868 1.206 1.826 0.657 2.971 1.631 4.170 1.579 1.550 0.656 2.110 3.227 1.887 0.844 1.285 1.512 3.972 3.069 3.041 1.203 2.955 3.854 1.014 1.048 3.464 2.606 1.544 0.725 0.494 394 chr14 21564097 21577410 + 0 NA intron (NM_001146683, intron 6 of 7) intron (NM_001146683, intron 6 of 7) 2110 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 1.368 1.354 0.438 0.327 1.126 5.425 1.272 0.747 5.144 2.200 2.057 0.571 0.577 0.754 1.101 1.140 0.372 1.603 1.068 2.981 1.214 1.372 1.178 12.062 2.171 1.340 0.814 1.481 1.876 5.279 1.805 3.377 2.675 1.177 2.320 1.970 0.883 3.646 1.587 1.164 0.891 0.648 806 chr2 178102182 178132864 + 0 NA intron (NM_001313902, intron 1 of 3) intron (NM_001313902, intron 1 of 3) 3215 NR_036075 100422824 NR_036075 ENSG00000265396 MIR3128 mir-3128 microRNA 3128 ncRNA 2.300 2.424 1.950 1.339 3.585 2.999 2.844 0.684 6.802 5.581 2.978 1.033 1.390 1.681 3.937 2.237 1.336 1.639 0.659 1.165 2.182 2.382 0.937 2.508 2.650 1.720 0.714 1.759 1.783 3.052 2.014 1.448 2.274 2.783 4.307 1.135 1.195 2.703 1.976 1.690 1.496 1.089 1237 chr8 42744357 42756160 + 0 NA intron (NR_027669, intron 1 of 5) AluJo|SINE|Alu 1160 NR_039679 100616115 NR_039679 ENSG00000120925 MIR4469 mir-4469 microRNA 4469 ncRNA 2.556 1.139 3.721 0.564 1.312 0.605 0.987 1.261 2.028 1.161 4.924 0.583 0.591 1.311 1.804 1.088 0.461 1.034 0.679 1.260 1.305 1.189 2.143 0.790 2.288 1.981 1.196 0.482 1.686 2.128 1.724 0.768 0.819 2.153 0.447 1.062 2.029 1.912 0.819 0.772 2.051 2.467 1169 chr6 151709166 151715970 + 0 NA 5' UTR (NM_020861, exon 1 of 3) 5' UTR (NM_020861, exon 1 of 3) 267 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 2.417 3.411 2.247 0.975 3.485 4.958 3.759 0.890 nan 5.718 4.333 0.838 1.042 1.570 3.120 2.249 2.686 2.177 1.140 2.891 2.133 2.700 3.477 3.250 4.981 5.400 2.305 2.503 2.531 3.803 8.220 1.219 2.268 5.783 3.142 1.673 2.606 11.420 2.031 2.331 2.996 2.120 993 chr4 26192372 26203273 + 0 NA Intergenic L1MB8|LINE|L1 -123510 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 0.284 0.159 0.011 0.918 0.978 0.398 0.357 0.636 1.341 0.560 0.298 1.047 2.566 0.646 0.266 4.119 0.052 0.868 0.046 0.013 1.129 0.659 0.028 0.049 0.613 0.454 0.223 0.749 2.844 0.068 0.790 0.088 0.134 0.281 2.488 0.112 0.045 0.995 0.428 0.454 0.951 0.921 747 chr19 50864298 50875438 + 0 NA promoter-TSS (NM_004851) promoter-TSS (NM_004851) -781 NM_004851 9476 Hs.512843 NM_004851 ENSG00000131400 NAPSA KAP|Kdap|NAP1|NAPA|SNAPA napsin A aspartic peptidase protein-coding 0.480 0.203 0.056 1.096 2.487 0.386 4.951 1.747 4.747 1.742 8.162 0.631 0.719 2.716 0.629 3.120 0.240 0.529 0.379 0.125 2.028 2.291 0.158 0.313 0.796 0.315 0.172 3.208 0.224 1.077 0.536 0.485 0.379 1.838 2.313 0.416 0.415 0.728 1.838 0.183 0.450 0.238 279 chr11 129866069 129875515 + 0 NA intron (NM_020228, intron 1 of 21) AluJb|SINE|Alu -1727 NR_024233 440072 Hs.630600 NM_001007543 LINC00167 C11orf37|NCRNA00167 long intergenic non-protein coding RNA 167 ncRNA 2.006 3.867 3.140 0.984 2.824 4.628 4.437 1.851 5.899 4.384 2.513 2.006 2.299 2.875 4.740 4.044 1.925 2.538 1.760 1.778 2.692 3.734 2.473 3.428 11.631 6.493 2.544 3.810 6.046 2.810 5.033 1.870 4.741 4.310 6.729 2.759 4.028 3.977 3.407 4.081 3.262 2.890 500 chr16 14046722 14055778 + 0 NA Intergenic Intergenic 37236 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 0.587 2.642 0.048 1.485 2.683 0.325 2.560 1.247 11.147 3.486 3.168 2.290 1.473 4.114 2.192 5.140 2.522 3.295 0.230 4.821 4.431 0.017 5.857 3.316 0.306 0.162 5.375 0.936 4.270 0.181 1.062 2.712 1.591 3.547 0.575 0.615 2.952 3.452 2.103 0.243 0.221 188 chr10 134476897 134485181 + 0 NA intron (NM_005539, intron 4 of 15) intron (NM_005539, intron 4 of 15) -13740 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 0.268 0.748 0.008 1.212 2.537 0.053 2.681 1.843 8.577 3.070 0.716 1.464 1.436 2.112 0.105 5.019 0.011 2.804 0.012 0.067 3.270 3.625 0.085 0.038 1.653 0.729 0.406 0.648 0.217 0.361 2.175 0.104 1.644 2.618 7.443 1.211 0.479 0.500 1.318 2.397 0.061 0.024 575 chr17 28663764 28707712 + 0 NA Intergenic Charlie7|DNA|hAT-Charlie -20204 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 0.283 0.757 0.117 1.573 2.168 0.046 1.582 1.244 7.238 2.015 2.218 0.697 0.243 2.579 1.269 2.161 0.131 0.164 0.180 0.176 2.156 1.373 0.154 0.190 0.252 0.295 0.147 0.389 0.266 1.341 0.208 1.741 2.923 0.681 0.390 0.607 0.365 0.335 0.875 0.383 0.054 0.034 946 chr3 57111367 57118942 + 0 NA Intergenic Intergenic -1818 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 1.177 0.990 0.124 1.190 2.358 0.116 6.191 5.363 1.858 0.979 0.678 0.620 0.325 1.944 3.291 4.235 0.951 0.989 0.014 0.146 1.430 1.097 0.507 0.365 0.572 0.957 0.526 2.220 0.342 1.182 1.367 0.553 1.443 3.833 0.466 0.964 0.501 1.581 1.193 0.291 0.487 0.282 39 chr1 48010481 48045809 + 0 NA Intergenic MIRb|SINE|MIR -125156 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 0.317 0.071 0.044 0.376 0.315 0.011 0.770 0.329 5.556 1.224 0.685 0.558 0.074 0.781 0.535 1.252 0.027 0.049 0.326 0.012 0.318 0.118 0.054 0.062 0.120 0.051 0.053 1.322 0.200 0.377 0.042 1.122 0.450 0.253 0.987 0.433 0.424 0.107 0.076 0.141 0.054 0.041 1293 chr9 32663284 32675379 + 0 NA Intergenic Intergenic -33664 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 0.075 0.844 0.005 0.236 0.239 0.332 0.260 1.386 3.710 0.854 0.595 0.364 0.885 0.470 0.265 2.093 0.039 0.076 0.025 0.023 4.605 4.044 0.030 0.077 0.122 0.273 0.153 0.945 0.133 0.067 0.058 1.360 3.472 0.230 0.785 1.737 0.608 0.015 1.442 0.985 0.014 0.017 754 chr2 2663234 2669197 + 0 NA Intergenic L3|LINE|CR1 -331130 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.037 0.037 0.032 0.053 0.022 0.069 0.018 0.262 0.583 0.108 0.074 0.037 0.080 0.907 0.045 0.016 0.047 0.011 0.012 0.084 0.138 0.078 0.066 0.063 0.193 0.181 0.012 5.709 2.796 0.060 0.030 0.194 0.125 0.029 0.027 0.169 0.087 0.114 1131 chr6 36389927 36413599 + 0 NA intron (NM_152990, intron 2 of 4) L1MC4|LINE|L1 -8781 NR_104481 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 0.982 1.286 0.896 0.365 1.411 3.999 0.720 0.580 1.985 1.081 1.585 0.550 0.342 0.510 1.509 1.529 0.726 0.963 0.495 0.743 0.903 0.901 1.344 2.102 1.867 1.506 0.721 0.375 1.211 1.489 1.883 1.311 1.731 1.876 1.858 0.600 1.134 5.074 0.954 0.515 0.487 0.366 603 chr17 40572869 40581980 + 0 NA Intergenic Intergenic -2086 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|FKSG13|cavin-1 polymerase I and transcript release factor protein-coding 1.273 4.322 0.952 1.105 1.938 4.508 2.452 1.731 nan 0.150 0.746 0.352 2.079 2.294 1.041 2.030 1.475 1.000 0.077 0.153 2.301 2.090 3.200 1.369 7.930 2.833 1.234 0.673 4.541 4.090 2.535 0.993 0.620 1.993 1.678 0.378 1.197 6.059 2.421 1.545 3.355 2.164 902 chr21 45184455 45210993 + 0 NA Intergenic AluJb|SINE|Alu -1468 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 1.100 1.446 0.387 1.559 2.990 1.088 1.001 1.485 3.715 1.832 1.860 0.787 0.629 2.981 4.534 4.241 0.940 0.802 0.213 0.841 2.070 2.155 0.818 2.244 1.704 0.850 0.462 0.911 2.679 1.601 1.276 0.439 1.540 2.829 1.559 1.557 0.877 1.136 1.033 0.412 0.390 0.220 13 chr1 8758484 8779882 + 0 NA intron (NM_001042681, intron 1 of 22) AluY|SINE|Alu 108516 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 0.720 1.096 2.623 0.208 0.857 4.546 0.914 0.318 nan 2.946 2.137 0.539 0.320 0.582 0.873 0.492 0.465 2.035 1.934 1.223 0.382 0.199 0.988 0.277 1.059 0.332 0.155 0.521 0.500 0.993 0.767 1.846 0.942 1.060 3.373 0.588 1.855 1.034 0.501 0.374 0.092 0.035 950 chr3 69128312 69144086 + 0 NA intron (NM_006407, intron 1 of 2) AluJo|SINE|Alu 2109 NM_006407 10550 Hs.518060 NM_006407 ENSG00000144746 ARL6IP5 DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding 2.594 1.906 1.890 1.650 4.375 1.687 5.912 2.627 3.093 2.383 2.242 2.260 1.719 4.010 2.343 2.914 1.480 1.578 0.241 0.422 1.887 1.932 0.549 3.994 2.657 1.483 0.775 1.969 1.508 1.946 1.906 2.034 1.608 2.569 11.661 1.240 0.817 0.961 3.131 1.524 0.303 0.207 807 chr2 183898970 183904562 + 0 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 1820 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 3.317 3.787 1.720 0.951 4.691 2.949 4.454 1.189 5.384 5.186 3.744 1.017 1.162 2.168 9.828 2.570 1.522 1.707 1.095 2.319 1.842 2.521 2.076 3.034 3.619 2.771 1.442 1.813 2.309 3.669 2.923 1.717 3.694 4.027 2.755 1.769 1.652 4.267 1.932 2.204 1.050 0.603 406 chr14 37322035 37329086 + 0 NA intron (NM_030631, intron 2 of 9) intron (NM_030631, intron 2 of 9) 96036 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 0.102 0.107 0.035 0.107 0.121 0.027 0.107 0.015 38.076 12.963 2.675 0.470 0.077 0.136 0.152 0.106 4.788 0.020 0.059 0.041 0.010 0.076 0.067 0.033 0.498 0.154 0.127 0.031 0.033 1.711 0.172 0.077 1.220 0.424 0.050 0.123 0.011 0.016 429 chr14 100703752 100707348 + 0 NA 5' UTR (NM_003403, exon 1 of 5) 5' UTR (NM_003403, exon 1 of 5) 448 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 7.656 4.786 3.971 0.480 3.610 8.067 6.502 1.581 12.966 10.372 12.018 1.364 2.064 2.027 3.134 2.958 2.779 2.133 3.014 5.603 4.790 7.200 2.974 5.091 7.985 7.790 3.622 3.652 6.213 8.533 14.710 3.335 8.885 4.445 6.514 1.966 4.839 9.936 4.878 8.000 3.360 1.564 851 chr20 39628739 39659686 + 0 NA intron (NM_001318196, intron 2 of 2) AluSx|SINE|Alu -13246 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 2.508 1.785 0.413 1.386 2.891 0.897 1.617 2.461 nan 3.628 2.456 1.724 2.633 2.421 1.857 2.597 1.163 1.852 0.502 0.478 1.025 0.974 0.458 1.647 3.999 1.778 0.917 1.748 2.829 1.205 2.951 1.567 2.139 3.488 3.761 1.354 1.781 1.396 1.732 2.429 0.569 0.527 1213 chr7 101456255 101468179 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 1335 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 0.810 1.603 5.468 1.149 3.344 3.590 3.628 0.566 3.092 1.692 3.447 0.557 0.714 2.227 0.879 2.587 0.504 1.780 0.561 0.921 0.991 1.056 1.473 2.278 2.273 1.244 0.726 2.343 1.190 6.174 4.368 1.931 2.328 2.748 1.609 2.009 3.386 4.083 1.972 0.419 0.512 0.410 497 chr16 11920047 11935415 + 0 NA TTS (NM_015659) TTS (NM_015659) -5042 NR_024049 400500 Hs.24611 NR_024049 ENSG00000262117 BCAR4 - breast cancer anti-estrogen resistance 4 (non-protein coding) ncRNA 0.122 0.218 5.153 0.025 0.186 0.354 0.083 0.007 0.340 0.126 0.107 0.038 0.053 0.029 0.192 0.245 0.256 0.456 0.039 0.027 0.169 0.071 0.101 0.153 0.251 0.067 0.041 0.035 0.097 0.185 0.148 0.072 0.152 0.175 0.114 0.095 0.043 0.178 0.113 0.095 0.022 0.017 240 chr11 65773379 65790753 + 0 NA Intergenic AluY|SINE|Alu 2604 NM_001323 1474 Hs.139389 NM_001323 ENSG00000175315 CST6 - cystatin E/M protein-coding 4.633 2.470 0.918 0.743 1.814 0.174 0.784 1.847 3.843 1.902 1.214 1.179 1.422 4.291 1.648 3.928 0.898 0.541 0.155 0.056 1.960 1.754 0.376 0.117 5.894 5.304 2.394 1.107 4.453 0.423 1.566 0.068 0.787 1.802 2.655 0.317 0.684 0.422 0.766 1.270 1.203 0.847 789 chr2 102047823 102070562 + 0 NA intron (NM_001145664, intron 2 of 11) L1MD2|LINE|L1 31973 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 0.101 0.927 0.011 0.611 0.478 0.047 0.165 0.423 0.264 0.050 0.128 0.508 2.471 0.671 0.190 2.546 0.008 2.104 0.039 0.006 0.262 0.077 0.029 0.094 0.173 0.093 0.067 0.357 6.645 0.122 0.512 0.014 0.173 0.107 0.265 0.037 0.153 0.061 0.716 3.999 0.213 0.260 346 chr12 66260488 66297716 + 0 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -3155 NM_001292023 100129940 Hs.685856 NM_001292023 ENSG00000197301 LOC100129940 - uncharacterized LOC100129940 protein-coding 0.606 1.025 0.586 0.234 0.311 2.497 0.719 0.753 0.920 0.242 0.362 0.226 0.577 0.316 0.235 0.615 0.013 2.700 0.070 3.107 0.722 0.358 0.026 0.106 0.352 0.193 0.128 0.192 1.938 0.835 2.140 0.642 0.059 0.428 3.624 0.108 0.080 0.211 0.404 0.707 2.776 3.148 109 chr1 156459776 156488596 + 0 NA Intergenic Intergenic -3552 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 1.946 2.962 1.124 0.842 2.078 5.616 2.193 1.657 4.984 2.884 2.295 1.731 2.584 2.103 1.313 2.218 0.775 2.617 4.243 1.726 3.230 3.862 2.367 4.291 4.572 3.540 1.277 1.288 2.207 3.201 2.660 1.393 2.557 3.350 2.455 1.921 1.928 7.590 2.762 1.801 1.479 1.255 666 chr18 3379313 3390100 + 0 NA Intergenic MER57B1|LTR|ERV1 -27219 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 0.188 0.215 0.064 0.088 0.241 0.156 0.119 0.039 0.361 0.097 0.144 0.245 0.044 0.082 6.257 0.197 0.500 1.414 0.045 0.026 0.059 0.067 0.054 7.365 1.020 0.114 0.111 0.014 0.130 0.808 0.124 0.066 0.670 0.305 0.017 0.327 5.280 0.268 0.147 0.020 0.027 0.010 393 chr14 20760298 20774619 + 0 NA exon (NM_138376, exon 4 of 10) exon (NM_138376, exon 4 of 10) 6695 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 0.358 0.243 0.017 0.623 0.847 0.101 0.352 0.384 2.442 1.252 0.386 0.928 0.083 0.962 0.229 1.210 0.053 0.546 0.041 0.061 0.305 0.165 0.066 0.542 0.133 0.127 0.114 0.530 0.267 0.230 0.204 0.088 0.257 0.362 2.940 0.119 0.104 0.183 0.835 0.127 0.044 0.021 16 chr1 12647083 12681503 + 0 NA intron (NM_004753, intron 1 of 5) intron (NM_004753, intron 1 of 5) -7884 NM_001324370 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 2.330 0.820 0.413 0.821 1.356 0.858 1.317 0.619 2.672 1.519 1.950 0.939 0.748 1.669 2.272 1.681 1.445 4.054 0.300 0.242 0.472 0.352 0.414 1.325 3.743 0.286 0.188 0.595 1.270 3.110 1.933 1.397 2.505 0.525 2.473 1.075 2.615 0.514 0.452 1.467 0.609 0.555 299 chr12 15096332 15116595 + 0 NA intron (NM_001175, intron 1 of 5) intron (NM_001175, intron 1 of 5) -2378 NM_001321422 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 0.647 0.300 0.015 0.797 2.057 0.037 3.545 1.645 6.582 2.776 4.493 1.191 0.548 1.595 2.435 2.197 0.606 0.616 0.483 0.007 0.458 0.325 0.024 0.080 1.059 0.393 0.210 2.088 1.695 0.121 0.172 0.074 1.289 1.484 0.146 0.346 1.341 0.190 0.300 0.207 0.026 0.017 673 chr18 45741601 45750130 + 0 NA intron (NM_001318841, intron 2 of 4) MIR|SINE|MIR -82185 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 0.068 0.218 0.051 0.025 0.015 0.057 0.025 2.733 0.336 0.158 0.017 0.005 0.039 0.160 0.033 0.023 0.054 6.020 0.065 0.025 0.026 0.065 0.100 0.030 0.018 0.036 0.070 0.134 0.018 0.120 1.246 0.011 0.115 0.149 0.073 0.056 0.206 0.014 645 chr17 74115098 74154826 + 0 NA intron (NM_001454, intron 2 of 2) intron (NM_001454, intron 2 of 2) -1675 NR_040017 100507218 Hs.654866 NR_040017 ENSG00000267128 RNF157-AS1 - RNF157 antisense RNA 1 ncRNA 0.190 0.190 0.098 0.124 0.294 0.041 0.457 0.347 11.385 1.636 1.065 0.228 0.059 0.321 0.283 0.324 0.126 0.188 1.309 0.082 0.131 0.075 0.156 0.320 0.261 0.060 0.037 0.244 0.213 0.573 0.237 0.190 0.344 0.251 0.079 0.332 0.135 0.871 0.077 0.035 0.032 0.023 1011 chr4 111529323 111546369 + 0 NA TTS (NM_001204397) TTS (NM_001204397) 6408 NM_000325 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.076 0.974 0.028 2.418 5.608 0.074 0.370 0.516 0.781 0.259 0.232 0.263 0.151 0.103 0.186 0.437 0.011 0.387 0.311 0.033 0.041 0.029 0.068 0.107 0.135 0.128 0.060 0.265 0.352 0.143 0.443 0.570 0.211 3.727 0.109 0.115 0.026 0.786 0.023 0.009 0.010 73 chr1 151318112 151326063 + 0 NA Intergenic AluJb|SINE|Alu -2318 NM_000449 5993 Hs.632472 NM_000449 ENSG00000143390 RFX5 - regulatory factor X5 protein-coding 1.042 1.254 0.617 1.550 1.979 1.724 0.716 1.127 9.898 4.289 0.648 1.393 1.136 1.097 0.669 2.442 0.419 1.563 0.808 0.488 1.538 1.155 0.952 1.546 1.536 1.143 0.540 0.299 0.970 1.270 1.528 1.777 2.291 4.647 1.861 0.703 0.945 2.728 2.291 0.844 0.572 0.396 1161 chr6 129808589 129829693 + 0 NA intron (NM_000426, intron 58 of 64) intron (NM_000426, intron 58 of 64) 212229 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 3.893 0.785 0.015 1.196 1.715 1.899 1.803 1.608 2.310 1.350 1.726 0.878 1.668 3.317 0.417 2.164 0.255 2.036 0.019 0.026 2.896 2.476 0.014 1.258 2.057 1.842 0.834 2.473 1.838 0.220 1.964 0.374 0.398 1.911 1.312 0.418 0.130 1.488 1.690 1.588 4.145 5.711 433 chr14 103556055 103612481 + 0 NA Intergenic MER50|LTR|ERV1 4978 NR_138038 105370683 Hs.252904 NR_138038 LINC00677 C14orf74 long intergenic non-protein coding RNA 677 ncRNA 0.317 1.724 0.047 0.617 1.406 0.177 0.853 0.723 5.542 2.914 0.751 1.502 0.483 1.230 4.931 1.199 0.807 0.618 0.225 0.095 1.816 1.585 0.195 3.067 1.644 0.613 0.367 0.592 0.176 4.031 0.541 0.172 2.939 0.836 0.349 0.593 0.770 0.403 1.397 0.874 0.053 0.029 860 chr20 47892402 47899066 + 0 NA promoter-TSS (NM_021035) promoter-TSS (NM_021035) 252 NR_002433 26765 NR_002433 ENSG00000209042 SNORD12C E2|E2-1|E3|RNU106|SNORD106|U106 small nucleolar RNA, C/D box 12C snoRNA 6.561 5.291 2.521 1.171 4.197 3.782 4.406 1.519 5.791 4.050 6.611 2.431 2.152 4.910 5.892 3.274 3.430 3.630 2.137 3.156 2.107 2.160 2.711 7.736 9.623 6.304 2.900 2.589 4.607 4.507 4.759 2.314 4.721 3.294 3.750 3.490 3.650 8.253 4.281 5.091 4.280 3.001 193 chr11 605401 617048 + 0 NA intron (NM_020901, intron 17 of 17) intron (NM_020901, intron 17 of 17) 4504 NM_004031 3665 Hs.166120 NM_001572 ENSG00000185507 IRF7 IMD39|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H interferon regulatory factor 7 protein-coding 0.673 1.145 0.271 0.384 1.391 0.492 0.932 0.542 2.646 1.312 2.376 0.351 0.415 0.514 0.240 1.438 0.033 0.269 0.643 0.095 0.419 0.434 0.434 0.212 0.960 0.794 0.424 0.741 0.703 0.804 0.863 0.223 0.454 3.131 1.082 0.190 0.199 1.067 0.400 0.645 0.287 0.246 700 chr19 14132303 14144148 + 0 NA promoter-TSS (NM_001311197) promoter-TSS (NM_001311197) -735 NM_001311197 117579 Hs.352155 NM_080864 ENSG00000171136 RLN3 H3|RXN3|ZINS4|insl7 relaxin 3 protein-coding 0.427 0.440 0.016 1.073 1.496 0.470 3.328 1.342 nan 0.822 0.976 0.468 0.446 1.667 1.332 2.368 0.485 0.652 0.175 0.339 3.981 4.130 0.509 0.605 0.670 0.815 0.349 0.750 1.164 1.105 1.158 0.414 0.915 2.092 0.515 0.260 0.846 1.575 1.448 0.567 0.170 0.038 1180 chr7 12678711 12702219 + 0 NA intron (NM_033128, intron 12 of 13) intron (NM_033128, intron 12 of 13) -35987 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 1.263 0.825 0.021 0.234 0.403 0.462 0.368 0.724 0.324 0.151 0.229 0.736 0.678 0.437 0.285 1.145 0.680 3.302 0.073 0.802 0.880 0.407 0.289 0.434 1.515 0.413 0.269 0.163 1.683 0.246 0.218 0.259 0.530 0.706 0.243 0.369 0.495 0.158 0.847 0.434 0.262 0.177 974 chr3 179039577 179044337 + 0 NA intron (NM_016331, intron 1 of 6) intron (NM_016331, intron 1 of 6) 406 NM_016331 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 5.541 2.732 10.509 0.800 2.099 2.631 4.387 1.306 2.639 2.247 3.481 0.766 0.954 2.157 3.681 2.712 1.641 2.097 1.027 1.771 3.513 4.405 3.464 2.814 6.466 4.435 2.371 1.108 3.102 2.721 5.244 2.705 2.966 3.339 3.849 1.106 1.985 4.129 2.330 1.382 1.463 0.919 538 chr16 86661889 86670804 + 0 NA Intergenic Intergenic 54231 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 0.660 0.095 0.042 0.095 0.191 0.080 0.614 0.149 0.066 0.065 0.082 0.106 0.516 0.691 0.519 0.011 0.764 0.022 0.409 0.137 0.115 0.129 0.217 0.123 0.026 8.031 0.187 0.260 2.586 0.411 0.024 0.309 0.468 0.121 0.072 0.062 1.013 0.032 0.006 1245 chr8 59762253 59771859 + 0 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -194652 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1.586 0.966 0.142 1.104 1.821 0.255 2.648 1.933 0.951 0.556 0.555 1.709 0.756 0.875 0.350 2.054 0.558 2.539 0.162 0.014 4.591 4.422 0.093 0.359 1.689 0.640 0.502 2.483 3.125 0.212 0.505 0.647 0.144 1.357 0.018 0.466 0.035 0.199 0.969 1.564 0.012 0.011 739 chr19 48771975 48778514 + 0 NA intron (NM_001331098, intron 2 of 5) CpG 742 NM_001331098 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 0.132 2.198 0.277 1.619 6.105 1.700 1.486 1.245 nan 1.223 0.743 1.793 0.467 1.098 7.486 4.827 2.864 1.610 0.473 1.489 0.859 0.707 0.437 2.503 0.754 2.970 1.168 0.834 0.413 2.902 2.523 2.766 1.338 5.825 4.775 1.836 0.583 1.903 3.847 0.196 0.229 0.031 207 chr11 34640297 34680325 + 0 NA intron (NM_001206616, intron 1 of 8) intron (NM_001206616, intron 1 of 8) 6300 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 4.057 1.401 0.341 0.763 1.532 0.150 0.569 1.253 4.838 2.018 2.420 0.624 0.364 1.409 4.497 2.017 0.394 1.800 0.063 0.038 2.173 1.442 0.031 4.067 1.660 0.732 0.377 0.701 0.912 4.210 0.039 2.345 1.376 1.158 0.028 1.483 1.369 0.774 0.786 0.593 0.426 0.440 57 chr1 94125211 94188524 + 0 NA intron (NM_001261408, intron 3 of 13) intron (NM_001261408, intron 3 of 13) -9473 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 2.400 1.883 0.394 1.368 2.057 1.112 1.990 1.395 3.432 1.313 0.478 1.786 0.969 1.578 3.513 2.678 1.196 1.705 0.435 0.033 2.076 2.020 0.444 1.794 6.263 1.606 0.650 2.094 4.790 0.858 1.664 0.358 2.265 1.764 3.432 0.857 1.227 1.390 0.933 1.723 3.135 3.287 280 chr11 130182386 130190077 + 0 NA Intergenic Intergenic -1624 NM_001301098 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 1.471 1.413 4.033 0.317 1.493 1.336 1.985 1.533 1.801 1.235 0.739 0.589 0.464 2.548 1.809 1.131 0.906 0.704 0.465 0.649 1.515 1.481 1.049 0.501 3.294 1.615 0.851 1.666 1.028 1.577 1.834 1.066 2.157 1.665 2.557 1.426 1.215 1.686 1.172 0.932 0.532 0.331 11 chr1 7350876 7363109 + 0 NA intron (NM_015215, intron 5 of 22) L2a|LINE|L2 -474337 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 2.266 0.942 0.015 0.093 0.026 0.135 0.184 0.009 nan 0.046 0.029 0.060 0.988 0.542 0.032 1.445 0.560 2.648 0.114 0.334 2.002 1.937 1.244 4.465 2.283 0.670 0.396 0.237 7.910 1.751 1.801 0.503 0.632 0.065 0.091 1.134 0.260 1.532 1.725 1.436 2.370 2.158 918 chr22 37952602 37968105 + 0 NA intron (NM_152243, intron 1 of 2) intron (NM_152243, intron 1 of 2) 3882 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 6.553 1.278 0.073 1.197 2.817 1.697 4.421 1.117 7.846 3.593 3.182 1.151 0.562 1.244 3.188 1.881 1.245 1.385 0.768 0.761 0.445 0.364 0.162 1.216 1.507 1.575 0.749 0.474 0.553 2.068 1.037 3.285 1.736 4.602 2.026 0.796 1.651 3.119 1.430 0.849 0.520 0.322 457 chr15 71077945 71105370 + 0 NA Intergenic Intergenic -35807 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 0.125 0.866 0.022 0.408 0.371 0.279 0.174 0.725 0.686 0.181 0.083 0.981 1.005 0.317 0.260 0.981 0.310 3.660 0.095 0.031 0.615 0.412 0.229 0.129 1.036 0.838 0.529 0.521 1.974 0.971 1.380 0.069 0.307 0.355 0.530 0.179 0.072 0.290 0.975 1.140 3.963 3.618 592 chr17 38218306 38232698 + 0 NA intron (NM_199334, intron 1 of 8) intron (NM_199334, intron 1 of 8) 6434 NM_199334 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor, alpha protein-coding 5.932 3.924 0.357 0.132 0.830 0.697 0.405 0.432 3.330 1.219 0.879 0.425 0.574 0.433 0.275 0.908 0.139 1.215 1.252 1.177 0.742 0.402 1.015 3.056 0.446 0.184 0.180 0.418 0.526 5.379 1.125 1.578 1.380 0.665 0.379 0.334 0.404 1.276 0.744 0.831 0.396 0.227 1294 chr9 32692771 32707521 + 0 NA Intergenic LTR78|LTR|ERV1 -64479 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 0.126 0.191 0.013 0.630 0.258 0.056 0.257 2.294 7.069 1.809 1.715 0.644 0.968 0.968 0.235 2.614 0.246 0.188 0.014 0.009 5.657 4.850 0.030 0.055 0.118 0.365 0.249 2.843 0.109 0.077 0.033 1.018 2.306 0.609 0.291 0.756 0.203 0.008 2.406 0.459 0.007 0.024 267 chr11 118963912 118980037 + 0 NA intron (NM_001382, intron 1 of 8) intron (NM_001382, intron 1 of 8) 811 NM_001382 1798 Hs.524081 NM_001382 ENSG00000172269 DPAGT1 ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 protein-coding 1.786 3.258 1.456 0.741 2.433 2.878 2.445 1.067 4.034 1.930 1.286 1.791 1.399 2.869 4.039 2.504 0.984 1.769 0.900 0.879 1.896 1.918 2.059 2.497 7.369 4.058 2.012 1.274 3.735 2.092 3.511 1.482 3.249 2.935 4.456 1.478 2.542 3.911 2.029 2.531 1.405 0.849 151 chr1 249106825 249121813 + 0 NA intron (NM_030645, intron 2 of 6) intron (NM_030645, intron 2 of 6) 5246 NM_001322462 80851 Hs.298573 NM_030645 ENSG00000175137 SH3BP5L - SH3 binding domain protein 5 like protein-coding 0.991 1.111 0.331 0.329 0.707 0.689 0.789 0.366 1.733 1.104 1.034 0.361 0.302 0.922 0.630 0.796 0.352 0.701 0.274 0.946 0.946 0.856 0.669 1.552 1.528 4.721 1.826 0.613 1.555 1.174 1.001 0.630 1.311 0.853 0.605 0.474 0.701 0.782 1.550 1.151 8.961 8.720 223 chr11 63374597 63382472 + 0 NA intron (NM_001128203, intron 2 of 4) intron (NM_001128203, intron 2 of 4) 3375 NM_007069 11145 Hs.502775 NM_007069 ENSG00000176485 PLA2G16 AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 phospholipase A2 group XVI protein-coding 6.601 1.045 0.378 0.214 0.605 1.713 1.495 1.182 0.987 0.522 2.055 0.218 0.344 1.183 5.101 0.884 0.170 1.823 0.063 0.518 1.654 1.451 0.540 0.233 1.343 1.530 0.986 1.543 0.466 2.548 1.090 0.180 0.374 1.079 0.737 0.265 0.813 0.711 0.414 0.152 0.205 0.059 699 chr19 14089297 14099421 + 0 NA exon (NM_002918, exon 3 of 21) exon (NM_002918, exon 3 of 21) 22775 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 0.093 0.605 0.183 1.103 2.004 0.050 4.348 1.082 nan 3.367 1.880 0.505 0.686 2.433 0.142 1.724 0.038 0.072 1.454 0.015 1.913 2.323 0.196 0.116 0.171 0.447 0.309 2.285 0.202 0.193 0.255 0.008 0.067 2.521 0.073 0.049 0.139 0.206 0.528 0.202 0.028 716 chr19 39119773 39211706 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 27483 NM_001322033 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 4.662 2.658 1.335 1.221 3.064 1.082 1.435 0.826 2.491 1.342 1.685 1.032 2.115 1.140 1.875 2.668 1.579 2.868 0.461 0.066 1.939 1.758 1.275 1.605 5.027 2.831 1.354 0.775 2.225 5.091 3.497 1.145 0.695 4.497 1.150 1.462 2.161 0.487 1.271 2.049 3.923 3.991 630 chr17 56060554 56073606 + 0 NA Intergenic Intergenic -1455 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 1.962 3.578 2.548 1.085 3.330 1.189 2.582 1.056 10.980 7.272 2.619 1.298 2.694 1.763 1.359 2.664 0.835 1.680 1.383 1.032 2.048 2.447 1.445 1.715 4.400 1.612 0.693 1.610 3.448 3.566 4.263 1.312 1.351 3.007 1.591 0.750 1.105 2.647 2.150 1.829 2.945 2.615 1220 chr7 137661714 137694104 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 8938 NM_194071 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 1.097 1.294 0.145 0.659 1.312 0.251 1.163 1.274 5.445 1.817 3.348 0.491 0.263 1.667 1.117 0.690 0.230 1.491 0.130 0.060 0.791 0.513 0.324 0.598 0.563 0.289 0.157 1.732 0.577 0.548 0.434 0.570 1.263 1.526 0.400 0.585 2.124 0.310 0.695 0.304 0.103 0.041 190 chr10 135088016 135094461 + 0 NA promoter-TSS (NM_001164489) promoter-TSS (NM_001164489) -831 NM_001164489 101 Hs.501574 NM_001109 ENSG00000151651 ADAM8 CD156|CD156a|MS2 ADAM metallopeptidase domain 8 protein-coding 2.453 1.450 0.953 2.580 4.378 1.820 0.908 1.619 4.922 2.196 3.395 1.679 1.887 2.134 1.758 5.188 0.134 1.254 0.124 0.085 1.508 1.323 0.150 0.425 5.977 0.392 0.156 0.457 0.475 0.213 0.774 0.024 2.697 6.307 0.517 1.064 0.986 0.372 0.977 4.248 0.259 0.102 176 chr10 104523205 104540328 + 0 NA intron (NM_001083913, intron 1 of 3) AluY|SINE|Alu -4122 NM_017787 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1-like protein-coding 0.083 0.404 1.805 0.110 0.167 0.033 0.152 0.037 0.325 0.093 0.149 0.017 0.069 0.038 0.112 0.237 0.167 0.129 0.047 0.057 0.157 0.068 1.543 0.196 0.199 0.085 0.046 0.104 0.140 0.623 0.137 0.027 0.194 0.108 0.104 0.063 1.218 0.257 0.069 0.046 1.278 0.695 162 chr10 34810615 34818941 + 0 NA intron (NM_001184785, intron 2 of 24) AluSc|SINE|Alu 289475 NM_001184787 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.475 1.691 0.081 0.269 1.013 5.797 1.414 0.698 0.634 0.155 0.275 0.474 1.672 0.645 0.345 1.458 1.466 3.340 0.035 0.074 1.840 1.206 1.649 3.421 1.346 0.613 0.398 0.985 4.015 3.292 0.464 0.381 0.969 1.757 26.132 0.589 0.247 0.676 1.988 1.131 2.507 1.158 121 chr1 167187711 167200265 + 0 NA intron (NM_002697, intron 1 of 15) intron (NM_002697, intron 1 of 15) 3865 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 2.258 1.757 0.971 0.992 2.833 0.987 1.927 0.919 4.352 2.181 2.153 1.118 0.451 2.798 2.882 1.871 0.911 1.331 0.658 2.119 1.607 1.587 1.000 2.257 2.973 1.983 0.807 1.162 1.187 2.484 1.508 1.282 2.357 3.059 1.681 1.767 1.059 1.733 2.021 0.886 1.321 1.330 1072 chr5 133836407 133850718 + 0 NA intron (NR_105045, intron 1 of 1) AluSp|SINE|Alu 1319 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 3.780 1.984 0.277 2.790 4.890 1.970 2.282 3.587 15.304 8.020 5.444 3.796 2.136 2.781 2.697 7.702 2.298 2.865 1.398 0.136 3.421 2.923 0.866 1.080 4.566 2.705 1.229 4.439 1.557 4.022 6.998 3.167 3.495 6.215 2.534 2.948 0.840 1.013 1.371 1.832 5.191 3.047 1133 chr6 41038669 41042714 + 0 NA promoter-TSS (NM_021705) promoter-TSS (NM_021705) -16 NM_021705 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 6.104 7.120 3.222 1.475 5.726 4.754 4.515 2.323 8.223 7.557 8.831 2.480 1.800 2.424 6.240 7.033 1.937 3.772 3.752 5.614 5.192 5.730 1.908 4.436 6.850 7.095 3.166 2.539 8.703 4.729 6.475 4.999 4.679 9.630 8.180 2.606 3.700 8.865 5.481 3.889 4.828 3.510 577 chr17 29287201 29299667 + 0 NA Intergenic L1M4|LINE|L1 -4522 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 0.693 2.689 0.729 1.715 3.134 1.562 1.406 0.918 0.809 0.425 1.675 0.658 0.796 1.463 1.303 1.629 0.545 0.916 0.065 0.601 3.365 3.341 0.741 5.502 1.271 0.731 0.407 0.796 6.476 3.866 1.202 1.433 1.821 2.577 0.908 0.818 1.342 2.308 1.652 0.574 0.453 0.316 117 chr1 161194783 161198402 + 0 NA promoter-TSS (NR_049819) promoter-TSS (NR_049819) -384 NR_049819 100847090 NR_049819 ENSG00000158882 MIR5187 mir-5187 microRNA 5187 ncRNA 0.973 0.688 0.052 0.822 1.997 13.198 0.978 0.933 4.759 2.176 3.265 1.291 2.512 1.904 0.845 2.317 0.432 1.931 7.416 0.805 1.239 1.061 0.797 4.275 2.427 3.096 1.450 0.614 0.889 1.126 1.536 2.693 1.835 0.839 4.526 1.589 0.724 7.891 2.179 1.160 0.780 0.475 861 chr20 48752962 48771260 + 0 NA intron (NM_001162505, intron 1 of 5) AluSq2|SINE|Alu 8224 NM_199203 387522 Hs.744839 NM_003349 ENSG00000124208 TMEM189-UBE2V1 CROC-1B|CROC1B|KUA-UEV TMEM189-UBE2V1 readthrough protein-coding 4.790 1.785 1.046 0.873 2.036 1.766 1.352 0.810 2.887 1.166 2.181 1.263 0.453 0.720 1.505 1.025 1.618 0.961 0.438 0.643 0.912 0.646 0.600 1.589 2.472 0.718 0.387 0.746 1.727 1.802 1.376 0.668 1.322 2.291 0.820 1.585 1.096 2.341 0.846 1.745 0.359 0.218 94 chr1 155009543 155026215 + 0 NA non-coding (NR_040773, exon 4 of 4) non-coding (NR_040773, exon 4 of 4) 5762 NR_040772 100505666 Hs.657533 NR_040772 DCST1-AS1 - DCST1 antisense RNA 1 ncRNA 1.151 1.374 0.082 0.933 2.359 0.529 1.574 1.139 4.925 1.240 2.068 0.925 0.876 1.691 1.226 1.189 0.385 0.736 0.771 0.382 1.602 1.300 0.471 1.802 2.247 1.001 0.507 0.747 0.580 1.621 0.926 3.737 5.154 1.832 1.562 1.095 1.909 3.631 1.307 0.284 0.570 0.360 870 chr20 52194639 52244557 + 0 NA Intergenic L1M5|LINE|L1 -5295 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 3.573 3.210 1.373 1.013 2.332 2.857 2.460 1.286 5.653 4.256 4.640 1.388 2.527 2.299 3.840 1.791 3.490 1.979 0.088 2.018 2.162 2.161 1.158 4.362 5.275 2.503 1.178 1.670 6.435 2.787 3.632 1.588 2.049 2.099 2.522 1.445 2.052 5.737 2.497 2.896 2.788 2.724 790 chr2 102076678 102093823 + 0 NA intron (NM_001145664, intron 1 of 11) intron (NM_001145664, intron 1 of 11) 5915 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 0.214 1.387 0.003 0.233 0.238 0.047 0.099 0.068 0.431 0.140 0.111 0.068 2.058 0.240 0.129 1.776 0.022 2.518 0.035 0.016 0.314 0.113 0.185 0.323 0.333 0.169 0.096 0.059 9.705 0.182 0.245 0.088 0.240 0.075 0.054 0.021 0.158 0.588 0.086 2.507 0.947 0.822 1324 chr9 137257445 137277715 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) -3561 NM_001291920 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.588 2.200 0.030 1.196 2.785 0.158 0.324 0.026 3.451 1.461 0.195 1.401 0.595 0.153 1.948 2.209 1.135 0.644 0.030 0.055 1.953 1.858 0.163 4.359 2.460 2.071 1.048 0.897 0.084 2.485 0.179 0.019 0.281 3.019 0.150 1.113 0.577 0.225 1.099 0.108 0.730 0.342 1250 chr8 71313600 71317145 + 0 NA intron (NM_001321703, intron 1 of 22) CpG 118 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 3.628 5.720 4.576 1.862 7.320 8.025 7.404 1.166 12.169 10.039 10.248 2.012 2.075 2.286 3.104 3.904 4.292 3.211 5.215 6.018 3.088 4.615 4.651 3.237 6.639 8.622 4.119 2.092 6.875 12.096 18.470 5.258 8.494 6.749 5.737 2.934 2.736 4.463 3.133 3.008 3.736 2.269 22 chr1 24688756 24703249 + 0 NA intron (NM_178122, intron 6 of 7) L2b|LINE|L2 -43975 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 1.141 0.279 0.077 0.849 0.786 0.103 0.322 2.277 1.246 0.386 0.627 0.894 0.222 1.401 0.933 2.555 0.139 0.679 0.048 0.055 0.629 0.280 0.121 0.547 0.178 0.113 0.043 0.580 0.180 0.884 0.279 0.376 1.231 1.356 2.554 0.592 2.406 0.382 0.337 0.253 0.083 0.056 181 chr10 114707999 114725250 + 0 NA intron (NM_001198530, intron 3 of 10) intron (NM_001198530, intron 3 of 10) 6615 NM_001146285 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 2.357 4.829 2.770 0.824 2.226 3.194 2.395 1.297 1.952 0.823 1.659 0.390 1.141 1.756 1.226 3.070 1.671 2.861 0.986 1.930 1.340 1.498 1.598 2.251 2.844 2.394 1.088 1.949 1.352 3.918 2.164 1.046 1.695 1.857 3.266 1.818 0.680 1.618 2.079 1.808 0.929 0.635 629 chr17 55922864 56048574 + 0 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -4969 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 1.188 1.997 1.162 1.478 2.727 0.853 1.505 1.179 15.586 6.244 2.199 1.371 2.015 1.901 0.773 3.478 0.390 1.614 1.046 0.147 2.118 1.827 0.833 1.348 2.786 0.507 0.266 1.145 1.910 3.499 2.211 0.688 1.083 2.665 1.319 0.739 0.743 0.775 1.530 0.997 3.546 2.990 398 chr14 29037183 29050999 + 0 NA Intergenic Intergenic 190434 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 1.102 0.542 0.027 0.178 0.788 2.111 0.496 0.624 8.711 8.096 1.061 2.306 1.146 0.585 0.063 0.989 0.022 1.578 0.007 0.020 1.201 0.901 0.011 0.663 0.393 0.423 0.305 0.100 1.751 0.059 0.036 0.006 0.124 0.274 0.034 0.132 0.054 0.160 0.957 3.327 2.989 3.935 172 chr10 75333070 75353341 + 0 NA intron (NM_001320441, intron 1 of 14) AluSq2|SINE|Alu -7772 NM_152586 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 0.419 0.498 3.486 0.272 0.671 0.050 1.070 0.372 1.088 0.650 1.563 0.130 0.157 0.338 0.885 0.614 0.629 1.169 0.089 0.068 0.520 0.212 0.058 0.117 0.182 0.157 0.042 0.364 0.178 0.253 0.355 0.375 0.338 1.267 0.508 0.289 0.362 0.095 0.512 0.142 0.170 0.115 413 chr14 50405929 50449248 + 0 NA Intergenic AluSx|SINE|Alu -5529 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 2.214 0.402 1.426 0.818 2.464 0.651 2.353 2.352 7.318 2.543 5.543 2.104 1.375 1.773 1.923 2.269 0.962 1.283 0.203 0.049 3.967 2.628 0.138 0.165 0.538 0.131 0.123 2.083 1.377 1.978 0.395 0.412 2.026 2.622 1.729 0.889 1.027 0.360 0.840 1.017 1.161 0.904 574 chr17 27914664 27923086 + 0 NA Intergenic Intergenic -1652 NM_152345 124930 Hs.662164 NM_152345 ENSG00000198720 ANKRD13B - ankyrin repeat domain 13B protein-coding 2.975 3.862 0.146 1.370 2.665 1.046 3.520 0.857 6.522 4.327 2.116 1.640 1.154 1.670 2.497 1.065 0.611 1.154 0.823 2.624 1.388 1.336 2.477 5.206 6.389 1.700 0.904 0.457 0.950 8.634 3.099 1.527 1.382 2.960 2.581 0.831 1.121 8.822 1.507 1.005 2.393 1.442 326 chr12 56587326 56599532 + 0 NA Intergenic Intergenic -10071 NM_003075 6601 Hs.236030 NM_003075 ENSG00000139613 SMARCC2 BAF170|CRACC2|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding 0.176 0.168 0.183 0.063 0.278 0.073 1.219 0.636 0.424 0.116 0.469 0.046 0.355 0.376 0.253 5.316 0.054 0.133 0.065 0.045 1.681 0.938 1.083 0.091 0.099 0.095 0.069 0.402 0.298 0.218 0.198 0.071 0.111 0.304 0.266 0.020 0.055 0.314 0.389 0.018 0.071 0.029 1107 chr6 20400773 20405768 + 0 NA promoter-TSS (NM_001243076) promoter-TSS (NM_001243076) -640 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 9.004 5.800 2.643 1.478 6.079 8.950 5.903 1.985 9.494 5.367 10.159 2.659 1.388 2.275 5.010 4.083 1.814 3.434 2.489 6.657 3.826 6.917 1.887 5.856 10.973 8.721 3.455 3.122 3.625 4.604 9.549 2.591 3.723 11.801 6.768 2.448 2.760 11.333 4.763 2.839 1.775 1.211 875 chr20 60795969 60802551 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -3937 NM_007232 11255 Hs.251399 NM_007232 ENSG00000101180 HRH3 GPCR97|HH3R histamine receptor H3 protein-coding 0.097 0.086 0.029 0.057 0.019 0.073 0.182 0.107 0.137 0.022 0.129 0.053 0.061 0.061 0.021 0.031 0.020 0.068 0.086 0.221 0.046 0.069 0.136 0.012 0.053 21.264 0.021 0.055 0.028 0.018 0.038 0.175 0.024 0.047 0.009 189 chr10 135069689 135078143 + 0 NA Intergenic Intergenic -12527 NR_108079 101927671 Hs.741766 NR_108078 ENSG00000166917 MIR202HG - MIR202 host gene ncRNA 1.517 3.368 0.109 2.860 5.092 5.131 6.108 2.571 7.699 3.075 1.172 1.489 2.590 2.713 0.746 5.330 0.555 2.618 0.342 1.162 2.611 3.598 1.409 2.685 6.310 2.507 1.301 0.597 3.201 2.698 2.986 0.866 5.254 5.876 5.817 3.984 0.736 5.454 2.860 3.555 1.199 1.141 1115 chr6 31160828 31173091 + 0 NA intron (NR_026791, intron 1 of 1) intron (NR_026791, intron 1 of 1) 1422 NR_026791 253018 Hs.659818 NR_026791 ENSG00000206344 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA 3.507 2.022 1.351 0.991 3.038 4.224 2.310 0.973 3.320 1.469 2.427 1.385 0.684 1.585 1.372 3.844 0.560 1.293 1.895 0.713 1.726 1.775 0.412 1.815 3.327 2.273 0.820 1.696 3.348 1.207 3.755 1.637 1.146 5.700 3.239 0.579 1.140 3.318 1.435 1.668 0.596 0.407 378 chr13 73725725 73753598 + 0 NA Intergenic AluSz|SINE|Alu 106731 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 1.049 0.192 0.031 0.061 0.110 0.068 0.063 0.106 5.496 1.146 0.344 0.288 0.034 0.208 0.733 0.325 0.168 0.229 0.025 0.015 0.347 0.115 0.045 0.131 0.176 0.035 0.031 0.279 0.118 0.362 0.042 0.090 0.739 0.120 0.033 1.312 0.273 0.067 0.031 0.098 0.012 0.005 335 chr12 58163873 58168542 + 0 NA promoter-TSS (NM_015433) promoter-TSS (NM_015433) -176 NM_206914 25895 Hs.632720 NM_015433 ENSG00000123427 METTL21B FAM119B methyltransferase like 21B protein-coding 3.766 2.180 0.494 1.087 1.876 2.252 2.769 1.448 4.446 3.014 2.860 1.193 1.316 2.438 2.288 1.720 1.043 7.733 1.508 1.424 1.872 2.522 1.817 3.637 3.408 3.035 1.705 1.646 3.509 4.026 5.032 3.624 2.414 3.065 26.338 1.621 2.327 6.547 2.961 1.643 2.528 1.309 973 chr3 172276917 172283611 + 0 NA Intergenic AluSq|SINE|Alu -38967 NR_033994 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 6.181 0.621 0.055 0.373 1.075 6.794 1.351 0.754 1.499 0.447 7.326 1.420 0.351 1.665 2.537 1.650 1.141 0.761 0.059 3.437 2.790 2.067 0.743 0.797 0.342 0.198 0.386 1.379 0.578 0.170 3.140 5.581 0.438 0.177 1.045 4.409 0.283 1.074 0.479 0.069 0.076 712 chr19 36247187 36250859 + 0 NA promoter-TSS (NM_001039887) promoter-TSS (NM_001039887) -21 NM_001039887 148137 Hs.527982 NM_144692 ENSG00000167595 PROSER3 C19orf55 proline and serine rich 3 protein-coding 4.873 5.181 0.827 1.842 3.877 4.589 2.576 0.775 4.929 2.067 1.410 1.193 2.187 1.365 2.072 1.504 1.596 4.761 1.281 1.776 1.747 2.192 3.472 5.408 5.213 3.773 2.008 0.690 2.743 8.292 12.672 3.626 1.570 3.544 2.356 1.101 1.736 4.662 2.981 2.067 1.885 1.097 427 chr14 75915495 75929617 + 0 NA intron (NM_001135049, intron 2 of 3) LTR33|LTR|ERVL 23719 NM_001135049 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 0.949 0.265 2.406 0.097 0.170 0.143 0.129 0.713 0.278 1.409 0.352 0.033 0.106 5.819 0.307 1.279 0.132 0.099 0.108 0.375 0.108 0.339 0.243 1.467 0.307 0.172 0.608 0.262 1.087 0.137 0.034 0.606 0.146 0.085 0.130 1.736 0.206 0.084 0.289 0.069 0.051 232 chr11 65306913 65331471 + 0 NA intron (NM_001164266, intron 8 of 26) intron (NM_001164266, intron 8 of 26) 6507 NM_001164266 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 1.054 2.385 0.620 1.217 2.923 1.277 2.005 0.849 9.104 5.754 3.183 3.323 1.087 1.159 2.897 2.637 0.638 1.769 2.202 0.359 0.833 0.528 1.563 0.801 9.278 0.604 0.391 1.916 1.295 2.413 2.869 0.428 2.382 2.747 2.132 0.677 1.823 2.221 0.830 2.059 0.792 0.831 32 chr1 38464201 38472400 + 0 NA intron (NM_004468, intron 1 of 5) AluSx|SINE|Alu 2887 NM_001243878 2275 Hs.57687 NM_004468 ENSG00000183386 FHL3 SLIM2 four and a half LIM domains 3 protein-coding 2.613 4.522 0.145 1.202 2.527 2.319 2.010 1.691 5.038 2.023 0.990 1.619 0.844 2.207 1.038 5.758 0.278 3.851 0.381 0.714 1.680 1.657 1.254 0.410 4.560 4.441 1.993 1.472 0.587 1.509 2.829 0.153 2.132 2.084 4.069 0.961 0.343 2.282 2.109 2.788 1.461 0.723 707 chr19 18524062 18551907 + 0 NA intron (NM_001009998, intron 1 of 16) intron (NM_001009998, intron 1 of 16) 7838 NM_032627 170463 Hs.515259 NM_032627 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 0.742 1.957 0.642 0.307 1.123 4.205 1.480 0.303 nan 1.356 0.924 0.504 0.598 0.329 1.138 0.638 0.526 0.750 0.890 2.179 0.605 0.446 2.929 2.181 1.568 0.635 0.433 0.295 0.383 2.313 7.563 0.608 0.552 1.554 1.319 0.114 0.473 6.296 1.350 0.561 0.242 0.108 919 chr22 38137306 38151944 + 0 NA intron (NM_007032, intron 1 of 13) L2c|LINE|L2 2384 NM_007032 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 2.590 3.382 0.317 1.871 4.543 3.074 5.793 1.320 7.041 4.079 2.828 3.002 1.753 1.269 4.279 3.980 2.167 1.913 0.386 0.673 1.048 1.048 0.689 2.701 5.353 2.178 1.078 1.625 1.874 3.969 2.502 1.297 2.866 5.733 4.643 1.480 3.723 2.385 2.289 1.931 0.275 0.247 206 chr11 34521146 34526016 + 0 NA intron (NM_198381, intron 2 of 6) intron (NM_198381, intron 2 of 6) 9765 NM_198381 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 0.252 0.581 0.051 0.077 0.085 0.039 0.567 0.173 0.615 0.294 0.771 0.053 0.074 0.558 4.490 0.595 2.136 0.400 0.020 1.048 0.802 0.106 0.501 1.401 0.339 0.368 0.031 14.908 0.580 0.175 0.130 0.555 0.102 0.075 0.176 0.153 0.190 0.274 0.137 5.301 5.265 353 chr12 103342730 103360298 + 0 NA promoter-TSS (NM_004316) promoter-TSS (NM_004316) 62 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 0.062 0.098 0.021 0.011 0.042 0.014 0.058 0.202 0.088 0.074 0.008 0.080 0.012 0.077 0.033 0.010 0.058 3.880 0.004 0.021 0.033 0.073 0.063 0.014 0.009 0.048 0.241 0.093 0.048 0.024 0.042 0.073 0.026 0.007 0.019 0.111 0.013 0.004 0.026 0.014 1257 chr8 81718553 81724499 + 0 NA intron (NM_001033723, intron 2 of 8) AluSz|SINE|Alu 65490 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.267 0.136 5.313 0.033 0.142 0.084 0.321 0.071 0.349 0.095 1.199 0.466 0.040 3.627 0.035 1.210 0.212 0.119 0.070 0.096 0.039 0.093 0.020 0.026 0.257 0.137 0.068 0.082 0.106 0.250 0.158 0.016 0.123 1.207 0.010 0.067 0.035 0.019 0.046 1262 chr8 99994045 100013142 + 0 NA Intergenic Intergenic -21901 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 0.414 0.119 3.144 0.030 0.134 0.046 0.178 0.100 0.311 0.206 0.410 0.062 0.024 0.034 0.666 0.052 0.301 0.078 0.072 0.022 0.015 0.011 0.073 0.050 0.048 0.022 0.028 0.016 0.140 0.090 0.093 0.066 0.254 0.079 0.077 0.083 0.508 0.033 0.073 0.012 0.081 0.021 689 chr19 4865570 4879057 + 0 NA Intergenic AluSx|SINE|Alu -4533 NM_001164194 10226 Hs.140452 NM_005817 ENSG00000105355 PLIN3 M6PRBP1|PP17|TIP47 perilipin 3 protein-coding 0.768 1.383 0.206 1.077 2.180 2.260 1.341 1.253 1.935 0.763 0.692 0.719 0.637 2.163 0.787 2.846 0.559 1.223 0.029 0.452 2.436 2.488 0.800 1.501 8.308 3.318 1.510 1.231 2.217 1.612 3.839 1.523 1.446 2.513 3.188 0.570 2.233 6.756 3.739 1.305 2.064 1.588 352 chr12 96610455 96615106 + 0 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 24620 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 5.982 1.478 0.950 1.791 3.472 0.163 5.760 4.485 7.923 4.247 3.642 2.852 2.842 4.225 3.235 6.503 1.911 2.342 0.021 0.119 5.114 5.839 1.451 0.418 6.697 2.987 1.273 6.051 8.966 3.833 3.368 0.034 0.897 5.736 9.167 1.892 0.606 2.514 2.357 1.721 6.530 7.439 466 chr15 80768645 80787754 + 0 NA intron (NM_014862, intron 5 of 18) L2b|LINE|L2 77086 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 0.381 0.256 0.029 0.070 0.078 0.202 0.053 0.976 1.081 0.118 0.240 0.138 0.340 0.251 0.121 0.090 0.005 1.484 0.052 0.043 0.117 0.102 0.019 0.068 0.456 0.145 0.131 0.061 6.574 0.415 0.034 0.165 0.115 0.030 0.100 0.115 0.065 0.069 0.240 0.595 0.605 0.353 917 chr22 37893582 37946680 + 0 NA Intergenic Intergenic -4921 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 2.321 0.968 0.043 1.151 1.896 0.412 1.625 1.020 3.412 0.812 0.677 1.022 0.659 1.085 1.613 1.725 0.933 0.424 0.462 0.043 0.571 0.385 0.181 0.224 2.256 0.714 0.357 0.841 0.431 1.829 0.944 0.786 0.807 3.171 1.374 0.384 1.121 0.931 1.279 0.844 0.211 0.117 1032 chr5 1342095 1346232 + 0 NA intron (NM_030782, intron 2 of 16) intron (NM_030782, intron 2 of 16) 1022 NM_030782 81037 Hs.444673 NM_030782 ENSG00000049656 CLPTM1L CRR9 CLPTM1 like protein-coding 2.028 2.114 0.404 1.265 5.329 1.887 7.509 1.305 7.844 6.499 12.537 1.152 2.042 1.186 2.866 3.220 1.208 2.278 2.087 2.145 2.564 2.496 2.158 1.916 2.737 5.214 2.877 1.608 1.908 2.526 2.827 2.626 6.127 6.772 2.515 1.261 1.970 2.052 2.270 0.801 1.182 0.797 345 chr12 66211241 66232413 + 0 NA exon (NM_003484, exon 2 of 4) exon (NM_003484, exon 2 of 4) -1073 NR_026825 204010 Hs.558686 NR_026825 ENSG00000241749 RPSAP52 RPSA_17_1251 ribosomal protein SA pseudogene 52 pseudo 4.575 2.923 0.070 0.803 2.205 1.573 2.895 1.682 2.253 1.805 2.052 1.662 2.554 1.752 2.764 2.528 0.021 4.169 0.834 4.353 0.921 1.204 0.053 0.095 4.499 2.046 0.849 1.935 7.823 2.134 3.786 1.143 0.056 1.623 4.642 0.480 0.113 2.795 1.380 2.871 5.642 6.667 411 chr14 50357351 50366879 + 0 NA 3' UTR (NM_001663, exon 2 of 2) 3' UTR (NM_001663, exon 2 of 2) 2379 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 6.397 2.295 4.123 1.074 4.596 3.969 7.043 1.816 5.705 4.430 5.809 2.854 2.484 2.107 4.610 2.017 1.945 2.540 0.826 1.282 5.245 6.664 0.823 2.518 2.792 3.332 1.484 2.559 5.160 2.811 2.341 1.878 3.147 5.144 6.922 1.758 1.851 3.636 3.115 4.114 2.152 2.119 63 chr1 145494363 145509166 + 0 NA TTS (NM_153713) TTS (NM_153713) -5793 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 0.914 1.074 0.510 0.564 1.295 1.165 0.745 0.946 20.929 12.415 3.460 1.066 1.326 0.975 1.206 2.642 0.310 0.833 1.153 0.670 1.376 1.129 0.473 1.592 0.994 1.169 0.669 1.059 0.744 1.034 0.952 0.362 2.003 1.714 1.857 0.843 1.289 1.473 1.338 0.552 0.693 0.515 920 chr22 38170416 38184716 + 0 NA Intergenic Intergenic -23548 NM_005318 3005 Hs.745024 NM_005318 ENSG00000189060 H1F0 H10|H1FV H1 histone family member 0 protein-coding 0.406 0.250 0.117 1.869 3.295 0.091 2.383 1.285 7.305 2.140 0.760 1.623 1.175 0.647 1.152 3.418 0.515 0.479 0.405 0.058 0.632 0.401 0.068 0.083 0.791 0.176 0.135 0.640 0.163 0.337 0.263 0.324 1.329 2.776 1.462 0.992 2.288 0.251 0.712 0.205 0.072 0.108 79 chr1 151761855 151765251 + 0 NA promoter-TSS (NM_006862) promoter-TSS (NM_006862) -543 NM_001083963 11022 Hs.144439 NM_006862 ENSG00000182134 TDRKH TDRD2 tudor and KH domain containing protein-coding 1.878 0.545 0.422 0.697 2.868 0.474 2.935 1.276 18.194 17.546 1.894 0.843 0.846 1.680 1.274 1.721 0.649 0.685 0.931 0.451 1.046 0.571 1.369 0.305 2.002 1.121 0.783 0.498 0.670 1.496 2.364 5.143 4.959 2.493 1.658 0.723 2.584 2.900 1.091 0.405 0.390 0.194 654 chr17 78826629 78836388 + 0 NA intron (NM_001163034, intron 12 of 29) CpG -52076 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 1.705 4.212 0.115 1.087 1.687 2.803 2.177 0.916 1.799 0.481 0.469 2.598 1.902 1.894 0.464 5.334 0.528 2.275 0.915 0.033 2.407 2.270 0.681 1.290 6.785 1.181 0.473 1.083 7.494 0.735 2.495 0.916 2.436 1.682 1.393 0.263 1.415 2.245 1.415 4.415 1.474 1.261 351 chr12 96586736 96594879 + 0 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 2647 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 6.534 3.135 0.107 1.582 4.431 1.858 6.979 3.471 5.571 2.798 3.142 2.409 2.811 4.524 4.114 4.191 1.735 2.932 0.532 0.476 2.511 2.706 1.401 2.269 7.621 8.189 3.066 3.885 12.057 2.960 5.641 1.046 2.441 3.401 7.076 0.974 0.902 4.716 2.216 2.816 9.102 10.222 816 chr2 217232551 217240155 + 0 NA 5' UTR (NM_020814, exon 1 of 4) 5' UTR (NM_020814, exon 1 of 4) 397 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 3.076 1.329 1.253 1.284 1.100 2.451 2.249 0.124 0.053 0.110 1.232 0.994 1.938 0.228 2.590 0.038 0.636 0.144 0.018 2.768 2.872 0.748 0.206 7.199 11.255 3.816 0.899 1.477 0.610 3.550 0.018 0.481 1.890 0.113 0.110 5.002 1.496 1.387 6.022 5.331 590 chr17 37829913 37836504 + 0 NA intron (NM_001291726, intron 2 of 6) intron (NM_001291726, intron 2 of 6) 8502 NM_002686 5409 Hs.1892 NM_002686 ENSG00000141744 PNMT PENT|PNMTase phenylethanolamine N-methyltransferase protein-coding 26.434 0.463 10.666 0.489 0.868 0.163 0.389 0.475 5.934 2.403 7.881 1.043 0.207 0.348 1.757 0.752 0.670 0.379 0.606 0.106 0.199 0.121 0.146 0.108 0.238 0.027 0.048 0.581 0.214 1.140 0.086 0.049 1.175 3.285 0.042 0.574 2.504 0.273 0.132 0.080 0.026 0.030 1330 chr9 140170181 140176714 + 0 NA exon (NM_017723, exon 2 of 2) exon (NM_017723, exon 2 of 2) 1167 NM_017723 54863 Hs.495541 NM_017723 ENSG00000198113 TOR4A C9orf167 torsin family 4 member A protein-coding 2.778 2.414 0.009 1.534 4.525 2.979 4.320 0.840 7.700 4.829 0.205 1.628 1.283 1.621 1.973 1.974 0.014 1.457 0.227 0.021 1.841 2.329 0.211 2.982 6.089 6.112 2.695 0.036 0.031 4.394 7.621 1.647 3.211 3.561 2.957 2.005 0.076 0.203 2.629 2.124 2.927 1.806 599 chr17 39966485 39970775 + 0 NA promoter-TSS (NM_006455) promoter-TSS (NM_006455) -179 NM_006455 10609 Hs.446459 NM_006455 ENSG00000141696 P3H4 LEPREL4|NO55|NOL55|SC65 prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding 2.243 7.385 0.331 0.616 1.940 11.144 4.848 2.049 3.400 2.560 2.065 2.335 1.840 3.774 4.230 4.095 1.136 3.205 2.131 5.492 0.671 0.520 4.704 7.905 1.223 0.544 0.544 1.935 1.001 8.373 5.503 5.595 4.851 1.551 5.169 0.913 1.337 11.435 2.774 1.175 3.221 1.540 293 chr12 10316606 10326223 + 0 NA intron (NM_002543, intron 2 of 5) (CAAAA)n|Simple_repeat|Simple_repeat -1784 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 0.070 0.098 6.505 0.110 0.200 0.078 0.152 0.083 0.364 0.012 0.509 0.074 0.398 0.108 0.062 0.086 0.028 0.045 1.155 0.040 0.844 0.056 0.033 0.064 0.223 0.237 0.071 0.065 0.154 0.096 0.009 0.026 0.899 1.423 0.008 0.031 0.036 0.011 1110 chr6 28317064 28325899 + 0 NA intron (NM_001242894, intron 2 of 6) L2|LINE|L2 491 NM_145909 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 1.078 6.957 1.352 1.180 2.457 5.711 0.506 0.422 2.077 1.487 1.582 1.066 0.642 0.664 1.799 2.837 0.877 3.758 0.753 0.422 2.002 1.834 0.224 8.424 0.854 1.124 0.699 0.219 1.079 1.272 2.601 1.422 1.859 2.577 7.690 1.841 0.479 1.650 1.386 1.721 0.235 0.075 679 chr19 749779 755591 + 0 NA intron (NR_135168, intron 1 of 3) intron (NR_135168, intron 1 of 3) 1572 NM_173481 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 3.687 1.567 8.032 1.251 3.006 10.050 1.890 2.253 6.740 5.360 2.308 1.421 0.811 3.714 3.120 3.546 1.075 1.145 1.010 0.192 4.556 6.750 0.370 7.800 17.218 2.625 1.107 3.448 6.555 8.150 2.512 3.975 4.035 5.868 5.379 2.641 2.821 1.567 3.382 2.700 8.766 7.082 1038 chr5 32584585 32587764 + 0 NA intron (NM_006713, intron 1 of 4) CpG 569 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 homolog, transcriptional regulator protein-coding 3.868 4.744 2.324 3.773 8.815 4.848 4.071 1.694 11.482 10.040 6.549 2.211 2.153 3.109 3.189 4.442 3.144 3.613 2.398 4.399 2.722 3.554 2.203 4.848 3.646 8.188 4.587 1.807 1.733 3.561 4.833 4.323 2.452 14.398 2.974 2.196 3.140 6.578 4.243 2.005 2.758 1.712 976 chr3 181551076 181591915 + 0 NA Intergenic Intergenic -98657 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.206 0.107 0.700 0.260 0.466 0.029 0.161 0.073 3.042 0.743 1.002 0.276 0.037 0.339 0.171 0.317 0.040 0.061 0.054 0.037 0.272 0.136 0.038 0.273 0.104 0.052 0.030 0.421 0.169 0.325 0.072 0.210 0.235 0.274 0.050 0.231 0.223 0.031 0.171 0.060 0.028 0.024 1191 chr7 20251766 20292072 + 0 NA Intergenic Intergenic 14719 NR_134568 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 3.787 0.622 0.716 0.438 1.124 0.209 2.639 1.527 4.527 2.133 3.168 0.942 0.525 1.631 1.791 0.574 0.310 1.931 1.715 0.010 0.198 0.104 0.192 3.749 0.117 0.144 0.093 1.419 2.976 0.087 0.057 0.069 0.463 0.904 0.244 0.649 0.625 0.091 0.200 1.042 0.121 0.037 1123 chr6 33264982 33268690 + 0 NA TTS (NM_172209).2 TTS (NM_172209).2 329 NM_004761 5863 Hs.509622 NM_004761 ENSG00000237441 RGL2 HKE1.5|KE1.5|RAB2L ral guanine nucleotide dissociation stimulator like 2 protein-coding 5.855 7.024 3.501 2.449 7.017 5.361 2.617 1.990 11.935 8.769 8.710 3.210 1.902 1.954 6.039 5.257 2.975 2.178 3.562 5.950 2.987 3.835 1.630 2.658 9.938 9.325 3.453 2.143 8.933 4.039 10.138 4.274 5.256 8.917 5.444 2.252 4.598 10.074 3.276 3.302 2.839 1.456 126 chr1 180133998 180141877 + 0 NA intron (NM_001004128, intron 2 of 12) intron (NM_001004128, intron 2 of 12) 13969 NM_002826 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 1.353 0.574 0.031 1.976 4.732 0.043 0.514 1.536 5.034 1.172 0.993 1.277 0.268 2.955 1.077 1.601 1.756 0.272 0.127 0.053 0.506 0.418 0.152 0.173 0.117 0.185 0.216 1.041 0.241 0.465 0.135 0.745 1.125 2.706 0.457 1.071 1.390 0.218 0.437 0.753 0.058 0.084 118 chr1 164558683 164573785 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 37637 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 0.408 0.879 2.577 0.442 0.821 0.056 0.257 0.014 0.924 0.317 0.798 0.058 0.273 0.125 1.338 0.404 0.765 0.717 0.147 0.017 0.222 0.139 0.035 0.846 0.073 0.028 0.041 0.540 0.165 0.507 0.023 0.326 1.406 1.238 0.031 1.249 2.858 0.078 0.632 0.015 0.032 0.017 494 chr16 11686919 11692903 + 0 NA Intergenic Intergenic -8589 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 1.410 0.624 6.500 1.231 2.513 0.202 1.274 0.963 6.836 2.389 0.663 0.832 0.059 1.178 0.992 1.574 1.633 0.133 0.129 0.046 0.968 0.381 0.545 1.143 0.184 0.091 0.038 0.729 0.094 1.182 0.126 0.514 2.590 4.151 0.110 0.409 0.938 0.203 0.647 0.228 0.019 0.030 99 chr1 155156817 155166565 + 0 NA intron (NM_001204285, intron 2 of 8) intron (NM_001204285, intron 2 of 8) 1015 NM_001018017 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 1.174 2.458 4.268 1.245 3.936 6.790 6.147 2.074 8.299 2.898 5.475 1.426 1.175 3.803 1.205 2.662 1.509 2.065 12.017 1.877 5.625 9.745 2.367 4.128 4.566 1.686 0.979 1.510 1.626 2.465 2.399 5.138 4.028 5.165 5.334 2.861 1.566 10.060 4.768 1.941 0.709 0.281 589 chr17 37782432 37790321 + 0 NA intron (NM_181505, intron 4 of 6) intron (NM_181505, intron 4 of 6) 1625 NM_001242464 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding 4.900 0.244 0.062 0.218 0.697 0.089 0.177 0.214 4.561 1.222 9.137 0.117 0.061 0.167 0.158 0.305 0.025 0.095 0.742 0.052 0.050 0.046 0.084 0.124 0.338 0.053 0.079 0.174 0.139 0.336 0.141 0.040 0.118 0.426 0.024 0.031 0.118 0.679 0.101 0.048 0.044 0.006 1205 chr7 98922449 98929993 + 0 NA intron (NM_006409, intron 1 of 9) MIRb|SINE|MIR 2725 NM_006409 10552 Hs.124126 NM_006409 ENSG00000241685 ARPC1A Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L actin related protein 2/3 complex subunit 1A protein-coding 2.963 3.167 0.932 1.407 3.206 0.864 5.269 1.789 4.631 2.546 3.354 1.610 1.498 3.075 3.986 4.406 0.961 2.928 0.797 0.846 1.751 1.613 1.255 3.107 4.157 2.572 1.130 1.918 5.539 2.486 5.106 0.984 2.300 2.448 4.207 2.740 4.296 2.668 2.638 1.785 1.206 0.890 199 chr11 6338625 6345123 + 0 NA promoter-TSS (NM_145040) promoter-TSS (NM_145040) -134 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 3.887 3.031 0.267 2.018 3.074 0.088 3.383 1.747 0.345 0.175 0.122 1.975 1.127 2.358 0.126 5.548 0.514 1.612 0.266 0.018 3.959 5.621 0.079 0.734 12.192 1.070 0.505 1.085 13.300 0.956 0.165 3.014 1.576 3.359 5.918 0.716 0.242 0.938 5.539 7.991 2.366 1.831 112 chr1 158968499 158992634 + 0 NA intron (NM_001206567, intron 1 of 10) intron (NM_001206567, intron 1 of 10) 884 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 0.270 0.385 0.008 0.524 1.243 0.107 2.384 1.095 0.330 0.299 2.525 0.701 1.792 3.421 0.060 0.807 0.091 1.562 0.087 3.992 3.250 0.023 1.131 0.760 0.690 0.384 0.812 1.364 0.135 0.035 1.170 0.628 0.301 0.721 0.391 0.072 0.102 2.320 0.635 0.026 0.036 1296 chr9 35687328 35692363 + 0 NA 5' UTR (NM_001301227, exon 1 of 9) 5' UTR (NM_001301227, exon 1 of 9) 208 NM_001301226 7169 Hs.300772 NM_003289 ENSG00000198467 TPM2 AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB tropomyosin 2 (beta) protein-coding 2.590 4.514 0.445 1.209 2.057 1.631 1.522 0.686 4.012 1.618 2.614 1.948 1.520 2.444 1.359 4.659 2.576 2.810 2.561 0.688 4.530 4.684 4.348 1.367 6.536 5.216 2.879 1.359 6.226 6.354 8.082 0.502 2.546 1.792 2.884 0.467 0.742 15.458 3.695 4.093 2.608 1.361 1219 chr7 137615174 137653733 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) -3641 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 0.666 0.432 0.789 0.964 1.141 0.078 0.387 0.648 5.652 1.702 3.081 0.377 0.105 0.704 0.739 0.518 0.293 0.428 0.091 0.029 0.675 0.362 0.092 0.675 0.159 0.115 0.080 0.874 0.182 0.435 0.176 1.464 1.706 1.445 0.179 0.448 2.013 0.123 0.359 0.074 0.028 0.015 705 chr19 18432194 18455353 + 0 NA Intergenic Intergenic -7624 NM_001329477 54858 Hs.131776 NM_017712 ENSG00000130517 PGPEP1 PAP-I|PGI|PGP|PGP-I|PGPI|Pcp pyroglutamyl-peptidase I protein-coding 0.875 0.773 0.314 0.350 1.027 1.109 0.930 0.567 nan 0.914 0.987 0.334 0.307 0.540 2.659 0.720 0.517 0.638 0.454 0.300 0.662 0.656 0.759 1.034 1.020 0.916 0.472 0.335 0.520 1.523 1.644 1.002 0.699 1.113 0.906 0.427 0.838 1.414 0.942 0.430 0.251 0.168 566 chr17 9715134 9750315 + 0 NA intron (NM_004246, intron 1 of 12) L1ME4a|LINE|L1 3856 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 0.352 0.573 0.005 0.016 0.057 0.440 0.054 0.399 0.460 0.213 0.142 0.017 0.017 0.512 0.360 0.696 0.165 0.484 0.046 0.016 0.693 0.482 0.058 9.683 0.882 0.245 0.164 0.207 0.185 1.029 0.091 0.020 2.141 0.061 0.024 0.334 0.151 0.100 1.412 0.231 0.249 0.143 935 chr3 12267757 12273949 + 0 NA Intergenic Intergenic -58496 NM_005037 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 0.372 0.513 6.456 0.646 2.031 0.021 3.282 4.155 4.195 1.392 4.527 1.132 0.573 1.571 0.310 2.429 0.106 1.162 0.066 1.483 0.816 0.012 0.052 0.119 0.010 1.445 0.113 0.251 0.127 0.025 0.827 4.748 0.098 0.871 0.924 0.056 0.927 0.605 0.028 0.016 30 chr1 36001430 36006091 + 0 NA intron (NM_024874, intron 2 of 20) L2a|LINE|L2 19277 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR KIAA0319 like protein-coding 0.122 0.199 7.086 0.040 0.148 0.067 0.055 0.318 0.132 0.400 0.093 0.061 0.360 0.260 1.312 0.831 0.208 0.093 0.079 0.092 0.149 0.013 0.033 0.050 0.089 0.122 0.190 0.057 0.137 0.162 0.141 0.075 0.086 0.082 0.049 0.011 913 chr22 30671590 30709592 + 0 NA intron (NM_031937, intron 6 of 8) L2c|LINE|L2 -4975 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 GATSL3 CASTOR1 GATS protein like 3 protein-coding 0.927 0.910 0.366 0.920 1.577 0.327 0.495 0.280 nan 1.722 1.282 0.670 0.320 0.678 1.592 0.802 0.960 0.419 0.140 0.104 0.310 0.195 0.115 0.413 0.493 0.168 0.094 0.258 0.193 0.636 0.404 0.105 1.217 1.619 0.324 0.399 1.068 0.812 1.078 0.444 0.058 0.044 1252 chr8 72739575 72780062 + 0 NA intron (NR_033652, intron 2 of 4) intron (NR_033652, intron 2 of 4) -3087 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 0.131 1.782 0.029 0.286 0.212 2.364 0.126 0.057 0.184 0.142 0.084 0.242 0.265 0.200 0.166 0.669 0.012 3.880 0.031 0.007 1.299 0.760 0.024 1.308 0.342 0.058 0.052 0.025 2.538 0.909 0.309 0.074 0.483 0.082 0.052 0.483 0.045 0.091 0.213 0.354 0.020 0.015 1233 chr8 29367327 29390479 + 0 NA Intergenic Intergenic -170636 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 0.246 1.701 0.003 0.426 0.601 0.653 0.733 1.395 3.432 1.045 0.558 0.954 0.378 0.711 2.078 1.645 0.214 1.759 0.080 0.012 2.244 1.651 0.016 1.380 1.070 0.445 0.226 0.451 0.843 1.576 0.034 3.109 3.638 0.485 0.188 0.949 0.445 0.813 0.616 1.442 0.071 0.057 88 chr1 154528275 154533373 + 0 NA exon (NM_017582, exon 1 of 13) exon (NM_017582, exon 1 of 13) 296 NM_017582 55585 Hs.607928 NM_017582 ENSG00000160714 UBE2Q1 GTAP|NICE-5|PRO3094|UBE2Q ubiquitin conjugating enzyme E2 Q1 protein-coding 3.212 2.668 1.168 0.968 3.813 4.191 2.635 1.235 5.407 3.392 3.284 1.493 1.970 2.983 2.145 2.602 1.254 2.168 3.581 3.180 2.596 2.880 3.188 4.643 4.569 3.947 1.755 1.807 1.721 3.807 3.213 11.363 6.551 3.329 3.308 2.035 3.415 10.908 2.965 1.440 1.999 1.228 1320 chr9 130299065 130349879 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 6924 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 2.427 2.916 1.281 1.791 4.967 1.375 5.545 1.442 9.262 4.919 3.000 2.438 1.727 1.859 1.785 2.949 1.711 1.287 0.382 0.052 2.740 2.841 0.486 2.618 2.902 2.807 1.190 2.501 3.897 2.605 4.675 0.262 2.472 6.229 2.270 1.155 3.514 1.276 2.236 2.223 2.635 2.087 551 chr17 4378057 4426440 + 0 NA 5' UTR (NM_001124758, exon 1 of 13) 5' UTR (NM_001124758, exon 1 of 13) 110 NM_001124758 124976 Hs.22824 NM_001124758 ENSG00000183018 SPNS2 - sphingolipid transporter 2 protein-coding 1.333 0.069 0.299 0.592 1.212 0.086 0.523 0.369 3.793 1.311 1.730 0.145 0.058 2.227 3.767 0.906 1.454 0.134 0.335 0.026 0.324 0.166 0.053 0.109 0.221 0.231 0.137 0.874 0.124 0.357 0.104 0.755 0.936 1.179 0.939 0.399 3.857 0.320 0.401 0.022 0.176 0.111 1200 chr7 55431659 55435688 + 0 NA 5' UTR (NM_018697, exon 1 of 9) 5' UTR (NM_018697, exon 1 of 9) 532 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 6.906 4.323 3.582 1.183 2.722 2.968 7.385 1.309 10.409 9.661 45.549 1.047 1.817 2.381 10.662 3.190 2.159 3.422 3.892 2.789 3.068 4.630 2.268 1.186 5.102 3.053 1.562 19.609 4.310 4.199 4.706 3.446 2.749 4.462 6.965 2.459 3.859 6.365 6.486 2.472 2.444 1.937 933 chr3 11264398 11268801 + 0 NA intron (NM_001098212, intron 1 of 1) intron (NM_001098212, intron 1 of 1) -1070 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 1.679 2.805 1.280 3.011 2.893 6.363 2.566 4.494 3.613 1.457 1.491 1.580 2.677 1.788 2.481 0.820 3.481 0.969 0.031 1.650 1.878 0.033 1.728 5.145 7.809 2.598 1.730 4.719 1.296 0.964 1.218 2.271 4.003 3.765 1.193 0.281 0.527 3.484 2.814 2.576 2.299 192 chr11 504308 508534 + 0 NA intron (NM_203387, intron 1 of 10) CpG 400 NM_203384 6050 Hs.530687 NM_002939 ENSG00000023191 RNH1 RAI|RNH ribonuclease/angiogenin inhibitor 1 protein-coding 3.674 5.136 1.713 0.942 4.681 2.780 3.682 1.569 7.075 5.565 4.524 1.212 1.908 1.840 2.458 5.158 0.917 2.443 1.764 2.928 2.555 4.069 3.864 2.907 6.453 7.254 3.106 1.658 4.053 3.872 4.308 3.565 2.383 9.298 6.133 2.146 2.302 7.176 3.282 2.472 2.875 2.021 197 chr11 1843754 1860634 + 0 NA Intergenic Intergenic -3346 NM_001290333 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 5.950 0.728 1.475 1.091 2.239 0.191 2.406 2.783 10.432 3.091 5.947 2.763 1.644 2.081 1.218 6.972 1.277 1.624 0.102 0.033 1.054 0.788 0.119 0.340 0.253 0.125 0.142 2.174 2.858 0.500 0.076 0.621 0.860 4.852 2.553 1.219 2.228 0.517 0.878 2.963 0.126 0.069 607 chr17 41432820 41448730 + 0 NA Intergenic Intergenic 25491 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 3.823 5.505 1.444 1.865 3.893 2.541 2.836 1.933 7.765 5.591 2.200 1.735 2.594 2.541 2.921 4.274 1.005 2.041 0.917 0.887 2.218 2.717 0.926 3.739 5.423 2.701 1.207 2.108 4.972 4.674 1.356 1.486 2.154 5.307 4.902 1.694 1.325 3.161 3.110 2.328 1.984 1.409 1084 chr5 148924236 148945013 + 0 NA Intergenic AluSg|SINE|Alu -3509 NM_001025105 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 2.318 1.823 1.354 1.181 2.406 1.933 2.073 1.655 7.993 5.270 2.908 1.766 2.595 2.517 2.707 3.825 1.617 2.156 0.639 0.633 3.692 3.667 0.684 3.094 2.035 1.899 1.009 2.163 3.777 1.665 4.273 1.565 2.411 2.987 5.476 1.337 1.860 2.123 1.859 2.048 3.116 2.561 9 chr1 6658842 6675877 + 0 NA Intergenic AluSx1|SINE|Alu -4401 NM_014851 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 4.283 2.543 1.663 0.734 2.601 0.916 3.169 1.033 nan 1.445 1.132 0.849 0.639 1.535 1.222 1.749 1.153 2.042 0.678 2.525 1.869 2.067 1.988 1.511 2.279 2.509 1.149 0.456 4.148 1.988 4.324 1.362 1.303 3.663 1.956 0.960 0.841 4.166 0.886 1.543 0.984 0.733 477 chr15 96855337 96906852 + 0 NA 3' UTR (NM_021005, exon 3 of 3) 3' UTR (NM_021005, exon 3 of 3) 4525 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 8.144 1.136 2.807 0.575 1.399 2.730 2.223 1.201 2.966 1.495 1.344 0.949 0.859 1.460 1.601 1.987 0.347 2.156 0.618 1.166 1.470 1.505 1.369 2.043 2.137 1.623 0.674 0.724 12.397 2.601 1.743 2.435 1.932 0.955 1.347 1.133 2.135 1.535 1.416 4.828 4.699 4.448 886 chr21 17101477 17104105 + 0 NA intron (NM_013396, intron 1 of 23) CpG 447 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 4.054 2.034 5.627 0.798 4.871 2.623 4.037 1.481 8.959 6.602 5.323 0.735 1.486 2.184 4.879 2.676 1.914 0.773 2.070 1.628 1.936 3.274 3.087 1.226 10.186 6.035 8.750 2.193 4.339 4.829 2.404 3.696 6.505 6.528 1.212 2.717 5.255 1.500 1.205 0.701 0.616 1012 chr4 129379901 129390711 + 0 NA intron (NR_125882, intron 1 of 8) intron (NR_125882, intron 1 of 8) 36135 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 0.194 0.279 0.006 0.124 0.137 0.408 0.045 0.078 0.366 0.060 0.125 0.146 0.197 0.096 0.133 0.542 0.018 1.152 0.028 0.038 0.488 0.193 0.049 0.315 0.112 0.056 0.064 0.050 0.998 0.485 0.066 3.008 0.272 0.060 0.042 0.171 0.178 0.027 0.195 0.028 0.011 0.014 1179 chr7 5587477 5611068 + 0 NA Intergenic MIR3|SINE|MIR -29040 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 3.383 3.396 1.486 0.698 1.147 3.887 2.474 0.989 nan 1.618 1.768 0.998 0.943 1.288 2.111 1.383 1.093 2.255 0.182 1.556 2.131 2.249 1.742 3.486 3.907 2.109 1.041 0.848 1.923 3.689 3.508 0.850 2.185 2.197 2.355 2.045 1.682 4.863 1.430 1.926 0.724 0.402 678 chr18 55095670 55114970 + 0 NA intron (NM_004852, intron 1 of 1) CpG 2403 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 7.066 0.124 0.024 0.020 0.039 0.041 0.043 0.022 0.302 0.154 0.055 0.038 0.024 0.028 1.161 0.096 0.050 0.159 4.767 0.021 0.014 0.011 0.077 0.483 0.181 0.041 0.084 0.012 0.110 0.818 0.113 2.475 0.919 0.021 0.053 0.476 0.099 0.332 0.115 0.071 0.039 0.026 464 chr15 76725393 76733633 + 0 NA intron (NM_001145923, intron 25 of 31) HAL1|LINE|L1 100448 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 0.609 0.104 3.312 0.064 0.115 0.125 0.128 0.171 0.071 0.182 0.071 0.014 0.066 0.350 0.069 0.192 0.034 0.024 0.034 0.042 0.604 0.077 0.101 0.632 0.335 0.055 0.157 0.093 0.086 0.029 0.133 0.111 0.053 0.147 0.157 0.121 0.039 0.009 0.063 0.043 656 chr17 79624771 79635189 + 0 NA Intergenic Intergenic 3196 NR_130939 339229 Hs.405942 NM_001039842 ENSG00000204237 OXLD1 C17orf90 oxidoreductase like domain containing 1 protein-coding 1.617 2.127 0.352 1.999 3.851 3.527 1.810 0.798 4.524 2.822 2.464 1.349 0.876 1.645 1.616 3.016 0.839 1.368 0.623 0.957 1.442 1.505 1.184 2.649 2.412 1.503 0.719 0.866 1.412 2.235 2.421 0.840 5.662 5.530 1.797 1.622 2.521 3.643 1.387 1.208 0.973 0.440 884 chr21 16422714 16439363 + 0 NA intron (NM_003489, intron 1 of 3) intron (NM_003489, intron 1 of 3) 6088 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 4.549 1.048 1.614 0.968 2.931 1.795 3.241 1.838 4.285 2.966 1.983 1.388 1.381 3.188 3.046 2.488 0.805 0.843 0.159 1.410 1.204 0.759 4.001 2.990 3.244 1.645 3.190 1.170 3.222 1.781 1.090 3.688 1.122 2.559 0.780 1.841 0.778 1.725 0.634 0.204 0.123 1281 chr8 134216379 134266066 + 0 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 37940 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 0.072 0.339 0.269 0.297 0.472 0.145 0.319 0.399 5.736 0.673 1.231 0.544 0.399 0.947 0.580 0.867 0.514 0.113 0.812 0.034 0.195 0.112 0.090 0.068 0.367 0.151 0.136 0.155 0.664 0.299 0.053 0.269 1.433 1.055 0.572 0.116 1.915 0.290 0.092 0.185 1.307 1.358 1120 chr6 31780349 31806676 + 0 NA Intergenic Intergenic -2000 NM_005346 3304 Hs.274402 NM_005346 ENSG00000204388 HSPA1B HSP70-1B|HSP70-2|HSP70.2 heat shock protein family A (Hsp70) member 1B protein-coding 4.280 4.101 1.882 1.037 3.771 3.175 1.979 1.858 4.214 2.335 3.928 1.653 1.029 1.714 5.014 5.250 1.512 1.987 1.054 2.171 3.051 2.985 0.715 3.723 5.724 3.257 1.848 1.652 4.569 2.639 5.934 3.703 3.115 3.537 4.163 1.743 4.025 5.098 2.734 1.834 1.768 1.280 495 chr16 11701295 11736995 + 0 NA Intergenic AluJb|SINE|Alu -37823 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 1.392 0.793 1.048 0.799 1.501 1.389 1.235 1.145 4.638 1.622 0.846 0.848 0.086 1.304 1.728 1.923 2.882 0.385 0.070 0.070 1.642 1.218 1.432 2.868 0.545 0.148 0.088 0.758 0.232 1.826 0.115 1.320 2.615 2.191 0.322 0.782 1.569 0.259 1.435 0.935 0.027 0.014 665 chr18 982482 1004872 + 0 NA Intergenic Intergenic 88480 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 0.087 0.322 0.011 0.435 0.453 0.050 0.081 0.033 0.112 0.079 0.140 0.081 0.016 0.068 0.247 0.067 0.021 2.690 0.973 0.012 0.208 0.094 0.079 0.632 0.130 0.210 0.161 0.089 0.299 0.022 0.101 0.035 0.122 0.196 0.012 0.356 0.168 0.034 0.191 0.020 0.013 0.002 364 chr12 125021588 125037167 + 0 NA intron (NM_001077261, intron 1 of 47) MIRb|SINE|MIR 22633 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.249 0.305 0.357 0.392 1.035 0.275 0.082 0.311 1.868 0.476 0.260 0.263 0.038 0.274 0.398 2.039 0.432 0.677 0.064 0.134 0.988 0.732 0.451 0.364 0.201 0.193 0.130 0.163 0.212 0.758 3.173 0.020 0.201 1.881 0.209 0.203 0.658 1.259 0.117 0.108 0.052 0.020 798 chr2 157185329 157204085 + 0 NA Intergenic Intergenic -5420 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 2.811 2.722 0.575 0.841 2.067 6.266 3.143 0.975 6.591 4.025 3.446 1.214 0.736 2.191 0.810 1.642 0.588 1.664 2.250 1.678 1.475 1.727 1.365 4.852 2.314 1.740 0.708 1.571 1.125 3.613 3.711 2.625 4.804 3.917 2.944 2.302 2.641 4.945 1.001 1.315 0.614 0.380 825 chr2 235269060 235282703 + 0 NA Intergenic Intergenic 129812 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 0.190 0.118 1.771 1.363 1.765 0.435 0.120 0.290 3.389 0.665 2.622 1.983 0.885 0.264 4.281 3.335 1.293 0.334 0.215 0.162 1.924 1.225 0.103 1.305 0.108 0.124 0.035 0.930 0.287 4.429 0.623 0.922 1.326 1.505 1.151 0.871 1.979 0.498 0.503 0.155 1.786 1.836 622 chr17 46547280 46612452 + 0 NA Intergenic Intergenic 28406 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 0.292 0.658 0.065 0.562 0.758 0.056 0.117 1.200 nan 1.409 0.853 0.319 1.363 0.907 0.615 2.322 0.067 0.887 0.118 0.139 1.445 0.885 0.079 0.104 2.402 0.943 0.544 0.391 3.193 0.894 1.543 0.141 0.445 0.539 1.207 0.161 0.975 0.229 0.334 1.323 3.209 2.664 1128 chr6 34854029 34858574 + 0 NA promoter-TSS (NM_005643) promoter-TSS (NM_005643) -453 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 5.354 2.823 0.899 0.840 3.762 1.356 2.103 1.547 4.318 3.360 4.173 1.521 0.674 1.326 4.118 4.263 0.670 1.628 1.140 1.374 1.916 1.397 0.742 1.322 2.338 2.157 1.708 0.980 1.349 2.078 3.976 2.640 1.863 9.397 3.529 0.754 1.607 4.047 1.655 1.212 0.786 0.390 309 chr12 29300233 29303510 + 0 NA promoter-TSS (NM_001271783) promoter-TSS (NM_001271783) -65 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 5.071 3.499 0.093 0.059 0.118 0.039 0.060 1.270 4.935 2.337 0.029 0.044 10.406 0.034 2.957 0.174 0.262 1.300 0.060 0.021 2.242 0.541 3.455 2.919 1.212 0.972 0.169 0.853 6.076 0.049 0.021 0.085 0.085 0.149 0.125 2.271 0.139 0.053 693 chr19 10303753 10326161 + 0 NA Intergenic AluSx|SINE|Alu -9146 NM_001130823 1786 Hs.202672 NM_001379 ENSG00000130816 DNMT1 ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI DNA methyltransferase 1 protein-coding 1.542 0.600 0.454 0.727 1.757 0.970 1.551 0.686 nan 0.978 2.686 0.626 0.534 1.054 1.962 0.890 0.728 0.378 0.222 0.413 1.391 1.105 0.454 0.579 1.129 0.956 0.282 2.129 1.042 0.403 1.076 0.490 0.441 3.280 0.892 0.522 0.387 1.125 1.659 0.488 0.357 0.267 661 chr17 79878824 79887378 + 0 NA intron (NM_002359, intron 1 of 2) intron (NM_002359, intron 1 of 2) -1657 NM_032711 4097 Hs.252229 NM_002359 ENSG00000197063 MAFG hMAF MAF bZIP transcription factor G protein-coding 2.157 9.677 0.421 1.392 4.391 10.723 1.476 0.900 5.159 3.507 1.709 1.002 1.643 2.276 2.984 3.694 1.078 3.469 1.365 1.506 3.612 5.017 2.609 8.694 7.892 3.593 1.500 0.997 8.086 8.808 4.620 2.448 4.787 5.476 2.618 4.389 2.978 5.813 1.359 3.281 1.845 0.931 564 chr17 8088365 8105120 + 0 NA Intergenic AluJr|SINE|Alu -3178 NM_017622 54785 Hs.129563 NM_017622 ENSG00000196544 BORCS6 C17orf59|PRO2472 BLOC-1 related complex subunit 6 protein-coding 0.944 1.485 3.859 0.649 1.890 1.714 0.934 0.235 2.218 1.376 1.308 0.918 0.472 0.645 0.737 0.906 0.444 0.981 0.728 0.406 0.461 0.472 0.463 1.301 2.604 0.627 0.422 0.543 1.060 3.561 3.349 0.811 0.907 2.305 2.926 0.367 0.670 3.360 1.771 0.682 0.596 0.425 1195 chr7 27202504 27221106 + 0 NA TTS (NR_046609) TTS (NR_046609) 2150 NM_018951 3206 Hs.110637 NM_018951 ENSG00000253293 HOXA10 HOX1|HOX1.8|HOX1H|PL homeobox A10 protein-coding 1.242 0.078 2.869 0.297 0.437 0.044 0.132 0.009 0.533 0.254 0.362 0.047 0.114 0.040 0.693 0.169 0.686 0.983 0.129 7.211 0.314 0.178 0.717 2.792 4.893 0.201 0.105 0.371 0.328 1.046 1.722 0.314 0.210 0.670 1.867 0.098 0.515 1.032 0.378 0.045 4.591 3.811 778 chr2 68946373 68952369 + 0 NA Intergenic Intergenic -12542 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 0.096 0.066 0.251 0.229 0.074 0.066 0.052 0.752 0.191 0.069 0.578 0.059 0.201 0.100 1.739 0.154 0.050 1.138 0.702 0.012 0.115 0.122 0.181 0.103 0.076 0.283 0.122 0.036 6.551 0.168 0.460 0.046 0.471 0.027 0.106 0.106 0.330 0.264 0.185 961 chr3 138632062 138642915 + 0 NA Intergenic Intergenic 25374 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 0.983 0.659 0.075 0.715 1.080 0.920 1.711 0.904 1.960 1.184 2.161 1.099 1.025 1.146 1.100 3.767 1.401 1.348 0.315 0.217 2.272 1.829 0.409 0.679 1.628 0.754 0.515 1.435 1.872 0.906 1.746 0.378 2.119 1.269 4.845 0.441 0.841 1.514 2.262 1.157 0.488 0.441 1287 chr8 145043990 145051949 + 0 NA promoter-TSS (NM_201378) promoter-TSS (NM_201378) -272 NM_201378 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 6.218 4.945 0.265 0.815 2.694 1.347 2.765 1.187 4.686 3.128 1.638 1.778 1.294 1.826 2.684 2.268 2.716 1.452 1.123 0.714 1.766 1.620 1.414 0.849 2.759 1.872 1.326 0.270 2.539 3.790 4.789 1.466 1.378 2.624 1.298 0.693 2.549 3.724 0.350 1.131 0.716 0.340 1055 chr5 57110613 57140105 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 69630 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 1.449 0.453 0.059 0.375 0.771 0.079 0.733 2.459 0.383 0.154 0.365 1.512 0.412 0.995 1.175 1.605 0.935 0.893 0.020 0.005 1.139 0.653 0.231 1.326 2.639 2.418 1.184 0.454 6.191 0.558 0.275 0.179 0.166 0.465 0.154 0.679 0.360 0.251 0.742 0.861 5.169 5.268 158 chr10 25006977 25014658 + 0 NA exon (NM_020824, exon 2 of 26) exon (NM_020824, exon 2 of 26) 1780 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 3.936 5.896 2.058 1.060 3.730 2.774 5.226 1.388 1.960 1.432 1.584 0.573 1.638 2.010 2.587 2.303 1.717 3.027 0.302 1.935 2.143 2.940 2.342 2.353 1.855 3.236 1.632 2.111 2.287 5.847 3.335 4.199 5.678 3.391 2.441 2.714 2.026 3.758 2.584 2.287 2.526 1.321 187 chr10 126832253 126852263 + 0 NA intron (NM_001290214, intron 1 of 10) intron (NM_001290214, intron 1 of 10) 5429 NM_001290215 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 2.360 3.350 0.900 0.807 3.409 1.444 3.972 1.297 9.026 6.063 2.953 0.542 0.823 2.666 1.711 4.368 1.128 1.494 2.516 1.782 1.965 2.275 1.297 2.642 3.614 1.805 0.833 1.445 1.402 3.544 1.646 2.208 3.169 5.913 4.127 2.558 1.088 2.185 1.739 1.317 0.400 0.237 1181 chr7 12745025 12781423 + 0 NA Intergenic MIR|SINE|MIR 36313 NM_001195396 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.406 0.459 0.639 0.288 0.523 0.045 0.498 0.334 4.144 1.623 0.785 0.818 0.681 0.431 0.241 0.717 0.132 1.625 0.066 4.376 1.381 0.749 0.056 1.380 0.468 0.071 0.052 0.150 1.009 1.064 0.366 0.071 0.499 0.419 0.699 0.570 0.169 0.079 0.797 0.405 0.024 0.009 1017 chr4 129729489 129735152 + 0 NA promoter-TSS (NM_001287441) promoter-TSS (NM_001287441) -105 NM_001287442 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 5.699 5.575 1.630 0.624 2.933 5.343 5.854 1.999 4.264 2.444 2.214 2.032 2.049 1.671 2.012 3.589 1.706 3.456 1.530 4.429 3.014 4.348 2.250 5.765 6.082 4.191 1.819 1.421 8.011 5.601 4.325 8.165 2.661 5.029 5.394 1.175 1.524 3.538 4.113 3.301 3.031 2.064 145 chr1 234733811 234770281 + 0 NA Intergenic Intergenic -6775 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 4.470 4.412 0.976 0.901 2.281 2.325 4.072 2.451 6.411 3.915 4.926 1.713 1.162 3.376 3.529 2.369 1.169 3.130 1.450 2.846 2.845 3.091 0.899 3.416 3.610 1.366 0.711 2.270 8.392 3.837 2.133 4.288 4.785 2.864 3.781 1.361 1.954 2.843 2.401 1.973 2.927 2.567 1117 chr6 31544323 31551018 + 0 NA TTS (NM_009588) TTS (NM_009588) 2532 NM_009588 4050 Hs.376208 NM_002341 ENSG00000227507 LTB TNFC|TNFSF3|TNLG1C|p33 lymphotoxin beta protein-coding 0.268 0.945 0.900 0.934 1.407 3.039 0.173 1.249 1.043 0.432 0.244 0.087 0.317 1.861 0.215 0.858 0.091 0.385 0.249 0.147 0.370 0.194 0.262 0.229 6.460 6.795 2.741 0.057 0.428 0.849 2.459 0.590 0.419 0.160 0.621 0.092 0.531 5.317 0.295 0.175 0.103 0.038 384 chr13 74264883 74296257 + 0 NA intron (NM_007249, intron 7 of 7) intron (NM_007249, intron 7 of 7) 142189 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.719 0.137 0.045 0.060 0.138 0.020 0.104 0.080 6.491 2.072 1.016 0.116 0.030 0.160 0.236 0.132 0.091 0.103 0.054 0.005 0.141 0.053 0.031 0.050 0.126 0.044 0.018 0.106 0.127 0.231 0.052 0.116 0.606 0.092 0.027 1.002 0.483 0.035 0.055 0.061 0.015 0.007 312 chr12 46119385 46127475 + 0 NA promoter-TSS (NM_152641) promoter-TSS (NM_152641) -62 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|p200 AT-rich interaction domain 2 protein-coding 4.584 4.736 6.351 2.002 6.466 4.431 5.891 2.308 8.588 7.120 6.986 2.114 2.202 2.845 4.733 3.634 2.279 2.258 2.417 3.788 3.099 4.107 2.822 5.606 5.878 6.012 2.576 2.475 6.929 6.168 12.376 4.023 4.435 6.517 6.474 1.905 4.593 7.055 2.801 2.784 3.764 2.758 995 chr4 26319726 26333574 + 0 NA intron (NM_015874, intron 1 of 10) intron (NM_015874, intron 1 of 10) 4221 NM_203284 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 2.258 1.456 0.636 1.589 4.682 1.267 1.962 0.991 2.301 1.379 1.109 1.139 0.980 1.147 1.056 2.875 0.551 0.703 0.486 0.711 0.785 0.792 0.670 0.666 3.126 1.954 0.956 1.466 2.117 0.935 2.405 0.841 0.674 4.246 3.208 0.667 0.681 1.908 1.312 1.042 1.119 0.689 1085 chr5 154132582 154137510 + 0 NA intron (NM_015315, intron 1 of 18) CpG 42584 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 7.195 6.152 3.989 1.502 5.036 6.329 5.649 2.388 9.948 8.501 5.494 1.807 3.562 5.221 5.324 6.188 3.042 3.227 1.639 3.711 4.900 7.395 5.412 7.761 8.022 7.252 2.997 3.387 6.752 7.357 9.320 5.214 6.291 6.403 7.212 4.670 3.621 8.821 4.717 3.652 4.966 2.911 522 chr16 57306875 57319392 + 0 NA intron (NM_015993, intron 1 of 3) MIRb|SINE|MIR 5451 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 0.243 0.567 0.104 0.366 0.872 7.932 1.427 0.952 2.607 1.215 0.634 0.942 0.603 1.747 0.587 3.177 0.069 0.503 0.104 0.099 1.663 0.819 0.317 0.267 1.677 0.751 0.559 1.179 0.439 0.995 0.720 0.433 1.850 2.241 5.862 0.432 0.196 0.793 0.788 0.954 0.249 0.110 1278 chr8 128793191 128989254 + 0 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 69747 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 1.432 1.700 0.338 0.708 1.650 2.781 1.131 0.928 4.967 2.361 0.783 1.001 1.678 0.868 1.256 3.094 1.063 38.970 0.142 0.167 1.605 1.209 1.064 9.256 3.740 2.912 1.185 1.191 2.376 2.230 2.810 7.013 2.164 2.434 9.333 0.436 1.335 5.960 12.828 0.895 1.743 1.273 288 chr12 7045985 7057159 + 0 NA TTS (NM_001940) TTS (NM_001940) -1029 NM_001301836 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 3.117 2.131 1.043 0.645 2.257 3.388 2.508 0.819 7.668 4.309 2.465 0.754 0.614 1.710 2.944 1.160 0.735 1.079 2.108 1.037 1.502 1.314 0.708 1.489 2.043 1.118 0.482 1.279 2.557 4.354 3.817 1.077 1.635 2.394 1.911 1.282 1.455 6.340 1.202 0.564 1.103 0.770 235 chr11 65404180 65421403 + 0 NA intron (NM_153253, intron 5 of 15) intron (NM_153253, intron 5 of 15) -3872 NR_039709 100616284 NR_039709 ENSG00000265874 MIR4489 mir-4489 microRNA 4489 ncRNA 1.180 1.781 0.621 1.210 2.842 2.079 0.671 0.536 3.549 1.906 1.367 0.763 0.513 1.518 1.311 1.080 0.364 0.586 0.772 0.250 0.795 0.608 0.911 0.559 2.866 0.878 0.503 0.648 0.854 1.642 2.031 0.462 1.991 1.676 1.264 0.781 1.445 2.078 0.769 0.679 0.344 0.203 350 chr12 96016666 96032363 + 0 NA Intergenic Intergenic -18517 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 3.389 0.235 0.008 0.407 0.718 0.546 0.247 0.331 0.959 0.235 0.226 0.769 0.090 0.458 0.982 1.285 1.398 1.139 0.217 0.035 0.959 0.545 0.169 0.754 0.436 0.276 0.195 0.214 0.362 1.923 0.343 0.473 1.350 0.989 0.294 0.664 1.582 0.205 0.507 0.214 0.227 0.116 555 chr17 6914292 6919480 + 0 NA intron (NR_037715, intron 2 of 3) intron (NR_037715, intron 2 of 3) 1150 NM_001004333 440400 Hs.632232 NM_001004333 ENSG00000219200 RNASEK - ribonuclease K protein-coding 2.814 3.299 2.927 2.503 7.004 4.867 3.540 1.323 6.664 4.855 5.297 1.200 1.962 3.612 5.215 3.183 1.693 3.007 3.050 2.797 2.239 2.901 1.864 5.706 11.670 4.931 2.058 4.721 5.576 7.058 6.643 3.295 2.597 10.593 8.276 3.229 2.475 8.596 5.760 3.366 4.013 2.979 314 chr12 50782339 50796931 + 0 NA intron (NM_001145475, intron 1 of 7) AluSp|SINE|Alu 770 NM_001145475 121006 Hs.133187 NM_001145475 ENSG00000185958 FAM186A - family with sequence similarity 186 member A protein-coding 1.635 1.354 1.344 0.937 2.149 0.942 1.178 1.636 2.404 1.290 1.202 0.652 0.529 1.391 1.810 1.725 0.433 0.966 0.302 0.451 2.082 1.192 0.943 1.314 4.286 5.364 2.475 0.835 1.329 1.303 1.382 0.929 1.457 1.316 1.206 0.477 0.710 1.299 1.946 0.501 0.891 0.593 1039 chr5 33309578 33317767 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -127130 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 0.465 0.401 0.007 4.201 6.128 0.130 4.613 2.353 3.646 1.069 1.344 3.329 1.383 3.093 0.294 2.415 0.122 0.374 0.086 0.034 0.160 0.044 0.009 0.157 0.374 0.096 0.124 0.138 0.171 0.109 0.017 0.145 0.390 3.608 0.437 0.555 0.375 0.093 3.461 0.305 0.028 0.044 952 chr3 71097835 71122884 + 0 NA intron (NM_032682, intron 7 of 20) intron (NM_032682, intron 7 of 20) 3715 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.733 1.169 0.478 0.886 1.713 0.040 0.879 0.454 5.703 3.729 0.596 0.729 0.774 1.925 0.065 1.314 0.167 0.692 0.242 0.044 0.644 0.543 0.009 0.414 0.463 0.453 0.273 0.232 0.546 0.286 0.131 0.579 0.432 0.973 1.354 0.666 0.478 0.171 1.155 1.193 0.166 0.097 708 chr19 19474931 19499653 + 0 NA Intergenic AluY|SINE|Alu -9350 NM_017660 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 1.031 0.887 0.940 0.772 2.066 0.343 1.753 0.998 nan 1.687 1.747 0.550 0.226 1.026 1.772 0.936 1.080 0.599 0.366 0.129 1.889 1.304 0.556 1.085 0.750 1.446 0.752 1.041 0.328 1.324 0.846 0.644 2.061 3.010 0.801 1.062 1.586 0.875 1.638 0.564 0.142 0.084 1089 chr5 172183913 172236278 + 0 NA Intergenic L1MB7|LINE|L1 -11892 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 1.521 1.110 0.446 0.679 1.152 0.981 2.053 1.261 3.064 1.096 0.702 0.801 0.899 1.883 0.939 1.611 0.476 1.174 0.294 0.173 2.431 1.592 0.536 1.314 1.318 0.883 0.530 0.658 1.490 1.800 1.509 2.120 2.376 2.384 2.446 1.101 1.670 0.698 0.859 0.491 1.206 0.901 602 chr17 40530817 40546563 + 0 NA intron (NM_139276, intron 1 of 23) FLAM_A|SINE|Alu 1715 NM_213662 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 1.138 1.100 0.442 0.601 1.653 3.392 0.913 0.387 nan 0.766 1.515 0.279 0.831 1.708 0.753 1.062 0.695 0.475 0.350 0.255 1.617 1.292 0.822 0.600 2.031 0.738 0.370 0.511 1.025 1.779 0.763 1.167 1.158 1.630 0.588 0.864 1.458 1.793 0.767 0.401 0.311 0.149 938 chr3 23985847 23989843 + 0 NA intron (NM_001145425, intron 1 of 7) CpG 233 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 2.999 5.458 1.934 0.852 3.236 1.914 6.134 1.299 4.828 2.729 2.043 0.576 1.108 1.157 1.901 2.751 2.447 3.290 1.230 0.970 1.332 1.391 1.945 5.043 2.281 3.588 2.145 1.193 4.589 5.049 3.582 1.949 2.557 8.703 4.087 1.739 1.806 3.226 2.659 1.753 5.354 4.492 228 chr11 64772053 64783054 + 0 NA Intergenic AluSx|SINE|Alu -4032 NR_037650 100528018 Hs.80132 NR_037650 ENSG00000273003 ARL2-SNX15 - ARL2-SNX15 readthrough (NMD candidate) ncRNA 2.403 2.879 0.283 1.050 1.776 2.550 2.445 2.497 2.613 1.721 1.195 1.859 1.542 2.122 1.777 3.872 0.735 0.764 0.781 0.861 2.073 2.323 1.714 1.019 5.873 5.992 2.607 1.648 6.021 2.637 3.189 0.656 0.981 2.344 2.993 1.160 0.836 2.872 1.562 1.332 1.344 1.149 1338 chrX 103553765 103588378 + 0 NA Intergenic AluSx|SINE|Alu -71472 NM_153448 80712 Hs.223782 NM_153448 ENSG00000123576 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 0.289 0.411 0.014 0.843 0.926 0.122 1.019 1.467 0.710 0.211 0.362 1.211 1.148 0.468 2.214 4.356 0.116 0.902 0.101 0.016 0.845 0.376 0.011 0.462 3.086 1.033 0.647 1.181 0.280 0.171 0.029 0.094 0.440 0.586 0.265 0.216 0.108 0.067 0.837 0.504 0.005 0.004 1108 chr6 21101596 21116839 + 0 NA intron (NM_017774, intron 13 of 15) L1MC5|LINE|L1 402906 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 0.281 0.240 0.049 0.238 1.199 0.310 0.623 0.291 6.090 3.703 4.150 1.476 0.400 0.552 0.305 0.932 0.043 0.912 0.050 0.482 0.999 0.303 0.044 0.059 0.157 0.155 0.113 0.258 0.236 0.075 0.210 0.068 0.172 0.473 0.111 0.400 0.352 0.142 0.800 0.480 0.880 1.134 1037 chr5 17233906 17260412 + 0 NA intron (NM_006317, intron 1 of 1) AluJb|SINE|Alu 29489 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 0.331 0.936 0.072 2.269 3.820 3.098 1.122 1.494 0.924 0.313 0.382 0.904 1.586 1.614 0.386 4.289 0.514 1.346 0.045 0.042 1.992 1.113 0.350 1.262 0.239 0.970 0.728 0.864 1.340 0.624 0.312 0.140 0.269 0.493 0.042 0.443 0.488 1.003 2.581 1.363 1.028 0.758 177 chr10 112151828 112194524 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -84449 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 0.829 1.977 0.051 0.920 1.278 0.902 2.341 1.549 4.376 2.558 0.832 0.538 0.819 2.106 1.787 4.018 0.467 2.796 0.457 0.039 2.366 1.523 0.490 2.947 2.773 2.651 1.258 0.581 0.945 3.585 1.618 1.878 3.618 2.447 3.111 1.849 1.171 0.484 0.718 0.569 0.502 0.482 265 chr11 118489355 118496387 + 0 NA intron (NM_001144758, intron 4 of 22) intron (NM_001144758, intron 4 of 22) 14565 NM_001144759 23187 Hs.504062 NM_015157 ENSG00000019144 PHLDB1 LL5A pleckstrin homology like domain family B member 1 protein-coding 2.307 4.830 0.009 1.082 2.619 2.564 4.338 2.750 4.993 1.965 1.559 3.582 1.896 2.868 5.128 3.454 1.524 3.542 0.598 0.138 1.993 1.602 1.522 1.108 8.926 1.671 0.944 2.647 0.937 0.255 2.175 0.352 1.747 3.495 2.744 0.990 0.252 1.258 2.623 3.844 2.436 1.698 283 chr12 6419018 6456173 + 0 NA TTS (NM_001144857) TTS (NM_001144857) 13688 NM_001346091 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 2.392 2.027 0.480 1.300 2.929 1.827 4.106 1.805 7.428 3.908 3.950 0.936 1.236 1.920 2.666 2.549 1.262 2.231 0.685 0.254 2.382 2.590 0.805 4.550 3.269 2.588 0.951 2.698 5.423 6.260 4.714 1.236 2.340 2.625 2.990 1.339 2.309 4.931 1.593 0.908 2.469 1.743 1007 chr4 77593611 77602524 + 0 NA intron (NM_020859, intron 2 of 10) AluY|SINE|Alu 101363 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 0.621 0.120 3.767 0.192 0.586 0.036 1.309 0.776 2.581 0.722 3.041 0.871 0.197 1.060 0.130 1.361 0.333 0.051 0.046 0.747 0.461 0.149 0.024 0.134 0.040 0.018 0.290 0.240 0.135 0.055 0.026 0.275 0.497 0.310 0.123 0.771 0.092 0.246 0.040 0.006 369 chr12 125388768 125426361 + 0 NA Intergenic Intergenic 7471 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 3.787 2.158 2.893 1.107 3.284 3.814 4.215 2.626 5.890 3.483 2.312 1.921 1.363 3.418 2.804 3.675 1.933 2.172 1.004 1.842 3.124 3.343 1.110 5.368 4.498 3.253 1.291 2.651 2.880 5.011 3.651 2.288 3.026 3.318 6.510 2.200 1.571 4.261 1.973 1.992 1.845 1.635 549 chr17 2074137 2086956 + 0 NA intron (NM_017575, intron 12 of 18) intron (NM_017575, intron 12 of 18) -55426 NR_110888 101927839 Hs.665648 NR_110888 ENSG00000225084 LOC101927839 - uncharacterized LOC101927839 ncRNA 0.062 0.888 0.024 0.414 0.460 0.024 0.461 0.024 0.244 0.171 1.106 0.285 0.747 0.343 0.158 0.923 0.008 6.657 1.442 0.032 0.298 0.197 0.040 0.100 0.172 0.203 0.080 0.090 0.832 0.343 0.143 0.025 0.105 0.256 0.210 0.038 0.038 0.114 0.801 0.931 0.036 0.012 937 chr3 14177717 14188203 + 0 NA intron (NM_024334, intron 11 of 11) intron (NM_024334, intron 11 of 11) 16520 NM_024334 79188 Hs.517817 NM_024334 ENSG00000170876 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 1.026 0.999 0.065 0.811 1.346 0.823 3.712 1.057 1.403 0.322 0.345 1.249 1.084 1.087 0.757 2.302 0.675 1.300 0.727 0.079 0.859 0.833 0.358 0.728 1.405 0.887 0.416 1.548 1.604 0.591 0.759 0.127 0.104 1.663 1.699 0.147 0.287 0.327 2.249 0.950 2.603 2.243 1047 chr5 44859479 44882055 + 0 NA Intergenic Intergenic 61740 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 1.271 0.193 0.027 1.229 2.375 0.157 1.130 0.707 1.462 0.815 0.662 1.140 2.313 0.707 0.302 1.078 0.131 0.564 0.125 7.063 0.830 0.493 0.032 0.070 0.303 0.433 0.242 0.575 2.050 0.123 0.476 0.621 0.356 1.038 0.459 0.189 0.066 0.476 0.759 0.524 1.278 1.576 635 chr17 61915532 61928521 + 0 NA Intergenic Intergenic -1675 NM_001098426 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 1.234 2.380 0.601 0.799 2.786 0.829 2.227 0.991 6.344 2.670 2.755 1.938 0.607 1.140 2.365 1.681 1.313 0.943 1.018 0.608 1.237 1.099 1.125 2.013 0.823 1.057 0.593 0.425 1.939 2.886 3.033 1.082 2.139 2.269 0.928 0.699 1.743 2.538 1.960 0.985 0.607 0.377 880 chr20 62326408 62340520 + 0 NA intron (NM_001134758, intron 5 of 6) intron (NM_001134758, intron 5 of 6) -5330 NM_001083113 84619 Hs.590868 NM_032527 ENSG00000197114 ZGPAT GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP zinc finger CCCH-type and G-patch domain containing protein-coding 3.751 6.026 0.166 1.218 3.470 4.348 1.839 1.208 8.073 4.678 2.602 2.077 3.597 2.844 2.149 2.534 0.780 1.221 0.574 0.885 2.215 2.688 1.033 1.364 13.862 6.862 2.941 1.641 5.642 2.250 5.855 0.944 1.097 2.265 5.563 1.253 0.797 6.290 2.616 3.762 3.026 2.474 749 chr19 56109845 56118492 + 0 NA exon (NM_153219, exon 2 of 2) exon (NM_153219, exon 2 of 2) 2462 NM_153219 147807 Hs.440291 NM_153219 ENSG00000171443 ZNF524 - zinc finger protein 524 protein-coding 5.509 5.205 2.433 1.045 3.478 3.784 3.886 1.023 7.293 3.780 5.686 1.524 2.006 4.192 3.871 2.176 2.137 2.809 2.710 3.083 1.349 1.764 4.679 3.244 7.346 3.604 1.443 2.409 2.350 6.590 3.411 4.001 2.221 4.100 2.929 2.346 3.826 5.431 3.871 2.336 2.711 1.780 1059 chr5 72604734 72625265 + 0 NA Intergenic L2|LINE|L2 -117211 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 0.346 0.496 0.043 0.966 1.381 0.031 1.017 2.984 6.892 2.144 0.809 1.311 0.514 1.135 0.450 3.755 0.070 1.290 0.029 0.014 4.342 3.007 0.054 0.111 2.106 0.583 0.452 0.287 3.240 0.103 0.849 0.046 0.068 1.855 0.560 1.171 0.056 0.198 0.624 1.596 3.363 3.305 969 chr3 158485520 158492598 + 0 NA Intergenic Intergenic -30656 NM_001289407 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 7.872 0.248 0.020 0.109 0.188 0.836 0.106 0.165 0.194 0.014 0.108 0.553 0.183 1.266 4.357 1.232 0.674 2.652 0.071 0.204 0.104 0.095 0.205 0.156 0.754 0.188 0.043 0.213 1.668 0.141 0.034 4.116 0.079 0.065 0.137 3.096 0.070 0.191 1.201 0.016 0.014 1160 chr6 122271200 122433376 + 0 NA Intergenic Intergenic -368408 NM_001243094 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 0.062 0.073 0.025 0.026 0.081 0.045 0.044 0.015 0.164 0.075 0.105 0.036 0.017 0.054 0.203 0.047 0.020 0.133 0.030 6.412 0.015 0.016 0.014 0.048 0.053 0.017 0.012 0.024 0.073 0.038 0.077 0.010 0.062 0.043 0.025 0.030 0.027 0.024 0.019 0.021 0.017 0.008 258 chr11 78492197 78535240 + 0 NA intron (NM_001098816, intron 15 of 33) intron (NM_001098816, intron 15 of 33) -227809 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 0.045 0.078 0.108 0.018 0.027 0.040 0.168 0.015 7.321 1.985 3.462 0.754 1.243 0.066 0.130 0.889 0.014 1.618 0.749 0.006 2.835 2.214 0.021 0.055 0.197 0.035 0.024 0.142 0.193 0.159 0.041 1.859 0.808 0.028 1.933 0.065 0.330 0.043 0.283 0.071 0.011 0.013 1064 chr5 90666124 90681171 + 0 NA intron (NR_138072, intron 2 of 7) intron (NR_138072, intron 2 of 7) 2467 NM_001329671 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 2.347 4.875 2.909 0.956 2.255 2.463 3.650 1.983 4.371 4.535 3.728 1.298 1.409 2.743 3.990 1.882 2.128 1.494 0.823 0.672 2.154 1.990 0.370 3.441 2.047 1.887 0.965 1.771 1.175 1.369 1.823 2.484 2.281 2.098 4.173 1.480 1.165 1.241 1.923 1.922 2.055 1.710 994 chr4 26218618 26229825 + 0 NA Intergenic L1MA4|LINE|L1 -97111 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 1.248 0.193 0.014 1.751 2.156 0.046 0.701 1.370 2.525 0.800 0.305 0.686 0.389 1.165 0.479 4.245 0.102 0.340 0.054 0.025 0.424 0.098 0.039 0.057 0.084 0.328 0.216 0.819 0.215 0.080 0.193 0.028 0.173 1.171 0.190 0.219 0.081 0.111 0.857 0.493 0.026 0.019 788 chr2 101468016 101523387 + 0 NA intron (NM_002518, intron 1 of 20) L1MA9|LINE|L1 59088 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 0.290 0.273 0.030 0.397 0.278 0.732 0.495 0.432 5.634 3.069 1.091 0.590 0.901 0.102 0.885 1.880 0.022 1.211 0.275 0.013 0.603 0.214 0.054 2.905 2.054 0.292 0.165 0.369 0.842 2.480 0.070 1.226 2.190 0.560 2.062 0.844 1.073 1.146 0.262 0.600 0.254 0.278 182 chr10 114830654 114841202 + 0 NA intron (NM_001146285, intron 4 of 12) AluJr|SINE|Alu 30814 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 0.532 1.856 0.053 0.772 1.495 4.734 0.522 0.960 2.165 0.863 0.598 0.468 0.427 1.099 0.729 2.750 0.813 2.329 0.056 0.066 1.443 1.101 0.986 1.774 2.836 0.881 0.552 0.989 1.761 2.905 1.358 1.309 1.686 2.106 2.595 1.484 1.393 0.673 1.237 0.627 0.409 0.386 828 chr2 239191223 239201885 + 0 NA intron (NM_022817, intron 1 of 22) intron (NM_022817, intron 1 of 22) 653 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 1.117 1.128 0.770 0.571 1.895 0.815 1.263 0.462 12.525 5.917 3.218 1.602 0.546 1.025 2.077 1.595 0.445 0.313 1.350 0.375 1.511 1.348 0.097 6.279 0.779 0.498 0.359 1.317 0.301 6.282 0.722 1.710 3.688 6.523 0.919 2.307 4.495 1.003 0.488 1.820 0.140 0.124 76 chr1 151479599 151490040 + 0 NA intron (NM_020770, intron 1 of 20) intron (NM_020770, intron 1 of 20) 957 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 4.822 0.573 6.656 2.413 5.238 0.993 4.007 4.678 42.666 34.700 4.498 3.247 0.440 5.486 2.791 3.905 1.966 0.309 3.889 0.437 0.390 0.129 0.559 0.245 0.665 0.773 0.456 4.053 0.314 1.123 1.130 6.175 8.583 8.160 0.694 2.443 4.477 1.168 0.592 0.226 0.342 0.112 499 chr16 12038990 12045432 + 0 NA Intergenic L1MC5|LINE|L1 -16753 NM_001192 608 Hs.2556 NM_001192 ENSG00000048462 TNFRSF17 BCM|BCMA|CD269|TNFRSF13A TNF receptor superfamily member 17 protein-coding 0.109 0.221 8.700 0.128 0.132 0.059 0.062 0.066 0.378 0.124 0.112 0.023 0.036 0.034 0.197 0.231 0.197 0.119 0.077 0.015 0.194 0.090 0.125 0.116 0.152 0.059 0.048 0.071 0.124 0.177 0.077 0.085 0.175 0.100 0.122 0.038 0.051 0.081 0.171 0.057 0.018 0.008 307 chr12 27482489 27499195 + 0 NA intron (NM_001248005, intron 1 of 13) L2c|LINE|L2 5055 NM_020183 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 4.739 2.597 0.126 2.522 5.193 0.261 1.700 2.270 1.495 0.799 1.073 0.297 3.642 4.037 2.323 3.389 0.647 2.228 0.048 0.041 1.299 0.889 0.118 0.197 2.558 0.868 0.467 1.580 2.531 0.799 3.388 0.326 1.792 4.269 1.951 1.264 0.514 2.523 0.495 2.886 0.293 0.106 820 chr2 219856889 219868608 + 0 NA Intergenic Intergenic 3682 NR_029867 494324 NR_029867 ENSG00000198973 MIR375 MIRN375|hsa-mir-375|miRNA375|mir-375 microRNA 375 ncRNA 0.166 0.186 0.042 0.356 0.559 0.334 0.877 0.225 2.589 1.824 0.445 0.199 0.181 0.206 0.181 0.508 0.073 0.182 5.260 0.036 0.379 0.192 0.271 1.614 0.172 0.124 0.126 0.197 0.145 0.584 0.418 0.215 0.277 0.567 0.340 0.168 0.177 1.648 0.197 0.201 0.020 0.040 96 chr1 155050383 155064848 + 0 NA exon (NM_004952, exon 2 of 5) exon (NM_004952, exon 2 of 5) 6267 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding 0.745 0.722 0.327 0.579 1.202 2.224 0.713 0.512 1.954 0.912 1.332 0.526 0.659 0.844 0.829 0.466 0.474 0.509 0.730 0.517 0.316 0.225 0.521 0.963 1.250 0.317 0.242 0.301 0.443 1.216 1.150 3.010 2.604 1.137 1.771 0.898 2.383 5.663 0.746 0.416 0.211 0.102 842 chr20 22555631 22566506 + 0 NA TTS (NM_021784) TTS (NM_021784) -1788 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 0.122 0.291 0.023 0.087 0.428 0.023 3.143 0.283 2.962 1.774 4.664 0.884 1.241 1.538 0.089 2.985 0.117 7.505 0.013 1.156 1.116 0.007 0.049 0.107 0.139 0.149 0.093 0.102 4.518 0.026 2.201 0.068 0.535 0.024 0.079 0.117 0.316 0.993 6.384 0.011 0.029 216 chr11 61581457 61585439 + 0 NA promoter-TSS (NM_001281502) promoter-TSS (NM_001281502) -227 NM_001281501 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 5.007 7.611 1.619 1.933 6.793 7.581 4.929 2.952 10.436 3.414 4.926 4.235 2.309 2.635 7.403 4.207 2.269 3.633 5.112 5.356 3.204 4.145 4.934 6.559 11.233 6.848 3.291 3.258 11.065 9.363 6.777 3.584 3.563 10.506 6.249 2.052 1.502 7.102 5.417 3.056 5.144 3.536 826 chr2 235401911 235412705 + 0 NA Intergenic Intergenic -1611 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 1.744 0.701 0.236 0.757 1.189 0.198 0.282 0.363 1.588 0.431 1.440 2.498 2.407 0.142 2.905 2.360 0.558 0.951 0.658 0.064 1.505 1.246 0.685 0.313 0.889 0.502 0.383 0.482 3.022 2.301 2.228 1.178 0.197 1.195 2.166 0.113 0.544 2.104 1.394 1.830 2.659 2.756 7 chr1 6444602 6454995 + 0 NA intron (NM_007274, intron 1 of 8) AluSx1|SINE|Alu -3915 NM_181864 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 0.990 1.672 0.120 0.553 1.511 3.377 1.558 0.438 nan 0.809 0.679 1.116 0.681 0.766 0.990 1.366 0.790 0.709 0.494 0.894 0.962 1.058 1.111 0.827 3.088 1.494 0.760 0.575 0.616 2.123 4.554 0.591 1.268 3.349 1.995 0.768 0.867 2.741 1.086 1.201 0.670 0.669 857 chr20 44599131 44603023 + 0 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -244 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 7.538 8.556 4.133 3.064 6.644 8.637 4.813 2.496 7.674 4.689 7.045 3.956 4.639 3.832 5.581 3.543 4.016 2.195 3.753 6.210 2.839 4.259 3.791 6.975 15.247 5.390 2.483 4.149 7.880 6.037 7.537 4.399 4.806 9.793 8.257 3.632 5.166 12.061 6.599 8.277 4.364 3.506 621 chr17 46123879 46128413 + 0 NA intron (NM_001330262, intron 1 of 4) CpG 460 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 6.236 7.259 4.370 2.094 5.168 4.176 5.089 1.935 8.551 5.929 3.842 2.786 3.896 4.538 4.493 4.964 1.847 3.978 1.323 2.170 4.748 4.851 3.082 5.021 7.450 8.909 4.372 1.809 5.756 6.713 6.877 3.565 3.352 5.556 4.104 2.188 3.664 6.658 3.040 3.101 3.394 1.896 1319 chr9 128461352 128470872 + 0 NA intron (NM_001006617, intron 1 of 11) intron (NM_001006617, intron 1 of 11) 3401 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 0.648 1.026 0.092 1.514 2.082 0.304 2.746 0.366 1.641 0.945 0.592 0.505 0.833 1.936 0.842 1.038 0.363 0.543 0.166 0.277 1.693 1.132 0.763 0.816 0.927 1.791 1.049 0.457 0.936 1.300 5.392 0.321 0.690 1.691 6.058 0.281 0.600 1.070 1.019 0.622 1.307 1.355 200 chr11 6623388 6629515 + 0 NA intron (NM_001278442, intron 2 of 11) L2c|LINE|L2 1411 NM_001014795 3611 Hs.706355 NM_004517 ENSG00000166333 ILK HEL-S-28|ILK-1|ILK-2|P59|p59ILK integrin linked kinase protein-coding 2.522 3.881 0.567 0.900 2.469 3.978 1.517 1.585 3.425 2.495 2.572 0.932 1.225 1.496 1.633 4.061 0.404 2.198 1.037 0.723 2.118 1.937 1.801 1.324 5.692 6.532 3.168 0.873 4.625 2.267 2.392 2.098 1.272 2.689 4.571 1.151 1.096 2.644 2.124 2.921 2.241 1.733 400 chr14 32541920 32559185 + 0 NA intron (NM_001173, intron 1 of 6) intron (NM_001173, intron 1 of 6) 4057 NM_001173 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 1.802 1.226 7.250 0.660 2.362 0.442 3.122 1.209 10.407 8.748 2.750 0.958 0.765 1.150 1.503 1.311 0.836 2.374 0.619 1.365 1.289 1.319 0.512 1.117 1.670 1.105 0.631 1.588 1.522 1.886 1.021 1.405 1.540 2.381 3.766 1.075 0.716 1.699 2.813 1.508 0.704 0.417 238 chr11 65654259 65689175 + 0 NA Intergenic L1MB5|LINE|L1 -3720 NM_005438 8061 Hs.283565 NM_005438 ENSG00000175592 FOSL1 FRA|FRA1|fra-1 FOS like 1, AP-1 transcription factor subunit protein-coding 5.957 5.692 0.152 1.985 4.310 4.444 3.217 3.122 2.985 1.757 1.163 3.288 4.862 5.094 3.504 8.218 0.971 3.563 0.933 0.648 4.908 6.328 2.314 2.567 20.121 11.928 4.466 3.872 16.130 3.059 7.777 0.671 2.156 5.516 15.712 1.196 1.599 4.757 4.238 6.678 6.204 4.785 259 chr11 93470140 93476702 + 0 NA intron (NM_024116, intron 1 of 5) AluJb|SINE|Alu 1282 NM_024116 79101 Hs.355750 NM_024116 ENSG00000166012 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding 2.906 3.497 1.791 0.954 3.304 2.849 2.568 1.780 4.094 4.177 3.113 1.949 1.725 4.830 9.300 2.891 1.281 2.357 2.397 1.320 2.403 2.475 1.641 3.634 8.701 4.883 2.226 2.872 4.310 2.366 2.674 2.226 3.438 2.982 7.314 2.478 2.738 2.605 3.796 1.978 2.446 1.756 1206 chr7 98963100 98979228 + 0 NA Intergenic AluSc|SINE|Alu -1134 NM_005720 10095 Hs.489284 NM_005720 ENSG00000130429 ARPC1B ARC41|p40-ARC|p41-ARC actin related protein 2/3 complex subunit 1B protein-coding 1.075 1.941 5.013 0.876 2.823 1.222 6.545 1.098 4.155 2.222 3.152 0.480 0.395 1.625 0.714 3.198 0.931 0.673 0.317 0.533 0.760 0.775 1.171 1.731 4.309 0.988 0.458 2.170 1.029 2.095 3.748 0.405 1.229 3.182 1.182 0.894 1.498 3.299 0.998 0.584 0.589 0.293 899 chr21 44374535 44378940 + 0 NA Intergenic Intergenic -5613 NR_049889 100847013 NR_049889 ENSG00000264580 MIR5692B - microRNA 5692b ncRNA 0.474 0.143 7.497 0.888 1.366 0.015 1.373 1.125 5.847 1.546 2.085 0.596 0.135 0.810 1.311 1.788 0.953 0.251 0.031 0.334 0.147 0.520 0.404 0.168 0.150 0.107 1.570 0.262 0.185 0.097 0.089 1.461 1.500 0.084 1.246 2.081 0.342 0.437 0.068 0.013 0.011 800 chr2 169866309 169873416 + 0 NA exon (NM_003742, exon 5 of 28) exon (NM_003742, exon 5 of 28) 17971 NM_003742 8647 Hs.658439 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 2.721 0.138 0.017 1.786 2.604 0.054 1.780 0.967 4.376 1.882 2.367 2.072 0.350 5.680 0.444 1.487 0.027 1.141 0.015 0.592 0.193 0.042 0.241 0.090 0.152 0.066 1.166 0.281 0.263 0.080 0.367 1.116 0.293 1.921 2.465 0.269 0.057 0.403 0.932 0.008 591 chr17 38170043 38184022 + 0 NA intron (NM_001079518, intron 22 of 24) AluJo|SINE|Alu 5418 NR_033662 1440 Hs.2233 NM_000759 ENSG00000108342 CSF3 C17orf33|CSF3OS|GCSF colony stimulating factor 3 protein-coding 1.540 1.306 0.847 0.270 0.655 0.745 0.349 0.182 1.671 0.553 2.648 0.604 0.633 0.803 0.255 0.994 0.103 0.140 0.136 0.109 0.247 0.136 0.216 0.442 9.822 3.736 1.350 0.117 0.321 0.681 0.204 0.383 0.285 0.463 0.178 0.088 0.241 1.210 0.840 7.302 0.678 0.527 363 chr12 124982767 125010106 + 0 NA intron (NM_001077261, intron 2 of 47) MLT1C|LTR|ERVL-MaLR 55574 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 3.253 0.603 0.998 0.695 1.927 0.287 1.329 0.461 9.700 4.990 2.965 1.717 1.198 0.621 0.918 1.814 0.952 1.349 0.704 0.081 0.960 0.766 0.275 0.646 0.446 0.468 0.255 0.734 0.499 0.917 2.244 0.571 0.583 3.760 1.094 0.667 0.368 1.078 0.450 1.223 0.699 0.371 1103 chr6 12007289 12014371 + 0 NA Intergenic Intergenic -1894 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 3.497 5.231 3.641 0.990 3.135 4.222 4.074 2.214 3.615 3.764 8.219 1.218 1.084 1.825 8.058 2.114 1.923 3.334 1.867 1.661 3.474 4.866 1.549 2.713 8.526 4.946 2.193 1.142 3.153 4.379 6.722 3.061 5.231 7.924 5.105 1.500 3.521 7.170 3.463 2.978 1.409 0.633 316 chr12 51609791 51614158 + 0 NA promoter-TSS (NR_026893) promoter-TSS (NR_026893) -435 NR_026893 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding 1.732 1.644 0.370 1.342 2.981 4.714 3.205 1.089 3.961 2.542 2.075 0.636 1.110 1.278 0.620 1.012 0.546 1.709 0.711 1.936 2.764 2.715 2.906 3.495 0.972 3.067 1.293 0.549 3.265 5.376 6.802 3.120 1.769 3.694 17.114 1.347 1.405 4.886 2.408 1.022 1.055 0.616 472 chr15 90940842 90967140 + 0 NA intron (NM_003870, intron 2 of 37) L1PA5|LINE|L1 22518 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 1.081 0.996 2.090 0.905 1.842 2.600 1.313 1.190 7.107 4.396 1.869 1.665 0.623 0.976 1.588 1.782 1.133 2.211 0.334 0.052 1.288 0.761 1.516 1.205 0.736 0.411 0.244 0.785 1.748 0.784 0.953 0.757 1.736 1.840 3.940 1.159 1.287 0.430 1.220 1.325 0.344 0.287 569 chr17 17711951 17766618 + 0 NA intron (NM_001005291, intron 1 of 19) L2b|LINE|L2 1041 NM_001005291 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 0.872 0.667 0.999 0.525 1.845 1.870 1.117 0.438 6.539 2.972 3.836 1.161 0.317 0.860 2.067 1.532 1.132 1.263 0.853 0.878 0.780 0.824 0.715 2.856 1.522 1.319 0.627 1.727 0.602 4.376 3.829 1.506 1.366 2.397 2.700 1.330 1.104 3.189 2.303 0.717 0.708 0.504 507 chr16 29814712 29841700 + 0 NA exon (NM_024516, exon 1 of 3) exon (NM_024516, exon 1 of 3) 678 NM_024516 79447 Hs.702841 NM_024516 ENSG00000280789 PAGR1 C16orf53|GAS|PA1 PAXIP1 associated glutamate rich protein 1 protein-coding 3.789 5.425 0.876 1.133 3.038 3.689 4.415 0.982 5.961 2.831 3.395 1.712 1.665 3.864 3.006 2.867 1.055 2.560 4.200 1.336 2.944 3.641 2.166 3.602 5.251 2.531 1.176 2.595 2.582 5.058 5.190 2.754 3.519 2.585 6.247 1.781 1.081 5.341 3.559 2.274 2.367 1.536 1021 chr4 149706939 149719240 + 0 NA Intergenic Intergenic 150441 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 0.352 0.914 0.111 0.195 0.251 0.021 1.884 1.860 0.337 0.105 0.810 0.427 0.157 2.233 0.109 0.144 5.035 0.033 0.011 0.835 0.401 0.067 0.052 0.024 0.025 0.006 0.138 0.066 0.047 0.025 0.054 0.216 0.007 0.049 0.389 0.005 0.225 0.407 0.004 127 chr1 183422316 183451835 + 0 NA intron (NR_040063, intron 3 of 4) intron (NR_040063, intron 3 of 4) 4042 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 1.499 1.219 0.399 0.931 1.782 0.576 1.706 1.597 2.485 1.388 2.185 1.355 0.412 2.315 2.142 2.135 0.528 0.736 0.375 0.722 1.980 1.550 0.644 1.627 1.108 0.997 0.402 1.471 0.904 1.049 0.597 0.613 1.844 2.024 1.761 1.700 0.993 0.719 0.766 0.671 0.592 0.334 1147 chr6 51330251 51346330 + 0 NA Intergenic Intergenic -148378 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.023 0.067 0.016 0.176 0.283 0.023 0.071 0.013 2.704 0.941 0.761 0.263 0.007 0.048 0.097 0.362 0.010 0.046 6.021 0.009 0.004 0.023 0.005 0.063 0.108 0.011 0.010 0.047 0.175 0.010 0.035 0.039 0.370 0.142 0.017 0.099 0.499 0.022 0.024 0.033 0.007 0.010 42 chr1 55881589 55900802 + 0 NA Intergenic Intergenic 199881 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.218 1.270 0.155 1.254 1.342 2.555 0.930 1.954 nan 0.267 0.639 1.279 0.909 2.161 0.393 5.859 0.104 1.409 0.052 0.007 2.067 1.498 0.686 0.728 2.949 1.689 0.819 2.449 1.718 1.839 0.637 0.447 0.993 1.239 3.481 0.891 1.382 1.380 1.423 1.437 1.145 0.921 1315 chr9 123686588 123694946 + 0 NA intron (NM_001190945, intron 1 of 8) intron (NM_001190945, intron 1 of 8) 684 NM_001190945 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding 0.612 1.838 0.030 2.513 2.814 0.284 2.583 0.795 2.523 1.090 0.880 1.086 1.112 1.692 0.588 2.215 0.172 2.051 0.553 0.016 2.270 2.051 0.837 0.721 6.355 1.601 0.969 0.553 1.638 1.373 6.918 0.539 1.567 1.623 1.500 0.379 0.708 3.162 1.280 0.425 0.041 0.030 1182 chr7 12806614 12813060 + 0 NA Intergenic Intergenic 82926 NM_001195396 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.501 0.264 10.176 0.029 0.147 0.040 0.632 0.196 1.240 0.252 2.106 0.539 0.054 0.034 0.210 0.549 0.281 1.806 0.030 0.302 0.508 0.168 0.023 0.133 0.028 0.023 0.024 0.118 0.116 0.316 0.076 0.171 0.440 0.132 0.072 0.095 0.180 0.063 0.111 0.214 0.009 12 chr1 8065036 8090849 + 0 NA intron (NM_018948, intron 1 of 3) intron (NM_018948, intron 1 of 3) 8451 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 2.775 3.524 3.100 0.805 2.772 2.868 3.160 1.134 nan 3.957 2.822 1.172 1.341 1.787 2.483 1.818 1.334 1.994 1.361 0.124 2.298 2.245 0.373 1.518 2.730 0.836 0.500 1.153 1.646 2.023 2.668 1.426 2.838 2.411 4.624 0.961 1.704 3.039 1.278 1.244 0.272 0.178 376 chr13 73628143 73689118 + 0 NA Intergenic HAL1|LINE|L1 25700 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 1.721 0.763 1.622 0.188 0.488 0.749 0.391 0.442 5.973 3.430 1.203 0.503 0.131 0.679 1.504 0.768 0.391 0.361 0.275 0.034 0.691 0.477 0.155 0.442 0.662 0.286 0.207 0.421 0.479 0.743 0.305 0.477 1.224 0.481 0.054 1.167 0.786 0.260 0.319 0.433 0.148 0.098 595 chr17 38435381 38447125 + 0 NA Intergenic AluSx1|SINE|Alu -2893 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 15.013 1.831 0.528 0.902 1.750 0.849 1.730 1.077 1.653 0.638 1.625 0.682 0.529 1.090 1.916 2.163 0.764 0.506 0.119 0.283 1.192 0.900 0.465 0.780 1.284 0.691 0.379 1.699 0.879 0.600 0.532 1.879 1.110 3.479 0.878 0.853 1.014 0.947 1.154 0.517 2.060 1.260 512 chr16 51181722 51187888 + 0 NA promoter-TSS (NM_001127892) promoter-TSS (NM_001127892) -297 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 0.035 0.112 0.222 0.085 1.987 0.077 0.442 0.551 0.022 0.024 1.229 0.032 0.023 3.185 0.045 0.450 0.344 0.036 2.371 0.075 0.049 0.025 0.012 0.161 1.017 0.023 4.761 0.011 0.069 0.020 0.040 3.853 0.025 0.019 0.016 896 chr21 40167685 40193129 + 0 NA intron (NM_005239, intron 1 of 9) intron (NM_005239, intron 1 of 9) 2652 NM_005239 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 3.707 0.990 1.095 0.940 1.404 0.119 1.292 0.896 3.618 1.556 1.921 1.366 0.458 1.131 1.443 1.622 0.868 0.793 1.112 0.104 1.341 1.087 0.469 0.219 1.281 0.720 0.426 0.874 0.928 1.659 0.405 2.942 3.907 2.201 1.709 2.115 3.949 0.449 1.247 0.663 0.336 0.266 763 chr2 24297613 24308593 + 0 NA intron (NM_147184, intron 4 of 5) AluSx|SINE|Alu 3359 NM_001291328 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 1.599 2.278 0.604 1.209 2.500 2.718 3.637 1.000 7.954 6.297 2.164 1.316 1.284 2.088 1.873 1.932 0.778 1.348 1.227 0.806 1.228 1.305 1.162 1.673 2.920 1.490 0.758 1.059 1.692 3.416 1.868 1.322 1.767 2.378 1.867 1.359 1.303 2.947 1.184 1.703 0.986 0.689 690 chr19 4908204 4916844 + 0 NA intron (NM_001048201, intron 2 of 17) L1ME2z|LINE|L1 2145 NM_001290052 29128 Hs.108106 NM_013282 ENSG00000276043 UHRF1 ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95 ubiquitin like with PHD and ring finger domains 1 protein-coding 2.969 2.316 0.266 1.582 4.316 4.347 4.271 1.384 3.945 1.562 2.100 1.334 1.474 2.508 2.490 3.219 1.548 2.856 0.496 1.313 2.864 2.868 2.100 1.513 10.710 3.938 1.524 1.949 6.879 2.360 4.304 0.839 1.618 4.903 3.173 1.373 4.190 9.135 4.419 3.039 5.517 3.976 1082 chr5 142618387 142634764 + 0 NA Intergenic AluSz|SINE|Alu 54510 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 0.964 2.382 0.309 1.542 2.536 1.400 2.348 2.051 4.059 1.882 0.691 2.036 3.292 4.288 1.329 5.066 1.325 3.152 0.042 0.051 5.668 4.967 0.288 2.417 5.238 1.329 0.594 2.253 4.771 1.601 1.195 1.287 1.413 1.634 6.159 0.906 0.699 0.402 2.523 3.330 1.639 1.076 1211 chr7 100523533 100531581 + 0 NA Intergenic Intergenic -19495 NM_005960 4584 Hs.703577 NM_005960 ENSG00000169894 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 0.170 0.069 5.672 0.190 0.104 0.048 0.161 0.130 0.555 0.090 1.412 0.018 0.030 0.027 0.322 0.256 0.452 0.117 0.024 0.017 0.093 0.009 0.065 0.087 0.126 0.030 0.020 0.285 0.284 0.142 0.067 0.010 0.209 0.223 0.046 0.339 1.036 0.083 0.117 0.129 0.019 379 chr13 73890876 73947759 + 0 NA Intergenic L1MEe|LINE|L1 -219064 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 1.559 0.116 0.047 0.151 0.177 0.051 0.251 0.544 4.494 1.213 0.494 0.291 0.042 0.807 0.900 0.332 0.107 0.499 0.041 0.010 0.888 0.416 0.060 0.072 0.172 0.034 0.033 0.436 0.246 0.500 0.033 1.232 0.889 0.078 0.018 1.047 0.512 0.039 0.035 0.130 0.012 0.003 356 chr12 116795139 116824870 + 0 NA Intergenic AluJr|SINE|Alu 56119 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 0.094 0.235 0.025 0.019 0.046 0.047 0.062 0.134 0.948 0.176 0.236 0.103 0.118 0.201 0.243 0.295 0.104 0.735 0.259 0.056 0.318 0.209 0.197 0.264 0.669 0.357 0.205 0.084 1.209 6.046 0.145 3.228 1.699 0.110 0.075 0.189 0.162 1.297 0.393 0.195 0.277 0.085 18 chr1 16463473 16518725 + 0 NA Intergenic Intergenic -8495 NM_001329090 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 4.922 3.282 1.693 1.536 3.259 3.964 4.322 2.163 7.757 4.575 3.811 2.882 1.697 2.625 3.033 3.867 1.994 1.835 0.174 0.347 2.352 2.374 2.338 1.588 5.970 4.548 1.787 1.394 3.934 3.252 5.298 0.829 1.988 6.125 4.742 1.969 2.318 5.361 2.036 3.280 2.623 1.929 552 chr17 4605425 4615322 + 0 NA Intergenic AluY|SINE|Alu -2741 NM_001278241 27043 Hs.744899 NM_014389 ENSG00000141456 PELP1 MNAR|P160 proline, glutamate and leucine rich protein 1 protein-coding 1.161 1.285 0.531 0.822 2.173 1.440 1.672 0.404 3.514 1.867 1.103 0.740 0.545 1.182 1.575 1.013 0.870 1.369 1.300 0.742 0.580 0.517 1.011 2.600 2.606 1.481 0.812 1.086 1.111 3.158 2.206 0.908 1.079 3.017 4.873 0.922 1.106 3.423 2.370 0.468 0.975 0.635 1155 chr6 108878170 108887198 + 0 NA exon (NM_201559, exon 2 of 4) exon (NM_201559, exon 2 of 4) 615 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 3.594 2.741 0.736 1.037 3.385 1.313 2.896 0.835 5.171 2.916 4.130 1.419 1.010 2.632 6.293 2.063 0.946 2.536 1.028 3.243 1.506 1.892 0.925 0.397 4.596 3.031 1.755 1.750 1.965 2.209 5.593 0.559 1.621 4.991 2.966 0.866 1.447 3.643 2.324 1.719 5.887 5.876 585 chr17 37018039 37063663 + 0 NA intron (NM_001271608, intron 2 of 5) AluSq|SINE|Alu 14739 NM_001271608 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 4.019 4.296 0.799 0.801 1.815 4.046 1.102 0.865 0.838 0.516 0.905 0.695 1.075 1.235 1.838 2.621 1.096 0.583 0.449 0.493 1.303 1.070 1.894 1.381 5.055 2.139 0.863 0.845 3.237 2.488 1.097 0.339 0.816 1.460 0.961 0.542 0.713 2.095 1.155 2.032 1.791 0.952 397 chr14 24860148 24869660 + 0 NA Intergenic LTR33|LTR|ERVL -3088 NM_025081 57523 Hs.288348 NM_025081 ENSG00000205978 NYNRIN CGIN1|KIAA1305 NYN domain and retroviral integrase containing protein-coding 2.527 0.220 1.972 0.378 1.499 0.087 1.941 1.417 9.978 3.646 5.750 0.969 0.025 1.066 2.189 1.749 0.503 0.724 0.105 0.023 0.095 0.030 0.171 0.520 0.126 0.120 0.066 1.686 0.357 1.194 0.315 0.332 2.026 1.409 0.088 1.105 1.132 0.765 0.133 0.051 0.030 0.027 1053 chr5 56782730 56801598 + 0 NA Intergenic HAL1|LINE|L1 -13528 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 1.341 0.374 0.279 0.541 0.654 0.077 1.797 2.677 1.683 0.351 1.744 1.379 1.307 2.026 0.843 3.995 0.475 3.589 0.095 2.270 1.502 0.043 0.141 0.375 0.373 0.169 0.880 1.162 0.285 0.724 0.143 0.285 0.616 1.771 0.540 0.097 0.403 0.912 0.823 1.284 1.583 1101 chr6 7106183 7167890 + 0 NA intron (NM_001003700, intron 1 of 11) intron (NM_001003700, intron 1 of 11) 28950 NM_001003698 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 0.584 0.660 0.513 0.439 1.112 0.407 0.480 0.403 4.825 1.976 1.606 0.448 0.184 0.685 0.731 1.023 0.407 0.345 0.258 0.380 0.888 0.664 0.266 0.299 0.518 0.553 0.275 0.378 0.577 0.940 1.059 0.362 0.982 1.564 0.709 0.597 1.067 0.764 0.427 0.321 0.132 0.066 1203 chr7 56172446 56175104 + 0 NA intron (NM_016139, intron 1 of 3) intron (NM_016139, intron 1 of 3) 548 NM_016139 51142 Hs.389996 NM_016139 ENSG00000106153 CHCHD2 C7orf17|MNRR1|NS2TP|PARK22 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding 6.372 3.119 2.835 0.880 2.458 2.376 4.624 1.109 5.758 5.703 20.042 1.375 0.893 1.735 13.086 2.625 2.300 2.310 2.098 1.761 3.031 2.572 1.134 1.396 4.297 2.336 1.337 3.689 3.444 2.786 3.231 3.096 3.269 3.291 5.096 2.020 1.787 3.513 5.595 1.939 1.884 1.650 173 chr10 94448435 94460509 + 0 NA exon (NM_002729, exon 4 of 4) exon (NM_002729, exon 4 of 4) 4791 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 4.452 2.737 0.031 0.392 0.887 0.202 0.342 0.302 1.425 0.802 0.071 0.114 0.370 0.488 0.582 0.746 0.079 1.876 0.183 0.436 1.090 0.970 0.923 0.679 1.399 0.862 0.496 0.088 0.223 3.675 1.240 1.501 0.522 0.951 1.379 0.488 0.109 1.013 0.066 0.032 0.065 0.029 849 chr20 33288112 33299081 + 0 NA intron (NM_001329429, intron 2 of 4) intron (NM_001329429, intron 2 of 4) 1050 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 1.455 1.526 0.431 0.673 1.561 2.748 0.676 0.442 nan 2.437 2.517 0.864 0.626 0.408 0.494 0.447 0.756 1.431 2.029 0.796 0.749 0.411 0.980 0.794 2.151 0.758 0.539 0.511 0.781 1.789 4.421 2.589 2.158 5.223 1.137 0.705 2.274 4.178 0.603 1.171 0.483 0.199 1093 chr5 176725904 176732130 + 0 NA intron (NR_109790, intron 5 of 6) intron (NR_109790, intron 5 of 6) 1728 NR_109790 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 2.457 2.634 6.309 0.579 1.771 1.893 2.380 1.570 4.312 3.065 1.792 1.107 1.201 2.963 1.602 1.940 1.574 1.418 0.744 0.428 1.510 1.353 1.657 2.071 2.901 4.408 2.241 1.081 3.317 2.418 3.723 1.549 1.321 4.146 2.401 1.101 1.554 3.182 1.026 1.811 1.403 0.865 318 chr12 51661183 51667159 + 0 NA promoter-TSS (NM_001033873) promoter-TSS (NM_001033873) 31 NM_001031628 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 4.309 1.914 2.027 1.522 3.408 0.658 5.355 2.507 3.733 1.621 2.093 2.059 2.337 3.176 3.890 4.653 1.053 2.175 0.049 0.833 3.603 4.808 0.978 0.470 3.965 3.832 1.864 3.052 8.403 3.296 6.638 0.423 2.439 3.594 13.528 1.438 1.993 3.102 2.953 2.111 4.250 4.193 317 chr12 51631470 51641857 + 0 NA 3' UTR (NM_001136268, exon 3 of 3) 3' UTR (NM_001136268, exon 3 of 3) 4155 NM_001136266 9802 Hs.369761 NM_014764 ENSG00000183283 DAZAP2 PRTB DAZ associated protein 2 protein-coding 0.891 1.006 1.212 0.561 1.912 1.106 1.799 0.700 2.916 1.849 1.412 0.380 0.695 0.903 1.251 1.088 0.483 0.419 0.522 0.775 0.698 0.871 0.781 0.878 1.022 1.127 0.519 0.641 1.353 1.920 2.316 1.063 1.646 2.525 5.197 0.541 1.511 2.122 1.036 0.571 1.308 1.106 792 chr2 111874458 111881435 + 0 NA promoter-TSS (NM_207002) promoter-TSS (NM_207002) -545 NM_207002 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 2.377 2.425 0.132 2.121 5.546 0.787 4.545 1.073 4.428 2.216 2.933 1.597 0.579 1.532 2.705 2.137 1.152 1.283 0.701 0.626 1.344 0.984 1.150 1.075 2.101 1.321 0.937 1.218 1.549 2.707 3.741 1.283 2.141 6.760 2.301 1.172 1.605 3.563 1.527 0.958 0.660 0.546 1263 chr8 102446244 102487780 + 0 NA Intergenic Intergenic -37655 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.411 0.309 3.165 0.315 0.559 1.385 0.233 0.871 2.982 0.808 2.332 1.452 0.541 0.155 2.350 2.843 1.199 1.436 0.063 0.017 0.727 0.290 0.238 1.627 1.337 0.119 0.068 0.621 0.481 0.835 0.164 0.302 1.451 1.241 1.161 0.514 1.869 1.009 1.309 1.373 0.058 0.032 236 chr11 65546271 65561189 + 0 NA promoter-TSS (NM_004561) promoter-TSS (NM_004561) 754 NR_031600 100302196 NR_031600 ENSG00000071894 MIR1234 MIRN1234|hsa-mir-1234 microRNA 1234 ncRNA 1.931 0.465 0.777 0.952 1.999 1.720 2.281 0.913 5.334 2.446 1.818 0.550 0.214 1.698 2.324 2.083 1.328 0.333 0.673 0.261 0.454 0.456 0.823 0.504 2.291 0.954 0.497 1.106 0.611 1.386 1.340 0.761 3.707 2.680 0.664 1.400 2.767 2.250 0.444 0.296 0.382 0.245 782 chr2 74728920 74736210 + 0 NA TTS (NR_024606) TTS (NR_024606) -2122 NM_001009812 85474 Hs.516124 NM_001009812 ENSG00000179528 LBX2 LP3727 ladybird homeobox 2 protein-coding 3.147 3.486 1.062 2.127 4.651 4.883 3.922 1.721 11.493 7.375 2.658 2.760 2.671 2.536 2.328 4.981 1.781 2.741 2.305 3.271 3.997 5.861 2.091 3.490 4.108 7.395 3.114 3.832 8.669 4.229 3.434 6.443 3.026 3.349 6.206 1.811 1.979 5.394 2.674 3.880 5.775 4.577 853 chr20 42643618 42651098 + 0 NA intron (NM_001098798, intron 3 of 7) intron (NM_001098798, intron 3 of 7) 72822 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 0.143 0.489 0.033 0.406 0.355 0.126 0.308 0.099 0.416 0.110 0.178 0.567 1.498 0.306 0.512 1.506 0.165 1.944 0.645 0.018 0.642 0.264 0.029 0.106 0.464 0.360 0.335 0.118 0.875 0.199 0.455 0.248 0.444 0.208 6.090 0.261 0.098 0.217 1.386 2.320 0.094 0.060 667 chr18 3407256 3416179 + 0 NA promoter-TSS (NM_174886) promoter-TSS (NM_174886) -208 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 1.187 0.111 1.724 1.400 2.287 0.173 2.336 0.308 5.055 2.131 2.326 1.508 0.686 0.806 6.902 1.047 1.220 1.302 0.713 0.062 0.781 0.512 0.430 3.499 0.475 0.209 0.131 0.879 0.125 2.385 0.233 0.486 1.278 3.128 0.073 0.671 4.354 1.124 0.293 0.019 0.052 0.017 276 chr11 129184303 129195915 + 0 NA Intergenic Intergenic -55772 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.444 0.141 0.374 0.526 1.218 0.027 0.678 1.450 8.501 2.439 2.086 1.408 0.041 0.854 1.000 2.265 0.258 0.143 0.897 0.024 0.308 0.156 0.152 0.291 0.207 0.062 0.033 1.835 0.234 1.458 0.103 0.176 8.173 1.994 0.144 2.858 8.040 0.064 0.110 0.019 0.025 0.009 715 chr19 38787222 38798498 + 0 NA Intergenic AluSx|SINE|Alu -1941 NM_001317801 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 4.889 2.317 2.410 2.343 4.757 3.427 5.484 2.346 3.854 2.420 2.230 2.570 2.428 2.564 2.666 4.356 2.764 0.906 0.062 0.071 3.982 4.865 2.171 0.660 8.467 12.961 5.702 2.685 2.316 7.448 3.195 1.313 1.516 8.498 5.338 1.989 5.527 1.848 2.440 1.403 2.288 2.147 196 chr11 736107 749167 + 0 NA Intergenic Intergenic -4795 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 1.478 2.273 2.496 0.611 1.707 0.804 1.251 0.748 2.716 1.618 1.629 0.361 0.368 0.838 2.440 2.086 0.482 1.230 0.233 0.357 1.380 1.971 0.721 2.326 1.567 1.922 0.890 0.442 2.410 1.954 0.835 0.967 1.439 2.033 1.329 1.001 2.446 1.209 0.635 0.621 0.259 0.124 83 chr1 153889304 153904671 + 0 NA Intergenic Intergenic -1536 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding 1.032 1.310 0.423 0.395 1.310 0.973 0.970 0.561 10.396 7.012 0.926 0.722 0.791 0.926 1.078 1.095 0.499 1.302 0.880 0.822 0.847 0.760 0.673 1.207 1.638 1.076 0.609 0.501 0.991 1.017 1.330 2.777 2.864 1.168 1.014 0.552 0.841 3.220 1.319 0.912 0.558 0.311 684 chr19 3134810 3143755 + 0 NA intron (NM_002068, intron 1 of 6) intron (NM_002068, intron 1 of 6) 3252 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 0.352 1.239 0.028 1.546 3.145 0.078 0.783 1.088 2.171 0.737 0.348 0.468 1.091 3.873 0.940 2.824 0.236 0.398 0.087 0.015 2.318 2.198 0.082 0.460 3.156 1.697 0.623 0.659 3.544 0.337 0.457 0.060 0.977 2.109 0.397 0.643 0.166 0.859 2.859 2.235 0.097 0.125 155 chr10 3933856 3945084 + 0 NA Intergenic Arthur1|DNA|hAT-Tip100 63328 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 0.306 0.181 0.008 0.691 0.520 0.582 0.498 0.825 0.418 0.166 0.404 0.182 0.094 0.752 0.169 0.896 0.068 0.494 0.018 0.099 0.838 0.335 0.053 0.226 0.163 0.194 0.139 0.156 0.152 0.703 0.366 2.964 0.664 0.399 0.214 0.413 1.036 1.170 0.945 0.153 0.248 0.179 290 chr12 8111559 8143905 + 0 NA Intergenic AluSx3|SINE|Alu -38840 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 0.139 0.090 4.481 0.126 0.343 1.503 0.415 0.251 0.804 0.225 0.646 0.221 0.283 0.248 1.520 0.888 0.754 0.212 0.037 0.566 0.506 0.297 0.431 1.563 0.880 0.174 0.147 0.182 2.355 1.909 1.136 0.258 0.544 0.258 0.829 0.090 0.782 3.809 0.405 0.390 1.839 1.208 203 chr11 12743064 12751546 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 51336 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 2.564 0.875 5.025 1.115 2.898 1.091 1.820 2.370 5.984 3.461 3.758 1.271 0.599 1.048 2.240 2.959 0.863 1.556 1.082 0.036 1.279 0.637 0.234 1.427 0.556 0.348 0.230 1.450 0.331 2.336 0.338 0.159 1.321 3.640 0.758 1.451 2.132 0.474 0.816 0.715 0.027 0.042 1270 chr8 116421023 116468563 + 0 NA intron (NM_001330599, intron 4 of 5) intron (NM_001330599, intron 4 of 5) 235446 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 0.080 0.210 0.037 0.164 0.298 0.034 0.062 0.022 0.337 0.086 0.082 0.259 0.159 0.105 0.162 0.183 0.646 0.775 0.031 4.078 0.120 0.027 0.020 0.060 0.088 0.046 0.036 0.014 0.671 0.055 0.437 0.015 0.150 0.128 0.033 0.042 0.097 0.047 0.284 0.193 0.013 0.011 958 chr3 128897175 128906519 + 0 NA intron (NM_001127192, intron 1 of 4) AluSx3|SINE|Alu 963 NM_001127195 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 5.119 2.440 0.476 0.701 2.290 1.741 4.269 1.451 5.712 3.800 3.119 1.300 1.031 2.208 2.375 4.336 1.460 2.180 1.386 2.192 3.510 4.530 1.582 3.015 4.032 3.022 1.361 1.637 3.015 2.025 4.106 2.069 3.774 2.990 6.290 1.439 1.478 4.013 2.840 1.295 1.510 0.937 957 chr3 127307596 127318937 + 0 NA Intergenic HERV16-int|LTR|ERVL -3664 NR_073377 131601 Hs.6418 NM_016372 ENSG00000163870 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein adipocyte associated 1 protein-coding 3.714 2.156 0.881 0.746 2.609 2.667 3.956 1.173 4.003 1.800 1.793 0.816 0.751 1.822 1.293 2.549 0.784 1.184 0.673 0.896 2.177 2.324 1.699 2.452 6.771 3.283 1.636 1.159 2.329 1.922 3.034 2.320 2.689 3.752 2.392 1.120 2.136 3.930 1.256 0.848 0.823 0.495 785 chr2 85828683 85848011 + 0 NA promoter-TSS (NM_001256727) promoter-TSS (NM_001256727) 832 NM_001013649 388969 Hs.516159 NM_001013649 ENSG00000168887 C2orf68 HCRCN81 chromosome 2 open reading frame 68 protein-coding 1.106 1.685 1.565 0.582 1.738 1.280 0.956 0.288 2.561 1.906 3.965 0.564 0.620 0.694 2.823 1.225 0.721 1.731 0.477 0.602 0.917 0.767 0.879 0.978 1.194 1.311 0.783 0.476 0.898 1.749 1.936 1.162 1.080 2.106 1.626 0.704 1.094 2.312 0.940 0.778 0.492 0.290 612 chr17 41853980 41857092 + 0 NA intron (NM_004090, intron 1 of 2) intron (NM_004090, intron 1 of 2) 832 NM_004090 1845 Hs.181046 NM_004090 ENSG00000108861 DUSP3 VHR dual specificity phosphatase 3 protein-coding 4.198 4.596 2.464 1.154 5.409 6.112 3.015 0.814 5.753 5.828 3.436 0.705 1.521 2.376 1.914 2.161 2.258 1.629 1.000 2.838 1.536 2.233 4.438 2.610 5.332 3.238 1.178 1.586 3.088 6.604 3.479 2.901 2.970 11.113 2.596 1.586 3.627 6.717 2.165 1.912 2.826 2.096 362 chr12 124863518 124882642 + 0 NA intron (NM_001077261, intron 18 of 47) intron (NM_001077261, intron 18 of 47) -51292 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 2.584 2.268 0.049 1.240 2.143 3.126 0.654 0.492 7.585 3.568 2.411 1.670 1.789 1.907 2.539 4.592 0.989 1.396 0.294 0.058 0.984 0.934 0.812 3.506 6.083 6.666 2.332 1.306 0.793 4.668 2.828 1.029 2.411 2.513 0.674 0.742 0.718 3.314 0.720 4.081 2.518 1.316 1034 chr5 10300676 10319444 + 0 NA Intergenic AluJb|SINE|Alu -1892 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 0.181 0.257 0.043 2.064 3.186 0.574 1.168 0.898 3.383 0.698 1.677 0.835 0.221 0.640 1.137 4.558 1.508 1.742 0.106 0.207 1.728 1.143 0.232 1.624 1.281 0.411 0.332 0.373 0.149 0.603 1.092 2.833 2.252 1.956 1.193 1.470 1.992 1.766 1.439 0.443 0.218 0.144 906 chr22 19465577 19468173 + 0 NA promoter-TSS (NM_001178010) promoter-TSS (NM_001178010) -137 NM_001035247 7353 Hs.474213 NM_005659 ENSG00000070010 UFD1L UFD1 ubiquitin fusion degradation 1 like (yeast) protein-coding 7.970 5.686 11.742 2.164 6.647 5.739 8.324 3.581 17.376 9.013 6.773 3.310 2.199 3.575 3.527 2.510 2.552 3.535 2.236 3.478 2.076 3.249 3.223 5.586 7.107 5.989 2.278 3.282 4.887 3.354 5.463 3.686 5.063 8.782 4.332 3.002 4.939 5.629 5.228 3.551 2.005 1.282 425 chr14 75076851 75089046 + 0 NA Intergenic MIRb|SINE|MIR -3914 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 2.765 1.963 0.161 1.399 1.407 2.461 2.740 3.277 3.860 1.323 1.298 2.566 3.712 1.310 6.169 3.580 0.562 3.068 0.025 0.023 3.862 3.010 0.170 0.722 6.294 1.562 0.780 0.710 11.511 1.580 7.612 0.136 1.349 0.670 1.598 0.511 0.312 2.674 1.755 5.211 7.575 5.743 803 chr2 173108220 173120340 + 0 NA Intergenic MER57D|LTR|ERV1 146546 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 1.501 0.614 0.031 3.053 3.618 1.108 2.448 2.307 2.240 0.477 0.598 4.193 4.295 1.941 2.188 6.237 0.714 1.521 0.611 0.046 2.331 1.389 0.084 0.422 10.232 9.970 3.690 3.064 3.085 0.188 4.073 0.347 0.622 2.358 1.518 0.555 0.534 2.677 2.520 4.302 0.931 0.977 841 chr20 17535552 17554187 + 0 NA intron (NM_001278608, intron 1 of 9) AluJb|SINE|Alu 4996 NM_001278608 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 1.176 4.739 0.782 0.610 1.558 1.621 1.019 2.427 6.434 3.216 5.580 3.366 1.107 2.026 3.600 3.624 1.603 2.050 1.319 1.316 4.606 4.227 1.089 4.301 3.476 2.194 1.086 2.439 4.116 3.303 1.888 1.440 2.571 1.868 5.986 1.214 6.477 1.594 2.791 2.515 1.669 1.327 774 chr2 46523225 46566220 + 0 NA intron (NM_001430, intron 1 of 15) Tigger1|DNA|TcMar-Tigger 20181 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.378 2.041 0.107 0.547 1.233 1.179 0.838 0.310 7.575 4.184 1.838 0.629 0.689 0.950 1.570 1.425 0.946 0.148 0.685 0.019 1.665 1.136 0.899 1.801 2.021 0.263 0.182 0.593 0.791 2.390 0.135 2.475 2.127 0.678 0.390 0.973 1.425 1.336 1.051 1.094 0.110 0.068 832 chr2 242030338 242043310 + 0 NA non-coding (NR_028050, exon 2 of 5) non-coding (NR_028050, exon 2 of 5) 4923 NM_001330179 130916 Hs.159556 NM_182501 ENSG00000122085 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 0.742 0.737 0.178 0.277 0.955 0.335 0.745 0.350 2.643 1.433 2.978 0.445 0.713 0.801 1.305 2.465 0.236 0.510 0.802 0.235 2.634 2.884 0.483 1.347 0.560 0.683 0.461 0.692 0.440 2.892 1.095 0.968 3.184 0.669 1.042 0.434 2.745 1.108 0.656 0.579 0.295 0.215 174 chr10 103873168 103894821 + 0 NA Intergenic AluSg|SINE|Alu -3764 NM_001113407 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding 0.946 4.228 0.401 0.449 1.319 1.586 1.611 1.099 4.408 2.747 1.935 0.498 0.758 1.161 0.802 2.160 0.905 1.821 1.220 1.917 1.080 0.999 1.510 1.723 2.608 1.844 0.981 0.857 0.833 2.376 2.944 1.082 1.264 1.925 2.794 1.129 0.952 2.688 1.123 1.202 1.266 0.786 736 chr19 47285333 47306109 + 0 NA Intergenic Intergenic -3879 NM_005628 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 2.633 2.960 0.466 0.456 1.628 0.770 1.719 0.666 nan 2.854 4.502 0.688 1.352 1.212 2.849 1.558 1.759 2.680 0.737 0.704 0.659 0.679 1.101 1.359 3.118 1.626 0.773 0.551 1.424 2.935 1.217 1.612 1.193 1.538 1.515 1.559 1.640 1.534 0.768 1.017 2.310 1.993 1031 chr5 1322799 1331173 + 0 NA intron (NM_030782, intron 9 of 16) intron (NM_030782, intron 9 of 16) -17494 NR_039662 100616235 NR_039662 ENSG00000263670 MIR4457 mir-4457 microRNA 4457 ncRNA 0.103 2.146 5.965 0.386 1.302 2.999 0.967 0.220 3.224 1.733 2.282 0.071 0.296 0.207 1.450 1.170 1.141 1.905 0.132 2.136 1.152 1.423 4.932 0.278 10.663 16.467 6.203 1.682 0.701 2.068 0.298 0.936 3.007 3.214 0.708 0.962 2.097 0.661 2.121 0.661 6.428 5.313 1049 chr5 45015338 45061400 + 0 NA Intergenic Intergenic 229342 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 0.105 0.104 0.011 0.029 0.155 0.039 0.121 0.025 0.214 0.126 0.112 0.054 0.186 0.026 0.111 0.094 0.019 0.233 0.039 3.459 0.050 0.019 0.003 0.070 0.038 0.016 0.020 0.025 0.139 0.027 0.043 0.040 0.040 0.113 0.030 0.011 0.050 0.033 0.043 0.028 0.019 0.022 624 chr17 46644067 46699693 + 0 NA promoter-TSS (NM_002147) promoter-TSS (NM_002147) -777 NM_002147 3215 Hs.654456 NM_002147 ENSG00000120075 HOXB5 HHO.C10|HOX2|HOX2A|HU-1|Hox2.1 homeobox B5 protein-coding 5.405 0.704 0.540 0.388 0.963 0.518 0.584 0.611 nan 2.314 1.063 0.074 0.594 0.340 1.306 0.378 0.177 1.466 2.350 4.964 0.885 0.762 0.863 1.654 5.389 2.783 1.433 0.488 2.418 3.512 5.236 0.328 0.120 0.544 2.637 0.121 1.036 1.860 0.134 0.962 10.842 8.557 954 chr3 71626832 71635951 + 0 NA intron (NM_001012505, intron 1 of 6) CpG-18683 1513 NM_001244808 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 5.446 4.549 1.847 1.047 3.116 3.056 3.504 0.748 10.621 7.803 4.029 2.083 1.983 4.289 1.679 2.657 3.481 2.412 2.827 3.040 2.060 2.702 0.145 0.029 5.353 3.098 1.534 1.619 2.883 2.169 0.938 2.520 3.270 2.411 10.808 1.796 2.141 1.326 4.425 4.674 0.057 0.056 1004 chr4 75397233 75413416 + 0 NA Intergenic Intergenic -75267 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 3.525 0.507 0.131 1.001 2.194 0.397 2.690 2.914 2.191 1.234 2.198 2.500 1.385 2.387 0.202 1.619 0.170 0.500 0.086 0.094 1.372 0.570 0.027 0.340 0.744 0.045 0.053 1.808 0.706 0.717 0.106 0.785 0.476 2.100 0.343 0.432 0.144 0.136 0.559 0.198 0.043 0.025 751 chr19 56159110 56169238 + 0 NA 3' UTR (NM_013301, exon 6 of 6) 3' UTR (NM_013301, exon 6 of 6) -1242 NM_007279 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 5.784 5.465 2.736 0.786 3.368 5.009 3.267 0.959 5.173 3.706 4.066 1.652 2.121 4.731 3.557 2.479 1.937 3.143 2.723 2.382 1.026 1.328 4.283 3.076 5.727 2.952 0.941 2.049 1.926 6.041 3.783 3.199 1.995 3.576 3.165 2.654 2.370 5.281 3.302 1.866 1.973 1.282 980 chr3 185814885 185828684 + 0 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 5117 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 1.292 1.227 0.701 0.480 1.627 1.114 1.376 0.585 3.246 2.051 1.317 0.649 0.907 0.822 1.482 1.794 0.360 1.335 0.500 0.883 3.037 2.127 0.897 1.114 2.916 1.976 0.994 0.395 2.198 1.431 1.866 1.451 1.166 1.700 3.700 0.680 0.114 0.738 0.872 0.592 0.893 0.531 659 chr17 79847438 79857555 + 0 NA exon (NM_001289418, exon 2 of 3) exon (NM_001289418, exon 2 of 3) 2693 NM_001289416 51529 Hs.534456 NM_016476 ENSG00000141552 ANAPC11 APC11|Apc11p|HSPC214 anaphase promoting complex subunit 11 protein-coding 1.713 3.295 0.392 1.204 2.792 3.736 1.835 0.741 5.047 2.537 1.927 1.802 1.380 0.958 1.131 3.809 0.831 1.966 0.589 1.089 0.995 1.191 1.392 2.887 3.104 1.840 0.771 0.979 2.996 2.907 3.297 1.185 2.030 4.590 2.577 1.342 1.587 3.666 1.195 3.311 1.747 1.123 614 chr17 42294459 42300421 + 0 NA promoter-TSS (NM_001076684) promoter-TSS (NM_001076684) -399 NM_014233 7343 Hs.89781 NM_014233 ENSG00000108312 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 9.730 9.584 2.618 1.462 6.417 5.722 5.655 1.187 nan 9.910 6.728 1.301 2.396 3.418 5.139 4.420 3.128 3.672 2.417 6.351 3.876 5.975 5.534 9.064 12.587 5.836 2.939 3.157 7.996 12.848 6.520 5.363 6.290 7.300 4.998 2.798 5.785 13.913 4.997 4.465 3.538 2.478 470 chr15 90538952 90553789 + 0 NA intron (NM_198526, intron 1 of 4) AluSx3|SINE|Alu 1647 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding 0.681 2.794 0.096 0.919 2.255 0.728 1.681 1.062 9.302 6.321 2.162 1.221 0.333 2.469 3.766 2.149 1.772 0.915 0.982 0.917 1.283 1.193 0.957 0.700 1.044 0.809 0.537 0.968 2.507 2.621 1.226 0.386 6.690 2.311 0.748 3.079 3.767 1.166 0.841 0.709 0.982 0.709 691 chr19 7450956 7465743 + 0 NA Intergenic FLAM_C|SINE|Alu -1650 NM_015318 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 1.659 0.538 2.633 0.749 2.426 2.194 1.104 1.376 3.252 1.758 1.539 0.978 0.536 1.629 1.721 2.959 0.460 0.440 0.318 0.234 0.904 0.601 1.120 0.159 3.448 2.955 1.289 1.502 0.514 1.117 1.262 0.616 1.614 3.848 2.324 0.835 1.873 1.322 1.694 1.631 1.231 0.576 107 chr1 156229918 156234888 + 0 NA intron (NM_001323617, intron 14 of 22) intron (NM_001323617, intron 14 of 22) -14495 NM_001272106 79957 Hs.235873 NM_024897 ENSG00000160781 PAQR6 PRdelta progestin and adipoQ receptor family member 6 protein-coding 0.525 0.362 0.000 1.681 1.746 0.175 1.559 0.387 0.268 0.096 0.156 1.812 5.081 0.659 0.077 4.171 0.039 0.621 0.100 0.098 0.960 0.678 0.164 0.131 0.260 0.076 0.104 0.154 0.723 0.147 0.973 0.047 0.160 2.031 5.125 0.059 0.049 0.528 4.081 1.632 0.614 0.306 563 chr17 8052691 8068514 + 0 NA Intergenic MIR|SINE|MIR -4849 NM_002616 5187 Hs.445534 NM_002616 ENSG00000179094 PER1 PER|RIGUI|hPER period circadian clock 1 protein-coding 0.871 2.060 0.969 0.574 2.000 3.650 0.957 0.654 4.035 2.405 2.081 0.606 0.671 1.047 0.628 1.050 0.731 1.150 1.602 2.074 0.664 0.566 1.016 2.584 3.297 1.224 0.674 0.823 0.588 4.080 3.963 1.259 1.024 6.359 2.698 0.981 1.220 5.465 1.175 1.105 0.986 0.508 858 chr20 44621049 44625384 + 0 NA Intergenic AluSp|SINE|Alu -14331 NM_004994 4318 Hs.297413 NM_004994 ENSG00000100985 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 protein-coding 2.181 0.689 7.585 1.217 1.782 0.696 1.387 1.040 5.229 1.496 5.812 2.159 0.246 0.905 2.224 1.466 3.116 0.106 0.048 0.081 0.745 0.348 0.050 0.509 5.091 0.014 0.036 2.972 0.252 0.932 0.278 0.209 2.096 3.960 0.614 1.325 3.057 0.771 1.384 1.313 0.027 0.012 498 chr16 12006506 12012015 + 0 NA exon (NM_001130006, exon 1 of 15) exon (NM_001130006, exon 1 of 15) 565 NM_001130006 2935 Hs.528780 NM_002094 ENSG00000103342 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 6.605 4.736 6.159 1.274 4.221 3.136 4.673 1.178 9.331 6.223 4.000 1.323 1.077 3.180 5.058 3.718 3.062 1.772 2.909 0.762 3.043 3.515 2.022 2.333 4.413 2.184 1.333 2.383 2.232 3.455 2.410 5.454 4.708 4.812 3.914 1.435 2.244 2.961 4.433 1.873 1.484 1.130 777 chr2 61686521 61699792 + 0 NA intron (NM_014709, intron 1 of 79) L1MA5A|LINE|L1 4693 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 1.426 2.227 0.569 0.757 2.847 3.067 1.714 0.446 4.165 3.189 1.704 0.727 0.908 0.796 1.656 1.669 1.109 2.699 0.468 1.617 1.416 1.681 1.311 2.701 3.362 3.825 1.721 0.745 1.627 3.331 2.910 1.528 1.435 3.153 1.472 1.344 1.089 3.038 1.196 1.140 1.020 0.706 1009 chr4 83315163 83329519 + 0 NA Intergenic Intergenic -27192 NM_001003810 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 0.386 0.211 0.008 0.951 2.125 0.035 1.270 1.557 4.277 2.462 1.034 0.615 0.148 1.217 0.625 2.849 0.092 0.465 0.056 0.023 0.300 0.160 0.047 0.041 0.772 0.092 0.038 1.419 0.480 0.062 0.850 0.547 0.480 2.506 0.033 0.230 0.259 0.414 0.128 0.037 0.008 248 chr11 72431747 72476249 + 0 NA intron (NM_001040118, intron 1 of 34) L2a|LINE|L2 9436 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 0.312 1.025 0.399 0.357 0.768 0.555 0.247 0.336 nan 2.111 0.732 0.438 0.299 0.981 1.232 1.030 0.108 0.410 0.354 0.072 0.863 0.565 0.499 0.332 2.145 1.286 0.616 0.715 0.674 0.973 0.684 0.641 1.272 0.911 0.980 0.504 0.717 1.364 0.370 0.618 0.292 0.238 1335 chrX 39953378 39970063 + 0 NA intron (NM_001123384, intron 1 of 13) CpG-27857 -5001 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 1.733 2.288 1.626 0.376 1.331 3.091 3.288 0.844 3.873 1.919 2.373 0.611 0.767 1.069 2.227 1.562 1.057 1.153 1.749 2.051 1.208 1.386 1.138 2.506 3.892 2.538 1.341 1.192 1.769 5.410 4.189 1.926 2.522 1.852 1.868 1.056 1.790 3.705 0.832 1.378 1.212 0.742 438 chr14 105880905 105889180 + 0 NA non-coding (NR_125384, exon 2 of 3) non-coding (NR_125384, exon 2 of 3) 1034 NR_125384 100507437 Hs.676548 NR_125384 ENSG00000251602 LOC100507437 - uncharacterized LOC100507437 ncRNA 1.638 1.418 0.404 0.274 0.880 2.887 0.872 0.418 5.034 3.075 2.838 0.724 0.570 0.581 1.098 1.088 0.684 0.909 0.817 1.891 1.748 1.911 1.089 2.207 1.702 2.294 1.252 0.731 0.676 3.511 6.179 0.783 2.570 0.690 2.531 0.797 1.862 3.795 0.875 1.886 0.960 0.412 710 chr19 35756990 35761305 + 0 NA promoter-TSS (NM_003367) promoter-TSS (NM_003367) -734 NM_001321150 7392 Hs.454534 NM_003367 ENSG00000105698 USF2 FIP|bHLHb12 upstream transcription factor 2, c-fos interacting protein-coding 4.915 7.205 3.148 1.146 5.672 5.759 4.757 0.709 10.198 6.195 5.467 0.608 1.562 1.111 4.171 1.801 3.168 2.925 2.667 2.312 3.463 5.955 5.498 2.738 6.010 5.518 2.906 2.402 3.371 13.142 15.400 6.072 3.550 4.456 3.196 2.112 4.124 7.537 2.278 2.006 1.455 0.829 768 chr2 28645014 28677707 + 0 NA Intergenic Intergenic -43821 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 0.247 0.669 0.042 0.881 0.917 0.265 0.742 0.525 4.602 0.959 0.947 0.671 0.394 0.700 1.270 1.607 0.644 0.624 0.039 0.025 0.585 0.305 0.100 0.234 0.792 0.122 0.065 1.310 1.007 0.589 0.307 0.314 1.040 0.746 0.485 0.879 1.380 0.302 0.474 0.492 0.107 0.107 80 chr1 151800938 151822578 + 0 NA intron (NM_001136003, intron 1 of 1) intron (NM_001136003, intron 1 of 1) 813 NR_024237 100132111 Hs.697059 NR_024237 LOC100132111 - uncharacterized LOC100132111 ncRNA 0.967 0.118 0.023 1.017 1.192 0.178 2.184 1.355 28.971 15.141 0.642 1.845 1.517 0.531 0.756 2.305 0.159 0.298 0.646 0.019 1.286 0.904 0.139 0.471 0.157 0.131 0.094 0.117 0.106 0.518 0.135 10.489 11.922 2.413 0.115 2.396 7.255 0.504 0.754 0.089 1.038 0.844 949 chr3 62583948 62598796 + 0 NA intron (NM_183394, intron 6 of 27) MIR|SINE|MIR -232182 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 0.944 0.624 0.130 0.697 1.638 0.330 3.470 5.187 2.409 1.336 1.416 1.457 1.059 2.437 0.216 4.440 0.032 0.180 0.040 0.019 1.848 1.324 0.025 0.113 0.093 1.265 0.724 1.911 7.971 0.038 0.209 0.016 0.166 2.271 0.835 0.425 0.022 0.032 1.206 1.122 0.334 0.242 845 chr20 30421473 30434476 + 0 NA Intergenic Intergenic 5446 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 1.221 0.239 0.029 0.363 0.399 0.105 0.182 0.106 nan 0.272 0.211 0.569 0.769 0.116 0.174 0.387 0.396 4.462 0.062 0.150 1.814 0.857 0.229 0.327 0.397 0.304 0.165 0.265 1.229 0.713 3.547 0.060 0.180 0.341 1.087 0.114 0.065 0.345 0.498 0.451 0.040 0.023 1010 chr4 106471163 106478715 + 0 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) 1162 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 2.050 0.126 0.050 0.175 0.609 0.050 1.228 0.127 2.657 0.839 4.653 2.057 0.172 2.222 0.279 0.294 0.050 0.171 0.066 0.543 0.354 0.019 0.050 0.061 0.024 0.577 0.094 0.360 0.066 3.950 2.936 0.560 0.060 0.692 4.144 0.016 0.095 0.031 0.015 0.007 1071 chr5 133798349 133823525 + 0 NA Intergenic L1ME4a|LINE|L1 -31306 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 0.295 0.703 0.335 0.349 0.528 0.759 0.499 0.286 1.712 0.697 0.713 0.465 0.337 0.416 0.314 0.847 0.280 0.513 0.169 0.089 0.470 0.597 0.510 0.972 0.713 0.778 0.303 0.289 0.608 1.154 4.694 0.612 0.540 0.662 0.423 0.247 0.143 0.743 0.295 0.647 0.652 0.415 982 chr3 187660356 187674373 + 0 NA Intergenic Intergenic 26831 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 0.179 0.151 0.038 0.188 0.234 0.189 0.271 0.192 3.004 0.494 0.308 0.316 0.017 0.242 4.482 0.233 0.098 0.376 0.078 0.010 3.587 2.053 0.058 0.619 0.143 0.068 0.028 0.126 0.261 1.040 0.088 0.511 2.048 0.197 0.060 0.599 0.257 0.038 0.118 0.081 0.016 0.007 983 chr3 189498110 189546403 + 0 NA intron (NM_001329146, intron 1 of 10) MER45A|DNA|hAT-Tip100 14807 NM_001329146 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 0.262 0.108 0.532 0.291 0.304 0.066 0.441 0.246 2.516 1.022 0.983 0.495 0.039 0.322 0.349 0.618 0.167 0.237 0.020 0.006 0.677 0.214 0.014 0.069 0.241 0.045 0.032 0.404 0.110 0.177 0.162 0.026 0.586 0.148 0.169 0.280 0.093 0.150 0.347 0.047 0.012 0.012 1045 chr5 43120139 43123266 + 0 NA promoter-TSS (NM_001330714) promoter-TSS (NM_001330714) 4 NM_001330717 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 5.050 5.099 2.419 3.956 12.499 5.007 9.276 2.703 16.533 12.789 9.792 2.386 2.672 2.975 7.893 6.064 3.950 4.289 3.208 5.643 5.415 6.771 3.624 5.598 5.503 7.624 4.091 3.950 2.683 5.987 7.937 6.521 5.247 21.382 6.798 3.740 4.820 14.879 6.728 2.369 4.463 3.194 1158 chr6 114336626 114340607 + 0 NA intron (NR_125845, intron 4 of 9) HERVH-int|LTR|ERV1 45425 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 0.395 0.387 0.094 0.552 1.581 0.894 0.204 2.322 0.428 0.240 0.210 0.615 2.496 0.146 0.249 1.040 0.025 1.826 1.361 0.146 0.120 1.341 9.186 3.299 0.771 0.140 0.061 0.231 0.079 0.339 1.679 0.211 0.152 0.418 0.161 0.893 0.019 0.853 0.368 1092 chr5 175959925 175972555 + 0 NA Intergenic Intergenic -1819 NM_014901 22838 Hs.434888 NM_014901 ENSG00000146083 RNF44 - ring finger protein 44 protein-coding 2.127 2.668 0.470 0.540 1.917 2.026 2.786 1.048 4.359 3.321 1.951 0.939 1.270 1.821 1.999 2.230 0.969 1.390 1.707 1.824 2.137 2.431 1.785 1.902 2.561 3.629 1.814 1.940 2.675 3.338 4.600 3.231 2.378 2.385 3.171 1.912 1.139 4.317 1.490 1.054 1.945 1.526 165 chr10 49585098 49610457 + 0 NA intron (NM_139049, intron 3 of 13) L2a|LINE|L2 -11878 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 0.506 0.169 2.961 0.127 0.178 0.045 0.123 0.128 0.165 0.048 0.078 0.140 0.284 0.120 0.183 0.350 0.141 0.261 0.047 0.005 0.053 0.037 0.035 0.071 0.113 0.036 0.028 0.049 0.116 0.116 0.120 0.028 0.050 0.076 0.242 0.126 0.125 0.043 0.163 0.219 0.043 0.048 380 chr13 73958248 74011991 + 0 NA Intergenic Intergenic -153262 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.928 0.109 0.247 0.254 0.330 0.074 0.267 0.492 8.567 2.690 0.779 0.646 0.085 0.769 0.611 0.414 0.091 0.290 0.037 0.016 0.668 0.355 0.034 0.081 0.168 0.048 0.039 0.545 0.141 0.264 0.072 0.101 0.682 0.150 0.040 0.755 0.523 0.024 0.160 0.116 0.004 0.006 640 chr17 73069643 73096488 + 0 NA promoter-TSS (NM_001271765) promoter-TSS (NM_001271765) -757 NM_001271765 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 2.846 2.574 0.808 0.573 1.025 0.958 2.800 2.137 4.574 1.974 1.658 1.469 0.589 2.244 2.828 3.423 1.158 1.530 0.601 0.042 2.358 2.173 0.895 4.941 4.007 0.857 0.423 1.303 0.874 6.320 0.866 0.750 3.693 3.208 0.998 0.710 2.400 2.019 1.603 0.704 2.499 1.696 758 chr2 16104165 16118781 + 0 NA Intergenic Intergenic -29102 NM_001329968 10408 Hs.651453 NM_006316 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand protein-coding 5.343 0.037 0.017 0.039 0.036 0.026 0.051 0.901 0.155 0.204 0.010 0.024 0.029 0.066 0.049 0.059 0.044 0.095 0.038 0.034 0.040 0.084 0.143 0.037 0.027 0.037 0.111 0.117 0.043 0.022 0.085 0.039 0.043 0.073 0.101 0.087 0.022 0.046 0.024 0.014 893 chr21 36506513 36524844 + 0 NA Intergenic L1ME4a|LINE|L1 -94083 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 5.060 0.078 0.075 0.309 0.593 0.114 0.921 2.058 0.459 0.225 0.665 1.874 0.983 0.417 1.937 2.482 0.410 1.293 0.028 0.015 0.419 0.241 0.061 0.053 0.714 0.210 0.154 0.527 0.316 0.133 0.946 0.052 0.508 0.416 0.407 0.454 0.334 0.070 0.577 1.222 1.307 1.157 357 chr12 120515057 120525886 + 0 NA intron (NM_207311, intron 7 of 8) AluJb|SINE|Alu 34172 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 0.431 0.460 0.252 0.369 0.226 0.786 0.319 0.152 0.567 0.192 0.261 0.178 0.116 0.290 1.393 1.179 0.168 0.409 0.127 0.256 0.606 0.395 0.452 1.702 0.425 0.263 0.165 0.086 0.361 1.502 0.545 0.559 1.764 0.467 0.876 0.930 3.909 0.809 0.154 0.084 0.253 0.101 1121 chr6 32152252 32166202 + 0 NA exon (NM_022107, exon 8 of 8).4 exon (NM_022107, exon 8 of 8).4 -1264 NM_002586 5089 Hs.509545 NM_002586 ENSG00000204304 PBX2 G17|HOX12|PBX2MHC PBX homeobox 2 protein-coding 2.670 3.804 1.092 0.640 2.016 4.797 1.094 0.795 4.878 2.507 2.561 1.102 1.159 1.007 1.753 3.096 0.714 1.593 1.240 3.168 1.991 2.131 1.205 2.036 3.230 3.729 1.692 0.950 3.675 1.962 5.693 1.861 1.385 3.092 2.915 0.647 0.977 4.682 1.865 2.719 2.074 1.413 1321 chr9 130557339 130567687 + 0 NA Intergenic Intergenic -2624 NM_001288803 2356 Hs.335084 NM_004957 ENSG00000136877 FPGS - folylpolyglutamate synthase protein-coding 1.729 1.901 0.275 1.044 2.648 1.129 5.619 1.476 4.608 2.008 2.542 1.074 0.897 2.131 2.262 1.922 0.867 1.149 0.377 0.375 2.266 2.593 0.904 1.199 1.815 1.613 0.722 1.393 1.134 1.561 1.580 0.725 2.923 2.570 1.036 0.767 2.109 1.561 2.072 0.909 0.778 0.466 1088 chr5 172157981 172169231 + 0 NA Intergenic Intergenic -18900 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 1.037 0.249 0.453 0.904 1.211 0.129 0.459 1.582 1.193 0.172 0.176 0.207 0.303 1.606 0.778 1.554 1.392 0.212 0.152 0.086 1.728 1.471 0.237 0.139 0.974 0.298 0.207 0.264 7.600 0.452 1.107 0.529 0.540 1.793 0.365 0.774 0.550 0.224 0.346 0.476 2.078 1.302 985 chr3 189653239 189679738 + 0 NA Intergenic Intergenic 118777 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 0.959 0.146 0.105 1.189 1.896 1.415 2.275 1.831 5.729 3.216 1.921 1.751 0.290 2.300 1.570 2.377 0.792 0.835 0.034 0.026 2.353 0.947 0.031 2.256 2.905 0.123 0.123 2.773 0.923 0.605 0.492 0.236 1.974 2.118 1.147 0.994 0.650 1.297 1.557 0.215 0.030 0.023 392 chr13 115045361 115049031 + 0 NA exon (NM_080687, exon 1 of 9) exon (NM_080687, exon 1 of 9) 137 NM_080687 65110 Hs.533855 NM_023011 ENSG00000169062 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 1.902 5.808 3.304 5.155 10.709 3.473 2.181 1.437 13.511 11.768 3.888 2.423 2.218 2.346 7.626 3.165 1.253 1.810 2.604 5.933 3.290 4.798 1.820 5.121 16.254 6.789 2.917 2.517 5.706 4.328 4.798 3.421 3.163 11.110 4.573 1.790 6.131 6.404 4.095 5.545 3.107 2.227 709 chr19 35737639 35744873 + 0 NA exon (NM_001260490, exon 2 of 7) exon (NM_001260490, exon 2 of 7) 1697 NM_015925 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 6.424 0.539 5.438 1.528 4.118 3.386 3.173 1.181 5.685 3.719 3.880 1.561 0.115 2.326 2.947 1.699 1.873 0.013 2.123 1.841 1.003 0.870 1.533 0.036 4.130 4.195 1.834 1.678 0.140 0.529 2.935 2.289 1.615 5.909 0.787 2.604 3.368 1.762 0.960 0.744 0.024 0.042 496 chr16 11874669 11896361 + 0 NA intron (NM_014153, intron 1 of 22) intron (NM_014153, intron 1 of 22) 5599 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 3.496 1.492 9.847 0.400 1.075 2.104 1.242 0.275 5.163 1.643 1.203 0.426 0.461 1.267 0.706 1.481 2.154 0.658 1.392 0.312 1.875 1.725 1.535 0.938 2.124 1.397 0.683 0.384 1.021 1.546 1.088 1.228 1.313 1.588 1.355 0.225 0.565 1.197 0.925 0.617 0.926 0.626 570 chr17 18620344 18630267 + 0 NA promoter-TSS (NM_001037330) promoter-TSS (NM_001037330) -97 NM_001037330 147166 Hs.164324 NM_001037330 ENSG00000108448 TRIM16L TRIM70 tripartite motif containing 16-like protein-coding 1.300 3.985 0.945 1.988 2.413 4.416 1.585 1.684 4.016 2.029 5.658 4.563 1.182 3.276 8.422 4.509 2.253 4.326 0.071 0.098 3.316 4.368 0.052 12.407 10.244 2.647 1.321 1.319 6.456 8.680 1.329 1.262 4.769 2.347 2.598 5.791 3.989 1.296 2.707 6.590 1.899 1.142 817 chr2 219145485 219166247 + 0 NA intron (NM_001321436, intron 1 of 12) intron (NM_001321436, intron 1 of 12) -1141 NM_001321430 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 4.163 1.743 1.140 1.550 3.528 1.136 4.438 2.057 3.313 1.475 3.204 1.469 0.924 2.475 4.455 4.335 1.689 0.851 0.154 0.180 1.546 1.157 0.585 0.766 0.965 1.398 0.688 3.024 1.325 1.781 1.583 0.208 1.132 3.612 0.909 1.162 1.771 1.370 1.021 1.070 0.641 0.529 1259 chr8 81827388 81841302 + 0 NA Intergenic L1MB5|LINE|L1 -47329 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.150 0.499 0.112 0.027 0.109 0.073 0.312 0.068 1.408 0.256 0.567 0.391 0.050 0.369 0.922 0.195 0.409 0.641 0.072 1.594 0.947 0.026 0.093 0.106 0.165 0.028 1.534 0.185 0.502 0.070 4.800 1.371 0.118 0.047 0.219 0.137 0.025 0.102 0.186 0.037 0.018 986 chr3 189712973 189737232 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) -113651 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 0.544 0.273 0.397 0.578 1.080 3.713 1.151 0.673 0.624 0.267 0.248 1.037 0.399 0.931 0.528 2.201 0.413 1.059 0.033 2.084 0.981 0.161 4.227 0.789 0.428 0.322 0.211 2.272 0.558 0.267 0.655 0.596 0.575 1.150 0.181 0.106 0.268 1.451 0.891 0.189 0.107 52 chr1 72746310 72757716 + 0 NA Intergenic Intergenic -3736 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 3.761 1.356 0.038 0.149 0.415 5.122 0.758 0.924 0.183 0.247 0.161 0.475 0.364 0.721 0.719 0.816 0.049 1.905 0.897 0.355 0.188 0.101 0.813 0.649 1.578 0.957 0.491 0.020 2.010 0.178 1.536 0.359 0.028 0.394 0.032 0.171 0.079 0.499 0.303 0.601 3.271 2.724 348 chr12 80971564 80993440 + 0 NA intron (NM_001145026, intron 23 of 41) MamGypLTR1a|LTR|Gypsy -118906 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 0.148 0.147 0.023 0.060 0.101 0.011 0.053 0.087 0.085 0.061 0.075 0.144 0.159 0.080 0.106 0.055 0.013 1.104 0.024 0.006 0.054 0.020 0.040 0.059 0.076 0.019 0.018 0.039 7.403 0.045 0.189 0.032 0.034 0.039 0.004 0.028 0.042 0.027 0.040 0.292 0.018 0.007 209 chr11 46256912 46271695 + 0 NA Intergenic Intergenic -34886 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 0.798 3.129 0.582 0.344 0.621 1.327 0.957 1.211 4.697 2.677 1.259 0.613 1.232 0.722 1.497 3.233 0.247 1.948 0.688 2.047 1.617 1.328 0.970 1.469 3.378 4.629 1.939 0.420 4.900 1.740 2.696 3.239 0.956 0.506 4.623 0.266 0.323 2.728 2.026 2.691 1.743 1.268 1149 chr6 52969303 52996379 + 0 NA Intergenic L1MC|LINE|L1 30783 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 0.459 0.092 0.032 0.288 0.846 0.042 0.369 0.902 4.351 0.781 1.032 1.020 0.205 0.871 1.026 2.154 0.116 0.092 0.226 0.016 0.330 0.133 0.024 0.065 0.136 0.071 0.040 0.639 0.228 0.219 0.108 0.276 0.832 0.802 0.092 0.231 0.474 0.077 0.300 0.454 0.022 0.017 1000 chr4 54928440 54934705 + 0 NA promoter-TSS (NM_012110) promoter-TSS (NM_012110) -757 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 2.235 2.273 0.946 0.529 1.529 2.088 2.267 1.998 1.986 1.860 1.683 1.341 1.583 2.649 1.864 2.202 0.728 3.958 1.426 0.484 1.727 1.541 1.602 0.740 3.181 5.931 2.758 1.324 4.925 1.377 1.670 1.284 1.334 1.546 3.919 0.684 1.079 3.037 1.817 1.706 0.423 0.355 1244 chr8 59570569 59576794 + 0 NA Intergenic LTR47A|LTR|ERVL -1277 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1.471 3.171 5.131 0.761 2.237 4.411 1.965 1.119 5.451 3.843 1.675 0.941 1.519 2.284 2.199 1.162 0.875 1.791 1.766 2.410 2.300 3.781 1.115 3.483 4.140 5.643 1.987 2.568 2.452 4.695 6.489 1.735 1.624 3.149 3.656 2.431 0.927 2.752 1.857 1.154 2.667 2.671 90 chr1 154697958 154704608 + 0 NA intron (NM_002249, intron 4 of 7) intron (NM_002249, intron 4 of 7) -100827 NM_001025107 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 0.087 0.207 0.313 0.238 0.265 0.071 0.302 3.450 0.993 0.352 0.373 1.263 0.914 0.264 2.071 4.350 0.458 0.041 6.506 7.063 0.066 13.938 0.434 0.971 0.316 0.322 0.288 0.629 0.043 1.447 5.360 0.224 0.125 3.733 0.348 0.512 0.425 0.734 0.009 0.022 844 chr20 30247311 30337773 + 0 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -16768 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 4.078 1.963 1.709 0.955 2.488 3.736 3.052 1.782 nan 3.259 3.455 1.370 1.432 1.581 1.705 2.094 1.534 12.326 0.752 0.456 4.511 4.398 0.910 0.643 2.052 2.209 0.937 1.613 12.393 3.167 1.865 2.369 0.916 3.916 2.843 1.274 1.761 0.808 1.886 2.506 3.917 3.896 10 chr1 7322214 7328536 + 0 NA intron (NM_015215, intron 5 of 22) AluSx1|SINE|Alu 479991 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 3.606 0.415 0.136 0.030 0.330 0.302 0.101 5.919 0.575 0.122 0.023 1.006 1.700 0.030 2.835 0.077 1.851 2.042 2.333 2.213 0.338 2.477 1.966 0.496 0.234 1.609 4.444 3.100 2.537 3.274 1.777 0.056 1.344 4.116 1.612 2.071 1.505 1.333 0.583 0.601 19 chr1 17864676 17933801 + 0 NA intron (NM_018125, intron 1 of 28) L2b|LINE|L2 -7810 NM_001319837 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 0.747 0.682 0.061 0.649 1.338 0.196 0.597 0.422 4.192 0.978 1.258 0.721 0.254 1.054 0.833 1.026 0.514 0.615 1.099 0.084 1.232 0.935 0.314 0.128 0.234 0.251 0.162 0.576 0.369 0.668 0.224 1.426 1.138 1.213 0.043 0.431 0.436 0.399 0.454 0.076 0.094 0.077 513 chr16 51570277 51576112 + 0 NA Intergenic Intergenic -223236 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 0.160 2.255 0.040 0.032 0.065 0.427 0.116 2.767 1.094 0.037 0.100 2.719 0.055 0.057 0.868 0.017 2.484 0.956 0.008 1.268 0.979 0.012 3.175 3.757 0.103 0.013 0.105 0.142 2.972 0.048 5.164 2.532 0.037 0.047 0.333 0.112 2.955 0.965 1.541 1.372 2.011 21 chr1 23871074 23927950 + 0 NA Intergenic Intergenic -13227 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 0.682 2.445 1.518 0.333 0.534 3.709 0.729 0.452 2.604 0.496 0.789 0.550 0.640 0.878 0.992 0.781 1.201 1.795 1.516 0.331 1.615 1.279 2.314 4.015 5.217 0.356 0.236 0.432 0.854 4.459 1.760 2.190 2.633 1.315 1.322 0.825 4.050 5.469 0.852 0.732 0.053 0.033 286 chr12 6975152 7001319 + 0 NA intron (NR_135083, intron 2 of 3) L1PB1|LINE|L1 -4910 NR_002803 283345 Hs.720698 NR_002803 ENSG00000240370 RPL13P5 RPL13-2|RPL13L|RPL13_4_1199|RRPL13L ribosomal protein L13 pseudogene 5 pseudo 1.990 1.531 0.725 0.701 1.753 1.875 2.915 1.532 3.512 1.925 2.379 0.521 0.822 1.537 1.961 1.715 0.558 1.242 0.742 0.581 2.847 2.963 0.636 1.842 1.379 0.989 0.537 2.966 3.014 5.534 3.671 1.946 1.927 2.110 1.274 0.886 0.831 4.736 1.013 0.677 1.005 0.641 584 chr17 36600535 36613722 + 0 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 22408 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 9.406 4.572 0.192 0.201 0.851 0.212 0.489 1.145 3.010 0.902 0.565 0.630 0.823 0.324 0.745 1.429 2.421 0.539 0.053 0.084 0.746 0.555 3.633 0.277 9.305 6.358 2.133 0.240 0.286 1.229 1.645 0.079 0.421 1.031 1.448 0.567 0.063 0.283 0.396 1.618 0.140 0.104 270 chr11 128041812 128053615 + 0 NA Intergenic L2b|LINE|L2 344492 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 0.780 0.638 0.063 0.610 0.583 1.004 0.522 2.091 0.406 0.181 0.068 0.933 0.911 2.975 0.212 1.528 0.380 0.674 0.035 1.340 0.493 0.468 0.036 10.532 5.262 2.557 0.633 6.331 0.214 1.608 0.033 0.293 0.121 4.776 0.141 0.354 0.517 0.671 1.072 0.268 0.103 330 chr12 57910174 57918683 + 0 NA promoter-TSS (NM_004083) promoter-TSS (NM_004083) -128 NM_001195056 1649 Hs.505777 NM_004083 ENSG00000175197 DDIT3 CEBPZ|CHOP|CHOP-10|CHOP10|GADD153 DNA damage inducible transcript 3 protein-coding 4.145 3.900 2.857 1.071 3.259 2.992 2.905 1.905 10.488 7.368 4.348 1.511 1.997 2.018 2.389 2.618 1.418 9.464 2.063 8.737 2.163 2.379 3.000 4.626 3.086 3.832 2.070 1.480 9.099 4.150 6.272 4.427 2.960 4.174 4.566 1.829 2.053 5.830 3.839 1.825 5.152 3.546 27 chr1 28665675 28698148 + 0 NA Intergenic L2b|LINE|L2 -14182 NM_001048183 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 2.219 0.632 0.753 0.840 1.521 0.499 1.531 1.385 4.095 1.057 1.479 1.045 0.259 0.845 0.802 1.812 0.620 0.742 0.416 0.341 1.060 1.018 0.433 0.712 0.884 0.569 0.298 0.788 0.992 1.064 0.964 0.696 1.069 1.144 1.467 0.586 0.699 1.197 0.644 0.427 0.250 0.133 649 chr17 76966342 77009533 + 0 NA 3' UTR (NM_001159772, exon 6 of 6) 3' UTR (NM_001159772, exon 6 of 6) -11876 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 1.217 1.618 0.075 0.614 1.738 1.608 0.827 0.451 7.669 2.678 1.247 0.813 0.627 0.899 0.876 2.690 0.387 1.016 0.624 0.176 0.890 0.728 0.390 1.351 1.071 0.621 0.319 0.452 1.088 1.020 0.692 0.431 2.020 1.346 0.566 1.436 2.499 1.051 0.486 0.667 0.369 0.209 573 chr17 27272526 27280196 + 0 NA intron (NM_020889, intron 2 of 8) CpG 2147 NM_020889 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 4.189 5.534 1.614 2.071 5.702 2.599 4.479 1.983 10.972 9.516 6.342 2.062 3.333 2.772 3.913 4.067 2.241 1.761 2.051 4.021 4.424 5.743 2.835 3.912 11.803 6.888 3.855 1.441 5.342 6.967 3.371 3.116 3.448 4.446 3.192 2.217 3.120 7.560 3.146 2.834 3.428 2.634 46 chr1 59217550 59232637 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 24692 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 0.611 1.028 0.012 1.662 2.420 0.348 3.179 1.877 nan 0.523 1.776 2.272 2.458 2.516 0.329 5.235 0.373 1.875 0.073 0.009 2.707 2.333 0.156 0.414 2.745 1.092 0.746 4.162 7.598 0.243 1.134 0.351 0.671 1.676 7.843 0.347 0.284 0.412 1.431 1.416 0.603 0.588 596 chr17 38459256 38509393 + 0 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 9851 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 8.282 3.250 0.137 0.820 2.166 3.283 0.984 0.730 4.388 2.669 3.389 1.637 1.817 2.460 1.321 2.435 1.705 0.803 0.599 0.549 1.422 1.094 0.744 1.295 1.299 1.066 0.581 0.724 0.903 2.602 0.813 0.858 1.746 2.823 0.941 0.662 1.970 1.309 0.906 2.050 0.200 0.133 428 chr14 75985870 75991205 + 0 NA promoter-TSS (NM_006399) promoter-TSS (NM_006399) -247 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 0.413 0.118 1.606 0.035 0.159 0.024 0.508 1.524 5.490 1.853 3.579 0.544 0.244 1.146 8.053 0.589 0.611 0.489 0.149 2.639 1.601 0.014 0.061 0.105 0.135 0.190 0.259 0.264 0.458 0.054 0.945 5.454 0.429 0.262 0.755 8.723 0.100 0.148 0.143 0.043 431 chr14 100841146 100908806 + 0 NA intron (NM_024515, intron 2 of 6) intron (NM_024515, intron 2 of 6) 32143 NM_024515 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 0.408 0.342 0.093 0.132 0.198 0.323 0.420 0.161 1.312 0.670 0.729 0.322 0.222 0.243 0.170 0.756 0.161 0.461 0.319 0.241 1.595 1.027 0.673 8.416 2.920 0.208 0.139 0.407 0.479 1.075 0.699 2.681 2.039 0.218 0.847 0.532 1.836 1.496 1.153 0.346 0.114 0.070 301 chr12 16817006 16825803 + 0 NA Intergenic AmnSINE1|SINE|Deu -60256 NM_001243609 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 0.098 0.045 0.044 0.133 0.218 0.059 0.141 0.082 7.821 0.050 0.027 0.051 0.044 0.080 0.115 0.012 0.016 0.016 0.008 0.037 0.021 0.044 0.069 0.037 0.032 0.018 0.023 0.078 0.127 0.050 0.028 0.007 0.027 0.013 1003 chr4 68264440 68266873 + 0 NA Intergenic ALR/Alpha|Satellite|centr 22062 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 4.685 6.473 3.905 6.413 7.633 11.665 8.453 7.605 10.726 14.026 9.342 8.331 13.688 6.660 19.918 8.248 2.113 8.389 7.750 6.045 7.126 5.114 2.090 10.213 8.996 4.108 2.735 6.791 19.656 6.023 6.451 4.840 9.459 6.101 8.539 7.233 9.119 8.561 5.888 3.674 3.241 2.289 1273 chr8 119906835 119930152 + 0 NA Intergenic Intergenic 45890 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 0.105 1.499 0.021 0.658 0.995 0.314 0.760 1.387 2.894 0.928 2.131 1.393 0.375 0.693 0.644 0.765 0.077 0.621 4.996 0.030 0.453 0.127 0.019 0.341 0.586 0.738 0.642 0.372 1.810 0.230 0.082 0.081 0.098 0.440 0.107 0.146 0.245 0.142 0.693 0.368 0.151 0.082 475 chr15 96724284 96730152 + 0 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -141939 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 0.312 0.066 0.043 0.108 0.635 0.045 0.190 0.096 0.121 0.004 0.020 0.150 0.145 0.050 0.182 0.023 0.257 0.024 0.063 0.103 0.063 0.010 0.013 0.052 0.243 3.974 0.073 4.800 4.356 0.072 0.016 0.503 3.422 0.110 0.014 0.087 0.010 0.008 926 chr22 50322109 50364931 + 0 NA Intergenic Intergenic -10623 NM_001001852 415116 Hs.530381 NM_001001852 ENSG00000198355 PIM3 pim-3 Pim-3 proto-oncogene, serine/threonine kinase protein-coding 4.385 2.980 0.469 0.961 2.744 1.767 4.181 0.934 13.044 6.838 6.220 1.050 0.432 1.330 1.401 1.308 1.127 0.529 0.607 0.166 0.721 0.828 1.014 1.183 2.068 1.466 0.660 0.850 0.770 2.865 1.512 4.526 5.657 3.626 0.922 1.729 5.216 2.667 0.772 0.267 0.605 0.344 662 chr17 79934185 79942558 + 0 NA intron (NM_001251888, intron 2 of 16) intron (NM_001251888, intron 2 of 16) 2945 NR_045351 79058 Hs.298351 NM_024083 ENSG00000169696 ASPSCR1 ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 ASPSCR1, UBX domain containing tether for SLC2A4 protein-coding 1.570 2.036 1.890 0.452 2.247 4.349 2.507 0.974 4.372 2.758 4.007 0.611 0.621 1.333 1.223 1.754 0.603 1.015 1.153 1.261 1.066 0.997 1.497 1.537 12.187 1.125 0.569 1.413 1.730 3.109 2.696 1.153 2.344 3.178 1.515 0.950 9.622 3.496 0.714 0.773 0.757 0.563 1212 chr7 101370164 101378230 + 0 NA Intergenic Intergenic -84987 NM_001202543 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 0.107 1.032 0.038 0.925 1.064 0.015 4.901 1.919 2.924 0.773 2.094 0.874 0.678 1.459 0.728 3.071 0.177 2.188 0.063 0.017 1.640 1.129 0.028 2.587 1.890 0.270 0.146 3.113 1.630 0.807 0.080 0.029 1.829 2.444 0.080 1.855 1.302 0.187 2.756 0.198 1.936 1.535 1224 chr7 150062825 150077965 + 0 NA 3' UTR (NM_001099695, exon 3 of 3) 3' UTR (NM_001099695, exon 3 of 3) 2137 NM_014374 29803 Hs.647086 NM_013400 ENSG00000214022 REPIN1 AP4|RIP60|ZNF464|Zfp464 replication initiator 1 protein-coding 2.910 3.292 2.197 0.917 3.444 3.640 4.646 0.641 2.989 2.344 4.205 1.004 1.293 1.590 3.284 1.125 0.809 2.425 2.980 3.814 1.941 2.371 2.848 3.102 4.336 2.051 0.911 1.990 2.020 3.640 2.401 3.543 2.343 3.327 3.038 1.225 2.447 5.290 2.901 0.444 1.757 1.052 1051 chr5 56656642 56667190 + 0 NA Intergenic Intergenic 116720 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 0.605 0.111 0.049 0.503 0.437 0.383 2.484 3.412 2.201 0.846 1.728 1.440 1.031 1.671 1.329 5.162 0.027 0.802 0.038 0.026 2.145 1.081 0.021 0.112 0.071 0.320 0.260 0.926 0.075 0.276 0.121 0.103 0.883 0.826 1.787 0.696 0.189 0.223 0.610 0.541 3.388 3.848 856 chr20 43963665 43978792 + 0 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 5836 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 6.883 4.174 2.088 2.072 4.766 4.887 3.876 2.782 7.039 4.527 6.523 2.867 2.556 2.772 3.173 3.312 6.336 2.020 0.452 0.260 2.746 2.199 2.642 1.039 8.160 2.176 1.052 3.568 0.767 2.290 4.347 3.774 3.583 9.109 3.460 2.640 4.729 5.330 3.641 3.161 1.851 1.095 1214 chr7 101510717 101534164 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 61558 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 0.289 0.455 2.034 0.462 1.115 2.556 1.244 0.477 3.064 1.056 1.647 0.379 0.215 0.632 0.791 1.622 0.423 0.511 0.178 0.059 0.367 0.268 0.595 1.163 0.931 0.531 0.224 1.087 1.138 3.823 2.032 0.590 1.688 2.129 1.299 1.034 3.352 1.140 0.748 0.221 1.258 1.228 1201 chr7 55954306 55956643 + 0 NA intron (NM_182633, intron 1 of 6) G-rich|Low_complexity|Low_complexity 504 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 4.030 3.062 3.177 0.592 2.752 1.626 5.596 0.895 8.393 6.740 22.265 0.623 0.706 1.324 7.480 1.220 2.075 1.959 1.484 2.976 1.743 1.984 2.136 0.568 4.492 1.417 0.528 3.220 2.270 4.284 2.496 1.559 1.679 4.126 2.655 1.459 3.292 4.457 1.999 0.781 1.675 0.984 292 chr12 9797551 9804844 + 0 NA non-coding (NR_002814, exon 1 of 4) non-coding (NR_002814, exon 1 of 4) 554 NR_046447 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 2.659 0.726 0.958 1.558 3.447 0.337 5.765 2.475 7.322 3.458 7.128 1.541 1.560 2.824 6.110 2.806 1.613 4.297 0.302 0.514 1.995 1.790 0.507 0.710 3.486 1.993 0.951 2.658 12.927 2.076 3.721 0.529 3.124 2.282 2.615 1.513 1.725 2.706 0.944 1.278 0.758 0.294 1193 chr7 26233137 26245635 + 0 NA intron (NM_031243, intron 1 of 11) intron (NM_031243, intron 1 of 11) 1027 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 7.934 3.755 2.150 0.653 2.994 4.586 6.393 1.327 7.393 6.264 6.820 1.342 2.035 2.212 6.479 1.863 3.064 1.852 2.317 4.712 2.770 3.740 2.180 4.567 7.024 3.446 1.436 2.826 5.350 4.285 2.743 2.728 3.019 3.360 5.056 2.033 2.308 5.246 3.773 2.893 3.343 2.503 729 chr19 45922212 45934859 + 0 NA Intergenic L2a|LINE|L2 -1358 NM_001166049 2067 Hs.435981 NM_001983 ENSG00000012061 ERCC1 COFS4|RAD10|UV20 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding 3.440 2.698 0.364 0.836 2.335 3.437 2.556 1.264 nan 2.217 2.513 1.214 1.855 1.429 2.719 3.402 1.322 3.238 0.873 0.831 1.921 1.937 0.676 1.867 5.027 4.866 1.739 0.847 4.075 3.110 10.832 2.708 1.737 2.879 1.303 1.419 1.469 3.425 0.546 1.762 3.174 3.058 613 chr17 42275165 42278737 + 0 NA Intergenic CpG -1422 NM_020218 56970 Hs.512651 NM_020218 ENSG00000087152 ATXN7L3 - ataxin 7 like 3 protein-coding 9.632 9.959 3.969 2.070 8.895 6.616 8.949 2.284 16.446 12.253 9.081 1.687 2.916 3.886 6.461 6.953 4.233 3.727 2.761 4.693 4.808 7.429 6.651 5.822 10.800 5.558 2.667 4.978 7.604 11.099 4.985 4.127 5.855 9.707 4.402 4.141 5.309 11.930 4.139 3.907 3.853 2.173 916 chr22 37579839 37597326 + 0 NA Intergenic MER41-int|LTR|ERV1 -4252 NM_182486 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and tumor necrosis factor related protein 6 protein-coding 1.864 1.217 2.063 1.368 3.604 5.440 1.411 1.486 4.925 3.404 3.607 2.133 0.837 0.812 7.427 2.821 2.682 0.458 0.342 0.186 0.813 0.840 0.237 1.956 2.128 2.668 1.099 1.643 0.895 3.311 1.588 2.364 5.448 3.321 2.464 2.450 9.322 4.291 3.593 1.684 0.893 0.743 674 chr18 45844154 45872300 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) 77566 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 0.054 0.255 0.007 0.037 0.044 0.039 0.019 0.640 0.071 0.085 0.010 0.071 0.023 0.313 0.056 0.007 0.062 4.202 0.030 0.049 0.010 0.052 0.073 0.095 0.067 0.030 0.049 0.124 0.132 0.058 0.334 0.288 0.025 0.010 0.087 0.058 0.085 0.510 0.188 0.102 0.090 462 chr15 75741601 75749410 + 0 NA intron (NM_001145357, intron 1 of 20) CpG-8103 -1418 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 4.484 5.156 3.875 1.237 4.140 5.789 4.846 1.817 9.962 6.942 4.295 2.219 1.424 2.596 4.015 2.212 1.960 2.576 2.344 6.567 1.897 2.387 3.185 3.394 7.301 3.805 1.620 1.601 4.084 7.089 4.671 3.577 4.388 6.548 3.733 3.171 2.460 7.223 2.761 2.402 2.446 1.385 922 chr22 38612440 38640645 + 0 NA intron (NM_012264, intron 5 of 8) intron (NM_012264, intron 5 of 8) -5815 NR_132774 106635525 NR_132774 SNORA92 - small nucleolar RNA, H/ACA box 92 snoRNA 2.148 2.415 0.539 0.813 1.691 1.524 1.674 1.415 5.414 2.357 1.134 0.430 0.792 1.245 2.372 2.346 0.524 1.469 0.315 0.096 0.975 0.778 0.568 0.330 1.331 1.734 0.631 0.897 1.199 1.336 0.845 0.133 2.017 3.283 1.142 0.981 3.229 1.195 1.010 1.416 0.469 0.269 300 chr12 16715157 16767298 + 0 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 17086 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 0.095 0.043 0.555 0.167 0.352 0.019 4.821 2.398 0.789 0.313 8.513 0.186 1.390 4.251 0.118 0.458 0.007 0.125 0.029 0.011 0.430 0.182 0.007 0.053 0.053 0.015 0.019 0.699 0.237 0.075 0.138 0.060 0.066 0.394 4.519 0.050 0.063 0.085 0.149 0.009 0.018 0.006 771 chr2 42784735 42798057 + 0 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) -3789 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 0.943 0.668 0.289 0.312 1.219 0.884 0.572 0.303 nan 1.314 1.708 0.540 0.248 0.319 5.196 1.010 1.624 0.402 0.383 1.153 0.442 0.318 0.746 0.812 1.050 0.908 0.591 1.276 0.508 1.983 1.532 0.991 2.257 1.148 0.687 0.964 4.881 2.325 0.605 0.339 0.258 0.188 4 chr1 2984601 2996285 + 0 NA intron (NM_199454, intron 1 of 16) CpG 4701 NM_199454 63976 Hs.99500 NM_022114 ENSG00000142611 PRDM16 CMD1LL|KMT8F|LVNC8|MEL1|PFM13 PR/SET domain 16 protein-coding 0.062 0.040 0.021 0.016 0.027 0.011 0.182 0.018 nan 0.165 0.068 0.025 0.229 0.348 0.025 0.183 0.131 0.039 1.394 0.155 3.037 4.292 0.113 0.054 0.109 0.267 0.305 0.019 0.188 0.244 0.067 0.020 0.023 0.054 0.079 0.042 0.062 1.379 0.074 0.046 0.647 0.328 953 chr3 71156656 71206578 + 0 NA intron (NM_032682, intron 6 of 20) intron (NM_032682, intron 6 of 20) -1525 NM_001244815 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 0.512 1.066 0.013 0.254 0.489 0.091 0.813 0.492 3.274 1.888 0.425 0.541 0.495 0.931 0.079 0.997 0.019 0.608 0.384 0.017 0.842 0.517 0.012 0.257 0.206 0.180 0.119 0.294 0.507 0.357 0.032 0.879 0.688 0.447 1.773 0.616 0.318 0.071 0.546 0.573 0.021 0.007 1209 chr7 100462377 100476173 + 0 NA exon (NM_003302, exon 7 of 9) exon (NM_003302, exon 7 of 9) -3426 NM_001128853 51593 Hs.111801 NM_015908 ENSG00000087087 SRRT ARS2|ASR2|serrate serrate, RNA effector molecule protein-coding 2.501 1.350 0.924 1.181 2.680 1.359 4.629 0.770 5.331 2.826 8.140 0.997 1.430 2.415 2.137 3.420 1.057 2.509 1.281 0.773 1.333 1.775 0.818 4.141 4.828 3.433 1.577 1.683 1.421 2.715 4.335 1.851 2.197 3.626 2.380 2.233 0.863 2.291 4.250 3.113 3.206 2.271 132 chr1 201974705 202102915 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -53219 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 1.824 0.320 0.870 0.442 1.169 0.479 1.709 1.501 7.913 2.248 2.347 0.851 0.119 2.327 2.255 1.580 1.032 1.286 0.586 0.050 1.076 0.678 0.089 0.538 0.292 0.141 0.096 1.390 0.263 3.289 0.069 0.926 2.807 2.680 1.067 1.233 3.393 0.136 0.507 0.143 0.045 0.024 1271 chr8 116677005 116682921 + 0 NA intron (NM_001282903, intron 1 of 6) intron (NM_001282903, intron 1 of 6) 276 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 4.162 0.984 0.450 0.898 3.527 1.882 2.174 0.354 4.938 1.398 0.503 3.402 1.008 0.738 2.106 2.186 5.419 3.101 0.083 8.904 2.507 2.320 1.184 0.211 0.543 1.602 0.936 0.737 5.483 0.482 3.462 2.411 4.836 4.173 0.016 0.808 3.440 1.686 1.055 0.991 0.195 0.189 963 chr3 141079198 141090395 + 0 NA intron (NM_001080412, intron 1 of 7) L2|LINE|L2 41741 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 5.264 2.835 0.126 1.235 3.187 5.590 7.002 4.329 4.397 2.017 2.221 1.428 2.046 3.708 0.516 5.169 1.053 2.604 0.797 0.074 2.467 2.465 0.324 7.718 8.776 3.029 1.114 2.735 4.946 4.787 3.551 1.685 5.174 2.616 7.619 2.078 2.855 0.507 3.524 3.188 5.787 6.814 215 chr11 61519407 61530629 + 0 NA non-coding (NR_026882, exon 1 of 4) non-coding (NR_026882, exon 1 of 4) 118 NR_026882 26070 Hs.564254 NR_026882 ENSG00000124915 DKFZP434K028 - uncharacterized LOC26070 ncRNA 3.342 1.097 0.006 0.355 0.641 0.078 0.348 0.758 4.832 1.396 0.217 0.679 0.190 0.368 0.516 1.167 0.017 2.399 2.633 0.025 0.915 0.588 0.244 0.226 0.690 0.806 0.313 0.959 0.274 6.337 0.661 0.725 0.319 0.332 0.160 0.555 0.081 0.724 0.323 0.149 0.036 0.040 865 chr20 49274434 49298430 + 0 NA intron (NM_001290268, intron 1 of 21) AluSq2|SINE|Alu 21635 NR_110890 140876 Hs.372578 NM_080829 ENSG00000042062 FAM65C C20orf175|C20orf176 family with sequence similarity 65 member C protein-coding 3.539 0.324 0.153 0.283 0.806 0.176 0.555 0.590 2.094 0.839 0.970 0.412 0.110 0.655 3.406 0.623 0.772 0.426 0.078 0.083 0.421 0.244 0.058 0.166 1.291 0.173 0.108 0.615 0.392 1.054 0.137 0.687 0.586 1.332 0.877 0.505 2.816 0.376 0.418 0.067 0.043 0.019 508 chr16 30063050 30088967 + 0 NA promoter-TSS (NM_001243177) promoter-TSS (NM_001243177) 190 NM_001127617 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 3.033 3.817 1.012 0.835 2.421 2.975 2.273 0.644 4.046 2.122 2.146 1.402 1.054 2.486 3.250 1.904 1.457 1.810 3.453 1.049 1.419 1.672 1.817 3.305 3.406 2.172 0.953 1.308 2.361 2.458 2.498 2.753 3.527 2.990 3.348 0.956 1.636 3.775 2.215 1.862 1.684 1.062 1122 chr6 33171903 33176984 + 0 NA 3' UTR (NM_014234, exon 9 of 9).3 3' UTR (NM_014234, exon 9 of 9).3 -1169 NR_029633 407002 NR_029633 ENSG00000199036 MIR219A1 MIR219-1|MIRN219-1|MRI219-1|hsa-mir-219a-1|mir-219|mir-219a-1 microRNA 219a-1 ncRNA 5.209 6.877 0.942 1.940 4.624 7.534 2.355 1.443 6.488 4.644 3.971 4.086 1.468 1.479 2.130 6.592 0.686 2.957 2.434 2.998 1.876 1.798 1.509 1.476 4.242 3.250 1.672 2.056 2.675 2.478 6.533 3.605 2.668 9.331 3.002 2.148 1.755 6.637 2.628 2.894 6.070 3.161 492 chr16 11653212 11658478 + 0 NA intron (NR_024320, intron 1 of 3) AluJo|SINE|Alu 24384 NM_004862 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 0.252 0.311 8.842 0.072 0.523 0.538 0.092 0.081 1.107 0.380 0.108 0.028 0.022 0.064 0.208 0.231 0.288 0.122 0.090 0.132 0.235 0.146 0.469 0.522 0.219 0.032 0.074 0.088 0.087 1.819 0.188 1.698 0.300 0.231 0.035 0.046 0.236 0.210 0.104 0.131 0.131 0.019 409 chr14 38008954 38037847 + 0 NA Intergenic L1MEc|LINE|L1 40925 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 0.270 0.156 1.158 0.046 0.193 0.031 0.137 0.091 6.253 2.956 4.598 0.202 0.069 0.090 0.663 0.137 0.017 0.297 0.079 0.077 0.261 0.100 0.013 1.353 0.041 0.025 0.013 0.183 0.080 0.287 0.037 0.544 1.240 0.245 0.141 0.212 1.150 0.040 0.217 0.034 0.010 0.009 1073 chr5 133858275 133873592 + 0 NA intron (NM_015288, intron 1 of 10) intron (NM_015288, intron 1 of 10) 4135 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 2.197 3.154 0.441 0.880 2.280 4.141 2.731 1.261 6.735 4.269 3.008 1.048 0.895 1.371 2.150 2.430 1.600 1.639 1.045 1.802 1.879 2.559 2.778 2.915 3.732 3.219 1.225 1.751 2.313 4.539 7.660 2.020 1.921 2.661 1.422 1.543 1.410 3.898 1.459 2.400 2.978 1.890 72 chr1 151296392 151302884 + 0 NA intron (NM_001198773, intron 1 of 12) intron (NM_001198773, intron 1 of 12) 553 NM_001198775 5298 Hs.632465 NM_002651 ENSG00000143393 PI4KB NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB phosphatidylinositol 4-kinase beta protein-coding 1.850 2.273 1.178 1.214 2.355 1.931 1.696 1.299 18.029 13.976 1.603 1.305 1.550 2.001 1.788 2.655 0.799 2.030 1.598 1.044 2.087 2.088 1.466 3.025 2.596 2.416 1.022 0.945 1.971 2.270 2.474 6.256 4.704 2.263 2.586 1.642 2.430 3.874 2.443 1.174 1.863 1.133 501 chr16 14722598 14735784 + 0 NA intron (NM_001330500, intron 1 of 5) AluSx1|SINE|Alu 2523 NM_016561 51283 Hs.435556 NM_016561 ENSG00000103429 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 2.829 2.654 1.307 0.813 2.057 1.631 2.044 0.937 4.585 2.994 1.292 1.024 0.705 2.280 1.839 2.375 1.427 1.513 0.853 0.725 1.460 1.458 1.633 2.126 3.118 1.595 0.724 1.167 2.031 2.773 1.956 1.246 1.909 4.209 2.392 0.752 1.026 2.793 1.699 0.911 1.039 0.690 904 chr22 18688023 18688640 + 0 NA intron (NR_136570, intron 1 of 11) AluSc8|SINE|Alu 299 NR_136570 100996415 Hs.645542 NR_136570 LOC100996415 - uncharacterized LOC100996415 ncRNA 1.399 6.458 1.336 0.314 0.339 1.752 5.992 0.167 nan 5.984 3.220 41.422 0.388 1.159 2.800 0.120 0.291 0.539 0.230 0.227 4.607 0.277 0.053 0.127 0.383 0.776 2.097 0.282 0.425 0.775 0.281 0.575 0.377 0.129 0.376 0.280 1217 chr7 103269886 103281370 + 0 NA intron (NM_173054, intron 19 of 63) intron (NM_173054, intron 19 of 63) -189004 NM_206883 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 1.062 0.138 0.011 0.400 0.487 0.027 3.560 0.944 0.158 0.217 0.942 0.533 0.083 1.512 0.178 0.677 0.074 0.161 0.018 0.006 0.013 0.006 0.074 0.201 0.102 0.102 0.375 0.122 0.057 0.025 0.041 0.410 0.080 0.041 0.330 0.123 0.020 0.311 0.013 0.035 1228 chr8 23074757 23088475 + 0 NA intron (NM_003844, intron 1 of 9) AluSc8|SINE|Alu 1064 NM_003844 8797 Hs.213467 NM_003844 ENSG00000104689 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 TNF receptor superfamily member 10a protein-coding 1.614 1.433 0.049 0.639 1.822 1.610 1.318 1.542 4.426 2.560 1.265 2.077 0.724 1.868 1.301 3.207 0.244 1.566 0.254 0.283 2.699 2.624 0.299 1.702 2.926 2.347 1.073 1.581 0.751 2.645 2.482 0.820 2.199 1.580 1.797 1.045 0.338 1.788 0.999 1.557 0.385 0.158 760 chr2 16429243 16440206 + 0 NA Intergenic Intergenic 244175 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.131 0.089 4.952 0.039 0.023 0.050 0.010 0.426 0.139 0.175 0.026 0.030 0.035 0.032 0.009 0.042 0.037 0.011 0.029 0.126 0.005 0.064 0.091 0.097 0.017 0.144 0.066 0.033 0.009 0.100 0.076 0.032 0.057 0.055 0.037 0.014 1102 chr6 10398332 10431549 + 0 NA non-coding (NR_033910, exon 2 of 3) non-coding (NR_033910, exon 2 of 3) 530 NM_003220 7020 Hs.519880 NM_003220 ENSG00000137203 TFAP2A AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 transcription factor AP-2 alpha protein-coding 3.517 1.786 3.488 0.630 1.938 2.926 1.563 0.908 7.153 4.026 3.908 0.877 0.378 0.693 2.013 1.679 2.093 1.192 0.202 0.154 1.733 1.702 0.877 2.628 12.466 1.969 0.932 1.735 1.852 1.755 2.646 0.810 1.380 2.667 1.747 0.738 2.763 4.464 3.000 1.385 0.144 0.060 517 chr16 54314552 54326587 + 0 NA promoter-TSS (NM_024336) promoter-TSS (NM_024336) -191 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 0.125 6.166 0.124 0.016 0.035 0.251 0.663 0.140 1.947 0.973 2.354 1.103 1.042 0.951 4.169 0.201 1.589 1.459 0.872 0.460 2.620 3.354 0.271 0.703 1.664 1.333 0.966 0.064 0.332 1.066 1.347 2.958 5.412 0.083 0.101 0.325 1.328 3.964 2.072 3.134 1.321 1.021 1227 chr8 22921017 22933812 + 0 NA promoter-TSS (NR_027140) promoter-TSS (NR_027140) -714 NR_027140 8795 Hs.521456 NM_003842 ENSG00000120889 TNFRSF10B CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9 TNF receptor superfamily member 10b protein-coding 3.566 2.411 0.393 0.785 2.054 1.264 2.157 2.309 5.502 3.288 0.788 2.025 0.820 3.010 1.793 3.239 0.336 2.234 1.128 0.964 2.906 3.074 0.615 1.534 4.504 2.464 1.085 1.578 3.487 3.786 2.605 2.163 2.638 1.856 1.079 2.021 0.486 2.239 1.794 2.024 1.044 0.817 160 chr10 32248850 32255440 + 0 NA Intergenic L1M1|LINE|L1 -34341 NM_001270696 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 0.371 0.247 0.365 0.200 1.217 0.229 0.891 1.896 1.773 0.459 1.948 0.245 0.090 0.258 1.856 0.445 0.309 0.207 0.042 0.673 0.253 0.090 0.272 2.661 0.110 0.166 3.231 0.151 0.769 0.130 3.335 6.608 1.721 0.128 2.030 1.216 0.381 1.063 0.353 0.163 0.168 383 chr13 74227372 74259644 + 0 NA Intergenic L2a|LINE|L2 105127 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.161 0.100 0.015 0.012 0.069 0.010 0.074 0.026 5.871 1.871 0.395 0.086 0.018 0.054 0.131 0.064 0.006 0.078 0.166 0.013 0.066 0.034 0.020 0.085 0.153 0.017 0.017 0.069 0.121 0.407 0.038 0.132 0.278 0.035 0.017 0.599 0.172 0.027 0.015 0.054 0.012 0.009 251 chr11 72966011 72986881 + 0 NA 5' UTR (NM_001277206, exon 1 of 3) 5' UTR (NM_001277206, exon 1 of 3) 165 NM_001277206 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 0.167 0.227 0.088 1.399 3.048 0.767 0.154 1.411 nan 1.366 2.682 0.555 0.754 3.818 3.620 2.946 0.445 0.455 0.081 0.027 1.407 1.071 0.289 0.333 3.748 1.165 0.552 0.858 1.712 1.364 0.406 1.878 1.961 2.247 2.705 0.200 3.390 0.920 1.389 0.172 1.109 1.074 1076 chr5 134442117 134479322 + 0 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) -84982 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1|Epist C5orf66 antisense RNA 1 ncRNA 0.167 0.321 0.019 0.498 0.636 0.021 0.595 0.408 6.463 2.002 0.184 0.634 0.142 1.611 1.045 2.033 0.056 0.347 0.496 0.026 1.866 1.242 0.063 0.785 0.082 0.174 0.069 0.335 0.497 0.762 0.068 0.161 2.847 0.195 0.174 1.157 0.238 0.084 0.358 0.451 0.093 0.123 929 chr3 5014241 5071118 + 0 NA Intergenic MIR|SINE|MIR -21033 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2.045 1.169 0.388 1.144 2.360 2.642 4.354 1.994 7.318 3.429 2.407 2.187 1.091 1.825 0.719 2.119 1.243 3.030 0.337 1.196 0.997 0.906 0.189 2.025 3.370 1.541 0.826 1.190 1.699 3.781 2.084 1.181 2.105 2.852 2.659 1.074 0.437 2.675 1.269 2.043 1.417 0.898 422 chr14 65671592 65714139 + 0 NA Intergenic LTR78|LTR|ERV1 -3800 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 1.439 0.668 0.413 0.841 1.157 0.133 1.167 1.914 8.743 3.495 5.093 2.695 1.000 1.928 1.729 3.088 0.036 2.381 0.070 0.013 4.347 3.486 0.052 0.195 0.250 0.251 0.201 3.612 4.201 0.649 0.338 0.231 2.262 0.716 0.266 0.379 0.385 0.332 2.342 2.933 0.431 0.424 620 chr17 46011942 46036165 + 0 NA exon (NM_018129, exon 7 of 7) exon (NM_018129, exon 7 of 7) 5164 NM_018129 55163 Hs.631742 NM_018129 ENSG00000108439 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 2.746 0.901 0.857 0.932 1.102 0.440 0.689 0.901 nan 0.677 1.026 0.571 0.603 1.646 2.618 3.074 0.229 0.891 0.508 0.171 0.758 0.607 0.418 0.478 0.544 0.882 0.612 0.473 1.316 1.059 1.455 2.209 1.320 1.681 1.014 0.874 2.130 0.782 0.872 0.482 0.781 0.848 47 chr1 59245434 59253550 + 0 NA 5' UTR (NM_002228, exon 1 of 1) 5' UTR (NM_002228, exon 1 of 1) 293 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 4.588 5.077 1.841 1.613 4.712 2.489 5.796 1.963 nan 2.461 5.346 2.665 1.628 2.889 5.294 3.751 1.736 2.207 2.738 0.102 2.469 3.218 1.365 0.857 5.701 3.211 1.398 4.404 5.542 1.451 4.071 1.927 2.211 9.698 6.020 0.877 2.109 4.943 1.587 3.273 3.065 2.950 1173 chr7 1603157 1612466 + 0 NA intron (NM_001134340, intron 2 of 2) intron (NM_001134340, intron 2 of 2) 1818 NM_032302 84262 Hs.446311 NM_032302 ENSG00000157778 PSMG3 C7orf48|PAC3 proteasome assembly chaperone 3 protein-coding 4.512 3.927 1.566 1.039 3.257 2.303 6.890 1.674 11.250 5.843 8.762 2.701 2.607 2.813 2.744 3.350 1.173 7.144 0.649 0.879 4.780 6.115 1.260 10.524 2.932 2.181 0.914 2.647 2.557 4.230 3.565 1.217 3.318 6.266 5.477 3.563 3.871 4.109 3.837 3.090 1.163 0.807 233 chr11 65336418 65345883 + 0 NA 3' UTR (NM_152832, exon 2 of 2) 3' UTR (NM_152832, exon 2 of 2) 1330 NM_001098785 23625 Hs.731854 NM_152832 ENSG00000176973 FAM89B LRAP25|MTVR|MTVR1 family with sequence similarity 89 member B protein-coding 3.757 4.568 0.767 1.454 4.035 3.796 2.939 1.662 9.043 6.414 3.706 2.931 2.397 3.819 3.866 3.108 1.361 2.593 2.874 2.995 2.515 2.804 4.003 2.275 11.880 4.798 2.444 2.084 4.138 4.716 7.220 1.594 3.116 4.183 6.173 1.834 3.143 7.044 1.982 3.240 1.681 0.852 623 chr17 46613512 46638553 + 0 NA TTS (NM_002146) TTS (NM_002146) -3639 NM_002145 3212 Hs.514289 NM_002145 ENSG00000173917 HOXB2 HOX2|HOX2H|Hox-2.8|K8 homeobox B2 protein-coding 3.001 2.617 0.302 0.258 0.487 0.111 0.092 0.047 nan 0.453 1.401 0.038 0.103 1.974 0.217 0.415 1.347 1.034 0.047 3.477 0.263 0.141 0.731 0.140 5.712 1.645 0.896 0.476 0.416 2.336 7.784 0.053 0.230 0.458 0.493 0.025 1.510 0.880 0.120 0.124 8.822 6.650 990 chr4 1282203 1285596 + 0 NA intron (NM_005882, intron 1 of 7) CpG 260 NM_001297430 10296 Hs.139896 NM_005882 ENSG00000090316 MAEA EMLP|EMP|GID9|HLC-10|PIG5 macrophage erythroblast attacher protein-coding 4.276 4.689 0.834 2.242 7.372 1.471 3.727 1.364 5.109 2.989 2.252 2.450 1.359 1.985 4.552 2.265 1.591 1.334 1.215 0.816 1.972 1.726 2.478 2.209 7.372 4.812 2.225 1.593 2.309 2.807 8.451 4.324 2.544 13.386 4.594 2.384 1.881 5.255 1.675 1.864 1.375 1.111 241 chr11 66137404 66140842 + 0 NA non-coding (NR_125343, exon 1 of 12) non-coding (NR_125343, exon 1 of 12) 168 NR_125343 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 5.230 2.654 6.800 1.117 3.852 6.271 4.371 2.534 7.732 4.724 6.265 4.076 0.892 4.682 7.711 3.999 1.639 4.164 2.948 4.353 1.882 1.742 2.347 3.902 6.764 4.733 2.562 3.042 0.691 3.735 3.787 8.906 6.131 4.574 8.122 3.419 5.636 8.142 2.448 1.787 0.201 0.133 152 chr10 3814367 3830677 + 0 NA intron (NR_027653, intron 2 of 3) intron (NR_027653, intron 2 of 3) 4951 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 4.070 2.466 0.887 0.813 2.486 4.651 4.333 1.726 1.960 1.298 3.045 1.222 2.468 1.811 1.470 2.374 1.215 3.160 0.374 1.902 2.203 2.872 1.631 1.761 3.710 3.946 1.779 0.710 4.771 2.377 2.970 1.961 1.597 3.975 3.025 1.288 2.324 9.075 3.367 4.494 5.265 5.412 179 chr10 112255208 112262416 + 0 NA intron (NM_004419, intron 1 of 3) intron (NM_004419, intron 1 of 3) 1187 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 2.819 6.086 0.034 1.229 2.862 2.234 6.012 2.186 3.284 3.143 1.137 1.385 1.818 2.635 3.350 5.090 1.270 2.962 1.925 0.441 2.341 2.686 1.941 3.049 7.975 6.719 2.279 1.082 2.282 5.557 5.328 2.248 3.361 4.357 6.998 1.720 0.709 2.584 2.143 2.232 1.997 1.608 1258 chr8 81809793 81814018 + 0 NA Intergenic L1MB5|LINE|L1 -24889 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.561 3.025 6.574 0.268 0.643 1.086 1.272 0.473 0.556 0.155 0.415 1.422 0.028 0.541 5.583 1.746 3.350 0.699 0.179 0.163 4.447 3.953 0.052 2.331 0.087 0.613 0.389 1.344 0.639 1.830 0.100 0.489 4.442 0.405 0.130 1.333 1.365 0.027 0.259 0.323 0.027 0.049 914 chr22 31737863 31744823 + 0 NA exon (NM_032050, exon 1 of 4) exon (NM_032050, exon 1 of 4) 906 NM_032050 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding 7.785 2.327 1.619 1.239 4.251 2.806 7.032 1.714 nan 6.754 8.081 2.251 0.782 2.008 6.694 2.448 1.264 1.029 1.266 1.991 0.972 0.920 1.343 2.077 4.092 2.456 1.087 3.126 2.174 3.018 2.813 2.248 5.213 3.665 2.180 2.865 4.474 4.434 3.318 1.748 1.109 0.807 1025 chr4 188934037 188944482 + 0 NA Intergenic Intergenic 22334 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 0.049 0.051 3.266 0.019 0.111 0.036 0.048 0.010 0.214 0.071 0.068 0.028 0.083 0.663 0.316 1.648 0.035 0.029 0.564 0.204 0.177 0.104 0.074 0.067 0.030 0.022 0.221 0.187 0.067 0.023 0.454 0.218 0.009 0.799 2.629 0.080 0.066 0.037 0.011 0.015 60 chr1 97735880 97745829 + 0 NA intron (NR_046590, intron 2 of 4) L2b|LINE|L2 179375 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 1.738 0.199 0.062 1.509 3.846 0.063 2.832 1.024 8.947 4.574 2.437 2.088 0.825 2.286 1.288 1.479 0.185 2.204 0.704 0.014 1.736 1.045 0.031 0.080 0.177 0.145 0.070 2.522 0.222 0.218 0.086 0.714 2.260 0.562 0.295 0.553 0.100 0.023 1.542 0.228 0.029 0.010 756 chr2 10077771 10095638 + 0 NA Intergenic L1ME4a|LINE|L1 -5088 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 0.565 0.226 1.237 0.256 0.919 0.045 0.769 0.396 7.960 4.403 4.564 0.335 0.086 1.568 2.691 0.566 0.236 0.129 0.079 0.057 0.202 0.092 0.245 0.124 0.526 0.128 0.131 0.648 0.240 0.612 0.654 0.325 1.665 2.038 0.626 0.940 1.239 0.631 0.221 0.099 0.110 0.023 1116 chr6 31525275 31530007 + 0 NA Intergenic Intergenic -12235 NM_001159740 4049 Hs.36 NM_000595 ENSG00000226979 LTA LT|TNFB|TNFSF1|TNLG1E lymphotoxin alpha protein-coding 0.413 3.204 0.040 0.898 1.068 1.143 0.231 2.095 0.155 0.118 0.145 0.217 1.528 0.715 0.061 2.850 0.967 0.022 0.146 0.336 0.197 0.077 0.338 6.303 11.549 4.126 0.120 1.178 0.196 3.438 0.067 0.099 0.347 0.110 0.052 0.070 1.746 1.572 0.483 0.097 0.065 331 chr12 57983927 57987135 + 0 NA intron (NM_024779, intron 1 of 9) intron (NM_024779, intron 1 of 9) 589 NM_024779 79837 Hs.745011 NM_024779 ENSG00000166908 PIP4K2C PIP5K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding 3.092 1.516 0.607 0.708 2.069 0.767 1.878 1.151 4.202 3.561 3.147 0.518 0.333 1.468 1.612 1.234 0.925 2.020 1.444 0.521 1.276 0.899 0.844 0.792 0.974 0.891 1.091 12.798 0.800 2.430 2.149 1.749 1.331 2.630 1.731 1.101 1.985 3.373 0.790 0.335 0.215 0.144 355 chr12 116694738 116716639 + 0 NA intron (NM_015335, intron 1 of 30) intron (NM_015335, intron 1 of 30) 9303 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13 like protein-coding 0.741 0.740 3.713 0.052 0.564 0.147 0.483 0.149 1.469 0.726 0.660 0.198 0.140 0.219 1.056 0.476 0.435 0.563 0.391 0.373 0.309 0.307 0.549 0.245 0.702 0.661 0.377 0.231 1.087 2.046 0.911 1.284 1.067 0.645 0.413 0.396 0.500 1.276 0.586 0.206 0.605 0.619 704 chr19 18383672 18417356 + 0 NA Intergenic AluSz6|SINE|Alu 7627 NR_036155 100422833 NR_036155 ENSG00000267959 MIR3188 mir-3188 microRNA 3188 ncRNA 1.447 2.207 0.927 0.997 2.471 3.048 2.888 1.096 nan 1.436 1.144 0.742 0.830 1.218 2.071 1.821 1.698 1.396 0.701 1.531 2.048 2.006 2.868 3.367 3.537 1.207 0.730 0.951 0.964 3.794 3.623 1.781 1.984 4.054 1.837 0.742 1.905 4.152 2.930 0.817 0.497 0.337 528 chr16 67875020 67882626 + 0 NA TTS (NM_020457) TTS (NM_020457) -1812 NM_001322039 10204 Hs.356630 NM_005796 ENSG00000102898 NUTF2 NTF-2|NTF2|PP15 nuclear transport factor 2 protein-coding 3.745 5.676 0.709 1.374 4.357 10.087 2.736 0.680 3.548 2.126 3.032 2.055 1.721 1.492 3.236 2.079 2.590 3.055 2.616 2.805 2.902 3.856 3.674 5.523 7.304 6.295 3.450 1.624 3.220 5.080 5.727 2.535 3.936 4.751 4.289 0.672 3.127 5.756 2.492 2.094 2.062 1.143 571 chr17 26661548 26666912 + 0 NA intron (NM_021137, intron 1 of 6) L2a|LINE|L2 1682 NM_021137 7126 Hs.76090 NM_021137 ENSG00000109079 TNFAIP1 B12|B61|BTBD34|EDP1|hBACURD2 TNF alpha induced protein 1 protein-coding 2.119 3.487 0.275 0.992 2.432 3.232 2.283 1.080 3.067 2.674 2.085 0.766 0.990 1.461 1.734 1.489 0.678 0.660 0.471 0.386 1.414 1.402 1.936 1.189 8.112 6.713 2.934 0.518 1.756 3.684 1.414 1.459 1.587 5.851 0.777 0.797 1.331 3.829 1.431 1.703 2.469 1.387 423 chr14 65720294 65726145 + 0 NA Intergenic Intergenic -34154 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 2.956 0.782 0.138 3.186 2.901 1.032 2.463 5.481 12.635 4.598 9.013 5.342 3.813 5.562 7.374 7.174 0.259 5.805 0.068 0.024 8.448 7.298 0.075 1.205 4.281 3.957 1.768 4.979 9.953 1.445 1.558 1.406 6.888 1.324 1.857 1.366 1.959 1.581 8.278 9.443 0.461 0.622 631 chr17 59311436 59345373 + 0 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 116661 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 0.087 0.245 0.336 0.034 0.143 0.032 0.112 0.065 0.401 0.149 0.121 0.095 0.115 0.058 0.087 0.182 0.028 3.287 0.020 0.754 0.102 0.055 0.102 4.449 0.101 0.107 0.083 0.075 0.258 0.408 0.159 0.112 0.244 0.109 0.055 0.123 0.334 0.068 0.121 0.042 0.032 0.019 1297 chr9 35904100 35911425 + 0 NA TTS (NM_001039792) TTS (NM_001039792) 1573 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 0.803 4.437 0.745 1.707 2.009 0.914 4.362 2.978 11.235 2.559 10.465 3.735 2.983 2.810 1.062 7.092 2.295 3.965 0.096 0.019 6.269 8.088 1.348 8.935 1.210 6.130 2.443 2.706 6.654 5.010 3.059 0.696 2.703 1.493 6.136 0.550 0.123 0.794 4.317 3.977 3.365 1.896 1137 chr6 42258304 42272446 + 0 NA intron (NM_033502, intron 4 of 17) L1MEd|LINE|L1 -79742 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 0.455 0.176 0.009 0.824 1.917 0.495 0.235 1.599 0.948 0.155 0.178 1.024 0.167 1.089 0.956 4.236 0.346 0.602 0.063 0.078 1.731 0.885 0.052 0.084 0.130 0.111 0.138 0.557 0.847 0.298 0.710 0.686 1.054 1.378 2.111 0.361 1.031 0.174 0.593 0.161 0.033 0.022 611 chr17 41789342 41806862 + 0 NA Intergenic CpG 38054 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 0.648 2.659 0.120 0.757 1.061 0.349 0.403 0.940 nan 0.489 0.333 0.409 0.664 0.649 1.319 3.928 0.250 2.471 0.193 0.095 4.506 4.267 0.387 10.077 4.084 0.603 0.378 0.244 1.734 2.730 0.467 0.270 1.532 0.690 0.131 0.503 0.653 1.472 0.473 0.495 0.109 0.055 651 chr17 78141196 78155129 + 0 NA intron (NR_047566, intron 1 of 21) AluSx|SINE|Alu -4145 NM_001257970 79092 Hs.675480 NM_024110 ENSG00000141527 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family member 14 protein-coding 0.160 0.220 0.013 0.313 0.371 0.173 0.127 0.234 2.000 0.319 0.259 0.157 0.016 0.219 0.242 0.373 0.054 0.134 0.037 0.050 0.194 0.104 0.095 0.388 0.165 0.044 0.056 0.114 0.169 0.477 0.098 0.413 4.832 0.332 0.039 2.731 0.435 0.193 0.062 0.027 0.012 0.015 663 chr17 80476470 80495443 + 0 NA intron (NM_004514, intron 1 of 8) AluJr|SINE|Alu 8362 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 0.890 1.571 1.393 0.628 2.393 0.364 1.118 0.283 nan 2.114 1.400 0.812 0.680 0.642 0.645 1.943 0.786 0.567 0.378 0.520 0.980 0.844 0.787 1.154 1.173 0.643 0.361 0.567 0.808 1.604 1.870 0.553 1.289 3.717 2.157 0.439 0.502 1.318 0.950 0.452 0.230 0.131 977 chr3 181896420 181900583 + 0 NA Intergenic Intergenic 228349 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.293 0.075 8.397 0.092 0.202 0.031 0.148 0.050 3.487 1.465 1.668 0.384 0.309 0.145 0.205 0.024 0.047 0.050 0.086 0.053 0.066 0.044 0.018 0.093 0.186 0.257 0.069 0.023 0.047 0.414 0.036 0.038 0.162 0.041 0.025 633 chr17 60850097 60889078 + 0 NA intron (NM_001288780, intron 3 of 10) intron (NM_001288780, intron 3 of 10) 14427 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 0.841 2.078 0.131 0.712 1.346 0.174 0.927 0.606 9.481 4.408 1.261 1.740 0.457 1.719 2.204 2.297 0.235 1.107 0.137 0.043 0.995 0.697 0.143 0.399 0.947 0.145 0.058 0.686 1.797 0.631 0.139 1.013 1.890 2.010 1.531 0.977 1.981 0.754 1.346 1.481 0.612 0.388 833 chr2 242283691 242296569 + 0 NA intron (NM_001008491, intron 13 of 13) intron (NM_001008491, intron 13 of 13) -5534 NM_001282984 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 0.910 0.678 0.169 0.425 1.163 4.564 0.843 0.303 1.207 0.632 1.455 0.269 0.339 0.592 0.884 0.582 0.172 0.299 0.501 0.267 0.480 0.328 0.528 0.460 0.448 0.391 0.268 0.679 0.296 1.733 0.788 1.945 0.465 0.980 0.395 0.144 0.296 1.023 0.422 0.244 0.278 0.154 1077 chr5 134572981 134586765 + 0 NA intron (NR_037895, intron 2 of 3) intron (NR_037895, intron 2 of 3) 3994 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 0.162 1.254 0.014 1.398 0.944 0.027 0.843 1.604 0.921 0.221 0.534 0.551 2.565 2.821 0.453 4.894 0.118 2.220 0.029 0.010 4.277 3.355 0.098 1.436 3.506 1.824 1.134 0.686 4.861 0.623 0.951 3.004 0.741 0.589 5.478 0.641 0.059 0.492 1.520 2.633 0.787 0.879 939 chr3 39181687 39196348 + 0 NA promoter-TSS (NM_001320559) promoter-TSS (NM_001320559) -96 NM_001320559 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 3.482 2.352 1.329 0.898 2.293 2.104 3.357 1.894 6.866 3.937 2.601 1.611 0.861 1.079 2.237 1.874 1.753 3.671 0.758 0.460 0.654 0.521 0.720 1.069 2.629 3.013 1.241 1.428 2.917 2.047 1.990 1.057 1.284 4.479 0.954 0.623 1.405 2.162 1.516 2.693 1.340 0.768 1065 chr5 92912874 92922328 + 0 NA promoter-TSS (NR_021491) promoter-TSS (NR_021491) -575 NR_109822 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 6.005 1.060 1.148 0.281 2.215 3.814 5.249 2.871 7.151 4.812 7.522 2.894 1.500 2.091 3.344 3.823 1.762 3.270 1.255 5.833 3.103 2.822 2.712 2.263 1.281 1.040 0.736 1.134 0.811 4.523 5.860 2.028 0.508 1.393 9.710 1.308 0.297 6.096 1.914 4.242 4.859 4.955 831 chr2 241517252 241527230 + 0 NA TTS (NR_103792) TTS (NR_103792) 3492 NR_103792 101752400 Hs.585987 NR_103792 ENSG00000260942 CAPN10-AS1 locus959 CAPN10 antisense RNA 1 (head to head) ncRNA 1.377 2.454 0.360 0.873 2.779 0.863 2.064 0.873 3.210 2.255 1.956 0.742 0.958 1.632 2.747 2.450 0.520 1.033 0.915 0.527 1.663 1.463 0.927 1.343 1.790 1.210 0.680 1.133 0.680 1.584 1.794 0.701 1.723 4.656 1.629 0.784 1.100 2.320 1.377 0.846 2.853 1.918 738 chr19 47596166 47618728 + 0 NA intron (NM_015168, intron 2 of 14) AluSx|SINE|Alu 9562 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 5.397 3.364 0.655 1.151 3.045 2.407 3.551 1.277 nan 5.180 6.478 1.605 1.017 2.612 2.978 2.569 2.444 3.844 2.299 1.860 1.681 2.133 2.400 3.058 3.120 2.443 0.943 2.357 1.913 3.682 2.070 2.081 1.892 4.210 1.503 2.584 4.049 2.194 1.323 1.436 1.409 1.028 419 chr14 62160360 62185830 + 0 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 8755 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 3.453 1.738 0.580 0.433 2.417 1.750 1.485 0.921 1.872 1.325 2.293 1.053 1.047 1.875 2.338 0.996 0.373 0.883 0.319 0.353 2.034 1.729 0.206 0.895 0.855 0.868 0.429 0.704 1.162 0.958 0.696 1.572 2.756 1.604 1.660 1.170 0.350 0.968 1.825 2.320 0.384 0.287 373 chr13 33848369 33860723 + 0 NA intron (NR_046693, intron 2 of 2) intron (NR_046693, intron 2 of 2) 2855 NR_046693 100874241 Hs.662433 NR_046693 ENSG00000236581 STARD13-AS STARD13-AS2 STARD13 antisense RNA ncRNA 3.127 1.360 0.636 0.585 1.036 2.357 0.864 1.272 1.348 0.704 0.919 0.723 0.893 1.580 2.565 1.254 0.486 0.844 0.041 0.871 0.524 0.538 0.611 0.884 3.185 1.404 0.569 2.420 0.606 1.012 0.697 0.788 0.808 3.165 0.407 2.778 1.043 0.975 1.974 1.925 2.072 418 chr14 62125486 62138669 + 0 NA Intergenic AluSc|SINE|Alu -30042 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 0.988 1.272 0.047 0.916 1.410 0.400 0.882 1.890 3.390 1.017 1.816 2.114 1.909 2.251 1.501 3.879 0.255 1.930 0.068 0.021 3.964 2.686 0.078 0.949 0.203 0.310 0.154 0.502 2.302 0.377 0.216 0.419 1.680 1.758 3.620 1.309 0.179 0.164 0.867 5.284 0.017 0.015 748 chr19 54481457 54547917 + 0 NA intron (NM_145814, intron 3 of 3) AluSx|SINE|Alu 19145 NM_145814 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium voltage-gated channel auxiliary subunit gamma 6 protein-coding 6.766 1.491 0.134 0.260 0.469 2.069 0.444 0.224 0.349 0.110 0.180 0.145 0.137 0.028 1.887 0.613 0.074 2.263 0.041 0.089 0.324 0.268 0.072 0.961 1.296 1.698 0.714 0.189 0.512 4.473 1.112 0.057 0.474 0.363 0.963 0.040 0.146 1.324 0.725 0.409 1.600 1.117 146 chr1 234790326 234796586 + 0 NA intron (NR_125944, intron 3 of 3) intron (NR_125944, intron 3 of 3) 11421 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 1.312 1.399 0.030 2.817 2.092 0.482 1.478 3.944 2.127 0.410 0.352 3.168 1.718 5.041 8.053 5.586 0.762 3.498 0.096 0.067 4.163 3.148 0.211 0.728 9.234 2.949 1.464 1.652 15.346 1.843 4.511 2.810 4.770 0.991 4.723 1.298 1.914 2.555 2.890 3.943 1.233 1.241 1165 chr6 134287904 134318554 + 0 NA intron (NM_004865, intron 2 of 6) L2a|LINE|L2 28928 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 0.596 0.286 0.012 0.167 0.278 0.485 0.166 0.271 0.984 0.442 0.768 0.455 0.608 0.202 0.557 0.393 0.074 2.050 0.053 0.027 0.425 0.149 0.024 0.666 0.095 0.060 0.053 0.150 0.067 0.328 0.203 0.047 0.245 0.372 0.253 0.111 0.817 0.019 0.456 0.281 0.064 0.044 1269 chr8 116064856 116071734 + 0 NA Intergenic Intergenic 611944 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 0.909 0.999 0.054 0.992 1.816 0.027 1.499 1.049 1.868 0.842 0.214 5.140 1.599 1.602 0.070 3.081 0.848 2.761 0.103 1.562 1.426 0.094 0.086 0.133 0.157 0.023 0.649 5.096 0.047 0.358 0.206 0.134 1.162 0.094 0.053 0.156 0.028 1.297 0.888 0.276 0.315 459 chr15 72036570 72047358 + 0 NA intron (NM_001286429, intron 8 of 11) MER5A1|DNA|hAT-Charlie -58086 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 1.445 1.242 0.017 1.246 2.246 5.914 2.104 1.917 4.182 2.221 1.098 1.537 1.887 1.559 0.483 2.417 0.116 2.013 0.046 0.010 1.389 0.799 0.048 2.778 2.032 0.264 0.152 2.128 1.515 3.781 0.228 2.852 2.259 3.258 2.918 0.765 1.401 0.279 2.145 1.192 1.855 1.659 333 chr12 58137897 58139896 + 0 NA 5' UTR (NM_005981, exon 1 of 6) 5' UTR (NM_005981, exon 1 of 6) 124 NM_001330169 6302 Hs.632708 NM_005981 ENSG00000135452 TSPAN31 SAS tetraspanin 31 protein-coding 5.128 5.743 1.872 3.178 0.568 2.937 0.730 7.916 5.770 4.322 1.909 1.166 2.087 4.031 1.805 1.526 7.007 2.514 0.138 2.320 2.418 2.108 3.151 0.092 4.798 1.999 15.143 4.331 5.580 5.733 3.123 4.078 5.655 1.917 1.347 1.858 5.495 3.905 1.717 1.284 0.864 557 chr17 7153247 7157160 + 0 NA promoter-TSS (NM_001143775) promoter-TSS (NM_001143775) 56 NM_015343 23399 Hs.513913 NM_015343 ENSG00000175826 CTDNEP1 DULLARD|HSA011916|NET56 CTD nuclear envelope phosphatase 1 protein-coding 3.405 3.823 2.621 1.948 8.537 5.651 4.483 1.472 9.077 7.571 8.410 1.045 1.657 2.850 5.554 3.320 2.993 2.708 3.506 2.628 1.858 2.647 2.638 6.227 9.384 5.908 2.564 4.310 4.004 8.340 7.168 3.120 2.809 12.688 7.911 3.792 3.304 10.133 5.296 2.650 4.370 2.595 891 chr21 36235091 36265560 + 0 NA intron (NM_001001890, intron 2 of 5) intron (NM_001001890, intron 2 of 5) 10662 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 2.766 1.775 3.490 1.008 2.825 1.799 3.267 2.329 7.359 4.649 4.836 1.609 1.886 2.512 2.773 3.546 1.609 1.472 0.102 0.036 2.472 2.713 1.011 1.304 3.829 1.518 0.659 2.020 2.649 1.189 2.566 0.912 2.339 3.648 3.861 1.305 2.402 1.976 1.556 2.357 1.671 1.333 639 chr17 70113972 70123246 + 0 NA intron (NM_000346, intron 1 of 2) CpG 1448 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box 9 protein-coding 5.176 0.425 0.978 2.179 0.740 1.733 0.952 2.070 2.001 0.745 2.147 1.541 0.576 2.564 2.126 1.014 2.686 0.355 0.120 0.393 0.140 0.033 1.596 1.609 0.457 0.433 0.132 1.994 2.334 2.919 0.820 1.111 3.071 0.961 0.853 0.783 1.271 1.331 1.911 4.466 4.487 1221 chr7 142975697 142988007 + 0 NA promoter-TSS (NM_001242773) promoter-TSS (NM_001242773) -140 NM_153345 135932 Hs.17558 NM_153345 ENSG00000178826 TMEM139 - transmembrane protein 139 protein-coding 2.973 1.370 0.323 0.516 1.517 0.606 2.768 1.163 1.389 0.669 1.657 0.912 0.633 0.711 4.401 0.959 0.830 1.037 0.226 0.450 1.225 0.827 0.772 1.189 1.263 0.904 0.386 0.719 0.942 1.404 1.033 0.424 1.266 2.220 1.124 0.587 4.972 1.323 0.761 0.480 0.603 0.384 657 chr17 79667174 79671896 + 0 NA promoter-TSS (NM_002949) promoter-TSS (NM_002949) -865 NM_002949 6182 Hs.109059 NM_002949 ENSG00000262814 MRPL12 5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12 mitochondrial ribosomal protein L12 protein-coding 3.616 5.423 0.944 1.685 5.110 11.025 3.620 1.026 8.627 6.017 3.047 4.156 3.173 3.087 2.475 4.143 1.494 3.192 1.689 1.936 2.193 2.282 2.566 5.436 6.053 3.188 1.836 1.299 3.019 4.855 6.875 4.202 4.368 8.175 3.551 3.335 2.543 7.016 1.680 3.466 2.341 1.254 742 chr19 49136114 49142642 + 0 NA intron (NM_001352, intron 1 of 3) intron (NM_001352, intron 1 of 3) 1429 NM_001352 1628 Hs.414480 NM_001352 ENSG00000105516 DBP DABP D-box binding PAR bZIP transcription factor protein-coding 4.650 6.003 1.700 1.305 3.638 3.997 3.281 1.277 8.775 5.138 5.526 1.447 0.847 1.652 4.557 2.037 3.659 3.206 2.934 5.275 1.345 1.391 2.101 1.913 5.834 1.362 0.950 0.668 1.301 6.432 4.348 4.766 2.867 5.686 2.866 1.816 4.327 4.791 1.447 1.919 1.769 1.661 390 chr13 111356385 111370487 + 0 NA Intergenic Intergenic -1534 NM_198217 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 1.365 3.291 1.039 1.628 5.662 1.015 2.164 0.969 5.526 3.648 1.994 0.883 0.938 1.312 3.887 1.683 0.746 1.006 0.872 2.281 1.658 1.805 1.048 2.075 8.493 3.053 1.609 0.883 2.406 2.307 2.066 2.354 1.652 8.001 1.961 0.944 1.925 3.417 2.177 2.165 2.132 1.528 558 chr17 7163087 7170462 + 0 NA promoter-TSS (NM_001307) promoter-TSS (NM_001307) -262 NM_001185022 1366 Hs.513915 NM_001307 ENSG00000181885 CLDN7 CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1 claudin 7 protein-coding 3.576 0.824 4.291 2.209 7.210 0.896 4.453 1.606 8.361 6.298 7.569 2.033 0.288 3.146 5.250 4.363 1.962 0.524 2.481 0.150 1.286 1.027 0.160 1.302 0.362 0.368 0.266 6.527 0.804 2.036 1.979 1.332 4.354 15.001 11.554 3.111 3.287 0.457 2.140 0.409 0.116 0.062 1142 chr6 44224213 44233551 + 0 NA intron (NM_004556, intron 3 of 5) L2a|LINE|L2 -3255 NM_001286511 347734 Hs.182885 NM_178148 ENSG00000157593 SLC35B2 PAPST1|SLL|UGTrel4 solute carrier family 35 member B2 protein-coding 3.245 2.776 0.597 0.827 2.576 1.944 1.045 0.766 2.492 1.590 1.663 0.801 1.003 1.374 1.389 1.485 0.466 0.677 0.996 1.060 1.373 1.150 0.963 1.367 5.228 3.539 1.895 0.531 2.243 1.621 4.597 2.321 0.982 2.545 1.581 0.457 1.146 4.597 0.593 0.766 0.866 0.663 310 chr12 29532324 29535653 + 0 NA intron (NM_016570, intron 1 of 13) intron (NM_016570, intron 1 of 13) 155 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 3.333 4.575 2.398 1.533 4.147 1.159 5.409 0.908 5.080 5.077 4.197 0.438 8.609 1.806 4.263 2.656 1.550 3.410 1.207 0.583 2.042 1.819 0.597 1.544 1.797 1.430 0.633 1.865 4.144 1.956 2.935 1.403 3.178 7.298 2.361 1.800 1.464 2.661 1.920 6.641 1.020 0.536 108 chr1 156425516 156443311 + 0 NA 3' UTR (NM_001271629, exon 11 of 11) 3' UTR (NM_001271629, exon 11 of 11) 25978 NM_001271629 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 0.619 0.782 1.052 0.268 1.149 1.819 0.945 0.568 3.809 1.420 2.019 0.687 0.749 0.705 0.959 0.950 0.204 0.568 2.767 0.433 0.716 0.763 0.725 1.134 1.448 0.458 0.281 0.725 0.682 1.404 1.123 0.672 2.912 1.858 0.887 0.886 2.282 2.778 1.236 0.356 0.684 0.571 819 chr2 219248028 219273440 + 0 NA 3' UTR (NM_000578, exon 15 of 15) 3' UTR (NM_000578, exon 15 of 15) -2327 NM_001206878 58190 Hs.444468 NM_021198 ENSG00000144579 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD small phosphatase 1 protein-coding 1.724 3.186 1.859 1.164 2.753 5.070 2.902 0.851 7.724 4.729 2.824 1.641 1.714 1.920 2.181 2.443 1.481 1.195 1.736 3.198 1.776 2.373 2.398 3.397 3.525 1.643 0.709 1.166 1.536 4.951 3.753 1.594 2.251 2.000 3.252 1.214 2.083 7.767 1.220 3.607 0.777 0.441 761 chr2 19318845 19331438 + 0 NA Intergenic Intergenic -98415 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 0.355 0.169 0.034 0.152 0.248 0.184 0.178 0.867 1.671 0.362 0.278 0.662 2.312 0.354 0.558 2.215 0.122 1.717 0.075 0.011 0.163 0.143 0.012 0.213 0.574 0.086 0.074 0.164 1.488 0.213 0.114 0.243 0.578 0.286 0.854 0.490 0.305 0.112 0.263 0.840 0.155 0.145 116 chr1 161085464 161089548 + 0 NA promoter-TSS (NM_001185094) promoter-TSS (NM_001185094) -356 NM_005600 4817 Hs.146406 NM_005600 ENSG00000158793 NIT1 - nitrilase 1 protein-coding 4.120 3.609 1.000 2.795 5.793 6.528 3.307 2.353 9.059 7.322 3.581 3.411 5.231 4.818 2.979 4.685 1.565 3.466 2.887 2.304 3.227 2.531 1.850 4.825 6.408 4.822 2.251 1.788 4.388 3.426 4.157 2.367 2.800 7.455 5.938 3.063 1.375 11.363 5.856 2.145 2.508 1.583 1104 chr6 14728164 14749934 + 0 NA Intergenic Intergenic -453364 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 1.872 1.259 0.011 1.839 2.756 1.349 1.954 2.721 2.663 1.525 0.627 2.624 2.119 2.805 1.429 3.893 0.418 3.098 0.045 0.013 4.109 3.552 0.024 1.330 3.989 2.403 1.096 1.671 4.227 0.478 0.554 0.642 1.656 2.068 2.243 1.014 0.595 0.170 1.662 2.491 0.839 1.405 210 chr11 46292154 46304516 + 0 NA promoter-TSS (NM_052854) promoter-TSS (NM_052854) -854 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 0.321 1.891 0.015 0.536 0.613 0.072 0.127 0.230 10.535 4.748 2.560 0.307 0.259 0.889 0.327 1.713 0.047 1.136 2.300 0.303 2.370 2.141 0.196 0.040 0.196 0.572 0.335 0.050 1.296 1.200 1.143 7.167 3.103 0.262 0.307 0.514 0.355 0.525 1.378 2.370 0.033 0.008 388 chr13 107172041 107189090 + 0 NA intron (NM_004093, intron 1 of 4) intron (NM_004093, intron 1 of 4) 6823 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 1.239 1.352 1.579 1.691 4.321 0.018 0.467 0.587 4.685 2.570 0.924 0.977 0.464 0.602 2.938 1.398 0.011 0.604 0.146 0.008 1.528 1.400 0.017 0.114 1.596 0.142 0.082 0.699 0.568 0.138 0.535 0.096 0.106 3.258 0.325 0.316 0.348 0.151 0.917 1.844 0.020 0.041 142 chr1 228317152 228321245 + 0 NA Intergenic MSTC|LTR|ERVL-MaLR -8587 NM_001242839 2987 Hs.376933 NM_000858 ENSG00000143774 GUK1 GMK guanylate kinase 1 protein-coding 1.329 0.172 7.694 0.416 0.853 0.149 0.932 0.639 1.186 0.471 2.328 0.250 0.029 0.773 2.034 0.618 0.491 0.159 0.073 0.068 0.182 0.036 0.072 0.200 0.225 0.132 0.038 0.642 0.138 0.410 0.297 0.901 0.607 1.623 0.091 0.924 0.937 0.528 0.116 0.038 0.070 0.038 417 chr14 61976425 62088409 + 0 NA intron (NR_110417, intron 1 of 3) AluSz6|SINE|Alu 4495 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 1.914 2.001 0.653 0.922 2.165 0.853 1.724 2.019 3.946 2.098 2.935 2.060 1.596 2.977 1.894 2.637 0.554 2.755 0.158 0.012 4.465 3.699 0.041 2.335 1.417 1.003 0.466 1.511 1.528 1.395 0.415 1.930 3.755 1.929 1.938 1.746 0.320 0.248 2.439 3.068 0.834 0.644 220 chr11 62646949 62652255 + 0 NA intron (NM_001012662, intron 5 of 11) intron (NM_001012662, intron 5 of 11) 431 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 6.658 5.306 4.562 1.002 3.106 3.836 3.620 2.718 11.544 8.195 6.422 2.947 1.952 2.568 6.990 4.909 2.310 3.370 1.549 4.050 2.385 2.770 2.458 4.706 7.671 6.430 3.024 3.963 8.661 5.789 5.468 3.256 3.281 4.385 3.334 2.556 2.056 3.693 3.153 3.286 4.259 3.043 1189 chr7 17502815 17606051 + 0 NA intron (NR_110013, intron 1 of 3) L1MC|LINE|L1 44100 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 0.307 0.223 0.056 0.156 0.198 1.419 0.454 0.179 6.412 2.044 3.266 0.235 0.283 0.584 0.268 0.148 0.100 0.273 0.107 0.012 0.884 0.483 0.046 0.326 0.140 0.046 0.038 0.375 0.195 0.262 0.046 0.376 1.180 0.103 0.153 0.613 0.313 0.220 0.241 0.097 0.040 0.039 208 chr11 34684957 34691607 + 0 NA Intergenic Intergenic 34271 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.358 0.580 0.341 0.396 0.028 0.408 0.155 3.975 0.664 0.411 0.250 0.032 0.114 1.674 1.060 0.392 0.468 0.030 0.145 0.065 0.011 3.992 0.284 0.073 0.106 0.012 0.150 2.170 0.042 4.327 1.321 0.417 0.014 0.609 1.306 0.323 0.143 0.067 0.017 0.015 728 chr19 45593526 45605442 + 0 NA intron (NM_019121, intron 1 of 12) intron (NM_019121, intron 1 of 12) 3053 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 4.060 3.432 0.223 1.176 2.755 1.431 2.179 0.539 nan 2.286 2.513 0.944 1.495 1.136 1.750 1.319 0.873 1.880 1.505 1.029 2.195 2.330 1.448 1.289 2.284 1.124 0.563 1.246 1.277 2.364 4.964 3.849 1.132 3.314 1.073 0.770 1.836 1.628 2.814 0.832 0.996 0.684 306 chr12 27424599 27446342 + 0 NA intron (NM_015000, intron 1 of 13) L1M5|LINE|L1 38392 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 0.169 0.251 0.049 0.087 0.312 0.055 0.138 0.063 0.275 0.118 0.142 0.107 0.452 0.025 0.270 0.119 0.018 2.518 0.133 0.045 0.058 0.016 0.041 0.324 0.038 0.019 0.025 0.074 0.198 0.311 0.229 0.039 0.088 0.218 0.148 0.068 0.091 0.093 0.123 0.190 0.024 0.016 315 chr12 51155806 51184480 + 0 NA intron (NM_005171, intron 1 of 6) AluJb|SINE|Alu 12354 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 1.031 0.897 2.377 0.450 2.070 2.460 1.653 1.274 2.493 1.296 1.219 0.689 0.828 0.809 0.916 2.325 1.112 0.852 0.412 0.870 2.326 2.038 0.882 1.577 1.798 1.414 0.624 0.986 1.581 2.331 1.300 0.854 3.361 3.368 2.777 1.171 1.240 1.601 3.643 0.852 0.534 0.396 1275 chr8 128303808 128314029 + 0 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 52036 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 9.172 0.371 0.232 0.644 1.413 1.278 3.160 4.162 1.064 0.384 1.260 1.158 0.738 4.941 5.847 2.893 0.512 0.226 0.240 1.796 1.109 0.014 0.147 0.316 1.817 1.029 5.266 0.391 1.163 0.076 0.131 4.271 2.669 0.224 1.175 1.027 0.178 6.746 0.461 2.704 1.870 41 chr1 55840205 55852608 + 0 NA Intergenic Intergenic 155092 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.064 0.192 0.020 0.137 0.216 0.295 0.162 0.581 nan 0.111 0.273 0.167 0.301 0.660 0.163 3.566 0.023 0.563 0.024 0.023 0.849 0.205 0.118 0.139 0.517 0.267 0.320 0.415 0.221 0.849 0.280 0.662 0.427 0.117 0.945 0.218 0.433 0.351 0.434 0.361 0.037 0.016 730 chr19 45941184 45960584 + 0 NA Intergenic (TCTCTG)n|Simple_repeat|Simple_repeat 10972 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 3.685 1.095 0.490 0.558 1.309 1.704 1.349 0.485 nan 1.599 2.048 0.609 0.316 0.747 2.316 1.194 0.915 2.918 0.658 0.959 0.499 0.418 0.465 0.830 0.945 1.031 0.535 0.496 1.335 2.425 5.102 0.544 0.942 5.317 0.528 0.688 1.979 2.414 0.192 0.513 1.514 0.846 548 chr17 1546608 1550594 + 0 NA TTS (NM_031430) TTS (NM_031430) 482 NM_003693 8578 Hs.647430 NM_003693 ENSG00000074660 SCARF1 SREC|SREC-I|SREC1 scavenger receptor class F member 1 protein-coding 0.579 1.285 0.236 1.920 3.210 0.170 2.258 0.505 2.784 1.319 1.925 0.695 1.125 2.021 0.700 2.613 0.133 0.371 0.310 0.139 0.351 0.234 0.097 0.144 4.599 0.592 0.392 2.954 0.958 0.674 2.838 0.139 0.182 2.498 11.697 0.554 0.415 3.191 0.495 0.498 0.708 0.406 336 chr12 58225322 58241689 + 0 NA intron (NM_005730, intron 1 of 7) AluY|SINE|Alu 7242 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 1.753 1.526 1.160 0.282 1.270 1.927 1.660 0.497 5.034 3.986 3.686 0.742 1.124 0.977 1.264 0.902 0.706 2.612 1.203 2.442 1.299 1.342 1.635 1.066 2.176 2.372 1.106 0.812 2.015 2.337 4.857 1.004 1.246 1.744 12.112 0.517 0.969 4.046 1.138 0.861 0.991 0.534 1145 chr6 45663370 45683848 + 0 NA Intergenic Intergenic 231725 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 0.178 2.584 0.031 0.463 0.520 0.064 0.095 1.030 1.897 0.452 0.567 1.412 0.552 0.257 0.508 2.328 0.055 3.177 0.032 0.061 0.307 0.081 0.019 0.653 0.121 0.637 0.192 0.259 1.621 0.068 0.249 0.564 0.261 0.347 0.051 0.300 0.073 0.136 0.924 1.816 0.127 0.128 1044 chr5 43057072 43074943 + 0 NA non-coding (NR_034127, exon 1 of 1) non-coding (NR_034127, exon 1 of 1) 1066 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 2.536 2.200 1.457 0.911 1.928 4.132 3.488 2.388 7.357 5.584 5.786 1.196 2.356 2.284 3.006 4.752 1.130 2.528 1.224 3.466 5.177 6.104 1.006 3.164 2.783 3.141 1.257 4.156 1.963 2.690 3.279 2.862 3.215 3.901 4.649 1.414 1.745 4.187 4.277 2.337 4.090 3.903 1140 chr6 42415051 42422935 + 0 NA 5' UTR (NM_001297573, exon 2 of 18) 5' UTR (NM_001297573, exon 2 of 18) 796 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 1.743 2.143 0.833 0.964 2.905 1.573 2.670 1.252 2.680 1.286 0.564 1.371 1.258 0.871 2.489 4.633 0.796 2.385 0.963 2.352 3.544 5.051 1.099 1.887 1.300 1.266 0.889 0.795 8.697 2.539 4.121 1.827 1.403 2.384 5.948 0.436 1.114 5.962 1.919 1.718 1.271 0.697 1174 chr7 1703302 1710774 + 0 NA Intergenic CpG -41760 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 0.230 0.189 0.050 0.070 0.025 0.117 0.042 nan 0.333 0.158 0.019 0.236 0.038 0.076 0.358 0.325 0.202 0.994 0.178 0.068 0.522 0.060 0.743 0.367 0.219 0.082 0.442 1.427 7.701 0.095 0.053 0.096 0.473 0.034 0.144 10.219 0.037 0.036 0.116 0.124 970 chr3 160383403 160398802 + 0 NA Intergenic Intergenic -3846 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 4.308 0.479 0.020 1.268 2.030 0.087 1.638 1.182 0.796 0.607 0.500 1.900 0.175 1.890 1.285 4.598 0.701 1.935 0.191 0.027 1.907 1.386 0.047 0.080 4.439 0.646 0.253 1.668 1.077 0.555 1.212 1.839 3.540 0.989 0.128 0.857 0.404 4.285 1.167 0.468 0.052 0.043 636 chr17 62500765 62504467 + 0 NA promoter-TSS (NM_001320597) promoter-TSS (NM_001320597) 23 NM_004396 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 4.308 7.974 2.288 2.141 7.316 4.179 4.816 2.805 17.612 12.030 7.489 4.280 4.645 5.238 5.463 5.551 2.630 3.725 2.648 5.586 4.722 6.005 3.049 7.017 6.014 4.797 1.993 3.042 6.863 8.189 6.508 4.141 4.937 14.230 3.517 4.303 4.877 8.349 5.732 6.807 4.335 2.822 1057 chr5 68529445 68536821 + 0 NA intron (NM_001324070, intron 2 of 8) L2a|LINE|L2 2511 NM_001324072 1022 Hs.184298 NM_001799 ENSG00000134058 CDK7 CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15 cyclin dependent kinase 7 protein-coding 1.719 1.689 0.376 0.525 1.703 1.092 1.575 1.939 1.236 1.027 0.880 0.474 0.590 1.055 1.815 2.044 0.415 0.990 0.284 0.224 1.940 1.552 1.389 0.781 1.312 1.552 0.872 0.664 0.529 0.889 2.098 0.491 1.031 1.696 5.705 0.512 0.571 0.974 1.383 0.567 1.557 1.446 653 chr17 78799567 78808609 + 0 NA intron (NM_001163034, intron 9 of 29) intron (NM_001163034, intron 9 of 29) -24656 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 0.625 2.800 0.032 1.904 1.990 0.778 0.901 0.664 1.671 0.474 0.494 2.520 2.467 2.037 0.258 3.744 0.074 2.070 0.509 0.030 2.386 2.417 0.050 1.962 10.142 1.000 0.433 0.686 3.923 1.123 2.578 0.437 2.317 2.580 2.162 0.570 0.730 0.962 1.363 2.757 0.771 0.606 634 chr17 60931863 60981091 + 0 NA Intergenic Intergenic -65099 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 0.245 0.364 0.030 0.220 0.418 0.061 0.288 0.267 5.643 1.908 1.392 0.480 0.199 0.434 0.874 1.086 0.170 0.437 0.035 0.020 0.496 0.266 0.062 0.086 0.201 0.067 0.057 0.137 0.237 0.192 0.153 0.303 0.841 0.354 0.414 0.489 0.555 0.138 0.264 0.241 0.027 0.015 1256 chr8 81657782 81667464 + 0 NA intron (NM_001033723, intron 2 of 8) MER33|DNA|hAT-Charlie 124393 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 0.135 0.170 3.728 0.274 0.896 0.500 0.679 0.087 6.302 1.964 4.120 1.221 0.121 0.675 3.466 0.372 1.437 0.824 0.083 0.014 0.469 0.238 0.023 0.085 0.066 0.056 0.032 0.483 0.247 0.572 0.191 0.342 2.622 0.859 0.048 0.853 1.855 0.066 0.138 0.055 0.042 0.021 668 chr18 3440825 3467311 + 0 NA intron (NM_173211, intron 1 of 2) intron (NM_173211, intron 1 of 2) 296 NM_173211 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 3.615 3.965 1.829 1.330 3.232 4.570 4.162 1.183 4.977 4.013 3.744 1.634 1.179 1.773 3.430 1.643 2.209 1.664 4.046 2.564 1.492 1.914 1.365 2.818 6.748 2.588 1.201 1.749 5.056 4.000 3.828 3.599 4.579 3.955 2.210 1.963 5.244 7.226 2.297 1.811 1.748 1.360 997 chr4 38598368 38628352 + 0 NA TTS (NR_026804) TTS (NR_026804) -52430 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 0.226 0.094 0.233 0.297 0.419 0.044 0.314 0.201 7.517 2.407 1.717 0.536 0.098 0.398 0.636 0.563 0.019 0.179 0.183 0.019 0.399 0.190 0.054 0.190 0.141 0.052 0.031 0.189 0.185 0.593 0.090 0.319 1.014 0.376 0.327 0.663 0.538 0.095 0.140 0.044 0.042 0.018 452 chr15 67049595 67072921 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 66584 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 1.179 1.345 0.524 0.604 1.196 3.268 0.567 0.773 1.087 0.270 1.512 0.855 0.471 0.852 0.417 1.868 0.976 2.208 0.042 0.232 1.433 0.983 0.511 0.213 1.061 0.168 0.124 0.912 0.696 3.429 0.536 2.142 2.703 1.677 0.219 0.929 0.670 0.286 0.829 0.658 0.164 0.147 460 chr15 72514286 72532942 + 0 NA 5' UTR (NM_001206796, exon 1 of 12) 5' UTR (NM_001206796, exon 1 of 12) 351 NM_002654 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 4.748 4.995 2.584 1.531 4.092 5.447 4.112 2.656 5.309 3.041 2.126 3.651 2.457 3.060 5.041 3.707 2.118 4.654 0.572 1.094 3.679 4.571 2.018 6.125 6.742 3.355 1.378 1.727 12.153 5.413 4.330 3.169 4.815 2.847 4.272 3.694 1.506 3.015 3.298 4.738 3.813 3.619 1062 chr5 72742043 72748076 + 0 NA promoter-TSS (NM_004472) promoter-TSS (NM_004472) -707 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 2.864 1.984 0.944 0.460 2.181 1.766 0.395 1.049 2.235 0.521 3.021 1.171 0.585 0.044 1.496 1.252 0.691 1.716 0.215 1.375 0.847 0.683 1.343 0.640 6.217 3.308 1.560 0.396 3.558 3.567 7.906 0.655 0.055 3.805 1.108 0.481 0.411 6.602 0.235 0.024 5.796 5.094 424 chr14 75024247 75055138 + 0 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 39342 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 1.564 1.570 1.225 1.029 1.402 3.474 3.891 3.027 5.018 2.300 3.161 2.524 1.417 1.860 5.719 3.229 0.432 2.034 0.032 0.022 4.302 3.738 0.145 0.421 2.868 1.204 0.610 2.300 3.315 0.461 1.674 0.043 1.966 1.147 1.873 0.797 0.314 0.637 2.189 5.623 6.634 5.977 43 chr1 55928844 55947068 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 246642 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.086 0.149 0.027 0.463 0.277 0.139 0.101 0.383 nan 0.089 0.198 0.386 0.188 1.696 0.321 3.916 0.037 0.309 0.038 0.873 0.354 0.048 0.118 0.465 0.073 0.077 0.250 0.253 0.871 0.097 0.725 0.944 0.121 0.688 0.395 0.315 0.182 0.455 0.205 0.019 0.020 234 chr11 65374790 65384200 + 0 NA intron (NM_002419, intron 1 of 9) intron (NM_002419, intron 1 of 9) 2225 NM_002419 4296 Hs.502872 NM_002419 ENSG00000173327 MAP3K11 MEKK11|MLK-3|MLK3|PTK1|SPRK mitogen-activated protein kinase kinase kinase 11 protein-coding 2.468 2.882 0.842 0.762 2.601 2.697 1.776 0.997 5.196 4.084 2.731 1.407 1.086 2.345 3.210 2.074 1.165 1.482 1.884 1.740 1.752 1.775 2.234 2.124 7.844 3.534 1.879 1.883 2.242 3.465 3.644 1.024 2.510 4.216 3.418 1.321 2.326 3.727 1.513 1.577 1.156 0.764 718 chr19 39460905 39469763 + 0 NA intron (NR_104026, intron 1 of 5) HAL1|LINE|L1 1119 NR_104026 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 3.555 2.689 0.293 0.967 1.240 0.084 0.714 0.648 0.667 0.363 0.214 0.646 0.974 0.037 0.163 0.612 1.534 1.632 0.024 1.454 0.171 0.097 2.258 1.088 3.104 3.994 2.010 0.206 1.049 6.369 7.868 0.863 0.565 1.226 2.056 0.028 0.329 3.034 0.621 0.025 1.125 0.557 724 chr19 42688541 42726333 + 0 NA intron (NR_073049, intron 3 of 4) L2c|LINE|L2 14507 NR_073050 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 1.414 1.628 0.133 1.084 2.187 0.414 1.050 0.725 nan 1.592 0.978 0.805 1.043 1.487 1.092 1.618 0.484 1.049 0.635 0.196 1.034 0.953 0.782 0.392 1.089 0.710 0.329 0.727 0.669 1.506 3.064 0.612 0.809 1.718 0.337 1.084 1.127 0.698 0.274 0.613 0.282 0.169 1185 chr7 17123835 17144419 + 0 NA Intergenic Intergenic -204149 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 0.225 0.233 0.033 0.056 0.128 6.320 0.211 0.107 1.236 0.171 0.906 0.141 0.017 0.296 0.322 0.145 1.318 0.175 0.252 0.007 0.432 0.211 0.011 0.146 1.079 0.038 0.053 0.146 0.107 0.694 0.055 0.877 1.484 0.073 0.117 0.864 1.106 1.078 0.817 0.328 0.017 0.005 1316 chr9 127413760 127438200 + 0 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 5265 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 3.294 0.146 1.648 0.441 1.680 0.197 3.092 0.911 1.760 1.862 1.458 0.827 0.416 1.134 1.925 1.114 0.872 1.150 0.025 0.408 1.127 0.936 0.530 1.546 2.493 0.854 0.398 1.537 1.702 0.520 0.899 0.438 0.844 1.523 1.252 0.212 0.435 0.680 1.553 0.755 0.643 0.513 1091 chr5 172323728 172340125 + 0 NA intron (NM_001031711, intron 3 of 9) intron (NM_001031711, intron 3 of 9) -53806 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 1.444 1.988 3.162 0.718 1.327 3.491 3.607 1.947 2.871 1.979 1.526 0.722 0.604 1.961 0.761 1.623 1.311 0.215 0.578 0.076 1.411 1.218 1.490 0.772 2.772 0.954 0.416 1.425 0.427 1.532 0.293 2.943 0.991 3.652 2.436 0.529 2.656 0.295 1.027 0.485 4.139 2.898 138 chr1 223058772 223064280 + 0 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 73095 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 0.289 0.200 8.572 0.034 0.115 0.127 0.099 0.268 0.058 0.668 0.133 0.022 0.020 0.263 0.026 0.105 0.309 0.061 0.126 0.013 0.027 0.204 0.117 0.011 0.042 0.042 0.075 0.063 0.039 0.043 0.351 0.091 0.083 0.022 0.270 0.042 0.156 0.055 0.021 0.009 435 chr14 103797493 103803215 + 0 NA promoter-TSS (NM_001969) promoter-TSS (NM_001969) 15 NM_001969 1983 Hs.433702 NM_001969 ENSG00000100664 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 4.600 3.918 4.181 0.233 1.945 7.637 4.716 2.088 8.838 7.482 6.899 2.225 1.708 2.137 12.889 2.366 2.015 2.689 2.367 4.993 5.205 7.129 1.508 8.563 4.038 5.463 2.965 3.371 4.566 6.217 11.004 1.930 7.216 3.058 4.951 2.868 3.698 4.884 3.809 6.133 2.134 1.711 485 chr16 3054064 3064601 + 0 NA Intergenic AluSg|SINE|Alu -3125 NM_020982 9080 Hs.296949 NM_020982 ENSG00000213937 CLDN9 - claudin 9 protein-coding 11.436 0.343 2.090 1.334 2.988 0.083 2.251 1.234 7.928 3.971 4.019 2.030 0.202 0.488 4.189 3.327 2.701 0.219 0.265 0.302 0.470 0.199 0.643 0.093 0.933 0.258 0.208 2.102 0.279 0.394 0.602 0.570 1.385 4.760 0.455 0.509 3.218 1.073 0.608 0.105 0.060 0.033 554 chr17 4868829 4873763 + 0 NA promoter-TSS (NM_004890) promoter-TSS (NM_004890) -164 NM_004890 9552 Hs.90436 NM_004890 ENSG00000091640 SPAG7 ACRP|FSA-1 sperm associated antigen 7 protein-coding 2.187 4.859 1.537 3.181 5.726 5.871 6.589 1.860 12.690 9.155 4.748 2.177 2.833 3.777 4.916 5.033 1.509 6.218 2.093 3.057 2.036 2.876 2.144 7.275 12.274 2.714 1.337 6.704 3.783 5.619 5.106 3.610 3.142 5.941 9.083 2.801 2.191 9.610 6.495 4.659 5.025 3.292 1254 chr8 77584775 77600432 + 0 NA promoter-TSS (NM_024721) promoter-TSS (NM_024721) -912 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 0.842 0.135 4.322 1.316 3.389 0.230 0.112 0.430 5.644 2.496 0.239 0.214 0.369 1.712 0.068 0.142 0.061 2.605 0.058 3.119 0.428 0.217 0.864 0.338 0.459 0.061 0.069 0.211 0.719 0.504 3.648 0.136 0.050 2.595 0.030 0.078 0.174 0.465 0.055 0.010 0.022 0.016 655 chr17 78861852 78869144 + 0 NA intron (NM_020761, intron 17 of 33) intron (NM_020761, intron 17 of 33) -86066 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 0.541 4.200 1.848 3.954 0.971 2.729 2.072 1.838 0.836 0.511 4.551 3.281 3.700 0.438 6.435 0.563 2.311 0.028 0.076 1.577 1.664 0.116 2.014 9.646 1.281 0.471 1.995 10.084 0.442 0.350 0.075 1.250 3.932 4.137 0.706 0.113 0.569 3.445 6.805 3.949 3.032 506 chr16 25056626 25067367 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger -16212 NR_135196 283887 Hs.652665 NR_135196 ENSG00000262155 LOC283887 - uncharacterized LOC283887 ncRNA 1.740 1.874 0.064 1.227 1.528 5.261 1.240 0.508 2.092 0.762 0.476 0.817 0.820 2.160 1.505 3.048 0.922 2.338 0.401 0.091 2.519 2.161 0.663 6.269 3.792 1.128 0.501 1.107 3.314 2.877 1.508 2.926 1.923 1.094 5.746 0.822 0.554 3.048 1.665 1.113 0.869 0.829 69 chr1 150889247 150900929 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -3727 NM_012432 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated 1 protein-coding 0.687 1.153 0.972 0.764 1.741 0.809 0.539 0.387 12.863 9.719 0.791 0.927 0.748 0.851 1.006 1.814 0.449 1.211 0.914 0.856 0.971 0.901 0.525 1.577 1.514 1.089 0.520 0.328 1.028 0.794 1.734 1.980 1.960 1.543 1.090 0.397 1.299 2.561 1.302 0.469 0.572 0.362 565 chr17 9547153 9554370 + 0 NA intron (NM_153210, intron 1 of 14) MIR|SINE|MIR 1907 NM_153210 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 1.950 1.157 8.439 0.712 2.671 4.660 1.928 0.820 2.709 2.352 3.120 1.068 0.523 2.018 1.587 2.171 1.905 0.270 0.763 0.614 1.802 1.513 0.929 1.595 5.852 4.443 1.598 3.151 1.835 3.769 3.761 1.519 1.438 4.846 3.210 1.237 1.695 2.967 3.121 1.734 4.333 2.522 201 chr11 9480636 9484650 + 0 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) 131 NM_003442 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 5.522 8.593 4.638 1.750 4.901 5.564 4.487 3.078 10.437 9.443 7.263 2.360 2.693 4.043 6.072 5.905 1.785 4.724 3.802 5.179 4.593 6.383 4.325 8.023 11.785 8.711 4.071 2.791 8.001 7.054 4.652 4.535 4.277 7.927 8.212 3.764 3.536 7.421 7.043 5.657 4.108 3.525 298 chr12 15079506 15089434 + 0 NA intron (NM_152321, intron 3 of 6) intron (NM_152321, intron 3 of 6) -2411 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 0.840 0.175 2.457 0.500 1.299 0.082 2.602 1.980 4.257 1.631 5.493 0.756 0.036 0.619 3.564 0.890 1.160 0.319 0.112 0.014 0.028 0.040 0.022 0.071 0.047 0.016 1.228 0.173 0.057 0.086 0.063 0.817 0.484 0.009 0.469 1.899 0.033 0.071 0.015 0.018 0.016 1042 chr5 38591433 38616719 + 0 NA intron (NR_103554, intron 2 of 8) L2a|LINE|L2 -8569 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 0.271 0.335 0.269 0.863 1.303 0.343 0.396 0.325 3.300 0.721 2.290 0.901 0.356 0.539 0.278 1.139 0.084 3.283 0.047 0.038 0.891 0.265 0.105 0.480 0.247 0.062 0.059 0.527 0.142 0.342 0.143 0.205 0.676 0.919 0.857 0.367 0.284 0.458 0.881 0.284 0.071 0.085 24 chr1 25321052 25434284 + 0 NA Intergenic L2b|LINE|L2 27674 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 0.281 0.155 0.010 0.025 0.095 0.026 0.066 0.056 6.019 1.522 0.294 0.157 0.101 0.069 0.054 0.359 0.011 0.240 0.181 0.038 0.342 0.155 0.065 1.342 0.575 0.118 0.061 0.096 0.155 0.173 0.357 0.034 0.109 0.095 0.040 0.043 0.072 0.148 0.134 0.402 0.400 0.346 1235 chr8 37739460 37775192 + 0 NA promoter-TSS (NM_025151) promoter-TSS (NM_025151) -311 NM_025151 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 4.640 0.291 2.364 0.377 0.708 0.078 1.832 1.664 2.392 0.989 2.502 0.791 0.155 1.714 1.600 1.303 0.219 0.257 0.472 0.245 1.158 0.779 0.118 0.106 0.379 0.276 0.281 1.167 0.221 0.799 0.340 0.124 0.602 1.873 0.770 0.752 0.930 0.315 0.359 0.141 0.069 0.033 367 chr12 125149350 125189106 + 0 NA Intergenic Intergenic -117218 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.386 0.347 1.251 0.425 0.631 0.170 0.226 1.071 4.452 1.400 1.035 0.807 0.169 0.468 1.429 1.913 0.894 1.330 0.140 0.042 1.391 1.054 0.147 2.103 0.640 0.193 0.108 0.741 1.364 1.663 0.620 0.063 0.567 1.540 0.298 0.927 0.774 1.655 0.393 0.599 0.377 0.295 924 chr22 42223790 42243818 + 0 NA intron (NM_004599, intron 1 of 18) AluSp|SINE|Alu 4721 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 2.126 0.755 0.738 0.339 1.243 0.660 1.259 0.608 5.996 1.780 2.945 0.344 0.171 0.461 3.041 1.229 0.785 0.812 0.805 0.731 0.692 0.551 0.401 0.822 1.059 0.951 0.490 0.454 0.592 1.283 1.360 0.914 2.483 1.560 1.102 0.726 1.273 0.867 0.786 0.438 0.311 0.254 74 chr1 151368377 151374517 + 0 NA promoter-TSS (NM_002796) promoter-TSS (NM_002796) -594 NM_002796 5692 Hs.89545 NM_002796 ENSG00000159377 PSMB4 HN3|HsN3|PROS-26|PROS26 proteasome subunit beta 4 protein-coding 1.780 1.639 0.715 1.172 2.311 2.076 1.498 0.821 15.815 11.151 1.088 1.393 1.478 1.987 1.858 2.585 0.544 1.952 1.136 0.731 1.803 1.362 1.397 2.835 3.080 2.880 1.341 0.672 1.369 1.973 2.345 4.147 3.136 2.945 1.748 1.193 1.972 4.416 2.319 0.686 1.641 0.956 928 chr22 50707456 50755518 + 0 NA intron (NM_012401, intron 2 of 36) intron (NM_012401, intron 2 of 36) 14514 NM_012401 23654 Hs.3989 NM_012401 ENSG00000196576 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 3.462 2.174 1.074 0.844 2.334 0.826 3.706 1.050 8.527 5.281 6.427 1.259 0.592 1.377 2.717 1.334 1.409 0.332 0.647 0.273 0.804 0.887 0.809 0.718 2.235 1.072 0.442 1.166 0.506 1.890 1.125 0.602 1.361 2.036 0.518 0.961 2.910 1.453 0.577 0.930 0.453 0.290 1279 chr8 129042750 129049814 + 0 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -15116 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 0.486 0.697 0.017 1.162 1.989 0.527 0.966 0.806 4.561 2.569 1.033 0.579 0.953 0.587 0.545 1.835 0.054 43.791 0.451 0.099 1.299 0.500 0.198 4.533 0.480 0.316 0.202 0.259 0.593 1.648 0.589 0.391 1.030 5.969 2.114 0.086 0.593 1.835 4.641 0.290 0.065 0.036 923 chr22 41486488 41490418 + 0 NA promoter-TSS (NM_001429) promoter-TSS (NM_001429) -64 NR_031694 100302237 NR_031694 ENSG00000100393 MIR1281 MIRN1281|hsa-mir-1281 microRNA 1281 ncRNA 10.305 6.620 3.194 1.160 5.189 7.402 10.656 2.837 14.305 11.956 13.003 2.234 1.502 2.211 8.929 2.658 3.507 2.053 2.321 5.221 1.880 3.496 2.838 4.800 6.960 5.835 2.177 2.996 4.252 6.169 2.807 4.334 6.763 9.090 4.523 1.680 5.891 7.946 4.689 3.489 2.403 1.505 277 chr11 129235316 129251022 + 0 NA Intergenic CpG -2712 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 2.037 0.070 5.023 0.277 0.466 0.040 0.174 0.759 1.370 0.478 0.809 0.694 0.496 0.243 0.963 0.941 0.825 0.070 0.019 0.009 0.093 0.023 0.200 0.021 0.271 0.276 0.159 0.118 0.303 0.093 0.933 0.889 1.292 0.617 0.213 0.312 1.139 0.592 0.518 0.039 0.055 0.026 1054 chr5 57026549 57042545 + 0 NA Intergenic Intergenic 88060 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 0.636 0.612 0.016 0.901 1.155 0.337 0.950 1.978 0.259 0.188 0.199 1.463 0.862 1.517 1.511 2.241 0.089 3.762 0.056 0.630 0.279 0.074 0.117 1.208 0.905 0.672 0.559 1.481 0.178 0.559 0.054 0.213 0.267 0.366 0.315 0.171 0.129 0.820 0.122 0.421 0.534 587 chr17 37616393 37621835 + 0 NA exon (NM_015083, exon 1 of 14) exon (NM_015083, exon 1 of 14) 1350 NM_016507 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 10.596 3.621 0.947 1.497 4.062 3.722 2.514 1.008 2.239 1.271 2.230 1.320 1.562 2.380 3.046 2.182 1.418 1.434 0.660 1.461 2.766 2.655 1.754 2.543 4.163 2.576 1.294 1.142 2.596 4.372 2.667 1.988 2.550 5.393 1.796 1.306 2.219 3.508 2.450 1.130 1.196 0.847 988 chr4 50227 55838 + 0 NA promoter-TSS (NM_001039127) promoter-TSS (NM_001039127) -147 NM_001286052 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 0.784 5.671 1.634 2.306 8.364 0.124 1.473 0.563 2.342 1.176 0.744 2.061 0.459 1.024 0.593 1.697 0.272 0.870 0.697 1.185 0.665 0.607 0.105 0.814 1.938 1.579 0.796 0.551 1.460 1.999 3.379 2.662 0.700 6.182 1.250 0.391 1.363 0.508 0.848 0.778 0.144 0.063 1156 chr6 113667916 113690560 + 0 NA Intergenic Intergenic 292039 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 0.641 0.470 0.036 1.115 1.388 0.172 1.701 1.195 6.283 2.144 1.680 1.311 1.233 0.988 1.793 2.073 0.157 3.985 0.036 0.031 1.531 0.939 0.045 0.045 1.354 1.255 0.568 1.819 3.465 0.280 0.806 0.025 0.165 0.773 0.176 0.448 0.120 0.079 0.847 1.698 1.846 1.685 1306 chr9 102580798 102586783 + 0 NA promoter-TSS (NM_173200) promoter-TSS (NM_173200) -347 NM_006981 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 0.935 1.051 0.340 0.506 1.397 2.021 1.358 0.390 2.896 2.728 0.861 0.793 0.428 0.758 0.725 1.208 0.337 1.173 0.512 0.900 1.790 1.345 3.120 2.944 1.645 1.535 0.830 0.270 1.134 2.945 4.487 3.007 2.047 6.463 0.935 0.735 2.273 5.350 0.794 0.908 0.924 0.656 262 chr11 101978739 101993324 + 0 NA intron (NM_001282100, intron 2 of 7) intron (NM_001282100, intron 2 of 7) 2860 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 2.015 3.536 4.834 0.833 2.706 4.224 3.413 1.332 5.272 4.020 4.983 1.445 1.761 2.193 5.662 2.727 2.014 2.122 0.062 3.185 3.265 3.552 1.431 2.190 6.901 3.639 1.483 2.765 4.404 2.716 2.597 1.872 5.349 2.631 4.472 1.788 2.197 3.038 2.880 2.766 3.151 3.297 1291 chr8 145741803 145750620 + 0 NA intron (NM_014665, intron 3 of 3) intron (NM_014665, intron 3 of 3) 2862 NM_014665 9684 Hs.459391 NM_014665 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 5.693 4.645 0.488 0.922 3.590 4.305 4.249 1.190 6.081 3.685 3.141 1.535 1.101 1.215 4.996 2.668 0.806 1.359 2.400 0.519 1.801 2.061 1.299 2.335 1.112 2.735 1.375 0.235 2.563 3.478 1.737 2.472 2.102 3.440 2.465 0.970 2.404 0.739 1.229 1.323 1.951 0.864 837 chr20 3141975 3155422 + 0 NA intron (NM_001282533, intron 1 of 5) CpG 5540 NM_001282533 9762 Hs.90232 NM_014731 ENSG00000088899 LZTS3 PROSAPIP1 leucine zipper tumor suppressor family member 3 protein-coding 0.249 0.669 0.616 0.097 0.356 0.193 0.249 0.322 1.700 0.657 0.726 0.185 0.087 0.574 0.342 0.259 0.210 0.366 3.497 0.355 0.208 0.102 0.313 0.261 0.906 0.636 0.416 0.194 0.216 1.090 0.758 0.921 1.004 0.227 0.384 0.309 0.375 0.809 0.304 0.112 0.289 0.125 780 chr2 70308360 70324296 + 0 NA TTS (NM_006196) TTS (NM_006196) 1743 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding 2.465 3.327 2.383 1.620 3.789 5.473 5.418 2.025 10.878 6.247 4.378 2.498 1.959 3.085 2.904 3.950 1.839 2.446 2.945 3.521 3.534 4.133 1.864 4.692 4.336 2.460 1.145 3.119 4.026 5.209 3.476 2.897 3.880 5.169 3.634 2.655 2.729 5.518 2.096 2.703 2.513 2.617 49 chr1 62900666 62904374 + 0 NA 5' UTR (NM_003368, exon 1 of 9) 5' UTR (NM_003368, exon 1 of 9) 137 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 8.253 6.373 3.481 3.267 9.061 6.254 7.743 2.525 12.279 6.994 5.264 3.087 2.502 4.283 6.242 5.845 3.228 3.845 4.633 5.939 4.439 5.576 4.704 8.368 12.347 6.444 2.566 6.406 7.532 4.807 6.303 3.018 3.628 11.835 7.341 2.502 6.639 8.957 4.465 4.045 5.833 4.448 765 chr2 27575767 27581079 + 0 NA intron (NM_001521, intron 1 of 19) intron (NM_001521, intron 1 of 19) 936 NM_001318909 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 3.046 3.142 2.645 2.029 5.631 3.349 5.813 1.644 10.412 7.504 4.885 2.363 3.048 3.667 4.389 4.063 1.316 4.046 1.441 2.564 1.580 1.953 2.175 4.013 7.443 3.514 1.811 2.910 3.050 4.521 4.658 2.786 3.038 8.186 7.352 2.687 2.720 5.089 3.481 2.344 2.830 2.158 1036 chr5 17212979 17225934 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 1786 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 0.189 1.123 0.653 0.834 3.106 4.195 0.298 0.546 3.939 1.580 1.944 0.544 0.674 0.295 0.044 1.888 0.736 0.641 0.054 0.450 1.133 0.993 1.014 2.132 0.135 0.312 0.204 0.528 1.293 2.435 0.832 0.316 0.389 1.182 0.035 0.813 3.046 3.258 1.397 0.146 0.040 0.016 523 chr16 67061910 67065083 + 0 NA intron (NM_001755, intron 1 of 5) CpG 446 NM_022845 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor beta subunit protein-coding 6.756 4.349 0.937 1.253 6.161 5.517 5.039 1.294 4.697 2.793 3.620 1.430 1.615 1.782 4.706 3.139 3.430 4.513 2.139 4.521 3.964 4.680 5.222 5.780 7.076 11.241 5.050 2.184 5.279 6.285 7.421 3.848 6.110 6.595 5.448 2.467 2.621 6.741 3.374 2.962 2.894 1.630 227 chr11 64602025 64647670 + 0 NA intron (NM_006795, intron 3 of 4) AluSx1|SINE|Alu -12806 NM_017525 55561 Hs.293590 NM_017525 ENSG00000171219 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma protein-coding 2.348 1.660 1.403 1.158 2.362 2.165 1.896 1.565 4.557 2.288 2.193 1.900 1.385 1.448 1.751 2.801 1.241 0.969 0.528 0.294 1.982 1.899 1.042 0.893 2.516 3.745 1.722 1.302 3.652 2.314 2.342 0.301 0.951 2.642 1.950 1.022 1.165 1.286 1.406 1.887 0.679 0.424 1218 chr7 113721790 113729178 + 0 NA promoter-TSS (NR_033766) promoter-TSS (NR_033766) -881 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 2.352 0.369 0.050 0.232 0.577 0.017 5.625 0.028 4.888 3.403 2.488 0.713 0.497 1.426 0.334 0.853 4.299 1.860 1.782 0.719 0.529 0.487 0.052 0.735 0.197 0.148 1.695 1.256 0.460 2.047 4.982 3.235 0.330 0.345 1.654 4.268 1.567 0.011 0.061 0.016 0.007 478 chr16 375239 381862 + 0 NA intron (NM_003502, intron 2 of 10) AluSp|SINE|Alu 24126 NM_003502 8312 Hs.592082 NM_003502 ENSG00000103126 AXIN1 AXIN|PPP1R49 axin 1 protein-coding 1.300 0.816 0.009 0.517 1.598 1.332 3.278 0.634 6.911 3.318 2.447 0.507 0.766 0.831 1.094 2.741 0.275 0.724 0.695 0.073 1.868 1.512 0.339 1.173 1.092 0.416 0.219 2.224 0.347 3.782 0.885 4.814 3.485 3.120 2.613 0.495 2.164 0.149 1.318 0.133 0.356 0.239 966 chr3 147084803 147143735 + 0 NA intron (NM_001168378, intron 2 of 4) CpG-19034 -4052 NR_040762 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 0.140 0.132 0.247 0.093 0.132 0.026 0.096 0.009 0.111 0.081 0.077 0.047 0.006 0.039 0.055 0.051 0.008 0.163 0.027 5.459 0.007 0.022 0.177 0.035 0.453 0.030 0.024 0.046 0.143 0.062 0.297 0.034 0.033 0.117 0.019 0.021 0.201 0.426 0.020 0.014 0.016 0.004 487 chr16 4315457 4330622 + 0 NA promoter-TSS (NM_003223) promoter-TSS (NM_003223) -38 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 2.029 2.527 0.193 0.524 1.634 1.176 2.438 0.729 3.929 2.022 1.273 0.744 0.405 0.855 1.343 1.750 0.631 0.936 0.533 0.931 1.383 1.667 1.442 2.160 2.043 1.312 0.541 1.123 1.412 2.545 1.584 2.008 4.096 1.948 1.959 0.758 1.072 2.495 1.618 0.855 0.649 0.420 959 chr3 128940340 128969550 + 0 NA Intergenic AluJb|SINE|Alu -13508 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 0.797 1.612 0.070 0.838 1.039 0.326 1.676 1.041 1.790 0.694 1.107 0.737 0.752 0.792 1.146 3.735 1.014 1.311 0.333 0.203 3.457 3.264 0.434 1.226 1.283 0.475 0.310 0.418 1.401 1.438 1.973 1.819 3.015 0.937 4.311 0.633 0.743 1.607 1.575 0.748 0.177 0.114 124 chr1 173833237 173840280 + 0 NA promoter-TSS (NR_003942) promoter-TSS (NR_003942) 125 NR_002579 619498 NR_002579 SNORD74 SNORD74A|U74|Z18 small nucleolar RNA, C/D box 74 snoRNA 3.260 2.437 1.176 1.487 3.564 1.257 2.706 2.322 4.011 3.864 3.496 2.176 0.974 4.251 4.065 3.087 1.515 2.391 0.681 2.047 2.705 2.751 1.925 6.283 3.469 3.875 1.620 1.730 1.877 2.378 2.625 2.328 3.011 3.360 4.357 1.421 2.125 2.505 2.081 1.101 1.742 1.237 727 chr19 45576962 45584952 + 0 NA Intergenic Intergenic -1111 NM_145288 162979 Hs.192237 NM_145288 ENSG00000170684 ZNF296 ZFP296|ZNF342 zinc finger protein 296 protein-coding 3.119 2.793 0.296 0.997 2.346 1.292 1.847 0.769 nan 1.798 1.954 0.824 1.181 1.667 1.886 1.550 1.870 1.994 0.747 0.451 1.369 1.229 2.377 1.800 2.930 1.390 0.917 0.433 0.860 3.605 7.695 1.749 1.239 2.206 1.554 1.318 1.874 2.863 1.965 1.047 0.686 0.438 434 chr14 103619266 103629696 + 0 NA Intergenic L1MEc|LINE|L1 30884 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 0.208 0.498 0.071 0.311 0.475 0.089 0.229 0.222 3.207 0.413 0.324 1.902 0.124 0.250 5.990 0.803 1.323 0.096 0.040 0.053 0.971 0.447 0.049 1.202 0.199 0.094 0.048 0.126 0.144 1.350 0.262 0.469 2.719 0.436 0.097 0.703 1.836 0.095 0.442 0.254 0.017 0.041 463 chr15 76601501 76613207 + 0 NA Intergenic Intergenic -3544 NM_001127716 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein alpha subunit protein-coding 1.070 0.663 3.346 0.178 0.666 2.789 1.802 1.477 2.567 1.703 2.221 0.301 0.503 1.218 3.295 1.544 0.521 2.565 0.727 0.415 0.954 0.753 0.539 4.695 0.937 0.423 0.299 0.618 0.513 4.015 0.855 3.038 4.804 0.826 1.412 1.835 6.000 0.953 0.737 0.557 0.157 0.135 1163 chr6 130063663 130074519 + 0 NA Intergenic Intergenic -37721 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.405 0.848 0.771 1.301 0.208 1.185 0.319 9.725 7.278 2.227 1.078 1.074 1.572 0.203 1.971 0.422 3.927 0.014 0.013 1.811 1.065 0.034 0.194 0.560 0.144 0.165 1.001 0.728 0.142 0.655 0.152 0.232 0.446 0.878 0.212 0.038 0.140 1.130 1.551 0.101 0.019 703 chr19 18106092 18115881 + 0 NA promoter-TSS (NM_001025604) promoter-TSS (NM_001025604) -955 NM_001025604 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 0.929 2.204 0.203 0.599 0.888 4.827 2.073 0.789 nan 1.240 0.587 0.343 0.676 1.048 1.996 1.736 0.441 1.075 0.429 0.375 2.417 3.072 1.940 5.405 1.909 1.398 0.794 1.268 0.900 7.194 3.163 2.329 2.453 1.470 2.428 1.836 1.590 4.363 1.674 0.539 0.371 0.305 1008 chr4 83292856 83302405 + 0 NA Intergenic AluJb|SINE|Alu -2481 NM_001003810 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 3.328 2.807 1.412 0.891 2.898 2.268 3.745 1.458 5.074 3.019 2.426 1.837 1.101 2.029 1.740 2.936 1.110 1.372 0.740 1.397 1.343 1.710 1.910 2.764 5.216 2.090 1.071 1.140 4.847 1.571 1.961 1.772 1.610 4.560 2.078 1.131 1.135 2.467 1.249 1.248 1.072 0.660 794 chr2 113992038 114000683 + 0 NA intron (NR_047570, intron 2 of 2) MIRb|SINE|MIR 2514 NR_015377 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 6.002 3.513 1.490 1.728 3.372 5.024 1.723 0.660 0.223 1.506 2.730 1.892 3.368 3.734 4.211 0.836 3.157 0.035 0.561 3.235 2.733 0.572 2.066 16.308 4.748 1.923 2.711 11.021 2.055 2.002 1.498 1.484 1.517 2.715 0.878 0.135 4.148 3.828 6.605 6.786 6.117 136 chr1 221911825 221918488 + 0 NA intron (NM_007207, intron 1 of 3) intron (NM_007207, intron 1 of 3) 362 NR_111940 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 5.835 2.699 0.867 0.787 2.801 0.907 4.228 3.864 4.389 2.582 3.727 1.114 0.779 2.511 2.003 1.632 1.418 1.996 1.270 0.041 2.536 2.518 0.926 0.906 1.148 1.857 1.188 1.674 2.710 2.175 1.722 2.192 1.869 4.739 0.943 1.264 1.209 2.062 2.301 0.878 0.527 0.314 130 chr1 200320741 200365197 + 0 NA promoter-TSS (NR_040064) promoter-TSS (NR_040064) -49 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 0.159 0.692 0.008 0.124 0.265 2.091 0.232 0.342 1.649 0.400 1.444 0.398 0.125 0.441 0.726 0.743 0.331 1.670 0.032 0.024 1.379 0.567 0.086 1.608 0.925 0.382 0.242 0.214 0.742 1.476 0.151 0.599 1.589 0.111 0.262 0.358 0.367 0.256 0.442 0.372 0.052 0.051 195 chr11 701564 711856 + 0 NA intron (NM_022772, intron 1 of 20) intron (NM_022772, intron 1 of 20) 590 NM_022772 64787 Hs.55016 NM_022772 ENSG00000177106 EPS8L2 EPS8R2 EPS8 like 2 protein-coding 6.230 2.572 3.766 1.489 5.089 0.398 4.017 2.133 10.974 7.133 5.517 1.749 1.238 2.712 3.268 5.505 1.089 0.137 2.057 0.148 1.411 1.772 2.398 0.916 10.122 2.147 1.037 2.750 1.199 5.704 1.688 0.821 1.843 4.533 4.742 2.285 3.752 2.449 0.819 0.954 2.373 1.378 465 chr15 80210125 80218114 + 0 NA promoter-TSS (NR_028330) promoter-TSS (NR_028330) -994 NR_028330 283687 Hs.722219 NM_175898 ST20-AS1 C15orf37 ST20 antisense RNA 1 ncRNA 1.699 1.665 1.080 1.682 4.897 1.953 1.576 0.724 2.919 2.255 1.346 2.826 0.489 1.188 1.363 1.504 0.647 0.832 0.875 0.935 0.667 0.898 1.233 1.018 1.730 1.282 0.624 0.652 1.052 2.660 1.816 1.155 1.339 5.255 1.169 0.950 0.859 1.873 1.423 0.987 0.441 0.265 823 chr2 234381841 234405119 + 0 NA intron (NM_018218, intron 29 of 30) L1M5|LINE|L1 80756 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 0.767 0.795 0.637 0.400 0.887 0.950 1.846 1.029 1.871 1.380 5.682 0.350 0.745 2.179 1.437 1.884 0.029 3.236 0.164 0.012 4.365 4.832 0.174 1.070 1.453 0.215 0.117 0.692 0.198 2.225 0.094 0.129 1.666 0.315 0.314 0.116 0.960 0.373 1.002 1.514 1.185 0.565 516 chr16 52578090 52614581 + 0 NA intron (NR_033920, intron 3 of 3) L2a|LINE|L2 -14621 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 0.667 0.094 0.010 0.005 0.020 0.027 0.259 0.009 2.222 0.420 0.746 0.413 0.013 1.217 0.057 0.049 0.008 0.031 3.345 0.008 0.044 0.022 0.004 0.081 0.077 0.030 0.030 1.382 0.115 1.276 0.033 1.976 3.716 0.039 0.043 0.389 0.269 0.037 0.121 0.008 0.011 0.008 334 chr12 58143405 58151152 + 0 NA Intergenic Intergenic -1048 NM_000075 1019 Hs.95577 NM_000075 ENSG00000135446 CDK4 CMM3|PSK-J3 cyclin dependent kinase 4 protein-coding 2.833 2.012 0.392 0.586 1.561 0.671 1.797 0.815 3.850 2.417 2.421 0.908 0.578 0.921 1.489 1.182 0.369 3.341 1.864 2.056 1.251 1.120 1.292 1.642 1.584 2.076 1.226 6.672 3.276 2.722 3.076 2.637 1.233 2.039 13.587 0.978 0.656 2.535 1.040 0.679 1.383 0.891 1154 chr6 106529696 106596929 + 0 NA Intergenic Intergenic 16575 NM_182907 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 0.263 0.237 0.238 0.582 1.026 0.145 0.344 0.595 3.084 0.864 0.718 0.503 0.194 1.265 0.845 0.898 0.192 1.081 0.045 0.010 0.629 0.319 0.044 0.390 0.126 0.279 0.160 0.615 1.797 0.426 0.362 0.049 0.454 0.904 0.051 0.483 0.615 0.161 0.170 0.113 0.800 0.724 744 chr19 49519961 49534967 + 0 NA 5' UTR (NM_000737, exon 1 of 3) 5' UTR (NM_000737, exon 1 of 3) 168 NM_000737 1082 Hs.446683 NM_000737 ENSG00000104827 CGB3 CGB|CGB5|CGB7|CGB8|hCGB chorionic gonadotropin beta subunit 3 protein-coding 5.580 0.795 0.095 0.519 0.793 0.641 0.386 0.390 nan 0.851 0.395 1.184 0.355 0.232 0.199 1.400 0.184 1.184 0.167 0.046 0.133 0.143 0.152 0.090 0.380 0.202 0.135 0.285 0.410 0.374 0.885 0.615 0.208 0.762 0.316 0.351 0.391 1.838 0.616 0.353 0.242 0.157 535 chr16 75296868 75307552 + 0 NA promoter-TSS (NM_001170715) promoter-TSS (NM_001170715) -259 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.138 3.245 0.463 1.095 2.789 4.635 1.370 0.543 1.931 1.285 1.291 1.201 1.100 0.937 1.294 1.727 1.582 1.777 1.832 0.558 1.799 1.849 1.616 0.915 2.984 3.145 1.619 1.137 1.703 2.891 4.269 1.628 1.630 2.365 3.344 0.545 1.167 3.220 1.149 1.047 1.972 1.133 863 chr20 48802421 48817674 + 0 NA TTS (NM_001285879) TTS (NM_001285879) -1441 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA 3.984 3.287 0.510 0.355 1.675 2.641 1.594 0.545 4.359 3.226 3.516 0.661 0.814 0.664 6.887 0.988 1.659 1.251 0.673 3.273 0.802 1.020 0.959 5.145 4.987 1.594 0.895 0.722 3.498 4.275 2.129 1.960 3.015 1.797 1.295 1.095 1.836 7.751 1.088 1.863 1.325 0.940 102 chr1 155209661 155215849 + 0 NA intron (NM_001005741, intron 1 of 11) MIRb|SINE|MIR -1686 NM_000157 2629 Hs.282997 NM_000157 ENSG00000177628 GBA GBA1|GCB|GLUC glucosylceramidase beta protein-coding 1.903 2.857 0.601 1.599 3.093 3.508 2.657 1.564 3.732 0.859 1.682 1.501 2.644 1.892 2.123 2.587 0.528 2.002 1.848 2.990 2.453 2.062 1.254 3.886 2.530 2.311 1.098 1.154 2.244 2.387 3.642 8.726 1.650 2.588 4.058 1.045 1.517 7.062 2.746 1.432 1.889 1.227 154 chr10 3892197 3904681 + 0 NA Intergenic AluJr|SINE|Alu 22297 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 0.995 0.537 0.269 0.719 0.851 1.532 1.131 1.186 0.569 0.187 0.829 0.519 0.694 1.515 0.446 1.263 0.076 1.430 0.113 0.023 1.037 0.666 0.235 0.705 0.446 0.622 0.406 0.313 0.829 0.553 0.665 2.782 0.604 1.553 2.042 0.411 0.646 3.658 1.727 0.535 2.883 3.150 530 chr16 69425267 69460826 + 0 NA Intergenic Intergenic -15452 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 0.433 0.721 0.046 0.194 0.595 5.299 0.388 0.163 0.389 0.168 0.470 0.206 0.179 0.153 1.466 0.315 0.255 1.660 0.735 0.242 0.517 0.301 0.379 0.898 0.574 0.424 0.286 0.232 0.366 4.964 0.606 3.293 1.276 0.542 0.572 0.716 0.181 0.755 0.463 0.218 1.653 2.598 804 chr2 174825245 174839596 + 0 NA Intergenic AluSz|SINE|Alu -1990 NM_001172712 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 2.841 3.189 3.051 1.232 3.798 3.523 6.240 1.897 8.598 5.192 5.279 1.684 1.420 3.368 5.034 2.767 1.337 1.017 1.330 2.730 2.957 3.979 1.783 2.556 4.742 2.959 1.044 4.536 2.160 3.909 2.374 1.208 2.711 4.214 2.747 0.988 1.652 4.530 1.875 2.131 2.114 1.983 214 chr11 57524452 57568875 + 0 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 17429 NM_001085461 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 2.241 0.496 4.037 0.755 1.821 1.014 1.310 1.266 3.471 1.973 4.492 1.287 0.490 1.106 2.897 2.556 1.815 2.056 0.298 0.091 1.195 0.790 0.327 0.706 0.874 0.596 0.396 1.691 0.758 1.639 0.535 0.627 1.431 1.882 0.915 1.133 2.065 0.215 0.789 1.004 0.198 0.226 606 chr17 41139686 41152927 + 0 NA TTS (NM_001321381) TTS (NM_001321381) -4140 NM_000988 6155 Hs.514196 NM_000988 ENSG00000131469 RPL27 L27 ribosomal protein L27 protein-coding 1.438 1.489 0.174 0.925 2.194 0.909 1.552 1.065 nan 0.772 1.401 1.349 1.123 1.710 1.778 3.003 0.585 0.484 0.386 0.460 1.634 1.554 0.599 1.850 2.587 1.284 0.585 1.782 0.777 1.523 0.756 1.425 2.105 1.847 3.519 1.041 1.180 1.658 1.908 0.948 0.605 0.489 1127 chr6 34752494 34761073 + 0 NA Intergenic AluSx|SINE|Alu -3011 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 1.440 1.585 0.389 0.898 2.540 0.811 1.068 0.810 4.179 2.930 1.851 0.659 0.393 0.671 1.401 2.997 0.212 1.486 0.735 1.176 1.087 1.078 0.647 0.766 1.224 1.181 0.634 1.081 2.158 1.428 2.897 2.542 1.265 4.399 1.569 0.749 1.162 1.744 1.167 0.229 0.481 0.214 965 chr3 141654599 141661463 + 0 NA Intergenic AluSz|SINE|Alu 61198 NM_001178140 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 0.346 0.346 0.425 0.693 1.063 0.690 2.359 1.782 0.774 0.323 2.124 0.447 0.809 1.174 1.314 2.269 0.727 1.050 0.059 0.060 0.996 0.673 0.277 2.175 1.748 0.441 0.295 1.370 0.438 0.179 0.425 1.045 0.302 1.493 6.362 0.260 0.269 6.554 1.830 0.909 1.317 1.121 221 chr11 63294386 63305958 + 0 NA Intergenic MER68-int|LTR|ERVL -4101 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 RARRES3 HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3 retinoic acid receptor responder 3 protein-coding 3.597 0.507 4.526 0.573 1.519 0.070 2.171 3.549 1.991 1.019 4.980 1.843 0.700 3.591 1.241 3.143 0.322 2.028 0.078 0.063 3.602 2.996 0.121 0.153 0.113 0.120 0.088 6.810 0.759 3.610 0.099 0.333 1.790 3.887 0.163 0.318 1.628 0.105 0.860 0.923 0.052 0.022 931 chr3 11176577 11198206 + 0 NA intron (NM_001098213, intron 1 of 1) L1ME3|LINE|L1 8612 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 0.293 0.535 0.014 0.593 1.361 0.215 1.754 1.643 2.210 0.627 0.296 1.002 0.408 1.568 0.694 2.489 0.168 0.659 0.028 0.006 0.992 0.710 0.062 0.054 0.862 1.208 0.571 1.818 1.300 0.839 1.338 0.015 0.492 1.051 3.982 0.374 0.127 1.304 1.112 0.845 0.881 0.684 1132 chr6 40979738 40997259 + 0 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 2521 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 0.057 0.292 0.039 0.259 0.286 0.371 0.262 0.199 0.801 0.270 2.032 0.399 0.377 0.206 0.126 1.104 0.016 0.226 0.446 0.032 0.893 0.451 0.033 0.581 0.165 0.065 0.053 0.118 0.268 0.534 0.106 2.084 0.242 0.611 2.364 0.049 0.127 0.463 0.786 0.408 0.108 0.035 164 chr10 35414600 35420618 + 0 NA intron (NM_183060, intron 1 of 5) AluY|SINE|Alu 1224 NM_181571 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 2.385 4.193 0.608 0.597 2.516 7.493 1.905 0.815 2.489 1.833 2.127 0.483 0.824 1.231 1.608 2.345 0.759 2.787 0.335 6.154 1.071 1.298 2.586 2.851 1.733 4.138 1.646 1.338 1.927 4.329 3.078 2.438 2.876 4.261 10.158 1.299 1.580 4.814 1.893 1.454 2.306 1.536 873 chr20 55202874 55207671 + 0 NA intron (NM_003222, intron 1 of 6) CpG-16801 914 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 1.606 0.065 2.007 0.039 0.775 9.041 4.273 0.944 7.887 4.299 8.244 1.576 1.118 2.097 5.395 1.321 3.966 0.057 0.022 0.116 1.240 1.160 2.271 1.214 3.347 1.280 0.718 1.347 0.313 6.237 0.132 9.147 6.087 1.475 1.964 0.944 7.857 13.574 2.075 1.118 0.768 0.731 54 chr1 87791919 87803010 + 0 NA intron (NM_006769, intron 1 of 4) CpG 3313 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 5.448 2.458 4.518 1.092 3.025 0.114 2.172 0.686 5.686 3.252 1.970 1.103 0.660 1.113 3.107 2.852 1.456 1.935 1.094 1.936 1.811 1.545 1.054 1.259 2.768 1.828 1.095 2.183 3.577 1.767 3.374 1.278 2.322 3.962 1.995 1.041 0.766 3.047 1.292 1.386 1.096 0.718 64 chr1 145523402 145563259 + 0 NA 3' UTR (NM_001303040, exon 27 of 27) 3' UTR (NM_001303040, exon 27 of 27) -5879 NM_001280799 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 0.352 0.432 0.375 0.333 0.512 0.579 0.145 0.363 7.567 1.592 1.759 0.756 1.239 0.367 0.662 1.402 0.082 1.079 0.392 0.100 0.594 0.325 0.154 0.414 0.560 0.453 0.223 0.436 1.583 0.706 0.850 0.480 2.493 0.551 1.273 0.857 0.494 0.600 0.591 0.560 0.549 0.493 1208 chr7 99677640 99689026 + 0 NA Intergenic Intergenic -3162 NM_001278287 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 1.421 2.384 0.234 0.882 1.707 1.354 3.307 1.223 3.322 2.017 3.476 1.153 1.353 1.601 1.915 2.839 0.517 2.196 1.855 1.048 0.652 0.522 1.160 2.355 5.916 5.105 2.033 1.243 2.840 1.619 5.081 1.553 1.393 2.262 2.023 1.396 1.564 2.970 1.466 0.840 4.440 3.351 1277 chr8 128742561 128780841 + 0 NA Intergenic AluJo|SINE|Alu 13386 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc v-myc avian myelocytomatosis viral oncogene homolog protein-coding 2.411 2.550 0.064 0.540 1.514 1.416 1.868 0.752 2.819 1.750 1.382 1.097 1.283 1.371 3.573 2.390 1.190 40.517 0.641 1.200 2.097 1.967 0.786 16.898 2.913 2.562 1.152 2.010 3.238 2.866 2.236 8.696 5.620 1.671 6.119 2.907 1.264 3.130 10.292 1.193 0.969 0.803 1048 chr5 44930318 44972834 + 0 NA Intergenic Intergenic 142549 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 0.112 0.135 0.012 0.067 0.242 0.046 0.093 0.067 0.235 0.142 0.126 0.182 0.175 0.044 0.105 0.165 0.029 0.222 0.055 7.378 0.096 0.044 0.005 0.068 0.056 0.021 0.029 0.047 0.412 0.050 0.127 0.026 0.061 0.148 0.028 0.037 0.031 0.115 0.069 0.054 0.027 0.036 366 chr12 125088223 125126215 + 0 NA Intergenic Intergenic -55209 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.347 0.278 0.274 0.751 1.014 0.070 0.164 0.417 3.812 0.779 0.363 0.935 0.099 0.313 1.844 2.212 0.412 0.608 0.093 0.058 0.583 0.286 0.338 0.782 0.172 0.116 0.127 0.353 0.618 2.184 0.298 0.136 1.039 1.273 0.105 2.179 0.940 0.445 0.187 0.123 0.088 0.073 302 chr12 19839784 19846218 + 0 NA Intergenic MER50|LTR|ERV1 249486 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 0.397 0.133 0.114 0.253 0.067 0.126 0.049 0.191 0.102 0.077 0.023 0.074 0.153 0.015 0.318 0.014 0.187 0.030 0.021 0.033 0.011 0.011 0.094 0.057 0.015 0.012 0.232 0.076 0.044 4.011 1.279 0.201 0.043 3.317 0.116 0.035 0.073 0.011 0.045 0.016 971 chr3 170071831 170083324 + 0 NA 5' UTR (NM_005414, exon 2 of 7) 5' UTR (NM_005414, exon 2 of 7) 166 NM_001145097 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 6.959 1.829 4.478 0.592 1.916 4.435 2.825 1.106 3.169 2.303 6.275 0.674 0.546 0.841 3.292 2.345 1.258 1.846 1.104 2.110 1.665 1.731 1.872 1.231 3.484 3.898 1.490 0.868 2.617 4.941 3.645 2.079 2.750 2.664 1.630 0.862 3.574 1.476 0.789 1.097 1.153 0.846 1329 chr9 139791580 139800441 + 0 NA intron (NM_021138, intron 4 of 10) L1MB3|LINE|L1 14825 NR_039697 100616480 NR_039697 ENSG00000266507 MIR4479 - microRNA 4479 ncRNA 2.709 4.589 0.721 3.518 6.559 1.028 6.883 1.692 0.764 0.364 1.016 2.483 1.376 1.702 1.336 2.581 0.228 0.647 2.245 0.031 3.570 4.460 1.392 3.716 11.760 2.713 1.103 3.245 4.898 5.654 1.818 3.328 3.806 6.824 0.564 0.624 7.681 2.822 0.933 1.310 2.554 2.594 1333 chrX 12963597 12982280 + 0 NA Intergenic Intergenic -11519 NR_030727 349408 Hs.685035 NR_030727 ENSG00000233338 TLR8-AS1 GS1-324M7.6 TLR8 antisense RNA 1 ncRNA 1.003 0.857 0.339 0.765 1.471 0.333 1.140 0.797 1.610 0.705 1.487 0.966 0.549 0.844 1.286 1.082 0.456 4.109 0.129 0.022 1.369 1.132 0.227 1.047 0.962 0.999 0.514 1.148 1.722 0.998 1.107 0.310 1.137 2.143 0.422 0.655 0.620 0.499 1.276 0.827 0.207 0.108 268 chr11 120195480 120209058 + 0 NA 3' UTR (NM_001198670, exon 3 of 3) 3' UTR (NM_001198670, exon 3 of 3) -5349 NM_001198665 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 0.937 2.666 0.627 0.500 1.478 4.028 1.759 0.981 2.692 1.899 1.072 0.580 1.274 2.208 2.355 1.872 0.450 2.452 0.681 0.663 1.744 1.250 1.959 1.245 5.366 3.566 1.629 1.031 2.662 1.488 2.742 1.294 2.808 1.625 6.601 1.344 1.954 2.475 2.257 1.447 1.944 1.389 1030 chr5 392836 403526 + 0 NA intron (NM_020731, intron 4 of 11) intron (NM_020731, intron 4 of 11) 45094 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 0.262 1.637 0.006 1.063 1.668 0.093 0.119 0.098 3.905 0.386 0.258 0.567 0.309 0.133 0.117 4.828 0.062 1.752 6.022 0.221 1.491 0.865 0.140 1.095 1.015 1.306 0.600 0.525 0.334 0.584 0.283 0.082 1.152 1.907 0.066 0.103 0.282 0.148 0.631 0.214 4.301 3.973 664 chr17 80792946 80852215 + 0 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -24649 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 0.475 0.508 0.353 0.789 1.950 0.023 0.889 0.715 nan 2.984 2.800 1.117 0.351 0.512 1.264 1.670 0.486 0.229 0.057 0.047 0.420 0.270 0.130 0.164 0.173 0.088 0.058 0.622 0.264 0.246 0.203 0.068 1.784 3.419 0.064 1.112 2.273 0.162 0.187 0.221 0.100 0.062 737 chr19 47351688 47383570 + 0 NA Intergenic Intergenic -13377 NM_004069 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 sigma 1 subunit protein-coding 1.783 2.409 0.360 0.268 1.008 2.137 1.058 0.406 nan 0.747 3.210 0.541 0.868 0.375 1.926 1.378 1.612 2.263 0.558 0.461 0.780 0.676 1.601 1.765 1.893 1.040 0.505 0.473 0.944 2.149 1.182 1.749 1.060 1.092 2.222 0.635 1.415 1.281 1.194 1.119 0.904 0.744 594 chr17 38293963 38298373 + 0 NA promoter-TSS (NM_007359) promoter-TSS (NM_007359) -339 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 cancer susceptibility candidate 3 protein-coding 17.701 4.085 7.027 1.029 3.343 3.729 2.201 0.839 2.911 1.705 2.201 1.063 1.831 1.800 1.775 2.422 0.805 1.122 0.998 1.769 2.116 1.996 1.921 3.699 3.527 2.081 0.917 0.838 2.422 4.366 2.719 2.487 1.650 4.557 2.249 1.582 2.235 3.834 1.987 1.646 1.972 1.701 1016 chr4 129553380 129560073 + 0 NA Intergenic Intergenic -174052 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 0.200 0.535 0.005 0.196 0.019 0.132 0.144 0.338 0.072 0.170 0.088 0.052 0.112 0.060 0.201 0.028 0.629 0.495 0.320 0.086 3.997 0.042 0.100 0.105 0.069 0.211 2.413 0.053 5.748 1.363 0.053 0.097 0.291 0.112 0.023 0.153 0.103 0.026 0.016 186 chr10 126770313 126775776 + 0 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -51605 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 0.535 1.820 0.011 0.662 2.553 0.484 1.027 0.718 5.844 2.610 0.921 0.989 0.929 1.502 0.106 3.621 0.806 1.570 0.037 0.051 1.835 1.434 0.175 2.083 0.876 0.584 0.343 0.989 1.034 2.106 2.041 1.813 0.760 7.050 3.115 1.246 0.137 0.721 1.580 0.487 0.242 0.208 883 chr21 16236173 16261677 + 0 NA Intergenic Intergenic 188201 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 0.456 0.075 0.081 1.596 2.750 1.582 1.235 1.489 3.016 1.530 1.421 1.428 0.399 1.944 1.274 2.064 0.379 0.059 0.033 0.282 0.102 0.120 0.075 2.398 0.430 0.316 1.723 0.202 0.723 0.194 0.287 1.682 0.363 0.104 0.532 1.660 0.063 0.484 0.165 0.023 0.032 194 chr11 693036 699600 + 0 NA promoter-TSS (NM_021008) promoter-TSS (NM_021008) -564 NM_021008 10522 Hs.243994 NM_021008 ENSG00000177030 DEAF1 MRD24|NUDR|SPN|ZMYND5 DEAF1, transcription factor protein-coding 4.168 4.832 2.487 1.443 4.970 1.930 3.640 2.352 9.121 5.004 4.001 1.295 1.421 1.670 2.795 6.167 0.840 1.243 4.028 2.509 2.374 3.033 3.248 4.117 5.722 5.950 2.253 1.879 3.538 3.843 2.986 2.130 2.027 6.330 6.574 1.938 2.378 4.203 2.684 3.024 2.044 1.166 442 chr15 32903152 32910657 + 0 NA promoter-TSS (NM_014783) promoter-TSS (NM_014783) 43 NR_135833 101928042 NR_135833 LOC101928042 - uncharacterized LOC101928042 ncRNA 1.711 2.589 1.032 1.111 2.473 4.613 2.495 0.886 6.855 3.929 1.833 2.046 1.538 2.175 2.130 4.141 1.734 3.401 1.855 1.699 2.727 2.864 0.943 5.124 2.420 3.587 1.375 1.345 4.842 3.796 3.649 3.225 3.087 2.220 6.734 1.895 1.282 2.355 2.738 5.803 2.643 1.959 1239 chr8 48642852 48652623 + 0 NA intron (NR_104581, intron 16 of 16) intron (NR_104581, intron 16 of 16) 2989 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 1.366 5.184 1.855 0.943 3.404 3.633 5.322 1.055 5.997 4.563 3.416 1.169 0.929 3.144 1.146 1.574 1.370 1.402 0.833 0.470 3.237 4.766 2.060 1.700 2.885 4.590 1.826 1.632 1.677 5.129 4.509 4.021 2.498 2.672 3.341 1.828 1.042 3.934 2.296 0.934 0.690 0.642 688 chr19 4122508 4147853 + 0 NA Intergenic AluSg|SINE|Alu -11054 NM_030662 5605 Hs.465627 NM_030662 ENSG00000126934 MAP2K2 CFC4|MAPKK2|MEK2|MKK2|PRKMK2 mitogen-activated protein kinase kinase 2 protein-coding 0.872 1.027 0.747 0.613 1.084 0.569 1.505 0.839 1.058 0.432 0.443 0.305 0.415 0.552 1.073 1.902 0.324 1.097 0.164 0.251 2.575 2.505 0.968 2.710 2.905 1.792 0.860 0.523 0.965 2.308 1.179 0.882 0.706 0.979 2.250 0.491 0.434 1.702 2.940 0.472 1.483 1.688 1023 chr4 185568669 185572407 + 0 NA promoter-TSS (NM_001345901) promoter-TSS (NM_001345901) 91 NM_004346 836 Hs.141125 NM_004346 ENSG00000164305 CASP3 CPP32|CPP32B|SCA-1 caspase 3 protein-coding 4.345 4.293 0.911 0.462 3.040 2.949 3.934 2.038 6.472 4.116 3.830 2.010 1.403 1.897 2.832 3.247 1.396 1.826 0.911 1.887 2.773 2.404 1.581 3.267 2.325 9.061 3.787 1.421 7.555 2.896 4.298 1.811 2.069 4.270 3.079 1.338 2.098 2.885 2.270 1.978 1.616 1.362 1207 chr7 99004681 99008174 + 0 NA promoter-TSS (NM_003910) promoter-TSS (NM_003910) -122 NM_014891 11333 Hs.632296 NM_014891 ENSG00000106244 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding 4.088 5.997 1.683 1.302 4.839 4.302 10.149 1.172 9.124 7.111 10.900 3.139 2.728 3.575 5.029 5.600 2.342 4.452 2.988 4.871 2.329 2.362 4.327 6.168 8.975 5.771 2.724 3.754 6.911 5.420 9.969 3.264 4.212 7.136 5.249 5.918 4.673 8.401 5.315 3.279 6.132 5.058 733 chr19 46219222 46235267 + 0 NA promoter-TSS (NM_001329634) promoter-TSS (NM_001329634) -490 NM_001329634 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 1.769 2.714 0.355 1.342 3.439 1.480 0.850 0.533 nan 1.249 1.320 1.037 0.508 0.882 2.506 2.828 0.885 1.824 0.466 0.579 0.724 0.674 1.092 1.006 5.363 1.132 0.607 0.469 0.693 3.269 4.846 1.099 1.196 3.972 1.166 0.676 1.086 1.458 1.352 0.597 0.370 0.274 685 chr19 3171083 3178948 + 0 NA Intergenic Intergenic -3721 NM_003775 8698 Hs.662006 NM_003775 ENSG00000125910 S1PR4 EDG6|LPC1|S1P4|SLP4 sphingosine-1-phosphate receptor 4 protein-coding 1.377 1.014 3.331 1.616 2.971 0.288 3.449 1.692 4.844 1.517 1.802 1.293 1.008 3.877 0.820 2.994 0.486 0.457 0.037 4.486 6.600 0.310 0.592 1.066 0.409 0.286 2.429 0.596 1.428 0.818 0.362 2.336 5.972 2.098 2.526 1.008 0.367 3.381 1.894 0.044 0.046 752 chr19 57032509 57073059 + 0 NA intron (NM_020828, intron 2 of 7) L2|LINE|L2 2467 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 0.060 0.188 0.061 0.111 0.261 0.022 0.216 0.037 0.084 0.071 0.228 0.155 0.070 0.062 0.240 0.102 0.087 0.116 0.018 0.065 0.079 0.059 0.020 0.082 0.288 0.092 0.052 0.094 0.145 0.205 0.215 0.060 0.021 0.353 0.139 0.012 0.014 0.129 0.180 0.107 4.541 3.606 167 chr10 50757871 50762077 + 0 NA Intergenic Intergenic -12390 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 0.488 0.223 4.794 0.403 0.980 6.452 0.960 1.814 0.210 0.116 1.388 0.525 0.196 0.648 6.437 2.107 1.810 0.045 0.023 0.033 0.630 0.208 1.369 0.956 23.889 9.408 3.446 0.475 0.285 0.101 0.235 0.110 0.457 1.315 0.874 0.260 0.646 6.137 5.530 0.763 0.027 0.033 1240 chr8 53242008 53258719 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 72076 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 0.056 0.052 0.015 0.341 0.580 0.060 0.607 0.025 3.129 0.683 0.461 0.884 0.340 0.490 0.081 0.302 0.012 0.066 3.055 0.257 0.046 0.032 0.009 0.627 0.077 0.058 0.014 0.436 0.078 0.541 0.064 1.218 0.354 0.474 3.549 0.360 0.075 0.028 0.170 0.019 0.012 0.003 443 chr15 34330029 34350058 + 0 NA intron (NM_012125, intron 2 of 2) AluSz|SINE|Alu -8740 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 0.294 0.691 0.136 0.294 0.694 0.599 0.481 0.132 0.983 0.894 0.286 0.178 0.179 0.171 0.352 0.613 0.197 2.601 0.320 0.291 0.235 0.281 0.443 0.515 0.377 0.629 0.281 0.206 3.598 1.214 1.128 0.500 0.597 0.810 0.866 0.296 0.396 0.888 0.767 1.069 0.483 0.264 802 chr2 172958747 172972082 + 0 NA exon (NM_004405, exon 3 of 3) exon (NM_004405, exon 3 of 3) 2064 NM_004405 1746 Hs.419 NM_004405 ENSG00000115844 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 0.411 2.570 0.652 0.740 0.635 1.665 0.769 0.301 1.110 1.270 0.648 0.639 1.347 0.375 2.360 1.582 2.083 2.568 0.293 3.821 1.030 0.646 1.422 2.773 9.179 2.097 1.212 0.269 2.892 1.823 5.112 0.704 0.806 0.764 1.323 0.166 0.507 7.154 0.846 1.005 1.779 1.057 615 chr17 43440784 43463648 + 0 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 50796 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 2.822 2.099 2.962 0.673 1.067 4.626 0.940 0.814 nan 0.534 0.869 0.652 1.293 1.009 1.431 2.958 0.993 2.675 0.017 2.293 2.305 1.911 2.590 3.018 6.489 2.457 1.055 0.802 4.276 5.273 3.270 0.735 0.833 1.671 2.117 0.699 1.824 7.717 1.685 0.878 2.103 1.764 204 chr11 13228088 13247020 + 0 NA Intergenic MIRb|SINE|MIR -61720 NM_001030272 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 1.169 1.449 0.067 1.864 1.969 0.110 2.133 2.720 2.187 0.930 1.549 1.320 2.019 1.817 0.627 5.554 0.233 2.590 0.047 0.022 3.246 2.977 0.241 1.644 4.152 0.987 0.494 1.283 2.834 0.251 0.899 0.220 0.405 2.735 5.071 0.284 0.205 0.266 2.319 2.033 1.475 1.638 1067 chr5 126110644 126116265 + 0 NA exon (NM_005573, exon 1 of 11) exon (NM_005573, exon 1 of 11) 609 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 5.907 5.426 2.628 1.755 4.747 5.750 4.851 1.766 8.554 3.805 3.622 2.414 1.771 4.312 3.282 5.124 2.086 2.547 1.487 2.631 4.221 5.283 2.748 6.884 7.339 6.844 2.877 2.238 5.532 6.031 5.612 4.460 3.530 6.149 6.947 2.532 1.375 6.859 3.865 4.553 5.947 3.949 1019 chr4 148671108 148717189 + 0 NA intron (NM_024605, intron 1 of 22) intron (NM_024605, intron 1 of 22) -9598 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 0.175 0.178 0.084 0.893 1.692 0.072 0.564 0.571 3.093 1.320 0.498 0.739 0.121 0.539 0.463 1.652 0.506 0.789 0.022 0.024 0.242 0.077 0.109 0.080 0.318 0.211 0.127 0.759 0.136 0.230 0.144 0.085 0.454 0.544 0.204 0.170 0.936 0.068 0.315 0.043 0.016 0.014 1098 chr6 1756109 1773054 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 153900 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.672 0.134 0.043 0.246 0.680 0.029 0.252 0.142 7.076 3.394 3.122 1.230 0.060 0.186 0.486 0.517 0.198 0.203 0.480 0.013 0.135 0.043 0.026 0.075 0.143 0.032 0.023 0.208 0.143 0.106 0.120 0.214 0.245 0.716 0.082 0.174 0.337 0.138 0.112 0.117 0.017 0.003 885 chr21 16642824 16652836 + 0 NA Intergenic Intergenic -210704 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 0.476 0.093 7.533 0.147 0.832 0.069 0.108 0.470 0.851 0.250 1.563 1.081 0.012 0.500 0.513 0.128 0.890 0.040 0.014 0.014 0.021 0.029 0.059 0.037 0.060 0.024 0.242 0.178 0.155 0.043 0.063 0.670 0.420 0.044 0.086 0.842 0.029 0.071 0.008 0.017 20 chr1 23303208 23339204 + 0 NA Intergenic AluSx3|SINE|Alu 21137 NM_001242521 729059 Hs.236896 NM_001242521 ENSG00000227868 C1orf234 - chromosome 1 open reading frame 234 protein-coding 0.160 0.088 0.038 0.167 0.256 0.026 0.072 0.103 0.388 0.114 0.085 0.165 0.021 0.030 3.338 0.285 0.024 0.188 0.030 0.038 0.063 0.038 0.061 0.073 0.233 0.099 0.063 0.156 0.210 0.145 0.113 0.028 0.078 0.353 0.104 0.064 0.097 0.123 0.142 0.078 0.027 0.014 489 chr16 4394040 4429867 + 0 NA intron (NR_145128, intron 16 of 27) intron (NR_145128, intron 16 of 27) -9896 NM_138440 114990 Hs.372579 NM_138440 ENSG00000168140 VASN SLITL2 vasorin protein-coding 2.405 1.892 0.218 0.776 1.988 0.455 1.498 0.442 5.713 2.868 1.325 0.779 0.080 0.473 1.036 1.910 0.839 0.389 0.139 0.186 0.466 0.329 0.657 1.575 1.204 0.362 0.200 1.134 0.275 0.942 0.515 0.365 3.585 2.817 0.499 0.251 1.504 0.863 0.471 0.146 0.145 0.067 1143 chr6 45386836 45423105 + 0 NA intron (NM_001015051, intron 4 of 7) intron (NM_001015051, intron 4 of 7) 14656 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.387 2.253 0.140 0.338 0.893 1.274 0.382 0.498 2.488 1.303 1.244 1.044 0.871 0.318 0.937 1.759 0.325 2.256 0.022 1.108 1.007 0.448 0.069 0.363 0.358 0.462 0.293 0.316 3.800 0.121 1.675 1.189 0.719 0.482 0.799 0.362 0.120 1.215 1.210 2.617 5.917 6.500 846 chr20 30742093 30746669 + 0 NA intron (NM_014742, intron 13 of 17) MER2|DNA|TcMar-Tigger 33782 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein, Y-linked 26, pseudogene pseudo 0.534 0.616 0.256 0.494 0.269 0.284 0.275 nan 0.176 0.140 0.136 0.285 0.627 0.136 0.477 0.063 0.174 0.173 0.060 0.328 0.275 0.144 0.260 2.712 0.329 0.239 0.112 0.282 0.150 0.668 6.469 0.172 0.351 0.273 0.133 0.061 0.140 0.435 0.136 0.076 0.033 1167 chr6 138128217 138133771 + 0 NA Intergenic Intergenic -57331 NM_006290 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 0.591 1.330 2.263 2.855 1.113 3.804 3.118 2.529 0.568 0.546 1.018 1.279 6.886 1.091 2.800 0.139 1.196 0.090 0.025 3.196 2.962 0.172 7.951 4.524 2.883 1.580 4.878 1.620 0.463 1.020 0.625 1.109 0.923 0.235 0.728 0.420 1.020 0.768 1.527 0.052 0.019 581 chr17 35847098 35855771 + 0 NA intron (NM_007026, intron 1 of 2) intron (NM_007026, intron 1 of 2) 1483 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 9.496 3.053 1.928 1.136 4.305 5.081 3.129 2.507 1.991 1.557 2.370 1.665 2.003 3.312 2.373 3.086 1.819 1.211 0.285 0.736 1.907 1.903 1.757 4.755 5.024 2.012 0.989 2.146 2.456 3.232 1.645 1.748 1.072 11.080 3.495 1.113 3.933 3.369 2.355 1.485 3.889 2.162 520 chr16 57030520 57036395 + 0 NA intron (NM_001330552, intron 1 of 47) intron (NM_001330552, intron 1 of 47) 10060 NM_001330552 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 0.404 2.267 2.281 3.044 0.279 2.760 0.362 0.074 0.083 0.167 1.369 1.033 6.930 0.476 1.227 0.016 0.735 0.051 0.095 4.193 4.651 0.176 0.381 2.707 0.320 0.226 0.612 2.835 0.180 0.725 0.080 0.205 2.096 1.849 0.021 0.056 0.158 1.400 0.244 0.118 0.174 134 chr1 203480306 203484521 + 0 NA Intergenic Intergenic 19142 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 0.664 4.476 0.030 2.687 3.497 0.343 7.100 5.707 2.591 0.743 0.953 1.979 1.963 7.543 5.821 8.012 0.294 4.726 0.099 6.804 6.643 1.511 0.282 3.481 2.830 1.761 5.254 6.046 0.830 1.225 1.084 3.561 2.451 3.407 1.822 0.985 1.320 3.260 2.174 3.852 3.261 296 chr12 12027650 12040238 + 0 NA intron (NM_001987, intron 5 of 7) AluJr|SINE|Alu -189934 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 2.537 0.874 0.237 1.543 2.617 0.116 2.537 1.885 3.178 0.997 1.926 1.232 0.197 2.395 1.918 1.851 0.307 0.175 3.658 0.022 0.579 0.339 0.029 0.047 1.242 0.038 0.025 3.059 0.310 0.764 0.124 0.469 0.723 2.573 0.111 0.546 1.176 0.198 0.818 0.543 0.027 0.037 1199 chr7 37070065 37073754 + 0 NA intron (NM_001206482, intron 15 of 21) intron (NM_001206482, intron 15 of 21) 34508 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 4.482 1.871 0.386 1.326 1.575 2.334 5.969 3.423 4.586 1.379 5.641 3.007 3.648 3.143 1.560 4.716 1.246 3.891 1.436 0.152 5.408 4.482 0.438 1.737 5.049 0.807 0.574 6.784 9.191 2.824 2.396 1.739 1.356 3.114 9.765 1.015 1.648 2.671 2.844 2.213 2.886 2.948 619 chr17 45951933 45975303 + 0 NA Intergenic AluSc8|SINE|Alu 9564 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 1.134 1.118 1.197 0.381 1.003 0.454 0.794 0.398 nan 1.203 0.962 0.231 0.508 0.638 3.674 1.098 1.069 0.632 0.223 0.592 0.648 0.755 0.521 0.581 1.152 1.306 0.827 0.534 1.215 1.087 1.354 0.462 0.671 1.004 0.435 0.665 1.105 1.208 0.676 0.525 0.439 0.253 779 chr2 70171475 70177096 + 0 NA Intergenic Intergenic 15112 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 0.821 0.455 3.237 4.420 1.523 0.979 1.989 11.974 5.363 1.624 3.412 1.443 3.679 2.287 6.869 0.034 1.535 0.017 0.008 1.646 1.299 0.156 0.872 0.372 0.504 0.296 1.091 0.766 0.623 0.384 0.323 5.742 3.102 1.862 5.245 3.732 0.279 1.056 2.263 0.360 0.280 572 chr17 27223412 27230069 + 0 NA intron (NM_144683, intron 4 of 4) AluSx|SINE|Alu -1986 NM_001330170 2319 Hs.514038 NM_004475 ENSG00000132589 FLOT2 ECS-1|ECS1|ESA|ESA1|M17S1 flotillin 2 protein-coding 2.118 3.021 0.306 0.708 2.667 1.099 1.257 0.742 5.658 3.311 2.159 0.791 0.744 1.309 1.707 1.508 1.396 0.576 0.784 0.980 1.442 1.149 1.984 1.745 4.475 4.128 2.450 0.298 0.937 3.391 2.208 2.093 2.261 2.827 1.760 1.843 1.513 3.865 0.922 0.806 0.807 0.354 50 chr1 68173467 68205182 + 0 NA intron (NM_018841, intron 2 of 3) MIR|SINE|MIR 38464 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 0.496 0.744 0.032 1.045 1.305 0.149 0.718 0.666 3.697 0.774 0.257 0.728 0.916 1.158 0.328 1.583 0.153 1.196 1.551 0.031 0.773 0.419 0.192 0.149 0.226 0.118 0.086 0.558 0.503 0.703 0.775 1.497 0.624 1.037 0.373 0.471 0.288 0.164 0.366 0.366 0.118 0.065 1100 chr6 7040817 7068312 + 0 NA Intergenic AluJo|SINE|Alu -53266 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 0.680 0.771 0.070 0.892 1.695 0.090 1.306 0.884 6.847 2.642 2.384 1.090 0.413 1.643 1.322 2.057 0.434 0.438 0.328 0.045 1.994 1.781 0.066 0.458 0.308 0.173 0.187 0.711 0.822 0.471 0.448 0.523 2.374 2.136 2.305 1.400 0.597 0.296 0.647 0.564 0.057 0.052 278 chr11 129256152 129265150 + 0 NA intron (NM_003658, intron 1 of 3) intron (NM_003658, intron 1 of 3) 14770 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.933 0.122 4.157 0.022 0.140 0.049 0.023 0.061 0.407 0.079 0.229 0.115 0.066 0.256 0.151 1.529 0.064 0.035 0.046 0.016 0.113 0.043 0.153 0.013 0.026 0.131 0.155 0.054 0.204 0.035 0.201 0.071 0.113 0.068 0.476 0.117 0.123 0.042 0.013 0.017 338 chr12 58269232 58299605 + 0 NA Intergenic Intergenic -43671 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 0.603 0.410 0.047 0.580 0.871 0.242 2.669 0.871 7.265 3.971 2.977 1.352 0.814 1.783 0.417 1.339 0.097 3.307 1.025 1.135 2.365 2.009 0.282 0.200 0.235 0.232 0.177 0.343 0.923 0.863 2.585 0.702 0.764 0.810 3.286 0.472 0.177 0.991 1.203 0.635 0.150 0.140 1026 chr5 249105 256081 + 0 NA intron (NM_001294332, intron 12 of 13) intron (NM_001294332, intron 12 of 13) 19046 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 1.707 0.171 0.027 1.218 4.638 0.080 6.257 1.436 8.685 1.982 0.755 0.564 0.556 2.815 0.309 4.815 2.395 0.145 0.157 0.061 3.802 4.460 0.115 0.109 3.987 9.437 2.944 3.499 0.560 0.286 0.787 2.739 11.130 3.613 0.198 1.229 4.179 0.209 0.271 0.251 0.025 0.039 992 chr4 13545054 13551469 + 0 NA non-coding (NR_015450, exon 1 of 1) non-coding (NR_015450, exon 1 of 1) 1187 NR_015450 285548 Hs.529284 NR_015450 LINC01096 - long intergenic non-protein coding RNA 1096 ncRNA 0.505 0.627 0.481 0.451 1.484 0.019 0.085 0.213 0.672 0.513 0.103 0.460 1.014 0.152 0.245 0.574 0.044 0.073 0.123 0.172 0.294 0.125 0.597 0.145 0.546 0.328 0.184 0.030 2.518 0.820 7.234 2.011 0.156 1.339 0.808 0.328 0.194 0.953 0.062 0.084 0.350 0.142 323 chr12 54401305 54416251 + 0 NA Intergenic Intergenic -1858 NM_153693 3223 Hs.549040 NM_004503 ENSG00000197757 HOXC6 CP25|HHO.C8|HOX3|HOX3C homeobox C6 protein-coding 0.275 0.098 1.763 0.025 0.105 5.846 0.144 0.063 5.004 2.791 0.251 0.049 0.436 0.022 0.581 0.268 0.366 3.555 1.707 5.011 0.639 0.431 3.638 1.277 3.621 1.404 0.724 0.169 2.500 2.774 9.229 0.717 1.086 0.093 0.570 0.525 0.957 3.870 0.370 0.213 2.489 1.565 616 chr17 43501050 43526698 + 0 NA non-coding (NR_027774, exon 11 of 11) non-coding (NR_027774, exon 11 of 11) -3592 NM_174919 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 2.836 0.527 0.578 0.755 1.691 0.578 0.711 0.884 nan 1.934 1.532 0.873 0.836 1.723 1.795 2.017 0.945 0.392 0.117 0.071 1.748 1.904 0.606 0.383 1.506 0.736 0.378 0.590 0.956 1.708 1.483 0.610 2.341 2.892 0.750 0.753 2.102 1.731 0.509 0.804 0.294 0.256 81 chr1 151848042 151885266 + 0 NA intron (NM_053055, intron 2 of 5) intron (NM_053055, intron 2 of 5) 15707 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 0.421 0.364 0.125 0.510 0.991 0.626 0.345 0.311 9.778 4.338 0.363 0.557 0.286 0.249 0.702 0.835 0.107 0.411 0.210 0.044 0.438 0.259 0.150 0.541 0.362 0.275 0.218 0.122 0.266 0.372 0.308 1.263 2.044 0.610 0.454 0.586 0.898 0.549 0.598 0.075 0.063 0.032 33 chr1 40704777 40712181 + 0 NA Intergenic AluSc8|SINE|Alu -5094 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 0.165 0.612 0.092 0.587 0.958 0.084 1.422 1.269 0.715 0.325 0.413 1.380 0.618 0.710 0.495 6.307 0.039 0.789 0.202 0.093 1.441 0.927 0.079 0.106 0.275 0.160 0.190 2.619 1.162 0.066 0.549 0.032 0.294 0.629 0.311 0.082 0.225 0.118 0.726 1.142 0.140 0.047 676 chr18 52753612 52771460 + 0 NA Intergenic Intergenic 29001 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 0.265 0.416 0.087 0.138 0.231 0.159 0.316 0.390 1.353 0.353 0.812 0.443 0.092 1.262 0.448 0.172 0.069 1.174 0.050 0.008 3.078 2.963 0.021 0.072 0.098 0.030 0.039 0.741 0.119 0.497 0.047 0.563 0.145 0.251 0.016 0.329 0.055 0.055 0.225 0.321 0.558 0.562 660 chr17 79867772 79877569 + 0 NA intron (NM_016538, intron 5 of 9) intron (NM_016538, intron 5 of 9) -3317 NM_001256434 5833 Hs.569843 NM_002861 ENSG00000185813 PCYT2 ET phosphate cytidylyltransferase 2, ethanolamine protein-coding 1.399 2.582 0.133 1.214 2.708 0.901 1.834 0.602 5.056 3.417 1.398 1.491 0.543 0.869 1.267 2.298 0.324 0.879 0.538 0.396 1.523 1.529 0.839 1.265 1.227 0.703 0.378 0.477 1.038 1.579 1.933 0.776 1.873 4.341 0.859 0.955 1.971 1.735 0.313 1.004 0.273 0.114 726 chr19 42770547 42791400 + 0 NA intron (NM_001304815, intron 2 of 20) intron (NM_001304815, intron 2 of 20) -7844 NM_015125 23152 Hs.388236 NM_015125 ENSG00000079432 CIC - capicua transcriptional repressor protein-coding 2.767 4.758 0.711 1.120 3.352 2.446 1.731 0.600 nan 2.083 3.071 1.179 2.627 0.882 1.039 1.430 1.684 3.082 1.111 0.905 1.407 1.570 3.056 2.485 2.527 1.274 0.718 0.538 1.838 5.400 8.725 1.628 0.930 3.386 0.981 0.922 1.098 3.190 0.681 2.284 1.298 0.837 797 chr2 121667658 121674749 + 0 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 116336 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 2.919 3.114 0.187 0.059 0.882 1.951 1.982 0.963 0.195 0.251 0.020 1.641 2.603 0.162 3.125 0.136 0.924 0.060 4.784 4.988 0.498 3.489 5.525 2.048 1.178 0.943 9.294 5.983 0.179 0.401 2.116 0.081 0.433 1.333 0.236 0.566 0.599 0.431 5.691 3.694 1170 chr6 157097518 157104171 + 0 NA promoter-TSS (NR_039676) promoter-TSS (NR_039676) 21 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 4.050 4.120 3.106 0.938 4.774 5.629 4.535 0.888 14.272 10.575 5.354 0.738 1.549 2.218 3.832 2.408 2.196 2.315 1.941 5.040 2.461 4.053 1.697 3.528 5.824 7.425 3.379 3.291 2.968 5.274 10.076 1.544 4.069 5.050 4.025 1.505 4.386 6.026 3.327 3.281 3.199 2.101 532 chr16 69597206 69603801 + 0 NA promoter-TSS (NR_031719) promoter-TSS (NR_031719) 634 NM_173214 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T-cells 5 protein-coding 4.285 6.346 1.635 1.489 4.481 7.061 4.630 1.315 2.540 2.161 3.509 1.910 1.775 1.589 5.480 2.296 3.230 3.008 1.889 3.486 4.292 4.648 3.547 2.159 8.590 10.089 4.528 2.759 3.938 6.377 5.025 2.942 3.700 6.381 4.628 1.575 1.757 5.222 2.992 2.129 2.585 1.938 284 chr12 6468386 6504299 + 0 NA intron (NM_001270987, intron 1 of 9) intron (NM_001270987, intron 1 of 9) 181 NM_001159575 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 2.398 1.950 1.084 1.086 2.810 0.496 4.722 1.874 8.438 4.262 3.712 1.253 1.236 2.304 3.742 2.912 1.414 2.196 1.491 0.077 2.901 3.214 0.678 2.579 2.625 1.277 0.625 2.764 3.491 7.157 3.731 1.219 2.735 2.671 3.003 1.413 3.174 1.799 1.627 0.700 2.313 1.943 255 chr11 75033923 75064439 + 0 NA intron (NM_020251, intron 1 of 14) L2b|LINE|L2 -2951 NR_029891 442900 NR_029891 ENSG00000199090 MIR326 MIRN326|hsa-mir-326|mir-326 microRNA 326 ncRNA 0.177 1.385 0.086 1.106 1.781 0.233 0.222 0.727 7.660 2.236 2.454 0.969 0.638 1.016 1.281 2.459 1.188 0.837 2.288 0.068 1.363 0.875 0.338 0.353 3.306 0.472 0.342 0.813 0.272 1.714 0.471 1.168 4.531 1.959 6.420 0.265 4.458 2.601 1.734 0.275 0.059 0.027 642 chr17 73142883 73158794 + 0 NA promoter-TSS (NM_001288609) promoter-TSS (NM_001288609) -60 NR_109933 51155 Hs.532803 NM_016185 ENSG00000189159 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 3.040 1.378 0.476 0.869 2.564 0.782 1.137 1.968 3.811 2.299 1.640 1.718 0.534 1.008 1.451 4.687 0.260 0.892 0.244 0.401 1.057 0.838 0.484 1.573 1.182 0.800 0.454 0.703 0.734 1.908 1.336 0.719 1.234 3.150 2.230 0.870 1.091 1.414 1.191 0.757 0.510 0.242 1188 chr7 17393025 17491776 + 0 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 27859 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 0.413 0.336 0.014 0.112 0.222 1.330 0.625 0.189 4.450 1.300 1.448 0.240 0.169 0.501 0.370 0.195 0.397 0.489 0.083 0.014 0.683 0.377 0.108 1.173 0.533 0.082 0.044 0.174 0.399 0.445 0.037 0.417 1.398 0.125 0.308 0.624 0.602 0.585 0.495 0.226 0.058 0.026 343 chr12 66015321 66093162 + 0 NA Intergenic Intergenic -18089 NR_120431 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 1.602 0.742 0.135 0.880 1.138 1.248 1.154 2.855 3.904 2.185 1.104 1.723 2.831 1.645 0.614 3.106 0.023 5.061 0.066 0.255 0.658 0.250 0.014 0.244 1.401 0.573 0.366 0.923 3.400 0.146 1.542 0.067 0.300 0.510 2.325 0.209 0.182 0.560 0.442 0.968 0.953 1.173 92 chr1 154939142 154951256 + 0 NA intron (NM_001130041, intron 1 of 12) intron (NM_001130041, intron 1 of 12) 1760 NM_001202859 6464 Hs.433795 NM_003029 ENSG00000160691 SHC1 SHC|SHCA SHC adaptor protein 1 protein-coding 3.454 6.613 1.950 2.723 6.430 11.967 4.473 3.214 8.779 5.746 4.206 3.982 5.052 4.889 4.474 5.095 2.421 5.246 2.837 2.898 5.856 7.940 3.328 9.992 10.417 11.430 3.996 3.387 7.201 6.943 5.809 10.942 8.553 7.109 6.811 3.100 2.747 15.179 7.233 4.452 6.916 5.511 1035 chr5 10351730 10356409 + 0 NA intron (NM_001270661, intron 1 of 22) CpG 318 NM_001270661 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 4.827 3.760 2.144 3.030 11.914 4.994 7.047 2.431 13.588 11.256 9.823 2.689 2.247 2.158 5.012 5.301 3.125 3.947 2.610 5.115 3.100 4.430 2.610 4.167 6.528 8.283 3.969 2.657 2.416 4.086 4.408 4.697 3.828 16.537 5.049 2.959 4.969 5.782 4.655 1.786 2.104 1.366 968 chr3 158434725 158451214 + 0 NA intron (NM_002888, intron 1 of 3) intron (NM_002888, intron 1 of 3) 7306 NM_206963 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 1.514 0.607 0.030 0.215 0.448 3.182 0.235 0.200 0.781 0.239 0.213 0.700 0.309 0.265 2.101 1.342 0.435 2.242 0.104 0.042 0.381 0.179 0.415 3.309 0.341 0.300 0.176 0.088 0.109 3.693 0.367 1.051 4.612 0.230 0.812 0.200 3.111 1.894 0.556 0.866 0.028 0.018 426 chr14 75642290 75652666 + 0 NA Intergenic AluSz|SINE|Alu -4129 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 1.033 0.676 4.089 0.169 0.397 1.642 1.027 0.459 2.464 2.130 3.109 0.765 0.512 0.611 3.249 0.652 0.633 0.827 0.688 0.567 1.491 1.408 0.523 1.121 1.167 0.747 0.395 0.602 1.093 1.721 1.351 0.772 1.726 0.513 0.846 0.717 1.476 1.367 0.974 1.554 0.492 0.263 87 chr1 153956522 153966616 + 0 NA Intergenic AluSq2|SINE|Alu -1670 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 1.709 2.302 0.456 0.960 1.918 1.851 1.289 1.344 16.751 13.338 1.586 1.885 2.402 2.146 1.834 2.298 0.758 2.261 1.801 1.207 2.139 1.929 0.843 4.036 4.458 2.571 1.332 0.906 1.792 2.422 2.362 4.493 5.301 1.918 2.796 1.405 2.194 6.597 2.498 1.687 1.250 0.953 98 chr1 155138932 155150690 + 0 NA intron (NM_173852, intron 3 of 4) intron (NM_173852, intron 3 of 4) 993 NM_173852 200185 Hs.516671 NM_173852 ENSG00000163463 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding 1.065 1.244 0.396 0.563 1.347 4.232 0.991 0.670 2.606 1.227 1.859 1.132 0.987 0.790 0.851 0.779 0.862 1.237 4.396 0.435 0.780 0.662 1.448 1.224 1.904 0.749 0.401 0.312 0.584 1.239 1.673 3.376 2.039 1.121 1.242 0.613 1.169 5.109 1.034 0.906 0.397 0.226 65 chr1 150458783 150461466 + 0 NA intron (NM_001271896, intron 1 of 13) intron (NM_001271896, intron 1 of 13) 284 NR_073514 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 2.380 2.418 0.231 1.574 2.373 1.628 2.042 0.786 25.336 20.940 2.549 1.451 1.711 2.283 1.960 2.747 0.757 2.761 3.633 0.989 2.553 1.911 1.052 2.260 2.302 2.715 1.195 1.205 1.356 2.093 3.714 6.264 6.759 2.163 3.193 1.865 2.960 4.025 2.906 0.877 1.330 0.871 1336 chrX 40030579 40036944 + 0 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) 2821 NM_001123384 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 2.091 2.326 1.830 0.297 0.863 3.292 3.697 1.389 4.992 2.231 2.605 0.854 1.938 2.350 2.761 3.194 0.478 2.573 3.367 7.601 2.207 3.512 2.224 2.284 1.460 6.183 2.554 1.574 2.115 1.889 3.635 2.830 4.364 0.696 0.481 0.710 1.954 5.240 2.153 2.165 1.249 0.743 67 chr1 150506875 150511942 + 0 NA Intergenic Intergenic -12437 NM_019032 54507 Hs.516243 NM_019032 ENSG00000143382 ADAMTSL4 ADAMTSL-4|ECTOL2|TSRC1 ADAMTS like 4 protein-coding 0.268 1.113 0.025 0.673 1.276 0.327 0.134 2.169 2.964 1.023 0.336 0.116 0.209 0.392 0.378 0.904 0.566 0.175 0.052 0.054 0.464 0.157 2.204 0.223 1.325 8.814 3.504 0.319 0.310 0.774 0.916 0.198 1.042 0.713 0.253 0.629 0.263 1.400 0.716 6.177 3.732 311 chr12 31223578 31235333 + 0 NA intron (NM_152438, intron 1 of 26) MIRb|SINE|MIR -2674 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 2.074 2.601 1.828 2.311 4.905 0.874 3.254 1.719 4.573 2.389 3.409 1.752 2.328 1.410 2.159 2.706 0.818 1.818 0.676 1.310 2.299 2.647 0.480 1.294 3.267 2.673 1.199 2.425 3.759 1.475 3.719 1.471 2.287 6.556 3.463 0.997 0.719 2.392 1.471 7.247 1.607 1.311 294 chr12 10329400 10347214 + 0 NA intron (NM_153022, intron 2 of 3) AluSx|SINE|Alu 6750 NM_153022 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 0.096 0.132 0.223 0.096 0.099 0.117 0.099 0.012 0.233 0.073 0.234 0.024 0.013 0.048 0.768 0.103 0.426 0.114 0.066 0.047 0.077 0.036 0.871 0.082 2.245 0.105 0.061 0.087 0.264 0.315 0.104 0.044 0.182 0.060 0.036 0.048 0.465 4.412 0.027 0.026 0.145 0.054 542 chr16 86956584 86966653 + 0 NA Intergenic Intergenic -129772 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LOC440390 - uncharacterized LOC440390 ncRNA 0.076 0.487 0.012 0.037 0.063 0.056 0.102 0.010 0.063 0.088 0.070 0.854 0.033 0.048 0.365 7.232 0.030 0.041 1.249 0.565 0.007 0.074 2.188 0.514 0.209 0.045 6.508 0.097 0.070 0.055 0.053 0.070 0.230 0.061 0.130 0.070 0.188 2.181 0.023 0.005 1246 chr8 61590509 61593948 + 0 NA intron (NM_017780, intron 1 of 37) CpG 904 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 2.540 5.338 1.534 0.729 7.095 1.413 4.903 1.183 10.492 7.010 5.908 0.987 2.520 1.760 2.179 2.043 2.418 2.020 3.492 4.360 1.842 1.820 4.467 0.854 4.527 8.207 3.813 3.194 3.213 6.899 11.376 5.023 3.802 12.128 1.946 2.228 2.028 7.020 2.084 2.177 1.674 0.950 399 chr14 29223725 29245479 + 0 NA promoter-TSS (NR_125758) promoter-TSS (NR_125758) -77 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.060 1.637 1.001 0.890 2.404 0.315 0.065 0.014 14.658 8.257 0.103 0.054 0.055 0.030 0.044 0.101 3.491 0.032 0.013 0.130 0.043 0.014 0.119 0.593 0.028 0.032 0.033 0.142 0.153 1.390 0.122 0.037 2.403 0.013 0.051 0.053 0.142 0.058 0.038 0.008 0.012 783 chr2 85481729 85491967 + 0 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 46073 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA 0.700 0.107 4.668 0.074 0.280 0.129 0.099 0.041 1.221 0.211 2.922 0.039 0.046 0.064 1.911 0.153 3.264 0.163 0.020 0.090 0.073 0.189 0.098 0.249 0.110 0.092 0.143 0.132 0.321 0.097 0.027 0.059 0.459 0.064 0.035 2.268 0.190 0.062 0.133 0.090 0.030 476 chr15 96804446 96818101 + 0 NA intron (NR_102743, intron 7 of 7) intron (NR_102743, intron 7 of 7) -57884 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 3.707 0.272 1.286 0.446 0.537 0.507 1.450 2.412 0.515 0.106 0.789 0.654 0.360 1.876 2.636 1.684 0.545 2.207 0.051 0.474 0.195 0.836 0.120 1.481 1.081 0.525 0.956 3.643 0.687 0.418 3.520 1.140 0.226 0.027 0.907 0.659 0.624 0.970 1.331 4.318 4.573 1302 chr9 86589570 86603402 + 0 NA promoter-TSS (NM_002140) promoter-TSS (NM_002140) -789 NM_002140 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 2.137 1.825 2.728 1.126 2.976 1.633 3.054 0.870 4.148 2.934 1.376 1.468 0.819 1.325 1.886 2.862 1.037 1.374 0.908 1.274 1.998 2.652 1.321 3.218 3.390 2.854 1.303 1.243 2.433 2.049 3.013 0.950 2.060 3.995 1.913 1.126 1.120 2.001 1.948 1.335 1.478 1.036 706 chr19 18459431 18505193 + 0 NA Intergenic Intergenic -14458 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 0.741 0.395 0.228 0.473 0.931 0.417 1.471 0.550 nan 4.303 3.344 0.440 0.260 0.845 2.313 0.868 0.767 0.865 0.582 0.245 1.283 0.769 0.610 1.670 1.024 1.237 0.631 0.748 0.703 2.795 1.743 4.082 0.856 1.230 0.706 1.313 1.170 2.534 1.530 0.346 0.628 0.587 2 chr1 947649 961732 + 0 NA promoter-TSS (NM_001305275) promoter-TSS (NM_001305275) -813 NM_001305275 375790 Hs.273330 NM_198576 ENSG00000188157 AGRN CMS8|CMSPPD agrin protein-coding 4.654 3.367 3.332 1.033 3.151 3.563 3.736 1.541 nan 3.416 2.898 1.943 0.745 1.647 2.213 2.630 1.075 1.023 1.126 0.582 1.103 1.324 2.531 0.972 3.794 3.376 1.545 1.834 1.136 2.383 2.681 1.255 1.482 4.816 3.050 1.083 2.095 6.129 1.352 2.509 1.767 0.894 889 chr21 35050232 35060292 + 0 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 40478 NM_001001132 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 1.438 0.421 4.103 0.245 1.571 0.359 0.420 0.449 2.346 0.966 1.407 0.364 0.176 0.108 0.850 0.779 1.590 1.082 0.250 0.041 0.740 0.311 0.441 0.930 0.350 0.569 0.513 0.551 0.291 0.235 0.540 0.110 0.301 2.173 0.676 0.377 0.398 0.127 0.823 0.105 0.727 0.491 579 chr17 34897906 34905075 + 0 NA 5' UTR (NM_024835, exon 2 of 14) 5' UTR (NM_024835, exon 2 of 14) 753 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 11.098 4.960 0.788 1.746 5.522 5.639 4.333 1.484 4.918 3.408 4.177 1.763 2.401 3.486 3.375 3.222 1.481 1.099 1.237 2.416 2.625 3.299 2.605 5.049 5.768 2.765 1.266 1.690 4.820 5.149 2.659 2.842 2.905 6.993 2.552 2.217 2.249 4.643 2.879 2.638 2.747 1.682 332 chr12 58118667 58121381 + 0 NA promoter-TSS (NR_027032) promoter-TSS (NR_027032) 1 NR_027032 100130776 Hs.656080 NR_027032 ENSG00000255737 AGAP2-AS1 PUNISHER AGAP2 antisense RNA 1 ncRNA 1.453 3.492 0.160 0.208 1.046 1.439 3.080 0.624 3.926 1.900 0.468 0.596 1.167 1.432 0.565 0.421 1.168 3.716 2.619 1.876 1.834 2.249 2.084 1.215 1.492 0.996 1.476 2.432 5.008 2.960 1.685 1.067 0.636 19.888 0.046 0.760 9.348 1.630 0.196 0.911 0.597 1223 chr7 149995952 150024143 + 0 NA intron (NM_001164458, intron 1 of 7) LTR7C|LTR|ERV1 -9978 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C protein-coding 1.494 0.645 0.191 0.816 1.434 0.235 1.204 0.553 0.876 0.467 0.840 0.681 0.217 1.616 4.830 0.969 0.352 4.307 0.656 0.035 2.522 2.379 0.457 0.166 0.326 0.456 0.216 0.382 0.623 0.202 0.073 0.514 0.786 0.792 0.069 0.746 0.601 0.753 1.144 0.087 0.110 0.056 868 chr20 50594843 50639227 + 0 NA Intergenic AluY|SINE|Alu 104988 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 0.235 0.149 0.039 0.231 0.779 0.096 0.239 0.367 5.074 1.369 1.601 0.340 0.064 0.334 0.359 0.482 0.280 0.359 0.041 0.671 0.232 0.154 0.074 0.229 0.583 0.144 0.107 0.335 0.302 0.422 0.071 0.096 0.461 0.704 0.048 0.270 0.082 0.281 0.413 0.214 0.051 0.025 78 chr1 151728081 151749369 + 0 NA promoter-TSS (NM_016178) promoter-TSS (NM_016178) -406 NM_016178 51686 Hs.713789 NM_016178 ENSG00000143450 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 0.826 0.483 0.358 0.985 1.419 0.354 1.243 1.081 14.524 9.236 1.494 1.204 0.493 1.719 0.659 3.041 0.279 0.412 0.338 0.192 0.569 0.531 0.285 0.714 0.523 0.363 0.143 1.095 0.428 0.562 0.687 1.781 2.995 1.951 0.615 0.488 1.146 0.797 0.707 0.390 0.218 0.132 519 chr16 57017052 57026198 + 0 NA Intergenic Intergenic -1772 NM_001330552 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 0.441 2.984 2.233 3.919 0.489 6.857 1.139 2.037 0.501 0.687 1.958 1.343 10.257 1.274 3.227 0.660 1.495 1.239 0.060 4.825 4.320 0.984 1.616 1.280 0.805 0.647 3.712 1.736 1.521 0.912 4.447 2.091 4.044 3.616 0.362 0.263 0.517 2.616 0.342 0.643 0.272 224 chr11 63604569 63617438 + 0 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) 4603 NM_001163297 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 1.431 1.425 1.203 0.753 2.020 0.978 1.073 0.953 8.931 3.671 3.272 0.745 0.455 1.100 2.618 2.157 0.997 0.585 0.848 0.375 1.178 0.959 1.088 1.054 1.567 1.111 0.492 1.191 0.763 2.167 1.313 0.547 2.449 2.140 0.917 0.427 2.134 1.256 0.621 0.647 0.224 0.155 1125 chr6 34189490 34220327 + 0 NA 5' UTR (NM_145902, exon 1 of 5) 5' UTR (NM_145902, exon 1 of 5) 258 NM_145902 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 4.971 2.387 0.679 1.309 3.920 4.277 2.398 1.949 3.884 2.652 1.499 2.076 1.454 1.823 4.662 6.042 0.443 2.231 0.502 1.030 2.441 2.264 0.648 1.950 6.893 3.607 1.506 1.295 7.102 2.075 6.325 1.908 1.716 3.856 4.056 0.841 1.196 5.514 1.454 1.008 3.250 3.274 1119 chr6 31758755 31765035 + 0 NA intron (NM_006295, intron 2 of 29).5 AluSx1|SINE|Alu 1817 NM_006295 7407 Hs.520026 NM_006295 ENSG00000204394 VARS G7A|VARS1|VARS2 valyl-tRNA synthetase protein-coding 5.518 3.763 1.253 1.631 5.914 4.802 2.436 2.063 5.525 4.827 3.356 2.076 1.280 2.835 4.127 7.427 1.246 2.661 1.979 3.797 2.886 3.475 1.372 3.845 8.022 5.582 2.501 2.687 4.178 2.758 7.498 3.118 3.122 7.030 7.138 1.931 2.182 8.127 4.469 2.506 3.154 2.264 344 chr12 66131165 66137087 + 0 NA Intergenic Intergenic -84114 NM_001300919 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 1.251 3.520 0.201 0.386 0.967 0.754 0.092 0.018 2.687 1.490 1.628 1.335 0.460 0.104 0.104 0.130 0.016 5.072 0.083 6.779 0.454 0.229 0.089 0.456 0.078 0.580 0.536 0.324 0.389 1.704 9.015 0.160 0.045 1.337 1.001 0.103 0.267 3.831 0.094 0.052 0.992 0.764 1069 chr5 131823541 131837060 + 0 NA Intergenic Intergenic -3835 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 2.635 4.110 2.298 1.438 3.387 4.410 2.316 1.760 5.116 2.359 2.703 1.776 1.334 4.118 2.154 2.899 1.766 3.407 1.107 0.083 2.971 2.943 1.531 2.237 4.915 3.018 1.353 2.550 4.799 4.309 3.501 2.231 2.999 3.009 3.191 1.631 1.969 3.397 1.749 2.277 3.012 1.903 450 chr15 63765259 63811441 + 0 NA Intergenic Intergenic -8360 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 0.853 1.221 1.067 0.600 0.948 1.068 0.787 0.719 4.891 2.606 1.518 0.994 0.425 0.981 0.803 1.389 0.172 1.203 0.533 0.741 0.831 0.655 0.317 1.539 1.261 0.754 0.346 0.542 0.974 3.473 0.480 1.360 3.083 1.061 0.930 0.969 1.446 0.449 0.771 0.412 0.292 0.245 1153 chr6 106227569 106268354 + 0 NA Intergenic Intergenic -286234 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 0.286 0.092 0.014 0.521 0.745 0.110 0.140 0.433 4.262 0.538 0.374 0.502 0.182 0.809 1.120 0.447 0.171 1.034 0.022 0.017 1.059 0.568 0.031 0.336 0.194 0.126 0.101 0.259 0.287 0.531 0.415 0.124 0.855 0.242 0.111 0.448 0.221 0.148 0.212 0.130 0.035 0.025 386 chr13 98864886 98869884 + 0 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 6607 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 0.428 0.476 0.471 3.697 5.959 0.031 1.297 1.225 13.620 5.283 2.312 1.908 0.698 1.329 4.220 2.276 0.288 0.036 0.081 0.757 0.490 0.044 0.108 0.406 0.097 0.031 0.665 0.343 0.195 0.197 0.267 0.588 3.769 0.369 0.559 0.364 0.067 0.047 0.556 0.440 0.525 582 chr17 36056556 36079291 + 0 NA intron (NM_001304286, intron 5 of 6) MamSINE1|SINE|tRNA 37146 NM_001304286 6928 Hs.191144 NM_000458 ENSG00000275410 HNF1B FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HNF1 homeobox B protein-coding 5.236 0.165 0.052 0.369 0.289 0.489 0.387 1.124 0.791 0.399 0.849 0.382 0.345 1.148 0.182 0.417 0.017 0.115 0.592 0.043 0.760 0.442 0.058 0.859 0.178 0.077 0.058 0.369 0.296 2.339 0.044 3.958 0.822 0.567 0.076 0.344 0.208 0.129 0.214 0.295 0.162 0.101 211 chr11 46309917 46323214 + 0 NA intron (NM_052854, intron 1 of 11) intron (NM_052854, intron 1 of 11) 17376 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 0.857 4.182 0.009 1.552 1.312 0.047 0.190 1.467 4.638 2.088 1.018 0.948 1.969 1.043 1.043 5.126 0.130 1.624 0.038 0.094 2.474 2.255 0.361 0.251 1.332 0.557 0.328 0.619 5.821 0.567 0.892 0.564 0.444 0.908 0.349 0.208 0.019 0.619 3.786 4.678 0.113 0.027 337 chr12 58253691 58261352 + 0 NA Intergenic Intergenic -16774 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 1.523 1.081 0.973 0.587 1.456 2.747 2.570 0.797 3.941 1.761 2.395 0.594 0.753 1.134 1.348 1.197 0.651 2.529 0.080 0.887 1.556 1.480 1.749 1.268 2.358 1.772 0.800 0.888 2.818 2.370 3.270 1.307 2.115 1.699 13.167 1.069 1.315 3.322 1.221 0.572 1.015 0.756 1292 chr9 14309600 14327315 + 0 NA intron (NM_001190738, intron 1 of 8) intron (NM_001190738, intron 1 of 8) -4412 NM_005596 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 2.645 2.268 1.738 0.401 1.908 3.383 2.734 0.313 5.362 3.216 7.029 0.996 0.541 2.962 2.094 2.307 1.574 2.576 0.913 2.293 0.838 1.019 0.113 5.637 1.774 2.307 0.924 1.575 1.566 4.286 2.643 3.786 2.118 2.587 6.615 1.022 1.372 2.097 1.614 1.927 1.718 1.035 1135 chr6 41883866 41890794 + 0 NA intron (NR_131160, intron 1 of 2) intron (NR_131160, intron 1 of 2) 1351 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|TRFP mediator complex subunit 20 protein-coding 3.015 2.470 0.766 0.940 2.227 5.010 2.070 1.583 2.973 2.184 2.257 1.137 1.375 1.679 3.291 7.106 0.774 3.876 0.866 1.186 4.317 4.338 1.739 5.235 3.502 6.908 3.029 1.265 6.979 2.350 3.478 1.304 1.380 4.821 5.327 1.340 1.204 2.876 3.482 1.741 5.727 4.675 266 chr11 118777266 118811902 + 0 NA Intergenic Intergenic -12971 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 3.264 6.005 4.792 1.942 4.626 7.717 6.915 3.315 8.631 7.703 3.611 4.178 3.195 6.004 8.122 6.053 3.346 2.944 1.302 0.984 4.057 5.754 3.356 6.449 23.102 8.502 3.131 5.853 6.715 5.308 6.175 2.989 5.990 6.417 9.143 2.886 6.490 6.808 4.560 6.065 3.378 2.279 1310 chr9 110497970 110522352 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -258160 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 1.133 1.378 0.028 1.711 2.700 0.343 2.934 1.131 5.525 2.157 1.037 1.836 1.005 1.910 1.674 4.285 0.658 2.239 0.057 0.023 1.652 1.342 0.152 1.269 3.427 3.024 1.199 1.598 1.305 0.778 1.230 0.847 1.465 1.999 1.907 0.968 0.879 0.448 1.169 0.417 0.094 0.069 702 chr19 17344895 17372543 + 0 NA Intergenic Intergenic -2568 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 1.077 1.507 0.799 0.472 1.886 1.978 1.042 0.602 nan 2.104 2.269 0.576 0.210 0.800 3.268 1.087 1.272 0.793 0.973 1.060 1.320 1.254 1.327 1.440 1.047 1.493 0.791 1.639 0.572 3.126 2.265 1.141 1.146 1.564 1.180 0.927 1.797 2.571 1.203 0.090 0.229 0.125 518 chr16 54954857 54973551 + 0 NA promoter-TSS (NM_001252197) promoter-TSS (NM_001252197) -907 NM_005853 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 0.726 1.959 0.231 0.010 0.113 0.290 3.462 0.441 1.872 1.107 3.339 0.842 2.293 3.432 0.866 0.186 2.486 0.626 0.942 0.681 4.059 5.227 0.508 0.561 1.795 1.506 0.784 0.259 0.147 1.520 1.368 3.752 3.503 0.206 1.447 0.052 0.691 1.791 4.033 3.621 0.453 0.304 810 chr2 201976739 202023951 + 0 NA intron (NM_001127183, intron 3 of 9) intron (NM_001127183, intron 3 of 9) 2657 NM_001202518 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD like apoptosis regulator protein-coding 2.991 1.818 1.109 1.654 3.502 12.594 4.594 2.601 3.437 2.195 3.471 1.366 1.659 3.569 1.622 4.354 0.737 1.990 0.269 0.774 4.774 5.491 1.417 2.417 6.093 3.347 1.372 3.480 1.723 2.492 1.939 0.932 0.920 3.184 5.858 0.731 0.703 1.805 1.595 1.856 2.681 2.359 502 chr16 18809825 18817521 + 0 NA promoter-TSS (NM_001313858) promoter-TSS (NM_001313858) -673 NM_015161 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 3.599 6.190 0.828 0.809 2.740 2.069 2.294 0.523 3.070 1.673 0.950 1.196 1.167 1.459 2.219 2.392 1.625 2.683 0.508 0.397 2.018 1.945 1.119 6.825 4.457 1.286 0.929 0.888 2.650 2.608 2.733 2.372 3.158 2.483 5.874 0.727 0.613 2.282 2.257 1.125 1.811 1.444 1202 chr7 56126666 56133628 + 0 NA intron (NM_001762, intron 12 of 13) intron (NM_001762, intron 12 of 13) -1770 NM_001146333 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 3.839 1.813 1.157 0.407 1.580 1.678 2.809 0.955 2.768 2.557 10.778 0.400 1.120 0.958 4.661 2.234 1.416 3.657 1.137 1.252 1.701 1.780 1.256 0.811 2.869 1.660 0.864 2.092 3.191 1.880 3.297 1.052 1.344 1.088 4.358 1.503 0.734 2.588 4.290 2.624 6.026 5.952 1177 chr7 5547745 5554845 + 0 NA intron (NM_001321213, intron 1 of 4) AluY|SINE|Alu 2134 NM_001321213 80028 Hs.623974 NM_024963 ENSG00000155034 FBXL18 Fbl18 F-box and leucine rich repeat protein 18 protein-coding 4.907 4.559 1.390 0.863 1.714 2.099 3.097 1.683 nan 3.269 4.672 1.121 1.439 1.836 4.637 2.719 1.103 1.783 0.522 0.607 3.613 3.984 1.166 2.672 5.769 6.809 2.887 1.581 1.915 3.500 4.057 1.074 4.119 2.797 2.776 2.276 1.781 3.359 2.679 2.882 0.969 0.521 795 chr2 114038531 114047543 + 0 NA Intergenic Intergenic -6539 NM_013953 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 5.746 3.023 0.014 1.642 3.228 1.567 6.919 3.453 2.598 1.082 4.297 3.437 1.723 3.476 5.179 4.723 1.272 1.598 0.079 0.046 4.544 4.698 0.098 0.108 8.003 1.635 0.761 3.794 6.027 2.376 0.919 2.140 0.586 3.176 1.770 0.342 0.027 0.161 4.421 5.375 4.231 3.206 510 chr16 30536571 30548163 + 0 NA 3' UTR (NM_001305018, exon 3 of 3) 3' UTR (NM_001305018, exon 3 of 3) 3924 NM_001305019 65988 Hs.592032 NM_023931 ENSG00000169955 ZNF747 - zinc finger protein 747 protein-coding 4.053 3.926 2.129 0.969 2.058 3.803 3.543 0.774 4.958 3.109 3.721 1.716 0.723 2.666 4.662 1.246 1.920 1.527 4.976 1.865 1.796 2.308 2.108 3.050 3.591 2.081 0.953 1.856 1.293 3.507 5.058 4.164 5.210 2.352 3.971 1.321 2.374 4.494 1.954 1.463 1.336 0.929 140 chr1 226287756 226321836 + 0 NA Intergenic AluSx1|SINE|Alu 54368 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 2.031 0.920 0.736 0.495 1.210 0.234 1.549 1.079 4.890 1.828 1.068 0.586 0.285 2.075 1.099 1.727 0.325 0.605 0.976 0.569 1.467 1.481 0.528 1.773 1.053 0.633 0.325 1.451 0.591 1.831 0.675 1.384 1.099 1.068 0.489 0.969 0.683 1.312 0.408 0.176 0.154 0.084 975 chr3 181427380 181434987 + 0 NA 3' UTR (NM_003106, exon 1 of 1) 3' UTR (NM_003106, exon 1 of 1) 1471 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 0.565 0.062 4.431 0.896 3.134 0.090 0.304 0.042 8.950 5.136 5.503 2.125 0.342 0.949 0.146 0.318 0.239 0.012 0.829 1.666 0.183 0.047 0.029 1.970 0.169 0.674 0.307 1.710 0.640 1.382 1.249 1.413 0.202 2.265 1.749 1.866 0.281 0.604 1.417 0.497 0.235 0.134 349 chr12 95489996 95515258 + 0 NA intron (NM_018351, intron 9 of 20) intron (NM_018351, intron 9 of 20) -35223 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 2.784 0.626 0.064 0.923 1.704 4.477 2.500 1.300 4.387 2.458 1.524 0.848 0.860 2.116 0.744 2.200 0.197 1.434 0.173 0.016 1.864 1.675 0.768 0.208 1.006 1.064 0.491 1.884 1.096 0.951 1.072 0.234 0.645 1.678 2.613 0.275 2.902 1.041 0.320 0.257 1.092 1.041 598 chr17 39927275 39958463 + 0 NA promoter-TSS (NM_002230) promoter-TSS (NM_002230) 95 NM_021991 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 3.838 1.418 0.974 1.683 2.995 5.650 1.977 1.710 3.943 1.680 2.019 1.570 0.928 2.455 1.579 2.448 1.836 1.098 0.895 0.178 0.910 0.636 0.779 2.515 1.386 0.684 0.317 1.731 0.240 4.718 0.313 0.616 2.295 6.530 1.041 2.129 4.195 0.876 0.636 0.096 0.048 0.025 1099 chr6 2763283 2767132 + 0 NA promoter-TSS (NM_130395) promoter-TSS (NM_130395) -459 NM_130395 56897 Hs.236828 NM_020135 ENSG00000124535 WRNIP1 WHIP|bA420G6.2 Werner helicase interacting protein 1 protein-coding 2.793 4.907 2.071 1.383 6.988 3.468 2.664 1.739 7.546 5.222 2.653 1.398 0.886 1.080 2.465 2.572 1.458 3.128 2.588 1.298 3.125 4.418 1.553 2.792 6.422 3.836 1.903 0.609 6.101 4.021 7.910 2.758 2.334 10.834 4.032 0.999 2.281 7.946 5.296 2.428 1.331 0.906 260 chr11 100618391 100625043 + 0 NA intron (NM_152432, intron 1 of 23) AluSq2|SINE|Alu -63031 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.075 0.224 0.223 1.023 3.596 0.321 0.132 0.474 0.532 0.174 0.256 4.471 0.071 0.197 1.788 4.639 0.286 1.680 0.059 0.260 0.181 0.211 0.072 14.725 0.100 0.083 0.230 0.195 0.477 0.077 0.047 1.035 7.369 0.028 0.388 0.981 0.148 3.353 0.240 0.017 0.015 692 chr19 8418519 8436186 + 0 NA Intergenic Intergenic -1659 NR_104213 51129 Hs.9613 NM_016109 ENSG00000167772 ANGPTL4 ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158 angiopoietin like 4 protein-coding 0.285 1.688 0.081 0.495 0.883 3.442 0.903 0.809 2.291 0.679 0.536 0.347 0.712 0.889 0.364 1.497 0.616 1.447 0.059 0.072 1.105 0.765 0.855 0.945 0.960 0.642 0.292 0.418 3.489 1.685 3.215 1.372 1.509 1.612 3.300 0.338 0.716 1.968 0.745 0.550 0.838 0.715 604 chr17 40667138 40700858 + 0 NA Intergenic AluSx|SINE|Alu -3953 NM_000263 4669 Hs.50727 NM_000263 ENSG00000108784 NAGLU CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD N-acetyl-alpha-glucosaminidase protein-coding 1.401 2.603 0.265 1.644 2.880 3.744 2.104 1.415 nan 0.751 1.411 0.807 2.023 2.480 1.374 2.555 1.267 0.939 0.413 0.370 2.949 3.232 1.487 0.778 4.646 1.228 0.476 1.343 3.950 1.861 2.114 3.191 1.504 2.901 2.642 0.736 0.965 3.643 2.458 1.115 1.790 1.119 1325 chr9 137295839 137307277 + 0 NA intron (NM_001291921, intron 3 of 8) MIRb|SINE|MIR 3130 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.440 2.479 0.049 0.915 1.795 2.366 0.783 0.268 4.459 1.372 0.469 1.245 1.089 0.418 2.224 2.279 1.194 2.193 0.105 0.093 3.019 3.564 0.226 9.539 0.884 0.776 0.425 0.456 0.960 5.170 0.352 0.905 3.078 3.487 2.320 2.020 4.386 0.354 1.463 0.603 0.053 0.027 282 chr12 3065853 3070926 + 0 NA promoter-TSS (NM_003213) promoter-TSS (NM_003213) -89 NM_003213 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 4.389 4.920 2.754 0.746 2.058 4.294 4.721 1.016 5.173 2.216 1.706 0.636 0.795 2.628 2.983 1.635 1.350 1.833 0.685 1.526 1.893 2.664 2.734 2.523 5.515 5.356 2.078 2.135 3.599 6.484 7.313 2.143 1.871 3.088 3.185 1.035 2.362 14.773 1.591 1.345 3.323 2.011 553 chr17 4845492 4857439 + 0 NA intron (NM_005022, intron 1 of 2) CpG 916 NM_005022 5216 Hs.494691 NM_005022 ENSG00000108518 PFN1 ALS18 profilin 1 protein-coding 2.702 3.681 1.940 1.002 3.043 7.455 3.267 0.996 6.336 4.337 3.708 1.519 1.496 2.186 2.657 2.656 2.004 3.482 2.931 1.740 1.033 1.747 2.023 5.260 17.413 4.960 1.862 3.029 5.343 8.787 4.450 2.243 2.377 3.946 6.933 2.535 1.975 10.644 3.950 3.363 4.184 2.641 252 chr11 73017727 73021492 + 0 NA promoter-TSS (NM_014786) promoter-TSS (NM_014786) -54 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding 4.171 7.900 3.856 1.344 4.499 4.887 4.244 2.122 5.070 5.561 5.613 2.323 2.533 4.735 5.094 3.664 2.646 2.283 0.026 0.517 3.284 4.833 5.834 1.874 16.368 5.467 2.029 2.663 6.666 5.119 7.482 1.352 4.521 9.260 6.705 2.277 4.705 14.266 3.687 4.478 3.627 2.697 147 chr1 235489554 235494648 + 0 NA promoter-TSS (NM_016374) promoter-TSS (NM_016374) 232 NR_036605 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 6.781 5.359 1.967 1.512 5.726 2.752 5.240 3.303 8.726 5.509 5.376 2.049 1.346 4.888 6.347 5.326 2.105 4.042 1.389 4.192 4.335 4.573 2.614 6.966 7.062 5.798 2.310 2.879 5.643 4.746 4.265 4.455 8.202 5.290 4.001 2.256 2.555 3.669 5.824 2.598 3.483 2.056 133 chr1 203113488 203157645 + 0 NA 3' UTR (NM_000674, exon 4 of 4) 3' UTR (NM_000674, exon 4 of 4) 9376 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 0.056 0.291 0.053 1.033 1.442 0.079 0.619 0.711 4.366 1.222 0.818 0.410 0.518 1.491 0.949 2.112 0.140 0.147 0.039 0.034 3.352 2.959 0.094 0.110 2.172 0.061 0.050 0.885 0.768 0.149 0.060 0.061 0.745 0.738 2.588 0.155 0.356 1.022 1.044 0.145 2.999 3.019 648 chr17 76870703 76883501 + 0 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 22197 NM_001243540 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 3.764 3.472 0.524 1.317 2.575 0.478 1.776 1.644 3.574 0.937 0.237 2.694 2.346 1.159 0.798 4.795 1.249 1.746 0.040 0.087 2.372 2.314 2.572 1.864 3.942 2.116 0.851 1.325 6.004 2.455 2.743 0.117 1.677 4.779 0.260 1.531 1.278 0.332 1.567 0.594 2.984 2.673 932 chr3 11236679 11244813 + 0 NA intron (NM_001098212, intron 1 of 1) AluSg|SINE|Alu -26923 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 0.141 1.146 0.008 0.885 1.458 0.121 0.962 1.810 0.824 0.236 0.107 0.293 0.331 0.873 0.106 1.843 0.421 0.333 0.013 0.034 0.674 0.471 0.071 0.125 4.980 5.708 2.604 0.650 0.453 0.540 0.357 0.019 0.352 0.726 0.917 0.573 0.091 1.068 0.793 0.331 0.007 0.019 448 chr15 60683041 60719945 + 0 NA Intergenic Intergenic -11308 NM_001002857 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 3.776 2.519 2.747 1.018 2.136 2.529 1.595 1.246 4.465 2.177 1.706 2.122 1.054 1.901 0.564 1.908 1.335 1.899 0.068 0.259 2.013 2.371 1.063 2.374 2.814 1.122 0.534 1.135 5.297 3.420 1.764 0.787 2.221 2.676 2.908 1.909 1.496 1.744 1.759 1.699 2.706 2.546 960 chr3 138580147 138583992 + 0 NA Intergenic Intergenic 80793 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 5.098 0.563 0.033 2.266 3.352 0.130 8.208 4.693 8.770 2.457 3.054 3.011 2.455 5.466 2.407 9.155 2.017 2.808 3.408 0.109 5.374 5.577 0.212 2.308 1.087 0.752 0.426 8.421 5.473 2.456 5.449 3.089 2.509 3.105 3.363 2.482 0.843 0.729 4.497 2.133 1.066 1.129 1234 chr8 33739892 33754730 + 0 NA Intergenic Intergenic -289687 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 5.686 0.074 0.021 0.009 0.013 0.136 0.043 0.036 0.060 0.128 0.029 0.055 0.007 0.097 0.029 0.007 0.043 0.040 0.009 0.009 0.005 0.062 0.043 0.004 0.011 0.005 0.080 0.022 0.024 0.011 0.027 0.014 0.008 0.039 0.064 0.190 0.008 0.007 491 chr16 11587682 11602860 + 0 NA Intergenic AluJr|SINE|Alu 36155 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 1.049 0.725 0.053 0.449 0.952 0.948 0.698 0.453 7.781 1.490 1.372 1.002 0.360 0.496 0.337 1.284 1.766 1.047 0.277 0.246 0.743 0.463 0.266 1.727 0.918 0.203 0.082 0.358 0.409 2.382 1.539 1.752 1.989 0.507 1.497 0.832 0.994 1.001 0.510 0.621 1.003 1.048 467 chr15 80842064 80893475 + 0 NA intron (NM_014862, intron 14 of 18) intron (NM_014862, intron 14 of 18) -5675 NR_049837 100847042 NR_049837 ENSG00000172379 MIR5572 - microRNA 5572 ncRNA 0.598 0.249 0.074 0.489 0.642 0.182 0.193 1.401 6.416 1.019 1.379 1.047 0.534 0.897 0.680 2.237 0.089 0.573 0.152 0.046 1.291 0.838 0.024 0.065 0.600 0.184 0.116 0.368 1.035 0.580 0.040 2.244 3.976 0.426 1.501 2.079 1.687 0.128 0.383 0.474 0.055 0.033 385 chr13 95362023 95367327 + 0 NA promoter-TSS (NR_046514) promoter-TSS (NR_046514) 122 NM_007084 11166 Hs.187577 NM_007084 ENSG00000125285 SOX21 SOX25 SRY-box 21 protein-coding 0.093 0.045 0.059 2.455 7.025 0.671 0.077 0.061 5.632 3.478 0.331 0.606 0.335 0.018 2.676 0.017 0.035 0.020 0.052 0.300 0.151 0.069 0.102 0.417 0.238 0.250 0.435 0.149 2.010 0.512 1.874 1.386 5.565 3.309 1.403 0.888 1.104 0.367 0.044 0.033 0.019 927 chr22 50462708 50469749 + 0 NA Intergenic Intergenic -15173 NM_001001694 400935 Hs.526712 NM_001001694 ENSG00000188263 IL17REL - interleukin 17 receptor E like protein-coding 0.477 0.508 0.026 0.081 0.332 0.027 0.520 0.105 1.001 0.294 0.895 0.228 0.100 0.093 0.122 0.381 0.054 0.014 0.061 0.145 0.144 0.094 0.088 0.432 0.187 0.056 0.124 0.091 0.367 0.411 5.209 0.880 0.639 0.040 0.035 1.557 0.460 0.551 0.054 0.008 0.015 560 chr17 7735983 7749284 + 0 NA promoter-TSS (NM_001080424) promoter-TSS (NM_001080424) -602 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 2.470 2.894 3.664 1.240 4.663 3.443 3.292 0.898 7.383 8.449 6.511 2.066 0.961 1.194 1.844 2.083 2.185 2.088 3.248 5.087 0.982 1.325 1.668 3.885 6.713 3.902 1.447 3.522 2.458 5.068 5.684 1.879 1.695 9.447 5.420 2.423 2.643 8.561 2.850 2.054 3.158 1.772 811 chr2 208025454 208033095 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 1466 NM_003709 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 6.064 6.781 1.948 1.873 5.716 6.072 7.468 2.603 10.372 7.689 7.629 3.370 2.339 3.197 2.404 4.143 1.526 2.323 1.141 4.101 6.194 0.308 1.815 7.078 2.022 1.174 5.041 5.485 4.405 5.153 1.027 1.533 5.515 2.926 1.173 3.689 4.302 3.078 4.743 1.548 1.133 839 chr20 3774978 3802804 + 0 NA promoter-TSS (NR_109859) promoter-TSS (NR_109859) -250 NR_109859 101929125 Hs.744106 NR_109859 ENSG00000275491 LINC01730 - long intergenic non-protein coding RNA 1730 ncRNA 1.709 4.592 0.368 1.001 2.430 2.949 1.068 1.840 10.160 3.904 4.731 1.584 1.901 2.456 1.431 2.709 1.488 2.810 2.224 0.598 3.886 4.279 2.147 5.786 4.724 2.941 1.398 1.568 5.658 8.818 3.401 2.140 3.101 2.836 3.214 1.422 2.603 3.217 5.426 2.696 1.795 1.416 202 chr11 12694375 12720639 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 11538 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 2.715 2.476 1.660 1.015 2.644 1.983 2.981 2.167 6.398 3.217 4.100 0.886 1.484 2.464 2.430 3.092 0.756 2.119 1.130 0.823 2.361 1.994 1.283 4.755 2.410 1.996 0.975 1.672 2.969 3.567 1.303 1.366 2.150 3.108 3.659 1.970 1.862 1.558 1.422 1.767 1.046 1.018 713 chr19 36388937 36398117 + 0 NA exon (NM_014266, exon 1 of 4) exon (NM_014266, exon 1 of 4) 145 NM_014266 10870 Hs.117339 NM_014266 ENSG00000126264 HCST DAP10|KAP10|PIK3AP hematopoietic cell signal transducer protein-coding 1.670 2.820 1.127 0.639 2.159 1.302 1.826 0.529 2.676 1.627 1.392 0.750 0.663 1.226 1.344 1.175 1.494 0.985 1.016 0.724 1.813 1.446 2.612 0.935 2.740 2.211 1.097 0.310 0.805 3.666 9.277 1.385 1.081 2.473 1.259 0.761 0.903 2.791 0.564 1.632 0.634 0.354 836 chr20 630325 649838 + 0 NA Intergenic LTR67B|LTR|ERVL -6067 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 0.464 1.527 0.207 0.233 0.514 1.149 0.206 0.179 1.374 0.660 0.423 0.150 0.223 0.420 1.066 0.379 0.231 1.169 0.155 0.839 1.545 1.672 0.746 4.456 1.123 1.215 0.427 0.264 0.994 5.174 1.086 0.397 1.291 0.654 0.777 1.049 1.476 1.129 0.633 0.215 0.611 0.370 1322 chr9 130597181 130603791 + 0 NA intron (NM_001114753, intron 2 of 14) MER115|DNA|hAT-Tip100 8960 NM_001278138 2022 Hs.76753 NM_000118 ENSG00000106991 ENG END|HHT1|ORW1 endoglin protein-coding 0.162 2.940 0.028 2.273 3.981 0.029 3.472 0.928 0.946 0.257 0.174 3.182 3.223 1.699 0.894 2.948 0.028 0.085 0.015 0.043 1.286 0.917 0.079 0.146 0.153 0.273 0.106 1.835 0.907 0.222 0.247 0.024 0.171 0.859 1.439 0.113 0.133 2.358 0.012 0.035 0.008 328 chr12 57075823 57085010 + 0 NA intron (NM_006601, intron 1 of 7) AluSp|SINE|Alu 1365 NR_104219 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 6.689 3.647 4.172 1.156 4.269 3.981 5.314 1.744 5.929 3.652 3.252 2.052 2.131 2.506 4.193 2.938 2.063 1.857 1.799 1.448 3.465 3.689 1.727 5.988 5.606 5.341 2.135 2.032 7.343 5.618 5.365 2.942 4.060 4.241 5.203 2.432 2.477 6.727 4.778 2.263 2.875 2.032 625 chr17 48103007 48147400 + 0 NA Intergenic Intergenic 7900 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 5.410 4.803 0.219 2.496 5.139 2.763 5.591 3.357 nan 5.772 4.216 2.971 4.152 3.958 3.559 6.458 2.122 2.112 0.266 0.044 4.215 4.610 0.675 0.273 8.235 8.018 3.198 3.259 7.385 3.903 6.284 2.346 2.598 5.070 2.859 1.451 1.381 3.017 3.330 3.779 3.952 3.204 370 chr13 24072409 24087383 + 0 NA Intergenic Intergenic 36245 NR_038995 100506697 Hs.50118 NR_038995 ENSG00000232977 LINC00327 NCRNA00327 long intergenic non-protein coding RNA 327 ncRNA 0.158 0.032 0.017 0.013 0.108 0.047 0.068 0.021 0.304 0.065 0.099 0.010 0.016 0.037 0.058 0.088 0.013 1.378 0.080 2.118 0.047 0.021 0.139 0.243 0.062 0.073 0.084 0.034 0.173 0.097 0.027 0.063 0.071 0.077 0.099 0.008 0.142 0.800 0.523 0.167 8.249 10.252 1130 chr6 35451502 35467142 + 0 NA intron (NM_003214, intron 1 of 12) intron (NM_003214, intron 1 of 12) 5539 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding 2.907 1.929 2.760 0.765 3.113 0.345 2.308 0.437 9.673 4.786 2.420 1.479 0.364 1.138 3.081 3.682 2.003 1.104 0.249 0.430 0.566 0.390 0.734 0.438 0.562 1.630 0.951 1.600 0.602 1.072 1.715 0.582 2.401 5.530 0.397 1.622 1.752 2.077 0.734 0.510 0.516 0.228 956 chr3 124702539 124707257 + 0 NA intron (NM_020733, intron 14 of 16) AluSz|SINE|Alu -51303 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 0.093 1.619 0.052 0.799 1.525 0.132 1.383 1.925 0.419 0.160 0.149 0.308 0.527 2.314 0.492 3.505 0.122 1.347 0.041 1.453 1.162 0.125 2.043 6.730 9.750 3.270 1.089 5.420 0.535 1.355 0.033 0.627 0.658 0.262 0.548 0.298 0.653 1.575 1.096 4.791 4.622 921 chr22 38558466 38590948 + 0 NA intron (NM_001199562, intron 1 of 15) AluSz|SINE|Alu 3054 NM_003560 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 1.486 0.714 0.791 0.333 0.690 0.671 0.553 0.368 4.310 1.078 0.849 0.244 0.319 0.349 1.710 0.658 0.620 0.749 0.385 0.214 0.419 0.250 0.448 0.442 1.870 0.857 0.392 0.391 0.591 1.243 0.958 0.560 0.957 1.181 0.872 0.299 0.958 0.987 0.806 0.286 0.262 0.171 1303 chr9 94181163 94196724 + 0 NA Intergenic Intergenic -2035 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 0.939 1.875 0.210 0.974 1.917 0.781 2.651 0.622 4.274 2.547 0.931 1.232 0.614 1.255 1.014 2.210 0.812 1.196 0.071 0.071 1.674 0.865 0.948 0.393 2.818 0.533 0.449 0.478 1.471 1.397 1.543 1.169 1.363 2.180 1.395 0.512 0.587 1.097 1.149 0.499 0.177 0.111 1168 chr6 138148497 138154696 + 0 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -36729 NM_006290 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 0.127 0.969 0.050 2.545 5.614 0.133 4.608 3.209 1.596 0.418 0.665 0.930 1.478 5.793 1.977 2.787 0.356 1.928 0.032 0.112 2.321 2.014 0.023 0.851 1.771 0.306 0.206 3.710 0.418 0.056 0.108 0.013 0.443 2.174 0.051 0.577 0.147 0.356 0.946 0.593 0.102 0.032 458 chr15 71144397 71167758 + 0 NA intron (NM_001284357, intron 1 of 16) LTR88b|LTR|Gypsy? -9473 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 0.491 0.822 0.080 0.170 0.180 0.205 0.099 0.412 1.076 0.786 0.225 0.594 0.793 0.079 0.264 0.701 0.110 3.613 0.039 0.220 0.466 0.183 0.278 0.385 0.493 0.270 0.230 0.165 1.892 0.911 1.489 0.243 0.259 0.315 0.178 0.105 0.162 0.545 0.822 0.711 0.363 0.225 171 chr10 74435135 74455408 + 0 NA Intergenic Intergenic -6618 NM_138357 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 2.472 1.191 0.997 0.560 1.773 0.183 2.399 1.084 3.330 1.768 0.866 0.535 0.378 1.428 1.606 2.243 0.792 1.455 0.538 0.207 2.800 2.440 0.272 2.066 0.677 0.450 0.387 1.426 0.562 4.188 0.564 0.728 2.040 2.783 3.521 1.668 1.113 0.470 1.548 0.369 0.176 0.105 479 chr16 1121481 1142345 + 0 NA TTS (NM_001172560) TTS (NM_001172560) 3132 NM_001053 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 0.104 0.100 0.003 0.073 0.086 0.024 0.052 5.945 1.270 0.087 0.238 0.096 0.052 0.032 0.133 0.009 0.080 2.421 0.020 1.227 1.299 0.053 0.844 0.096 0.142 0.067 0.121 0.124 2.919 0.075 0.980 0.200 0.200 0.093 0.135 0.060 0.167 0.205 0.022 0.083 0.044 68 chr1 150846125 150853060 + 0 NA promoter-TSS (NM_178427) promoter-TSS (NM_178427) -348 NM_178427 405 Hs.632446 NM_001668 ENSG00000143437 ARNT HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 aryl hydrocarbon receptor nuclear translocator protein-coding 1.311 2.406 0.872 0.879 1.697 2.030 1.151 0.488 11.804 8.749 1.337 0.861 1.694 1.124 1.225 1.359 0.878 1.679 0.805 1.497 1.742 1.479 1.766 2.200 2.015 1.836 1.046 0.367 1.380 2.291 2.451 4.562 3.545 1.897 1.325 1.008 1.768 3.217 2.054 0.587 0.975 0.682 222 chr11 63320755 63343160 + 0 NA Intergenic Intergenic -1102 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 HRASLS2 PLA1/2-2 HRAS like suppressor 2 protein-coding 1.010 0.686 0.924 0.279 0.322 0.085 0.422 0.784 1.023 0.294 1.087 0.654 0.161 0.689 1.503 1.183 0.269 1.211 0.059 0.019 2.263 1.694 0.149 1.138 0.321 0.129 0.118 0.601 1.030 2.036 0.096 0.014 1.201 0.762 0.256 0.802 2.126 0.083 0.265 0.369 0.019 0.009 686 chr19 3357779 3370869 + 0 NA intron (NM_205843, intron 1 of 10) MIR|SINE|MIR -2241 NM_001245004 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 1.058 3.415 0.564 0.695 2.007 4.875 2.457 0.267 3.693 1.181 1.171 0.411 1.084 2.156 0.906 2.050 0.789 2.005 0.749 2.638 2.279 2.874 4.692 4.951 5.660 2.772 1.322 0.128 2.118 4.295 5.553 2.578 1.630 1.780 2.371 1.153 1.366 10.294 2.257 1.581 1.826 1.093 524 chr16 67200965 67213299 + 0 NA promoter-TSS (NM_001185057) promoter-TSS (NM_001185057) -624 NM_001276311 8996 Hs.513667 NM_003946 ENSG00000140939 NOL3 ARC|FCM|MYP|NOP|NOP30 nucleolar protein 3 protein-coding 1.072 1.960 0.501 1.539 3.721 6.228 1.761 0.418 2.897 1.418 1.922 1.471 1.078 1.600 2.014 1.746 1.802 2.370 3.712 0.113 2.574 2.950 1.792 5.745 1.891 1.726 0.949 0.810 2.446 3.165 1.851 2.068 3.610 3.399 2.653 1.346 1.252 2.577 1.061 1.498 0.747 0.322 291 chr12 8177920 8187601 + 0 NA Intergenic L1ME4a|LINE|L1 -2599 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 2.152 1.376 1.145 0.507 1.760 2.142 2.618 0.691 3.813 2.739 2.309 0.492 0.891 1.471 3.029 1.349 0.932 1.482 0.823 1.118 2.061 2.105 1.165 1.659 2.377 1.937 0.978 0.855 4.332 3.345 5.023 1.115 1.375 2.352 2.258 0.342 1.208 6.883 1.343 0.747 2.243 1.451 531 chr16 69562228 69568353 + 0 NA Intergenic MER33|DNA|hAT-Charlie 34481 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 2.152 1.928 0.193 0.960 2.007 7.538 1.169 0.827 0.960 0.738 0.595 2.187 1.291 1.106 2.293 3.116 2.133 2.794 0.075 1.800 2.912 1.988 2.607 2.387 5.558 8.902 3.667 1.774 4.791 4.074 2.835 1.663 2.771 3.112 4.810 0.640 0.610 3.852 2.393 1.629 1.927 1.262 198 chr11 3114643 3118707 + 0 NA intron (NM_145638, intron 13 of 20) L1MC5|LINE|L1 -37994 NM_001751 833 Hs.274873 NM_001751 ENSG00000110619 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 0.106 1.615 0.015 0.769 0.886 0.077 0.085 0.918 0.229 0.079 0.120 0.071 0.958 0.456 0.190 1.824 0.745 0.103 0.379 0.215 0.074 0.057 4.185 9.701 3.397 0.093 2.620 0.100 0.245 0.096 0.099 0.159 0.160 0.031 0.062 5.634 0.272 0.958 0.099 0.076 996 chr4 38309619 38339801 + 0 NA Intergenic Intergenic 200091 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 0.787 0.160 0.475 1.175 1.731 0.125 0.463 0.435 4.804 1.133 0.476 1.503 0.250 1.135 0.797 2.035 0.330 0.457 0.208 0.037 0.298 0.167 0.117 0.650 1.041 0.434 0.280 0.317 1.504 0.634 0.220 1.031 0.930 0.828 0.422 0.711 0.901 0.220 0.611 0.721 0.021 0.022 930 chr3 10010920 10029843 + 0 NA intron (NM_018447, intron 2 of 8) AluSg|SINE|Alu -8196 NR_103821 442075 Hs.690469 NM_001013730 EMC3-AS1 - EMC3 antisense RNA 1 ncRNA 0.654 1.372 0.229 0.603 1.187 3.149 1.094 0.540 1.214 0.689 0.968 0.774 0.797 0.899 1.001 2.486 0.521 2.628 0.106 0.132 0.975 0.755 0.188 3.558 0.677 1.290 0.625 0.433 0.747 0.788 0.741 0.691 1.389 1.099 2.894 0.934 0.455 0.668 1.799 1.197 0.435 0.311 382 chr13 74165533 74198273 + 0 NA Intergenic Intergenic 43522 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.293 0.105 0.029 0.059 0.127 0.027 0.097 0.107 7.177 2.183 0.674 0.188 0.057 0.383 0.206 0.196 0.044 0.083 0.059 0.019 0.253 0.113 0.023 0.067 0.189 0.031 0.026 0.117 0.162 0.463 0.035 0.173 0.687 0.061 0.110 0.414 0.573 0.027 0.080 0.063 0.004 0.008 281 chr12 2984887 2987954 + 0 NA promoter-TSS (NM_001252499) promoter-TSS (NM_001252499) 55 NR_027365 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 6.770 9.232 2.249 1.851 3.999 7.208 8.118 2.297 12.567 5.004 5.576 1.841 2.576 3.718 5.584 4.273 2.521 4.342 2.383 2.055 4.442 6.435 2.937 6.305 7.910 7.530 2.842 4.205 10.961 8.120 11.598 2.921 3.325 6.842 5.812 2.670 2.306 20.119 2.903 2.489 5.125 2.881 1187 chr7 17336308 17366532 + 0 NA intron (NM_001621, intron 2 of 10) intron (NM_001621, intron 2 of 10) 13144 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 1.977 0.875 0.108 0.220 0.577 2.902 1.702 0.265 3.675 2.907 3.299 0.460 0.726 1.001 1.215 0.427 0.738 0.693 0.561 0.014 1.405 0.933 0.095 1.102 0.749 0.172 0.106 0.630 0.446 0.738 0.344 1.527 1.944 0.625 0.777 0.603 1.166 0.752 1.283 0.849 0.063 0.024 347 chr12 66329129 66344636 + 0 NA intron (NM_001300918, intron 3 of 4) L2c|LINE|L2 -60935 NM_001292023 100129940 Hs.685856 NM_001292023 ENSG00000197301 LOC100129940 - uncharacterized LOC100129940 protein-coding 0.467 0.734 0.076 0.593 0.933 0.717 0.781 0.510 1.580 0.465 0.408 0.263 0.475 1.112 0.279 0.820 0.025 4.015 0.156 1.775 1.326 0.551 0.014 0.114 0.243 0.152 0.110 0.639 0.670 0.546 1.562 0.357 0.124 0.414 6.993 0.149 0.080 0.165 0.779 0.224 1.630 1.701 898 chr21 40328788 40340104 + 0 NA Intergenic L2a|LINE|L2 15254 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 0.445 0.188 0.057 0.185 0.224 0.045 0.341 0.028 2.420 0.537 1.353 0.272 0.105 0.339 0.297 0.094 0.051 0.215 2.715 0.044 0.914 0.569 0.046 0.083 0.136 0.048 0.006 0.198 0.125 0.440 0.045 3.079 1.466 0.305 0.025 0.442 0.347 0.078 0.376 0.013 0.008 0.004 515 chr16 51668248 51675661 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -124476 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 0.077 0.168 0.025 0.043 0.127 0.092 0.112 0.035 0.047 0.039 0.127 0.129 0.058 0.038 0.114 0.054 0.019 0.037 0.029 0.020 0.174 4.162 0.024 0.016 0.063 0.070 0.822 0.039 5.936 1.162 0.048 0.050 0.132 0.078 0.647 0.309 0.382 0.023 514 chr16 51583292 51593416 + 0 NA Intergenic MIRb|SINE|MIR -208076 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 0.103 0.329 0.019 0.032 0.125 0.048 0.011 0.618 0.112 0.056 0.072 0.116 0.022 0.028 0.146 0.009 0.617 0.079 0.014 0.280 0.085 0.014 1.514 0.762 0.018 0.039 0.060 0.100 1.457 0.036 4.296 1.430 0.042 0.018 0.255 0.154 0.372 0.243 0.196 0.028 0.015 156 chr10 8089895 8104277 + 0 NA intron (NM_001002295, intron 1 of 5) CpG-2567 419 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 0.930 0.529 0.013 0.158 0.389 0.315 0.040 0.058 0.251 0.207 0.048 0.020 0.090 0.122 2.124 0.049 1.252 0.682 0.048 0.039 0.196 0.086 0.243 0.060 0.372 0.141 0.065 0.054 0.167 1.330 0.566 0.159 0.167 0.237 0.052 0.017 2.298 9.483 0.060 0.109 0.235 0.159 1171 chr7 1541672 1586702 + 0 NA Intergenic AluSx1|SINE|Alu -6181 NM_002360 7975 Hs.520612 NM_002360 ENSG00000198517 MAFK NFE2U|P18 MAF bZIP transcription factor K protein-coding 2.987 1.831 0.533 0.442 1.042 3.993 2.366 0.562 nan 2.227 2.812 0.695 0.620 0.696 1.068 1.164 1.056 4.176 0.713 0.203 1.518 1.271 1.608 6.140 3.511 1.053 0.518 0.938 0.832 5.984 2.459 2.375 3.661 4.052 3.092 1.560 3.745 5.653 1.052 0.988 0.547 0.272 822 chr2 234144379 234163573 + 0 NA Intergenic MIR|SINE|MIR -6241 NM_001190267 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 1.166 0.851 0.049 1.497 2.109 0.593 2.243 1.690 3.034 1.066 1.088 2.319 1.452 1.585 3.322 7.157 0.425 0.309 0.058 0.151 2.458 1.836 0.256 0.490 1.559 0.367 0.231 1.687 0.395 1.041 0.445 0.205 1.165 1.906 1.747 0.345 0.696 0.892 1.324 2.196 0.192 0.152 225 chr11 63632690 63647342 + 0 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) -15971 NM_017490 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 0.300 0.516 3.798 0.355 0.864 0.117 0.291 0.238 4.327 0.939 1.463 0.214 0.242 0.319 1.202 0.695 0.716 0.180 0.225 0.095 0.756 0.480 0.234 1.082 0.282 0.112 0.075 0.354 0.237 1.296 0.287 0.189 0.491 0.885 0.714 0.395 0.950 0.186 0.446 0.492 0.016 0.014 722 chr19 42225040 42308621 + 0 NA intron (NM_002483, intron 4 of 5) MIRc|SINE|MIR 7402 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 0.094 0.103 0.311 0.436 0.604 0.039 1.172 0.406 nan 5.485 7.131 0.429 0.095 0.949 1.979 1.245 0.039 0.074 0.596 0.012 0.886 0.447 0.058 0.049 0.134 0.056 0.028 1.064 0.133 0.348 0.105 1.163 1.248 0.976 0.830 1.514 3.301 0.080 0.128 0.054 0.023 0.009 1106 chr6 15244599 15250253 + 0 NA TTS (NR_120502) TTS (NR_120502) 1220 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 3.288 4.072 1.899 0.839 4.295 2.314 2.492 1.227 4.871 4.428 4.700 1.728 1.550 1.159 5.686 1.504 1.910 2.653 1.020 3.851 2.327 2.393 1.279 1.825 5.860 2.898 1.421 1.298 2.495 3.625 5.504 2.117 3.218 6.720 3.755 1.421 2.895 6.453 2.398 2.712 1.375 1.353 451 chr15 66990900 67002022 + 0 NA intron (NR_027654, intron 1 of 4) CpG-8006 1787 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 2.144 2.455 1.794 0.471 1.806 4.956 1.393 0.645 2.573 0.904 1.733 0.988 0.564 0.867 1.030 1.212 1.351 1.888 0.198 4.178 1.185 1.075 2.427 2.765 2.722 0.418 0.312 0.462 1.512 7.127 2.335 2.879 4.636 2.090 0.837 1.399 1.929 3.912 0.869 1.089 0.430 0.284 244 chr11 67230166 67251367 + 0 NA Intergenic AluSx1|SINE|Alu -4018 NR_073413 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding 1.591 1.482 0.577 0.636 1.858 1.849 1.366 0.975 5.627 2.769 2.108 1.095 0.539 1.450 2.488 1.677 0.581 2.524 1.191 0.312 0.989 0.759 0.696 0.822 3.172 1.065 0.639 1.198 0.998 2.244 1.469 2.111 2.307 2.146 2.033 1.195 1.844 6.060 3.008 0.526 0.266 0.184 410 chr14 38048145 38074154 + 0 NA exon (NM_004496, exon 2 of 2) exon (NM_004496, exon 2 of 2) 3176 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 4.975 2.806 10.567 1.540 5.342 2.670 2.686 2.747 26.331 21.470 8.314 2.300 1.351 3.830 4.264 2.898 0.158 1.956 2.811 2.567 3.898 5.092 0.056 5.189 0.577 0.990 0.417 3.833 0.156 3.412 0.767 3.489 6.356 5.469 8.792 2.742 4.652 0.757 0.118 0.090 0.031 0.016 101 chr1 155188041 155198802 + 0 NA intron (NR_002188, intron 1 of 12) AluJo|SINE|Alu 3904 NR_002188 2630 Hs.719930 NR_002188 ENSG00000160766 GBAP1 GBAP glucosylceramidase beta pseudogene 1 pseudo 1.609 2.130 0.721 1.432 2.969 2.632 2.637 1.446 4.149 1.410 1.711 1.230 1.440 2.375 2.016 1.775 0.802 2.113 1.304 1.403 3.087 2.627 1.056 3.075 1.678 1.389 0.632 1.289 1.512 1.241 1.941 5.834 2.287 2.120 2.230 1.015 1.071 3.526 3.651 1.185 1.515 0.991 1317 chr9 127456772 127461799 + 0 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 3296 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 3.644 0.076 3.323 0.607 1.577 0.101 4.774 1.469 1.276 1.352 1.382 1.087 0.499 0.282 2.769 1.253 1.752 0.330 0.039 0.056 0.082 0.029 1.592 0.155 0.276 7.454 2.604 2.196 0.277 0.227 0.705 0.034 0.081 2.736 0.199 0.115 0.364 0.254 0.219 0.179 0.331 0.152 834 chr20 270254 282519 + 0 NA Intergenic L1M5|LINE|L1 -1818 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 1.609 3.767 0.734 0.433 1.904 1.239 0.847 0.798 4.454 3.312 2.258 1.055 0.480 0.939 1.970 0.560 0.816 1.344 1.344 3.374 1.042 1.274 1.420 2.053 1.899 2.363 1.172 1.179 1.958 3.832 3.798 1.333 2.072 2.296 2.114 1.055 1.870 2.699 1.653 1.396 1.179 0.704 396 chr14 24833987 24851473 + 0 NA intron (NM_001198966, intron 4 of 9) intron (NM_001198966, intron 4 of 9) 4371 NM_001288802 4776 Hs.77810 NM_004554 ENSG00000100968 NFATC4 NF-AT3|NF-ATC4|NFAT3 nuclear factor of activated T-cells 4 protein-coding 0.844 0.267 1.030 0.423 1.272 2.494 1.203 0.703 9.424 3.763 3.606 0.587 0.201 0.469 0.690 1.284 0.251 0.880 0.748 0.278 0.225 0.091 0.333 1.562 0.126 0.186 0.130 1.051 2.337 1.071 1.172 0.623 1.503 1.105 0.101 0.481 0.611 3.097 0.154 0.182 0.705 0.501 1282 chr8 141466675 141475791 + 0 NA Intergenic Intergenic -2555 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 2.956 2.332 1.095 0.709 1.507 2.909 1.521 1.127 6.296 3.070 1.402 1.742 0.971 1.939 1.467 1.795 1.013 1.664 2.662 3.058 0.757 0.773 1.526 2.828 3.349 1.919 0.976 0.403 2.022 3.778 3.962 2.590 2.149 4.048 1.208 0.988 3.113 4.530 0.621 0.713 0.644 0.473 1274 chr8 128217260 128241678 + 0 NA intron (NR_108049, intron 1 of 1) MER20|DNA|hAT-Charlie 2044 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 (non-protein coding) ncRNA 7.049 1.855 0.029 0.373 0.573 4.097 1.904 3.277 1.715 0.550 1.323 1.114 1.664 4.526 3.532 2.864 0.988 0.280 0.797 0.017 1.744 0.949 0.036 0.160 1.586 2.482 1.384 4.477 4.594 2.634 0.070 2.212 13.377 0.237 0.247 2.009 0.890 0.307 7.962 1.093 1.352 1.184 862 chr20 48779220 48790318 + 0 NA Intergenic AluJb|SINE|Alu -4338 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 2.315 1.908 1.075 0.734 1.488 4.333 1.105 0.940 3.003 1.045 1.625 2.061 1.044 0.769 0.852 1.205 2.335 2.509 0.666 1.150 1.314 0.885 0.993 5.399 3.971 0.866 0.552 0.687 5.550 4.357 2.885 1.531 2.013 2.859 3.281 1.121 1.605 6.472 1.338 2.685 1.853 1.317 403 chr14 36957387 37000240 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 4177 NR_138600 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 0.107 0.045 8.451 2.830 7.426 0.022 8.960 3.652 16.524 9.117 11.164 2.289 2.633 7.904 0.051 7.691 0.007 0.041 6.607 0.026 3.367 4.829 0.024 0.061 0.058 0.054 0.058 8.379 0.118 0.101 0.090 0.057 0.059 5.165 10.597 0.038 0.095 0.535 2.725 0.021 0.023 0.006 843 chr20 23329023 23344292 + 0 NA TTS (NR_109884) TTS (NR_109884) 2107 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 0.942 4.211 2.443 0.770 2.001 1.693 1.093 1.138 3.711 3.011 5.602 1.980 1.010 1.641 2.729 1.616 1.892 1.931 1.509 2.446 1.883 2.281 1.552 2.944 2.690 2.218 1.106 1.148 2.634 3.404 2.486 1.986 1.464 3.477 1.862 1.927 2.100 2.384 2.541 1.536 1.552 0.984 850 chr20 35917245 35924828 + 0 NA intron (NM_001003897, intron 1 of 2) L1MC3|LINE|L1 2985 NM_001003897 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 2.825 3.289 0.533 1.778 3.234 2.460 2.079 1.363 nan 1.928 1.708 1.445 1.804 2.044 1.914 2.698 1.086 4.392 0.538 1.006 2.165 1.900 0.903 4.069 2.596 2.568 1.265 1.951 2.818 3.966 3.025 0.809 2.063 5.295 6.307 1.569 1.720 3.724 4.481 3.239 2.240 1.366 1 chr1 931445 938130 + 0 NA exon (NM_021170, exon 4 of 4) exon (NM_021170, exon 4 of 4) 765 NM_001142467 57801 Hs.154029 NM_021170 ENSG00000188290 HES4 bHLHb42 hes family bHLH transcription factor 4 protein-coding 5.539 3.174 2.429 0.795 3.454 2.180 4.477 0.728 nan 3.959 3.644 1.070 0.302 1.446 2.403 1.338 0.744 0.943 1.918 2.690 1.221 1.706 1.806 1.647 3.153 2.539 1.132 1.255 0.555 3.121 5.629 3.611 3.350 9.821 3.382 1.280 2.914 11.094 1.331 1.727 0.896 0.534 1236 chr8 38028717 38036300 + 0 NA intron (NR_045493, intron 1 of 3) AluSx1|SINE|Alu -1598 NM_004874 9530 Hs.194726 NM_004874 ENSG00000156735 BAG4 BAG-4|SODD BCL2 associated athanogene 4 protein-coding 7.453 2.424 1.367 0.450 1.274 1.594 2.939 1.115 2.440 2.000 3.020 1.465 1.117 1.672 1.729 1.876 0.794 1.808 1.205 3.144 2.095 2.311 0.876 1.627 4.687 5.063 2.124 0.602 2.488 3.013 2.335 1.249 1.905 1.247 1.042 1.739 0.903 2.584 1.436 1.078 0.885 0.516 1134 chr6 41543070 41551758 + 0 NA intron (NM_001012426, intron 3 of 16) intron (NM_001012426, intron 3 of 16) -19047 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 0.158 1.997 0.036 1.572 3.053 0.116 0.891 0.851 7.435 3.361 2.833 2.981 1.724 1.112 0.964 7.314 0.957 1.251 0.767 0.144 2.361 2.109 0.127 2.543 0.913 0.466 0.270 1.235 1.228 2.042 0.810 1.596 2.686 2.629 6.143 0.465 0.104 0.460 1.843 1.628 0.862 0.624 1301 chr9 69873802 69891694 + 0 NA Intergenic Intergenic -124964 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 3.071 0.074 0.038 0.827 2.080 0.011 4.032 0.932 0.451 0.301 0.103 0.883 0.571 2.645 0.070 2.862 0.032 0.104 0.039 0.431 1.035 1.143 0.017 0.070 0.294 0.269 0.214 2.338 0.201 0.059 0.466 0.031 0.071 1.007 0.046 0.471 0.042 0.019 1.201 0.653 2.149 2.443 1186 chr7 17157370 17175053 + 0 NA Intergenic Intergenic -172065 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 0.620 0.237 0.084 0.054 0.120 3.831 0.136 0.084 1.907 0.479 0.668 0.083 0.021 0.167 0.372 0.089 0.097 0.312 0.098 0.024 0.248 0.062 0.017 0.679 0.094 0.020 0.036 0.065 0.231 0.617 0.048 0.424 0.424 0.156 0.093 0.180 0.173 0.102 0.130 0.189 0.020 0.023 894 chr21 36584760 36607572 + 0 NA Intergenic MIRc|SINE|MIR -174571 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.739 0.095 2.137 1.162 1.705 0.143 1.100 2.018 1.776 0.869 1.080 1.726 0.536 1.718 2.479 3.358 1.009 0.568 0.040 1.279 0.796 0.243 0.125 0.687 0.087 0.075 1.231 0.575 0.039 0.875 0.456 0.865 2.351 1.433 0.647 0.806 0.105 1.332 0.127 0.641 0.635 847 chr20 32250354 32263560 + 0 NA TTS (NM_001024675) TTS (NM_001024675) 2653 NM_001024675 170487 Hs.592151 NM_001024675 ENSG00000182584 ACTL10 C20orf134|dJ63M2.2 actin like 10 protein-coding 2.946 5.121 0.281 0.961 2.399 4.300 1.717 0.558 nan 3.112 2.614 0.962 1.589 0.843 2.835 1.166 1.423 2.365 1.759 0.848 1.414 1.595 1.759 2.352 1.530 1.520 0.876 0.962 1.257 1.988 3.102 1.840 2.358 2.511 1.920 1.235 2.109 5.092 2.089 1.703 0.515 0.256 144 chr1 234629154 234661678 + 0 NA Intergenic Intergenic 22109 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 1.653 1.110 0.428 0.364 0.730 0.910 1.369 0.851 2.571 0.590 1.678 0.289 0.281 1.717 2.464 0.784 1.089 0.930 0.120 0.205 2.061 1.178 0.268 2.240 0.668 0.137 0.130 0.676 2.035 0.979 0.390 1.647 1.631 0.742 0.584 0.496 0.921 1.448 1.232 0.459 0.142 0.080 103 chr1 155615751 155623696 + 0 NA Intergenic Intergenic 29323 NR_132762 106633810 NR_132762 SCARNA26A - small Cajal body-specific RNA 26A ncRNA 0.742 1.494 1.586 1.784 4.264 1.746 2.060 2.931 5.421 1.399 3.326 3.400 1.731 2.472 1.720 5.643 1.312 1.353 0.163 0.035 3.211 3.010 0.318 4.529 0.953 1.466 0.868 2.652 1.398 1.152 1.008 0.476 1.508 9.392 5.941 0.862 2.034 0.840 2.993 1.343 1.558 0.980 987 chr3 193739438 193913465 + 0 NA Intergenic Intergenic -27480 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 0.941 0.274 0.234 0.313 0.568 0.303 0.838 0.349 nan 1.398 0.759 0.345 0.215 0.363 1.392 0.817 0.365 0.420 0.400 0.179 0.830 0.686 0.193 0.291 0.642 0.450 0.195 0.312 0.408 0.650 0.685 0.863 1.286 1.172 0.438 0.301 0.465 1.067 0.436 0.311 0.180 0.138 1197 chr7 30936693 30955680 + 0 NA Intergenic Intergenic -5123 NM_001329872 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 0.407 0.311 0.016 0.215 0.228 0.067 0.622 0.201 2.648 0.324 1.079 0.580 0.567 0.058 0.365 1.306 0.070 0.480 0.027 0.051 0.790 0.419 0.101 0.124 0.465 0.097 0.050 0.210 0.293 0.250 0.091 0.531 2.407 0.580 0.243 0.369 0.204 0.222 0.689 0.555 0.061 0.021 303 chr12 19998565 20021221 + 0 NA Intergenic Intergenic -157726 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LOC100506393 - uncharacterized LOC100506393 ncRNA 0.139 0.267 0.470 0.223 0.677 0.142 1.344 0.459 1.190 0.307 3.864 0.431 0.115 0.192 0.085 0.496 0.017 1.087 0.056 0.049 0.415 0.170 0.023 1.041 0.102 0.048 0.042 0.054 0.443 0.219 0.118 0.160 0.216 0.396 0.008 0.183 0.051 0.257 0.170 0.111 0.013 0.018 650 chr17 77015647 77038846 + 0 NA intron (NR_049769, intron 1 of 3) AluY|SINE|Alu -3135 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and tumor necrosis factor related protein 1 protein-coding 0.222 3.053 0.019 0.580 0.568 0.844 0.451 0.245 4.171 1.153 0.190 0.164 0.326 1.989 0.448 0.716 0.107 1.348 0.835 0.018 0.915 0.559 0.063 0.328 7.393 0.892 0.398 0.501 1.000 1.757 0.180 0.228 1.698 0.446 0.008 0.301 0.709 4.708 0.606 0.648 0.265 0.129 998 chr4 38662804 38678393 + 0 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -4349 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 3.878 2.486 2.608 1.462 4.112 3.370 2.919 0.704 9.697 5.662 3.862 1.594 0.849 2.048 4.586 2.609 1.437 1.030 2.605 0.959 1.275 1.331 1.236 2.300 4.953 2.640 1.222 1.264 2.689 4.023 3.638 2.916 2.074 4.481 3.329 2.329 3.770 2.288 1.060 0.995 1.219 1.148 247 chr11 71933088 71937221 + 0 NA promoter-TSS (NM_001567) promoter-TSS (NM_001567) -728 NM_001567 3636 Hs.523875 NM_001567 ENSG00000165458 INPPL1 OPSMD|SHIP2 inositol polyphosphate phosphatase like 1 protein-coding 5.647 6.391 1.753 1.097 3.173 5.195 3.582 1.640 10.069 7.097 5.795 1.740 1.910 3.604 5.012 3.054 2.315 3.219 3.346 5.686 3.597 3.861 5.137 3.754 9.126 7.404 4.014 3.008 7.259 7.681 6.188 7.799 7.018 2.988 4.482 2.428 2.789 14.058 2.790 3.452 1.310 0.656 878 chr20 62282027 62291190 + 0 NA Intergenic Intergenic -1645 NR_075070 50861 Hs.639609 NM_015894 ENSG00000197457 STMN3 SCLIP stathmin 3 protein-coding 1.403 4.455 0.211 0.414 1.203 2.929 1.270 0.548 5.693 3.149 1.760 0.641 1.919 1.165 1.317 1.329 0.450 0.638 1.364 0.892 0.937 0.672 1.016 0.751 2.307 1.303 0.698 0.459 1.362 1.342 4.403 0.966 0.553 0.589 1.608 0.506 0.831 4.830 1.261 2.023 1.446 1.288 402 chr14 36945327 36951173 + 0 NA intron (NR_138596, intron 2 of 4) intron (NR_138596, intron 2 of 4) 34740 NR_138600 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 0.199 0.082 0.085 2.207 4.420 0.010 2.960 3.665 9.304 2.379 1.463 2.149 0.080 5.067 0.049 2.120 0.017 0.016 0.051 0.047 0.793 0.683 0.038 0.055 0.094 0.083 0.120 3.755 0.358 0.056 0.061 0.023 4.254 0.192 0.230 0.043 0.029 0.538 0.013 0.552 0.486 285 chr12 6637061 6652817 + 0 NA intron (NM_001256799, intron 1 of 7) intron (NM_001256799, intron 1 of 7) 554 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 3.016 2.712 2.244 0.926 3.000 5.166 3.511 1.392 6.645 3.864 2.995 1.413 1.833 2.508 3.635 2.644 2.268 2.943 1.662 1.273 2.709 3.352 1.565 5.291 4.582 2.337 1.091 2.217 10.148 5.088 6.392 1.948 2.073 3.038 3.004 1.645 1.856 11.161 1.994 1.984 2.536 1.530 183 chr10 115715726 115720630 + 0 NA Intergenic Intergenic -85628 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.850 0.479 6.098 1.325 2.208 0.013 3.755 2.574 8.883 5.117 2.987 2.721 1.546 2.675 0.137 4.947 0.390 0.749 3.592 0.029 3.002 2.768 0.375 0.110 0.233 0.122 0.155 4.572 0.225 0.725 0.335 1.546 5.778 5.617 0.935 1.251 0.165 1.365 0.139 0.106 0.031 51 chr1 68213190 68217683 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 64576 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 4.218 3.219 4.462 2.478 4.338 3.280 4.144 3.179 7.123 2.397 4.614 3.417 1.438 4.452 5.566 5.292 3.416 4.258 0.333 0.062 2.932 3.071 2.242 1.923 2.663 0.471 0.295 9.570 6.958 2.347 0.695 3.670 2.676 6.000 0.642 2.207 5.197 0.696 2.036 2.099 0.346 0.238 561 chr17 7786451 7793647 + 0 NA intron (NM_001005271, intron 1 of 39) intron (NM_001005271, intron 1 of 39) -1343 NM_001330111 84316 Hs.565094 NM_032356 ENSG00000183011 NAA38 LSMD1|PFAAP2 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding 3.595 4.636 5.704 1.944 5.734 4.036 3.977 1.258 11.951 9.151 11.986 3.424 1.392 1.607 4.199 2.904 5.514 3.421 4.950 3.060 1.567 1.627 2.054 10.872 11.458 3.835 1.981 6.295 5.197 10.304 7.275 2.899 4.631 6.477 7.398 4.469 7.410 8.433 5.034 4.556 4.109 2.986 951 chr3 69809874 69822564 + 0 NA intron (NM_006722, intron 1 of 9) intron (NM_006722, intron 1 of 9) 3257 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|MI|WS2|WS2A|bHLHe32 melanogenesis associated transcription factor protein-coding 0.325 0.686 0.186 0.553 0.772 4.947 2.338 2.012 0.709 0.314 0.461 1.179 0.352 2.987 0.962 2.054 1.196 1.087 0.039 0.011 2.504 2.211 1.103 0.909 0.843 0.342 0.228 0.598 0.118 0.363 0.011 0.878 0.768 0.629 3.771 0.087 0.737 0.251 3.202 0.791 0.073 0.024 1086 chr5 157025644 157036443 + 0 NA Intergenic Intergenic -28212 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 3.569 0.596 0.017 1.499 2.419 0.368 0.057 4.487 2.135 1.685 0.665 2.662 5.020 2.591 1.407 4.444 0.065 1.174 0.019 0.698 0.294 0.057 0.738 3.444 1.527 0.848 0.220 5.477 0.143 0.851 0.080 0.535 0.797 2.528 1.052 0.154 0.070 1.612 4.084 4.704 5.499 999 chr4 40311135 40342879 + 0 NA intron (NR_121640, intron 1 of 2) AluSz|SINE|Alu 8505 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 0.165 0.939 0.049 0.714 0.995 0.121 0.461 0.263 5.820 2.201 0.733 1.249 0.296 0.313 0.755 1.146 0.461 1.277 0.304 0.098 1.288 0.912 0.093 3.504 1.225 0.124 0.093 0.376 0.552 0.841 0.393 0.670 0.810 1.315 0.123 0.724 0.890 1.177 0.490 0.191 0.315 0.365 339 chr12 58326870 58338999 + 0 NA Intergenic L1PB4|LINE|L1 -2353 NM_001320410 91419 Hs.61188 NM_033276 ENSG00000166896 ATP23 KUB3|XRCC6BP1 ATP23 metallopeptidase and ATP synthase assembly factor homolog protein-coding 1.237 0.944 0.328 0.390 0.826 0.862 1.055 0.380 1.833 0.929 0.893 0.638 0.565 0.441 0.875 0.441 0.284 1.599 0.437 0.547 0.827 0.620 0.565 0.730 1.130 0.717 0.371 0.223 1.047 1.121 1.899 0.689 0.822 0.841 13.492 0.544 0.557 1.600 0.950 0.497 0.855 0.468 1194 chr7 27129313 27193650 + 0 NA promoter-TSS (NR_122069) promoter-TSS (NR_122069) -57 NR_122069 285943 Hs.714774 NR_122069 HOXA-AS2 HOXA3as HOXA cluster antisense RNA 2 ncRNA 0.711 0.088 0.721 0.958 2.133 2.774 1.091 0.223 2.460 1.461 0.573 0.243 0.395 0.187 2.043 1.985 0.578 1.511 0.260 9.033 1.346 1.165 0.532 2.767 2.280 0.821 0.349 1.482 2.056 2.111 1.235 0.460 0.621 1.597 1.091 1.263 1.243 1.190 0.269 0.280 3.096 3.697 504 chr16 22407249 22419454 + 0 NA intron (NR_136333, intron 2 of 3) intron (NR_136333, intron 2 of 3) 16261 NR_136333 105371130 Hs.639607 NR_136333 MFSD13B - major facilitator superfamily domain containing 13B pseudo 5.447 1.591 0.980 0.281 0.880 0.043 2.599 0.969 0.991 0.592 0.722 0.514 0.068 3.144 0.940 0.719 0.741 1.263 0.057 0.042 1.676 1.031 0.030 0.119 0.128 0.034 0.039 1.502 0.250 0.193 0.058 0.113 0.659 0.309 0.068 0.101 0.054 0.043 0.466 0.361 0.024 0.016 539 chr16 86695462 86703310 + 0 NA Intergenic AluSx4|SINE|Alu 56179 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LOC101928614 - uncharacterized LOC101928614 ncRNA 2.972 2.325 0.016 1.592 1.381 9.325 1.581 0.940 1.309 0.606 0.073 2.622 2.532 2.259 1.220 4.661 0.108 5.699 0.050 5.366 5.118 0.009 1.333 5.773 6.474 2.394 2.498 5.970 2.598 2.708 5.186 1.485 0.515 4.235 1.699 0.558 0.243 1.755 3.265 3.499 3.299 890 chr21 36162597 36189811 + 0 NA intron (NM_001001890, intron 4 of 5) intron (NM_001001890, intron 4 of 5) 58082 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 0.499 1.453 0.256 0.708 1.673 0.590 1.474 0.813 5.765 3.648 0.591 0.978 1.076 1.552 0.935 1.616 0.854 1.098 0.055 0.010 1.520 1.173 0.311 0.762 0.942 0.596 0.200 0.204 2.006 0.643 0.916 1.186 1.951 1.374 0.405 2.073 0.464 0.397 0.597 1.230 0.751 0.656 1043 chr5 40832939 40843582 + 0 NA Intergenic Intergenic -2873 NM_000997 6167 Hs.447582 NM_000997 ENSG00000145592 RPL37 L37 ribosomal protein L37 protein-coding 2.259 1.968 0.629 3.089 6.127 1.916 3.838 2.213 7.731 5.182 4.290 1.934 1.750 2.252 6.643 4.105 1.582 3.163 0.331 1.649 2.590 2.230 0.693 6.232 1.872 3.008 1.633 1.944 1.345 2.235 1.882 4.110 4.674 5.272 2.255 2.873 1.702 4.369 4.282 1.644 1.391 1.125 743 chr19 49456925 49474343 + 0 NA TTS (NM_138764) TTS (NM_138764) -2932 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 2.964 5.174 0.288 0.710 1.824 3.588 1.672 0.950 nan 1.976 1.700 0.748 0.818 1.460 4.025 1.847 0.734 4.191 1.458 1.105 1.748 2.214 0.618 4.839 4.593 2.980 1.154 0.476 3.822 6.515 2.243 3.061 2.266 1.465 1.893 2.601 2.170 2.928 1.491 2.076 2.579 1.806 1080 chr5 139486385 139494999 + 0 NA Intergenic Intergenic -3016 NM_005859 5813 Hs.443121 NM_005859 ENSG00000185129 PURA MRD31|PUR-ALPHA|PUR1|PURALPHA purine rich element binding protein A protein-coding 2.139 2.941 1.517 0.771 2.540 1.575 2.019 1.894 5.254 3.656 2.494 0.839 1.326 2.690 2.733 2.224 1.630 1.063 0.879 1.926 1.880 1.512 2.320 0.738 7.718 6.671 2.521 1.025 2.506 3.224 4.021 2.504 2.140 3.029 7.333 1.934 2.137 3.349 1.403 2.350 3.062 1.759 106 chr1 155928397 155960255 + 0 NA intron (NM_001162384, intron 1 of 21) intron (NM_001162384, intron 1 of 21) 3640 NM_004723 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding 1.085 2.650 0.388 0.923 1.472 3.223 1.549 1.243 5.293 3.209 1.530 1.527 3.179 1.584 1.647 3.268 0.364 2.553 1.046 0.810 2.884 2.751 0.869 3.394 2.468 2.230 0.994 0.605 2.392 2.011 3.033 0.295 0.872 1.584 3.472 1.451 0.415 2.624 2.578 1.783 1.070 0.744 242 chr11 67111532 67160486 + 0 NA intron (NM_001166212, intron 1 of 2) intron (NM_001166212, intron 1 of 2) 5197 NM_013246 23529 Hs.502977 NM_013246 ENSG00000175505 CLCF1 BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 cardiotrophin-like cytokine factor 1 protein-coding 2.091 2.977 0.155 1.240 2.615 2.404 2.368 1.830 6.729 3.482 2.269 2.428 1.146 3.240 3.181 3.984 0.901 5.203 0.687 0.467 2.413 2.832 1.069 2.958 8.139 1.459 0.711 2.334 3.809 6.558 2.341 3.654 3.543 2.257 3.719 1.900 3.608 5.768 5.201 2.109 1.620 1.154 757 chr2 10146194 10157265 + 0 NA Intergenic Intergenic 31799 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 0.045 0.126 0.270 0.207 1.392 0.039 0.088 0.028 1.462 0.305 0.123 0.079 0.011 0.099 0.122 0.204 0.052 0.133 0.009 0.078 0.106 0.078 0.075 0.071 0.169 0.033 0.035 0.107 0.160 0.178 0.121 0.085 0.121 5.024 0.058 0.233 0.389 0.197 0.071 0.021 0.021 0.018 936 chr3 12457870 12472817 + 0 NA intron (NM_138712, intron 7 of 7) intron (NM_138712, intron 7 of 7) -60588 NR_135607 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 0.150 0.370 0.045 0.050 0.078 0.033 0.085 0.025 0.745 0.129 0.071 0.108 0.039 0.022 0.519 0.219 0.013 3.953 0.027 0.009 0.171 0.092 0.034 0.553 0.099 0.145 0.083 0.026 0.140 0.328 0.066 0.037 0.107 0.081 0.053 0.073 0.360 0.050 0.260 0.437 0.192 0.438 371 chr13 24141138 24156391 + 0 NA intron (NM_001204459, intron 1 of 7) intron (NM_001204459, intron 1 of 7) 4255 NM_001204459 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 0.550 0.092 0.004 0.113 0.228 0.120 0.071 0.014 0.750 0.511 0.268 0.018 0.085 0.057 0.139 0.090 0.316 0.100 2.542 0.042 0.028 0.070 1.124 0.078 0.127 0.127 0.086 0.203 0.323 0.163 0.091 0.143 0.307 0.324 0.071 0.200 1.321 0.088 0.149 5.771 8.744 308 chr12 27855625 27865130 + 0 NA Intergenic Intergenic -3329 NM_021821 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding 1.351 1.822 0.267 0.852 2.031 1.023 1.302 0.445 2.403 1.565 1.591 0.720 3.940 0.932 1.001 1.387 0.506 1.678 0.400 0.452 0.943 0.863 0.297 1.009 0.823 0.777 0.386 0.706 1.914 1.416 2.032 0.681 0.740 1.804 1.517 0.668 0.760 2.503 0.665 1.741 0.442 0.309 830 chr2 241497546 241510032 + 0 NA TTS (NM_001033575) TTS (NM_001033575) -3262 NM_001308375 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 2.800 3.714 0.621 1.532 4.357 2.312 5.194 1.285 11.443 7.283 5.377 1.450 1.541 2.664 5.273 3.567 1.390 1.748 1.881 0.848 2.156 2.627 1.824 4.373 3.418 1.964 1.110 2.262 0.851 5.552 3.715 2.136 5.182 4.312 4.389 1.969 4.197 5.240 1.513 2.565 1.453 0.938 1283 chr8 141520082 141523114 + 0 NA promoter-TSS (NR_040712) promoter-TSS (NR_040712) 201 NM_017444 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 9.877 9.636 4.030 2.050 6.941 9.645 9.071 4.336 16.080 11.473 5.041 5.324 3.273 5.516 6.316 7.865 4.217 4.020 5.935 9.069 3.897 6.403 5.943 4.520 10.564 10.281 4.517 2.152 7.699 12.058 12.160 4.562 6.041 12.261 5.710 3.499 6.780 14.118 3.592 3.327 3.924 2.698 1288 chr8 145132251 145138831 + 0 NA TTS (NR_106906) TTS (NR_106906) 764 NR_106906 102465510 NR_106906 ENSG00000178896 MIR6847 hsa-mir-6847 microRNA 6847 ncRNA 5.904 5.099 0.780 1.228 4.530 3.155 4.320 1.699 6.107 5.390 2.667 2.750 1.802 2.743 6.154 3.626 2.407 2.118 1.815 3.917 2.045 2.371 2.411 2.891 4.063 5.122 2.967 1.060 4.330 4.327 5.885 2.298 2.602 3.751 2.038 1.457 2.753 7.312 1.584 1.801 2.430 1.542 683 chr19 1846823 1865963 + 0 NA intron (NM_031918, intron 1 of 1) intron (NM_031918, intron 1 of 1) 7171 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 2.049 2.934 0.408 0.982 3.038 2.419 1.898 0.396 4.806 2.469 1.610 0.704 0.474 1.889 1.238 1.566 0.473 1.105 1.695 1.965 1.371 1.910 2.696 2.105 3.866 2.397 1.042 0.806 2.032 3.629 5.483 1.361 1.379 3.985 2.732 1.262 1.170 7.033 2.590 0.941 2.461 1.412 610 chr17 41735897 41755894 + 0 NA Intergenic AluY|SINE|Alu -6633 NM_001040002 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 0.179 0.286 0.393 0.104 0.286 0.058 0.094 0.164 nan 0.515 0.610 0.044 0.088 0.038 0.544 0.314 0.646 0.225 0.085 0.049 0.370 0.183 0.254 0.202 1.614 0.075 0.094 0.102 0.510 0.433 0.111 0.063 0.169 0.289 0.071 0.139 2.483 3.617 0.241 0.119 0.040 0.030 1070 chr5 132164789 132178240 + 0 NA Intergenic L1MC4a|LINE|L1 -4924 NM_001172700 134549 Hs.519574 NM_133456 ENSG00000164403 SHROOM1 APXL2 shroom family member 1 protein-coding 0.475 0.733 0.060 0.239 0.492 0.349 0.602 0.345 1.871 0.647 1.398 0.358 0.158 0.754 2.353 0.492 0.424 0.405 0.260 0.143 3.057 3.033 0.421 0.423 0.569 0.488 0.372 0.232 0.274 1.230 0.865 0.378 3.712 0.598 0.694 1.238 0.297 0.928 0.398 0.084 0.188 0.136 764 chr2 25695742 25706457 + 0 NA intron (NM_001256308, intron 9 of 17) MLT1J-int|LTR|ERVL-MaLR -135640 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 0.078 0.255 3.541 0.038 0.130 0.029 0.102 0.010 0.815 0.180 0.398 0.156 0.044 0.133 0.051 0.712 0.430 0.019 0.013 0.163 0.111 0.034 0.120 0.199 0.017 0.106 0.158 0.137 0.052 0.051 0.119 0.194 0.069 0.069 0.284 0.060 0.051 0.057 0.086 0.009 948 chr3 62569260 62577276 + 0 NA intron (NM_183394, intron 7 of 27) intron (NM_183394, intron 7 of 27) -214078 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 0.197 0.301 0.062 0.667 0.650 0.024 0.236 3.785 0.732 0.184 0.101 1.433 0.765 0.533 0.072 2.487 0.024 0.116 0.013 0.341 0.126 0.080 0.023 0.112 0.156 0.276 9.073 0.051 0.115 0.041 0.620 0.276 0.031 0.051 0.247 1.224 0.366 0.397 14 chr1 8848302 8851917 + 0 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 27590 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 0.338 0.048 9.242 0.205 0.082 0.037 0.028 nan 0.845 2.191 0.446 0.061 0.187 0.257 1.448 0.205 0.137 0.038 0.038 0.039 0.034 0.105 0.153 0.043 0.127 0.196 0.158 0.100 0.141 1.756 0.177 0.068 2.312 0.080 0.131 0.066 545 chr16 88867782 88880431 + 0 NA intron (NM_030928, intron 9 of 9) intron (NM_030928, intron 9 of 9) 3920 NM_030928 81620 Hs.122908 NM_030928 ENSG00000167513 CDT1 DUP|RIS2 chromatin licensing and DNA replication factor 1 protein-coding 2.413 4.618 0.373 1.175 3.942 5.925 3.684 0.635 3.213 1.478 1.866 1.318 1.093 1.351 2.786 1.983 1.024 2.330 1.794 1.656 2.193 2.781 2.252 2.764 4.507 4.964 2.535 1.247 1.588 2.817 5.699 2.189 2.347 4.323 3.670 0.928 1.335 5.597 2.367 1.401 1.603 0.813 852 chr20 42565122 42594211 + 0 NA intron (NM_001098798, intron 1 of 7) intron (NM_001098798, intron 1 of 7) 5130 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 0.295 1.394 0.030 0.645 0.878 1.582 0.736 0.311 1.916 0.753 0.732 1.100 2.928 0.462 3.028 2.298 0.394 3.167 0.326 0.048 1.500 1.113 0.036 1.280 1.845 0.315 0.183 0.295 4.676 0.718 0.353 0.633 1.616 0.762 7.190 1.166 0.993 1.408 2.012 5.206 0.883 0.859 600 chr17 40471646 40491365 + 0 NA intron (NM_003150, intron 13 of 23) intron (NM_003150, intron 13 of 23) 41431 NM_001288720 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 0.259 0.672 0.296 1.269 2.232 7.843 0.554 0.957 nan 0.078 0.247 0.101 1.241 1.522 1.372 1.816 0.623 0.127 0.044 0.098 1.587 1.480 0.653 0.394 6.949 0.828 0.422 0.385 0.906 1.305 0.650 0.140 0.249 1.086 0.950 0.087 2.672 3.393 1.219 0.568 2.500 2.039 342 chr12 65990048 66009358 + 0 NA intron (NR_120434, intron 2 of 4) MIR|SINE|MIR 36449 NR_120434 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 1.963 1.076 0.623 0.490 0.643 2.462 1.268 3.109 3.163 1.692 1.794 1.526 2.355 1.683 1.209 2.480 0.040 5.266 0.036 0.771 0.373 0.169 0.019 0.433 2.145 1.044 0.484 0.740 4.005 0.118 1.461 0.051 0.681 0.386 2.706 0.242 0.626 0.819 0.489 1.405 0.867 0.748 405 chr14 37215248 37258954 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 110328 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 0.237 0.067 1.468 0.403 0.913 0.027 0.554 0.326 13.151 3.066 0.907 0.933 0.038 0.160 0.185 0.304 0.054 0.142 0.230 0.045 0.151 0.034 0.012 0.204 0.065 0.028 0.014 0.627 0.160 0.112 0.054 0.034 0.288 0.761 0.085 0.435 0.398 0.048 0.123 0.016 0.017 0.011 746 chr19 50140719 50146685 + 0 NA promoter-TSS (NM_006270) promoter-TSS (NM_006270) -302 NM_006270 6237 Hs.515536 NM_006270 ENSG00000126458 RRAS - related RAS viral (r-ras) oncogene homolog protein-coding 7.921 9.421 2.609 2.185 5.547 8.360 7.236 2.858 8.737 6.698 6.467 3.335 2.327 3.931 6.824 4.057 4.816 5.729 2.296 2.509 2.594 4.208 2.056 5.735 14.573 6.987 2.484 3.176 5.262 9.622 5.532 4.133 3.150 6.988 2.232 4.423 6.392 8.265 4.058 5.451 5.048 4.026 320 chr12 53757097 53784907 + 0 NA Intergenic Intergenic -2977 NM_138473 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 1.178 1.816 2.865 0.981 2.232 1.786 1.735 1.259 4.419 1.886 1.889 0.746 0.692 1.278 3.269 2.699 0.753 3.079 0.676 1.052 2.459 2.328 1.137 3.280 1.925 1.677 0.767 1.802 2.350 4.299 3.509 1.380 2.651 1.999 1.646 1.309 2.327 2.447 2.378 1.033 0.628 0.496 827 chr2 238598151 238615422 + 0 NA intron (NM_001137551, intron 1 of 11) intron (NM_001137551, intron 1 of 11) 5979 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 2.359 2.083 0.054 1.252 2.656 0.401 1.578 0.866 2.053 1.123 0.671 1.081 1.106 1.664 2.352 3.118 0.453 1.914 0.654 0.229 2.068 1.810 0.943 1.836 3.481 1.179 0.632 0.676 0.857 1.862 1.921 0.744 1.717 3.796 4.210 0.610 0.800 3.346 1.582 2.689 1.846 1.321 329 chr12 57478155 57489256 + 0 NA intron (NM_001330305, intron 1 of 5) intron (NM_001330305, intron 1 of 5) 1028 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 3.687 3.500 5.834 0.855 2.140 3.178 3.815 2.237 5.274 2.941 3.227 1.291 1.423 2.595 1.519 1.520 1.506 0.808 0.532 5.905 1.849 2.605 3.951 3.225 4.184 2.080 0.977 1.866 4.028 4.488 4.430 1.906 2.988 3.301 2.865 1.077 2.090 8.317 1.922 1.521 1.857 1.110 796 chr2 114081509 114094917 + 0 NA Intergenic Intergenic -51715 NM_013953 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 0.736 2.303 0.018 0.821 1.358 0.308 4.155 1.287 4.171 1.783 1.874 2.182 1.012 2.168 0.842 3.317 0.430 0.380 0.023 0.177 4.325 4.108 0.257 0.756 1.380 0.233 0.204 1.153 1.609 1.673 0.396 0.495 1.125 1.089 0.812 0.338 0.067 0.917 1.857 2.843 0.369 0.267 143 chr1 228726604 228785169 + 0 NA promoter-TSS (NR_106988).6 promoter-TSS (NR_106988).6 -828 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 1.455 0.757 3.331 1.106 2.430 0.822 1.478 0.779 4.064 1.867 0.601 1.124 0.443 0.627 0.401 3.065 2.210 1.695 0.891 5.429 1.683 3.121 1.269 3.477 3.815 4.587 2.986 0.331 1.216 4.375 4.971 1.026 1.460 1.972 2.094 1.211 1.246 5.043 6.996 1.468 0.599 0.471 365 chr12 125049031 125078131 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -11571 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 0.762 0.435 0.291 0.613 0.952 0.353 0.426 0.297 4.012 1.360 0.714 0.594 0.288 0.319 0.738 1.140 0.505 0.698 0.440 0.599 0.474 0.395 0.501 0.633 0.684 0.583 0.374 0.293 1.545 1.642 1.617 0.253 0.473 0.882 0.483 1.089 0.509 1.593 0.220 0.385 0.315 0.216 212 chr11 47205714 47217172 + 0 NA Intergenic AluSq|SINE|Alu -3433 NM_016223 29763 Hs.334639 NM_016223 ENSG00000165912 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 0.934 1.135 1.893 0.165 0.842 2.044 1.312 0.919 3.246 1.358 4.375 0.610 0.303 1.099 5.936 1.490 1.650 0.587 0.070 1.274 0.652 0.503 1.475 1.527 1.131 0.944 0.701 0.502 0.417 3.180 1.823 1.589 2.047 1.378 4.611 1.399 3.079 3.574 0.690 0.781 0.437 0.385 1312 chr9 113672787 113690304 + 0 NA intron (NM_057159, intron 4 of 4) MLT1E1|LTR|ERVL-MaLR 118820 NM_057159 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 0.169 0.595 0.014 0.145 0.552 0.404 0.791 0.513 nan 1.419 1.773 0.929 0.154 1.187 0.720 2.728 0.072 1.353 0.035 0.379 2.380 1.809 0.219 1.498 0.237 0.234 0.129 0.110 0.649 1.753 0.131 0.193 3.217 0.138 0.047 1.837 0.151 0.071 0.355 0.874 0.033 0.011 1264 chr8 102500264 102519747 + 0 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 5337 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 2.940 0.200 3.047 1.014 2.924 0.082 2.011 1.360 8.454 5.472 3.318 2.009 0.387 1.678 4.900 3.344 3.146 1.256 0.067 0.036 0.819 0.337 0.110 2.467 0.123 0.071 0.064 1.674 0.493 0.571 0.073 0.345 3.602 3.452 0.157 1.822 2.805 0.512 0.520 0.174 0.020 0.008 1162 chr6 129952057 130014089 + 0 NA intron (NM_033515, intron 1 of 14) intron (NM_033515, intron 1 of 14) 48297 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 1.630 0.842 0.039 0.208 0.471 3.605 0.397 0.426 1.380 0.557 0.354 0.321 0.535 0.731 0.653 0.701 0.193 3.032 0.029 0.013 0.948 0.514 0.019 2.128 0.428 0.667 0.394 0.498 0.495 0.934 0.593 0.513 0.223 0.283 0.917 0.310 0.040 0.115 0.806 0.970 1.821 2.258 1266 chr8 103627597 103630900 + 0 NA Intergenic MER58A|DNA|hAT-Charlie 36944 NM_001032282 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 0.022 0.266 8.627 0.114 0.544 0.096 0.063 0.130 2.755 0.654 1.413 0.388 0.035 0.295 3.228 0.094 0.288 0.942 0.118 1.523 1.051 0.046 0.383 0.057 0.091 0.048 0.602 0.241 2.953 0.133 0.308 3.564 1.496 0.027 0.223 1.577 0.035 0.471 0.091 0.031 0.015 1286 chr8 145001647 145032482 + 0 NA promoter-TSS (NM_201383) promoter-TSS (NM_201383) -372 NM_201383 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 8.200 6.413 1.186 1.874 5.086 4.359 7.647 3.128 11.033 8.483 2.443 4.823 2.703 2.937 4.010 5.200 4.704 2.907 0.882 0.747 2.752 4.192 2.213 3.342 6.053 6.252 2.481 1.587 11.329 6.787 9.102 1.765 2.888 8.520 3.290 1.616 5.954 7.769 1.591 4.007 4.778 2.851 540 chr16 86750490 86757605 + 0 NA TTS (NR_135181) TTS (NR_135181) 1518 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LOC101928614 - uncharacterized LOC101928614 ncRNA 0.264 0.044 0.060 0.065 0.057 0.134 0.067 0.070 0.071 0.083 0.077 0.269 0.156 0.027 0.286 0.068 0.020 0.174 0.010 0.020 0.054 0.840 0.586 0.132 0.086 0.126 0.170 0.186 6.959 0.112 0.050 0.368 0.293 0.081 0.041 0.022 0.213 0.008 246 chr11 67440404 67452224 + 0 NA intron (NM_001031615, intron 1 of 9) L1PB1|LINE|L1 2371 NM_001031615 222 Hs.87539 NM_000695 ENSG00000132746 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family member B2 protein-coding 0.347 0.105 0.610 0.529 1.277 0.010 0.080 0.170 6.653 1.474 2.175 0.990 0.005 0.304 2.087 0.707 1.138 0.263 0.068 0.035 0.042 0.037 0.083 0.163 0.061 0.026 0.434 0.193 0.096 0.036 0.073 4.159 0.648 0.047 1.001 2.345 0.233 0.133 0.026 0.010 0.017 1022 chr4 185393211 185397424 + 0 NA intron (NM_002199, intron 1 of 8) (CAG)n|Simple_repeat|Simple_repeat 409 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 5.697 6.333 1.866 1.753 4.865 4.934 7.766 2.511 12.782 10.111 6.838 2.745 2.817 3.279 3.504 4.783 2.668 2.533 1.641 3.484 3.556 5.741 2.466 4.452 4.499 10.048 4.387 3.110 8.185 4.907 5.038 4.078 3.746 8.006 4.674 2.289 3.220 3.905 3.401 2.930 2.349 1.252 1314 chr9 123629771 123641531 + 0 NA intron (NM_001286843, intron 3 of 4) intron (NM_001286843, intron 3 of 4) 3955 NM_015651 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding 1.755 2.110 0.158 2.045 3.937 1.830 5.859 1.117 7.961 3.412 2.590 3.163 1.419 1.328 1.554 3.580 0.626 1.742 1.474 1.205 2.467 3.059 2.311 2.764 5.365 3.582 1.269 2.268 3.473 4.217 6.573 1.741 2.271 4.983 5.093 0.800 0.640 4.289 2.620 2.101 4.971 3.570 55 chr1 88169707 88185568 + 0 NA Intergenic L2c|LINE|L2 -340299 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 0.152 0.063 4.918 0.036 0.114 0.040 0.051 0.020 0.056 0.050 0.067 0.018 0.008 0.041 0.103 0.031 0.169 0.109 0.044 0.009 0.075 0.045 0.024 0.034 0.094 0.011 0.005 0.044 0.107 0.123 0.045 0.035 0.077 0.049 0.041 0.047 0.026 0.026 0.027 0.019 0.029 0.010 910 chr22 29187002 29225782 + 0 NA Intergenic AluSx4|SINE|Alu -9832 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 0.957 0.682 0.722 0.260 1.037 0.744 0.654 0.299 nan 2.419 1.696 0.260 0.152 0.473 1.549 0.518 0.264 0.967 1.941 0.243 0.518 0.510 0.230 0.450 0.664 0.504 0.256 0.216 0.465 1.683 0.599 2.942 4.376 1.625 0.530 0.789 1.761 0.737 0.735 0.263 0.155 0.086 793 chr2 113955675 113979235 + 0 NA Intergenic Intergenic -25649 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 0.430 0.677 0.016 0.387 0.426 0.339 0.606 0.251 0.705 0.272 0.429 0.502 0.115 0.348 0.480 0.576 0.194 0.542 0.093 0.059 1.816 1.224 0.328 0.469 0.458 0.303 0.221 0.251 0.557 3.484 0.439 1.461 1.046 0.287 0.432 0.218 0.133 0.638 0.969 0.174 0.090 0.039 141 chr1 228268752 228276265 + 0 NA intron (NM_001024227, intron 1 of 4) intron (NM_001024227, intron 1 of 4) 1657 NM_001024227 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 3.898 5.347 1.100 0.882 3.041 2.256 3.986 1.906 6.017 4.417 3.839 1.223 0.852 3.402 3.893 2.684 1.299 2.341 1.059 1.575 2.984 3.236 2.259 4.609 5.670 4.383 2.023 1.535 2.811 4.094 3.245 2.700 3.269 5.039 2.042 2.117 2.065 4.331 2.944 1.685 1.625 1.022 1251 chr8 71574697 71583418 + 0 NA intron (NM_016027, intron 1 of 6) L2b|LINE|L2 2390 NM_016027 51110 Hs.118554 NM_016027 ENSG00000147592 LACTB2 CGI-83 lactamase beta 2 protein-coding 0.813 0.930 2.388 0.636 2.680 0.975 5.434 1.397 2.372 1.441 5.542 0.721 0.271 3.202 0.574 0.848 0.493 0.673 0.452 0.508 2.909 2.871 0.567 0.417 0.746 1.036 0.712 1.983 1.290 1.585 2.689 0.950 1.312 2.096 0.841 0.629 0.303 0.434 1.080 0.349 0.866 0.590 1247 chr8 67572624 67581342 + 0 NA exon (NM_025054, exon 1 of 3) exon (NM_025054, exon 1 of 3) 2469 NM_025054 80124 Hs.632066 NM_025054 ENSG00000175073 VCPIP1 DUBA3|VCIP135 valosin containing protein interacting protein 1 protein-coding 0.844 2.195 0.517 0.783 2.936 1.393 1.915 0.723 1.753 1.656 1.360 1.072 0.761 1.174 1.156 1.789 0.384 1.336 0.623 0.524 1.207 1.014 0.634 0.756 1.873 1.601 0.917 1.561 2.121 1.522 5.696 0.939 1.155 1.932 2.628 0.923 0.303 1.160 1.306 0.569 0.813 0.648 483 chr16 3011215 3021176 + 0 NA exon (NM_001253725, exon 3 of 8) exon (NM_001253725, exon 3 of 8) 1978 NM_024507 79412 Hs.661128 NM_024507 ENSG00000131650 KREMEN2 KRM2 kringle containing transmembrane protein 2 protein-coding 1.993 1.241 0.037 0.409 0.871 0.673 1.351 0.265 6.134 2.601 1.358 0.545 0.364 0.285 1.130 0.877 0.501 0.194 0.661 0.821 0.359 0.255 1.963 1.920 1.897 0.660 0.532 0.319 0.352 1.956 2.200 2.230 1.385 1.349 1.612 0.432 0.541 7.057 0.420 0.345 0.953 0.581 775 chr2 47560842 47589814 + 0 NA Intergenic AluSp|SINE|Alu -3115 NR_110208 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 0.863 0.928 0.574 1.717 2.256 1.029 1.555 1.209 nan 1.618 1.415 1.674 1.250 1.074 0.882 3.816 0.468 0.595 0.323 0.309 1.540 1.214 0.130 0.627 0.459 0.323 0.169 1.646 1.949 2.100 0.228 0.547 1.201 1.919 1.577 0.545 1.086 0.617 1.472 0.221 0.596 0.532 387 chr13 100606815 100651235 + 0 NA Intergenic Intergenic -4847 NM_033132 85416 Hs.508570 NM_033132 ENSG00000139800 ZIC5 - Zic family member 5 protein-coding 0.197 0.064 0.071 0.282 0.849 0.343 0.139 0.059 0.256 0.200 0.522 0.247 0.248 0.059 0.998 0.839 0.102 0.437 0.101 4.693 0.602 0.618 0.410 0.436 2.612 1.161 0.653 0.048 1.176 1.327 1.809 0.851 0.081 0.644 0.938 0.103 0.061 1.864 0.677 0.568 1.014 0.780 1285 chr8 144342347 144374683 + 0 NA exon (NM_138465, exon 4 of 4) exon (NM_138465, exon 4 of 4) 5355 NR_120682 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long noncoding RNA ncRNA 1.049 2.014 0.465 0.733 1.506 0.914 1.012 0.648 4.499 3.775 1.043 0.819 0.460 0.572 1.345 1.165 0.494 0.796 0.744 0.957 0.708 0.516 1.023 0.511 1.400 1.268 0.635 0.452 0.760 1.891 2.777 1.101 0.862 2.432 0.741 0.382 1.464 3.408 0.503 0.333 0.457 0.308 471 chr15 90573929 90619762 + 0 NA intron (NM_198526, intron 1 of 4) AluJb|SINE|Alu 46858 NR_036135 100422841 NR_036135 ENSG00000265871 MIR3174 - microRNA 3174 ncRNA 0.407 0.338 0.027 0.472 1.028 0.103 0.144 0.223 6.323 2.055 2.504 0.415 0.059 0.479 0.523 0.552 0.263 0.178 1.044 0.107 0.199 0.150 0.173 0.170 0.231 0.088 0.066 0.535 0.239 0.436 0.146 0.049 1.493 1.043 0.063 1.272 1.076 0.150 0.109 0.074 0.025 0.022 53 chr1 78442444 78450207 + 0 NA intron (NM_001317099, intron 1 of 3) intron (NM_001317099, intron 1 of 3) 457 NM_001317099 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 3.294 4.200 3.673 1.170 3.655 2.575 3.331 1.164 4.907 3.473 2.331 1.827 1.366 2.147 3.726 3.145 1.035 2.544 1.620 1.768 2.393 2.703 1.310 2.855 4.227 2.527 1.144 3.701 5.060 2.903 2.837 1.097 1.624 5.789 3.729 1.320 1.754 2.694 1.619 1.305 3.191 2.672 534 chr16 75267098 75291939 + 0 NA intron (NM_001170715, intron 1 of 6) intron (NM_001170715, intron 1 of 6) 2706 NM_001170719 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.451 4.653 0.081 1.162 3.713 4.073 1.809 0.454 1.720 0.990 1.359 1.681 1.320 0.826 1.160 1.605 1.681 2.574 0.560 0.145 2.263 2.384 1.451 0.726 3.956 4.749 2.218 1.229 3.350 2.005 4.556 1.102 1.158 4.911 2.340 0.563 0.688 2.026 1.794 1.652 1.556 0.975 358 chr12 122062813 122073065 + 0 NA intron (NM_032790, intron 1 of 1) intron (NM_032790, intron 1 of 1) 3484 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 1.854 1.621 0.676 0.963 2.132 1.504 1.317 0.800 4.580 2.020 1.363 1.926 0.746 1.204 1.195 4.428 0.780 1.909 0.493 0.731 1.785 1.284 1.138 1.583 4.472 4.243 1.932 1.380 1.744 2.610 3.896 2.192 1.787 3.275 3.407 0.624 0.511 4.212 1.994 1.627 0.906 0.604 322 chr12 54365768 54395163 + 0 NA intron (NM_017409, intron 1 of 1) intron (NM_017409, intron 1 of 1) -1162 NR_047506 100874365 Hs.607141 NR_047506 ENSG00000251151 HOXC-AS3 - HOXC cluster antisense RNA 3 ncRNA 0.221 0.077 1.552 0.006 0.101 0.511 0.058 0.029 9.420 4.264 0.240 0.050 0.369 0.075 1.029 0.274 0.807 2.297 0.873 6.083 0.612 0.690 1.474 0.788 3.130 1.433 0.717 1.699 3.470 2.201 3.409 0.463 0.906 0.063 0.136 0.224 2.823 6.307 0.644 0.340 5.433 3.691 1326 chr9 138981845 139012204 + 0 NA Intergenic Intergenic -9893 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 0.779 2.026 0.300 0.387 1.831 1.136 3.201 0.426 7.929 3.163 1.073 0.709 0.440 0.471 1.035 0.745 1.046 0.673 1.153 0.616 1.027 1.262 1.506 2.556 1.946 1.349 0.771 0.570 0.580 3.238 3.506 0.990 1.247 1.550 1.426 0.672 1.311 2.794 1.189 0.707 0.848 0.431 170 chr10 65272214 65284041 + 0 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -2996 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 2.573 2.574 3.018 0.586 1.493 2.615 2.905 1.477 3.329 2.045 1.134 0.530 0.718 1.587 2.756 2.396 1.530 1.115 0.498 0.915 1.016 1.243 0.512 0.852 4.913 2.439 1.124 0.624 1.475 2.189 1.232 0.762 2.017 2.303 3.844 1.034 0.968 1.459 1.414 1.797 1.251 0.760 61 chr1 109631594 109644809 + 0 NA non-coding (NR_136242, exon 4 of 4) non-coding (NR_136242, exon 4 of 4) -4614 NR_003023 677766 Hs.550815 NR_003023 ENSG00000270066 SCARNA2 HBII-382|mgU2-25/61 small Cajal body-specific RNA 2 ncRNA 1.993 1.452 0.548 0.630 1.746 3.907 1.756 0.409 2.880 2.279 1.488 0.855 0.508 1.305 4.051 1.294 0.665 1.857 0.995 2.791 1.087 1.295 0.940 1.989 4.187 1.639 0.781 0.974 1.568 1.581 2.390 1.043 2.635 1.823 4.663 0.793 0.890 5.215 1.192 0.769 5.734 6.658 180 chr10 112284112 112297127 + 0 NA Intergenic Intergenic 32994 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 0.746 1.515 0.014 0.915 1.063 0.413 1.582 1.901 1.661 0.614 0.179 0.523 1.049 1.092 0.681 4.146 0.286 0.471 0.669 0.032 0.848 0.541 1.044 0.677 3.881 3.247 1.210 0.390 1.084 2.096 3.610 0.061 0.468 0.670 1.591 0.386 0.108 0.717 0.819 0.588 0.058 0.047 446 chr15 52384224 52397198 + 0 NA Intergenic Intergenic 14261 NM_020396 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 0.184 2.303 0.010 0.573 0.465 0.248 0.168 0.262 0.820 0.216 0.114 0.392 0.744 0.621 1.072 2.049 0.479 4.368 0.039 0.011 2.562 2.250 0.761 14.821 1.051 0.798 0.340 0.101 4.179 0.676 2.129 1.360 1.059 0.357 4.000 0.854 0.204 0.137 1.507 2.047 0.231 0.168 239 chr11 65767594 65771378 + 0 NA promoter-TSS (NM_001143985) promoter-TSS (NM_001143985) -64 NM_001143985 8815 Hs.433759 NM_003860 ENSG00000175334 BANF1 BAF|BCRP1|D14S1460|NGPS barrier to autointegration factor 1 protein-coding 5.493 5.174 1.785 1.290 4.099 3.969 3.184 1.918 7.251 5.851 4.370 2.690 1.871 5.109 6.443 4.433 2.320 3.042 2.005 2.064 3.798 4.529 2.377 3.807 14.583 9.172 4.058 2.691 6.327 4.849 4.697 1.812 3.286 3.386 8.224 2.256 3.476 4.988 3.695 3.263 2.232 1.730 15 chr1 8929125 8979016 + 0 NA Intergenic Intergenic -14919 NM_001428 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 1.624 1.905 1.599 0.839 2.427 1.987 3.141 0.866 nan 2.033 3.539 2.004 1.428 2.303 1.367 2.906 1.576 1.358 0.581 0.447 2.951 3.135 0.583 4.028 4.165 1.944 0.837 1.586 3.291 2.826 2.990 1.512 2.099 2.359 5.498 0.685 1.663 3.375 2.144 2.003 0.850 0.683 114 chr1 161007584 161017068 + 0 NA intron (NM_207005, intron 4 of 10) intron (NM_207005, intron 4 of 10) 2401 NM_001276373 7391 Hs.414880 NM_007122 ENSG00000158773 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 2.601 1.665 1.536 0.961 2.199 3.779 2.132 1.402 5.061 3.154 2.918 1.954 2.079 2.464 2.163 2.306 0.764 1.235 2.857 0.745 2.067 2.090 0.866 2.161 1.924 1.468 0.814 1.370 1.361 1.622 2.191 1.231 1.521 2.269 1.650 1.405 0.988 4.399 1.787 0.919 0.814 0.681 184 chr10 115802153 115813038 + 0 NA TTS (NM_000684) TTS (NM_000684) 3789 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.152 0.072 3.583 0.139 0.303 0.035 1.194 0.098 1.875 1.097 0.662 0.309 0.054 0.321 0.097 0.602 0.298 0.039 0.599 0.025 0.598 0.495 0.841 0.228 0.263 0.419 0.298 0.098 0.138 0.411 0.615 0.044 0.245 0.405 4.557 0.155 0.113 0.637 0.224 0.021 0.042 0.018 1242 chr8 53371895 53382125 + 0 NA Intergenic Intergenic -54571 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 0.386 0.106 1.297 2.059 4.098 0.055 2.784 1.351 5.424 2.442 3.116 3.712 0.818 1.270 1.318 1.710 0.102 0.767 0.078 0.947 0.565 0.340 0.007 6.500 0.080 0.259 0.137 1.836 0.208 0.513 0.188 4.482 0.686 2.888 2.167 1.433 0.777 0.058 0.380 0.333 0.259 0.344 1184 chr7 14018588 14033060 + 0 NA 5' UTR (NM_001163151, exon 1 of 9) 5' UTR (NM_001163151, exon 1 of 9) 315 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 1.917 1.682 0.265 0.278 0.845 2.028 3.120 0.840 3.115 2.004 6.013 0.803 3.877 0.577 0.357 1.482 0.878 2.618 1.100 2.377 2.996 2.510 0.441 5.114 2.360 0.736 0.377 0.334 2.568 0.849 1.500 1.979 0.166 1.404 3.879 1.183 0.186 1.626 1.263 2.990 0.565 0.725 723 chr19 42612634 42627870 + 0 NA intron (NM_001207025, intron 5 of 13) MLT1C|LTR|ERVL-MaLR 16373 NM_001207025 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 0.577 2.936 0.008 1.412 1.499 0.862 0.220 1.009 nan 0.155 0.183 0.403 1.836 1.995 0.255 1.140 0.088 0.342 0.053 0.027 0.811 0.496 0.461 0.142 10.958 6.929 2.396 0.096 5.786 0.549 4.345 0.201 0.105 0.329 0.326 0.032 0.173 1.507 0.265 1.629 1.134 1.097 818 chr2 219175581 219194324 + 0 NA intron (NM_015488, intron 2 of 9) intron (NM_015488, intron 2 of 9) -2950 NM_022572 25953 Hs.98475 NM_015488 ENSG00000127838 PNKD BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2 paroxysmal nonkinesigenic dyskinesia protein-coding 0.242 1.328 0.696 0.302 0.971 0.696 0.256 0.202 1.132 0.411 3.749 0.218 0.166 0.180 1.558 0.296 0.163 0.408 0.032 0.363 0.818 0.614 0.691 2.224 1.558 0.515 0.267 0.606 0.181 2.707 0.728 0.214 3.448 0.553 0.365 2.027 1.672 1.481 0.250 0.463 0.077 0.046 1118 chr6 31701708 31715862 + 0 NA intron (NM_172165, intron 2 of 24).4 MIRb|SINE|MIR 1060 NR_037846 100532732 Hs.647011 NR_037846 ENSG00000255152 MSH5-SAPCD1 MSH5-C6orf26 MSH5-SAPCD1 readthrough (NMD candidate) ncRNA 4.616 4.654 1.238 1.206 4.072 5.579 2.746 2.535 8.123 4.071 5.070 2.016 1.809 1.687 2.912 5.879 1.165 2.804 3.813 2.281 2.905 3.348 0.636 3.748 6.075 4.338 1.862 2.093 6.557 2.606 5.529 2.936 1.791 5.556 5.013 1.010 1.510 5.942 2.562 2.558 2.895 1.639 34 chr1 42799226 42808372 + 0 NA Intergenic Intergenic -2251 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 2.220 1.767 0.569 0.436 2.082 1.317 1.907 1.098 7.508 2.883 2.689 1.515 1.017 1.481 2.717 2.796 0.774 1.110 5.791 1.306 1.450 1.389 1.033 1.251 2.822 1.568 0.847 2.138 1.457 1.834 1.864 1.601 1.465 2.316 2.763 0.832 4.751 2.464 1.286 0.899 0.863 0.512 675 chr18 51776801 51788689 + 0 NA Intergenic Intergenic -13104 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding 0.183 0.169 0.099 0.063 0.134 0.093 0.046 0.062 0.292 0.080 0.966 0.367 0.039 0.162 4.986 0.273 1.490 0.123 0.092 0.012 0.052 0.006 0.043 1.358 0.099 0.026 0.039 0.321 0.050 0.377 0.120 0.159 0.966 0.091 0.055 0.825 0.294 0.069 0.081 0.038 0.034 0.013 1033 chr5 2738298 2759246 + 0 NA exon (NM_001134222, exon 3 of 5) exon (NM_001134222, exon 3 of 5) 2997 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.057 0.085 0.407 0.018 0.091 0.018 10.504 0.430 1.294 0.651 1.419 0.035 1.197 2.984 0.111 1.417 1.462 0.061 3.716 0.529 1.632 1.474 0.007 0.866 0.081 0.025 0.021 0.074 0.223 0.139 0.029 0.023 0.109 0.102 0.022 0.017 1.673 0.545 0.102 1.284 0.014 0.007 178 chr10 112214377 112221847 + 0 NA Intergenic Intergenic -39513 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 0.222 0.697 0.059 0.133 0.460 0.641 0.309 0.813 2.539 0.807 0.721 0.358 0.286 0.377 3.411 2.258 0.245 0.622 0.902 0.019 0.911 0.550 0.267 0.350 1.384 0.241 0.219 0.216 0.162 2.261 0.402 4.556 2.146 0.445 0.393 0.395 0.332 0.214 1.752 0.275 0.046 0.016 1183 chr7 13052731 13120219 + 0 NA Intergenic Intergenic 359564 NM_001195396 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.243 0.145 0.039 0.076 0.130 0.044 0.164 0.086 0.604 0.245 0.872 0.212 0.073 0.076 0.158 0.182 0.048 0.243 0.051 4.383 0.158 0.040 0.018 0.288 0.094 0.016 0.023 0.136 0.221 0.315 0.026 0.099 0.263 0.076 0.073 0.141 0.189 0.096 0.192 0.109 0.381 0.424 84 chr1 153914547 153922940 + 0 NA intron (NM_014856, intron 1 of 27) CpG 411 NM_014856 9909 Hs.744878 NM_014856 ENSG00000198837 DENND4B KIAA0476 DENN domain containing 4B protein-coding 1.650 1.843 0.649 0.567 1.975 2.335 1.657 0.491 14.880 12.801 1.817 0.785 1.040 1.027 1.044 1.060 0.750 1.110 1.564 1.272 1.214 1.581 1.540 2.285 2.453 1.623 0.873 0.642 0.979 2.435 2.250 5.195 4.549 2.181 1.754 0.888 2.540 6.681 1.302 0.651 0.501 0.351 469 chr15 90355012 90373528 + 0 NA Intergenic L1M5|LINE|L1 -6198 NM_001150 290 Hs.1239 NM_001150 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl aminopeptidase, membrane protein-coding 0.498 2.061 0.027 0.429 0.281 1.052 0.084 0.432 0.352 0.100 0.100 0.500 0.218 1.134 3.458 1.613 0.993 1.647 0.048 0.041 0.818 0.520 0.250 0.175 5.569 0.478 0.315 0.116 6.787 1.086 1.080 0.034 0.403 0.225 0.197 0.077 0.777 0.716 1.415 0.808 0.365 0.386 213 chr11 57088569 57094218 + 0 NA intron (NM_033396, intron 1 of 11) intron (NM_033396, intron 1 of 11) 1020 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 3.259 5.098 1.838 1.305 4.382 8.028 2.748 1.687 7.855 4.647 8.737 2.301 1.272 2.130 3.841 3.606 2.557 5.349 2.643 2.867 2.041 2.176 2.999 2.232 9.499 2.250 1.078 1.871 5.652 6.014 4.025 3.650 2.083 4.011 2.819 1.862 1.997 4.972 2.513 3.910 1.213 0.638 1136 chr6 42182677 42198809 + 0 NA Intergenic Intergenic -5110 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 2.712 0.950 0.408 1.491 3.592 1.863 1.862 1.871 4.061 2.453 2.424 2.319 1.222 1.352 2.463 6.054 0.963 1.426 0.710 0.180 2.766 2.336 0.225 1.057 1.644 1.049 0.534 2.217 5.294 0.994 2.359 1.537 1.344 3.000 6.307 0.955 3.564 0.823 3.284 0.865 4.181 4.184 536 chr16 84757421 84772577 + 0 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 31444 NM_001272075 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 1.463 3.839 0.357 0.788 2.354 6.039 0.888 0.396 2.143 1.267 1.031 1.168 1.012 0.870 3.917 1.532 0.626 3.181 0.606 0.378 2.453 1.828 0.835 3.913 3.624 4.630 1.972 0.663 1.838 1.374 1.709 1.220 2.645 2.149 5.916 1.248 1.630 1.689 1.586 0.970 1.672 1.681 872 chr20 55175987 55184680 + 0 NA Intergenic AluSx|SINE|Alu -24025 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 0.677 0.072 4.189 0.108 0.351 2.214 1.322 0.787 2.230 0.770 1.297 0.867 0.014 0.871 3.110 1.041 1.298 0.075 0.037 0.016 0.257 0.076 0.061 0.092 0.488 0.069 0.063 2.056 0.148 0.500 0.032 2.639 2.370 1.091 0.106 0.986 3.137 0.357 0.443 0.114 0.020 0.012 97 chr1 155094469 155113399 + 0 NA exon (NM_004428, exon 2 of 5) exon (NM_004428, exon 2 of 5) 3585 NM_182685 1942 Hs.516664 NM_004428 ENSG00000169242 EFNA1 B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 ephrin A1 protein-coding 2.774 2.313 1.645 1.543 3.544 9.537 3.881 2.002 7.070 3.988 5.861 2.559 1.414 2.860 2.722 3.095 1.548 1.214 3.307 0.752 2.085 1.822 2.888 5.834 6.475 3.065 1.668 2.232 1.062 3.648 2.434 13.553 9.152 5.982 3.468 2.410 6.311 10.164 3.319 0.896 0.891 0.435 1226 chr7 156792381 156812743 + 0 NA promoter-TSS (NM_001165255) promoter-TSS (NM_001165255) -433 NM_001165255 3110 Hs.37035 NM_005515 ENSG00000130675 MNX1 HB9|HLXB9|HOXHB9|SCRA1 motor neuron and pancreas homeobox 1 protein-coding 1.063 0.134 0.080 0.019 0.042 0.250 0.437 0.371 1.303 0.648 1.029 0.007 0.160 0.204 0.461 0.159 0.094 0.105 2.478 0.259 0.296 0.160 0.454 0.171 1.541 0.401 0.280 0.075 0.270 1.461 0.777 1.263 1.491 0.055 0.155 0.355 0.187 1.396 0.102 0.101 0.503 0.282 1176 chr7 4775907 4790100 + 0 NA intron (NM_001037165, intron 2 of 8) AluSz|SINE|Alu -32259 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 zeta 1 subunit protein-coding 0.661 2.208 0.488 0.492 1.300 2.783 2.674 1.163 nan 2.337 3.262 0.802 1.250 1.026 0.357 1.651 0.619 2.519 0.184 0.216 2.040 1.941 0.651 3.006 2.313 1.385 0.564 1.104 3.568 5.683 2.384 0.205 1.532 3.977 3.917 1.354 0.269 0.413 2.604 1.584 1.420 1.017 250 chr11 72516436 72526927 + 0 NA Intergenic L2a|LINE|L2 -3770 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 1.546 3.028 0.893 0.666 1.460 1.763 1.328 1.301 nan 2.100 1.713 1.070 0.885 1.950 3.578 2.265 0.392 1.240 0.934 0.805 3.036 3.236 1.278 3.609 5.139 2.290 1.127 1.131 2.520 3.488 2.381 1.574 5.852 2.847 2.752 1.061 1.562 4.466 1.241 2.230 1.016 0.666 888 chr21 33782580 33791151 + 0 NA intron (NM_001320744, intron 1 of 5) intron (NM_001320744, intron 1 of 5) 2120 NR_104472 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 0.218 2.432 0.036 0.023 0.013 6.400 0.184 0.086 1.794 0.581 0.928 0.445 0.838 2.147 0.167 0.850 0.044 1.983 0.082 0.016 0.436 0.184 0.217 4.594 4.950 0.219 0.154 0.047 0.333 4.896 0.235 4.644 2.597 0.034 0.033 1.396 4.648 0.956 0.082 1.143 3.274 3.875 237 chr11 65623565 65630364 + 0 NA promoter-TSS (NM_025128) promoter-TSS (NM_025128) -908 NM_025128 80198 Hs.288798 NM_025128 ENSG00000172732 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 5.563 7.787 3.442 1.784 5.230 7.888 4.201 2.090 8.210 6.847 4.727 3.628 2.794 5.765 7.878 4.436 2.007 2.956 3.630 3.529 2.802 3.575 4.016 3.412 19.082 7.344 3.497 3.802 8.958 6.487 6.572 2.940 5.153 5.762 9.030 2.090 3.533 9.935 4.486 4.955 3.430 2.000 1013 chr4 129433728 129451673 + 0 NA Intergenic Intergenic 93529 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 1.105 1.140 0.504 0.604 0.919 1.441 0.966 1.557 1.902 0.835 1.140 1.350 1.318 1.138 0.720 3.360 0.772 3.514 0.045 0.037 2.547 1.619 0.327 3.150 1.328 1.068 0.580 0.952 8.437 1.361 0.531 1.176 1.656 0.944 1.603 0.758 1.424 0.220 1.376 0.901 0.600 0.522 911 chr22 29416655 29430594 + 0 NA intron (NR_046851, intron 2 of 2) intron (NR_046851, intron 2 of 2) 3840 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 2.862 0.892 0.009 0.940 1.814 0.340 2.327 1.079 nan 1.294 0.718 0.952 0.754 0.525 0.910 1.343 0.219 2.022 0.158 0.059 0.880 0.921 0.059 0.204 0.495 0.875 0.302 0.538 2.087 2.886 0.344 3.844 1.548 2.974 0.838 0.735 0.439 0.066 2.211 1.330 1.624 1.219 978 chr3 184048615 184055289 + 0 NA intron (NM_001194947, intron 32 of 32) L2b|LINE|L2 -1765 NM_001171093 131408 Hs.591307 NM_144635 ENSG00000175182 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131 member A protein-coding 6.853 1.710 0.495 0.713 1.634 1.713 3.081 1.835 1.810 1.203 1.255 1.371 1.049 0.819 0.811 3.196 0.431 0.799 0.601 0.296 1.896 1.600 0.997 0.885 4.443 7.811 2.676 0.897 2.011 0.998 3.770 0.252 0.738 4.116 2.315 0.382 0.409 1.370 1.691 2.665 4.061 3.358 721 chr19 41767014 41774733 + 0 NA promoter-TSS (NM_001321211) promoter-TSS (NM_001321211) -82 NM_001301016 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 7.145 7.451 1.913 2.436 7.132 6.278 6.467 1.571 nan 4.929 5.985 2.653 3.634 3.603 4.814 3.434 3.470 4.031 2.534 2.856 3.855 5.862 6.327 4.183 10.304 6.468 2.116 2.990 6.032 11.095 13.851 3.135 3.073 9.517 2.209 3.487 3.671 6.242 1.582 3.186 3.840 3.044 139 chr1 224072793 224079391 + 0 NA Intergenic Intergenic -42418 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 0.603 0.613 0.028 1.061 0.800 0.057 1.707 1.727 1.091 0.239 0.244 0.578 0.217 4.486 0.641 1.613 0.145 0.670 0.045 0.021 1.408 0.833 0.045 0.664 2.379 2.727 1.207 0.939 1.650 0.170 0.926 0.192 0.465 1.186 0.713 0.259 0.234 1.305 0.717 0.180 0.122 0.118 1152 chr6 90924973 90930635 + 0 NA intron (NM_001170794, intron 1 of 6) intron (NM_001170794, intron 1 of 6) 78823 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25 BTB domain and CNC homolog 2 protein-coding 1.360 0.703 8.708 1.339 2.677 0.034 1.838 0.706 6.592 3.978 1.910 1.810 0.807 2.387 0.646 1.576 0.676 2.494 0.166 0.024 0.997 0.902 0.014 1.322 0.787 0.203 0.164 2.994 1.891 1.071 1.745 0.868 0.629 4.816 0.424 0.576 0.912 0.088 1.331 0.443 0.651 0.726 643 chr17 73835472 73853295 + 0 NA intron (NM_012478, intron 4 of 7) intron (NM_012478, intron 4 of 7) -3585 NM_199242 201294 Hs.41045 NM_199242 ENSG00000092929 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D protein-coding 3.011 4.117 1.429 1.588 3.682 0.308 2.630 1.938 8.727 4.916 2.788 2.554 1.910 2.575 1.824 3.382 1.479 0.796 1.229 0.573 1.837 1.602 0.672 0.861 5.235 3.131 1.171 2.038 1.109 2.186 1.286 0.427 1.884 5.145 0.718 1.641 2.242 1.458 1.834 1.289 0.623 0.376 1328 chr9 139775592 139782370 + 0 NA Intergenic AluSx|SINE|Alu -1984 NM_021138 7186 Hs.522506 NM_021138 ENSG00000127191 TRAF2 MGC:45012|TRAP|TRAP3 TNF receptor associated factor 2 protein-coding 3.784 7.279 0.349 1.816 5.021 1.247 5.120 1.269 3.981 1.873 1.430 1.939 0.966 2.390 1.918 1.755 0.998 1.601 1.027 0.573 3.104 3.640 2.475 3.202 18.666 4.831 2.267 1.481 3.141 6.097 4.340 4.613 4.328 4.958 2.020 1.166 6.424 6.611 2.278 1.445 0.817 0.515 576 chr17 29024379 29041802 + 0 NA Intergenic CpG -3536 NR_144395 440423 Hs.628886 NR_024187 SUZ12P1 SUZ12P SUZ12 polycomb repressive complex 2 subunit pseudogene 1 pseudo 0.875 2.111 0.816 0.560 2.595 0.277 1.063 0.401 4.670 2.164 1.982 0.513 0.495 0.734 0.829 1.074 0.685 0.337 0.482 1.464 0.893 0.531 1.082 0.885 0.900 0.588 0.315 0.904 0.988 2.481 1.292 0.797 0.765 3.722 0.444 0.435 0.450 2.139 0.654 0.489 0.364 0.135 230 chr11 65132986 65155882 + 0 NA exon (NM_001278250, exon 4 of 5) exon (NM_001278250, exon 4 of 5) 5423 NM_001278250 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding 0.873 1.258 0.818 0.671 1.188 1.813 1.092 0.942 7.500 2.918 1.786 0.804 0.996 1.083 1.476 1.478 0.643 1.627 1.025 0.315 1.950 1.726 1.083 1.248 2.779 1.326 0.640 1.163 2.082 3.719 2.213 1.355 1.301 1.869 1.312 1.214 2.533 2.045 1.289 1.355 0.606 0.413 962 chr3 141045079 141061387 + 0 NA intron (NM_001080412, intron 1 of 7) (TTCC)n|Simple_repeat|Simple_repeat 10178 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 0.183 0.422 0.019 1.607 2.038 0.264 2.685 1.118 4.035 0.696 0.544 0.871 0.645 1.122 0.141 2.839 0.018 0.929 0.116 0.026 1.690 0.798 0.032 0.740 0.305 0.087 0.091 1.243 1.795 1.599 1.048 2.790 1.016 0.980 4.499 0.291 0.030 0.053 1.751 0.318 0.821 0.963 1014 chr4 129473341 129498384 + 0 NA Intergenic LTR81C|LTR|Gypsy 136691 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 1.386 0.488 0.170 0.257 0.401 2.144 0.685 0.783 1.220 0.436 0.607 0.452 0.698 0.609 0.295 1.072 0.201 1.643 0.279 0.032 0.961 0.597 0.212 1.123 0.361 0.298 0.162 0.674 3.400 1.918 0.336 2.699 0.759 0.312 0.899 0.234 0.263 0.104 0.575 0.183 0.915 0.683 1331 chr9 140185940 140196646 + 0 NA Intergenic Intergenic 5410 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 1.715 0.880 0.242 0.177 0.530 0.024 1.505 0.234 2.695 1.241 0.112 0.137 0.044 0.133 1.111 0.329 0.142 0.369 0.711 0.367 0.449 0.223 0.613 0.291 1.070 0.396 0.311 0.090 0.329 1.475 1.598 2.726 2.437 0.741 0.602 0.160 1.312 2.777 0.261 0.058 0.221 0.161 829 chr2 240185380 240207789 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -30573 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 0.218 2.341 0.019 0.879 1.429 3.179 0.279 0.373 3.914 0.986 0.576 0.749 1.326 0.524 1.139 3.907 0.004 1.913 0.040 0.120 3.125 2.947 0.098 7.539 0.671 0.327 0.188 0.208 0.970 2.814 0.181 1.089 2.820 1.282 1.978 1.752 0.479 0.318 1.298 1.756 2.654 2.078 374 chr13 41545085 41616813 + 0 NA intron (NM_172373, intron 1 of 8) intron (NM_172373, intron 1 of 8) 12559 NM_172373 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 - E74 like ETS transcription factor 1 protein-coding 0.530 0.312 0.582 0.209 0.655 0.066 0.248 0.257 3.972 2.293 0.602 0.277 0.176 0.273 0.459 0.539 0.106 0.180 0.155 0.008 0.309 0.138 0.052 0.469 0.061 0.091 0.057 0.308 0.155 0.227 0.084 0.123 0.462 0.443 0.248 0.261 0.361 0.031 0.104 0.175 0.022 0.015 1261 chr8 99951275 99961860 + 0 NA promoter-TSS (NM_001142462) promoter-TSS (NM_001142462) -64 NM_001286841 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 3.243 0.994 3.877 0.724 1.879 0.640 5.494 1.193 2.438 0.888 1.177 0.345 1.426 0.826 3.148 4.030 1.328 2.006 0.368 2.683 0.621 0.356 0.834 0.620 2.541 1.100 0.767 0.174 0.838 1.795 3.047 1.108 2.176 1.362 1.696 0.382 1.536 2.321 0.269 0.231 0.435 0.135 436 chr14 103850861 103867131 + 0 NA intron (NM_001128920, intron 1 of 15) intron (NM_001128920, intron 1 of 15) 7295 NM_001128919 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a microtubule affinity regulating kinase 3 protein-coding 1.572 0.992 0.208 0.173 0.715 0.865 1.091 0.551 2.333 1.753 1.436 0.697 0.373 0.478 3.469 0.968 0.499 0.729 0.258 0.390 1.479 1.056 0.372 0.898 1.055 1.202 0.685 0.551 0.927 1.272 3.221 0.452 1.624 0.741 0.922 0.512 0.660 0.989 1.226 2.182 0.312 0.272 897 chr21 40269105 40304440 + 0 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 23581 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 0.329 0.131 0.079 0.124 0.287 0.040 0.296 0.065 4.628 1.472 2.201 0.235 0.090 0.419 0.452 0.194 0.361 0.216 0.234 0.012 0.823 0.347 0.056 0.062 0.116 0.059 0.027 0.260 0.229 0.638 0.058 1.587 2.081 0.488 0.071 1.221 1.083 0.103 0.248 0.060 0.024 0.016 245 chr11 67391067 67400966 + 0 NA intron (NM_001243750, intron 2 of 3) L2c|LINE|L2 1392 NM_001243750 254552 Hs.433329 NM_181843 ENSG00000167799 NUDT8 - nudix hydrolase 8 protein-coding 0.512 0.899 0.246 0.193 1.168 0.694 0.777 0.245 3.260 1.107 1.605 0.267 0.169 0.354 0.934 0.525 0.231 1.365 0.441 0.289 0.334 0.219 0.645 0.493 2.145 0.695 0.410 0.396 0.463 1.423 1.460 1.862 0.828 1.611 2.139 0.473 0.711 12.137 1.179 0.361 0.262 0.144 725 chr19 42745390 42763670 + 0 NA exon (NM_006494, exon 2 of 4) exon (NM_006494, exon 2 of 4) 3521 NM_001308402 2077 Hs.655969 NM_006494 ENSG00000105722 ERF CHYTS|CRS4|PE-2|PE2 ETS2 repressor factor protein-coding 4.426 5.993 1.051 0.863 3.249 3.739 2.097 0.612 nan 2.342 3.627 0.945 1.991 1.627 2.194 1.384 1.969 3.778 1.720 2.466 1.767 1.857 4.524 2.762 4.831 2.527 1.185 0.806 2.571 7.390 10.155 2.385 1.819 3.046 0.962 1.653 2.126 5.646 0.761 2.292 1.528 0.939 881 chr20 62666605 62700070 + 0 NA Intergenic Intergenic -2358 NM_018419 54345 Hs.8619 NM_018419 ENSG00000203883 SOX18 HLTRS|HLTS SRY-box 18 protein-coding 0.808 1.537 0.122 0.313 0.604 1.278 0.583 0.402 4.151 1.855 0.816 0.852 0.434 0.377 0.899 1.006 0.367 0.566 0.611 0.440 0.706 0.696 0.599 1.065 2.205 0.856 0.571 0.165 0.454 1.166 1.335 0.592 1.410 1.338 1.035 0.705 0.474 4.915 1.160 0.483 0.255 0.140 824 chr2 234464100 234475893 + 0 NA intron (NM_018218, intron 2 of 30) L1PA3|LINE|L1 4240 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 0.910 1.578 0.347 0.547 1.230 1.196 1.027 0.311 1.524 1.579 3.070 0.520 0.831 0.661 4.086 1.780 0.231 4.052 0.450 0.408 4.157 4.248 0.497 5.543 0.976 1.177 0.451 0.567 1.060 3.134 1.136 0.727 0.719 0.624 1.341 0.862 0.815 1.058 0.914 0.949 0.788 0.757 915 chr22 35746323 35784186 + 0 NA Intergenic AluY|SINE|Alu -11806 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 0.506 0.799 0.313 0.973 1.713 2.058 0.971 0.605 nan 0.621 0.483 0.534 0.221 0.585 1.252 1.286 0.578 1.563 0.079 0.352 0.710 0.496 0.587 2.063 1.232 1.858 0.929 0.250 0.747 1.765 0.984 1.145 2.255 4.019 1.092 0.485 0.586 1.854 1.356 0.581 0.246 0.134 26 chr1 27017255 27034937 + 0 NA intron (NM_139135, intron 1 of 19) intron (NM_139135, intron 1 of 19) 3574 NM_006015 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 4.402 4.146 4.643 0.847 3.324 4.949 4.480 1.502 8.548 4.966 4.041 1.639 1.173 2.933 3.000 3.055 2.230 2.940 2.053 4.534 2.143 2.367 2.865 3.293 6.900 2.909 1.396 1.746 3.251 3.306 4.447 1.896 2.555 3.930 8.708 1.510 3.337 6.138 2.102 2.713 1.502 1.018 874 chr20 55352104 55372568 + 0 NA Intergenic AluSz|SINE|Alu 157978 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 0.114 0.125 0.082 0.139 0.418 8.106 0.898 0.685 2.818 0.866 0.894 0.908 1.032 1.019 1.004 2.057 1.149 0.046 0.035 0.054 1.088 0.772 1.343 4.115 7.014 2.563 1.017 1.449 0.874 4.785 0.236 0.547 2.249 0.635 2.094 1.204 3.128 9.675 1.846 0.474 2.603 2.860 867 chr20 50146072 50160200 + 0 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) 6122 NM_012340 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 1.819 0.804 0.141 0.843 1.110 0.080 1.826 1.628 1.177 0.681 0.616 0.736 0.401 1.908 0.823 1.566 0.251 0.285 0.050 0.063 0.580 0.434 0.103 0.123 0.609 4.269 1.993 1.126 0.445 0.340 0.151 0.106 0.305 1.248 3.397 0.104 0.206 0.644 0.273 0.912 0.029 0.022 647 chr17 76835168 76838581 + 0 NA promoter-TSS (NM_001321291) promoter-TSS (NM_001321291) -265 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 6.134 5.606 0.798 1.827 4.987 9.469 5.941 1.180 12.435 11.132 5.383 3.164 2.126 4.328 2.504 4.289 1.029 2.416 3.134 2.033 3.184 3.824 4.054 5.165 5.398 2.957 1.667 1.948 4.818 6.392 5.788 5.576 6.839 14.070 2.676 3.854 4.213 9.678 2.596 2.012 1.636 1.342 909 chr22 20918663 20926116 + 0 NA intron (NM_001003891, intron 7 of 17) AluJb|SINE|Alu 60054 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 2.925 2.138 14.812 1.183 2.538 1.719 3.257 3.681 nan 0.372 4.208 1.748 0.333 0.658 2.033 2.097 3.428 0.408 0.041 0.037 0.912 0.831 2.182 0.087 1.347 0.391 0.147 1.187 1.932 0.360 0.292 0.078 0.842 7.793 0.082 0.738 3.466 0.176 1.470 1.122 1.091 0.787 627 chr17 49177155 49187228 + 0 NA intron (NM_001130527, intron 1 of 29) AluY|SINE|Alu 16035 NM_001130527 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 0.223 0.236 4.040 0.075 0.318 0.122 0.190 0.042 nan 0.150 0.232 0.043 0.213 0.076 0.421 0.434 0.048 0.187 0.049 0.068 0.588 0.302 0.227 0.149 0.219 0.053 0.061 0.085 0.356 0.394 0.394 0.063 0.137 0.231 0.287 0.036 0.180 0.155 0.233 0.030 0.029 0.020 1112 chr6 30874900 30895799 + 0 NA intron (NM_001167734, intron 9 of 29) intron (NM_001167734, intron 9 of 29) 3241 NM_001167734 57176 Hs.597526 NM_020442 ENSG00000137411 VARS2 COXPD20|VALRS|VARS2L|VARSL valyl-tRNA synthetase 2, mitochondrial protein-coding 1.451 0.979 0.347 0.599 1.214 1.185 0.686 1.961 1.076 0.558 1.206 0.571 0.230 0.671 0.742 3.012 0.271 0.560 0.417 0.443 0.950 0.746 0.351 0.782 0.896 1.032 0.637 0.854 0.748 0.910 1.360 0.920 0.619 0.904 0.803 0.333 0.495 1.378 0.597 0.343 0.251 0.150 695 chr19 12885213 12912717 + 0 NA TTS (NR_049864) TTS (NR_049864) 1023 NR_049864 100847071 NR_049864 ENSG00000263800 MIR5684 - microRNA 5684 ncRNA 4.649 3.306 1.621 1.764 4.826 5.729 3.089 1.882 nan 7.793 6.382 2.120 1.005 2.912 6.050 3.521 3.366 1.716 1.769 3.400 2.107 2.324 2.602 3.664 5.003 1.811 0.931 1.870 2.367 3.951 5.606 1.958 3.763 5.799 2.253 2.285 4.722 5.403 4.270 1.487 0.626 0.349 445 chr15 40628702 40637914 + 0 NA promoter-TSS (NM_207380) promoter-TSS (NM_207380) -140 NM_207380 388115 Hs.32433 NM_207380 ENSG00000188549 C15orf52 - chromosome 15 open reading frame 52 protein-coding 3.353 4.195 0.209 2.079 3.374 1.122 4.397 2.627 8.694 5.387 4.100 4.556 3.456 2.780 4.477 6.206 2.318 4.555 1.214 0.071 1.774 1.886 0.427 3.808 6.768 6.287 2.221 0.626 13.203 1.494 3.339 0.060 2.555 4.486 1.729 1.568 2.421 3.460 4.252 11.048 8.430 6.818 1111 chr6 30843844 30855000 + 0 NA promoter-TSS (NM_001297652).6 promoter-TSS (NM_001297652).6 -968 NM_001297652 780 Hs.631988 NM_001954 ENSG00000204580 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 3.761 2.271 2.092 1.093 2.965 1.772 1.966 1.538 5.519 3.876 4.033 1.561 0.613 1.204 3.265 2.956 1.859 1.822 0.945 0.273 1.688 1.515 0.866 3.727 3.984 0.617 0.470 1.063 0.955 3.572 3.393 2.809 2.219 2.876 0.505 1.361 3.015 4.566 1.285 1.476 0.729 0.450 256 chr11 75074091 75100756 + 0 NA Intergenic Intergenic -23112 NM_001005 6188 Hs.546286 NM_001005 ENSG00000149273 RPS3 S3 ribosomal protein S3 protein-coding 0.132 0.202 0.501 0.291 0.498 0.223 0.321 0.639 nan 0.801 1.195 0.676 0.163 0.752 1.302 1.333 0.334 0.190 0.338 0.073 0.699 0.375 0.125 0.472 0.704 0.317 0.189 0.961 0.298 1.047 0.092 0.556 2.660 0.726 4.070 0.201 3.716 0.425 0.513 0.100 0.043 0.036 95 chr1 155033755 155037338 + 0 NA promoter-TSS (NM_005227) promoter-TSS (NM_005227) -667 NM_005227 1945 Hs.449913 NM_005227 ENSG00000243364 EFNA4 EFL4|EPLG4|LERK4 ephrin A4 protein-coding 1.369 2.044 0.311 0.813 2.860 1.866 1.442 0.499 1.849 0.731 2.525 1.666 1.325 0.639 0.876 0.848 0.563 0.611 0.782 0.880 0.714 0.631 0.839 1.402 1.081 0.589 0.331 0.489 0.392 1.822 2.049 8.440 3.221 2.732 1.261 0.753 1.684 6.714 1.008 0.466 0.807 0.443 275 chr11 129058616 129063160 + 0 NA intron (NM_001142685, intron 1 of 21) intron (NM_001142685, intron 1 of 21) 1205 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 2.468 0.152 8.474 0.667 1.730 0.014 2.273 1.648 4.444 2.660 2.305 0.545 0.524 3.418 4.959 1.088 3.784 0.282 0.089 0.754 0.381 0.144 3.364 1.778 0.119 0.188 2.508 0.219 0.903 0.218 1.037 2.356 1.340 0.122 1.313 3.501 0.039 0.280 0.017 0.038 1313 chr9 117640845 117676469 + 0 NA intron (NM_001252290, intron 4 of 4) MER5B|DNA|hAT-Charlie 34218 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 0.151 0.171 0.348 0.276 0.560 1.042 1.081 0.710 7.973 2.044 2.461 0.434 0.312 0.212 0.103 0.918 0.231 0.645 0.427 0.012 0.245 0.063 0.035 0.109 0.523 1.963 0.952 0.518 0.720 0.602 0.347 1.217 0.464 0.971 0.629 0.691 0.541 0.202 0.500 0.200 0.042 0.019 229 chr11 65075055 65086369 + 0 NA Intergenic AluJb|SINE|Alu -1577 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding 1.005 3.464 0.126 0.588 1.420 0.880 0.397 0.945 4.707 2.283 0.696 1.573 0.676 1.794 1.953 1.856 0.541 1.070 0.591 0.548 1.714 1.513 1.392 1.066 3.906 5.044 2.039 0.568 0.428 1.800 1.659 0.321 1.511 1.069 1.742 1.568 0.283 1.671 1.259 1.277 0.387 0.206 1265 chr8 102613441 102621246 + 0 NA intron (NM_001330593, intron 8 of 15) intron (NM_001330593, intron 8 of 15) 112675 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 0.734 0.356 3.892 0.755 1.429 0.057 0.528 1.519 7.762 2.546 3.541 2.609 0.492 0.821 2.530 3.865 2.671 0.717 0.166 0.018 0.911 0.418 0.038 0.595 0.119 0.090 0.089 1.148 0.192 0.830 0.064 2.028 5.024 1.650 0.903 1.362 3.632 0.074 0.707 1.937 0.044 0.013 1146 chr6 50532217 50578088 + 0 NA Intergenic L1MA9|LINE|L1 -126105 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 0.050 0.064 0.041 0.017 0.046 0.025 0.055 0.005 0.260 0.091 0.201 0.045 0.036 0.017 0.078 0.075 0.006 0.032 0.044 2.835 0.004 0.011 0.006 0.046 0.034 0.016 0.005 0.017 0.089 0.011 0.029 0.039 0.019 0.042 0.022 0.029 0.034 0.009 0.021 0.010 0.019 0.010 468 chr15 90291666 90330267 + 0 NA Intergenic Intergenic -8623 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 1.483 0.445 0.137 0.314 0.479 0.568 0.249 0.485 0.937 0.353 0.381 0.216 0.034 1.427 3.383 1.087 0.546 0.476 0.086 0.135 0.451 0.262 0.484 0.293 0.843 0.197 0.151 0.230 0.671 1.175 0.620 0.304 0.968 0.272 0.184 0.661 1.871 0.849 0.399 0.219 0.107 0.052 56 chr1 94053282 94091134 + 0 NA intron (NM_001261408, intron 5 of 13) L2|LINE|L2 7494 NM_001261410 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 0.943 0.714 0.489 0.522 0.878 0.664 0.223 0.250 2.801 0.774 0.307 0.355 0.100 0.474 0.922 0.853 0.553 1.102 20.711 0.022 0.801 0.469 0.150 1.105 0.869 0.170 0.092 0.632 0.469 1.316 0.298 2.019 2.701 0.713 0.346 0.362 0.692 0.279 0.415 0.273 2.094 1.734 1090 chr5 172283887 172300886 + 0 NA intron (NM_001031711, intron 1 of 9) intron (NM_001031711, intron 1 of 9) 31163 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 0.960 1.390 0.011 0.580 1.281 1.644 4.861 2.040 2.187 0.439 0.205 1.273 1.090 3.212 0.726 2.408 0.285 0.327 0.065 0.065 2.135 1.376 0.618 0.165 2.281 2.681 1.279 1.100 0.972 1.095 0.620 0.497 0.346 1.842 5.863 0.533 0.354 0.278 0.950 0.506 4.883 3.742 1159 chr6 122231410 122265596 + 0 NA Intergenic L2b|LINE|L2 -472193 NM_001243094 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 0.055 0.064 0.022 0.061 0.111 0.039 0.082 0.089 0.732 0.238 0.222 0.115 0.090 0.070 0.191 0.100 0.020 0.204 0.021 7.226 0.022 0.009 0.052 0.036 0.051 0.012 0.007 0.020 0.102 0.060 0.052 0.035 0.076 0.058 0.038 0.043 0.022 0.015 0.041 0.020 0.022 0.018 432 chr14 103521962 103543003 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -8740 NM_006035 9578 Hs.654634 NM_006035 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta protein-coding 3.736 1.007 0.510 0.359 0.668 0.914 1.649 0.619 2.972 1.487 1.491 1.085 0.246 1.443 3.566 1.289 0.894 0.316 0.180 0.296 3.194 2.878 0.427 2.590 0.579 0.916 0.508 1.819 0.656 4.042 2.007 2.018 6.232 0.769 0.833 1.163 3.175 0.991 1.310 0.798 0.212 0.114 1024 chr4 188520330 188530427 + 0 NA intron (NR_110436, intron 2 of 2) HAL1-3A_ME|LINE|L1 68417 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LOC100506272 - uncharacterized LOC100506272 ncRNA 0.087 0.157 0.043 0.170 0.168 0.019 0.068 0.043 0.404 0.088 0.098 0.043 0.100 0.474 0.047 0.245 0.048 0.030 0.041 0.408 0.219 0.127 0.129 4.127 1.989 0.023 0.227 0.113 0.353 0.023 0.033 0.078 0.046 0.029 0.161 0.309 0.022 0.083 1.452 1.691 942 chr3 52078662 52092187 + 0 NA intron (NM_001947, intron 2 of 2) MIR|SINE|MIR 5037 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 1.336 2.785 0.055 1.866 3.475 2.432 6.925 2.950 4.191 1.581 0.751 1.424 1.203 1.672 1.132 2.348 0.696 1.541 0.702 0.219 1.419 1.738 1.299 1.367 5.895 7.911 3.353 1.481 3.780 0.986 3.531 0.706 0.598 2.824 1.806 0.959 0.329 4.233 1.838 1.699 1.515 1.223 809 chr2 201932280 201938205 + 0 NA intron (NM_001321626, intron 1 of 12) AluSp|SINE|Alu 1109 NM_001321625 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 2.820 1.885 0.511 0.894 2.448 7.321 2.196 1.045 3.121 3.138 2.380 1.285 1.132 1.315 2.391 2.142 0.646 1.493 0.855 1.053 1.575 1.633 0.678 1.865 2.312 1.661 0.957 1.149 1.228 1.058 1.591 1.068 1.010 1.661 2.847 0.473 0.862 1.316 1.377 1.827 1.225 0.920 28 chr1 33218528 33236036 + 0 NA intron (NM_020888, intron 1 of 6) MIRc|SINE|MIR -3953 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 5.674 1.543 3.344 1.370 3.337 3.034 2.369 1.390 8.965 4.869 3.454 2.232 0.128 2.121 4.283 2.851 2.915 1.356 0.102 0.055 1.730 1.595 0.337 0.204 2.389 0.522 0.324 1.955 0.273 2.055 0.517 1.268 2.367 3.333 0.824 1.725 2.931 0.641 1.808 1.077 0.099 0.067 263 chr11 104836266 104841403 + 0 NA intron (NM_001225, intron 1 of 8) intron (NM_001225, intron 1 of 8) 491 NM_001225 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 1.629 2.503 4.782 0.814 2.506 0.332 3.166 2.095 2.406 1.772 2.466 1.129 1.014 5.866 5.208 2.447 3.539 2.980 0.139 3.865 3.426 0.847 2.822 6.617 3.812 1.717 2.048 4.688 0.430 1.663 2.539 3.701 1.067 0.395 2.714 2.122 0.150 2.533 1.510 0.168 0.090 271 chr11 128075229 128084585 + 0 NA Intergenic Intergenic 312298 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 2.667 3.295 2.743 2.051 4.119 8.606 4.160 5.454 1.202 1.419 0.934 3.749 2.411 6.566 2.305 2.844 3.792 2.215 0.085 0.029 2.955 2.333 0.583 0.142 17.543 6.659 2.667 4.083 7.575 0.418 1.833 0.322 1.731 1.339 11.043 0.631 2.639 1.257 2.868 3.781 1.582 0.969 719 chr19 41100196 41122771 + 0 NA exon (NM_003573, exon 6 of 34) exon (NM_003573, exon 6 of 34) 4206 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 1.067 3.444 0.324 1.232 2.566 1.289 1.067 0.546 nan 2.106 1.085 0.946 0.800 1.021 0.792 1.166 0.423 2.076 0.992 0.449 1.334 1.198 1.805 1.081 2.332 0.459 0.332 0.429 0.980 3.419 4.834 1.146 0.823 3.971 0.529 0.909 0.726 3.733 0.349 1.023 0.296 0.140 249 chr11 72481714 72506235 + 0 NA promoter-TSS (NR_039841) promoter-TSS (NR_039841) -601 NR_039841 100616410 NR_039841 ENSG00000265064 MIR4692 - microRNA 4692 ncRNA 0.417 0.683 0.609 0.207 0.654 0.311 0.176 0.344 nan 2.311 1.610 0.554 0.207 0.253 2.381 1.215 0.129 0.403 2.890 0.141 0.425 0.316 0.357 0.283 0.947 0.377 0.232 0.468 0.554 1.106 0.784 0.734 4.942 1.197 0.665 1.174 4.122 1.346 0.372 0.425 0.192 0.113 62 chr1 109808751 109827198 + 0 NA 3' UTR (NM_001408, exon 34 of 34) 3' UTR (NM_001408, exon 34 of 34) 7816 NM_001032291 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 2.101 0.657 0.625 0.534 1.067 1.833 2.528 1.068 4.944 2.159 2.020 1.847 0.690 0.758 3.413 1.245 0.830 0.761 0.549 0.285 1.282 1.061 0.887 1.263 2.823 0.785 0.443 1.497 1.087 2.006 0.846 0.976 4.601 1.666 1.305 0.660 1.820 2.709 1.059 1.642 0.643 0.353 989 chr4 1238822 1244983 + 0 NA intron (NM_001012614, intron 1 of 9) CpG 1006 NM_001328 1487 Hs.208597 NM_001328 ENSG00000159692 CTBP1 BARS C-terminal binding protein 1 protein-coding 5.614 5.549 3.641 1.447 8.458 2.302 6.672 1.921 7.519 5.433 5.383 2.404 1.913 2.256 4.315 2.680 1.939 1.572 2.714 2.184 2.197 3.540 3.885 3.383 6.382 4.695 2.340 2.489 5.239 3.885 7.972 3.355 2.514 9.763 4.054 1.850 2.819 6.227 2.039 2.481 2.056 1.130 66 chr1 150476395 150492677 + 0 NA intron (NM_004425, intron 7 of 9) intron (NM_004425, intron 7 of 9) -3697 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA 0.474 0.645 0.080 0.466 0.690 0.487 0.435 0.400 15.723 5.973 0.761 0.414 0.624 0.468 0.303 0.814 0.117 0.850 0.525 0.400 0.854 0.448 0.455 0.772 0.588 0.592 0.365 0.104 0.411 0.870 0.981 7.203 1.441 0.584 0.527 0.434 0.415 1.332 0.765 0.186 0.538 0.335 395 chr14 23442904 23453214 + 0 NA 3' UTR (NM_001289097, exon 2 of 2) 3' UTR (NM_001289097, exon 2 of 2) -1627 NM_198086 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 4.687 6.284 2.200 1.359 4.567 9.990 7.069 4.941 16.381 12.381 7.378 5.391 2.668 4.694 2.312 5.846 1.104 4.541 0.275 1.384 5.183 6.745 2.109 3.535 9.530 6.259 2.692 5.702 5.435 5.564 3.659 1.941 3.232 4.234 8.030 2.846 0.729 6.578 6.275 6.506 5.053 3.006 609 chr17 41605229 41637788 + 0 NA intron (NM_001322219, intron 23 of 23) intron (NM_001322219, intron 23 of 23) 1797 NM_001986 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 0.523 0.776 0.051 0.221 0.556 0.215 0.532 0.569 nan 1.601 1.008 0.337 0.306 0.185 1.094 0.583 0.088 1.341 0.476 0.442 0.681 0.484 0.430 4.021 1.265 0.427 0.230 0.286 0.819 3.118 0.430 0.351 0.873 0.875 0.327 0.549 0.413 1.505 0.269 0.261 0.467 0.240 1138 chr6 42279661 42291838 + 0 NA intron (NM_033502, intron 3 of 17) AluSx1|SINE|Alu -100116 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 1.177 0.824 0.010 0.775 1.843 1.367 0.605 2.131 0.793 0.341 0.260 1.055 0.845 0.528 1.255 5.084 0.392 1.945 0.050 0.057 2.637 2.121 0.411 0.186 0.922 2.252 1.115 1.122 4.981 0.976 1.673 1.497 1.308 2.298 5.176 0.579 0.688 0.124 2.434 1.601 2.223 1.931 111 chr1 157961746 157998579 + 0 NA intron (NM_001286349, intron 1 of 12) (CA)n|Simple_repeat|Simple_repeat 17099 NM_018240 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 0.653 3.410 0.091 1.076 1.981 3.745 1.615 1.412 0.220 0.206 0.401 0.533 3.998 1.879 0.503 3.042 0.931 3.064 0.097 0.034 3.832 3.427 1.831 2.196 7.555 3.134 1.317 0.825 3.665 1.086 1.816 0.471 0.866 1.383 2.516 1.091 0.210 4.141 3.792 2.194 2.079 2.057 1068 chr5 131778369 131787719 + 0 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 36579 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 0.313 0.565 7.201 0.299 0.345 0.094 0.088 0.214 0.430 0.124 0.811 0.379 0.038 0.582 1.012 0.782 2.487 0.410 0.085 0.029 0.332 0.107 0.078 0.087 0.934 0.091 0.108 0.140 0.214 0.205 0.288 0.404 2.977 0.298 0.118 0.835 1.927 0.159 0.364 0.101 0.049 0.033 801 chr2 169890537 169905727 + 0 NA Intergenic L1MB5|LINE|L1 -10299 NM_003742 8647 Hs.658439 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 0.414 0.100 0.008 0.647 0.632 0.062 0.683 0.300 1.833 0.518 0.660 0.372 0.111 2.487 0.958 0.532 0.188 0.232 0.045 0.009 0.351 0.080 0.005 0.088 0.115 0.036 0.052 0.344 0.105 0.204 0.028 0.140 0.969 0.136 0.178 0.532 0.219 0.050 0.290 0.399 0.011 0.003 444 chr15 37193895 37206795 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -21611 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 0.285 0.127 0.019 0.020 0.163 0.042 0.079 0.008 0.601 0.130 0.137 0.045 0.035 0.026 0.261 0.083 0.170 0.128 0.040 0.397 0.049 0.011 0.029 0.137 0.029 0.019 0.006 0.012 0.070 0.278 0.165 2.178 0.077 0.034 0.029 0.047 0.077 0.058 0.119 0.041 0.009 0.004 1260 chr8 86088091 86091861 + 0 NA promoter-TSS (NR_134311) promoter-TSS (NR_134311) 357 NM_001951 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 2.552 2.888 1.722 1.104 3.784 4.168 3.068 1.062 2.569 2.941 2.240 1.654 1.347 1.731 3.418 3.239 0.636 2.167 1.780 4.825 1.820 2.187 3.601 2.995 4.715 5.446 2.240 0.822 1.984 4.990 11.874 2.372 1.818 6.024 4.789 1.420 2.145 2.438 1.838 0.962 1.497 0.890 453 chr15 67126185 67136183 + 0 NA Intergenic Intergenic 117669 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.977 1.431 3.929 0.511 0.879 0.668 1.161 1.247 1.878 0.729 1.077 0.504 0.382 0.683 1.357 2.964 1.605 0.918 0.065 0.083 1.268 1.051 1.736 2.740 0.887 0.718 0.392 0.480 1.778 2.064 1.516 1.609 2.360 2.603 0.796 1.026 3.040 0.741 0.617 0.267 0.507 0.508 1172 chr7 1593857 1600553 + 0 NA Intergenic AluSx1|SINE|Alu -1139 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 5.004 1.839 0.075 1.375 2.516 1.357 3.523 1.356 13.427 6.099 8.388 1.792 1.120 1.670 3.871 1.719 3.575 3.146 1.931 0.208 2.012 2.326 0.495 2.319 3.558 0.577 0.398 2.378 0.403 5.775 0.998 2.017 2.539 6.561 1.832 3.297 6.075 3.446 1.732 0.832 0.533 0.168 537 chr16 86596394 86625373 + 0 NA Intergenic Intergenic -1232 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 0.903 0.158 0.006 0.013 0.075 4.656 0.131 0.095 0.177 0.114 0.085 0.045 0.393 1.082 0.160 2.016 0.059 5.741 0.083 0.010 1.404 0.834 0.025 0.784 0.398 0.967 0.413 0.205 0.668 0.690 0.276 1.812 0.473 0.112 6.568 0.380 0.258 0.247 0.354 0.576 1.163 1.048 486 chr16 3069155 3075236 + 0 NA TTS (NM_001002017) TTS (NM_001002017) -1825 NM_001347704 79228 Hs.412304 NM_024339 ENSG00000131652 THOC6 WDR58|fSAP35 THO complex 6 protein-coding 13.458 11.793 3.038 2.632 6.920 9.521 11.069 2.258 10.752 11.533 6.367 5.278 4.541 3.930 6.628 7.528 4.074 4.865 0.776 2.483 6.535 11.985 6.055 5.711 14.239 9.976 2.991 8.128 12.904 7.212 6.183 5.759 3.919 9.262 6.185 2.591 4.289 9.925 9.469 7.803 9.635 7.626 37 chr1 45195016 45206618 + 0 NA Intergenic Intergenic -4673 NM_001297655 11004 Hs.720061 NM_006845 ENSG00000142945 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 2.224 3.559 1.852 0.981 2.309 2.035 2.636 0.889 4.546 1.676 1.251 1.277 0.673 1.362 3.760 2.261 0.967 2.359 0.646 0.957 1.274 1.231 1.439 2.019 5.873 1.607 0.775 2.224 3.194 1.705 3.202 1.603 1.904 2.873 2.925 0.604 4.695 2.414 1.463 1.167 1.424 1.066 1058 chr5 68738363 68751553 + 0 NA Intergenic AluSx|SINE|Alu 34019 NM_001038603 153562 Hs.657687 NM_144724 ENSG00000152939 MARVELD2 DFNB49|MARVD2|MRVLDC2|Tric MARVEL domain containing 2 protein-coding 0.394 0.160 0.047 0.187 0.200 0.048 0.492 1.972 0.964 0.176 1.179 0.111 0.098 1.102 0.255 0.464 0.036 0.303 0.652 0.016 1.253 0.618 0.061 0.237 0.161 0.151 0.100 1.061 0.150 0.598 0.234 0.095 0.565 0.275 0.217 0.241 0.215 0.101 0.449 0.081 1.049 0.563 626 chr17 48607372 48626245 + 0 NA promoter-TSS (NR_135675) promoter-TSS (NR_135675) -693 NR_135675 105371824 Hs.683630 NR_135675 ENSG00000250286 LOC105371824 - uncharacterized LOC105371824 ncRNA 1.880 1.601 0.779 1.041 2.224 0.660 0.852 0.916 nan 2.488 2.193 0.759 0.612 1.080 1.453 2.147 0.718 0.993 0.492 0.132 1.618 1.411 0.573 1.728 0.996 0.738 0.421 0.801 0.797 2.958 1.395 2.195 2.366 1.653 0.635 1.786 2.190 1.758 0.665 0.227 0.247 0.164 1231 chr8 29195975 29212731 + 0 NA intron (NM_057158, intron 1 of 4) intron (NM_057158, intron 1 of 4) 1969 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 4.392 5.235 0.044 0.668 1.661 4.227 2.211 1.994 5.022 3.393 1.685 2.513 1.021 0.532 6.057 2.728 0.291 4.079 2.969 0.083 5.075 6.257 0.053 6.010 4.763 2.780 1.422 0.502 0.733 6.165 0.178 5.395 5.484 1.990 0.061 6.171 3.809 3.772 1.656 5.018 0.058 0.027 940 chr3 47843011 47845896 + 0 NA promoter-TSS (NR_075079) promoter-TSS (NR_075079) 54 NM_138615 22907 Hs.517948 NM_014966 ENSG00000132153 DHX30 DDX30|RETCOR DExH-box helicase 30 protein-coding 4.342 7.885 3.864 1.351 5.373 5.903 8.623 3.102 4.538 4.257 2.958 2.403 1.382 2.060 5.196 4.668 1.790 3.689 1.762 2.887 2.487 4.091 2.853 5.098 9.903 12.349 4.567 2.610 5.632 4.726 5.312 2.354 2.540 6.880 4.780 1.326 1.576 7.985 6.465 3.123 5.609 4.362 900 chr21 45004876 45024176 + 0 NA intron (NM_007031, intron 7 of 8) L1MEe|LINE|L1 15344 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 2.640 1.503 1.282 0.816 1.902 2.714 0.821 1.718 1.579 0.923 2.214 1.949 0.735 1.052 1.257 4.071 1.022 1.515 0.057 0.043 0.849 0.633 1.714 2.289 5.441 0.556 0.419 0.501 5.350 0.745 0.004 0.642 1.746 2.409 1.578 1.215 0.489 1.353 1.399 2.629 0.987 0.573 533 chr16 73066036 73106533 + 0 NA intron (NM_001164766, intron 1 of 8) intron (NM_001164766, intron 1 of 8) -4010 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 1.249 3.333 0.643 0.745 2.136 5.501 2.299 0.542 5.826 3.240 2.487 1.021 0.846 0.916 2.016 2.463 0.714 1.561 3.493 1.321 2.708 2.544 1.111 2.396 4.389 4.105 1.781 0.824 2.137 3.253 1.392 1.612 2.847 3.464 4.453 0.817 1.615 1.087 0.993 0.853 1.280 1.185 1096 chr6 1603783 1616025 + 0 NA promoter-TSS (NM_001453) promoter-TSS (NM_001453) -777 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 2.585 0.355 0.360 0.248 1.367 0.077 0.861 0.276 5.796 4.406 6.192 0.965 0.222 0.348 2.424 1.102 0.616 0.978 0.288 0.363 1.038 1.008 1.474 2.819 1.630 1.697 0.948 0.213 0.974 2.095 3.093 1.998 1.005 2.816 0.770 0.670 1.534 7.769 1.590 0.386 0.216 0.126 859 chr20 45336518 45344221 + 0 NA intron (NM_030777, intron 1 of 4) intron (NM_030777, intron 1 of 4) 2090 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATS|GLUT10 solute carrier family 2 member 10 protein-coding 1.439 0.427 0.347 0.049 0.123 0.068 0.506 0.041 2.952 0.789 1.120 0.188 0.612 0.352 0.739 0.459 0.669 0.096 0.066 0.254 0.847 0.690 0.559 0.112 0.114 0.751 0.403 0.199 0.260 0.646 0.071 0.308 2.266 0.102 0.097 0.175 5.564 1.711 0.041 0.363 0.232 0.158 1105 chr6 14762667 14779357 + 0 NA Intergenic Intergenic -475194 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 0.099 0.224 0.023 0.103 0.201 5.537 0.123 0.164 0.412 0.072 0.133 0.240 0.127 0.111 0.162 0.523 0.035 2.769 0.066 0.017 2.082 1.886 0.031 2.942 0.154 0.145 0.084 0.074 1.419 1.129 0.094 0.038 0.802 0.161 0.174 0.655 0.108 0.084 0.108 0.110 0.021 0.018 1129 chr6 35325940 35371283 + 0 NA intron (NM_001171819, intron 2 of 6) MIRb|SINE|MIR 38276 NM_001171820 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 0.899 0.448 0.152 0.850 1.229 0.145 1.203 1.705 2.930 0.777 1.638 0.751 0.201 1.383 0.676 2.689 0.088 0.555 0.053 0.064 0.799 0.349 0.057 0.095 0.298 0.308 0.213 0.796 1.160 0.176 0.337 0.147 0.712 2.320 0.347 0.400 0.305 0.264 0.570 0.594 3.304 3.811 125 chr1 180119276 180128537 + 0 NA promoter-TSS (NM_002826) promoter-TSS (NM_002826) -62 NM_001004128 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 5.840 2.139 0.023 1.798 3.828 0.305 2.970 3.112 5.987 2.393 2.294 1.863 1.301 6.321 1.342 3.281 0.547 1.447 0.356 0.390 2.004 1.518 0.721 0.916 2.277 5.526 2.174 1.357 1.277 1.423 1.165 1.410 1.165 2.326 2.322 0.965 0.607 1.244 0.982 2.387 0.833 0.379 720 chr19 41722111 41740508 + 0 NA intron (NM_021913, intron 4 of 19) intron (NM_021913, intron 4 of 19) -1351 NM_001278599 558 Hs.590970 NM_001699 ENSG00000167601 AXL ARK|JTK11|Tyro7|UFO AXL receptor tyrosine kinase protein-coding 5.558 4.735 0.077 1.333 3.299 4.480 3.468 1.883 nan 0.548 0.686 1.209 2.849 1.750 1.283 4.255 0.784 3.856 0.065 0.128 3.379 4.057 3.041 0.927 9.304 6.427 2.164 1.345 6.269 4.541 11.853 0.317 0.458 4.769 1.781 0.606 0.239 3.348 1.290 3.062 5.698 4.004 297 chr12 14985932 15001015 + 0 NA exon (NM_021071, exon 2 of 3) exon (NM_021071, exon 2 of 3) 2940 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 0.276 0.434 0.008 0.673 0.813 0.479 1.222 0.998 1.404 0.605 0.448 0.601 0.555 0.514 0.910 0.730 0.360 4.170 0.485 0.055 1.089 0.407 0.142 0.168 2.203 0.828 0.518 0.305 1.608 0.367 0.375 0.225 0.273 0.213 0.240 0.081 0.427 0.854 0.577 0.157 0.651 0.538 1078 chr5 137798903 137802414 + 0 NA promoter-TSS (NM_001964) promoter-TSS (NM_001964) -523 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 3.739 3.536 3.053 0.973 3.320 4.602 2.670 0.932 13.482 9.547 6.992 1.412 1.420 3.337 3.568 2.591 2.017 2.246 2.041 3.109 2.805 2.445 3.980 3.982 2.938 4.001 1.891 1.225 1.921 5.661 6.365 2.378 4.498 10.120 3.723 2.573 2.743 7.748 2.281 3.197 2.788 1.604 814 chr2 208391340 208399107 + 0 NA intron (NM_004379, intron 1 of 7) GC_rich|Low_complexity|Low_complexity 607 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 3.410 4.200 1.752 1.806 5.251 3.816 4.302 1.610 6.447 3.658 3.346 1.928 2.077 3.287 2.323 4.307 1.320 1.488 0.877 1.000 3.590 3.852 1.824 7.685 6.491 5.593 2.288 2.554 3.656 3.201 4.150 1.231 1.623 4.956 5.346 1.069 1.684 5.563 2.523 3.318 1.779 1.026 389 chr13 107509587 107514920 + 0 NA Intergenic Intergenic 206025 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 0.070 8.849 0.150 0.430 0.051 3.481 1.067 0.905 0.109 4.206 0.105 0.018 0.035 0.182 0.027 0.040 0.115 0.024 0.043 0.021 0.207 0.015 0.079 0.036 0.605 0.035 0.046 0.341 0.044 0.060 0.014 0.014 0.010 848 chr20 32306539 32323703 + 0 NA Intergenic Intergenic -4445 NM_001282933 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 - zinc finger protein 341 protein-coding 2.368 1.458 1.451 0.528 1.625 1.772 1.764 0.815 nan 1.062 1.990 0.349 0.385 0.826 3.385 0.671 3.565 0.771 0.371 0.711 1.181 1.567 1.006 2.521 1.260 0.864 0.459 1.394 0.980 3.339 1.780 1.150 2.567 1.793 0.942 0.948 5.024 1.539 0.733 0.532 0.265 0.142 835 chr20 326663 366315 + 0 NA Intergenic AluSq2|SINE|Alu -14784 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 0.667 2.178 0.338 0.449 1.323 0.787 0.369 1.037 10.595 6.014 2.330 0.964 0.400 0.911 2.133 1.030 1.272 1.427 0.607 3.728 1.323 1.277 0.637 5.001 1.084 0.730 0.396 0.795 0.726 3.807 1.417 2.606 3.971 1.555 0.852 1.773 3.519 1.080 1.773 0.479 0.653 0.280 407 chr14 37331702 37353033 + 0 NA intron (NM_030631, intron 2 of 9) intron (NM_030631, intron 2 of 9) 79229 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 0.155 0.054 0.079 0.044 0.185 0.027 0.118 0.075 12.195 1.597 0.167 0.746 0.016 0.075 0.077 0.150 0.036 0.082 0.105 0.013 0.078 0.027 0.024 0.064 0.073 0.028 0.029 0.119 0.112 0.111 0.030 0.048 0.165 0.100 0.044 0.276 0.085 0.049 0.056 0.018 0.016 0.009 408 chr14 37889763 37907433 + 0 NA intron (NM_138731, intron 12 of 13) AT_rich|Low_complexity|Low_complexity 165727 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 1.225 0.072 0.926 0.021 0.145 0.032 0.116 0.077 2.631 0.926 4.621 0.091 0.056 0.074 0.612 0.092 0.102 0.104 0.050 0.016 0.114 0.025 0.012 0.110 0.052 0.027 0.013 0.091 0.085 0.165 0.014 0.196 1.001 0.210 0.125 0.312 1.194 0.026 0.035 0.021 0.010 0.006 1289 chr8 145638477 145656736 + 0 NA Intergenic AluSp|SINE|Alu -5327 NM_130849 55630 Hs.521934 NM_017767 ENSG00000147804 SLC39A4 AEZ|AWMS2|ZIP4 solute carrier family 39 member 4 protein-coding 5.265 2.654 3.154 1.883 4.571 2.845 1.835 1.967 6.030 3.222 1.199 4.052 0.894 1.374 5.728 4.492 2.132 0.878 2.034 0.798 1.167 1.409 1.199 0.878 7.279 2.108 1.037 1.449 1.541 2.293 3.439 1.109 1.121 7.172 1.156 0.490 1.700 4.233 1.756 1.031 1.274 0.782 163 chr10 34972275 35030799 + 0 NA intron (NM_001184785, intron 1 of 24) intron (NM_001184785, intron 1 of 24) 102716 NM_001184787 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.399 0.866 0.220 0.379 0.672 2.055 0.315 0.485 0.839 0.212 0.437 0.225 0.787 0.546 0.324 1.547 0.181 2.456 0.026 0.033 1.396 0.880 0.099 0.459 0.156 0.166 0.139 0.697 0.247 0.796 0.145 0.513 0.692 0.743 9.395 0.634 0.449 0.155 0.585 0.584 0.191 0.122 217 chr11 62304627 62330232 + 0 NA Intergenic AluSx|SINE|Alu -3097 NM_001620 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 3.625 4.002 1.829 1.384 2.453 3.313 2.611 1.916 3.312 1.949 1.913 3.558 1.685 2.127 3.371 5.201 1.790 3.323 0.413 0.346 2.412 2.583 2.022 2.756 6.502 7.182 2.750 1.619 10.132 4.210 4.278 0.951 1.768 3.814 5.329 1.218 1.269 3.704 3.327 4.946 4.296 3.010 871 chr20 52256437 52309799 + 0 NA Intergenic AluJb|SINE|Alu 58225 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 0.822 0.706 0.960 0.597 0.897 0.267 1.050 0.726 2.467 0.816 3.290 0.356 0.669 1.282 1.984 0.931 1.503 0.687 0.077 1.610 1.385 1.030 0.470 0.927 0.876 0.165 0.153 0.858 2.325 1.751 1.410 0.568 1.052 0.607 0.596 0.489 1.436 3.977 0.486 0.557 0.217 0.154 58 chr1 94690365 94738166 + 0 NA promoter-TSS (NM_001328665) promoter-TSS (NM_001328665) -949 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 2.608 0.380 0.056 1.138 2.265 0.412 1.877 1.475 0.847 0.319 0.539 1.377 0.423 1.214 5.399 2.071 0.690 0.695 1.831 0.023 1.196 0.878 0.029 0.208 0.956 0.194 0.100 0.459 0.276 0.231 0.331 0.188 0.642 1.744 3.674 0.090 0.213 0.360 1.244 0.632 0.994 0.990 855 chr20 43342254 43377341 + 0 NA intron (NR_132377, intron 3 of 4) MIR|SINE|MIR -14691 NM_022358 60598 Hs.528664 NM_022358 ENSG00000124249 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium two pore domain channel subfamily K member 15 protein-coding 1.724 0.929 0.074 0.273 0.648 3.736 1.250 0.613 1.242 0.393 0.392 0.267 0.491 0.545 0.532 0.489 2.550 0.905 0.054 0.110 1.112 0.700 3.001 2.768 6.069 0.530 0.261 0.493 0.208 2.083 0.453 0.874 1.527 0.418 2.509 0.346 3.147 9.747 1.576 0.434 0.197 0.095 461 chr15 74809567 74836402 + 0 NA Intergenic Intergenic -10534 NM_001307939 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 1.467 0.357 2.283 0.866 1.630 1.847 0.902 1.693 1.027 0.488 0.454 2.142 0.544 1.464 0.683 3.587 0.203 0.980 0.164 0.545 1.237 0.893 0.346 0.398 1.093 0.379 0.270 1.573 0.489 0.325 0.759 0.196 0.743 2.211 1.736 0.259 1.519 0.611 1.178 0.896 0.350 0.147 490 chr16 8956914 8981196 + 0 NA Intergenic AluJb|SINE|Alu -6186 NM_014316 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 1.366 1.642 0.097 0.945 1.861 0.864 1.001 0.412 2.350 0.724 0.503 0.252 0.336 2.285 0.869 1.464 1.118 0.633 0.403 0.192 0.906 0.550 0.655 0.934 1.503 0.970 0.540 0.675 0.345 1.590 0.906 0.500 1.419 0.924 1.154 0.237 0.517 1.461 1.040 0.241 0.261 0.124 776 chr2 60775856 60783391 + 0 NA intron (NM_138559, intron 1 of 4) CpG 1010 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 1.004 0.124 1.116 0.828 2.992 0.175 0.145 0.450 4.319 3.280 2.616 0.193 1.855 1.329 0.077 0.957 0.013 6.069 2.251 0.093 1.359 0.732 0.049 0.544 0.745 4.556 2.075 0.732 1.085 0.551 2.737 1.142 3.144 1.556 0.036 2.768 0.746 9.410 0.251 0.657 0.099 0.039 762 chr2 19806063 19813994 + 0 NA Intergenic Intergenic -251656 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transciption factor 1 protein-coding 0.287 1.351 0.032 0.951 0.711 0.141 0.161 0.039 0.271 0.040 0.100 0.110 0.803 0.344 2.323 1.541 0.024 4.339 0.583 1.493 0.939 0.010 0.367 0.568 0.175 0.128 0.212 11.868 0.616 0.045 0.336 0.208 0.402 0.109 0.571 0.116 0.103 0.919 0.212 11.152 13.283 638 chr17 69182587 69189819 + 0 NA intron (NR_104152, intron 1 of 3) intron (NR_104152, intron 1 of 3) 12117 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 0.801 2.604 0.068 2.327 2.956 0.113 3.335 3.221 0.601 0.380 0.933 4.770 1.974 3.917 0.839 4.498 0.278 2.738 0.027 0.690 0.542 0.050 0.038 0.294 0.100 0.021 1.174 3.127 0.056 0.040 0.054 0.037 2.059 0.097 0.185 0.081 0.072 3.612 4.675 1.250 0.987 1249 chr8 68371902 68376240 + 0 NA intron (NR_136224, intron 2 of 4) intron (NR_136224, intron 2 of 4) 118002 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 3.382 0.150 1.882 0.174 1.341 0.103 0.313 0.218 4.617 4.952 2.483 2.360 0.327 0.318 1.005 0.951 0.064 0.045 0.095 0.064 0.108 0.152 0.150 0.148 0.028 6.414 0.229 0.094 0.131 0.145 0.812 3.402 1.613 0.142 0.970 0.174 1.088 0.036 0.027 5 chr1 6257129 6267911 + 0 NA Intergenic AluJo|SINE|Alu -2841 NM_000983 6146 Hs.515329 NM_000983 ENSG00000116251 RPL22 EAP|HBP15|HBP15/L22|L22 ribosomal protein L22 protein-coding 2.995 2.021 1.441 1.038 2.880 4.188 2.463 0.804 nan 2.809 1.816 1.885 1.014 2.023 2.441 2.382 1.984 2.473 2.092 1.224 1.492 1.810 2.385 3.395 3.269 3.011 1.514 0.835 1.988 3.072 2.693 1.972 1.765 2.238 4.752 1.601 3.038 5.661 2.056 1.230 1.190 1.125 1268 chr8 103763739 103772327 + 0 NA Intergenic MIRb|SINE|MIR -99903 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 0.427 2.483 0.007 2.231 3.434 0.091 1.130 2.815 1.914 0.414 0.395 3.416 0.918 1.826 1.213 5.461 1.102 1.627 0.095 2.169 1.495 0.128 0.350 0.139 0.308 0.219 2.400 2.979 0.753 1.032 0.091 2.417 2.078 0.194 0.544 0.686 0.379 1.278 1.062 0.020 1307 chr9 109621440 109628564 + 0 NA promoter-TSS (NM_001347997) promoter-TSS (NM_001347997) -376 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 2.320 4.478 0.672 1.349 2.450 1.639 6.641 1.859 4.089 2.566 1.848 2.054 2.017 2.568 0.324 5.945 2.028 2.422 1.220 3.056 3.248 1.473 2.949 3.480 7.820 3.092 2.572 4.554 1.851 4.583 0.408 0.243 2.037 0.117 0.513 0.313 4.096 2.141 4.047 2.466 1.379 907 chr22 20848512 20852500 + 0 NA promoter-TSS (NR_033825) promoter-TSS (NR_033825) -336 NR_033825 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 5.310 9.358 10.300 0.954 5.150 4.202 6.105 1.796 7.836 4.663 5.174 1.028 0.744 1.450 1.995 0.821 1.702 1.501 1.071 1.987 1.538 1.902 5.199 3.010 5.402 4.064 2.014 1.252 2.919 3.143 5.042 3.660 2.083 6.584 2.765 1.287 2.738 5.164 1.974 1.219 1.473 0.853 231 chr11 65231607 65280176 + 0 NA Intergenic Intergenic -9318 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 1.911 4.968 1.627 1.475 3.142 3.933 3.513 2.251 11.819 6.873 3.941 2.318 2.813 4.246 3.490 4.091 2.144 3.673 2.665 2.925 5.773 6.519 5.417 6.708 12.010 3.611 1.678 3.906 6.991 5.854 6.295 3.603 7.035 3.568 7.817 2.386 9.017 4.734 6.758 3.040 6.432 5.166 381 chr13 74017767 74049950 + 0 NA Intergenic Intergenic -104523 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.163 0.119 0.019 0.041 0.072 0.036 0.080 0.145 4.708 1.342 0.502 0.252 0.037 0.224 0.266 0.276 0.030 0.189 0.050 0.026 0.137 0.038 0.020 0.087 0.175 0.045 0.043 0.153 0.096 0.369 0.025 0.264 0.403 0.044 0.031 0.293 0.472 0.030 0.052 0.090 0.016 0.010 1334 chrX 12988614 13028491 + 0 NA Intergenic AluJr|SINE|Alu 15326 NM_021109 7114 Hs.437277 NM_021109 ENSG00000205542 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 1.677 1.043 0.311 0.800 1.360 0.515 1.159 0.822 1.166 0.571 2.095 1.643 0.395 0.748 1.362 1.211 0.411 2.619 0.240 0.014 1.925 1.626 0.178 1.361 0.598 0.475 0.247 1.090 1.060 1.283 0.444 0.614 1.631 1.848 0.638 0.300 0.535 0.806 1.170 0.862 0.209 0.172